DJ40_100 SM00382 ATPases associated with a variety of cellular activities DJ40_1000 SM00382 ATPases associated with a variety of cellular activities DJ40_1003 SM00450 Rhodanese Homology Domain DJ40_1006 SM00382 ATPases associated with a variety of cellular activities DJ40_1015 SM00382 ATPases associated with a variety of cellular activities DJ40_1018 SM00507 HNH nucleases DJ40_1019 SM01118 DJ40_1019 DJ40_1027 SM00487 DEAD-like helicases superfamily DJ40_1027 SM00490 helicase superfamily c-terminal domain DJ40_1030 SM00382 ATPases associated with a variety of cellular activities DJ40_1036 SM00382 ATPases associated with a variety of cellular activities DJ40_1036 SM00448 cheY-homologous receiver domain DJ40_1037 SM00091 PAS domain DJ40_1037 SM00387 Histidine kinase-like ATPases DJ40_1037 SM00388 His Kinase A (phosphoacceptor) domain DJ40_104 SM00354 helix_turn _helix lactose operon repressor DJ40_1051 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_1055 SM00487 DEAD-like helicases superfamily DJ40_1055 SM00490 helicase superfamily c-terminal domain DJ40_1056 SM00382 ATPases associated with a variety of cellular activities DJ40_1060 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_1060 SM00876 Biotin and Thiamin Synthesis associated domain DJ40_1064 SM00382 ATPases associated with a variety of cellular activities DJ40_1069 SM00382 ATPases associated with a variety of cellular activities DJ40_1077 SM00855 Phosphoglycerate mutase family DJ40_1097 SM00881 CoA binding domain DJ40_1100 SM00861 Transketolase, pyrimidine binding domain DJ40_111 SM00382 ATPases associated with a variety of cellular activities DJ40_1143 SM01081 Putative carbohydrate binding domain DJ40_1146 SM01321 DJ40_1146 DJ40_1160 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_1163 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ40_1163 SM01091 Transporter associated domain DJ40_1165 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_1168 SM00382 ATPases associated with a variety of cellular activities DJ40_1179 SM00936 Penicillin-binding protein 5, C-terminal domain DJ40_1182 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_1185 SM00357 Cold shock protein domain DJ40_1187 SM00421 helix_turn_helix, Lux Regulon DJ40_1191 SM00382 ATPases associated with a variety of cellular activities DJ40_1198 SM00382 ATPases associated with a variety of cellular activities DJ40_1205 SM01359 DJ40_1205 DJ40_1205 SM01360 DJ40_1205 DJ40_1214 SM00869 Autotransporter beta-domain DJ40_1216 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. DJ40_1217 SM00363 S4 RNA-binding domain DJ40_1220 SM01217 DJ40_1220 DJ40_1227 SM00195 Dual specificity phosphatase, catalytic domain DJ40_1227 SM00404 Protein tyrosine phosphatase, catalytic domain motif DJ40_1229 SM00563 Phosphate acyltransferases DJ40_1251 SM00255 Toll - interleukin 1 - resistance DJ40_1253 SM00530 Helix-turn-helix XRE-family like proteins DJ40_1256 SM00974 DJ40_1256 DJ40_1257 SM00487 DEAD-like helicases superfamily DJ40_1263 SM00840 DJ40_1263 DJ40_1266 SM01001 AIR carboxylase DJ40_1269 SM00382 ATPases associated with a variety of cellular activities DJ40_127 SM00342 helix_turn_helix, arabinose operon control protein DJ40_1271 SM00822 DJ40_1271 DJ40_1273 SM00244 prohibitin homologues DJ40_1275 SM00422 helix_turn_helix, mercury resistance DJ40_129 SM00382 ATPases associated with a variety of cellular activities DJ40_1319 SM01040 BRO family, N-terminal domain DJ40_1320 SM01040 BRO family, N-terminal domain DJ40_133 SM00382 ATPases associated with a variety of cellular activities DJ40_135 SM00382 ATPases associated with a variety of cellular activities DJ40_1364 SM00387 Histidine kinase-like ATPases DJ40_1365 SM00493 DJ40_1365 DJ40_1367 SM00382 ATPases associated with a variety of cellular activities DJ40_1385 SM00938 Nitrogen regulatory protein P-II DJ40_1386 SM00382 ATPases associated with a variety of cellular activities DJ40_1387 SM00382 ATPases associated with a variety of cellular activities DJ40_1388 SM00344 helix_turn_helix ASNC type DJ40_1396 SM00411 bacterial (prokaryotic) histone like domain DJ40_1397 SM00382 ATPases associated with a variety of cellular activities DJ40_1397 SM00464 Found in ATP-dependent protease La (LON) DJ40_1398 SM00382 ATPases associated with a variety of cellular activities DJ40_1398 SM00994 ClpX C4-type zinc finger DJ40_1398 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_140 SM00342 helix_turn_helix, arabinose operon control protein DJ40_1415 SM00981 DJ40_1415 DJ40_1418 SM00861 Transketolase, pyrimidine binding domain DJ40_142 SM00900 DJ40_142 DJ40_1426 SM01321 DJ40_1426 DJ40_1429 SM01323 DJ40_1429 DJ40_1436 SM00642 Alpha-amylase domain DJ40_144 SM00478 endonuclease III DJ40_144 SM00525 DJ40_144 DJ40_1440 SM00091 PAS domain DJ40_1440 SM00387 Histidine kinase-like ATPases DJ40_1440 SM00388 His Kinase A (phosphoacceptor) domain DJ40_1441 SM00448 cheY-homologous receiver domain DJ40_1441 SM00862 Transcriptional regulatory protein, C terminal DJ40_1453 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DJ40_1458 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins DJ40_1459 SM01321 DJ40_1459 DJ40_1469 SM00900 DJ40_1469 DJ40_147 SM00357 Cold shock protein domain DJ40_147 SM00955 DJ40_147 DJ40_1478 SM00710 Parallel beta-helix repeats DJ40_1478 SM00912 haemagglutination activity domain DJ40_1484 SM01007 Class II Aldolase and Adducin N-terminal domain DJ40_1496 SM00382 ATPases associated with a variety of cellular activities DJ40_1499 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_1507 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ40_1510 SM00967 RNA 2'-O ribose methyltransferase substrate binding DJ40_1512 SM01144 DJ40_1512 DJ40_1513 SM00881 CoA binding domain DJ40_1514 SM00155 Phospholipase D. Active site motifs. DJ40_152 SM01007 Class II Aldolase and Adducin N-terminal domain DJ40_1520 SM00382 ATPases associated with a variety of cellular activities DJ40_1520 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_1522 SM00363 S4 RNA-binding domain DJ40_1525 SM00830 Chorismate mutase type II DJ40_1526 SM00830 Chorismate mutase type II DJ40_1528 SM00448 cheY-homologous receiver domain DJ40_1528 SM00850 LytTr DNA-binding domain DJ40_1535 SM00382 ATPases associated with a variety of cellular activities DJ40_1535 SM00962 SRP54-type protein, GTPase domain DJ40_1535 SM00963 SRP54-type protein, helical bundle domain DJ40_1537 SM01091 Transporter associated domain DJ40_1548 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DJ40_155 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DJ40_1550 SM00382 ATPases associated with a variety of cellular activities DJ40_1556 SM00861 Transketolase, pyrimidine binding domain DJ40_1559 SM00382 ATPases associated with a variety of cellular activities DJ40_1568 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ40_1569 SM01007 Class II Aldolase and Adducin N-terminal domain DJ40_157 SM00028 Tetratricopeptide repeats DJ40_1570 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ40_1570 SM01134 DJ40_1570 DJ40_1572 SM00382 ATPases associated with a variety of cellular activities DJ40_1583 SM01235 DJ40_1583 DJ40_1584 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_1587 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DJ40_159 SM00014 Acid phosphatase homologues DJ40_1590 SM01120 DJ40_1590 DJ40_1593 SM00829 Enoylreductase DJ40_1595 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DJ40_1595 SM00534 ATPase domain of DNA mismatch repair MUTS family DJ40_1597 SM00257 Lysin motif DJ40_1611 SM01321 DJ40_1611 DJ40_1618 SM01192 DJ40_1618 DJ40_1618 SM01193 DJ40_1618 DJ40_1621 SM00954 Region found in RelA / SpoT proteins DJ40_1622 SM00073 Histidine Phosphotransfer domain DJ40_1622 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_1622 SM00387 Histidine kinase-like ATPases DJ40_1622 SM00388 His Kinase A (phosphoacceptor) domain DJ40_1622 SM00448 cheY-homologous receiver domain DJ40_1623 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ40_1624 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ40_1633 SM00382 ATPases associated with a variety of cellular activities DJ40_1635 SM00487 DEAD-like helicases superfamily DJ40_1635 SM00490 helicase superfamily c-terminal domain DJ40_1635 SM00847 Helicase associated domain (HA2) Add an annotation DJ40_164 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DJ40_164 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DJ40_164 SM00493 DJ40_164 DJ40_1647 SM00382 ATPases associated with a variety of cellular activities DJ40_1648 SM00947 Carbonic anhydrase DJ40_1660 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_1660 SM00895 DJ40_1660 DJ40_1663 SM00644 DJ40_1663 DJ40_1668 SM01240 DJ40_1668 DJ40_1673 SM00957 SecA DEAD-like domain DJ40_1673 SM00958 SecA preprotein cross-linking domain DJ40_1677 SM00864 Tubulin/FtsZ family, GTPase domain DJ40_1677 SM00865 Tubulin/FtsZ family, C-terminal domain DJ40_1678 SM00842 Cell division protein FtsA DJ40_168 SM00822 DJ40_168 DJ40_1693 SM00354 helix_turn _helix lactose operon repressor DJ40_1699 SM00917 LeuA allosteric (dimerisation) domain DJ40_17 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ40_170 SM00363 S4 RNA-binding domain DJ40_1700 SM01329 DJ40_1700 DJ40_1708 SM00382 ATPases associated with a variety of cellular activities DJ40_1710 SM00486 DNA polymerase type-B family DJ40_1711 SM00487 DEAD-like helicases superfamily DJ40_1711 SM00490 helicase superfamily c-terminal domain DJ40_1722 SM00382 ATPases associated with a variety of cellular activities DJ40_1722 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_1732 SM00271 DnaJ molecular chaperone homology domain DJ40_1736 SM00650 Ribosomal RNA adenine dimethylases DJ40_1744 SM00851 MGS-like domain DJ40_1744 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DJ40_1745 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DJ40_1751 SM00904 Riboflavin kinase DJ40_1755 SM00271 DnaJ molecular chaperone homology domain DJ40_1762 SM00852 Probable molybdopterin binding domain DJ40_1770 SM00448 cheY-homologous receiver domain DJ40_1770 SM00862 Transcriptional regulatory protein, C terminal DJ40_1773 SM00855 Phosphoglycerate mutase family DJ40_1774 SM00342 helix_turn_helix, arabinose operon control protein DJ40_1774 SM00871 Bacterial transcription activator, effector binding domain DJ40_1778 SM00831 Cation transporter/ATPase, N-terminus DJ40_1780 SM00267 diguanylate cyclase DJ40_1782 SM00382 ATPases associated with a variety of cellular activities DJ40_1784 SM00530 Helix-turn-helix XRE-family like proteins DJ40_1785 SM00382 ATPases associated with a variety of cellular activities DJ40_179 SM00749 bacterial OsmY and nodulation domain DJ40_1790 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DJ40_1791 SM01133 DJ40_1791 DJ40_1796 SM00749 bacterial OsmY and nodulation domain DJ40_1805 SM00267 diguanylate cyclase DJ40_1815 SM00382 ATPases associated with a variety of cellular activities DJ40_1819 SM01133 DJ40_1819 DJ40_1825 SM00342 helix_turn_helix, arabinose operon control protein DJ40_1832 SM00487 DEAD-like helicases superfamily DJ40_1842 SM00778 Zinc-binding domain of primase-helicase DJ40_1866 SM00382 ATPases associated with a variety of cellular activities DJ40_1867 SM00382 ATPases associated with a variety of cellular activities DJ40_1870 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_1870 SM00866 DJ40_1870 DJ40_1875 SM00382 ATPases associated with a variety of cellular activities DJ40_1876 SM00382 ATPases associated with a variety of cellular activities DJ40_1878 SM00072 Guanylate kinase homologues. DJ40_1879 SM00849 Metallo-beta-lactamase superfamily DJ40_1880 SM00859 Semialdehyde dehydrogenase, NAD binding domain DJ40_1883 SM00382 ATPases associated with a variety of cellular activities DJ40_1900 SM00530 Helix-turn-helix XRE-family like proteins DJ40_1902 SM00487 DEAD-like helicases superfamily DJ40_1902 SM00490 helicase superfamily c-terminal domain DJ40_1903 SM00028 Tetratricopeptide repeats DJ40_1904 SM00316 Ribosomal protein S1-like RNA-binding domain DJ40_1904 SM00322 K homology RNA-binding domain DJ40_1905 SM01387 DJ40_1905 DJ40_1909 SM00316 Ribosomal protein S1-like RNA-binding domain DJ40_1909 SM00322 K homology RNA-binding domain DJ40_191 SM00155 Phospholipase D. Active site motifs. DJ40_1916 SM00382 ATPases associated with a variety of cellular activities DJ40_1918 SM01103 DJ40_1918 DJ40_1921 SM00448 cheY-homologous receiver domain DJ40_1921 SM00862 Transcriptional regulatory protein, C terminal DJ40_1922 SM00387 Histidine kinase-like ATPases DJ40_1922 SM00388 His Kinase A (phosphoacceptor) domain DJ40_1929 SM00778 Zinc-binding domain of primase-helicase DJ40_194 SM00382 ATPases associated with a variety of cellular activities DJ40_1954 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ40_1954 SM01091 Transporter associated domain DJ40_1970 SM00967 RNA 2'-O ribose methyltransferase substrate binding DJ40_1971 SM00316 Ribosomal protein S1-like RNA-binding domain DJ40_1971 SM00357 Cold shock protein domain DJ40_1971 SM00955 DJ40_1971 DJ40_1973 SM00788 Adenylosuccinate synthetase DJ40_1975 SM00244 prohibitin homologues DJ40_1976 SM00244 prohibitin homologues DJ40_1980 SM00853 MutL C terminal dimerisation domain DJ40_1980 SM01340 DJ40_1980 DJ40_1981 SM00257 Lysin motif DJ40_1981 SM00646 DJ40_1981 DJ40_1989 SM00479 DJ40_1989 DJ40_1999 SM00841 Elongation factor P, C-terminal DJ40_1999 SM01185 DJ40_1999 DJ40_2003 SM00883 Chaperonin 10 Kd subunit DJ40_2009 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ40_2014 SM01276 DJ40_2014 DJ40_2021 SM00342 helix_turn_helix, arabinose operon control protein DJ40_2026 SM01007 Class II Aldolase and Adducin N-terminal domain DJ40_203 SM00528 Domain in histone-like proteins of HNS family DJ40_2033 SM01005 Alanine racemase, C-terminal domain DJ40_2034 SM00382 ATPases associated with a variety of cellular activities DJ40_2035 SM00829 Enoylreductase DJ40_2041 SM00563 Phosphate acyltransferases DJ40_2044 SM00869 Autotransporter beta-domain DJ40_2045 SM00060 Fibronectin type 3 domain DJ40_206 SM00448 cheY-homologous receiver domain DJ40_2064 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_2072 SM00382 ATPases associated with a variety of cellular activities DJ40_2084 SM00382 ATPases associated with a variety of cellular activities DJ40_2092 SM00342 helix_turn_helix, arabinose operon control protein DJ40_2096 SM00387 Histidine kinase-like ATPases DJ40_2096 SM00388 His Kinase A (phosphoacceptor) domain DJ40_2096 SM00448 cheY-homologous receiver domain DJ40_2097 SM00421 helix_turn_helix, Lux Regulon DJ40_2097 SM00448 cheY-homologous receiver domain DJ40_2111 SM00798 AICARFT/IMPCHase bienzyme DJ40_2111 SM00851 MGS-like domain DJ40_2112 SM01209 DJ40_2112 DJ40_2112 SM01210 DJ40_2112 DJ40_2114 SM00411 bacterial (prokaryotic) histone like domain DJ40_2126 SM00876 Biotin and Thiamin Synthesis associated domain DJ40_2127 SM00663 RNA polymerase I subunit A N-terminus DJ40_2133 SM00649 Ribosomal protein L11/L12 DJ40_2134 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DJ40_2134 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DJ40_214 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DJ40_214 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DJ40_214 SM00493 DJ40_214 DJ40_2158 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DJ40_2158 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DJ40_2159 SM01004 Delta-aminolevulinic acid dehydratase DJ40_2179 SM00382 ATPases associated with a variety of cellular activities DJ40_218 SM00870 DJ40_218 DJ40_2190 SM00382 ATPases associated with a variety of cellular activities DJ40_2191 SM00382 ATPases associated with a variety of cellular activities DJ40_2198 SM00382 ATPases associated with a variety of cellular activities DJ40_2199 SM00382 ATPases associated with a variety of cellular activities DJ40_2199 SM00962 SRP54-type protein, GTPase domain DJ40_2199 SM00963 SRP54-type protein, helical bundle domain DJ40_22 SM00363 S4 RNA-binding domain DJ40_2218 SM00341 Helicase and RNase D C-terminal DJ40_2218 SM00487 DEAD-like helicases superfamily DJ40_2218 SM00490 helicase superfamily c-terminal domain DJ40_2218 SM00956 DJ40_2218 DJ40_222 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DJ40_2232 SM01219 DJ40_2232 DJ40_225 SM00763 PrkA AAA domain DJ40_2253 SM00984 UDP binding domain DJ40_2257 SM00357 Cold shock protein domain DJ40_2257 SM00382 ATPases associated with a variety of cellular activities DJ40_2257 SM00959 Rho termination factor, N-terminal domain DJ40_2259 SM00487 DEAD-like helicases superfamily DJ40_2259 SM00490 helicase superfamily c-terminal domain DJ40_2283 SM00382 ATPases associated with a variety of cellular activities DJ40_2288 SM00382 ATPases associated with a variety of cellular activities DJ40_2308 SM00382 ATPases associated with a variety of cellular activities DJ40_2314 SM00859 Semialdehyde dehydrogenase, NAD binding domain DJ40_2323 SM00487 DEAD-like helicases superfamily DJ40_2323 SM00490 helicase superfamily c-terminal domain DJ40_2325 SM00354 helix_turn _helix lactose operon repressor DJ40_2328 SM00382 ATPases associated with a variety of cellular activities DJ40_2328 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_233 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_2334 SM00382 ATPases associated with a variety of cellular activities DJ40_2353 SM00448 cheY-homologous receiver domain DJ40_2353 SM00862 Transcriptional regulatory protein, C terminal DJ40_2354 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_2354 SM00387 Histidine kinase-like ATPases DJ40_2354 SM00388 His Kinase A (phosphoacceptor) domain DJ40_2355 SM00342 helix_turn_helix, arabinose operon control protein DJ40_2357 SM00971 Serine acetyltransferase, N-terminal DJ40_236 SM01321 DJ40_236 DJ40_2361 SM00450 Rhodanese Homology Domain DJ40_2365 SM00829 Enoylreductase DJ40_2373 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain DJ40_2373 SM01232 DJ40_2373 DJ40_2384 SM00532 Ligase N family DJ40_2385 SM00072 Guanylate kinase homologues. DJ40_2386 SM01409 DJ40_2386 DJ40_2387 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ40_2387 SM00954 Region found in RelA / SpoT proteins DJ40_2389 SM00487 DEAD-like helicases superfamily DJ40_2389 SM00490 helicase superfamily c-terminal domain DJ40_2398 SM01230 DJ40_2398 DJ40_2399 SM00091 PAS domain DJ40_2399 SM00387 Histidine kinase-like ATPases DJ40_2399 SM00388 His Kinase A (phosphoacceptor) domain DJ40_2400 SM00382 ATPases associated with a variety of cellular activities DJ40_2400 SM00448 cheY-homologous receiver domain DJ40_2401 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_2404 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DJ40_2404 SM00474 3'-5' exonuclease DJ40_2404 SM00475 5'-3' exonuclease DJ40_2404 SM00482 DNA polymerase A domain DJ40_2416 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_2416 SM00895 DJ40_2416 DJ40_2422 SM00382 ATPases associated with a variety of cellular activities DJ40_2423 SM00327 von Willebrand factor (vWF) type A domain DJ40_2425 SM00344 helix_turn_helix ASNC type DJ40_2427 SM01228 DJ40_2427 DJ40_2436 SM00382 ATPases associated with a variety of cellular activities DJ40_2444 SM00382 ATPases associated with a variety of cellular activities DJ40_2447 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_2457 SM01234 DJ40_2457 DJ40_2461 SM00382 ATPases associated with a variety of cellular activities DJ40_2461 SM00760 Bacterial dnaA protein helix-turn-helix domain DJ40_2462 SM00480 DNA polymerase III beta subunit DJ40_2464 SM00387 Histidine kinase-like ATPases DJ40_2464 SM00433 TopoisomeraseII DJ40_2479 SM00642 Alpha-amylase domain DJ40_249 SM00341 Helicase and RNase D C-terminal DJ40_249 SM00474 3'-5' exonuclease DJ40_2495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ40_2495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_2495 SM01358 DJ40_2495 DJ40_2498 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ40_2517 SM00382 ATPases associated with a variety of cellular activities DJ40_2519 SM00342 helix_turn_helix, arabinose operon control protein DJ40_2527 SM00530 Helix-turn-helix XRE-family like proteins DJ40_253 SM00487 DEAD-like helicases superfamily DJ40_253 SM00491 DJ40_253 DJ40_2530 SM00382 ATPases associated with a variety of cellular activities DJ40_2544 SM00421 helix_turn_helix, Lux Regulon DJ40_2544 SM00448 cheY-homologous receiver domain DJ40_2545 SM00387 Histidine kinase-like ATPases DJ40_2549 SM00912 haemagglutination activity domain DJ40_2555 SM00382 ATPases associated with a variety of cellular activities DJ40_2556 SM00382 ATPases associated with a variety of cellular activities DJ40_2558 SM00052 Putative diguanylate phosphodiesterase DJ40_2558 SM00267 diguanylate cyclase DJ40_2566 SM00052 Putative diguanylate phosphodiesterase DJ40_2570 SM00869 Autotransporter beta-domain DJ40_2581 SM00235 Zinc-dependent metalloprotease DJ40_2582 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DJ40_2587 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_2587 SM00387 Histidine kinase-like ATPases DJ40_2587 SM00388 His Kinase A (phosphoacceptor) domain DJ40_2587 SM00448 cheY-homologous receiver domain DJ40_2588 SM00382 ATPases associated with a variety of cellular activities DJ40_2594 SM00448 cheY-homologous receiver domain DJ40_2594 SM00862 Transcriptional regulatory protein, C terminal DJ40_2596 SM00354 helix_turn _helix lactose operon repressor DJ40_2605 SM00859 Semialdehyde dehydrogenase, NAD binding domain DJ40_2606 SM00257 Lysin motif DJ40_2606 SM00634 Bacterial Ig-like domain (group 1) DJ40_2606 SM00710 Parallel beta-helix repeats DJ40_2608 SM00642 Alpha-amylase domain DJ40_2609 SM00642 Alpha-amylase domain DJ40_2616 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ40_2616 SM01134 DJ40_2616 DJ40_2618 SM00450 Rhodanese Homology Domain DJ40_2619 SM00421 helix_turn_helix, Lux Regulon DJ40_2628 SM00899 DJ40_2628 DJ40_2629 SM00316 Ribosomal protein S1-like RNA-binding domain DJ40_2629 SM00732 Likely ribonuclease with RNase H fold. DJ40_263 SM00257 Lysin motif DJ40_2631 SM00448 cheY-homologous receiver domain DJ40_2631 SM00862 Transcriptional regulatory protein, C terminal DJ40_2632 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_2632 SM00387 Histidine kinase-like ATPases DJ40_2632 SM00388 His Kinase A (phosphoacceptor) domain DJ40_2635 SM00363 S4 RNA-binding domain DJ40_265 SM00382 ATPases associated with a variety of cellular activities DJ40_2660 SM00354 helix_turn _helix lactose operon repressor DJ40_2667 SM00100 Cyclic nucleotide-monophosphate binding domain DJ40_2667 SM00419 helix_turn_helix, cAMP Regulatory protein DJ40_267 SM00382 ATPases associated with a variety of cellular activities DJ40_2674 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_2675 SM00382 ATPases associated with a variety of cellular activities DJ40_268 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DJ40_2681 SM00382 ATPases associated with a variety of cellular activities DJ40_2694 SM00838 Elongation factor G C-terminus DJ40_2694 SM00889 Elongation factor G, domain IV DJ40_2698 SM01403 DJ40_2698 DJ40_2702 SM01382 DJ40_2702 DJ40_2702 SM01383 DJ40_2702 DJ40_2705 SM00322 K homology RNA-binding domain DJ40_2709 SM01374 DJ40_2709 DJ40_2710 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DJ40_2723 SM00363 S4 RNA-binding domain DJ40_2723 SM01390 DJ40_2723 DJ40_2724 SM00662 RNA polymerases D DJ40_2726 SM00422 helix_turn_helix, mercury resistance DJ40_2753 SM00346 helix_turn_helix isocitrate lyase regulation DJ40_2754 SM01018 B12 binding domain DJ40_2763 SM00382 ATPases associated with a variety of cellular activities DJ40_2777 SM00382 ATPases associated with a variety of cellular activities DJ40_2777 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_2789 SM00530 Helix-turn-helix XRE-family like proteins DJ40_279 SM00836 DALR anticodon binding domain DJ40_279 SM01016 Arginyl tRNA synthetase N terminal dom DJ40_2803 SM00342 helix_turn_helix, arabinose operon control protein DJ40_2806 SM01133 DJ40_2806 DJ40_2808 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_2811 SM00382 ATPases associated with a variety of cellular activities DJ40_2818 SM00382 ATPases associated with a variety of cellular activities DJ40_2826 SM00357 Cold shock protein domain DJ40_2827 SM00357 Cold shock protein domain DJ40_2828 SM00357 Cold shock protein domain DJ40_2830 SM00849 Metallo-beta-lactamase superfamily DJ40_2834 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_2834 SM00895 DJ40_2834 DJ40_2842 SM00878 Biotin carboxylase C-terminal domain DJ40_2847 SM00829 Enoylreductase DJ40_2848 SM00052 Putative diguanylate phosphodiesterase DJ40_2848 SM00267 diguanylate cyclase DJ40_2853 SM00316 Ribosomal protein S1-like RNA-binding domain DJ40_2881 SM00642 Alpha-amylase domain DJ40_2883 SM00354 helix_turn _helix lactose operon repressor DJ40_2893 SM00382 ATPases associated with a variety of cellular activities DJ40_2897 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ40_2899 SM00382 ATPases associated with a variety of cellular activities DJ40_290 SM00481 DNA polymerase alpha chain like domain DJ40_2906 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ40_2907 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ40_2919 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_2921 SM00073 Histidine Phosphotransfer domain DJ40_2921 SM00091 PAS domain DJ40_2921 SM00387 Histidine kinase-like ATPases DJ40_2921 SM00388 His Kinase A (phosphoacceptor) domain DJ40_2921 SM00448 cheY-homologous receiver domain DJ40_2924 SM00749 bacterial OsmY and nodulation domain DJ40_294 SM00382 ATPases associated with a variety of cellular activities DJ40_2940 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_2940 SM00895 DJ40_2940 DJ40_2944 SM00858 DJ40_2944 DJ40_2949 SM00869 Autotransporter beta-domain DJ40_2953 SM00220 Serine/Threonine protein kinases, catalytic domain DJ40_2955 SM00327 von Willebrand factor (vWF) type A domain DJ40_2956 SM00327 von Willebrand factor (vWF) type A domain DJ40_2958 SM00327 von Willebrand factor (vWF) type A domain DJ40_2960 SM00912 haemagglutination activity domain DJ40_2972 SM00869 Autotransporter beta-domain DJ40_2975 SM00382 ATPases associated with a variety of cellular activities DJ40_2977 SM00354 helix_turn _helix lactose operon repressor DJ40_2982 SM01217 DJ40_2982 DJ40_3 SM00354 helix_turn _helix lactose operon repressor DJ40_30 SM00382 ATPases associated with a variety of cellular activities DJ40_3007 SM00400 zinc finger DJ40_3007 SM00493 DJ40_3007 DJ40_3007 SM00766 DNA primase DnaG DnaB-binding DJ40_3010 SM01207 DJ40_3010 DJ40_3011 SM00905 Dihydroneopterin aldolase DJ40_3013 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ40_3014 SM00287 Bacterial SH3 domain homologues DJ40_3015 SM01118 DJ40_3015 DJ40_3030 SM00387 Histidine kinase-like ATPases DJ40_3030 SM00433 TopoisomeraseII DJ40_3033 SM00434 DNA Topoisomerase IV DJ40_3034 SM00563 Phosphate acyltransferases DJ40_3038 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_3041 SM00342 helix_turn_helix, arabinose operon control protein DJ40_306 SM00937 DJ40_306 DJ40_3061 SM00634 Bacterial Ig-like domain (group 1) DJ40_3063 SM00060 Fibronectin type 3 domain DJ40_3065 SM00060 Fibronectin type 3 domain DJ40_3065 SM00636 DJ40_3065 DJ40_3080 SM00382 ATPases associated with a variety of cellular activities DJ40_3085 SM00382 ATPases associated with a variety of cellular activities DJ40_3089 SM00858 DJ40_3089 DJ40_31 SM00382 ATPases associated with a variety of cellular activities DJ40_310 SM01400 DJ40_310 DJ40_3114 SM00052 Putative diguanylate phosphodiesterase DJ40_3114 SM00091 PAS domain DJ40_3114 SM00267 diguanylate cyclase DJ40_3119 SM00869 Autotransporter beta-domain DJ40_3125 SM00470 ParB-like nuclease domain DJ40_3131 SM00634 Bacterial Ig-like domain (group 1) DJ40_3134 SM00470 ParB-like nuclease domain DJ40_3138 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3144 SM00823 Phosphopantetheine attachment site DJ40_3144 SM00825 Beta-ketoacyl synthase DJ40_3150 SM00382 ATPases associated with a variety of cellular activities DJ40_3151 SM00382 ATPases associated with a variety of cellular activities DJ40_3156 SM00869 Autotransporter beta-domain DJ40_3157 SM00869 Autotransporter beta-domain DJ40_3167 SM00354 helix_turn _helix lactose operon repressor DJ40_3173 SM01006 Siderophore biosynthesis protein domain DJ40_3179 SM00421 helix_turn_helix, Lux Regulon DJ40_318 SM00448 cheY-homologous receiver domain DJ40_318 SM00862 Transcriptional regulatory protein, C terminal DJ40_319 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_319 SM00387 Histidine kinase-like ATPases DJ40_319 SM00388 His Kinase A (phosphoacceptor) domain DJ40_3192 SM00382 ATPases associated with a variety of cellular activities DJ40_3192 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_3206 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3218 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3242 SM00857 Resolvase, N terminal domain DJ40_3243 SM00470 ParB-like nuclease domain DJ40_3253 SM00382 ATPases associated with a variety of cellular activities DJ40_3253 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_3280 SM00382 ATPases associated with a variety of cellular activities DJ40_3287 SM00478 endonuclease III DJ40_3287 SM00525 DJ40_3287 DJ40_3293 SM00729 Elongator protein 3, MiaB family, Radical SAM DJ40_3295 SM01152 DJ40_3295 DJ40_3299 SM00382 ATPases associated with a variety of cellular activities DJ40_330 SM00671 Sel1-like repeats. DJ40_3302 SM00732 Likely ribonuclease with RNase H fold. DJ40_3307 SM00731 SprT homologues. DJ40_3313 SM00861 Transketolase, pyrimidine binding domain DJ40_3314 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DJ40_332 SM00671 Sel1-like repeats. DJ40_3326 SM01011 Aminopeptidase P, N-terminal domain DJ40_3339 SM00448 cheY-homologous receiver domain DJ40_3339 SM00862 Transcriptional regulatory protein, C terminal DJ40_3340 SM00387 Histidine kinase-like ATPases DJ40_3340 SM00388 His Kinase A (phosphoacceptor) domain DJ40_3346 SM00937 DJ40_3346 DJ40_3352 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3354 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3355 SM00778 Zinc-binding domain of primase-helicase DJ40_3355 SM00885 D5 N terminal like DJ40_3375 SM00382 ATPases associated with a variety of cellular activities DJ40_3376 SM00382 ATPases associated with a variety of cellular activities DJ40_3384 SM00354 helix_turn _helix lactose operon repressor DJ40_3385 SM01321 DJ40_3385 DJ40_3388 SM00354 helix_turn _helix lactose operon repressor DJ40_3404 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ40_3404 SM01134 DJ40_3404 DJ40_3407 SM00869 Autotransporter beta-domain DJ40_3410 SM00947 Carbonic anhydrase DJ40_3414 SM00382 ATPases associated with a variety of cellular activities DJ40_3425 SM00862 Transcriptional regulatory protein, C terminal DJ40_3428 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ40_3428 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_3428 SM00319 Homologues of the ligand binding domain of Tar DJ40_3429 SM00849 Metallo-beta-lactamase superfamily DJ40_3433 SM00354 helix_turn _helix lactose operon repressor DJ40_3436 SM00563 Phosphate acyltransferases DJ40_3441 SM00927 DNA mismatch repair enzyme MutH DJ40_3443 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DJ40_3455 SM00646 DJ40_3455 DJ40_3459 SM00925 MltA specific insert domain DJ40_346 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_346 SM00866 DJ40_346 DJ40_3467 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DJ40_3467 SM00475 5'-3' exonuclease DJ40_3476 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ40_3485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ40_3487 SM00935 Outer membrane protein (OmpH-like) DJ40_3493 SM00481 DNA polymerase alpha chain like domain DJ40_3496 SM00977 TilS substrate C-terminal domain DJ40_35 SM00382 ATPases associated with a variety of cellular activities DJ40_3500 SM01322 DJ40_3500 DJ40_3508 SM00382 ATPases associated with a variety of cellular activities DJ40_3508 SM00930 DJ40_3508 DJ40_3519 SM00257 Lysin motif DJ40_3520 SM00849 Metallo-beta-lactamase superfamily DJ40_3523 SM00479 DJ40_3523 DJ40_3529 SM00382 ATPases associated with a variety of cellular activities DJ40_3538 SM00357 Cold shock protein domain DJ40_3542 SM00382 ATPases associated with a variety of cellular activities DJ40_3543 SM00382 ATPases associated with a variety of cellular activities DJ40_3548 SM00988 UreE urease accessory protein, N-terminal domain DJ40_3561 SM00342 helix_turn_helix, arabinose operon control protein DJ40_3569 SM00448 cheY-homologous receiver domain DJ40_3569 SM00862 Transcriptional regulatory protein, C terminal DJ40_3570 SM00387 Histidine kinase-like ATPases DJ40_3570 SM00388 His Kinase A (phosphoacceptor) domain DJ40_358 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_358 SM00387 Histidine kinase-like ATPases DJ40_3580 SM00796 Allophanate hydrolase subunit 1 DJ40_3581 SM00797 Allophanate hydrolase subunit 2 DJ40_3586 SM00986 Uracil DNA glycosylase superfamily DJ40_3586 SM00987 UreE urease accessory protein, C-terminal domain DJ40_3590 SM00248 ankyrin repeats DJ40_3592 SM00487 DEAD-like helicases superfamily DJ40_3592 SM00490 helicase superfamily c-terminal domain DJ40_3602 SM00358 Double-stranded RNA binding motif DJ40_3602 SM00535 Ribonuclease III family DJ40_3617 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3618 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3629 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3664 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_3665 SM01211 DJ40_3665 DJ40_3668 SM01321 DJ40_3668 DJ40_3669 SM00387 Histidine kinase-like ATPases DJ40_3669 SM00388 His Kinase A (phosphoacceptor) domain DJ40_3671 SM00382 ATPases associated with a variety of cellular activities DJ40_3671 SM00448 cheY-homologous receiver domain DJ40_3673 SM00938 Nitrogen regulatory protein P-II DJ40_3688 SM00271 DnaJ molecular chaperone homology domain DJ40_3694 SM00869 Autotransporter beta-domain DJ40_3695 SM00869 Autotransporter beta-domain DJ40_3696 SM00247 Beta/gamma crystallins DJ40_3697 SM00562 DJ40_3697 DJ40_3699 SM00028 Tetratricopeptide repeats DJ40_3700 SM00530 Helix-turn-helix XRE-family like proteins DJ40_3704 SM00564 beta-propeller repeat DJ40_3709 SM00116 Domain in cystathionine beta-synthase and other proteins. DJ40_3709 SM01240 DJ40_3709 DJ40_371 SM00382 ATPases associated with a variety of cellular activities DJ40_3720 SM00046 Diacylglycerol kinase catalytic domain (presumed) DJ40_3723 SM00448 cheY-homologous receiver domain DJ40_3723 SM00862 Transcriptional regulatory protein, C terminal DJ40_3724 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_3724 SM00387 Histidine kinase-like ATPases DJ40_3724 SM00388 His Kinase A (phosphoacceptor) domain DJ40_3729 SM00382 ATPases associated with a variety of cellular activities DJ40_3730 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_3737 SM00924 MgtE intracellular N domain DJ40_3742 SM00382 ATPases associated with a variety of cellular activities DJ40_3757 SM01130 DJ40_3757 DJ40_3771 SM00382 ATPases associated with a variety of cellular activities DJ40_3778 SM00421 helix_turn_helix, Lux Regulon DJ40_3778 SM00448 cheY-homologous receiver domain DJ40_3781 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ40_3785 SM00919 Malic enzyme, NAD binding domain DJ40_3785 SM01274 DJ40_3785 DJ40_379 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ40_379 SM01134 DJ40_379 DJ40_3790 SM00869 Autotransporter beta-domain DJ40_3794 SM01130 DJ40_3794 DJ40_3796 SM00364 Leucine-rich repeats, bacterial type DJ40_3804 SM00382 ATPases associated with a variety of cellular activities DJ40_3806 SM00448 cheY-homologous receiver domain DJ40_3806 SM00862 Transcriptional regulatory protein, C terminal DJ40_3807 SM00387 Histidine kinase-like ATPases DJ40_3807 SM00388 His Kinase A (phosphoacceptor) domain DJ40_3808 SM00327 von Willebrand factor (vWF) type A domain DJ40_3813 SM00450 Rhodanese Homology Domain DJ40_3814 SM00382 ATPases associated with a variety of cellular activities DJ40_3816 SM00448 cheY-homologous receiver domain DJ40_3816 SM00862 Transcriptional regulatory protein, C terminal DJ40_3817 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_3817 SM00387 Histidine kinase-like ATPases DJ40_3817 SM00388 His Kinase A (phosphoacceptor) domain DJ40_3823 SM00771 ZipA, C-terminal domain (FtsZ-binding) DJ40_3824 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DJ40_3824 SM00292 breast cancer carboxy-terminal domain DJ40_3824 SM00532 Ligase N family DJ40_3854 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ40_3859 SM00382 ATPases associated with a variety of cellular activities DJ40_3863 SM00421 helix_turn_helix, Lux Regulon DJ40_3872 SM00382 ATPases associated with a variety of cellular activities DJ40_3872 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_3895 SM00382 ATPases associated with a variety of cellular activities DJ40_3909 SM00855 Phosphoglycerate mutase family DJ40_3910 SM00463 Small MutS-related domain DJ40_3918 SM00825 Beta-ketoacyl synthase DJ40_3923 SM00342 helix_turn_helix, arabinose operon control protein DJ40_3925 SM00859 Semialdehyde dehydrogenase, NAD binding domain DJ40_393 SM00421 helix_turn_helix, Lux Regulon DJ40_393 SM00448 cheY-homologous receiver domain DJ40_3934 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_3937 SM00382 ATPases associated with a variety of cellular activities DJ40_3939 SM00052 Putative diguanylate phosphodiesterase DJ40_394 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_394 SM00387 Histidine kinase-like ATPases DJ40_394 SM00388 His Kinase A (phosphoacceptor) domain DJ40_394 SM00448 cheY-homologous receiver domain DJ40_3945 SM00354 helix_turn _helix lactose operon repressor DJ40_3953 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ40_3960 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DJ40_3961 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DJ40_3961 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DJ40_3974 SM00354 helix_turn _helix lactose operon repressor DJ40_3986 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DJ40_3991 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DJ40_3991 SM00091 PAS domain DJ40_3991 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ40_3992 SM00382 ATPases associated with a variety of cellular activities DJ40_3994 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_3994 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DJ40_4004 SM00829 Enoylreductase DJ40_4006 SM00382 ATPases associated with a variety of cellular activities DJ40_4008 SM00354 helix_turn _helix lactose operon repressor DJ40_401 SM00382 ATPases associated with a variety of cellular activities DJ40_4010 SM01329 DJ40_4010 DJ40_4021 SM00382 ATPases associated with a variety of cellular activities DJ40_4023 SM00354 helix_turn _helix lactose operon repressor DJ40_4044 SM00421 helix_turn_helix, Lux Regulon DJ40_4046 SM01091 Transporter associated domain DJ40_4055 SM00450 Rhodanese Homology Domain DJ40_4057 SM00421 helix_turn_helix, Lux Regulon DJ40_4063 SM00316 Ribosomal protein S1-like RNA-binding domain DJ40_4064 SM00363 S4 RNA-binding domain DJ40_407 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_407 SM00866 DJ40_407 DJ40_4070 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DJ40_4071 SM00822 DJ40_4071 DJ40_4073 SM00825 Beta-ketoacyl synthase DJ40_4091 SM00487 DEAD-like helicases superfamily DJ40_4091 SM00490 helicase superfamily c-terminal domain DJ40_4091 SM00982 DJ40_4091 DJ40_4091 SM01058 CarD-like/TRCF domain DJ40_4093 SM00382 ATPases associated with a variety of cellular activities DJ40_4098 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. DJ40_4099 SM00387 Histidine kinase-like ATPases DJ40_4099 SM00388 His Kinase A (phosphoacceptor) domain DJ40_4100 SM00448 cheY-homologous receiver domain DJ40_4100 SM00862 Transcriptional regulatory protein, C terminal DJ40_4107 SM01329 DJ40_4107 DJ40_4118 SM00778 Zinc-binding domain of primase-helicase DJ40_4120 SM00220 Serine/Threonine protein kinases, catalytic domain DJ40_4139 SM00354 helix_turn _helix lactose operon repressor DJ40_4141 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DJ40_4141 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ40_4148 SM00344 helix_turn_helix ASNC type DJ40_4150 SM00829 Enoylreductase DJ40_4151 SM01038 Beta galactosidase small chain DJ40_4152 SM00357 Cold shock protein domain DJ40_4154 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ40_4154 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_4154 SM00319 Homologues of the ligand binding domain of Tar DJ40_4156 SM00831 Cation transporter/ATPase, N-terminus DJ40_4161 SM00073 Histidine Phosphotransfer domain DJ40_4161 SM00260 Two component signalling adaptor domain DJ40_4161 SM00387 Histidine kinase-like ATPases DJ40_4161 SM01231 DJ40_4161 DJ40_4162 SM00260 Two component signalling adaptor domain DJ40_4165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ40_4165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_4165 SM00319 Homologues of the ligand binding domain of Tar DJ40_4166 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ40_4166 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_4166 SM00319 Homologues of the ligand binding domain of Tar DJ40_4167 SM00138 Methyltransferase, chemotaxis proteins DJ40_4168 SM00448 cheY-homologous receiver domain DJ40_4169 SM00448 cheY-homologous receiver domain DJ40_4171 SM00644 DJ40_4171 DJ40_4176 SM01005 Alanine racemase, C-terminal domain DJ40_4182 SM01022 DJ40_4182 DJ40_4184 SM00972 Spore Coat Protein U domain DJ40_4187 SM00972 Spore Coat Protein U domain DJ40_4188 SM00972 Spore Coat Protein U domain DJ40_4189 SM00972 Spore Coat Protein U domain DJ40_4193 SM00945 ProQ/FINO family DJ40_4194 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DJ40_4194 SM00245 tail specific protease DJ40_42 SM00953 DJ40_42 DJ40_4206 SM00346 helix_turn_helix isocitrate lyase regulation DJ40_4207 SM00644 DJ40_4207 DJ40_4212 SM00382 ATPases associated with a variety of cellular activities DJ40_4224 SM00382 ATPases associated with a variety of cellular activities DJ40_4244 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DJ40_4249 SM00873 B3/4 domain DJ40_4249 SM00874 tRNA synthetase B5 domain DJ40_4249 SM00896 Ferredoxin-fold anticodon binding domain DJ40_4250 SM00411 bacterial (prokaryotic) histone like domain DJ40_4254 SM00382 ATPases associated with a variety of cellular activities DJ40_4273 SM00382 ATPases associated with a variety of cellular activities DJ40_434 SM00530 Helix-turn-helix XRE-family like proteins DJ40_44 SM00091 PAS domain DJ40_44 SM00382 ATPases associated with a variety of cellular activities DJ40_443 SM00479 DJ40_443 DJ40_46 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DJ40_482 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DJ40_482 SM00465 GIY-YIG type nucleases (URI domain) DJ40_502 SM00382 ATPases associated with a variety of cellular activities DJ40_504 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_504 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DJ40_512 SM00342 helix_turn_helix, arabinose operon control protein DJ40_513 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DJ40_514 SM00478 endonuclease III DJ40_521 SM00382 ATPases associated with a variety of cellular activities DJ40_535 SM00382 ATPases associated with a variety of cellular activities DJ40_538 SM01007 Class II Aldolase and Adducin N-terminal domain DJ40_542 SM00047 Lysozyme subfamily 2 DJ40_55 SM00890 Domain of unknown function DJ40_551 SM00858 DJ40_551 DJ40_554 SM00634 Bacterial Ig-like domain (group 1) DJ40_569 SM01022 DJ40_569 DJ40_571 SM00487 DEAD-like helicases superfamily DJ40_571 SM00490 helicase superfamily c-terminal domain DJ40_577 SM00903 Flavin reductase like domain DJ40_587 SM00347 helix_turn_helix multiple antibiotic resistance protein DJ40_588 SM01091 Transporter associated domain DJ40_595 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DJ40_595 SM00091 PAS domain DJ40_595 SM00267 diguanylate cyclase DJ40_599 SM00357 Cold shock protein domain DJ40_609 SM00342 helix_turn_helix, arabinose operon control protein DJ40_611 SM00382 ATPases associated with a variety of cellular activities DJ40_612 SM00090 RIO-like kinase DJ40_616 SM00354 helix_turn _helix lactose operon repressor DJ40_625 SM00421 helix_turn_helix, Lux Regulon DJ40_625 SM00448 cheY-homologous receiver domain DJ40_635 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DJ40_640 SM00634 Bacterial Ig-like domain (group 1) DJ40_647 SM00382 ATPases associated with a variety of cellular activities DJ40_659 SM01350 DJ40_659 DJ40_667 SM00382 ATPases associated with a variety of cellular activities DJ40_669 SM01006 Siderophore biosynthesis protein domain DJ40_67 SM00382 ATPases associated with a variety of cellular activities DJ40_67 SM00487 DEAD-like helicases superfamily DJ40_67 SM00490 helicase superfamily c-terminal domain DJ40_67 SM00847 Helicase associated domain (HA2) Add an annotation DJ40_673 SM01091 Transporter associated domain DJ40_686 SM00919 Malic enzyme, NAD binding domain DJ40_686 SM01274 DJ40_686 DJ40_689 SM00382 ATPases associated with a variety of cellular activities DJ40_69 SM00530 Helix-turn-helix XRE-family like proteins DJ40_695 SM00829 Enoylreductase DJ40_70 SM00020 Trypsin-like serine protease DJ40_700 SM00382 ATPases associated with a variety of cellular activities DJ40_702 SM00852 Probable molybdopterin binding domain DJ40_705 SM00382 ATPases associated with a variety of cellular activities DJ40_73 SM00867 YceI-like domain DJ40_730 SM00382 ATPases associated with a variety of cellular activities DJ40_730 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_740 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DJ40_748 SM00825 Beta-ketoacyl synthase DJ40_76 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_76 SM00387 Histidine kinase-like ATPases DJ40_76 SM00388 His Kinase A (phosphoacceptor) domain DJ40_761 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DJ40_762 SM00992 Hemimethylated DNA-binding protein YccV like DJ40_763 SM00881 CoA binding domain DJ40_765 SM00851 MGS-like domain DJ40_77 SM00448 cheY-homologous receiver domain DJ40_77 SM00862 Transcriptional regulatory protein, C terminal DJ40_776 SM00825 Beta-ketoacyl synthase DJ40_780 SM00382 ATPases associated with a variety of cellular activities DJ40_781 SM00981 DJ40_781 DJ40_792 SM00849 Metallo-beta-lactamase superfamily DJ40_802 SM00357 Cold shock protein domain DJ40_806 SM00382 ATPases associated with a variety of cellular activities DJ40_807 SM00849 Metallo-beta-lactamase superfamily DJ40_808 SM00411 bacterial (prokaryotic) histone like domain DJ40_81 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DJ40_81 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DJ40_810 SM00316 Ribosomal protein S1-like RNA-binding domain DJ40_816 SM00870 DJ40_816 DJ40_824 SM00382 ATPases associated with a variety of cellular activities DJ40_827 SM00843 DJ40_827 DJ40_828 SM00344 helix_turn_helix ASNC type DJ40_830 SM00382 ATPases associated with a variety of cellular activities DJ40_831 SM00382 ATPases associated with a variety of cellular activities DJ40_833 SM00316 Ribosomal protein S1-like RNA-binding domain DJ40_834 SM00382 ATPases associated with a variety of cellular activities DJ40_834 SM01086 C-terminal, D2-small domain, of ClpB protein DJ40_836 SM00357 Cold shock protein domain DJ40_837 SM00382 ATPases associated with a variety of cellular activities DJ40_84 SM00100 Cyclic nucleotide-monophosphate binding domain DJ40_84 SM00419 helix_turn_helix, cAMP Regulatory protein DJ40_849 SM00830 Chorismate mutase type II DJ40_850 SM00382 ATPases associated with a variety of cellular activities DJ40_851 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_851 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DJ40_857 SM00382 ATPases associated with a variety of cellular activities DJ40_86 SM00098 Alkaline phosphatase homologues DJ40_860 SM00244 prohibitin homologues DJ40_861 SM00062 Bacterial periplasmic substrate-binding proteins DJ40_861 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DJ40_866 SM00382 ATPases associated with a variety of cellular activities DJ40_873 SM00014 Acid phosphatase homologues DJ40_874 SM01133 DJ40_874 DJ40_875 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ40_875 SM01134 DJ40_875 DJ40_877 SM00936 Penicillin-binding protein 5, C-terminal domain DJ40_879 SM00382 ATPases associated with a variety of cellular activities DJ40_879 SM00930 DJ40_879 DJ40_885 SM00382 ATPases associated with a variety of cellular activities DJ40_892 SM00518 AP endonuclease family 2 DJ40_897 SM00862 Transcriptional regulatory protein, C terminal DJ40_9 SM00479 DJ40_9 DJ40_903 SM00382 ATPases associated with a variety of cellular activities DJ40_913 SM00841 Elongation factor P, C-terminal DJ40_913 SM01185 DJ40_913 DJ40_916 SM00345 helix_turn_helix gluconate operon transcriptional repressor DJ40_916 SM00895 DJ40_916 DJ40_918 SM00833 Cobalamin synthesis protein cobW C-terminal domain DJ40_919 SM00014 Acid phosphatase homologues DJ40_921 SM00052 Putative diguanylate phosphodiesterase DJ40_925 SM00382 ATPases associated with a variety of cellular activities DJ40_928 SM00363 S4 RNA-binding domain DJ40_929 SM00487 DEAD-like helicases superfamily DJ40_929 SM00490 helicase superfamily c-terminal domain DJ40_96 SM00382 ATPases associated with a variety of cellular activities DJ40_962 SM00420 helix_turn_helix, Deoxyribose operon repressor DJ40_962 SM01134 DJ40_962 DJ40_963 SM01007 Class II Aldolase and Adducin N-terminal domain DJ40_966 SM00530 Helix-turn-helix XRE-family like proteins DJ40_969 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DJ40_969 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DJ40_980 SM00387 Histidine kinase-like ATPases DJ40_981 SM00421 helix_turn_helix, Lux Regulon DJ40_981 SM00448 cheY-homologous receiver domain DJ40_982 SM00387 Histidine kinase-like ATPases DJ40_982 SM00388 His Kinase A (phosphoacceptor) domain DJ40_982 SM00448 cheY-homologous receiver domain DJ40_983 SM00434 DNA Topoisomerase IV DJ40_989 SM00852 Probable molybdopterin binding domain DJ40_992 SM01060 DJ40_992 DJ40_993 SM00487 DEAD-like helicases superfamily DJ40_993 SM00488 DJ40_993 DJ40_993 SM00491 DJ40_993