locus-tag	class	description
DJ40_10	COG0346	lactoylglutathione lyase activity
DJ40_100	COG1129	ABC transporter
DJ40_1000	COG1125	glycine betaine transport
DJ40_1001	COG1174	glycine betaine transport
DJ40_1002	COG1732	Glycine betaine
DJ40_1003	COG2897	thiosulfate sulfurtransferase activity
DJ40_1006	COG0410	ABC transporter
DJ40_1007	COG1122	ATPase activity
DJ40_101	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_1011	COG4807	Protein conserved in bacteria
DJ40_1014	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
DJ40_1016	COG2261	transglycosylase associated protein
DJ40_1018	COG1403	HNH endonuclease
DJ40_102	COG1879	ABC-type sugar transport system periplasmic component
DJ40_1020	COG0277	FAD linked oxidase domain protein
DJ40_1021	COG1686	Belongs to the peptidase S11 family
DJ40_1023	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJ40_1027	COG0513	Belongs to the DEAD box helicase family
DJ40_1028	COG1309	transcriptional regulator
DJ40_1030	COG1131	(ABC) transporter
DJ40_1031	COG0842	Transport permease protein
DJ40_1032	COG0842	Transport permease protein
DJ40_1034	COG1902	pentaerythritol trinitrate reductase activity
DJ40_1039	COG2211	Major facilitator Superfamily
DJ40_104	COG1609	Transcriptional regulator
DJ40_1040	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
DJ40_1042	COG0583	DNA-binding transcription factor activity
DJ40_1043	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DJ40_1047	COG0670	Belongs to the BI1 family
DJ40_1048	COG0314	molybdopterin synthase activity
DJ40_1049	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
DJ40_105	COG1757	Na H antiporter
DJ40_1051	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DJ40_1053	COG0391	Required for morphogenesis under gluconeogenic growth conditions
DJ40_1054	COG4628	conserved protein (DUF2132)
DJ40_1057	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DJ40_1058	COG2226	methyltransferase
DJ40_106	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DJ40_1063	COG0561	phosphatase activity
DJ40_1065	COG4149	molybdate abc transporter
DJ40_1066	COG0725	ABC transporter, periplasmic molybdate-binding protein
DJ40_1068	COG2005	Transcriptional regulator
DJ40_1068	COG3585	molybdate ion transport
DJ40_1069	COG1119	ATPase activity
DJ40_1072	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DJ40_1073	COG1085	galactose-1-phosphate uridylyltransferase
DJ40_1075	COG2017	converts alpha-aldose to the beta-anomer
DJ40_1078	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DJ40_1080	COG1230	cation diffusion facilitator family transporter
DJ40_1086	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
DJ40_1087	COG2885	chlorophyll binding
DJ40_1089	COG3064	Membrane
DJ40_1089	COG3064	Membrane
DJ40_1090	COG0848	biopolymer transport protein
DJ40_1091	COG0811	peptide transport
DJ40_1092	COG0824	Thioesterase
DJ40_1093	COG3790	cyd operon protein YbgE
DJ40_1094	COG4890	Cyd operon protein YbgT
DJ40_1095	COG1294	oxidase, subunit
DJ40_1096	COG1271	oxidase subunit
DJ40_1097	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DJ40_1099	COG0508	dehydrogenase complex catalyzes the overall conversion of
DJ40_110	COG1012	belongs to the aldehyde dehydrogenase family
DJ40_1100	COG0567	Dehydrogenase, E1 component
DJ40_1102	COG1053	succinate dehydrogenase
DJ40_1103	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DJ40_1104	COG2009	succinate dehydrogenase
DJ40_1107	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DJ40_1108	COG0497	DNA recombination
DJ40_1109	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJ40_111	COG3284	Transcriptional regulator
DJ40_1111	COG2867	negative regulation of translational initiation
DJ40_1113	COG0582	viral genome integration into host DNA
DJ40_112	COG4221	oxidoreductase activity
DJ40_1125	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJ40_1126	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DJ40_1135	COG0582	viral genome integration into host DNA
DJ40_1136	COG2963	transposase activity
DJ40_1138	COG0596	Alpha beta hydrolase
DJ40_1142	COG0735	belongs to the Fur family
DJ40_1146	COG1943	Transposase
DJ40_1147	COG2190	(PTS) system
DJ40_1147	COG1263	PTS System
DJ40_1147	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJ40_1149	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DJ40_1150	COG1846	Transcriptional regulator
DJ40_1150	COG1940	carbohydrate kinase activity
DJ40_1151	COG0647	UMP catabolic process
DJ40_1152	COG0367	asparagine synthase
DJ40_1159	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ40_116	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DJ40_1161	COG1702	phosphate starvation-inducible protein PhoH
DJ40_1163	COG4535	Mg2 and Co2 transporter CorC
DJ40_1164	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DJ40_1166	COG0765	amino acid transport
DJ40_1167	COG0765	amino acid transport
DJ40_1168	COG1126	abc transporter atp-binding protein
DJ40_1169	COG2888	peptidyl-tyrosine sulfation
DJ40_1172	COG1466	dna polymerase III delta subunit
DJ40_1174	COG0799	negative regulation of ribosome biogenesis
DJ40_1176	COG0768	penicillin binding
DJ40_1177	COG0772	Belongs to the SEDS family
DJ40_1178	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DJ40_1179	COG1686	Belongs to the peptidase S11 family
DJ40_118	COG1940	carbohydrate kinase activity
DJ40_1183	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DJ40_1184	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DJ40_1185	COG1278	Cold shock
DJ40_1186	COG1278	Cold shock
DJ40_1187	COG2197	response regulator
DJ40_119	COG2814	Major facilitator Superfamily
DJ40_1191	COG5265	(ABC) transporter
DJ40_1193	COG3718	enzyme involved in inositol metabolism
DJ40_1195	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ40_1196	COG0673	inositol 2-dehydrogenase activity
DJ40_1197	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_1198	COG1129	ABC transporter
DJ40_1199	COG1879	ABC-type sugar transport system periplasmic component
DJ40_12	COG1902	pentaerythritol trinitrate reductase activity
DJ40_1200	COG0673	inositol 2-dehydrogenase activity
DJ40_1201	COG3962	Belongs to the TPP enzyme family
DJ40_1205	COG2373	Large extracellular alpha-helical protein
DJ40_1206	COG4953	penicillin-binding protein 1C
DJ40_1207	COG3423	Transcriptional regulator
DJ40_121	COG0114	fumarate hydratase activity
DJ40_1216	COG2850	peptidyl-arginine hydroxylation
DJ40_1217	COG1187	pseudouridine synthase activity
DJ40_122	COG1482	cell wall glycoprotein biosynthetic process
DJ40_1222	COG0656	L-ascorbic acid biosynthetic process
DJ40_1223	COG0667	Aldo Keto reductase
DJ40_1227	COG2453	phosphatase
DJ40_1227	COG0671	phosphoesterase, PA-phosphatase related
DJ40_1228	COG2267	carboxylic ester hydrolase activity
DJ40_123	COG5339	Protein conserved in bacteria
DJ40_1230	COG4589	Belongs to the CDS family
DJ40_1231	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DJ40_1240	COG2003	Belongs to the UPF0758 family
DJ40_1247	COG3596	GTP binding
DJ40_125	COG0385	Bile acid
DJ40_1251	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DJ40_1256	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DJ40_1257	COG1061	Type III restriction enzyme res subunit
DJ40_1258	COG1002	Type II restriction enzyme, methylase subunits
DJ40_1259	COG0582	viral genome integration into host DNA
DJ40_126	COG0673	inositol 2-dehydrogenase activity
DJ40_1262	COG2501	S4 domain
DJ40_1264	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DJ40_1266	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DJ40_1267	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DJ40_1268	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
DJ40_1269	COG4181	ATPase activity
DJ40_1270	COG2755	lipolytic protein G-D-S-L family
DJ40_1271	COG0300	oxidoreductase activity
DJ40_1272	COG3118	belongs to the thioredoxin family
DJ40_1273	COG0330	HflC and HflK could
DJ40_1274	COG1585	Membrane protein implicated in regulation of membrane protease activity
DJ40_1275	COG0789	Transcriptional regulator
DJ40_1276	COG2217	Heavy metal translocating P-type atpase
DJ40_1277	COG3735	TraB family
DJ40_1278	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DJ40_128	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_1283	COG5301	cellulose 1,4-beta-cellobiosidase activity
DJ40_1294	COG4386	tail sheath protein
DJ40_13	COG1309	transcriptional regulator
DJ40_130	COG1879	ABC-type sugar transport system periplasmic component
DJ40_1322	COG0582	viral genome integration into host DNA
DJ40_133	COG2274	protein secretion by the type I secretion system
DJ40_1330	COG3179	chitinase
DJ40_1335	COG1403	HNH endonuclease
DJ40_1337	COG0582	viral genome integration into host DNA
DJ40_1338	COG0737	Belongs to the 5'-nucleotidase family
DJ40_1339	COG0737	Belongs to the 5'-nucleotidase family
DJ40_1340	COG2223	nitrite transmembrane transporter activity
DJ40_1341	COG4651	solute:proton antiporter activity
DJ40_1341	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DJ40_1342	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ40_1343	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
DJ40_1345	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
DJ40_1350	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ40_1350	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DJ40_1353	COG0438	transferase activity, transferring glycosyl groups
DJ40_1355	COG2244	polysaccharide biosynthetic process
DJ40_1356	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ40_1357	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ40_1361	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ40_1361	COG0543	2 iron, 2 sulfur cluster binding
DJ40_1367	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DJ40_1369	COG2832	Protein of unknown function (DUF454)
DJ40_1371	COG1196	nuclear chromosome segregation
DJ40_1371	COG3264	Mechanosensitive ion channel
DJ40_1372	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
DJ40_1373	COG1309	transcriptional regulator
DJ40_1374	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ40_1375	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ40_1377	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DJ40_1381	COG3695	enzyme binding
DJ40_1382	COG3126	Type III secretion system lipoprotein chaperone (YscW)
DJ40_1383	COG1946	Acyl-CoA thioesterase
DJ40_1384	COG0004	ammonium transporteR
DJ40_1385	COG0347	Belongs to the P(II) protein family
DJ40_1386	COG1132	(ABC) transporter
DJ40_1387	COG1132	(ABC) transporter
DJ40_1388	COG1522	sequence-specific DNA binding
DJ40_1391	COG4533	DNA binding
DJ40_1393	COG0824	Thioesterase
DJ40_1394	COG1555	photosystem II stabilization
DJ40_1395	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ40_1396	COG0776	regulation of translation
DJ40_1397	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DJ40_14	COG2194	sulfuric ester hydrolase activity
DJ40_140	COG2207	Transcriptional regulator
DJ40_140	COG3708	Transcriptional regulator
DJ40_1402	COG0271	Belongs to the BolA IbaG family
DJ40_1403	COG3056	Lipoprotein
DJ40_1404	COG2223	nitrite transmembrane transporter activity
DJ40_1406	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DJ40_1407	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DJ40_1408	COG1845	cytochrome c oxidase, subunit III
DJ40_1409	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DJ40_1411	COG2814	Major facilitator Superfamily
DJ40_1413	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DJ40_1414	COG0693	protein deglycase activity
DJ40_1417	COG0142	geranyltranstransferase activity
DJ40_1419	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DJ40_142	COG4659	FMN binding
DJ40_1420	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DJ40_1423	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJ40_1423	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJ40_1426	COG1943	Transposase
DJ40_1427	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DJ40_1428	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DJ40_1429	COG1862	Preprotein translocase
DJ40_1432	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
DJ40_1433	COG0450	alkyl hydroperoxide reductase
DJ40_1436	COG0366	Alpha amylase catalytic
DJ40_1438	COG1114	Component of the transport system for branched-chain amino acids
DJ40_144	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DJ40_1440	COG5002	protein histidine kinase activity
DJ40_1441	COG0745	RESPONSE REGULATOR receiver
DJ40_1442	COG0420	3'-5' exonuclease activity
DJ40_1443	COG0419	ATPase involved in DNA repair
DJ40_1444	COG1940	carbohydrate kinase activity
DJ40_1449	COG2226	methyltransferase
DJ40_145	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ40_1459	COG1943	Transposase
DJ40_146	COG2271	Major facilitator Superfamily
DJ40_1461	COG2195	Cleaves the N-terminal amino acid of tripeptides
DJ40_1465	COG1477	protein flavinylation
DJ40_1469	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJ40_1470	COG1805	sodium ion transport
DJ40_1471	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJ40_1472	COG0121	glutamine amidotransferase
DJ40_1473	COG3034	peptidoglycan biosynthetic process
DJ40_1475	COG1960	acyl-CoA dehydrogenase activity
DJ40_1477	COG3914	O-linked N-acetylglucosamine transferase SPINDLY family
DJ40_148	COG1966	Carbon starvation protein
DJ40_149	COG2879	small protein
DJ40_1491	COG0582	viral genome integration into host DNA
DJ40_1492	COG0436	Aminotransferase
DJ40_1495	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DJ40_15	COG3313	Fe-S protein
DJ40_150	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DJ40_1504	COG2814	Major facilitator Superfamily
DJ40_1505	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DJ40_1507	COG1846	Transcriptional regulator
DJ40_1508	COG1566	PFAM secretion protein HlyD family protein
DJ40_1509	COG2814	Major facilitator Superfamily
DJ40_1510	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJ40_1511	COG3118	belongs to the thioredoxin family
DJ40_1513	COG1042	CoA-binding domain protein
DJ40_1513	COG0045	succinate-CoA ligase (ADP-forming) activity
DJ40_1513	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJ40_1514	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ40_1515	COG5544	Lipoprotein
DJ40_1520	COG0542	response to heat
DJ40_1522	COG0564	pseudouridine synthase activity
DJ40_1523	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJ40_1524	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DJ40_1525	COG0077	Prephenate dehydratase
DJ40_1525	COG1605	Chorismate mutase
DJ40_1526	COG1605	Chorismate mutase
DJ40_1526	COG0287	Prephenate dehydrogenase
DJ40_1527	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DJ40_1528	COG3279	Response regulator of the LytR AlgR family
DJ40_1529	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
DJ40_1530	COG3137	Salt-induced outer membrane protein
DJ40_1535	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DJ40_1536	COG4137	Cytochrome C assembly protein
DJ40_1537	COG4536	flavin adenine dinucleotide binding
DJ40_154	COG0023	Translation Initiation Factor
DJ40_1540	COG1238	metal cluster binding
DJ40_1541	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ40_1547	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DJ40_1555	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DJ40_1556	COG3958	Transketolase
DJ40_1557	COG3959	Transketolase, thiamine diphosphate binding domain
DJ40_1558	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_1559	COG1129	ABC transporter
DJ40_1563	COG3783	Cytochrome b(562)
DJ40_1564	COG3038	cytochrome b561
DJ40_1565	COG3381	protein complex oligomerization
DJ40_1566	COG3302	dmso reductase anchor subunit
DJ40_1567	COG0437	4 iron, 4 sulfur cluster binding
DJ40_1568	COG0243	molybdopterin cofactor binding
DJ40_1569	COG0235	Class ii aldolase
DJ40_157	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
DJ40_1570	COG1349	DNA-binding transcription factor activity
DJ40_1572	COG1129	ABC transporter
DJ40_1573	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_1574	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_1575	COG3623	hexulose-6-phosphate isomerase
DJ40_1576	COG1070	Carbohydrate kinase
DJ40_1577	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DJ40_1577	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DJ40_1579	COG0024	Methionine aminopeptidase
DJ40_158	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
DJ40_1581	COG4771	TonB-dependent receptor
DJ40_1583	COG1858	cytochrome C peroxidase
DJ40_1584	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ40_1588	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
DJ40_159	COG0671	phosphoesterase, PA-phosphatase related
DJ40_1591	COG2376	Dihydroxyacetone kinase
DJ40_1592	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_1593	COG1063	alcohol dehydrogenase
DJ40_1594	COG0698	ribose 5-phosphate isomerase
DJ40_1596	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DJ40_1597	COG1388	LysM domain
DJ40_1597	COG4942	peptidase
DJ40_16	COG4989	oxidoreductase activity
DJ40_160	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DJ40_1605	COG0529	Catalyzes the synthesis of activated sulfate
DJ40_161	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DJ40_1611	COG1943	Transposase
DJ40_1615	COG0720	synthase
DJ40_1616	COG0602	queuosine metabolic process
DJ40_1620	COG3956	TIGRFAM MazG family protein
DJ40_1621	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJ40_1622	COG2205	protein histidine kinase activity
DJ40_1622	COG4999	Histidine kinase
DJ40_1622	COG3437	response regulator, receiver
DJ40_1622	COG3850	Histidine kinase
DJ40_1623	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ40_1627	COG2860	membrane
DJ40_163	COG0583	DNA-binding transcription factor activity
DJ40_1631	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ40_1632	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DJ40_1633	COG1120	ATPase activity
DJ40_1634	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DJ40_1635	COG1643	Atp-dependent helicase
DJ40_1636	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
DJ40_1638	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DJ40_164	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DJ40_1640	COG0617	tRNA 3'-terminal CCA addition
DJ40_1641	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DJ40_1645	COG0726	polysaccharide deacetylase
DJ40_1646	COG0842	Transport permease protein
DJ40_1647	COG1131	(ABC) transporter
DJ40_1648	COG0288	reversible hydration of carbon dioxide
DJ40_1649	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
DJ40_1650	COG2132	Multicopper oxidase
DJ40_1654	COG0697	spore germination
DJ40_1656	COG1049	propionate catabolic process, 2-methylcitrate cycle
DJ40_1657	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ40_1658	COG0508	dehydrogenase complex catalyzes the overall conversion of
DJ40_1659	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
DJ40_1660	COG2186	Transcriptional regulator
DJ40_1661	COG1113	amino acid transport
DJ40_1662	COG3725	Membrane protein required for beta-lactamase induction
DJ40_1663	COG3023	N-Acetylmuramoyl-L-alanine amidase
DJ40_1665	COG4969	Belongs to the N-Me-Phe pilin family
DJ40_1666	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DJ40_1667	COG1459	type II secretion system
DJ40_1669	COG0237	dephospho-CoA kinase activity
DJ40_167	COG0616	signal peptide processing
DJ40_1672	COG0494	nUDIX hydrolase
DJ40_1677	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DJ40_1678	COG0849	cell division
DJ40_1679	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DJ40_168	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_1683	COG0772	Belongs to the SEDS family
DJ40_1686	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DJ40_1687	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DJ40_1688	COG0768	penicillin binding
DJ40_1689	COG3116	cell division
DJ40_1693	COG1609	Transcriptional regulator
DJ40_1695	COG0028	Belongs to the TPP enzyme family
DJ40_1696	COG1022	Amp-dependent synthetase and ligase
DJ40_170	COG1187	pseudouridine synthase activity
DJ40_1700	COG0473	3-isopropylmalate dehydrogenase activity
DJ40_1703	COG2814	Major facilitator Superfamily
DJ40_1706	COG4143	(ABC) transporter
DJ40_1707	COG1178	ABC-type Fe3 transport system permease component
DJ40_1709	COG0586	Pfam SNARE associated Golgi protein
DJ40_171	COG0009	L-threonylcarbamoyladenylate synthase
DJ40_1710	COG0417	DNA replication proofreading
DJ40_1714	COG2885	chlorophyll binding
DJ40_1714	COG3047	cAMP biosynthetic process
DJ40_1721	COG3501	Rhs element vgr protein
DJ40_1731	COG0564	pseudouridine synthase activity
DJ40_1734	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ40_174	COG0512	Glutamine amidotransferase of anthranilate synthase
DJ40_1740	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DJ40_1742	COG2966	Psort location CytoplasmicMembrane, score
DJ40_1744	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DJ40_1745	COG0505	Belongs to the CarA family
DJ40_1748	COG1047	Peptidyl-prolyl cis-trans
DJ40_1751	COG0196	riboflavin kinase activity
DJ40_1753	COG0583	DNA-binding transcription factor activity
DJ40_1757	COG1584	GPR1 FUN34 yaaH family protein
DJ40_176	COG0134	indole-3-glycerol-phosphate synthase activity
DJ40_176	COG0135	phosphoribosylanthranilate isomerase activity
DJ40_1762	COG0521	Mo-molybdopterin cofactor biosynthetic process
DJ40_1770	COG0745	RESPONSE REGULATOR receiver
DJ40_1771	COG3045	CreA protein
DJ40_1774	COG3708	Transcriptional regulator
DJ40_1774	COG2207	Transcriptional regulator
DJ40_1775	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
DJ40_1777	COG0741	lytic transglycosylase activity
DJ40_1780	COG2199	diguanylate cyclase activity
DJ40_1781	COG2885	chlorophyll binding
DJ40_1782	COG0488	(ABC) transporter
DJ40_1786	COG0560	Phosphoserine phosphatase
DJ40_1787	COG3726	membrane protein affecting hemolysin expression
DJ40_1791	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DJ40_1792	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DJ40_1793	COG0084	hydrolase, TatD family'
DJ40_1794	COG4667	esterase of the alpha-beta hydrolase superfamily
DJ40_1796	COG2823	Periplasmic or secreted lipoprotein
DJ40_1798	COG0456	acetyltransferase
DJ40_1799	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
DJ40_18	COG3133	Outer membrane lipoprotein
DJ40_180	COG3047	cAMP biosynthetic process
DJ40_1805	COG3706	GGDEF domain
DJ40_1808	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ40_1809	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ40_1812	COG0859	PFAM glycosyl transferase family 9
DJ40_1814	COG2390	Transcriptional regulator
DJ40_1822	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DJ40_1822	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ40_1822	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ40_1823	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJ40_1824	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJ40_1825	COG2207	Transcriptional regulator
DJ40_1826	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJ40_1828	COG4269	membrane
DJ40_1832	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
DJ40_1834	COG0582	viral genome integration into host DNA
DJ40_1835	COG0582	viral genome integration into host DNA
DJ40_184	COG1607	acyl-coa hydrolase
DJ40_1841	COG3157	Type VI secretion system effector, Hcp
DJ40_185	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
DJ40_1852	COG0582	viral genome integration into host DNA
DJ40_1854	COG0795	lipopolysaccharide-transporting ATPase activity
DJ40_1855	COG0795	lipopolysaccharide-transporting ATPase activity
DJ40_1857	COG2927	DNA polymerase III (CHI subunit)
DJ40_1860	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
DJ40_1862	COG2731	YhcH YjgK YiaL family protein
DJ40_1864	COG0601	transmembrane transport
DJ40_1865	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJ40_1866	COG0444	Belongs to the ABC transporter superfamily
DJ40_1867	COG4608	Belongs to the ABC transporter superfamily
DJ40_187	COG2350	Protein conserved in bacteria
DJ40_1870	COG2188	Transcriptional regulator
DJ40_1871	COG3624	Phosphonate C-P lyase system protein PhnG
DJ40_1872	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
DJ40_1873	COG3626	phosphonate metabolism
DJ40_1874	COG3627	carbon phosphorus lyase activity
DJ40_1875	COG4107	phosphonate C-P lyase system protein PhnK
DJ40_1876	COG4778	phosphonate C-P lyase system protein PhnL
DJ40_1877	COG3454	Phosphonate metabolism
DJ40_1878	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
DJ40_1879	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DJ40_1880	COG0702	epimerase
DJ40_1883	COG3842	ATPase activity
DJ40_1884	COG0395	ABC-type sugar transport system, permease component
DJ40_1891	COG3153	acetyltransferase
DJ40_1896	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ40_1899	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ40_1902	COG0513	Belongs to the DEAD box helicase family
DJ40_1909	COG0195	Participates in both transcription termination and antitermination
DJ40_1913	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DJ40_1915	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DJ40_1916	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DJ40_1918	COG1534	Rna-binding protein
DJ40_1919	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ40_1920	COG2027	D-alanyl-D-alanine carboxypeptidase
DJ40_1921	COG0745	RESPONSE REGULATOR receiver
DJ40_1922	COG0642	Histidine kinase
DJ40_1928	COG3157	Type VI secretion system effector, Hcp
DJ40_1938	COG0697	spore germination
DJ40_194	COG4608	Belongs to the ABC transporter superfamily
DJ40_1941	COG0142	geranyltranstransferase activity
DJ40_1943	COG3423	Transcriptional regulator
DJ40_1947	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DJ40_1949	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DJ40_1950	COG2105	PFAM AIG2 family protein
DJ40_1951	COG2911	Protein conserved in bacteria
DJ40_1952	COG0729	surface antigen
DJ40_1954	COG1253	flavin adenine dinucleotide binding
DJ40_1956	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
DJ40_1958	COG0737	Belongs to the 5'-nucleotidase family
DJ40_1960	COG0545	Peptidyl-prolyl cis-trans isomerase
DJ40_1961	COG3061	Opacity-associated protein A
DJ40_1964	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DJ40_1965	COG0360	Binds together with S18 to 16S ribosomal RNA
DJ40_1967	COG1073	alpha beta
DJ40_1968	COG3650	response to hydrogen peroxide
DJ40_1969	COG1960	acyl-CoA dehydrogenase activity
DJ40_197	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJ40_1970	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJ40_1971	COG0557	exoribonuclease II activity
DJ40_1974	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
DJ40_1975	COG0330	HflC and HflK could
DJ40_1976	COG0330	HflC and HflK could
DJ40_1977	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DJ40_198	COG0601	transmembrane transport
DJ40_1981	COG0860	N-Acetylmuramoyl-L-alanine amidase
DJ40_1982	COG0802	atpase or kinase
DJ40_1983	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DJ40_1983	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DJ40_1984	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DJ40_1989	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
DJ40_1992	COG1511	domain protein
DJ40_1992	COG3264	Mechanosensitive ion channel
DJ40_1994	COG1053	succinate dehydrogenase
DJ40_1995	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DJ40_1997	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
DJ40_1998	COG2076	Multidrug Resistance protein
DJ40_2	COG0583	DNA-binding transcription factor activity
DJ40_20	COG3895	Periplasmic Protein
DJ40_200	COG2095	MarC family integral membrane protein
DJ40_2006	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
DJ40_2009	COG3383	formate dehydrogenase (NAD+) activity
DJ40_201	COG1012	belongs to the aldehyde dehydrogenase family
DJ40_201	COG1454	alcohol dehydrogenase
DJ40_2010	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ40_2011	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ40_2011	COG0493	'glutamate synthase
DJ40_2012	COG1309	transcriptional regulator
DJ40_202	COG1435	thymidine kinase activity
DJ40_2027	COG1454	alcohol dehydrogenase
DJ40_2029	COG0629	single-stranded DNA binding
DJ40_2030	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DJ40_2031	COG2315	Protein conserved in bacteria
DJ40_2032	COG1448	Aminotransferase
DJ40_2033	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DJ40_2034	COG0305	Participates in initiation and elongation during chromosome replication
DJ40_2037	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJ40_2038	COG0735	belongs to the Fur family
DJ40_2040	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
DJ40_2048	COG3121	Chaperone
DJ40_206	COG0745	RESPONSE REGULATOR receiver
DJ40_2060	COG1358	cellular component organization or biogenesis
DJ40_2065	COG3721	Heme iron utilization protein
DJ40_2066	COG0702	epimerase
DJ40_2068	COG4771	TonB-dependent receptor
DJ40_2069	COG3720	iron ion transport
DJ40_2070	COG4558	Periplasmic binding protein
DJ40_2071	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ40_2073	COG0626	cystathionine gamma-synthase activity
DJ40_2074	COG0814	amino acid
DJ40_2075	COG0583	DNA-binding transcription factor activity
DJ40_2076	COG0425	Belongs to the sulfur carrier protein TusA family
DJ40_2077	COG2391	methyltransferase activity
DJ40_208	COG0788	formyltetrahydrofolate deformylase activity
DJ40_2098	COG1301	dicarboxylic acid transport
DJ40_210	COG0583	DNA-binding transcription factor activity
DJ40_2100	COG3162	membrane
DJ40_2103	COG2801	Transposase and inactivated derivatives
DJ40_211	COG0708	Exodeoxyribonuclease III
DJ40_2112	COG0151	Belongs to the GarS family
DJ40_2115	COG3068	Protein conserved in bacteria
DJ40_212	COG0494	nUDIX hydrolase
DJ40_2121	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DJ40_2123	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DJ40_2134	COG0250	Participates in transcription elongation, termination and antitermination
DJ40_2135	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DJ40_214	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DJ40_2150	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
DJ40_2151	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DJ40_2152	COG1739	Uncharacterized protein family UPF0029
DJ40_216	COG0778	Nitroreductase
DJ40_2161	COG0805	protein transport
DJ40_2163	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DJ40_2167	COG1322	Protein conserved in bacteria
DJ40_2168	COG0586	Pfam SNARE associated Golgi protein
DJ40_2169	COG1966	Carbon starvation protein
DJ40_217	COG0616	signal peptide processing
DJ40_2171	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
DJ40_2172	COG0412	Dienelactone hydrolase
DJ40_2175	COG0583	DNA-binding transcription factor activity
DJ40_2176	COG0679	Auxin Efflux Carrier
DJ40_2177	COG0584	glycerophosphoryl diester phosphodiesterase
DJ40_218	COG0252	asparaginase activity
DJ40_219	COG1335	isochorismatase
DJ40_2190	COG0410	ABC transporter
DJ40_2191	COG0411	ABC transporter
DJ40_2192	COG4177	L-phenylalanine transmembrane transporter activity
DJ40_2193	COG0559	Belongs to the binding-protein-dependent transport system permease family
DJ40_2194	COG0683	leucine binding
DJ40_2197	COG2177	Part of the ABC transporter FtsEX involved in
DJ40_2198	COG2884	Cell division ATP-binding protein ftsE
DJ40_2199	COG0552	protein localization to endoplasmic reticulum
DJ40_2199	COG0552	protein localization to endoplasmic reticulum
DJ40_220	COG3139	Protein of unknown function (DUF1315)
DJ40_2200	COG0742	ribosomal rna small subunit methyltransferase
DJ40_2201	COG3776	membrane
DJ40_2204	COG3714	YhhN family
DJ40_2207	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
DJ40_2209	COG0247	lactate metabolic process
DJ40_2211	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DJ40_2212	COG0584	glycerophosphoryl diester phosphodiesterase
DJ40_2214	COG0561	phosphatase activity
DJ40_2215	COG2267	carboxylic ester hydrolase activity
DJ40_2216	COG1280	lysine exporter protein (LysE YggA)
DJ40_2217	COG1280	lysine exporter protein (LysE YggA)
DJ40_2218	COG0514	ATP-dependent DNA helicase (RecQ)
DJ40_2219	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
DJ40_2220	COG2050	protein possibly involved in aromatic compounds catabolism
DJ40_2222	COG0598	Magnesium transport protein CorA
DJ40_2223	COG5564	TIM-barrel signal transduction protein
DJ40_2224	COG5441	Belongs to the UPF0261 family
DJ40_2226	COG0210	DNA helicase
DJ40_2227	COG1011	Hydrolase
DJ40_2228	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DJ40_2229	COG3159	Protein conserved in bacteria
DJ40_2231	COG5567	small periplasmic lipoprotein
DJ40_2234	COG3072	Adenylate cyclase
DJ40_2236	COG1587	Uroporphyrinogen-III synthase
DJ40_2237	COG2959	enzyme of heme biosynthesis
DJ40_2238	COG3071	HemY protein
DJ40_224	COG3713	MltA-interacting MipA family protein
DJ40_2244	COG1113	amino acid transport
DJ40_2248	COG2244	polysaccharide biosynthetic process
DJ40_2249	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DJ40_225	COG2766	serine protein kinase
DJ40_2250	COG0456	acetyltransferase
DJ40_2251	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
DJ40_2252	COG1088	dTDP-glucose 4,6-dehydratase activity
DJ40_2253	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DJ40_2254	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DJ40_2255	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
DJ40_2256	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DJ40_2257	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DJ40_2258	COG3118	belongs to the thioredoxin family
DJ40_2262	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ40_2265	COG3121	Chaperone
DJ40_2268	COG3121	Chaperone
DJ40_2272	COG0583	DNA-binding transcription factor activity
DJ40_228	COG0583	DNA-binding transcription factor activity
DJ40_2280	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DJ40_2281	COG3978	acetolactate synthase activity
DJ40_2284	COG3085	chromosome segregation
DJ40_2285	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_2287	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_2288	COG1129	ABC transporter
DJ40_2289	COG1879	ABC-type sugar transport system periplasmic component
DJ40_230	COG2814	Major facilitator Superfamily
DJ40_2304	COG0678	peroxiredoxin activity
DJ40_2304	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DJ40_2305	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ40_2318	COG0460	homoserine dehydrogenase
DJ40_2318	COG0527	aspartate kinase activity
DJ40_2319	COG0626	cystathionine gamma-synthase activity
DJ40_232	COG2719	SpoVR family
DJ40_2320	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
DJ40_2321	COG4682	membrane
DJ40_2323	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DJ40_2325	COG1609	Transcriptional regulator
DJ40_2326	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DJ40_2329	COG1575	Belongs to the MenA family. Type 1 subfamily
DJ40_2336	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DJ40_2337	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DJ40_2338	COG1494	fructose-1,6-bisphosphatase
DJ40_2340	COG3152	Membrane
DJ40_2343	COG0583	DNA-binding transcription factor activity
DJ40_2344	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DJ40_2345	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DJ40_2346	COG0471	metal ion transport
DJ40_2348	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DJ40_2352	COG3678	ATP-independent chaperone mediated protein folding
DJ40_2353	COG0745	RESPONSE REGULATOR receiver
DJ40_2354	COG2205	protein histidine kinase activity
DJ40_2355	COG2169	Transcriptional regulator
DJ40_2355	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJ40_2356	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DJ40_2357	COG1045	serine acetyltransferase
DJ40_236	COG1943	Transposase
DJ40_2360	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DJ40_2361	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DJ40_2363	COG4942	peptidase
DJ40_2364	COG2861	carbohydrate metabolic process
DJ40_2366	COG0156	8-amino-7-oxononanoate synthase activity
DJ40_2368	COG0859	PFAM glycosyl transferase family 9
DJ40_2369	COG0859	PFAM glycosyl transferase family 9
DJ40_2370	COG1519	Transferase
DJ40_2374	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DJ40_2377	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DJ40_2382	COG1561	YicC-like family, N-terminal region
DJ40_2383	COG2860	membrane
DJ40_2384	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DJ40_2386	COG1758	RNA polymerase activity
DJ40_2387	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJ40_2388	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJ40_2389	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DJ40_239	COG1104	cysteine desulfurase activity
DJ40_2390	COG0786	glutamate:sodium symporter activity
DJ40_2391	COG2233	PERMEase
DJ40_2392	COG2982	Protein involved in outer membrane biogenesis
DJ40_2393	COG0456	acetyltransferase
DJ40_2396	COG1011	Hydrolase
DJ40_2398	COG0174	glutamine synthetase
DJ40_2399	COG3852	Histidine kinase
DJ40_24	COG0625	glutathione transferase activity
DJ40_2401	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJ40_2404	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DJ40_2404	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DJ40_2405	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DJ40_2406	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DJ40_2407	COG3084	Protein conserved in bacteria
DJ40_2409	COG1763	Mo-molybdopterin cofactor biosynthetic process
DJ40_2410	COG3328	transposase activity
DJ40_2416	COG2186	Transcriptional regulator
DJ40_2418	COG0477	Major facilitator Superfamily
DJ40_2419	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ40_242	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJ40_2425	COG1522	sequence-specific DNA binding
DJ40_2426	COG0716	FMN binding
DJ40_2429	COG3312	ion transport
DJ40_243	COG2951	lytic endotransglycosylase activity
DJ40_2439	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DJ40_2441	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DJ40_2442	COG0573	inorganic phosphate transmembrane transporter activity
DJ40_2443	COG0581	inorganic phosphate transmembrane transporter activity
DJ40_2445	COG0704	Plays a role in the regulation of phosphate uptake
DJ40_2447	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ40_2448	COG0765	amino acid transport
DJ40_2449	COG0765	amino acid transport
DJ40_2450	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ40_2451	COG2252	PERMEase
DJ40_2456	COG0706	membrane insertase activity
DJ40_2459	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DJ40_2462	COG0592	DNA-directed DNA polymerase activity
DJ40_2463	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DJ40_2464	COG0187	DNA topoisomerase II activity
DJ40_2465	COG0561	phosphatase activity
DJ40_2467	COG2423	ornithine cyclodeaminase activity
DJ40_2468	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DJ40_2469	COG0823	Involved in the tonB-independent uptake of proteins
DJ40_247	COG2894	cell division
DJ40_2470	COG0823	Involved in the tonB-independent uptake of proteins
DJ40_2471	COG5645	(Lipo)protein
DJ40_2475	COG3977	Valine--pyruvate aminotransferase
DJ40_2479	COG0366	Alpha amylase catalytic
DJ40_248	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
DJ40_2482	COG2885	chlorophyll binding
DJ40_2484	COG2818	Glycosylase
DJ40_2488	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ40_2488	COG2213	PTS system mannitol-specific
DJ40_249	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
DJ40_2490	COG3722	fumarate hydratase activity
DJ40_2496	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DJ40_2498	COG3383	formate dehydrogenase (NAD+) activity
DJ40_2498	COG0243	molybdopterin cofactor binding
DJ40_2499	COG3383	formate dehydrogenase (NAD+) activity
DJ40_2499	COG0243	molybdopterin cofactor binding
DJ40_250	COG0318	PFAM AMP-dependent synthetase and ligase
DJ40_2500	COG0437	4 iron, 4 sulfur cluster binding
DJ40_2501	COG2864	formate dehydrogenase
DJ40_2504	COG3276	selenocysteine insertion sequence binding
DJ40_2509	COG3274	enterobacterial common antigen metabolic process
DJ40_251	COG3065	identical protein binding
DJ40_2511	COG3188	usher protein
DJ40_2512	COG3121	Chaperone
DJ40_2514	COG1070	Carbohydrate kinase
DJ40_2516	COG4213	ABC transporter substrate-binding protein
DJ40_2518	COG4214	carbohydrate transport
DJ40_2519	COG1609	Transcriptional regulator
DJ40_2519	COG2207	Transcriptional regulator
DJ40_2521	COG0582	viral genome integration into host DNA
DJ40_253	COG1199	ATP-dependent helicase activity
DJ40_2530	COG4604	ABC transporter, ATP-binding protein
DJ40_2532	COG4605	iron ion homeostasis
DJ40_2534	COG4607	ABC-type enterochelin transport system periplasmic component
DJ40_2537	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DJ40_254	COG0251	oxidation-reduction process
DJ40_2540	COG2986	histidine ammonia-lyase
DJ40_2543	COG2194	sulfuric ester hydrolase activity
DJ40_2544	COG2197	response regulator
DJ40_2545	COG3851	Histidine kinase
DJ40_2546	COG2271	Major facilitator Superfamily
DJ40_2550	COG2831	hemolysin activation secretion protein
DJ40_2552	COG0747	negative chemotaxis
DJ40_2553	COG0601	transmembrane transport
DJ40_2554	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJ40_2555	COG0444	Belongs to the ABC transporter superfamily
DJ40_2556	COG4608	Belongs to the ABC transporter superfamily
DJ40_2557	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
DJ40_2558	COG2199	diguanylate cyclase activity
DJ40_2558	COG2200	EAL domain
DJ40_2559	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DJ40_2563	COG0612	Peptidase, M16
DJ40_2564	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ40_2565	COG1942	4-Oxalocrotonate Tautomerase
DJ40_2566	COG2200	EAL domain
DJ40_2567	COG2982	Protein involved in outer membrane biogenesis
DJ40_2568	COG2134	cdp-diacylglycerol pyrophosphatase
DJ40_2569	COG1295	ribonuclease BN
DJ40_257	COG0800	Aldolase
DJ40_2574	COG1929	Belongs to the glycerate kinase type-1 family
DJ40_2575	COG2610	gluconate transmembrane transporter activity
DJ40_2576	COG3835	regulator
DJ40_2577	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ40_2578	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DJ40_2579	COG0339	signal peptide processing
DJ40_2583	COG0589	response to stress
DJ40_2585	COG0306	phosphate transporter
DJ40_2586	COG2081	HI0933 family
DJ40_2589	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_259	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DJ40_2590	COG1879	ABC-type sugar transport system periplasmic component
DJ40_2592	COG0191	fructose-bisphosphate aldolase activity
DJ40_2594	COG0745	RESPONSE REGULATOR receiver
DJ40_2595	COG1741	Belongs to the pirin family
DJ40_2596	COG1609	Transcriptional regulator
DJ40_2597	COG2610	gluconate transmembrane transporter activity
DJ40_2598	COG3265	gluconokinase activity
DJ40_260	COG1737	Transcriptional regulator
DJ40_2600	COG3157	Type VI secretion system effector, Hcp
DJ40_2604	COG2095	MarC family integral membrane protein
DJ40_2605	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DJ40_2607	COG3275	phosphorelay sensor kinase activity
DJ40_261	COG0469	pyruvate kinase activity
DJ40_2612	COG0058	SHG alpha-glucan phosphorylase activity
DJ40_2613	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DJ40_2616	COG1349	DNA-binding transcription factor activity
DJ40_262	COG1560	Kdo2-lipid A biosynthetic process
DJ40_2620	COG0058	SHG alpha-glucan phosphorylase activity
DJ40_2621	COG1640	4-alpha-glucanotransferase
DJ40_2628	COG1918	ferrous iron import across plasma membrane
DJ40_2629	COG2183	response to ionizing radiation
DJ40_263	COG0739	heme binding
DJ40_2630	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ40_2631	COG0745	RESPONSE REGULATOR receiver
DJ40_2635	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DJ40_2636	COG1011	Hydrolase
DJ40_2639	COG0494	nUDIX hydrolase
DJ40_264	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
DJ40_2640	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DJ40_2645	COG4796	Type ii and iii secretion system protein
DJ40_2650	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DJ40_2651	COG0546	phosphoglycolate phosphatase activity
DJ40_2652	COG0180	Tryptophanyl-tRNA synthetase
DJ40_2655	COG2146	nitrite reductase [NAD(P)H] activity
DJ40_2656	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ40_2657	COG0402	S-adenosylhomocysteine deaminase activity
DJ40_266	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJ40_2661	COG1486	melibiose metabolic process
DJ40_2662	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DJ40_2663	COG0433	COG0433 Predicted ATPase
DJ40_2666	COG1289	transmembrane transporter activity
DJ40_2668	COG1765	OsmC-like protein
DJ40_2670	COG3954	Phosphoribulokinase
DJ40_2672	COG0429	hydrolase of the alpha beta-hydrolase fold
DJ40_2674	COG4521	taurine ABC transporter
DJ40_2676	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJ40_2677	COG2175	clavaminate synthase activity
DJ40_2680	COG1216	Glycosyl transferase, family 2
DJ40_2681	COG0488	(ABC) transporter
DJ40_2684	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
DJ40_2685	COG1047	Peptidyl-prolyl cis-trans
DJ40_2687	COG0545	Peptidyl-prolyl cis-trans isomerase
DJ40_2688	COG2964	Protein conserved in bacteria
DJ40_2692	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DJ40_2693	COG0049	tRNA binding
DJ40_2698	COG0051	transcription antitermination factor activity, RNA binding
DJ40_27	COG3104	oligopeptide transport
DJ40_2703	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DJ40_2705	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DJ40_2706	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DJ40_2708	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DJ40_2709	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DJ40_271	COG0494	nUDIX hydrolase
DJ40_2717	COG1841	ribosomal large subunit assembly
DJ40_2719	COG0201	protein transport
DJ40_2720	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DJ40_2723	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DJ40_2726	COG0789	Transcriptional regulator
DJ40_2727	COG3036	rescue of stalled ribosome
DJ40_2729	COG0569	domain protein
DJ40_273	COG1801	Protein of unknown function DUF72
DJ40_2736	COG0551	DNA topoisomerase type I activity
DJ40_2739	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DJ40_274	COG3788	relative of glutathione S-transferase, MAPEG superfamily
DJ40_2747	COG3328	transposase activity
DJ40_2750	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DJ40_2751	COG2224	Isocitrate lyase
DJ40_2753	COG1414	Transcriptional regulator
DJ40_2756	COG0527	aspartate kinase activity
DJ40_2759	COG3833	ABC-type maltose transport systems, permease component
DJ40_2760	COG1175	transmembrane transport
DJ40_278	COG3102	Protein conserved in bacteria
DJ40_2783	COG3501	Rhs element vgr protein
DJ40_2785	COG3209	COG3209 Rhs family protein
DJ40_2791	COG3501	Rhs element vgr protein
DJ40_2793	COG3209	COG3209 Rhs family protein
DJ40_2799	COG3209	COG3209 Rhs family protein
DJ40_2802	COG0673	inositol 2-dehydrogenase activity
DJ40_2803	COG2207	Transcriptional regulator
DJ40_2804	COG1869	D-ribose catabolic process
DJ40_2805	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ40_2807	COG0431	NADPH-dependent FMN reductase
DJ40_2808	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DJ40_2810	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJ40_2812	COG3077	Addiction module antitoxin, RelB DinJ family
DJ40_2813	COG2252	PERMEase
DJ40_2814	COG0025	NhaP-type Na H and K H
DJ40_2816	COG1560	Kdo2-lipid A biosynthetic process
DJ40_2818	COG1129	ABC transporter
DJ40_2819	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_2821	COG1069	ribulokinase activity
DJ40_2823	COG0625	glutathione transferase activity
DJ40_2826	COG1278	Cold shock
DJ40_2827	COG1278	Cold shock
DJ40_2828	COG1278	Cold shock
DJ40_2829	COG3133	Outer membrane lipoprotein
DJ40_283	COG0728	peptidoglycan biosynthetic process
DJ40_2830	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ40_2832	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJ40_2836	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
DJ40_2837	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJ40_2839	COG4145	pantothenate transmembrane transporter activity
DJ40_2840	COG3924	membrane
DJ40_2842	COG0439	Biotin carboxylase
DJ40_2843	COG0511	ligase activity, forming carbon-carbon bonds
DJ40_2846	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DJ40_2847	COG0604	alcohol dehydrogenase
DJ40_2848	COG2199	diguanylate cyclase activity
DJ40_2848	COG2200	EAL domain
DJ40_2849	COG1077	Cell shape determining protein MreB Mrl
DJ40_2850	COG1792	Involved in formation and maintenance of cell shape
DJ40_2851	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
DJ40_2853	COG1530	ribonuclease E activity
DJ40_2856	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ40_2857	COG0312	modulator of DNA gyrase
DJ40_286	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJ40_2867	COG0583	DNA-binding transcription factor activity
DJ40_2871	COG1012	belongs to the aldehyde dehydrogenase family
DJ40_2875	COG2732	(Barnase) inhibitor
DJ40_2877	COG0312	modulator of DNA gyrase
DJ40_2879	COG3783	Cytochrome b(562)
DJ40_2880	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ40_2881	COG0366	Alpha amylase catalytic
DJ40_2882	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJ40_2882	COG1263	PTS System
DJ40_2883	COG1609	Transcriptional regulator
DJ40_2888	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ40_289	COG3381	protein complex oligomerization
DJ40_2890	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ40_2892	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DJ40_2893	COG1137	ATPase activity
DJ40_2894	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DJ40_2895	COG3117	lipopolysaccharide transmembrane transporter activity
DJ40_2896	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DJ40_2897	COG0517	IMP dehydrogenase activity
DJ40_2897	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DJ40_2898	COG0530	calcium, potassium:sodium antiporter activity
DJ40_2899	COG1127	ABC transporter
DJ40_29	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJ40_29	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJ40_2900	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DJ40_2901	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DJ40_2902	COG2854	intermembrane phospholipid transfer
DJ40_2903	COG3113	response to antibiotic
DJ40_2904	COG5007	Belongs to the BolA IbaG family
DJ40_2906	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ40_2907	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ40_2908	COG3105	Protein conserved in bacteria
DJ40_2910	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DJ40_2913	COG0625	glutathione transferase activity
DJ40_2914	COG2969	positive regulation of protein catabolic process
DJ40_2916	COG0493	'glutamate synthase
DJ40_2917	COG0069	glutamate synthase activity
DJ40_2917	COG0067	glutamate synthase
DJ40_2917	COG0070	glutamate synthase
DJ40_2919	COG1242	4 iron, 4 sulfur cluster binding
DJ40_292	COG1940	carbohydrate kinase activity
DJ40_2921	COG2198	Histidine kinase
DJ40_2921	COG5002	protein histidine kinase activity
DJ40_2921	COG0784	Response regulator, receiver
DJ40_2922	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
DJ40_2924	COG2823	Periplasmic or secreted lipoprotein
DJ40_2928	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DJ40_2929	COG1741	Belongs to the pirin family
DJ40_293	COG0584	glycerophosphoryl diester phosphodiesterase
DJ40_2930	COG0583	DNA-binding transcription factor activity
DJ40_2931	COG0435	Glutathione S-transferase
DJ40_2932	COG2259	Doxx family
DJ40_2934	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
DJ40_2935	COG4575	ribosome binding
DJ40_2938	COG0586	Pfam SNARE associated Golgi protein
DJ40_2941	COG2271	Major facilitator Superfamily
DJ40_2943	COG0246	Mannitol dehydrogenase
DJ40_2944	COG2721	sulfolactate sulfo-lyase activity
DJ40_2947	COG0673	inositol 2-dehydrogenase activity
DJ40_2948	COG1451	nucleotide metabolic process
DJ40_295	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ40_2951	COG1902	pentaerythritol trinitrate reductase activity
DJ40_2951	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ40_2952	COG3247	response to pH
DJ40_2955	COG4245	von Willebrand factor, type A
DJ40_2958	COG4245	von Willebrand factor, type A
DJ40_2959	COG2831	hemolysin activation secretion protein
DJ40_296	COG3833	ABC-type maltose transport systems, permease component
DJ40_2960	COG3210	domain, Protein
DJ40_2961	COG3210	domain, Protein
DJ40_2969	COG3210	domain, Protein
DJ40_2971	COG3210	domain, Protein
DJ40_2975	COG3842	ATPase activity
DJ40_2976	COG3459	Glycosyltransferase 36 associated
DJ40_2977	COG1609	Transcriptional regulator
DJ40_2978	COG1653	transport
DJ40_2980	COG0395	ABC-type sugar transport system, permease component
DJ40_2984	COG1289	transmembrane transporter activity
DJ40_2992	COG0251	oxidation-reduction process
DJ40_30	COG4172	Belongs to the ABC transporter superfamily
DJ40_3006	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DJ40_3007	COG0358	DNA primase activity
DJ40_301	COG0659	secondary active sulfate transmembrane transporter activity
DJ40_3011	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DJ40_3014	COG4991	sh3 domain protein
DJ40_3015	COG3025	triphosphatase activity
DJ40_3018	COG0531	amino acid
DJ40_3021	COG3384	dioxygenase
DJ40_3022	COG0754	glutathionylspermidine amidase activity
DJ40_3025	COG1538	Outer membrane efflux protein
DJ40_3026	COG0494	nUDIX hydrolase
DJ40_3027	COG3151	Protein conserved in bacteria
DJ40_3028	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DJ40_3029	COG3150	esterase
DJ40_303	COG2912	Transglutaminase-like superfamily
DJ40_3030	COG0187	DNA topoisomerase II activity
DJ40_3031	COG0583	DNA-binding transcription factor activity
DJ40_3032	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJ40_3033	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DJ40_3034	COG0204	Acyl-transferase
DJ40_3035	COG2132	Multicopper oxidase
DJ40_3039	COG0656	L-ascorbic acid biosynthetic process
DJ40_304	COG3094	Invasion gene expression up-regulator, SirB
DJ40_3040	COG1979	alcohol dehydrogenase
DJ40_3041	COG2207	Transcriptional regulator
DJ40_3042	COG0586	Pfam SNARE associated Golgi protein
DJ40_3043	COG0626	cystathionine gamma-synthase activity
DJ40_3044	COG0811	peptide transport
DJ40_3045	COG0848	biopolymer transport protein
DJ40_305	COG2890	protein-(glutamine-N5) methyltransferase activity
DJ40_3055	COG4964	Belongs to the GSP D family
DJ40_3063	COG3397	chitin binding
DJ40_3065	COG3469	chitinase activity
DJ40_3070	COG4592	Periplasmic binding protein
DJ40_3074	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DJ40_3075	COG1684	flagellar biosynthetic protein fliR
DJ40_3076	COG1987	bacterial-type flagellum assembly
DJ40_3080	COG2204	response regulator
DJ40_3089	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
DJ40_3090	COG1815	bacterial-type flagellum-dependent cell motility
DJ40_3091	COG1558	bacterial-type flagellum-dependent cell motility
DJ40_3092	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DJ40_3093	COG1749	Flagellar hook protein flgE
DJ40_3094	COG4787	bacterial-type flagellum-dependent cell motility
DJ40_3095	COG4786	Flagellar basal body rod
DJ40_3096	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
DJ40_3099	COG1256	bacterial-type flagellum assembly
DJ40_310	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DJ40_3107	COG1191	sigma factor activity
DJ40_3108	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
DJ40_3113	COG3133	Outer membrane lipoprotein
DJ40_3114	COG3300	MHYT domain
DJ40_3114	COG5001	Diguanylate cyclase
DJ40_3120	COG3316	Transposase and inactivated derivatives
DJ40_3121	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DJ40_3122	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DJ40_313	COG0012	GTP binding
DJ40_3130	COG3316	Transposase and inactivated derivatives
DJ40_3133	COG3316	Transposase and inactivated derivatives
DJ40_3140	COG3316	Transposase and inactivated derivatives
DJ40_3142	COG2195	Cleaves the N-terminal amino acid of tripeptides
DJ40_3143	COG4771	TonB-dependent receptor
DJ40_3144	COG2226	methyltransferase
DJ40_3144	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DJ40_3144	COG3433	isochorismatase activity
DJ40_3145	COG2226	methyltransferase
DJ40_3145	COG3433	isochorismatase activity
DJ40_3145	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DJ40_3151	COG1132	(ABC) transporter
DJ40_3155	COG2610	gluconate transmembrane transporter activity
DJ40_3158	COG3501	Rhs element vgr protein
DJ40_3160	COG3209	COG3209 Rhs family protein
DJ40_3162	COG3209	COG3209 Rhs family protein
DJ40_3166	COG0471	metal ion transport
DJ40_3167	COG1609	Transcriptional regulator
DJ40_3169	COG2211	Major facilitator Superfamily
DJ40_3178	COG3916	Acyl-homoserine-lactone synthase
DJ40_3179	COG2771	luxR family
DJ40_319	COG5002	protein histidine kinase activity
DJ40_32	COG4171	peptide transport system, permease
DJ40_3220	COG4974	Belongs to the 'phage' integrase family
DJ40_3221	COG0582	viral genome integration into host DNA
DJ40_3245	COG2979	Protein of unknown function (DUF533)
DJ40_3276	COG0582	viral genome integration into host DNA
DJ40_3278	COG1982	Orn Lys Arg decarboxylase major
DJ40_3279	COG1879	ABC-type sugar transport system periplasmic component
DJ40_328	COG0500	methyltransferase
DJ40_3280	COG1129	ABC transporter
DJ40_3281	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_3287	COG1194	a g-specific adenine glycosylase
DJ40_3289	COG3171	Protein conserved in bacteria
DJ40_3290	COG2066	Belongs to the glutaminase family
DJ40_3292	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
DJ40_3292	COG3064	Membrane
DJ40_3292	COG1073	alpha beta
DJ40_3293	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJ40_3296	COG0762	integral membrane protein
DJ40_3297	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DJ40_3298	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DJ40_3299	COG2805	Type II/IV secretion system protein
DJ40_33	COG4168	peptide transport system, permease
DJ40_3301	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ40_3304	COG0189	ligase activity
DJ40_3305	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DJ40_3306	COG2356	endonuclease I
DJ40_3310	COG1166	arginine decarboxylase activity
DJ40_3312	COG0501	Belongs to the peptidase M48B family
DJ40_3313	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DJ40_3316	COG0191	fructose-bisphosphate aldolase activity
DJ40_3321	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DJ40_3322	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJ40_3323	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DJ40_3326	COG0006	proline dipeptidase activity
DJ40_3327	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ40_3328	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ40_3333	COG5295	Hep Hag repeat protein
DJ40_3335	COG1272	protein, Hemolysin III
DJ40_3338	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DJ40_3339	COG0745	RESPONSE REGULATOR receiver
DJ40_3340	COG2205	protein histidine kinase activity
DJ40_3341	COG4452	Inner membrane protein CreD
DJ40_3342	COG0716	FMN binding
DJ40_3343	COG4974	Belongs to the 'phage' integrase family
DJ40_3344	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DJ40_3345	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DJ40_3349	COG0582	viral genome integration into host DNA
DJ40_3354	COG2944	sequence-specific DNA binding
DJ40_3370	COG1695	Transcriptional regulator
DJ40_3371	COG0791	NLP P60 protein
DJ40_3373	COG1879	ABC-type sugar transport system periplasmic component
DJ40_3374	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_3375	COG1129	ABC transporter
DJ40_3377	COG2182	Extracellular solute-binding protein
DJ40_3378	COG1175	transmembrane transport
DJ40_3379	COG3833	ABC-type maltose transport systems, permease component
DJ40_3380	COG3867	Arabinogalactan endo-beta-1,4-galactanase
DJ40_3381	COG1874	Beta-galactosidase
DJ40_3382	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJ40_3382	COG1263	PTS System
DJ40_3385	COG1943	Transposase
DJ40_3387	COG2271	Major facilitator Superfamily
DJ40_3391	COG0191	fructose-bisphosphate aldolase activity
DJ40_3393	COG3119	arylsulfatase activity
DJ40_3394	COG0641	radical SAM
DJ40_3396	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_3398	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ40_3399	COG3716	PTS system mannose fructose sorbose family IID component
DJ40_34	COG4166	transmembrane transport
DJ40_3400	COG3715	PTS system
DJ40_3401	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJ40_3402	COG2222	sugar isomerase
DJ40_3404	COG1349	DNA-binding transcription factor activity
DJ40_3405	COG3119	arylsulfatase activity
DJ40_341	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ40_3410	COG0288	reversible hydration of carbon dioxide
DJ40_342	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DJ40_3428	COG0840	transmembrane signaling receptor activity
DJ40_3430	COG0583	DNA-binding transcription factor activity
DJ40_3431	COG0583	DNA-binding transcription factor activity
DJ40_3432	COG2814	Major facilitator Superfamily
DJ40_3433	COG1609	Transcriptional regulator
DJ40_3434	COG0019	diaminopimelate decarboxylase activity
DJ40_3440	COG0667	Aldo Keto reductase
DJ40_345	COG0402	S-adenosylhomocysteine deaminase activity
DJ40_3450	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
DJ40_3452	COG1074	ATP-dependent DNA helicase activity
DJ40_3453	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJ40_3455	COG0860	N-Acetylmuramoyl-L-alanine amidase
DJ40_3459	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
DJ40_3460	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DJ40_3461	COG2166	iron-sulfur cluster assembly
DJ40_3462	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DJ40_3464	COG0583	DNA-binding transcription factor activity
DJ40_3465	COG2363	Small membrane protein
DJ40_3468	COG1611	Belongs to the LOG family
DJ40_3471	COG3098	single-species biofilm formation
DJ40_3472	COG0564	pseudouridine synthase activity
DJ40_3477	COG0024	Methionine aminopeptidase
DJ40_3483	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DJ40_3484	COG0575	Belongs to the CDS family
DJ40_3485	COG0750	zinc metalloprotease
DJ40_3487	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
DJ40_3491	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ40_3493	COG0587	DNA-directed DNA polymerase activity
DJ40_3495	COG0346	lactoylglutathione lyase activity
DJ40_3498	COG4568	rho-dependent transcription termination
DJ40_35	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
DJ40_3500	COG4681	YaeQ
DJ40_3502	COG3015	lipoprotein NlpE involved in copper resistance
DJ40_3504	COG1720	tRNA m6t6A37 methyltransferase activity
DJ40_3506	COG1464	Belongs to the NlpA lipoprotein family
DJ40_3507	COG2011	ABC-type metal ion transport system permease component
DJ40_3509	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
DJ40_3516	COG0656	L-ascorbic acid biosynthetic process
DJ40_3519	COG0741	lytic transglycosylase activity
DJ40_3519	COG1388	LysM domain
DJ40_3521	COG2226	methyltransferase
DJ40_3523	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJ40_3525	COG1953	Uracil, thiamine, allantoin
DJ40_3527	COG2113	Glycine betaine
DJ40_3528	COG4176	ABC-type proline glycine betaine transport system permease component
DJ40_3529	COG4175	Glycine betaine
DJ40_3530	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DJ40_3538	COG1278	Cold shock
DJ40_3539	COG0747	negative chemotaxis
DJ40_3541	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJ40_3542	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DJ40_3543	COG1124	(ABC) transporter
DJ40_3550	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
DJ40_3552	COG4413	Urea transporter
DJ40_3553	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
DJ40_3555	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DJ40_3556	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DJ40_3558	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DJ40_3559	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DJ40_3560	COG1447	Phosphotransferase system cellobiose-specific component IIA
DJ40_3561	COG2169	Transcriptional regulator
DJ40_3561	COG1917	Cupin 2, conserved barrel domain protein
DJ40_3565	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
DJ40_3566	COG0033	Phosphoglucomutase
DJ40_3569	COG0745	RESPONSE REGULATOR receiver
DJ40_357	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ40_3570	COG2205	protein histidine kinase activity
DJ40_3575	COG3272	Protein of unknown function (DUF1722)
DJ40_3577	COG5212	phosphodiesterase
DJ40_3578	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DJ40_358	COG3850	Histidine kinase
DJ40_3580	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
DJ40_3581	COG1984	allophanate hydrolase subunit 2
DJ40_359	COG0387	Pfam Sodium calcium exchanger
DJ40_3592	COG0513	Belongs to the DEAD box helicase family
DJ40_3594	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
DJ40_3596	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
DJ40_3597	COG3026	antisigma factor binding
DJ40_3598	COG3086	response to oxidative stress
DJ40_36	COG1842	Phage shock protein A
DJ40_360	COG1702	phosphate starvation-inducible protein PhoH
DJ40_3601	COG0681	Belongs to the peptidase S26 family
DJ40_3607	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ40_3626	COG3772	lysozyme
DJ40_363	COG3658	cytochrome
DJ40_364	COG1215	transferase activity, transferring glycosyl groups
DJ40_3645	COG0741	lytic transglycosylase activity
DJ40_3645	COG0739	heme binding
DJ40_3645	COG1196	nuclear chromosome segregation
DJ40_365	COG1649	PFAM Uncharacterised BCR, COG1649
DJ40_365	COG0726	polysaccharide deacetylase
DJ40_3656	COG5301	cellulose 1,4-beta-cellobiosidase activity
DJ40_366	COG0457	Tetratricopeptide repeat
DJ40_3660	COG1737	Transcriptional regulator
DJ40_3662	COG0560	Phosphoserine phosphatase
DJ40_3663	COG0590	tRNA wobble adenosine to inosine editing
DJ40_3668	COG1943	Transposase
DJ40_3669	COG2205	protein histidine kinase activity
DJ40_367	COG0006	proline dipeptidase activity
DJ40_3670	COG3170	Tfp pilus assembly protein FimV
DJ40_3671	COG2204	response regulator
DJ40_3672	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DJ40_3672	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ40_3673	COG0347	Belongs to the P(II) protein family
DJ40_3674	COG2188	Transcriptional regulator
DJ40_3675	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ40_3675	COG1017	nitric oxide dioxygenase activity
DJ40_3678	COG3711	transcriptional antiterminator
DJ40_3679	COG2814	Major facilitator Superfamily
DJ40_3680	COG3683	transport system, periplasmic component
DJ40_3681	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
DJ40_3682	COG0483	inositol monophosphate 1-phosphatase activity
DJ40_3685	COG1104	cysteine desulfurase activity
DJ40_3686	COG0822	iron-sulfur transferase activity
DJ40_3690	COG0633	Ferredoxin
DJ40_3691	COG2975	iron-sulfur cluster assembly
DJ40_3694	COG3468	outer membrane autotransporter barrel domain protein
DJ40_3695	COG3468	outer membrane autotransporter barrel domain protein
DJ40_3703	COG2976	Protein conserved in bacteria
DJ40_3704	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJ40_3707	COG1645	bacterial-type flagellum-dependent swarming motility
DJ40_3709	COG0517	IMP dehydrogenase activity
DJ40_3709	COG0516	GMP reductase activity
DJ40_371	COG0577	efflux transmembrane transporter activity
DJ40_371	COG1136	(ABC) transporter
DJ40_3717	COG0351	phosphomethylpyrimidine kinase
DJ40_3722	COG3422	double-strand break repair
DJ40_3723	COG0745	RESPONSE REGULATOR receiver
DJ40_3724	COG2205	protein histidine kinase activity
DJ40_3729	COG3842	ATPase activity
DJ40_373	COG1136	(ABC) transporter
DJ40_373	COG0577	efflux transmembrane transporter activity
DJ40_3731	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DJ40_3733	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ40_3734	COG1177	transmembrane transport
DJ40_3736	COG0443	Heat shock 70 kDa protein
DJ40_3737	COG2239	Acts as a magnesium transporter
DJ40_3738	COG0248	Ppx GppA phosphatase
DJ40_3739	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DJ40_3741	COG0581	inorganic phosphate transmembrane transporter activity
DJ40_3744	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJ40_3745	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DJ40_3748	COG2233	PERMEase
DJ40_3750	COG1393	Belongs to the ArsC family
DJ40_3751	COG4783	chaperone-mediated protein folding
DJ40_3752	COG0628	permease
DJ40_3755	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DJ40_3756	COG2716	regulation of RNA biosynthetic process
DJ40_3758	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
DJ40_376	COG0672	)-iron permease
DJ40_3761	COG2321	neutral zinc metallopeptidase
DJ40_3765	COG1876	peptidase activity
DJ40_3767	COG1393	Belongs to the ArsC family
DJ40_3769	COG1840	ABC-type Fe3 transport system, periplasmic component
DJ40_3770	COG1175	transmembrane transport
DJ40_3771	COG3842	ATPase activity
DJ40_3772	COG3119	arylsulfatase activity
DJ40_3773	COG0641	radical SAM
DJ40_3774	COG1988	membrane-bound metal-dependent
DJ40_3776	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ40_3778	COG2197	response regulator
DJ40_3779	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ40_3779	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ40_378	COG2066	Belongs to the glutaminase family
DJ40_3780	COG3062	negative regulation of establishment of protein localization
DJ40_3782	COG3043	anaerobic respiration
DJ40_3783	COG3005	denitrification pathway
DJ40_379	COG1349	DNA-binding transcription factor activity
DJ40_3791	COG3111	PFAM Bacterial OB fold (BOF) protein
DJ40_3793	COG2837	iron assimilation
DJ40_3794	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJ40_3796	COG4886	Leucine-rich repeat (LRR) protein
DJ40_3798	COG2731	YhcH YjgK YiaL family protein
DJ40_3799	COG1737	Transcriptional regulator
DJ40_38	COG1983	PspC domain protein
DJ40_3801	COG4150	thiosulfate binding
DJ40_3802	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DJ40_3803	COG4208	sulfate ABC transporter
DJ40_3806	COG0745	RESPONSE REGULATOR receiver
DJ40_3807	COG5002	protein histidine kinase activity
DJ40_3807	COG3850	Histidine kinase
DJ40_3809	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DJ40_381	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ40_3810	COG0006	proline dipeptidase activity
DJ40_3812	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ40_3815	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ40_3816	COG0745	RESPONSE REGULATOR receiver
DJ40_3817	COG2205	protein histidine kinase activity
DJ40_3818	COG2190	(PTS) system
DJ40_382	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJ40_3820	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ40_3821	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DJ40_3822	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
DJ40_3825	COG3530	Putative quorum-sensing-regulated virulence factor
DJ40_3836	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DJ40_3839	COG0667	Aldo Keto reductase
DJ40_3844	COG0436	Aminotransferase
DJ40_3845	COG3038	cytochrome b561
DJ40_3851	COG3381	protein complex oligomerization
DJ40_3852	COG3302	dmso reductase anchor subunit
DJ40_3853	COG0437	4 iron, 4 sulfur cluster binding
DJ40_3854	COG0243	molybdopterin cofactor binding
DJ40_3862	COG2951	lytic endotransglycosylase activity
DJ40_3874	COG3121	Chaperone
DJ40_3875	COG3188	usher protein
DJ40_3884	COG3501	Rhs element vgr protein
DJ40_3890	COG2824	Alkylphosphonate utilization operon protein PhnA
DJ40_3892	COG1704	LemA family
DJ40_3896	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DJ40_3897	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DJ40_3898	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DJ40_390	COG2030	dehydratase
DJ40_3900	COG1138	Cytochrome C-type biogenesis protein
DJ40_3901	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJ40_3902	COG4235	cytochrome complex assembly
DJ40_3902	COG3088	subunit of a heme lyase
DJ40_3903	COG3088	subunit of a heme lyase
DJ40_3903	COG4235	cytochrome complex assembly
DJ40_3906	COG3691	Protein conserved in bacteria
DJ40_3909	COG2062	phosphohistidine phosphatase, SixA
DJ40_391	COG0427	acetyl-CoA hydrolase
DJ40_3911	COG2890	protein-(glutamine-N5) methyltransferase activity
DJ40_3914	COG0730	response to heat
DJ40_3915	COG3101	peptidyl-lysine hydroxylation
DJ40_3918	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ40_3919	COG1794	racemase activity, acting on amino acids and derivatives
DJ40_3922	COG0697	spore germination
DJ40_3925	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DJ40_3927	COG0586	Pfam SNARE associated Golgi protein
DJ40_3929	COG0285	dihydrofolate synthase activity
DJ40_3930	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
DJ40_3931	COG1286	toxin biosynthetic process
DJ40_3932	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DJ40_3933	COG0163	prenyltransferase activity
DJ40_3934	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ40_3935	COG4215	(ABC) transporter
DJ40_3936	COG4160	amino acid transport
DJ40_3937	COG4598	ABC transporter
DJ40_3938	COG1090	epimerase
DJ40_394	COG2205	protein histidine kinase activity
DJ40_394	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ40_3940	COG0622	Phosphoesterase
DJ40_3941	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
DJ40_3942	COG3037	sugar-specific permease SgaT UlaA
DJ40_3945	COG1609	Transcriptional regulator
DJ40_3946	COG0857	belongs to the CobB CobQ family
DJ40_3946	COG0280	phosphate acetyltransferase
DJ40_3950	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ40_3951	COG0490	domain, Protein
DJ40_3951	COG0471	metal ion transport
DJ40_3954	COG0436	Aminotransferase
DJ40_3955	COG0583	DNA-binding transcription factor activity
DJ40_3957	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ40_3959	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
DJ40_3961	COG1034	ATP synthesis coupled electron transport
DJ40_3964	COG0839	Belongs to the complex I subunit 6 family
DJ40_3966	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DJ40_3967	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ40_397	COG3188	usher protein
DJ40_3970	COG2731	YhcH YjgK YiaL family protein
DJ40_3971	COG3265	gluconokinase activity
DJ40_3972	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_3974	COG1609	Transcriptional regulator
DJ40_3975	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ40_3978	COG0129	dihydroxy-acid dehydratase activity
DJ40_3980	COG4575	ribosome binding
DJ40_3982	COG1169	isochorismate synthase
DJ40_3985	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
DJ40_3988	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DJ40_399	COG3121	Chaperone
DJ40_3992	COG1126	abc transporter atp-binding protein
DJ40_3993	COG0765	amino acid transport
DJ40_3994	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ40_40	COG3106	COG3106 Predicted ATPase
DJ40_4000	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJ40_4004	COG1063	alcohol dehydrogenase
DJ40_4005	COG1879	ABC-type sugar transport system periplasmic component
DJ40_4006	COG1129	ABC transporter
DJ40_4007	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_4008	COG1609	Transcriptional regulator
DJ40_4009	COG0583	DNA-binding transcription factor activity
DJ40_4010	COG0473	3-isopropylmalate dehydrogenase activity
DJ40_4011	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DJ40_4012	COG4638	Rieske (2fe-2S)
DJ40_4013	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ40_4014	COG2831	hemolysin activation secretion protein
DJ40_4019	COG3210	domain, Protein
DJ40_402	COG0395	ABC-type sugar transport system, permease component
DJ40_4021	COG3842	ATPase activity
DJ40_4023	COG1609	Transcriptional regulator
DJ40_4026	COG0395	ABC-type sugar transport system, permease component
DJ40_4027	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
DJ40_403	COG1175	transmembrane transport
DJ40_4031	COG0668	transmembrane transport
DJ40_4032	COG1518	maintenance of DNA repeat elements
DJ40_4033	COG1203	CRISPR-associated helicase, Cas3
DJ40_4038	COG0667	Aldo Keto reductase
DJ40_4040	COG0477	Major facilitator Superfamily
DJ40_4042	COG0583	DNA-binding transcription factor activity
DJ40_4043	COG3916	Acyl-homoserine-lactone synthase
DJ40_4044	COG2771	luxR family
DJ40_405	COG0673	inositol 2-dehydrogenase activity
DJ40_4050	COG2943	transferase activity, transferring hexosyl groups
DJ40_4051	COG5645	(Lipo)protein
DJ40_4052	COG3104	oligopeptide transport
DJ40_4053	COG1560	Kdo2-lipid A biosynthetic process
DJ40_4056	COG0628	permease
DJ40_4062	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
DJ40_4063	COG1530	ribonuclease E activity
DJ40_4064	COG0564	pseudouridine synthase activity
DJ40_4066	COG1399	metal-binding, possibly nucleic acid-binding protein
DJ40_4067	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DJ40_4071	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_4073	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ40_4074	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DJ40_4075	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DJ40_4077	COG0470	DNA polymerase III
DJ40_4078	COG0084	hydrolase, TatD family'
DJ40_4079	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJ40_4079	COG1263	PTS System
DJ40_4080	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DJ40_4081	COG0537	adenosine 5'-monophosphoramidase activity
DJ40_4082	COG5633	Lipoprotein
DJ40_4087	COG1252	NADH dehydrogenase
DJ40_4090	COG3134	Outer membrane lipoprotein
DJ40_4091	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DJ40_4092	COG4591	ABC-type transport system involved in lipoprotein release permease component
DJ40_4094	COG4591	ABC-type transport system involved in lipoprotein release permease component
DJ40_4096	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DJ40_4098	COG2850	peptidyl-arginine hydroxylation
DJ40_4100	COG0745	RESPONSE REGULATOR receiver
DJ40_4102	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DJ40_4106	COG1187	pseudouridine synthase activity
DJ40_4107	COG0538	isocitrate dehydrogenase activity
DJ40_4108	COG0582	viral genome integration into host DNA
DJ40_4120	COG2815	serine threonine protein kinase
DJ40_4120	COG0515	serine threonine protein kinase
DJ40_4129	COG1724	mRNA binding
DJ40_4130	COG1598	PFAM Uncharacterised protein family UPF0150
DJ40_4138	COG0538	isocitrate dehydrogenase activity
DJ40_414	COG3328	transposase activity
DJ40_4141	COG0840	transmembrane signaling receptor activity
DJ40_4142	COG0702	epimerase
DJ40_4143	COG1733	regulation of RNA biosynthetic process
DJ40_4148	COG1522	sequence-specific DNA binding
DJ40_415	COG3328	transposase activity
DJ40_4150	COG0604	alcohol dehydrogenase
DJ40_4150	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_4150	COG3321	synthase
DJ40_4152	COG1278	Cold shock
DJ40_4154	COG0840	transmembrane signaling receptor activity
DJ40_4155	COG1285	pathogenesis
DJ40_4160	COG1360	Flagellar Motor Protein
DJ40_4161	COG0643	Histidine kinase
DJ40_4161	COG2198	Histidine kinase
DJ40_4162	COG0835	chemotaxis
DJ40_4165	COG0840	transmembrane signaling receptor activity
DJ40_4166	COG0840	transmembrane signaling receptor activity
DJ40_4167	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DJ40_4169	COG0745	RESPONSE REGULATOR receiver
DJ40_4170	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
DJ40_4171	COG3023	N-Acetylmuramoyl-L-alanine amidase
DJ40_4172	COG5295	Hep Hag repeat protein
DJ40_4173	COG5295	Hep Hag repeat protein
DJ40_4176	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DJ40_4186	COG3121	Chaperone
DJ40_4190	COG3008	intermembrane lipid transfer
DJ40_4191	COG2995	paraquat-inducible protein a
DJ40_4192	COG1956	GAF domain-containing protein
DJ40_4194	COG0793	Belongs to the peptidase S41A family
DJ40_4195	COG1943	Transposase
DJ40_4196	COG1943	Transposase
DJ40_4199	COG3539	Fimbrial protein
DJ40_4200	COG3121	Chaperone
DJ40_4203	COG3121	Chaperone
DJ40_4204	COG2814	Major facilitator Superfamily
DJ40_4205	COG0823	Involved in the tonB-independent uptake of proteins
DJ40_4207	COG3023	N-Acetylmuramoyl-L-alanine amidase
DJ40_4209	COG1988	membrane-bound metal-dependent
DJ40_4210	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DJ40_4211	COG1653	transport
DJ40_4212	COG3842	ATPase activity
DJ40_4213	COG0395	ABC-type sugar transport system, permease component
DJ40_4214	COG1175	transmembrane transport
DJ40_4216	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_4218	COG1917	Cupin 2, conserved barrel domain protein
DJ40_4219	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ40_4222	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJ40_4223	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJ40_4224	COG1121	(ABC) transporter
DJ40_4225	COG0803	Belongs to the bacterial solute-binding protein 9 family
DJ40_4238	COG5280	Phage tail tape measure protein TP901
DJ40_4238	COG3953	SLT domain
DJ40_4243	COG4249	Peptidase C14 caspase catalytic subunit p20
DJ40_4250	COG0776	regulation of translation
DJ40_4253	COG0386	Belongs to the glutathione peroxidase family
DJ40_4254	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
DJ40_4262	COG0791	NLP P60 protein
DJ40_4267	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DJ40_4267	COG0574	Belongs to the PEP-utilizing enzyme family
DJ40_4268	COG0628	permease
DJ40_4269	COG0247	lactate metabolic process
DJ40_4269	COG0277	FAD linked oxidase domain protein
DJ40_4270	COG2050	protein possibly involved in aromatic compounds catabolism
DJ40_4271	COG0316	Belongs to the HesB IscA family
DJ40_4272	COG0719	Fe-S assembly protein
DJ40_4273	COG0396	ATPase activity
DJ40_4274	COG0719	Fe-S assembly protein
DJ40_4277	COG1388	LysM domain
DJ40_4277	COG1376	ErfK ybiS ycfS ynhG family protein
DJ40_4278	COG4238	major outer membrane lipoprotein
DJ40_4285	COG0307	riboflavin synthase, alpha
DJ40_4288	COG2814	Major facilitator Superfamily
DJ40_431	COG4974	Belongs to the 'phage' integrase family
DJ40_443	COG5002	protein histidine kinase activity
DJ40_443	COG2176	DNA-directed DNA polymerase activity
DJ40_45	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
DJ40_450	COG4695	Portal protein
DJ40_46	COG4948	Mandelate Racemase Muconate Lactonizing
DJ40_47	COG2866	Carboxypeptidase
DJ40_48	COG4166	transmembrane transport
DJ40_486	COG3136	membrane protein required for alginate biosynthesis
DJ40_490	COG1113	amino acid transport
DJ40_499	COG0506	proline dehydrogenase activity
DJ40_499	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DJ40_499	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DJ40_5	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DJ40_507	COG1191	sigma factor activity
DJ40_513	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
DJ40_514	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
DJ40_517	COG1677	Flagellar hook-basal body complex protein FliE
DJ40_519	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DJ40_52	COG0657	acetylesterase activity
DJ40_52	COG2755	lipolytic protein G-D-S-L family
DJ40_521	COG1157	protein secretion by the type III secretion system
DJ40_522	COG2882	bacterial-type flagellum organization
DJ40_524	COG1580	Controls the rotational direction of flagella during chemotaxis
DJ40_529	COG1987	bacterial-type flagellum assembly
DJ40_533	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ40_534	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_535	COG1129	ABC transporter
DJ40_537	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_538	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_538	COG3347	Dehydrogenase
DJ40_539	COG2390	Transcriptional regulator
DJ40_541	COG1256	bacterial-type flagellum assembly
DJ40_545	COG4786	Flagellar basal body rod
DJ40_547	COG1749	Flagellar hook protein flgE
DJ40_548	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DJ40_549	COG1558	bacterial-type flagellum-dependent cell motility
DJ40_55	COG0674	pyruvate-flavodoxin oxidoreductase activity
DJ40_55	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ40_55	COG1013	pyruvate-flavodoxin oxidoreductase activity
DJ40_55	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DJ40_550	COG1815	bacterial-type flagellum-dependent cell motility
DJ40_552	COG2747	anti-sigma28 factor FlgM
DJ40_553	COG3418	PFAM FlgN family protein
DJ40_556	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DJ40_557	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DJ40_562	COG2372	response to copper ion
DJ40_563	COG1528	Iron-storage protein
DJ40_567	COG1770	oligopeptidase
DJ40_57	COG1285	pathogenesis
DJ40_570	COG3141	response to X-ray
DJ40_571	COG0513	Belongs to the DEAD box helicase family
DJ40_576	COG1760	l-serine dehydratase
DJ40_577	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJ40_578	COG2368	4-hydroxyphenylacetate
DJ40_58	COG3042	response to heat
DJ40_581	COG3971	2-oxopent-4-enoate hydratase activity
DJ40_583	COG3384	dioxygenase
DJ40_584	COG1012	belongs to the aldehyde dehydrogenase family
DJ40_587	COG1846	Transcriptional regulator
DJ40_588	COG1253	flavin adenine dinucleotide binding
DJ40_589	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ40_589	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJ40_59	COG3187	Heat shock protein
DJ40_590	COG3715	PTS system
DJ40_591	COG3716	PTS system mannose fructose sorbose family IID component
DJ40_595	COG3447	MASE1 domain protein
DJ40_595	COG5001	Diguanylate cyclase
DJ40_595	COG5002	protein histidine kinase activity
DJ40_597	COG2226	methyltransferase
DJ40_599	COG1278	Cold shock
DJ40_6	COG0791	NLP P60 protein
DJ40_60	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ40_602	COG1113	amino acid transport
DJ40_609	COG2207	Transcriptional regulator
DJ40_61	COG2911	Protein conserved in bacteria
DJ40_611	COG1132	(ABC) transporter
DJ40_617	COG2223	nitrite transmembrane transporter activity
DJ40_622	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DJ40_627	COG3122	Protein conserved in bacteria
DJ40_63	COG3784	Protein of unknown function (DUF1318)
DJ40_631	COG0534	Mate efflux family protein
DJ40_635	COG4948	Mandelate Racemase Muconate Lactonizing
DJ40_637	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_638	COG3011	Protein conserved in bacteria
DJ40_639	COG2271	Major facilitator Superfamily
DJ40_64	COG0246	Mannitol dehydrogenase
DJ40_640	COG1470	cell adhesion involved in biofilm formation
DJ40_640	COG1388	LysM domain
DJ40_643	COG2925	Exonuclease
DJ40_644	COG0531	amino acid
DJ40_646	COG0371	Dehydrogenase
DJ40_647	COG1129	ABC transporter
DJ40_648	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_65	COG2390	Transcriptional regulator
DJ40_650	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ40_652	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DJ40_655	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DJ40_658	COG0140	phosphoribosyl-ATP diphosphatase activity
DJ40_658	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DJ40_660	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DJ40_661	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DJ40_664	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DJ40_665	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ40_666	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ40_667	COG1120	ATPase activity
DJ40_67	COG1643	Atp-dependent helicase
DJ40_670	COG3486	L-lysine 6-monooxygenase (NADPH) activity
DJ40_671	COG0076	glutamate decarboxylase activity
DJ40_672	COG4114	ferric iron reductase
DJ40_673	COG1253	flavin adenine dinucleotide binding
DJ40_674	COG2982	Protein involved in outer membrane biogenesis
DJ40_677	COG0489	protein tyrosine kinase activity
DJ40_682	COG2814	Major facilitator Superfamily
DJ40_684	COG1346	cytolysis
DJ40_687	COG2949	membrane
DJ40_688	COG4211	Belongs to the binding-protein-dependent transport system permease family
DJ40_691	COG2311	Membrane
DJ40_693	COG0477	Major facilitator Superfamily
DJ40_694	COG0583	DNA-binding transcription factor activity
DJ40_70	COG3591	Belongs to the peptidase S1B family
DJ40_700	COG1136	(ABC) transporter
DJ40_702	COG0303	'Molybdopterin
DJ40_705	COG0488	(ABC) transporter
DJ40_72	COG3038	cytochrome b561
DJ40_740	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DJ40_741	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ40_743	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_744	COG1024	Enoyl-CoA hydratase
DJ40_746	COG3425	synthase
DJ40_747	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_748	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ40_749	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DJ40_75	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
DJ40_751	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_759	COG2920	part of a sulfur-relay system
DJ40_76	COG2205	protein histidine kinase activity
DJ40_763	COG1832	CoA-binding protein
DJ40_764	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
DJ40_766	COG0210	DNA helicase
DJ40_767	COG3304	Inner membrane component domain
DJ40_768	COG1289	transmembrane transporter activity
DJ40_769	COG3070	regulator of competence-specific genes
DJ40_77	COG0745	RESPONSE REGULATOR receiver
DJ40_771	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJ40_771	COG2885	chlorophyll binding
DJ40_773	COG1067	ATP-dependent peptidase activity
DJ40_776	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ40_777	COG3009	Protein conserved in bacteria
DJ40_778	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DJ40_778	COG3008	intermembrane lipid transfer
DJ40_779	COG2995	paraquat-inducible protein a
DJ40_780	COG0488	(ABC) transporter
DJ40_782	COG3217	Mosc domain protein beta barrel domain protein
DJ40_782	COG0633	Ferredoxin
DJ40_785	COG0308	aminopeptidase N
DJ40_789	COG1943	Transposase
DJ40_79	COG0531	amino acid
DJ40_790	COG1943	Transposase
DJ40_791	COG1448	Aminotransferase
DJ40_792	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ40_793	COG3108	Peptidase M15
DJ40_794	COG2989	Protein conserved in bacteria
DJ40_796	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
DJ40_797	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
DJ40_798	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DJ40_799	COG3173	Aminoglycoside phosphotransferase
DJ40_8	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DJ40_801	COG2835	tetraacyldisaccharide 4'-kinase activity
DJ40_802	COG1278	Cold shock
DJ40_807	COG0658	competence protein
DJ40_807	COG2333	competence protein COMEC
DJ40_81	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DJ40_810	COG0539	negative regulation of cytoplasmic translation
DJ40_816	COG0252	asparaginase activity
DJ40_817	COG1944	ATP diphosphatase activity
DJ40_818	COG2116	formate transmembrane transporter activity
DJ40_819	COG1882	Formate acetyltransferase
DJ40_82	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
DJ40_821	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DJ40_822	COG2814	Major facilitator Superfamily
DJ40_824	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DJ40_827	COG1674	ftsk spoiiie
DJ40_827	COG3107	peptidoglycan biosynthetic process
DJ40_829	COG0492	ferredoxin-NADP+ reductase activity
DJ40_83	COG0589	response to stress
DJ40_831	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
DJ40_833	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DJ40_834	COG0542	response to heat
DJ40_836	COG1278	Cold shock
DJ40_838	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ40_839	COG2990	Protein conserved in bacteria
DJ40_84	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DJ40_840	COG3593	DNA synthesis involved in DNA repair
DJ40_841	COG2431	L-lysine efflux transmembrane transporter activity
DJ40_843	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ40_844	COG0028	Belongs to the TPP enzyme family
DJ40_845	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
DJ40_846	COG0702	epimerase
DJ40_847	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ40_849	COG1605	Chorismate mutase
DJ40_85	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJ40_850	COG1126	abc transporter atp-binding protein
DJ40_851	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ40_852	COG4215	(ABC) transporter
DJ40_853	COG4160	amino acid transport
DJ40_857	COG1120	ATPase activity
DJ40_858	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ40_861	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ40_864	COG1177	transmembrane transport
DJ40_865	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ40_866	COG3842	ATPase activity
DJ40_867	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
DJ40_870	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DJ40_871	COG2985	domain, Protein
DJ40_871	COG0569	domain protein
DJ40_873	COG0671	phosphoesterase, PA-phosphatase related
DJ40_874	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DJ40_875	COG1349	DNA-binding transcription factor activity
DJ40_876	COG0814	amino acid
DJ40_877	COG1686	Belongs to the peptidase S11 family
DJ40_878	COG2011	ABC-type metal ion transport system permease component
DJ40_88	COG1011	Hydrolase
DJ40_883	COG0625	glutathione transferase activity
DJ40_884	COG4771	TonB-dependent receptor
DJ40_886	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ40_888	COG0833	amino acid
DJ40_89	COG0440	acetolactate synthase activity
DJ40_890	COG0583	DNA-binding transcription factor activity
DJ40_891	COG2855	membrane
DJ40_893	COG3188	usher protein
DJ40_894	COG3121	Chaperone
DJ40_897	COG3710	Transcriptional regulator
DJ40_898	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
DJ40_898	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJ40_898	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJ40_899	COG1105	Belongs to the carbohydrate kinase PfkB family
DJ40_90	COG0028	Belongs to the TPP enzyme family
DJ40_901	COG0494	nUDIX hydrolase
DJ40_902	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ40_903	COG1129	ABC transporter
DJ40_905	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DJ40_910	COG1028	Short-chain dehydrogenase reductase Sdr
DJ40_914	COG1312	Catalyzes the dehydration of D-mannonate
DJ40_915	COG0246	Mannitol dehydrogenase
DJ40_916	COG2186	Transcriptional regulator
DJ40_918	COG0523	cobalamin synthesis protein
DJ40_919	COG0671	phosphoesterase, PA-phosphatase related
DJ40_920	COG0791	NLP P60 protein
DJ40_921	COG2200	EAL domain
DJ40_922	COG4166	transmembrane transport
DJ40_923	COG4174	ABC transporter (Permease)
DJ40_924	COG4239	(ABC) transporter, permease
DJ40_925	COG4172	Belongs to the ABC transporter superfamily
DJ40_927	COG2814	Major facilitator Superfamily
DJ40_928	COG1187	pseudouridine synthase activity
DJ40_929	COG1061	Type III restriction enzyme res subunit
DJ40_931	COG1943	Transposase
DJ40_933	COG3082	Protein of unknown function (DUF1414)
DJ40_934	COG3083	sulfuric ester hydrolase activity
DJ40_938	COG3157	Type VI secretion system effector, Hcp
DJ40_943	COG2723	6-phospho-beta-galactosidase activity
DJ40_945	COG1737	Transcriptional regulator
DJ40_948	COG3299	homolog of phage Mu protein gp47
DJ40_95	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DJ40_957	COG4386	tail sheath protein
DJ40_961	COG3622	Belongs to the hyi family
DJ40_962	COG1349	DNA-binding transcription factor activity
DJ40_963	COG0235	Class ii aldolase
DJ40_964	COG3395	kinase activity
DJ40_97	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJ40_972	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJ40_977	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
DJ40_979	COG2223	nitrite transmembrane transporter activity
DJ40_98	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DJ40_980	COG2198	Histidine kinase
DJ40_980	COG0642	Histidine kinase
DJ40_982	COG2205	protein histidine kinase activity
DJ40_982	COG0784	Response regulator, receiver
DJ40_987	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ40_990	COG0814	amino acid
DJ40_995	COG0697	spore germination
DJ40_997	COG1982	Orn Lys Arg decarboxylase major
DJ40_998	COG0531	amino acid
DJ40_999	COG1174	glycine betaine transport