locus-tag class description YpsIP31758_0001 PF00258 Flavodoxin YpsIP31758_0002 PF01037 Lrp/AsnC ligand binding domain YpsIP31758_0003 PF03590 Aspartate-ammonia ligase YpsIP31758_0004 PF05762 VWA domain containing CoxE-like protein YpsIP31758_0005 PF12592 Protein of unknown function (DUF3763) YpsIP31758_0005 PF17868 AAA lid domain YpsIP31758_0005 PF07728 AAA domain (dynein-related subfamily) YpsIP31758_0006 PF02705 K+ potassium transporter YpsIP31758_0007 PF05025 RbsD / FucU transport protein family YpsIP31758_0008 PF00294 pfkB family carbohydrate kinase YpsIP31758_0009 PF07690 Major Facilitator Superfamily YpsIP31758_0011 PF07729 FCD domain YpsIP31758_0011 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_0015 PF00872 Transposase, Mutator family YpsIP31758_0016 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YpsIP31758_0017 PF12804 MobA-like NTP transferase domain YpsIP31758_0018 PF06288 Protein of unknown function (DUF1040) YpsIP31758_0019 PF01636 Phosphotransferase enzyme family YpsIP31758_0020 PF01323 DSBA-like thioredoxin domain YpsIP31758_0021 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YpsIP31758_0021 PF00476 DNA polymerase family A YpsIP31758_0021 PF01612 3'-5' exonuclease YpsIP31758_0021 PF01367 5'-3' exonuclease, C-terminal SAM fold YpsIP31758_0022 PF01926 50S ribosome-binding GTPase YpsIP31758_0023 PF04220 Der GTPase activator (YihI) YpsIP31758_0024 PF06969 HemN C-terminal domain YpsIP31758_0024 PF04055 Radical SAM superfamily YpsIP31758_0025 PF00072 Response regulator receiver domain YpsIP31758_0025 PF02954 Bacterial regulatory protein, Fis family YpsIP31758_0025 PF00158 Sigma-54 interaction domain YpsIP31758_0026 PF00989 PAS fold YpsIP31758_0026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_0026 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_0027 PF00120 Glutamine synthetase, catalytic domain YpsIP31758_0027 PF03951 Glutamine synthetase, beta-Grasp domain YpsIP31758_0029 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_0030 PF03631 Virulence factor BrkB YpsIP31758_0031 PF02580 D-Tyr-tRNA(Tyr) deacylase YpsIP31758_0032 PF00583 Acetyltransferase (GNAT) family YpsIP31758_0032 PF09500 Putative thioesterase (yiiD_Cterm) YpsIP31758_0033 PF05170 AsmA family YpsIP31758_0034 PF00860 Permease family YpsIP31758_0036 PF03616 Sodium/glutamate symporter YpsIP31758_0037 PF17191 RecG wedge domain YpsIP31758_0037 PF00270 DEAD/DEAH box helicase YpsIP31758_0037 PF00271 Helicase conserved C-terminal domain YpsIP31758_0038 PF00588 SpoU rRNA Methylase family YpsIP31758_0038 PF12105 SpoU, rRNA methylase, C-terminal YpsIP31758_0039 PF04607 Region found in RelA / SpoT proteins YpsIP31758_0039 PF13291 ACT domain YpsIP31758_0039 PF02824 TGS domain YpsIP31758_0040 PF01192 RNA polymerase Rpb6 YpsIP31758_0041 PF00625 Guanylate kinase YpsIP31758_0042 PF01653 NAD-dependent DNA ligase adenylation domain YpsIP31758_0042 PF03120 NAD-dependent DNA ligase OB-fold domain YpsIP31758_0043 PF03458 UPF0126 domain YpsIP31758_0047 PF05638 Type VI secretion system effector, Hcp YpsIP31758_0049 PF10548 P22AR C-terminal domain YpsIP31758_0049 PF08346 AntA/AntB antirepressor YpsIP31758_0055 PF08340 Domain of unknown function (DUF1732) YpsIP31758_0055 PF03755 YicC-like family, N-terminal region YpsIP31758_0056 PF03725 3' exoribonuclease family, domain 2 YpsIP31758_0056 PF01138 3' exoribonuclease family, domain 1 YpsIP31758_0057 PF00156 Phosphoribosyl transferase domain YpsIP31758_0058 PF00440 Bacterial regulatory proteins, tetR family YpsIP31758_0059 PF00692 dUTPase YpsIP31758_0060 PF04127 DNA / pantothenate metabolism flavoprotein YpsIP31758_0060 PF02441 Flavoprotein YpsIP31758_0061 PF04002 RadC-like JAB domain YpsIP31758_0062 PF00830 Ribosomal L28 family YpsIP31758_0063 PF00471 Ribosomal protein L33 YpsIP31758_0064 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YpsIP31758_0064 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YpsIP31758_0064 PF06827 Zinc finger found in FPG and IleRS YpsIP31758_0065 PF01467 Cytidylyltransferase-like YpsIP31758_0066 PF00535 Glycosyl transferase family 2 YpsIP31758_0067 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YpsIP31758_0068 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YpsIP31758_0069 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YpsIP31758_0070 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_0071 PF00155 Aminotransferase class I and II YpsIP31758_0072 PF00107 Zinc-binding dehydrogenase YpsIP31758_0072 PF08240 Alcohol dehydrogenase GroES-like domain YpsIP31758_0073 PF04748 Divergent polysaccharide deacetylase YpsIP31758_0074 PF01551 Peptidase family M23 YpsIP31758_0075 PF01676 Metalloenzyme superfamily YpsIP31758_0075 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YpsIP31758_0076 PF00581 Rhodanese-like domain YpsIP31758_0077 PF00462 Glutaredoxin YpsIP31758_0078 PF02556 Preprotein translocase subunit SecB YpsIP31758_0079 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YpsIP31758_0079 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YpsIP31758_0080 PF00132 Bacterial transferase hexapeptide (six repeats) YpsIP31758_0080 PF06426 Serine acetyltransferase, N-terminal YpsIP31758_0081 PF00588 SpoU rRNA Methylase family YpsIP31758_0082 PF02805 Metal binding domain of Ada YpsIP31758_0082 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YpsIP31758_0082 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YpsIP31758_0082 PF12833 Helix-turn-helix domain YpsIP31758_0083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_0083 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_0083 PF16527 Two-component sensor protein CpxA, periplasmic domain YpsIP31758_0083 PF00672 HAMP domain YpsIP31758_0084 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_0084 PF00072 Response regulator receiver domain YpsIP31758_0085 PF07813 LTXXQ motif family protein YpsIP31758_0086 PF04754 Putative transposase, YhgA-like YpsIP31758_0088 PF16916 Dimerisation domain of Zinc Transporter YpsIP31758_0088 PF01545 Cation efflux family YpsIP31758_0089 PF00365 Phosphofructokinase YpsIP31758_0092 PF00939 Sodium:sulfate symporter transmembrane region YpsIP31758_0093 PF03737 Aldolase/RraA YpsIP31758_0094 PF02585 GlcNAc-PI de-N-acetylase YpsIP31758_0095 PF03466 LysR substrate binding domain YpsIP31758_0095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0096 PF00121 Triosephosphate isomerase YpsIP31758_0097 PF07305 Protein of unknown function (DUF1454) YpsIP31758_0098 PF05656 Protein of unknown function (DUF805) YpsIP31758_0099 PF00175 Oxidoreductase NAD-binding domain YpsIP31758_0099 PF00970 Oxidoreductase FAD-binding domain YpsIP31758_0100 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YpsIP31758_0101 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YpsIP31758_0101 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_0102 PF00230 Major intrinsic protein YpsIP31758_0103 PF06005 Cell division protein ZapB YpsIP31758_0105 PF00664 ABC transporter transmembrane region YpsIP31758_0105 PF00005 ABC transporter YpsIP31758_0105 PF03412 Peptidase C39 family YpsIP31758_0106 PF00529 HlyD membrane-fusion protein of T1SS YpsIP31758_0106 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_0110 PF03737 Aldolase/RraA YpsIP31758_0111 PF01040 UbiA prenyltransferase family YpsIP31758_0112 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_0112 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_0112 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_0113 PF00227 Proteasome subunit YpsIP31758_0114 PF05036 Sporulation related domain YpsIP31758_0115 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_0116 PF18074 Primosomal protein N C-terminal domain YpsIP31758_0116 PF00271 Helicase conserved C-terminal domain YpsIP31758_0116 PF00270 DEAD/DEAH box helicase YpsIP31758_0116 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YpsIP31758_0116 PF17764 3′ DNA-binding domain (3′BD) YpsIP31758_0118 PF01197 Ribosomal protein L31 YpsIP31758_0119 PF05360 yiaA/B two helix domain YpsIP31758_0120 PF01340 Met Apo-repressor, MetJ YpsIP31758_0121 PF01053 Cys/Met metabolism PLP-dependent enzyme YpsIP31758_0122 PF00742 Homoserine dehydrogenase YpsIP31758_0122 PF03447 Homoserine dehydrogenase, NAD binding domain YpsIP31758_0122 PF00696 Amino acid kinase family YpsIP31758_0123 PF02219 Methylenetetrahydrofolate reductase YpsIP31758_0125 PF00311 Phosphoenolpyruvate carboxylase YpsIP31758_0126 PF01546 Peptidase family M20/M25/M40 YpsIP31758_0126 PF07687 Peptidase dimerisation domain YpsIP31758_0127 PF01118 Semialdehyde dehydrogenase, NAD binding domain YpsIP31758_0127 PF02774 Semialdehyde dehydrogenase, dimerisation domain YpsIP31758_0128 PF00696 Amino acid kinase family YpsIP31758_0129 PF14698 Argininosuccinate lyase C-terminal YpsIP31758_0129 PF00206 Lyase YpsIP31758_0130 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_0130 PF00593 TonB dependent receptor YpsIP31758_0132 PF00005 ABC transporter YpsIP31758_0132 PF00664 ABC transporter transmembrane region YpsIP31758_0133 PF00529 HlyD membrane-fusion protein of T1SS YpsIP31758_0134 PF03544 Gram-negative bacterial TonB protein C-terminal YpsIP31758_0135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YpsIP31758_0135 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_0136 PF08534 Redoxin YpsIP31758_0136 PF00462 Glutaredoxin YpsIP31758_0137 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YpsIP31758_0137 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_0138 PF03466 LysR substrate binding domain YpsIP31758_0138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0139 PF00440 Bacterial regulatory proteins, tetR family YpsIP31758_0140 PF07226 Protein of unknown function (DUF1422) YpsIP31758_0141 PF05958 tRNA (Uracil-5-)-methyltransferase YpsIP31758_0142 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_0142 PF00593 TonB dependent receptor YpsIP31758_0143 PF01177 Asp/Glu/Hydantoin racemase YpsIP31758_0147 PF13407 Periplasmic binding protein domain YpsIP31758_0148 PF00005 ABC transporter YpsIP31758_0149 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_0150 PF03466 LysR substrate binding domain YpsIP31758_0150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0151 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_0152 PF04219 Protein of unknown function, DUF YpsIP31758_0153 PF13335 Magnesium chelatase, subunit ChlI C-terminal YpsIP31758_0153 PF01078 Magnesium chelatase, subunit ChlI YpsIP31758_0154 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YpsIP31758_0154 PF00205 Thiamine pyrophosphate enzyme, central domain YpsIP31758_0154 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YpsIP31758_0156 PF01063 Amino-transferase class IV YpsIP31758_0157 PF00920 Dehydratase family YpsIP31758_0158 PF00585 C-terminal regulatory domain of Threonine dehydratase YpsIP31758_0158 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_0162 PF03466 LysR substrate binding domain YpsIP31758_0162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0163 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YpsIP31758_0163 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YpsIP31758_0164 PF06958 S-type Pyocin YpsIP31758_0165 PF01320 Colicin immunity protein / pyocin immunity protein YpsIP31758_0167 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_0167 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_0169 PF13953 PapC C-terminal domain YpsIP31758_0169 PF13954 PapC N-terminal domain YpsIP31758_0169 PF00577 Outer membrane usher protein YpsIP31758_0170 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_0170 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_0175 PF13361 UvrD-like helicase C-terminal domain YpsIP31758_0175 PF00580 UvrD/REP helicase N-terminal domain YpsIP31758_0177 PF02541 Ppx/GppA phosphatase family YpsIP31758_0178 PF00271 Helicase conserved C-terminal domain YpsIP31758_0178 PF00270 DEAD/DEAH box helicase YpsIP31758_0179 PF00085 Thioredoxin YpsIP31758_0180 PF07498 Rho termination factor, N-terminal domain YpsIP31758_0180 PF07497 Rho termination factor, RNA-binding domain YpsIP31758_0180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YpsIP31758_0181 PF01797 Transposase IS200 like YpsIP31758_0182 PF00953 Glycosyl transferase family 4 YpsIP31758_0183 PF02706 Chain length determinant protein YpsIP31758_0184 PF02350 UDP-N-acetylglucosamine 2-epimerase YpsIP31758_0185 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YpsIP31758_0185 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YpsIP31758_0185 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YpsIP31758_0186 PF16363 GDP-mannose 4,6 dehydratase YpsIP31758_0187 PF00483 Nucleotidyl transferase YpsIP31758_0189 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YpsIP31758_0190 PF01943 Polysaccharide biosynthesis protein YpsIP31758_0191 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YpsIP31758_0192 PF06899 WzyE protein, O-antigen assembly polymerase YpsIP31758_0193 PF03808 Glycosyl transferase WecB/TagA/CpsF family YpsIP31758_0194 PF00324 Amino acid permease YpsIP31758_0195 PF07719 Tetratricopeptide repeat YpsIP31758_0195 PF07219 HemY protein N-terminus YpsIP31758_0196 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YpsIP31758_0197 PF02602 Uroporphyrinogen-III synthase HemD YpsIP31758_0198 PF03900 Porphobilinogen deaminase, C-terminal domain YpsIP31758_0198 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YpsIP31758_0201 PF12633 Adenylate cyclase NT domain YpsIP31758_0201 PF01295 Adenylate cyclase, class-I YpsIP31758_0203 PF01491 Frataxin-like domain YpsIP31758_0204 PF13627 Prokaryotic lipoprotein-attachment site YpsIP31758_0205 PF01678 Diaminopimelate epimerase YpsIP31758_0206 PF04340 Protein of unknown function, DUF484 YpsIP31758_0207 PF02899 Phage integrase, N-terminal SAM-like domain YpsIP31758_0207 PF00589 Phage integrase family YpsIP31758_0208 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_0209 PF00580 UvrD/REP helicase N-terminal domain YpsIP31758_0209 PF13361 UvrD-like helicase C-terminal domain YpsIP31758_0212 PF09370 Phosphoenolpyruvate hydrolase-like YpsIP31758_0214 PF01544 CorA-like Mg2+ transporter protein YpsIP31758_0215 PF00892 EamA-like transporter family YpsIP31758_0216 PF03061 Thioesterase superfamily YpsIP31758_0217 PF02253 Phospholipase A1 YpsIP31758_0218 PF00271 Helicase conserved C-terminal domain YpsIP31758_0218 PF09382 RQC domain YpsIP31758_0218 PF00570 HRDC domain YpsIP31758_0218 PF16124 RecQ zinc-binding YpsIP31758_0218 PF00270 DEAD/DEAH box helicase YpsIP31758_0219 PF01810 LysE type translocator YpsIP31758_0220 PF01810 LysE type translocator YpsIP31758_0221 PF12146 Serine aminopeptidase, S33 YpsIP31758_0224 PF03009 Glycerophosphoryl diester phosphodiesterase family YpsIP31758_0225 PF07690 Major Facilitator Superfamily YpsIP31758_0227 PF04324 BFD-like [2Fe-2S] binding domain YpsIP31758_0227 PF01266 FAD dependent oxidoreductase YpsIP31758_0228 PF00890 FAD binding domain YpsIP31758_0229 PF02754 Cysteine-rich domain YpsIP31758_0229 PF13183 4Fe-4S dicluster domain YpsIP31758_0230 PF08786 DcrB YpsIP31758_0231 PF02592 Putative vitamin uptake transporter YpsIP31758_0232 PF01206 Sulfurtransferase TusA YpsIP31758_0233 PF00403 Heavy-metal-associated domain YpsIP31758_0234 PF07947 YhhN family YpsIP31758_0237 PF06611 Protein of unknown function (DUF1145) YpsIP31758_0239 PF02881 SRP54-type protein, helical bundle domain YpsIP31758_0239 PF00448 SRP54-type protein, GTPase domain YpsIP31758_0239 PF02881 SRP54-type protein, helical bundle domain YpsIP31758_0239 PF00448 SRP54-type protein, GTPase domain YpsIP31758_0240 PF00005 ABC transporter YpsIP31758_0241 PF02687 FtsX-like permease family YpsIP31758_0241 PF18075 FtsX extracellular domain YpsIP31758_0242 PF04542 Sigma-70 region 2 YpsIP31758_0242 PF00140 Sigma-70 factor, region 1.2 YpsIP31758_0242 PF04545 Sigma-70, region 4 YpsIP31758_0243 PF12568 Acetyltransferase (GNAT) domain, PanZ YpsIP31758_0244 PF13458 Periplasmic binding protein YpsIP31758_0245 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_0246 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_0246 PF11862 Domain of unknown function (DUF3382) YpsIP31758_0247 PF12399 Branched-chain amino acid ATP-binding cassette transporter YpsIP31758_0247 PF00005 ABC transporter YpsIP31758_0248 PF00005 ABC transporter YpsIP31758_0256 PF13416 Bacterial extracellular solute-binding protein YpsIP31758_0257 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0258 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0259 PF00005 ABC transporter YpsIP31758_0259 PF17912 MalK OB fold domain YpsIP31758_0260 PF03009 Glycerophosphoryl diester phosphodiesterase family YpsIP31758_0261 PF03547 Membrane transport protein YpsIP31758_0262 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0262 PF03466 LysR substrate binding domain YpsIP31758_0263 PF00892 EamA-like transporter family YpsIP31758_0264 PF08267 Cobalamin-independent synthase, N-terminal domain YpsIP31758_0264 PF01717 Cobalamin-independent synthase, Catalytic domain YpsIP31758_0265 PF01738 Dienelactone hydrolase family YpsIP31758_0266 PF01048 Phosphorylase superfamily YpsIP31758_0268 PF02554 Carbon starvation protein CstA YpsIP31758_0268 PF13722 5TM C-terminal transporter carbon starvation CstA YpsIP31758_0269 PF09335 SNARE associated Golgi protein YpsIP31758_0270 PF02646 RmuC family YpsIP31758_0271 PF01209 ubiE/COQ5 methyltransferase family YpsIP31758_0272 PF02036 SCP-2 sterol transfer family YpsIP31758_0273 PF03109 ABC1 family YpsIP31758_0274 PF02416 mttA/Hcf106 family YpsIP31758_0276 PF00902 Sec-independent protein translocase protein (TatC) YpsIP31758_0277 PF01026 TatD related DNase YpsIP31758_0278 PF00490 Delta-aminolevulinic acid dehydratase YpsIP31758_0279 PF02357 Transcription termination factor nusG YpsIP31758_0280 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YpsIP31758_0281 PF00175 Oxidoreductase NAD-binding domain YpsIP31758_0281 PF00970 Oxidoreductase FAD-binding domain YpsIP31758_0282 PF00108 Thiolase, N-terminal domain YpsIP31758_0282 PF02803 Thiolase, C-terminal domain YpsIP31758_0283 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YpsIP31758_0283 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YpsIP31758_0283 PF00378 Enoyl-CoA hydratase/isomerase YpsIP31758_0284 PF00557 Metallopeptidase family M24 YpsIP31758_0285 PF01205 Uncharacterized protein family UPF0029 YpsIP31758_0285 PF09186 Domain of unknown function (DUF1949) YpsIP31758_0286 PF02386 Cation transport protein YpsIP31758_0287 PF12724 Flavodoxin domain YpsIP31758_0291 PF00872 Transposase, Mutator family YpsIP31758_0292 PF04204 Homoserine O-succinyltransferase YpsIP31758_0294 PF01274 Malate synthase YpsIP31758_0295 PF00463 Isocitrate lyase family YpsIP31758_0296 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YpsIP31758_0297 PF09339 IclR helix-turn-helix domain YpsIP31758_0297 PF01614 Bacterial transcriptional regulator YpsIP31758_0298 PF02574 Homocysteine S-methyltransferase YpsIP31758_0298 PF00809 Pterin binding enzyme YpsIP31758_0298 PF02965 Vitamin B12 dependent methionine synthase, activation domain YpsIP31758_0298 PF02607 B12 binding domain YpsIP31758_0298 PF02310 B12 binding domain YpsIP31758_0299 PF13332 Hemagglutinin repeat YpsIP31758_0299 PF05860 haemagglutination activity domain YpsIP31758_0300 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YpsIP31758_0300 PF08479 POTRA domain, ShlB-type YpsIP31758_0300 PF17287 POTRA domain YpsIP31758_0301 PF01842 ACT domain YpsIP31758_0301 PF00696 Amino acid kinase family YpsIP31758_0302 PF00342 Phosphoglucose isomerase YpsIP31758_0303 PF06146 Phosphate-starvation-inducible E YpsIP31758_0304 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0305 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0305 PF14785 Maltose transport system permease protein MalF P2 domain YpsIP31758_0306 PF01547 Bacterial extracellular solute-binding protein YpsIP31758_0308 PF17912 MalK OB fold domain YpsIP31758_0308 PF00005 ABC transporter YpsIP31758_0309 PF02264 LamB porin YpsIP31758_0310 PF07148 Maltose operon periplasmic protein precursor (MalM) YpsIP31758_0312 PF05638 Type VI secretion system effector, Hcp YpsIP31758_0322 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_0322 PF17871 AAA lid domain YpsIP31758_0322 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_0322 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_0328 PF04717 Type VI secretion system, phage-baseplate injector YpsIP31758_0330 PF03527 RHS protein YpsIP31758_0330 PF05593 RHS Repeat YpsIP31758_0330 PF14220 Domain of unknown function (DUF4329) YpsIP31758_0333 PF03527 RHS protein YpsIP31758_0333 PF05593 RHS Repeat YpsIP31758_0333 PF14220 Domain of unknown function (DUF4329) YpsIP31758_0339 PF04717 Type VI secretion system, phage-baseplate injector YpsIP31758_0341 PF05593 RHS Repeat YpsIP31758_0341 PF03527 RHS protein YpsIP31758_0345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YpsIP31758_0345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YpsIP31758_0347 PF12833 Helix-turn-helix domain YpsIP31758_0347 PF02311 AraC-like ligand binding domain YpsIP31758_0348 PF05025 RbsD / FucU transport protein family YpsIP31758_0349 PF00294 pfkB family carbohydrate kinase YpsIP31758_0352 PF03358 NADPH-dependent FMN reductase YpsIP31758_0353 PF09084 NMT1/THI5 like YpsIP31758_0354 PF00296 Luciferase-like monooxygenase YpsIP31758_0355 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0356 PF00005 ABC transporter YpsIP31758_0357 PF04221 RelB antitoxin YpsIP31758_0358 PF00860 Permease family YpsIP31758_0359 PF00999 Sodium/hydrogen exchanger family YpsIP31758_0361 PF03279 Bacterial lipid A biosynthesis acyltransferase YpsIP31758_0365 PF00005 ABC transporter YpsIP31758_0366 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_0368 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_0368 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YpsIP31758_0369 PF00571 CBS domain YpsIP31758_0369 PF01380 SIS domain YpsIP31758_0370 PF02798 Glutathione S-transferase, N-terminal domain YpsIP31758_0374 PF00313 'Cold-shock' DNA-binding domain YpsIP31758_0375 PF00313 'Cold-shock' DNA-binding domain YpsIP31758_0376 PF00313 'Cold-shock' DNA-binding domain YpsIP31758_0378 PF05433 Glycine zipper 2TM domain YpsIP31758_0379 PF00753 Metallo-beta-lactamase superfamily YpsIP31758_0380 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YpsIP31758_0380 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YpsIP31758_0381 PF02627 Carboxymuconolactone decarboxylase family YpsIP31758_0382 PF07690 Major Facilitator Superfamily YpsIP31758_0385 PF02954 Bacterial regulatory protein, Fis family YpsIP31758_0386 PF01207 Dihydrouridine synthase (Dus) YpsIP31758_0389 PF00474 Sodium:solute symporter family YpsIP31758_0390 PF06196 Protein of unknown function (DUF997) YpsIP31758_0391 PF02785 Biotin carboxylase C-terminal domain YpsIP31758_0391 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YpsIP31758_0391 PF00289 Biotin carboxylase, N-terminal domain YpsIP31758_0392 PF00364 Biotin-requiring enzyme YpsIP31758_0393 PF01220 Dehydroquinase class II YpsIP31758_0394 PF01794 Ferric reductase like transmembrane component YpsIP31758_0395 PF00174 Oxidoreductase molybdopterin binding domain YpsIP31758_0396 PF00107 Zinc-binding dehydrogenase YpsIP31758_0396 PF08240 Alcohol dehydrogenase GroES-like domain YpsIP31758_0397 PF00990 Diguanylate cyclase, GGDEF domain YpsIP31758_0397 PF00563 EAL domain YpsIP31758_0397 PF17157 Gammaproteobacterial periplasmic sensor domain YpsIP31758_0399 PF04085 rod shape-determining protein MreC YpsIP31758_0400 PF04093 rod shape-determining protein MreD YpsIP31758_0401 PF02545 Maf-like protein YpsIP31758_0402 PF00575 S1 RNA binding domain YpsIP31758_0402 PF10150 Ribonuclease E/G family YpsIP31758_0403 PF13502 AsmA-like C-terminal region YpsIP31758_0403 PF13116 Protein of unknown function YpsIP31758_0404 PF00795 Carbon-nitrogen hydrolase YpsIP31758_0405 PF01523 Putative modulator of DNA gyrase YpsIP31758_0406 PF18807 Tripartite Tc toxins repeat YpsIP31758_0406 PF05785 Rho-activating domain of cytotoxic necrotizing factor YpsIP31758_0407 PF18807 Tripartite Tc toxins repeat YpsIP31758_0407 PF05785 Rho-activating domain of cytotoxic necrotizing factor YpsIP31758_0408 PF05785 Rho-activating domain of cytotoxic necrotizing factor YpsIP31758_0408 PF18807 Tripartite Tc toxins repeat YpsIP31758_0409 PF05785 Rho-activating domain of cytotoxic necrotizing factor YpsIP31758_0409 PF18807 Tripartite Tc toxins repeat YpsIP31758_0414 PF12256 Insecticide toxin TcdB middle/N-terminal region YpsIP31758_0414 PF12255 Insecticide toxin TcdB middle/C-terminal region YpsIP31758_0414 PF03534 Salmonella virulence plasmid 65kDa B protein YpsIP31758_0415 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YpsIP31758_0415 PF18413 Neuraminidase-like domain YpsIP31758_0417 PF03466 LysR substrate binding domain YpsIP31758_0417 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0418 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0418 PF03466 LysR substrate binding domain YpsIP31758_0419 PF07869 Protein of unknown function (DUF1656) YpsIP31758_0420 PF13533 Biotin-lipoyl like YpsIP31758_0421 PF04632 Fusaric acid resistance protein family YpsIP31758_0422 PF00171 Aldehyde dehydrogenase family YpsIP31758_0424 PF01337 Barstar (barnase inhibitor) YpsIP31758_0425 PF04751 Protein of unknown function (DUF615) YpsIP31758_0426 PF01523 Putative modulator of DNA gyrase YpsIP31758_0428 PF07361 Cytochrome b562 YpsIP31758_0429 PF14760 Rnk N-terminus YpsIP31758_0429 PF01272 Transcription elongation factor, GreA/GreB, C-term YpsIP31758_0430 PF11941 Domain of unknown function (DUF3459) YpsIP31758_0430 PF00128 Alpha amylase, catalytic domain YpsIP31758_0431 PF02378 Phosphotransferase system, EIIC YpsIP31758_0431 PF00367 phosphotransferase system, EIIB YpsIP31758_0432 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_0434 PF01042 Endoribonuclease L-PSP YpsIP31758_0435 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YpsIP31758_0435 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YpsIP31758_0436 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YpsIP31758_0436 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YpsIP31758_0437 PF00381 PTS HPr component phosphorylation site YpsIP31758_0438 PF03668 P-loop ATPase protein family YpsIP31758_0439 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YpsIP31758_0440 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YpsIP31758_0441 PF00309 Sigma-54 factor, Activator interacting domain (AID) YpsIP31758_0441 PF04963 Sigma-54 factor, core binding domain YpsIP31758_0441 PF04552 Sigma-54, DNA binding domain YpsIP31758_0442 PF12399 Branched-chain amino acid ATP-binding cassette transporter YpsIP31758_0442 PF00005 ABC transporter YpsIP31758_0443 PF03968 OstA-like protein YpsIP31758_0444 PF06835 Lipopolysaccharide-assembly, LptC-related YpsIP31758_0446 PF00571 CBS domain YpsIP31758_0446 PF01380 SIS domain YpsIP31758_0447 PF01699 Sodium/calcium exchanger protein YpsIP31758_0448 PF00005 ABC transporter YpsIP31758_0449 PF02405 Permease MlaE YpsIP31758_0450 PF02470 MlaD protein YpsIP31758_0451 PF05494 MlaC protein YpsIP31758_0452 PF13466 STAS domain YpsIP31758_0453 PF01722 BolA-like protein YpsIP31758_0454 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YpsIP31758_0455 PF13180 PDZ domain YpsIP31758_0456 PF00595 PDZ domain YpsIP31758_0456 PF13180 PDZ domain YpsIP31758_0457 PF06295 Protein of unknown function (DUF1043) YpsIP31758_0458 PF03969 AFG1-like ATPase YpsIP31758_0459 PF00572 Ribosomal protein L13 YpsIP31758_0461 PF00380 Ribosomal protein S9/S16 YpsIP31758_0462 PF02798 Glutathione S-transferase, N-terminal domain YpsIP31758_0462 PF00043 Glutathione S-transferase, C-terminal domain YpsIP31758_0463 PF04386 Stringent starvation protein B YpsIP31758_0465 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_0465 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YpsIP31758_0466 PF01493 GXGXG motif YpsIP31758_0466 PF04898 Glutamate synthase central domain YpsIP31758_0466 PF01645 Conserved region in glutamate synthase YpsIP31758_0466 PF00310 Glutamine amidotransferases class-II YpsIP31758_0468 PF16199 Radical_SAM C-terminal domain YpsIP31758_0468 PF04055 Radical SAM superfamily YpsIP31758_0469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_0469 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_0469 PF18415 Histidine kinase receptor ArcB trans-membrane domain YpsIP31758_0469 PF01627 Hpt domain YpsIP31758_0469 PF00072 Response regulator receiver domain YpsIP31758_0469 PF00989 PAS fold YpsIP31758_0471 PF00912 Transglycosylase YpsIP31758_0472 PF04972 BON domain YpsIP31758_0473 PF13580 SIS domain YpsIP31758_0474 PF02021 Uncharacterised protein family UPF0102 YpsIP31758_0475 PF04348 LppC putative lipoprotein YpsIP31758_0476 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YpsIP31758_0477 PF17954 Quercetinase C-terminal cupin domain YpsIP31758_0477 PF02678 Pirin YpsIP31758_0478 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0478 PF03466 LysR substrate binding domain YpsIP31758_0479 PF13409 Glutathione S-transferase, N-terminal domain YpsIP31758_0480 PF07681 DoxX YpsIP31758_0482 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YpsIP31758_0483 PF05957 Bacterial protein of unknown function (DUF883) YpsIP31758_0486 PF13721 SecD export protein N-terminal TM region YpsIP31758_0487 PF09335 SNARE associated Golgi protein YpsIP31758_0489 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_0489 PF07729 FCD domain YpsIP31758_0490 PF07690 Major Facilitator Superfamily YpsIP31758_0491 PF02614 Glucuronate isomerase YpsIP31758_0492 PF01232 Mannitol dehydrogenase Rossmann domain YpsIP31758_0492 PF08125 Mannitol dehydrogenase C-terminal domain YpsIP31758_0493 PF08666 SAF domain YpsIP31758_0493 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YpsIP31758_0494 PF10688 Bacterial inner membrane protein YpsIP31758_0495 PF00375 Sodium:dicarboxylate symporter family YpsIP31758_0496 PF01797 Transposase IS200 like YpsIP31758_0497 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YpsIP31758_0498 PF01863 Protein of unknown function DUF45 YpsIP31758_0499 PF03797 Autotransporter beta-domain YpsIP31758_0500 PF05175 Methyltransferase small domain YpsIP31758_0501 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_0501 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YpsIP31758_0502 PF03729 Short repeat of unknown function (DUF308) YpsIP31758_0505 PF00092 von Willebrand factor type A domain YpsIP31758_0507 PF02342 TerD domain YpsIP31758_0508 PF00092 von Willebrand factor type A domain YpsIP31758_0509 PF08479 POTRA domain, ShlB-type YpsIP31758_0509 PF17287 POTRA domain YpsIP31758_0509 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YpsIP31758_0510 PF13332 Hemagglutinin repeat YpsIP31758_0510 PF05860 haemagglutination activity domain YpsIP31758_0510 PF04829 Pre-toxin domain with VENN motif YpsIP31758_0510 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_0514 PF04829 Pre-toxin domain with VENN motif YpsIP31758_0514 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_0514 PF05860 haemagglutination activity domain YpsIP31758_0514 PF13332 Hemagglutinin repeat YpsIP31758_0517 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_0517 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain YpsIP31758_0517 PF05594 Haemagluttinin repeat YpsIP31758_0517 PF13332 Hemagglutinin repeat YpsIP31758_0517 PF05860 haemagglutination activity domain YpsIP31758_0518 PF04829 Pre-toxin domain with VENN motif YpsIP31758_0518 PF13332 Hemagglutinin repeat YpsIP31758_0519 PF04829 Pre-toxin domain with VENN motif YpsIP31758_0519 PF05860 haemagglutination activity domain YpsIP31758_0519 PF13332 Hemagglutinin repeat YpsIP31758_0519 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_0521 PF05860 haemagglutination activity domain YpsIP31758_0521 PF04829 Pre-toxin domain with VENN motif YpsIP31758_0521 PF13332 Hemagglutinin repeat YpsIP31758_0521 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_0525 PF00005 ABC transporter YpsIP31758_0525 PF17912 MalK OB fold domain YpsIP31758_0525 PF03459 TOBE domain YpsIP31758_0526 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YpsIP31758_0527 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_0528 PF13416 Bacterial extracellular solute-binding protein YpsIP31758_0529 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0530 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0532 PF00933 Glycosyl hydrolase family 3 N terminal domain YpsIP31758_0532 PF01915 Glycosyl hydrolase family 3 C-terminal domain YpsIP31758_0532 PF14310 Fibronectin type III-like domain YpsIP31758_0534 PF04632 Fusaric acid resistance protein family YpsIP31758_0535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_0535 PF00529 HlyD membrane-fusion protein of T1SS YpsIP31758_0542 PF01042 Endoribonuclease L-PSP YpsIP31758_0547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0547 PF03466 LysR substrate binding domain YpsIP31758_0549 PF05638 Type VI secretion system effector, Hcp YpsIP31758_0553 PF03979 Sigma-70 factor, region 1.1 YpsIP31758_0553 PF04546 Sigma-70, non-essential region YpsIP31758_0553 PF04542 Sigma-70 region 2 YpsIP31758_0553 PF00140 Sigma-70 factor, region 1.2 YpsIP31758_0553 PF04545 Sigma-70, region 4 YpsIP31758_0553 PF04539 Sigma-70 region 3 YpsIP31758_0554 PF08275 DNA primase catalytic core, N-terminal domain YpsIP31758_0554 PF08278 DNA primase DnaG DnaB-binding YpsIP31758_0554 PF01807 CHC2 zinc finger YpsIP31758_0554 PF10410 DnaB-helicase binding domain of primase YpsIP31758_0555 PF01165 Ribosomal protein S21 YpsIP31758_0556 PF00814 Glycoprotease family YpsIP31758_0557 PF02660 Glycerol-3-phosphate acyltransferase YpsIP31758_0558 PF02152 Dihydroneopterin aldolase YpsIP31758_0559 PF02673 Bacitracin resistance protein BacA YpsIP31758_0560 PF01966 HD domain YpsIP31758_0560 PF01743 Poly A polymerase head domain YpsIP31758_0560 PF12627 Probable RNA and SrmB- binding site of polymerase A YpsIP31758_0561 PF08239 Bacterial SH3 domain YpsIP31758_0562 PF01928 CYTH domain YpsIP31758_0563 PF08335 GlnD PII-uridylyltransferase YpsIP31758_0563 PF03710 Glutamate-ammonia ligase adenylyltransferase YpsIP31758_0564 PF00294 pfkB family carbohydrate kinase YpsIP31758_0564 PF01467 Cytidylyltransferase-like YpsIP31758_0565 PF13520 Amino acid permease YpsIP31758_0566 PF04380 Membrane fusogenic activity YpsIP31758_0567 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YpsIP31758_0570 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YpsIP31758_0571 PF03738 Glutathionylspermidine synthase preATP-grasp YpsIP31758_0572 PF06693 Protein of unknown function (DUF1190) YpsIP31758_0573 PF02321 Outer membrane efflux protein YpsIP31758_0574 PF00293 NUDIX domain YpsIP31758_0575 PF06853 Protein of unknown function (DUF1249) YpsIP31758_0576 PF00149 Calcineurin-like phosphoesterase YpsIP31758_0577 PF05728 Uncharacterised protein family (UPF0227) YpsIP31758_0578 PF00204 DNA gyrase B YpsIP31758_0578 PF00986 DNA gyrase B subunit, carboxyl terminus YpsIP31758_0578 PF01751 Toprim domain YpsIP31758_0578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_0579 PF03466 LysR substrate binding domain YpsIP31758_0579 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0580 PF02525 Flavodoxin-like fold YpsIP31758_0581 PF03989 DNA gyrase C-terminal domain, beta-propeller YpsIP31758_0581 PF00521 DNA gyrase/topoisomerase IV, subunit A YpsIP31758_0582 PF01553 Acyltransferase YpsIP31758_0583 PF07732 Multicopper oxidase YpsIP31758_0583 PF07731 Multicopper oxidase YpsIP31758_0585 PF11842 Domain of unknown function (DUF3362) YpsIP31758_0585 PF04055 Radical SAM superfamily YpsIP31758_0585 PF08497 Radical SAM N-terminal YpsIP31758_0586 PF00248 Aldo/keto reductase family YpsIP31758_0587 PF00465 Iron-containing alcohol dehydrogenase YpsIP31758_0588 PF12833 Helix-turn-helix domain YpsIP31758_0588 PF06719 AraC-type transcriptional regulator N-terminus YpsIP31758_0589 PF09335 SNARE associated Golgi protein YpsIP31758_0590 PF01053 Cys/Met metabolism PLP-dependent enzyme YpsIP31758_0591 PF01618 MotA/TolQ/ExbB proton channel family YpsIP31758_0592 PF02472 Biopolymer transport protein ExbD/TolR YpsIP31758_0599 PF00437 Type II/IV secretion system protein YpsIP31758_0601 PF13629 Pilus formation protein N terminal region YpsIP31758_0601 PF00263 Bacterial type II and III secretion system protein YpsIP31758_0601 PF04972 BON domain YpsIP31758_0608 PF02369 Bacterial Ig-like domain (group 1) YpsIP31758_0608 PF11924 Inverse autotransporter, beta-domain YpsIP31758_0608 PF07979 Intimin C-type lectin domain YpsIP31758_0608 PF09134 Invasin, domain 3 YpsIP31758_0610 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YpsIP31758_0610 PF18416 N-acetylglucosamine binding protein domain 2 YpsIP31758_0611 PF00704 Glycosyl hydrolases family 18 YpsIP31758_0613 PF00419 Fimbrial protein YpsIP31758_0614 PF00577 Outer membrane usher protein YpsIP31758_0614 PF13953 PapC C-terminal domain YpsIP31758_0614 PF13954 PapC N-terminal domain YpsIP31758_0615 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_0615 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_0616 PF09222 Fimbrial adhesin F17-AG, lectin domain YpsIP31758_0616 PF00419 Fimbrial protein YpsIP31758_0617 PF01497 Periplasmic binding protein YpsIP31758_0622 PF00771 FHIPEP family YpsIP31758_0623 PF01312 FlhB HrpN YscU SpaS Family YpsIP31758_0624 PF01311 Bacterial export proteins, family 1 YpsIP31758_0625 PF01313 Bacterial export proteins, family 3 YpsIP31758_0626 PF00813 FliP family YpsIP31758_0627 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YpsIP31758_0629 PF00158 Sigma-54 interaction domain YpsIP31758_0629 PF00072 Response regulator receiver domain YpsIP31758_0629 PF02954 Bacterial regulatory protein, Fis family YpsIP31758_0630 PF02049 Flagellar hook-basal body complex protein FliE YpsIP31758_0631 PF01514 Secretory protein of YscJ/FliF family YpsIP31758_0631 PF08345 Flagellar M-ring protein C-terminal YpsIP31758_0634 PF18269 T3SS EscN ATPase C-terminal domain YpsIP31758_0634 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YpsIP31758_0638 PF13144 Chaperone for flagella basal body P-ring formation YpsIP31758_0639 PF00460 Flagella basal body rod protein YpsIP31758_0640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_0640 PF00460 Flagella basal body rod protein YpsIP31758_0641 PF03963 Flagellar hook capping protein - N-terminal region YpsIP31758_0641 PF13861 FlgD Tudor-like domain YpsIP31758_0641 PF13860 FlgD Ig-like domain YpsIP31758_0642 PF00460 Flagella basal body rod protein YpsIP31758_0642 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_0642 PF07559 Flagellar basal body protein FlaE YpsIP31758_0643 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_0643 PF00460 Flagella basal body rod protein YpsIP31758_0644 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_0644 PF00460 Flagella basal body rod protein YpsIP31758_0645 PF02107 Flagellar L-ring protein YpsIP31758_0646 PF02119 Flagellar P-ring protein YpsIP31758_0648 PF00460 Flagella basal body rod protein YpsIP31758_0648 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_0652 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_0652 PF18500 CadC C-terminal domain 1 YpsIP31758_0653 PF07196 Flagellin hook IN motif YpsIP31758_0653 PF00700 Bacterial flagellin C-terminal helical region YpsIP31758_0653 PF00669 Bacterial flagellin N-terminal helical region YpsIP31758_0654 PF07196 Flagellin hook IN motif YpsIP31758_0654 PF00700 Bacterial flagellin C-terminal helical region YpsIP31758_0654 PF00669 Bacterial flagellin N-terminal helical region YpsIP31758_0655 PF07196 Flagellin hook IN motif YpsIP31758_0655 PF07195 Flagellar hook-associated protein 2 C-terminus YpsIP31758_0655 PF02465 Flagellar hook-associated protein 2 N-terminus YpsIP31758_0660 PF04545 Sigma-70, region 4 YpsIP31758_0660 PF04542 Sigma-70 region 2 YpsIP31758_0661 PF01618 MotA/TolQ/ExbB proton channel family YpsIP31758_0662 PF13677 Membrane MotB of proton-channel complex MotA/MotB YpsIP31758_0662 PF00691 OmpA family YpsIP31758_0665 PF05433 Glycine zipper 2TM domain YpsIP31758_0666 PF00990 Diguanylate cyclase, GGDEF domain YpsIP31758_0666 PF00563 EAL domain YpsIP31758_0666 PF13188 PAS domain YpsIP31758_0666 PF03707 Bacterial signalling protein N terminal repeat YpsIP31758_0667 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_0667 PF00529 HlyD membrane-fusion protein of T1SS YpsIP31758_0668 PF00873 AcrB/AcrD/AcrF family YpsIP31758_0671 PF07906 ShET2 enterotoxin, N-terminal region YpsIP31758_0673 PF03797 Autotransporter beta-domain YpsIP31758_0675 PF14496 C-terminal novel E3 ligase, LRR-interacting YpsIP31758_0675 PF12468 Type III secretion system leucine rich repeat protein YpsIP31758_0675 PF14496 C-terminal novel E3 ligase, LRR-interacting YpsIP31758_0675 PF12468 Type III secretion system leucine rich repeat protein YpsIP31758_0676 PF12468 Type III secretion system leucine rich repeat protein YpsIP31758_0676 PF14496 C-terminal novel E3 ligase, LRR-interacting YpsIP31758_0678 PF03806 AbgT putative transporter family YpsIP31758_0680 PF07687 Peptidase dimerisation domain YpsIP31758_0680 PF01546 Peptidase family M20/M25/M40 YpsIP31758_0681 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_0681 PF00593 TonB dependent receptor YpsIP31758_0683 PF00550 Phosphopantetheine attachment site YpsIP31758_0683 PF08242 Methyltransferase domain YpsIP31758_0683 PF00501 AMP-binding enzyme YpsIP31758_0683 PF00668 Condensation domain YpsIP31758_0684 PF08242 Methyltransferase domain YpsIP31758_0684 PF00550 Phosphopantetheine attachment site YpsIP31758_0684 PF00668 Condensation domain YpsIP31758_0684 PF00501 AMP-binding enzyme YpsIP31758_0687 PF00975 Thioesterase domain YpsIP31758_0689 PF08021 Siderophore-interacting FAD-binding domain YpsIP31758_0689 PF04954 Siderophore-interacting protein YpsIP31758_0689 PF00664 ABC transporter transmembrane region YpsIP31758_0689 PF00005 ABC transporter YpsIP31758_0690 PF00664 ABC transporter transmembrane region YpsIP31758_0690 PF00005 ABC transporter YpsIP31758_0693 PF02447 GntP family permease YpsIP31758_0694 PF12951 Passenger-associated-transport-repeat YpsIP31758_0695 PF12951 Passenger-associated-transport-repeat YpsIP31758_0696 PF04717 Type VI secretion system, phage-baseplate injector YpsIP31758_0698 PF05593 RHS Repeat YpsIP31758_0698 PF03527 RHS protein YpsIP31758_0706 PF00939 Sodium:sulfate symporter transmembrane region YpsIP31758_0707 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_0710 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_0710 PF00593 TonB dependent receptor YpsIP31758_0711 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YpsIP31758_0712 PF06276 Ferric iron reductase FhuF-like transporter YpsIP31758_0712 PF04183 IucA / IucC family YpsIP31758_0714 PF06276 Ferric iron reductase FhuF-like transporter YpsIP31758_0714 PF04183 IucA / IucC family YpsIP31758_0719 PF00765 Autoinducer synthase YpsIP31758_0720 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_0720 PF03472 Autoinducer binding domain YpsIP31758_0721 PF02517 CPBP intramembrane metalloprotease YpsIP31758_0724 PF03811 InsA N-terminal domain YpsIP31758_0724 PF12759 InsA C-terminal domain YpsIP31758_0730 PF00691 OmpA family YpsIP31758_0730 PF05736 OprF membrane domain YpsIP31758_0732 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_0732 PF17871 AAA lid domain YpsIP31758_0732 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_0732 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_0735 PF03811 InsA N-terminal domain YpsIP31758_0735 PF12759 InsA C-terminal domain YpsIP31758_0740 PF12759 InsA C-terminal domain YpsIP31758_0740 PF03811 InsA N-terminal domain YpsIP31758_0741 PF03400 IS1 transposase YpsIP31758_0743 PF02899 Phage integrase, N-terminal SAM-like domain YpsIP31758_0743 PF00589 Phage integrase family YpsIP31758_0747 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YpsIP31758_0748 PF06755 CbtA_toxin of type IV toxin-antitoxin system YpsIP31758_0750 PF04002 RadC-like JAB domain YpsIP31758_0752 PF03230 Antirestriction protein YpsIP31758_0754 PF06067 Domain of unknown function (DUF932) YpsIP31758_0758 PF13280 WYL domain YpsIP31758_0758 PF08220 DeoR-like helix-turn-helix domain YpsIP31758_0759 PF01926 50S ribosome-binding GTPase YpsIP31758_0769 PF13592 Winged helix-turn helix YpsIP31758_0769 PF13358 DDE superfamily endonuclease YpsIP31758_0774 PF04391 Protein of unknown function (DUF533) YpsIP31758_0781 PF13488 Glycine zipper YpsIP31758_0781 PF00691 OmpA family YpsIP31758_0808 PF13195 Protein of unknown function (DUF4011) YpsIP31758_0808 PF13086 AAA domain YpsIP31758_0808 PF13087 AAA domain YpsIP31758_0808 PF13087 AAA domain YpsIP31758_0808 PF13086 AAA domain YpsIP31758_0808 PF13195 Protein of unknown function (DUF4011) YpsIP31758_0809 PF00589 Phage integrase family YpsIP31758_0809 PF13356 Arm DNA-binding domain YpsIP31758_0811 PF01276 Orn/Lys/Arg decarboxylase, major domain YpsIP31758_0811 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YpsIP31758_0811 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YpsIP31758_0812 PF13407 Periplasmic binding protein domain YpsIP31758_0813 PF00005 ABC transporter YpsIP31758_0814 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_0815 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_0817 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YpsIP31758_0817 PF01464 Transglycosylase SLT domain YpsIP31758_0818 PF04362 Bacterial Fe(2+) trafficking YpsIP31758_0819 PF14815 NUDIX domain YpsIP31758_0819 PF00633 Helix-hairpin-helix motif YpsIP31758_0819 PF00730 HhH-GPD superfamily base excision DNA repair protein YpsIP31758_0819 PF10576 Iron-sulfur binding domain of endonuclease III YpsIP31758_0820 PF02390 Putative methyltransferase YpsIP31758_0821 PF04320 Protein with unknown function (DUF469) YpsIP31758_0822 PF04960 Glutaminase YpsIP31758_0823 PF11101 Protein of unknown function (DUF2884) YpsIP31758_0824 PF16671 Actin cross-linking domain YpsIP31758_0824 PF07634 RtxA repeat YpsIP31758_0824 PF11647 Membrane Localization Domain YpsIP31758_0824 PF12146 Serine aminopeptidase, S33 YpsIP31758_0824 PF11713 Peptidase C80 family YpsIP31758_0825 PF06969 HemN C-terminal domain YpsIP31758_0825 PF04055 Radical SAM superfamily YpsIP31758_0826 PF01725 Ham1 family YpsIP31758_0827 PF02594 Uncharacterised ACR, YggU family COG1872 YpsIP31758_0828 PF02325 YGGT family YpsIP31758_0829 PF14748 Pyrroline-5-carboxylate reductase dimerisation YpsIP31758_0829 PF03807 NADP oxidoreductase coenzyme F420-dependent YpsIP31758_0830 PF01168 Alanine racemase, N-terminal domain YpsIP31758_0831 PF00437 Type II/IV secretion system protein YpsIP31758_0832 PF04371 Porphyromonas-type peptidyl-arginine deiminase YpsIP31758_0833 PF00795 Carbon-nitrogen hydrolase YpsIP31758_0834 PF03652 Holliday junction resolvase YpsIP31758_0835 PF02622 Uncharacterized ACR, COG1678 YpsIP31758_0836 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YpsIP31758_0836 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YpsIP31758_0837 PF04452 RNA methyltransferase YpsIP31758_0839 PF04231 Endonuclease I YpsIP31758_0840 PF17283 SprT-like zinc ribbon domain YpsIP31758_0840 PF10263 SprT-like family YpsIP31758_0841 PF02773 S-adenosylmethionine synthetase, C-terminal domain YpsIP31758_0841 PF02772 S-adenosylmethionine synthetase, central domain YpsIP31758_0841 PF00438 S-adenosylmethionine synthetase, N-terminal domain YpsIP31758_0843 PF17810 Arginine decarboxylase helical bundle domain YpsIP31758_0843 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YpsIP31758_0843 PF17944 Arginine decarboxylase C-terminal helical extension YpsIP31758_0844 PF00355 Rieske [2Fe-2S] domain YpsIP31758_0845 PF01435 Peptidase family M48 YpsIP31758_0847 PF02779 Transketolase, pyrimidine binding domain YpsIP31758_0847 PF02780 Transketolase, C-terminal domain YpsIP31758_0847 PF00456 Transketolase, thiamine diphosphate binding domain YpsIP31758_0848 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YpsIP31758_0848 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YpsIP31758_0849 PF00162 Phosphoglycerate kinase YpsIP31758_0850 PF01116 Fructose-bisphosphate aldolase class-II YpsIP31758_0851 PF00924 Mechanosensitive ion channel YpsIP31758_0851 PF05552 Conserved TM helix YpsIP31758_0852 PF01810 LysE type translocator YpsIP31758_0853 PF04402 Protein of unknown function (DUF541) YpsIP31758_0854 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0854 PF03466 LysR substrate binding domain YpsIP31758_0855 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YpsIP31758_0856 PF01842 ACT domain YpsIP31758_0856 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YpsIP31758_0856 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YpsIP31758_0857 PF01812 5-formyltetrahydrofolate cyclo-ligase family YpsIP31758_0858 PF05164 Cell division protein ZapA YpsIP31758_0859 PF03695 Uncharacterised protein family (UPF0149) YpsIP31758_0860 PF05195 Aminopeptidase P, N-terminal domain YpsIP31758_0860 PF00557 Metallopeptidase family M24 YpsIP31758_0861 PF01494 FAD binding domain YpsIP31758_0862 PF01494 FAD binding domain YpsIP31758_0863 PF08669 Glycine cleavage T-protein C-terminal barrel domain YpsIP31758_0863 PF01571 Aminomethyltransferase folate-binding domain YpsIP31758_0864 PF01597 Glycine cleavage H-protein YpsIP31758_0865 PF02347 Glycine cleavage system P-protein YpsIP31758_0868 PF05662 Coiled stalk of trimeric autotransporter adhesin YpsIP31758_0868 PF05658 Head domain of trimeric autotransporter adhesin YpsIP31758_0868 PF03895 YadA-like membrane anchor domain YpsIP31758_0868 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_0870 PF03006 Haemolysin-III related YpsIP31758_0872 PF01571 Aminomethyltransferase folate-binding domain YpsIP31758_0873 PF03937 Flavinator of succinate dehydrogenase YpsIP31758_0874 PF07254 Membrane-bound toxin component of toxin-antitoxin system YpsIP31758_0875 PF00072 Response regulator receiver domain YpsIP31758_0875 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_0876 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_0876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_0876 PF00672 HAMP domain YpsIP31758_0877 PF06123 Inner membrane protein CreD YpsIP31758_0878 PF00258 Flavodoxin YpsIP31758_0879 PF00589 Phage integrase family YpsIP31758_0879 PF02899 Phage integrase, N-terminal SAM-like domain YpsIP31758_0880 PF13098 Thioredoxin-like domain YpsIP31758_0880 PF10411 Disulfide bond isomerase protein N-terminus YpsIP31758_0881 PF01368 DHH family YpsIP31758_0881 PF02272 DHHA1 domain YpsIP31758_0881 PF17768 RecJ OB domain YpsIP31758_0883 PF00152 tRNA synthetases class II (D, K and N) YpsIP31758_0883 PF01336 OB-fold nucleic acid binding domain YpsIP31758_0884 PF13356 Arm DNA-binding domain YpsIP31758_0884 PF14659 Phage integrase, N-terminal SAM-like domain YpsIP31758_0884 PF00589 Phage integrase family YpsIP31758_0888 PF15723 Motility quorum-sensing regulator, toxin of MqsA YpsIP31758_0889 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YpsIP31758_0905 PF03551 Transcriptional regulator PadR-like family YpsIP31758_0906 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YpsIP31758_0909 PF13407 Periplasmic binding protein domain YpsIP31758_0911 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_0912 PF00005 ABC transporter YpsIP31758_0913 PF00005 ABC transporter YpsIP31758_0913 PF17912 MalK OB fold domain YpsIP31758_0914 PF13416 Bacterial extracellular solute-binding protein YpsIP31758_0915 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0916 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_0917 PF07745 Glycosyl hydrolase family 53 YpsIP31758_0918 PF08533 Beta-galactosidase C-terminal domain YpsIP31758_0918 PF08532 Beta-galactosidase trimerisation domain YpsIP31758_0918 PF02449 Beta-galactosidase YpsIP31758_0919 PF02378 Phosphotransferase system, EIIC YpsIP31758_0919 PF00367 phosphotransferase system, EIIB YpsIP31758_0920 PF02264 LamB porin YpsIP31758_0922 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_0924 PF16338 Domain of unknown function (DUF4968) YpsIP31758_0924 PF17137 Domain of unknown function (DUF5110) YpsIP31758_0924 PF13802 Galactose mutarotase-like YpsIP31758_0924 PF01055 Glycosyl hydrolases family 31 YpsIP31758_0926 PF07690 Major Facilitator Superfamily YpsIP31758_0927 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_0929 PF01116 Fructose-bisphosphate aldolase class-II YpsIP31758_0931 PF00884 Sulfatase YpsIP31758_0932 PF04055 Radical SAM superfamily YpsIP31758_0932 PF13186 Iron-sulfur cluster-binding domain YpsIP31758_0936 PF01979 Amidohydrolase family YpsIP31758_0937 PF03610 PTS system fructose IIA component YpsIP31758_0938 PF03613 PTS system mannose/fructose/sorbose family IID component YpsIP31758_0939 PF03609 PTS system sorbose-specific iic component YpsIP31758_0940 PF03830 PTS system sorbose subfamily IIB component YpsIP31758_0941 PF01380 SIS domain YpsIP31758_0942 PF08013 Tagatose 6 phosphate kinase YpsIP31758_0943 PF00455 DeoR C terminal sensor domain YpsIP31758_0943 PF08220 DeoR-like helix-turn-helix domain YpsIP31758_0945 PF00884 Sulfatase YpsIP31758_0946 PF02278 Polysaccharide lyase family 8, super-sandwich domain YpsIP31758_0946 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YpsIP31758_0946 PF09093 Lyase, catalytic YpsIP31758_0946 PF09092 Lyase, N terminal YpsIP31758_0950 PF00484 Carbonic anhydrase YpsIP31758_0953 PF03958 Bacterial type II/III secretion system short domain YpsIP31758_0953 PF00263 Bacterial type II and III secretion system protein YpsIP31758_0955 PF00482 Type II secretion system (T2SS), protein F YpsIP31758_0956 PF08334 Type II secretion system (T2SS), protein G YpsIP31758_0956 PF07963 Prokaryotic N-terminal methylation motif YpsIP31758_0957 PF07963 Prokaryotic N-terminal methylation motif YpsIP31758_0957 PF02501 Type II secretion system (T2SS), protein I YpsIP31758_0963 PF01478 Type IV leader peptidase family YpsIP31758_0963 PF06750 Bacterial Peptidase A24 N-terminal domain YpsIP31758_0967 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YpsIP31758_0967 PF00672 HAMP domain YpsIP31758_0967 PF02203 Tar ligand binding domain homologue YpsIP31758_0969 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0969 PF03466 LysR substrate binding domain YpsIP31758_0970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0970 PF03466 LysR substrate binding domain YpsIP31758_0971 PF07690 Major Facilitator Superfamily YpsIP31758_0972 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_0973 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YpsIP31758_0973 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YpsIP31758_0974 PF00384 Molybdopterin oxidoreductase YpsIP31758_0974 PF01568 Molydopterin dinucleotide binding domain YpsIP31758_0975 PF00501 AMP-binding enzyme YpsIP31758_0975 PF01553 Acyltransferase YpsIP31758_0975 PF13193 AMP-binding enzyme C-terminal domain YpsIP31758_0976 PF07690 Major Facilitator Superfamily YpsIP31758_0979 PF00248 Aldo/keto reductase family YpsIP31758_0980 PF02976 DNA mismatch repair enzyme MutH YpsIP31758_0981 PF00293 NUDIX domain YpsIP31758_0982 PF05524 PEP-utilising enzyme, N-terminal YpsIP31758_0982 PF00391 PEP-utilising enzyme, mobile domain YpsIP31758_0982 PF02896 PEP-utilising enzyme, TIM barrel domain YpsIP31758_0982 PF01590 GAF domain YpsIP31758_0983 PF01790 Prolipoprotein diacylglyceryl transferase YpsIP31758_0984 PF00303 Thymidylate synthase YpsIP31758_0989 PF17946 RecC C-terminal domain YpsIP31758_0990 PF16187 Middle or third domain of peptidase_M16 YpsIP31758_0990 PF05193 Peptidase M16 inactive domain YpsIP31758_0990 PF00675 Insulinase (Peptidase family M16) YpsIP31758_0991 PF12705 PD-(D/E)XK nuclease superfamily YpsIP31758_0991 PF00580 UvrD/REP helicase N-terminal domain YpsIP31758_0991 PF13361 UvrD-like helicase C-terminal domain YpsIP31758_0992 PF13538 UvrD-like helicase C-terminal domain YpsIP31758_0993 PF00696 Amino acid kinase family YpsIP31758_0993 PF00583 Acetyltransferase (GNAT) family YpsIP31758_0994 PF01520 N-acetylmuramoyl-L-alanine amidase YpsIP31758_0994 PF11741 AMIN domain YpsIP31758_0995 PF06725 3D domain YpsIP31758_0995 PF03562 MltA specific insert domain YpsIP31758_0996 PF00899 ThiF family YpsIP31758_0997 PF02657 Fe-S metabolism associated domain YpsIP31758_0998 PF00266 Aminotransferase class-V YpsIP31758_0999 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_0999 PF03466 LysR substrate binding domain YpsIP31758_1000 PF04241 Protein of unknown function (DUF423) YpsIP31758_1001 PF18125 RlmM ferredoxin-like domain YpsIP31758_1001 PF01728 FtsJ-like methyltransferase YpsIP31758_1002 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YpsIP31758_1002 PF01367 5'-3' exonuclease, C-terminal SAM fold YpsIP31758_1003 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YpsIP31758_1003 PF03641 Possible lysine decarboxylase YpsIP31758_1003 PF11892 Domain of unknown function (DUF3412) YpsIP31758_1004 PF14489 QueF-like protein YpsIP31758_1004 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YpsIP31758_1005 PF07348 Syd protein (SUKH-2) YpsIP31758_1006 PF04287 tRNA pseudouridine synthase C YpsIP31758_1007 PF00849 RNA pseudouridylate synthase YpsIP31758_1008 PF00258 Flavodoxin YpsIP31758_1009 PF11944 Protein of unknown function (DUF3461) YpsIP31758_1010 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YpsIP31758_1010 PF00132 Bacterial transferase hexapeptide (six repeats) YpsIP31758_1010 PF14602 Hexapeptide repeat of succinyl-transferase YpsIP31758_1011 PF01842 ACT domain YpsIP31758_1011 PF08335 GlnD PII-uridylyltransferase YpsIP31758_1011 PF01909 Nucleotidyltransferase domain YpsIP31758_1011 PF01966 HD domain YpsIP31758_1012 PF00557 Metallopeptidase family M24 YpsIP31758_1013 PF00318 Ribosomal protein S2 YpsIP31758_1014 PF00889 Elongation factor TS YpsIP31758_1015 PF00696 Amino acid kinase family YpsIP31758_1016 PF01765 Ribosome recycling factor YpsIP31758_1017 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YpsIP31758_1017 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YpsIP31758_1017 PF13288 DXP reductoisomerase C-terminal domain YpsIP31758_1018 PF01255 Putative undecaprenyl diphosphate synthase YpsIP31758_1020 PF17820 PDZ domain YpsIP31758_1020 PF02163 Peptidase family M50 YpsIP31758_1021 PF01103 Surface antigen YpsIP31758_1021 PF07244 Surface antigen variable number repeat YpsIP31758_1022 PF03938 Outer membrane protein (OmpH-like) YpsIP31758_1023 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YpsIP31758_1023 PF00132 Bacterial transferase hexapeptide (six repeats) YpsIP31758_1024 PF07977 FabA-like domain YpsIP31758_1025 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YpsIP31758_1025 PF00132 Bacterial transferase hexapeptide (six repeats) YpsIP31758_1026 PF02684 Lipid-A-disaccharide synthetase YpsIP31758_1027 PF01351 Ribonuclease HII YpsIP31758_1028 PF14579 Helix-hairpin-helix motif YpsIP31758_1028 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YpsIP31758_1028 PF01336 OB-fold nucleic acid binding domain YpsIP31758_1028 PF02811 PHP domain YpsIP31758_1028 PF07733 Bacterial DNA polymerase III alpha NTPase domain YpsIP31758_1029 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YpsIP31758_1030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YpsIP31758_1031 PF01171 PP-loop family YpsIP31758_1031 PF09179 TilS substrate binding domain YpsIP31758_1031 PF11734 TilS substrate C-terminal domain YpsIP31758_1032 PF00034 Cytochrome c YpsIP31758_1033 PF07073 Modulator of Rho-dependent transcription termination (ROF) YpsIP31758_1034 PF06786 Uncharacterised protein family (UPF0253) YpsIP31758_1035 PF07152 YaeQ protein YpsIP31758_1036 PF00472 RF-1 domain YpsIP31758_1037 PF17185 NlpE C-terminal OB domain YpsIP31758_1037 PF04170 NlpE N-terminal domain YpsIP31758_1038 PF03129 Anticodon binding domain YpsIP31758_1038 PF04073 Aminoacyl-tRNA editing domain YpsIP31758_1038 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YpsIP31758_1039 PF01980 tRNA-methyltransferase O YpsIP31758_1039 PF18389 TrmO C-terminal domain YpsIP31758_1040 PF16358 RcsF lipoprotein YpsIP31758_1041 PF03180 NLPA lipoprotein YpsIP31758_1042 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1043 PF00005 ABC transporter YpsIP31758_1043 PF09383 NIL domain YpsIP31758_1048 PF00248 Aldo/keto reductase family YpsIP31758_1050 PF03372 Endonuclease/Exonuclease/phosphatase family YpsIP31758_1051 PF01464 Transglycosylase SLT domain YpsIP31758_1051 PF01476 LysM domain YpsIP31758_1052 PF16123 Hydroxyacylglutathione hydrolase C-terminus YpsIP31758_1052 PF00753 Metallo-beta-lactamase superfamily YpsIP31758_1053 PF08241 Methyltransferase domain YpsIP31758_1054 PF00075 RNase H YpsIP31758_1055 PF00929 Exonuclease YpsIP31758_1056 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YpsIP31758_1059 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YpsIP31758_1060 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1061 PF00571 CBS domain YpsIP31758_1061 PF00005 ABC transporter YpsIP31758_1062 PF00268 Ribonucleotide reductase, small chain YpsIP31758_1063 PF08343 Ribonucleotide reductase N-terminal YpsIP31758_1063 PF00317 Ribonucleotide reductase, all-alpha domain YpsIP31758_1063 PF02867 Ribonucleotide reductase, barrel domain YpsIP31758_1064 PF07972 NrdI Flavodoxin like YpsIP31758_1066 PF06392 Acid shock protein repeat YpsIP31758_1067 PF09400 Protein of unknown function (DUF2002) YpsIP31758_1068 PF06711 Protein of unknown function (DUF1198) YpsIP31758_1070 PF00313 'Cold-shock' DNA-binding domain YpsIP31758_1071 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YpsIP31758_1072 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1073 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1073 PF12911 N-terminal TM domain of oligopeptide transport permease C YpsIP31758_1074 PF00005 ABC transporter YpsIP31758_1075 PF00005 ABC transporter YpsIP31758_1077 PF00547 Urease, gamma subunit YpsIP31758_1078 PF00699 Urease beta subunit YpsIP31758_1079 PF00449 Urease alpha-subunit, N-terminal domain YpsIP31758_1079 PF01979 Amidohydrolase family YpsIP31758_1080 PF02814 UreE urease accessory protein, N-terminal domain YpsIP31758_1080 PF05194 UreE urease accessory protein, C-terminal domain YpsIP31758_1081 PF01730 UreF YpsIP31758_1082 PF02492 CobW/HypB/UreG, nucleotide-binding domain YpsIP31758_1083 PF01774 UreD urease accessory protein YpsIP31758_1084 PF03253 Urea transporter YpsIP31758_1085 PF03824 High-affinity nickel-transport protein YpsIP31758_1086 PF06411 HdeA/HdeB family YpsIP31758_1087 PF07885 Ion channel YpsIP31758_1087 PF02254 TrkA-N domain YpsIP31758_1088 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YpsIP31758_1089 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YpsIP31758_1091 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YpsIP31758_1092 PF02378 Phosphotransferase system, EIIC YpsIP31758_1093 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YpsIP31758_1094 PF07883 Cupin domain YpsIP31758_1094 PF12833 Helix-turn-helix domain YpsIP31758_1095 PF04794 YdjC-like protein YpsIP31758_1098 PF03925 SeqA protein C-terminal domain YpsIP31758_1098 PF17206 SeqA protein N-terminal domain YpsIP31758_1099 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YpsIP31758_1099 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YpsIP31758_1099 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YpsIP31758_1099 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YpsIP31758_1102 PF00072 Response regulator receiver domain YpsIP31758_1102 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_1103 PF02702 Osmosensitive K+ channel His kinase sensor domain YpsIP31758_1103 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_1103 PF13493 Domain of unknown function (DUF4118) YpsIP31758_1103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_1103 PF13492 GAF domain YpsIP31758_1104 PF02669 K+-transporting ATPase, c chain YpsIP31758_1108 PF03814 Potassium-transporting ATPase A subunit YpsIP31758_1109 PF10725 Protein of unknown function (DUF2517) YpsIP31758_1111 PF08349 Protein of unknown function (DUF1722) YpsIP31758_1112 PF03441 FAD binding domain of DNA photolyase YpsIP31758_1112 PF00875 DNA photolyase YpsIP31758_1113 PF02112 cAMP phosphodiesterases class-II YpsIP31758_1114 PF01784 NIF3 (NGG1p interacting factor 3) YpsIP31758_1115 PF02682 Carboxyltransferase domain, subdomain C and D YpsIP31758_1116 PF02626 Carboxyltransferase domain, subdomain A and B YpsIP31758_1117 PF03746 LamB/YcsF family YpsIP31758_1120 PF01470 Pyroglutamyl peptidase YpsIP31758_1121 PF03167 Uracil DNA glycosylase superfamily YpsIP31758_1122 PF01228 Glycine radical YpsIP31758_1125 PF12796 Ankyrin repeats (3 copies) YpsIP31758_1126 PF00271 Helicase conserved C-terminal domain YpsIP31758_1126 PF00270 DEAD/DEAH box helicase YpsIP31758_1127 PF05175 Methyltransferase small domain YpsIP31758_1128 PF00890 FAD binding domain YpsIP31758_1128 PF02910 Fumarate reductase flavoprotein C-term YpsIP31758_1129 PF04542 Sigma-70 region 2 YpsIP31758_1129 PF08281 Sigma-70, region 4 YpsIP31758_1130 PF03872 Anti sigma-E protein RseA, N-terminal domain YpsIP31758_1130 PF03873 Anti sigma-E protein RseA, C-terminal domain YpsIP31758_1131 PF17188 MucB/RseB C-terminal domain YpsIP31758_1131 PF03888 MucB/RseB N-terminal domain YpsIP31758_1134 PF00009 Elongation factor Tu GTP binding domain YpsIP31758_1134 PF00679 Elongation factor G C-terminus YpsIP31758_1134 PF03144 Elongation factor Tu domain 2 YpsIP31758_1134 PF06421 GTP-binding protein LepA C-terminus YpsIP31758_1135 PF10502 Signal peptidase, peptidase S26 YpsIP31758_1136 PF14622 Ribonuclease-III-like YpsIP31758_1136 PF00035 Double-stranded RNA binding motif YpsIP31758_1137 PF01926 50S ribosome-binding GTPase YpsIP31758_1137 PF07650 KH domain YpsIP31758_1138 PF02565 Recombination protein O C terminal YpsIP31758_1138 PF11967 Recombination protein O N terminal YpsIP31758_1139 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YpsIP31758_1140 PF01648 4'-phosphopantetheinyl transferase superfamily YpsIP31758_1141 PF12838 4Fe-4S dicluster domain YpsIP31758_1142 PF01380 SIS domain YpsIP31758_1142 PF01418 Helix-turn-helix domain, rpiR family YpsIP31758_1143 PF01380 SIS domain YpsIP31758_1145 PF14437 MafB19-like deaminase YpsIP31758_1146 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_1146 PF01464 Transglycosylase SLT domain YpsIP31758_1147 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YpsIP31758_1147 PF02769 AIR synthase related protein, C-terminal domain YpsIP31758_1147 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YpsIP31758_1150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_1150 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_1151 PF13942 YfhG lipoprotein YpsIP31758_1152 PF00158 Sigma-54 interaction domain YpsIP31758_1152 PF00072 Response regulator receiver domain YpsIP31758_1154 PF02540 NAD synthase YpsIP31758_1154 PF00795 Carbon-nitrogen hydrolase YpsIP31758_1155 PF00543 Nitrogen regulatory protein P-II YpsIP31758_1156 PF14503 YhfZ C-terminal domain YpsIP31758_1156 PF14502 Helix-turn-helix domain YpsIP31758_1157 PF00970 Oxidoreductase FAD-binding domain YpsIP31758_1157 PF00175 Oxidoreductase NAD-binding domain YpsIP31758_1157 PF00042 Globin YpsIP31758_1158 PF00464 Serine hydroxymethyltransferase YpsIP31758_1160 PF13505 Outer membrane protein beta-barrel domain YpsIP31758_1161 PF00874 PRD domain YpsIP31758_1162 PF12832 MFS_1 like family YpsIP31758_1163 PF06226 Protein of unknown function (DUF1007) YpsIP31758_1164 PF03824 High-affinity nickel-transport protein YpsIP31758_1165 PF00459 Inositol monophosphatase family YpsIP31758_1166 PF00588 SpoU rRNA Methylase family YpsIP31758_1167 PF02082 Transcriptional regulator YpsIP31758_1168 PF00266 Aminotransferase class-V YpsIP31758_1169 PF01592 NifU-like N terminal domain YpsIP31758_1170 PF01521 Iron-sulphur cluster biosynthesis YpsIP31758_1171 PF00226 DnaJ domain YpsIP31758_1171 PF07743 HSCB C-terminal oligomerisation domain YpsIP31758_1172 PF00012 Hsp70 protein YpsIP31758_1173 PF00111 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_1174 PF04384 Iron-sulphur cluster assembly YpsIP31758_1175 PF00883 Cytosol aminopeptidase family, catalytic domain YpsIP31758_1175 PF12404 Peptidase YpsIP31758_1176 PF14581 SseB protein C-terminal domain YpsIP31758_1176 PF07179 SseB protein N-terminal domain YpsIP31758_1177 PF03212 Pertactin YpsIP31758_1177 PF03797 Autotransporter beta-domain YpsIP31758_1177 PF16168 Adhesin of bacterial autotransporter system, probable stalk YpsIP31758_1179 PF03212 Pertactin YpsIP31758_1179 PF16168 Adhesin of bacterial autotransporter system, probable stalk YpsIP31758_1179 PF03797 Autotransporter beta-domain YpsIP31758_1182 PF00334 Nucleoside diphosphate kinase YpsIP31758_1183 PF04055 Radical SAM superfamily YpsIP31758_1185 PF13464 Domain of unknown function (DUF4115) YpsIP31758_1186 PF04551 GcpE protein YpsIP31758_1187 PF03129 Anticodon binding domain YpsIP31758_1187 PF13393 Histidyl-tRNA synthetase YpsIP31758_1188 PF09976 Tetratricopeptide repeat-like domain YpsIP31758_1189 PF13360 PQQ-like domain YpsIP31758_1190 PF01926 50S ribosome-binding GTPase YpsIP31758_1190 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YpsIP31758_1192 PF07191 zinc-ribbons YpsIP31758_1193 PF13742 OB-fold nucleic acid binding domain YpsIP31758_1193 PF02601 Exonuclease VII, large subunit YpsIP31758_1194 PF00478 IMP dehydrogenase / GMP reductase domain YpsIP31758_1194 PF00571 CBS domain YpsIP31758_1196 PF00958 GMP synthase C terminal domain YpsIP31758_1196 PF00117 Glutamine amidotransferase class-I YpsIP31758_1196 PF02540 NAD synthase YpsIP31758_1198 PF05638 Type VI secretion system effector, Hcp YpsIP31758_1203 PF08543 Phosphomethylpyrimidine kinase YpsIP31758_1207 PF00781 Diacylglycerol kinase catalytic domain YpsIP31758_1209 PF07411 Domain of unknown function (DUF1508) YpsIP31758_1210 PF00072 Response regulator receiver domain YpsIP31758_1210 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_1211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_1211 PF00672 HAMP domain YpsIP31758_1211 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_1212 PF07690 Major Facilitator Superfamily YpsIP31758_1213 PF00873 AcrB/AcrD/AcrF family YpsIP31758_1214 PF00873 AcrB/AcrD/AcrF family YpsIP31758_1215 PF13533 Biotin-lipoyl like YpsIP31758_1216 PF00005 ABC transporter YpsIP31758_1216 PF08402 TOBE domain YpsIP31758_1217 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_1217 PF00155 Aminotransferase class I and II YpsIP31758_1218 PF00202 Aminotransferase class-III YpsIP31758_1220 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1221 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1223 PF00012 Hsp70 protein YpsIP31758_1224 PF00571 CBS domain YpsIP31758_1224 PF01769 Divalent cation transporter YpsIP31758_1224 PF03448 MgtE intracellular N domain YpsIP31758_1226 PF02541 Ppx/GppA phosphatase family YpsIP31758_1227 PF13090 Polyphosphate kinase C-terminal domain 2 YpsIP31758_1227 PF02503 Polyphosphate kinase middle domain YpsIP31758_1227 PF13089 Polyphosphate kinase N-terminal domain YpsIP31758_1227 PF17941 Polyphosphate kinase C-terminal domain 1 YpsIP31758_1228 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1229 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1230 PF00005 ABC transporter YpsIP31758_1232 PF13302 Acetyltransferase (GNAT) domain YpsIP31758_1233 PF00551 Formyl transferase YpsIP31758_1234 PF02769 AIR synthase related protein, C-terminal domain YpsIP31758_1234 PF00586 AIR synthase related protein, N-terminal domain YpsIP31758_1236 PF00860 Permease family YpsIP31758_1237 PF00308 Bacterial dnaA protein YpsIP31758_1238 PF03960 ArsC family YpsIP31758_1239 PF07720 Tetratricopeptide repeat YpsIP31758_1239 PF01435 Peptidase family M48 YpsIP31758_1240 PF01594 AI-2E family transporter YpsIP31758_1245 PF00578 AhpC/TSA family YpsIP31758_1246 PF01842 ACT domain YpsIP31758_1247 PF00701 Dihydrodipicolinate synthetase family YpsIP31758_1248 PF06804 NlpB/DapX lipoprotein YpsIP31758_1249 PF01259 SAICAR synthetase YpsIP31758_1250 PF04228 Putative neutral zinc metallopeptidase YpsIP31758_1251 PF04284 Protein of unknown function (DUF441) YpsIP31758_1252 PF17176 tRNA-binding domain YpsIP31758_1252 PF08351 Domain of unknown function (DUF1726) YpsIP31758_1252 PF13718 GNAT acetyltransferase 2 YpsIP31758_1252 PF05127 Helicase YpsIP31758_1253 PF13980 Uncharacterised protein family (UPF0370) YpsIP31758_1254 PF02557 D-alanyl-D-alanine carboxypeptidase YpsIP31758_1255 PF07687 Peptidase dimerisation domain YpsIP31758_1255 PF01546 Peptidase family M20/M25/M40 YpsIP31758_1256 PF03960 ArsC family YpsIP31758_1259 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1260 PF00005 ABC transporter YpsIP31758_1260 PF08402 TOBE domain YpsIP31758_1263 PF00884 Sulfatase YpsIP31758_1264 PF13186 Iron-sulfur cluster-binding domain YpsIP31758_1264 PF04055 Radical SAM superfamily YpsIP31758_1266 PF04307 LexA-binding, inner membrane-associated putative hydrolase YpsIP31758_1268 PF00873 AcrB/AcrD/AcrF family YpsIP31758_1270 PF00072 Response regulator receiver domain YpsIP31758_1270 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_1271 PF12800 4Fe-4S binding domain YpsIP31758_1271 PF00037 4Fe-4S binding domain YpsIP31758_1271 PF13187 4Fe-4S dicluster domain YpsIP31758_1272 PF03927 NapD protein YpsIP31758_1273 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YpsIP31758_1273 PF00384 Molybdopterin oxidoreductase YpsIP31758_1273 PF01568 Molydopterin dinucleotide binding domain YpsIP31758_1273 PF10518 TAT (twin-arginine translocation) pathway signal sequence YpsIP31758_1274 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YpsIP31758_1275 PF03264 NapC/NirT cytochrome c family, N-terminal region YpsIP31758_1276 PF00293 NUDIX domain YpsIP31758_1277 PF01515 Phosphate acetyl/butaryl transferase YpsIP31758_1277 PF00390 Malic enzyme, N-terminal domain YpsIP31758_1277 PF03949 Malic enzyme, NAD binding domain YpsIP31758_1279 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YpsIP31758_1280 PF01218 Coproporphyrinogen III oxidase YpsIP31758_1281 PF00583 Acetyltransferase (GNAT) family YpsIP31758_1286 PF00583 Acetyltransferase (GNAT) family YpsIP31758_1288 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_1288 PF03797 Autotransporter beta-domain YpsIP31758_1288 PF03212 Pertactin YpsIP31758_1288 PF16168 Adhesin of bacterial autotransporter system, probable stalk YpsIP31758_1289 PF04076 Bacterial OB fold (BOF) protein YpsIP31758_1290 PF06572 Protein of unknown function (DUF1131) YpsIP31758_1292 PF04261 Dyp-type peroxidase family YpsIP31758_1293 PF00701 Dihydrodipicolinate synthetase family YpsIP31758_1294 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YpsIP31758_1295 PF00480 ROK family YpsIP31758_1296 PF04074 YhcH/YjgK/YiaL YpsIP31758_1297 PF01380 SIS domain YpsIP31758_1297 PF01418 Helix-turn-helix domain, rpiR family YpsIP31758_1298 PF07690 Major Facilitator Superfamily YpsIP31758_1300 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1301 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1302 PF00005 ABC transporter YpsIP31758_1303 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_1304 PF00072 Response regulator receiver domain YpsIP31758_1304 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_1305 PF00672 HAMP domain YpsIP31758_1305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_1305 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_1307 PF00155 Aminotransferase class I and II YpsIP31758_1308 PF00557 Metallopeptidase family M24 YpsIP31758_1308 PF05195 Aminopeptidase P, N-terminal domain YpsIP31758_1309 PF00474 Sodium:solute symporter family YpsIP31758_1310 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_1310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YpsIP31758_1311 PF12704 MacB-like periplasmic core domain YpsIP31758_1311 PF02687 FtsX-like permease family YpsIP31758_1311 PF00005 ABC transporter YpsIP31758_1312 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_1313 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_1313 PF00072 Response regulator receiver domain YpsIP31758_1314 PF16527 Two-component sensor protein CpxA, periplasmic domain YpsIP31758_1314 PF00672 HAMP domain YpsIP31758_1314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_1314 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_1315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YpsIP31758_1316 PF00391 PEP-utilising enzyme, mobile domain YpsIP31758_1316 PF02896 PEP-utilising enzyme, TIM barrel domain YpsIP31758_1316 PF05524 PEP-utilising enzyme, N-terminal YpsIP31758_1317 PF00381 PTS HPr component phosphorylation site YpsIP31758_1318 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_1320 PF04354 ZipA, C-terminal FtsZ-binding domain YpsIP31758_1321 PF12826 Helix-hairpin-helix motif YpsIP31758_1321 PF03120 NAD-dependent DNA ligase OB-fold domain YpsIP31758_1321 PF01653 NAD-dependent DNA ligase adenylation domain YpsIP31758_1321 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YpsIP31758_1321 PF00533 BRCA1 C Terminus (BRCT) domain YpsIP31758_1322 PF12843 Putative quorum-sensing-regulated virulence factor YpsIP31758_1325 PF00749 tRNA synthetases class I (E and Q), catalytic domain YpsIP31758_1326 PF01773 Na+ dependent nucleoside transporter N-terminus YpsIP31758_1326 PF07670 Nucleoside recognition YpsIP31758_1326 PF07662 Na+ dependent nucleoside transporter C-terminus YpsIP31758_1327 PF01566 Natural resistance-associated macrophage protein YpsIP31758_1329 PF00248 Aldo/keto reductase family YpsIP31758_1330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1330 PF03466 LysR substrate binding domain YpsIP31758_1332 PF02685 Glucokinase YpsIP31758_1333 PF07350 Protein of unknown function (DUF1479) YpsIP31758_1334 PF00155 Aminotransferase class I and II YpsIP31758_1335 PF01292 Prokaryotic cytochrome b561 YpsIP31758_1337 PF03783 Curli production assembly/transport component CsgG YpsIP31758_1339 PF05643 Putative bacterial lipoprotein (DUF799) YpsIP31758_1341 PF02613 Nitrate reductase delta subunit YpsIP31758_1342 PF04976 DMSO reductase anchor subunit (DmsC) YpsIP31758_1343 PF13247 4Fe-4S dicluster domain YpsIP31758_1343 PF12800 4Fe-4S binding domain YpsIP31758_1344 PF00384 Molybdopterin oxidoreductase YpsIP31758_1344 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YpsIP31758_1344 PF01568 Molydopterin dinucleotide binding domain YpsIP31758_1346 PF05638 Type VI secretion system effector, Hcp YpsIP31758_1348 PF00005 ABC transporter YpsIP31758_1349 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1351 PF13406 Transglycosylase SLT domain YpsIP31758_1362 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_1362 PF17871 AAA lid domain YpsIP31758_1362 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_1362 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_1363 PF16970 Type-1 fimbrial protein, A YpsIP31758_1364 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_1364 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_1365 PF00577 Outer membrane usher protein YpsIP31758_1365 PF13954 PapC N-terminal domain YpsIP31758_1365 PF13953 PapC C-terminal domain YpsIP31758_1374 PF04717 Type VI secretion system, phage-baseplate injector YpsIP31758_1380 PF08274 PhnA Zinc-Ribbon YpsIP31758_1380 PF03831 PhnA domain YpsIP31758_1382 PF04011 LemA family YpsIP31758_1387 PF00005 ABC transporter YpsIP31758_1388 PF03379 CcmB protein YpsIP31758_1389 PF01578 Cytochrome C assembly protein YpsIP31758_1390 PF04995 Heme exporter protein D (CcmD) YpsIP31758_1391 PF03100 CcmE YpsIP31758_1392 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YpsIP31758_1392 PF01578 Cytochrome C assembly protein YpsIP31758_1393 PF08534 Redoxin YpsIP31758_1394 PF03918 Cytochrome C biogenesis protein YpsIP31758_1395 PF03918 Cytochrome C biogenesis protein YpsIP31758_1396 PF04333 MlaA lipoprotein YpsIP31758_1397 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YpsIP31758_1398 PF04175 Protein of unknown function (DUF406) YpsIP31758_1399 PF02803 Thiolase, C-terminal domain YpsIP31758_1399 PF00108 Thiolase, N-terminal domain YpsIP31758_1400 PF00378 Enoyl-CoA hydratase/isomerase YpsIP31758_1400 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YpsIP31758_1400 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YpsIP31758_1402 PF00300 Histidine phosphatase superfamily (branch 1) YpsIP31758_1403 PF01713 Smr domain YpsIP31758_1404 PF05175 Methyltransferase small domain YpsIP31758_1405 PF01264 Chorismate synthase YpsIP31758_1406 PF03411 Penicillin-insensitive murein endopeptidase YpsIP31758_1407 PF01925 Sulfite exporter TauE/SafE YpsIP31758_1408 PF04315 Elongation factor P hydroxylase YpsIP31758_1409 PF08891 YfcL protein YpsIP31758_1410 PF01266 FAD dependent oxidoreductase YpsIP31758_1410 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YpsIP31758_1411 PF02801 Beta-ketoacyl synthase, C-terminal domain YpsIP31758_1411 PF00109 Beta-ketoacyl synthase, N-terminal domain YpsIP31758_1412 PF01177 Asp/Glu/Hydantoin racemase YpsIP31758_1413 PF00419 Fimbrial protein YpsIP31758_1415 PF00892 EamA-like transporter family YpsIP31758_1418 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YpsIP31758_1418 PF11890 Domain of unknown function (DUF3410) YpsIP31758_1418 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YpsIP31758_1419 PF02774 Semialdehyde dehydrogenase, dimerisation domain YpsIP31758_1419 PF01118 Semialdehyde dehydrogenase, NAD binding domain YpsIP31758_1420 PF01416 tRNA pseudouridine synthase YpsIP31758_1421 PF09335 SNARE associated Golgi protein YpsIP31758_1422 PF17848 Acetyl-coA carboxylase zinc finger domain YpsIP31758_1422 PF01039 Carboxyl transferase domain YpsIP31758_1423 PF08245 Mur ligase middle domain YpsIP31758_1423 PF02875 Mur ligase family, glutamate ligase domain YpsIP31758_1424 PF05036 Sporulation related domain YpsIP31758_1425 PF02674 Colicin V production protein YpsIP31758_1426 PF00156 Phosphoribosyl transferase domain YpsIP31758_1427 PF02441 Flavoprotein YpsIP31758_1428 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_1429 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1430 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1431 PF00005 ABC transporter YpsIP31758_1432 PF08338 Domain of unknown function (DUF1731) YpsIP31758_1432 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_1434 PF12850 Calcineurin-like phosphoesterase superfamily domain YpsIP31758_1436 PF00293 NUDIX domain YpsIP31758_1437 PF03611 PTS system sugar-specific permease component YpsIP31758_1440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YpsIP31758_1441 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YpsIP31758_1441 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_1442 PF01515 Phosphate acetyl/butaryl transferase YpsIP31758_1442 PF07085 DRTGG domain YpsIP31758_1443 PF00871 Acetokinase family YpsIP31758_1444 PF04217 Protein of unknown function, DUF412 YpsIP31758_1445 PF03887 YfbU domain YpsIP31758_1446 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_1447 PF02080 TrkA-C domain YpsIP31758_1447 PF03600 Citrate transporter YpsIP31758_1450 PF00155 Aminotransferase class I and II YpsIP31758_1452 PF03466 LysR substrate binding domain YpsIP31758_1452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1454 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YpsIP31758_1455 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YpsIP31758_1456 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YpsIP31758_1456 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YpsIP31758_1458 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YpsIP31758_1458 PF10531 SLBB domain YpsIP31758_1458 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YpsIP31758_1459 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YpsIP31758_1459 PF00384 Molybdopterin oxidoreductase YpsIP31758_1459 PF01568 Molydopterin dinucleotide binding domain YpsIP31758_1459 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YpsIP31758_1460 PF00146 NADH dehydrogenase YpsIP31758_1461 PF12838 4Fe-4S dicluster domain YpsIP31758_1462 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YpsIP31758_1463 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YpsIP31758_1464 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YpsIP31758_1464 PF00361 Proton-conducting membrane transporter YpsIP31758_1465 PF00361 Proton-conducting membrane transporter YpsIP31758_1466 PF00361 Proton-conducting membrane transporter YpsIP31758_1468 PF04074 YhcH/YjgK/YiaL YpsIP31758_1469 PF01202 Shikimate kinase YpsIP31758_1470 PF00106 short chain dehydrogenase YpsIP31758_1473 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_1475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YpsIP31758_1475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YpsIP31758_1476 PF00920 Dehydratase family YpsIP31758_1479 PF05957 Bacterial protein of unknown function (DUF883) YpsIP31758_1481 PF00425 chorismate binding enzyme YpsIP31758_1482 PF16582 Middle domain of thiamine pyrophosphate YpsIP31758_1482 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YpsIP31758_1482 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YpsIP31758_1483 PF12697 Alpha/beta hydrolase family YpsIP31758_1484 PF00378 Enoyl-CoA hydratase/isomerase YpsIP31758_1485 PF13378 Enolase C-terminal domain-like YpsIP31758_1486 PF13193 AMP-binding enzyme C-terminal domain YpsIP31758_1486 PF00501 AMP-binding enzyme YpsIP31758_1487 PF02885 Glycosyl transferase family, helical bundle domain YpsIP31758_1488 PF07338 Protein of unknown function (DUF1471) YpsIP31758_1491 PF05971 RNA methyltransferase YpsIP31758_1492 PF13426 PAS domain YpsIP31758_1492 PF08447 PAS fold YpsIP31758_1492 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YpsIP31758_1493 PF00005 ABC transporter YpsIP31758_1494 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1495 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_1497 PF00210 Ferritin-like domain YpsIP31758_1498 PF13649 Methyltransferase domain YpsIP31758_1500 PF00892 EamA-like transporter family YpsIP31758_1501 PF13505 Outer membrane protein beta-barrel domain YpsIP31758_1506 PF00107 Zinc-binding dehydrogenase YpsIP31758_1506 PF08240 Alcohol dehydrogenase GroES-like domain YpsIP31758_1507 PF13407 Periplasmic binding protein domain YpsIP31758_1508 PF00005 ABC transporter YpsIP31758_1509 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_1510 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_1511 PF03466 LysR substrate binding domain YpsIP31758_1511 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1512 PF00180 Isocitrate/isopropylmalate dehydrogenase YpsIP31758_1515 PF02028 BCCT, betaine/carnitine/choline family transporter YpsIP31758_1516 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YpsIP31758_1516 PF00355 Rieske [2Fe-2S] domain YpsIP31758_1517 PF00111 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_1517 PF00970 Oxidoreductase FAD-binding domain YpsIP31758_1517 PF00175 Oxidoreductase NAD-binding domain YpsIP31758_1518 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YpsIP31758_1518 PF17287 POTRA domain YpsIP31758_1518 PF08479 POTRA domain, ShlB-type YpsIP31758_1519 PF05860 haemagglutination activity domain YpsIP31758_1519 PF04829 Pre-toxin domain with VENN motif YpsIP31758_1519 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_1519 PF13332 Hemagglutinin repeat YpsIP31758_1520 PF18624 CDI immunity protein YpsIP31758_1521 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_1521 PF13332 Hemagglutinin repeat YpsIP31758_1521 PF05860 haemagglutination activity domain YpsIP31758_1521 PF04829 Pre-toxin domain with VENN motif YpsIP31758_1524 PF00005 ABC transporter YpsIP31758_1524 PF17912 MalK OB fold domain YpsIP31758_1525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YpsIP31758_1525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YpsIP31758_1525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YpsIP31758_1525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YpsIP31758_1526 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_1528 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1529 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1530 PF04041 beta-1,4-mannooligosaccharide phosphorylase YpsIP31758_1534 PF00924 Mechanosensitive ion channel YpsIP31758_1535 PF01867 CRISPR associated protein Cas1 YpsIP31758_1537 PF09611 CRISPR-associated protein (Cas_Csy1) YpsIP31758_1538 PF09614 CRISPR-associated protein (Cas_Csy2) YpsIP31758_1539 PF09615 CRISPR-associated protein (Cas_Csy3) YpsIP31758_1540 PF09618 CRISPR-associated protein (Cas_Csy4) YpsIP31758_1541 PF00248 Aldo/keto reductase family YpsIP31758_1543 PF00083 Sugar (and other) transporter YpsIP31758_1545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1545 PF03466 LysR substrate binding domain YpsIP31758_1546 PF00765 Autoinducer synthase YpsIP31758_1547 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_1547 PF03472 Autoinducer binding domain YpsIP31758_1549 PF02080 TrkA-C domain YpsIP31758_1549 PF03471 Transporter associated domain YpsIP31758_1549 PF00999 Sodium/hydrogen exchanger family YpsIP31758_1552 PF04349 Periplasmic glucan biosynthesis protein, MdoG YpsIP31758_1553 PF00535 Glycosyl transferase family 2 YpsIP31758_1554 PF07119 Protein of unknown function (DUF1375) YpsIP31758_1555 PF00854 POT family YpsIP31758_1556 PF03279 Bacterial lipid A biosynthesis acyltransferase YpsIP31758_1561 PF01594 AI-2E family transporter YpsIP31758_1563 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_1564 PF01266 FAD dependent oxidoreductase YpsIP31758_1565 PF13991 BssS protein family YpsIP31758_1566 PF06183 DinI-like family YpsIP31758_1567 PF01979 Amidohydrolase family YpsIP31758_1568 PF03992 Antibiotic biosynthesis monooxygenase YpsIP31758_1569 PF00575 S1 RNA binding domain YpsIP31758_1569 PF10150 Ribonuclease E/G family YpsIP31758_1569 PF12111 Polyribonucleotide phosphorylase C terminal YpsIP31758_1570 PF00849 RNA pseudouridylate synthase YpsIP31758_1570 PF01479 S4 domain YpsIP31758_1571 PF02545 Maf-like protein YpsIP31758_1573 PF02620 Large ribosomal RNA subunit accumulation protein YceD YpsIP31758_1574 PF01783 Ribosomal L32p protein family YpsIP31758_1575 PF02504 Fatty acid synthesis protein YpsIP31758_1576 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YpsIP31758_1576 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YpsIP31758_1577 PF00698 Acyl transferase domain YpsIP31758_1579 PF00550 Phosphopantetheine attachment site YpsIP31758_1580 PF00109 Beta-ketoacyl synthase, N-terminal domain YpsIP31758_1580 PF02801 Beta-ketoacyl synthase, C-terminal domain YpsIP31758_1581 PF01063 Amino-transferase class IV YpsIP31758_1582 PF02618 YceG-like family YpsIP31758_1583 PF02223 Thymidylate kinase YpsIP31758_1584 PF09115 DNA polymerase III, delta subunit, C terminal YpsIP31758_1585 PF01026 TatD related DNase YpsIP31758_1586 PF00367 phosphotransferase system, EIIB YpsIP31758_1586 PF02378 Phosphotransferase system, EIIC YpsIP31758_1587 PF08501 Shikimate dehydrogenase substrate binding domain YpsIP31758_1588 PF01230 HIT domain YpsIP31758_1589 PF07233 Protein of unknown function (DUF1425) YpsIP31758_1590 PF13036 Peptidoglycan-synthase activator LpoB YpsIP31758_1590 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YpsIP31758_1591 PF01636 Phosphotransferase enzyme family YpsIP31758_1592 PF00933 Glycosyl hydrolase family 3 N terminal domain YpsIP31758_1593 PF05728 Uncharacterised protein family (UPF0227) YpsIP31758_1594 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_1597 PF05433 Glycine zipper 2TM domain YpsIP31758_1598 PF17757 UvrB interaction domain YpsIP31758_1598 PF00271 Helicase conserved C-terminal domain YpsIP31758_1598 PF03461 TRCF domain YpsIP31758_1598 PF02559 CarD-like/TRCF domain YpsIP31758_1598 PF00270 DEAD/DEAH box helicase YpsIP31758_1600 PF02687 FtsX-like permease family YpsIP31758_1600 PF12704 MacB-like periplasmic core domain YpsIP31758_1601 PF00005 ABC transporter YpsIP31758_1602 PF02687 FtsX-like permease family YpsIP31758_1602 PF12704 MacB-like periplasmic core domain YpsIP31758_1603 PF00480 ROK family YpsIP31758_1604 PF02146 Sir2 family YpsIP31758_1605 PF01546 Peptidase family M20/M25/M40 YpsIP31758_1605 PF07687 Peptidase dimerisation domain YpsIP31758_1606 PF08007 Cupin superfamily protein YpsIP31758_1607 PF08918 PhoQ Sensor YpsIP31758_1607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_1608 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_1608 PF00072 Response regulator receiver domain YpsIP31758_1610 PF00206 Lyase YpsIP31758_1610 PF08328 Adenylosuccinate lyase C-terminal YpsIP31758_1611 PF04356 Protein of unknown function (DUF489) YpsIP31758_1613 PF00293 NUDIX domain YpsIP31758_1614 PF00849 RNA pseudouridylate synthase YpsIP31758_1615 PF00180 Isocitrate/isopropylmalate dehydrogenase YpsIP31758_1616 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_1616 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YpsIP31758_1618 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YpsIP31758_1618 PF08447 PAS fold YpsIP31758_1619 PF05368 NmrA-like family YpsIP31758_1620 PF01638 HxlR-like helix-turn-helix YpsIP31758_1622 PF00328 Histidine phosphatase superfamily (branch 2) YpsIP31758_1623 PF14001 YdfZ protein YpsIP31758_1625 PF13404 AsnC-type helix-turn-helix domain YpsIP31758_1625 PF01037 Lrp/AsnC ligand binding domain YpsIP31758_1627 PF10777 Inner membrane protein YlaC YpsIP31758_1628 PF00698 Acyl transferase domain YpsIP31758_1628 PF08240 Alcohol dehydrogenase GroES-like domain YpsIP31758_1628 PF02801 Beta-ketoacyl synthase, C-terminal domain YpsIP31758_1628 PF00107 Zinc-binding dehydrogenase YpsIP31758_1628 PF00109 Beta-ketoacyl synthase, N-terminal domain YpsIP31758_1628 PF16197 Ketoacyl-synthetase C-terminal extension YpsIP31758_1628 PF00550 Phosphopantetheine attachment site YpsIP31758_1628 PF14765 Polyketide synthase dehydratase YpsIP31758_1628 PF08659 KR domain YpsIP31758_1629 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YpsIP31758_1629 PF02837 Glycosyl hydrolases family 2, sugar binding domain YpsIP31758_1629 PF16353 Domain of unknown function(DUF4981) YpsIP31758_1629 PF02929 Beta galactosidase small chain YpsIP31758_1629 PF00703 Glycosyl hydrolases family 2 YpsIP31758_1630 PF10781 Dextransucrase DSRB YpsIP31758_1631 PF00672 HAMP domain YpsIP31758_1631 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YpsIP31758_1631 PF02203 Tar ligand binding domain homologue YpsIP31758_1632 PF02308 MgtC family YpsIP31758_1633 PF00690 Cation transporter/ATPase, N-terminus YpsIP31758_1633 PF00689 Cation transporting ATPase, C-terminus YpsIP31758_1634 PF05247 Flagellar transcriptional activator (FlhD) YpsIP31758_1635 PF05280 Flagellar transcriptional activator (FlhC) YpsIP31758_1636 PF01618 MotA/TolQ/ExbB proton channel family YpsIP31758_1637 PF13677 Membrane MotB of proton-channel complex MotA/MotB YpsIP31758_1637 PF00691 OmpA family YpsIP31758_1638 PF02895 Signal transducing histidine kinase, homodimeric domain YpsIP31758_1638 PF01584 CheW-like domain YpsIP31758_1638 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_1638 PF09078 CheY binding YpsIP31758_1638 PF01627 Hpt domain YpsIP31758_1639 PF01584 CheW-like domain YpsIP31758_1642 PF00672 HAMP domain YpsIP31758_1642 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YpsIP31758_1642 PF02203 Tar ligand binding domain homologue YpsIP31758_1643 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YpsIP31758_1643 PF02203 Tar ligand binding domain homologue YpsIP31758_1643 PF00672 HAMP domain YpsIP31758_1644 PF03705 CheR methyltransferase, all-alpha domain YpsIP31758_1644 PF01739 CheR methyltransferase, SAM binding domain YpsIP31758_1645 PF00072 Response regulator receiver domain YpsIP31758_1645 PF01339 CheB methylesterase YpsIP31758_1646 PF00072 Response regulator receiver domain YpsIP31758_1647 PF04344 Chemotaxis phosphatase, CheZ YpsIP31758_1649 PF01510 N-acetylmuramoyl-L-alanine amidase YpsIP31758_1650 PF05662 Coiled stalk of trimeric autotransporter adhesin YpsIP31758_1650 PF05658 Head domain of trimeric autotransporter adhesin YpsIP31758_1650 PF03895 YadA-like membrane anchor domain YpsIP31758_1650 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_1650 PF05662 Coiled stalk of trimeric autotransporter adhesin YpsIP31758_1650 PF05658 Head domain of trimeric autotransporter adhesin YpsIP31758_1650 PF03895 YadA-like membrane anchor domain YpsIP31758_1650 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_1650 PF05662 Coiled stalk of trimeric autotransporter adhesin YpsIP31758_1650 PF05658 Head domain of trimeric autotransporter adhesin YpsIP31758_1650 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_1650 PF03895 YadA-like membrane anchor domain YpsIP31758_1652 PF01168 Alanine racemase, N-terminal domain YpsIP31758_1652 PF00842 Alanine racemase, C-terminal domain YpsIP31758_1660 PF07351 Protein of unknown function (DUF1480) YpsIP31758_1668 PF02470 MlaD protein YpsIP31758_1669 PF04403 Paraquat-inducible protein A YpsIP31758_1670 PF13185 GAF domain YpsIP31758_1671 PF04352 ProQ/FINO family YpsIP31758_1671 PF17516 ProQ C-terminal domain YpsIP31758_1672 PF11818 C-terminal domain of tail specific protease (DUF3340) YpsIP31758_1672 PF00595 PDZ domain YpsIP31758_1672 PF17804 Tail specific protease N-terminal domain YpsIP31758_1672 PF03572 Peptidase family S41 YpsIP31758_1673 PF01797 Transposase IS200 like YpsIP31758_1674 PF01435 Peptidase family M48 YpsIP31758_1675 PF00419 Fimbrial protein YpsIP31758_1676 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_1676 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_1677 PF13953 PapC C-terminal domain YpsIP31758_1677 PF13954 PapC N-terminal domain YpsIP31758_1677 PF00577 Outer membrane usher protein YpsIP31758_1679 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_1679 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_1680 PF07690 Major Facilitator Superfamily YpsIP31758_1682 PF14583 Oligogalacturonate lyase YpsIP31758_1683 PF09339 IclR helix-turn-helix domain YpsIP31758_1683 PF01614 Bacterial transcriptional regulator YpsIP31758_1684 PF01510 N-acetylmuramoyl-L-alanine amidase YpsIP31758_1686 PF04307 LexA-binding, inner membrane-associated putative hydrolase YpsIP31758_1687 PF06178 Oligogalacturonate-specific porin protein (KdgM) YpsIP31758_1688 PF01547 Bacterial extracellular solute-binding protein YpsIP31758_1689 PF03459 TOBE domain YpsIP31758_1689 PF00005 ABC transporter YpsIP31758_1689 PF17912 MalK OB fold domain YpsIP31758_1690 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1691 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1692 PF06917 Periplasmic pectate lyase YpsIP31758_1694 PF04962 KduI/IolB family YpsIP31758_1696 PF07883 Cupin domain YpsIP31758_1697 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_1699 PF14002 YniB-like protein YpsIP31758_1702 PF00950 ABC 3 transport family YpsIP31758_1703 PF00950 ABC 3 transport family YpsIP31758_1704 PF00005 ABC transporter YpsIP31758_1705 PF01297 Zinc-uptake complex component A periplasmic YpsIP31758_1706 PF01464 Transglycosylase SLT domain YpsIP31758_1707 PF01914 MarC family integral membrane protein YpsIP31758_1711 PF13619 KTSC domain YpsIP31758_1712 PF03129 Anticodon binding domain YpsIP31758_1712 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YpsIP31758_1712 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YpsIP31758_1712 PF02824 TGS domain YpsIP31758_1713 PF05198 Translation initiation factor IF-3, N-terminal domain YpsIP31758_1713 PF00707 Translation initiation factor IF-3, C-terminal domain YpsIP31758_1714 PF01632 Ribosomal protein L35 YpsIP31758_1715 PF00453 Ribosomal protein L20 YpsIP31758_1716 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YpsIP31758_1716 PF01409 tRNA synthetases class II core domain (F) YpsIP31758_1717 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YpsIP31758_1717 PF03483 B3/4 domain YpsIP31758_1717 PF03147 Ferredoxin-fold anticodon binding domain YpsIP31758_1717 PF03484 tRNA synthetase B5 domain YpsIP31758_1717 PF01588 Putative tRNA binding domain YpsIP31758_1718 PF00216 Bacterial DNA-binding protein YpsIP31758_1720 PF01032 FecCD transport family YpsIP31758_1721 PF00255 Glutathione peroxidase YpsIP31758_1722 PF00005 ABC transporter YpsIP31758_1723 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YpsIP31758_1725 PF01797 Transposase IS200 like YpsIP31758_1727 PF00551 Formyl transferase YpsIP31758_1727 PF02911 Formyl transferase, C-terminal domain YpsIP31758_1727 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_1728 PF01522 Polysaccharide deacetylase YpsIP31758_1729 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YpsIP31758_1730 PF00892 EamA-like transporter family YpsIP31758_1732 PF00877 NlpC/P60 family YpsIP31758_1733 PF10437 Bacterial lipoate protein ligase C-terminus YpsIP31758_1733 PF03099 Biotin/lipoate A/B protein ligase family YpsIP31758_1734 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YpsIP31758_1735 PF00793 DAHP synthetase I family YpsIP31758_1736 PF03618 Kinase/pyrophosphorylase YpsIP31758_1737 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YpsIP31758_1737 PF02896 PEP-utilising enzyme, TIM barrel domain YpsIP31758_1737 PF00391 PEP-utilising enzyme, mobile domain YpsIP31758_1738 PF01594 AI-2E family transporter YpsIP31758_1739 PF13183 4Fe-4S dicluster domain YpsIP31758_1739 PF02913 FAD linked oxidases, C-terminal domain YpsIP31758_1739 PF01565 FAD binding domain YpsIP31758_1740 PF03061 Thioesterase superfamily YpsIP31758_1741 PF01521 Iron-sulphur cluster biosynthesis YpsIP31758_1742 PF01458 Uncharacterized protein family (UPF0051) YpsIP31758_1743 PF00005 ABC transporter YpsIP31758_1744 PF01458 Uncharacterized protein family (UPF0051) YpsIP31758_1745 PF00266 Aminotransferase class-V YpsIP31758_1746 PF02657 Fe-S metabolism associated domain YpsIP31758_1747 PF03734 L,D-transpeptidase catalytic domain YpsIP31758_1747 PF01476 LysM domain YpsIP31758_1747 PF17969 L,D-transpeptidase C-terminal domain YpsIP31758_1748 PF04728 Lipoprotein leucine-zipper YpsIP31758_1749 PF00224 Pyruvate kinase, barrel domain YpsIP31758_1749 PF02887 Pyruvate kinase, alpha/beta domain YpsIP31758_1750 PF01554 MatE YpsIP31758_1751 PF00677 Lumazine binding domain YpsIP31758_1753 PF07690 Major Facilitator Superfamily YpsIP31758_1754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1754 PF03466 LysR substrate binding domain YpsIP31758_1755 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_1756 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YpsIP31758_1756 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YpsIP31758_1757 PF00877 NlpC/P60 family YpsIP31758_1758 PF00462 Glutaredoxin YpsIP31758_1759 PF00929 Exonuclease YpsIP31758_1760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YpsIP31758_1762 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YpsIP31758_1763 PF16925 Tetracyclin repressor-like, C-terminal domain YpsIP31758_1763 PF00440 Bacterial regulatory proteins, tetR family YpsIP31758_1764 PF00884 Sulfatase YpsIP31758_1764 PF08019 Phosphoethanolamine transferase EptA/EptB YpsIP31758_1765 PF06945 Protein of unknown function (DUF1289) YpsIP31758_1766 PF00248 Aldo/keto reductase family YpsIP31758_1767 PF01047 MarR family YpsIP31758_1768 PF01797 Transposase IS200 like YpsIP31758_1769 PF05433 Glycine zipper 2TM domain YpsIP31758_1770 PF03702 Anhydro-N-acetylmuramic acid kinase YpsIP31758_1771 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YpsIP31758_1772 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YpsIP31758_1772 PF01243 Pyridoxamine 5'-phosphate oxidase YpsIP31758_1773 PF01479 S4 domain YpsIP31758_1773 PF00579 tRNA synthetases class I (W and Y) YpsIP31758_1774 PF08543 Phosphomethylpyrimidine kinase YpsIP31758_1775 PF02798 Glutathione S-transferase, N-terminal domain YpsIP31758_1775 PF00043 Glutathione S-transferase, C-terminal domain YpsIP31758_1776 PF11656 YjbD family (DUF3811) YpsIP31758_1777 PF04893 Yip1 domain YpsIP31758_1778 PF00854 POT family YpsIP31758_1780 PF00005 ABC transporter YpsIP31758_1781 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YpsIP31758_1781 PF00005 ABC transporter YpsIP31758_1782 PF12911 N-terminal TM domain of oligopeptide transport permease C YpsIP31758_1782 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1783 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1784 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YpsIP31758_1785 PF00158 Sigma-54 interaction domain YpsIP31758_1785 PF02954 Bacterial regulatory protein, Fis family YpsIP31758_1786 PF04012 PspA/IM30 family YpsIP31758_1787 PF06667 Phage shock protein B YpsIP31758_1788 PF04024 PspC domain YpsIP31758_1790 PF04317 YcjX-like family, DUF463 YpsIP31758_1791 PF05128 Domain of unknown function (DUF697) YpsIP31758_1794 PF00158 Sigma-54 interaction domain YpsIP31758_1794 PF18024 Helix-turn-helix domain YpsIP31758_1795 PF08534 Redoxin YpsIP31758_1796 PF13378 Enolase C-terminal domain-like YpsIP31758_1796 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YpsIP31758_1797 PF00246 Zinc carboxypeptidase YpsIP31758_1798 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YpsIP31758_1799 PF01544 CorA-like Mg2+ transporter protein YpsIP31758_1801 PF07859 alpha/beta hydrolase fold YpsIP31758_1801 PF13472 GDSL-like Lipase/Acylhydrolase family YpsIP31758_1802 PF01171 PP-loop family YpsIP31758_1803 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YpsIP31758_1803 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YpsIP31758_1803 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YpsIP31758_1803 PF10371 Domain of unknown function YpsIP31758_1803 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YpsIP31758_1804 PF00893 Small Multidrug Resistance protein YpsIP31758_1805 PF02308 MgtC family YpsIP31758_1806 PF03891 Domain of unknown function (DUF333) YpsIP31758_1807 PF03724 META domain YpsIP31758_1808 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YpsIP31758_1808 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YpsIP31758_1809 PF11739 Dicarboxylate transport YpsIP31758_1810 PF13617 YnbE-like lipoprotein YpsIP31758_1811 PF07027 Protein of unknown function (DUF1318) YpsIP31758_1812 PF08125 Mannitol dehydrogenase C-terminal domain YpsIP31758_1812 PF01232 Mannitol dehydrogenase Rossmann domain YpsIP31758_1813 PF00325 Bacterial regulatory proteins, crp family YpsIP31758_1813 PF04198 Putative sugar-binding domain YpsIP31758_1814 PF02525 Flavodoxin-like fold YpsIP31758_1815 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YpsIP31758_1815 PF00271 Helicase conserved C-terminal domain YpsIP31758_1815 PF04408 Helicase associated domain (HA2) YpsIP31758_1815 PF11898 Domain of unknown function (DUF3418) YpsIP31758_1815 PF00270 DEAD/DEAH box helicase YpsIP31758_1818 PF00089 Trypsin YpsIP31758_1820 PF01292 Prokaryotic cytochrome b561 YpsIP31758_1821 PF04264 YceI-like domain YpsIP31758_1823 PF14431 YwqJ-like deaminase YpsIP31758_1823 PF18807 Tripartite Tc toxins repeat YpsIP31758_1824 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YpsIP31758_1825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_1825 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_1825 PF00672 HAMP domain YpsIP31758_1826 PF00072 Response regulator receiver domain YpsIP31758_1826 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_1828 PF13520 Amino acid permease YpsIP31758_1829 PF07338 Protein of unknown function (DUF1471) YpsIP31758_1830 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YpsIP31758_1830 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YpsIP31758_1830 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YpsIP31758_1831 PF02233 NAD(P) transhydrogenase beta subunit YpsIP31758_1832 PF00582 Universal stress protein family YpsIP31758_1833 PF13545 Crp-like helix-turn-helix domain YpsIP31758_1833 PF00027 Cyclic nucleotide-binding domain YpsIP31758_1834 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YpsIP31758_1834 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YpsIP31758_1835 PF00245 Alkaline phosphatase YpsIP31758_1837 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_1838 PF01842 ACT domain YpsIP31758_1839 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YpsIP31758_1839 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YpsIP31758_1839 PF00205 Thiamine pyrophosphate enzyme, central domain YpsIP31758_1846 PF01048 Phosphorylase superfamily YpsIP31758_1846 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YpsIP31758_1847 PF00005 ABC transporter YpsIP31758_1848 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1849 PF09084 NMT1/THI5 like YpsIP31758_1851 PF00005 ABC transporter YpsIP31758_1852 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_1853 PF13407 Periplasmic binding protein domain YpsIP31758_1855 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_1856 PF03553 Na+/H+ antiporter family YpsIP31758_1857 PF00155 Aminotransferase class I and II YpsIP31758_1859 PF00892 EamA-like transporter family YpsIP31758_1862 PF00171 Aldehyde dehydrogenase family YpsIP31758_1863 PF01590 GAF domain YpsIP31758_1863 PF02954 Bacterial regulatory protein, Fis family YpsIP31758_1863 PF00158 Sigma-54 interaction domain YpsIP31758_1864 PF00106 short chain dehydrogenase YpsIP31758_1865 PF06932 Protein of unknown function (DUF1283) YpsIP31758_1866 PF06649 Protein of unknown function (DUF1161) YpsIP31758_1867 PF00654 Voltage gated chloride channel YpsIP31758_1869 PF00480 ROK family YpsIP31758_1870 PF03466 LysR substrate binding domain YpsIP31758_1870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1871 PF07690 Major Facilitator Superfamily YpsIP31758_1872 PF05472 DNA replication terminus site-binding protein (Ter protein) YpsIP31758_1873 PF10415 Fumarase C C-terminus YpsIP31758_1873 PF00206 Lyase YpsIP31758_1874 PF01238 Phosphomannose isomerase type I YpsIP31758_1875 PF06097 Bacterial protein of unknown function (DUF945) YpsIP31758_1878 PF00962 Adenosine/AMP deaminase YpsIP31758_1880 PF13593 SBF-like CPA transporter family (DUF4137) YpsIP31758_1881 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YpsIP31758_1881 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YpsIP31758_1882 PF02311 AraC-like ligand binding domain YpsIP31758_1882 PF12833 Helix-turn-helix domain YpsIP31758_1883 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_1884 PF00005 ABC transporter YpsIP31758_1885 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YpsIP31758_1886 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_1887 PF02610 L-arabinose isomerase YpsIP31758_1887 PF11762 L-arabinose isomerase C-terminal domain YpsIP31758_1889 PF00664 ABC transporter transmembrane region YpsIP31758_1889 PF00005 ABC transporter YpsIP31758_1889 PF03412 Peptidase C39 family YpsIP31758_1890 PF13533 Biotin-lipoyl like YpsIP31758_1891 PF00005 ABC transporter YpsIP31758_1891 PF00664 ABC transporter transmembrane region YpsIP31758_1891 PF03412 Peptidase C39 family YpsIP31758_1893 PF10754 Protein of unknown function (DUF2569) YpsIP31758_1894 PF02508 Rnf-Nqr subunit, membrane protein YpsIP31758_1895 PF04060 Putative Fe-S cluster YpsIP31758_1896 PF13375 RnfC Barrel sandwich hybrid domain YpsIP31758_1896 PF13237 4Fe-4S dicluster domain YpsIP31758_1896 PF10531 SLBB domain YpsIP31758_1896 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YpsIP31758_1897 PF06445 GyrI-like small molecule binding domain YpsIP31758_1897 PF12833 Helix-turn-helix domain YpsIP31758_1898 PF03116 NQR2, RnfD, RnfE family YpsIP31758_1899 PF04205 FMN-binding domain YpsIP31758_1900 PF02508 Rnf-Nqr subunit, membrane protein YpsIP31758_1901 PF00633 Helix-hairpin-helix motif YpsIP31758_1901 PF10576 Iron-sulfur binding domain of endonuclease III YpsIP31758_1901 PF00730 HhH-GPD superfamily base excision DNA repair protein YpsIP31758_1902 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_1903 PF07690 Major Facilitator Superfamily YpsIP31758_1904 PF00773 RNB domain YpsIP31758_1904 PF00575 S1 RNA binding domain YpsIP31758_1904 PF17876 Cold shock domain YpsIP31758_1904 PF08206 Ribonuclease B OB domain YpsIP31758_1905 PF02554 Carbon starvation protein CstA YpsIP31758_1905 PF13722 5TM C-terminal transporter carbon starvation CstA YpsIP31758_1907 PF04328 Selenoprotein, putative YpsIP31758_1908 PF00923 Transaldolase/Fructose-6-phosphate aldolase YpsIP31758_1910 PF00596 Class II Aldolase and Adducin N-terminal domain YpsIP31758_1911 PF05433 Glycine zipper 2TM domain YpsIP31758_1912 PF01253 Translation initiation factor SUI1 YpsIP31758_1913 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YpsIP31758_1915 PF18073 Rubredoxin metal binding domain YpsIP31758_1916 PF06305 Lipopolysaccharide assembly protein A domain YpsIP31758_1917 PF01569 PAP2 superfamily YpsIP31758_1919 PF00925 GTP cyclohydrolase II YpsIP31758_1920 PF00694 Aconitase C-terminal domain YpsIP31758_1920 PF00330 Aconitase family (aconitate hydratase) YpsIP31758_1922 PF03466 LysR substrate binding domain YpsIP31758_1922 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1923 PF01751 Toprim domain YpsIP31758_1923 PF08272 Topoisomerase I zinc-ribbon-like YpsIP31758_1923 PF01131 DNA topoisomerase YpsIP31758_1923 PF01396 Topoisomerase DNA binding C4 zinc finger YpsIP31758_1924 PF10692 Protein of unknown function (DUF2498) YpsIP31758_1925 PF08496 Peptidase family S49 N-terminal YpsIP31758_1925 PF01343 Peptidase family S49 YpsIP31758_1926 PF00106 short chain dehydrogenase YpsIP31758_1927 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YpsIP31758_1928 PF00849 RNA pseudouridylate synthase YpsIP31758_1928 PF01479 S4 domain YpsIP31758_1929 PF01300 Telomere recombination YpsIP31758_1930 PF02811 PHP domain YpsIP31758_1932 PF00425 chorismate binding enzyme YpsIP31758_1932 PF04715 Anthranilate synthase component I, N terminal region YpsIP31758_1933 PF00117 Glutamine amidotransferase class-I YpsIP31758_1934 PF00591 Glycosyl transferase family, a/b domain YpsIP31758_1934 PF02885 Glycosyl transferase family, helical bundle domain YpsIP31758_1935 PF00218 Indole-3-glycerol phosphate synthase YpsIP31758_1935 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YpsIP31758_1936 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_1937 PF00290 Tryptophan synthase alpha chain YpsIP31758_1940 PF03922 OmpW family YpsIP31758_1944 PF04279 Intracellular septation protein A YpsIP31758_1945 PF03061 Thioesterase superfamily YpsIP31758_1946 PF03544 Gram-negative bacterial TonB protein C-terminal YpsIP31758_1947 PF03795 YCII-related domain YpsIP31758_1951 PF13505 Outer membrane protein beta-barrel domain YpsIP31758_1953 PF13091 PLD-like domain YpsIP31758_1953 PF13396 Phospholipase_D-nuclease N-terminal YpsIP31758_1954 PF04269 Protein of unknown function, DUF440 YpsIP31758_1956 PF00005 ABC transporter YpsIP31758_1956 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YpsIP31758_1957 PF00005 ABC transporter YpsIP31758_1957 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YpsIP31758_1958 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1958 PF12911 N-terminal TM domain of oligopeptide transport permease C YpsIP31758_1959 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_1960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YpsIP31758_1962 PF01914 MarC family integral membrane protein YpsIP31758_1963 PF00171 Aldehyde dehydrogenase family YpsIP31758_1963 PF00465 Iron-containing alcohol dehydrogenase YpsIP31758_1964 PF00265 Thymidine kinase YpsIP31758_1966 PF00816 H-NS histone family YpsIP31758_1967 PF01797 Transposase IS200 like YpsIP31758_1968 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YpsIP31758_1968 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YpsIP31758_1968 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YpsIP31758_1969 PF00072 Response regulator receiver domain YpsIP31758_1970 PF02810 SEC-C motif YpsIP31758_1971 PF00551 Formyl transferase YpsIP31758_1971 PF01842 ACT domain YpsIP31758_1974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1974 PF03466 LysR substrate binding domain YpsIP31758_1976 PF03372 Endonuclease/Exonuclease/phosphatase family YpsIP31758_1977 PF00293 NUDIX domain YpsIP31758_1978 PF07383 Protein of unknown function (DUF1496) YpsIP31758_1979 PF01131 DNA topoisomerase YpsIP31758_1979 PF01751 Toprim domain YpsIP31758_1980 PF00586 AIR synthase related protein, N-terminal domain YpsIP31758_1980 PF02769 AIR synthase related protein, C-terminal domain YpsIP31758_1981 PF00881 Nitroreductase family YpsIP31758_1982 PF01343 Peptidase family S49 YpsIP31758_1983 PF00710 Asparaginase, N-terminal YpsIP31758_1983 PF17763 Glutaminase/Asparaginase C-terminal domain YpsIP31758_1984 PF00857 Isochorismatase family YpsIP31758_1985 PF07023 Protein of unknown function (DUF1315) YpsIP31758_1986 PF01641 SelR domain YpsIP31758_1987 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YpsIP31758_1987 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YpsIP31758_1989 PF01263 Aldose 1-epimerase YpsIP31758_1990 PF06629 MltA-interacting protein MipA YpsIP31758_1991 PF08298 PrkA AAA domain YpsIP31758_1991 PF06798 PrkA serine protein kinase C-terminal domain YpsIP31758_1992 PF04285 Protein of unknown function (DUF444) YpsIP31758_1994 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_1994 PF03466 LysR substrate binding domain YpsIP31758_1995 PF02678 Pirin YpsIP31758_1995 PF05726 Pirin C-terminal cupin domain YpsIP31758_1996 PF07690 Major Facilitator Superfamily YpsIP31758_1997 PF01266 FAD dependent oxidoreductase YpsIP31758_1998 PF04293 SpoVR like protein YpsIP31758_1999 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_1999 PF07840 FadR C-terminal domain YpsIP31758_2000 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YpsIP31758_2001 PF02600 Disulfide bond formation protein DsbB YpsIP31758_2004 PF00266 Aminotransferase class-V YpsIP31758_2006 PF03692 Putative zinc- or iron-chelating domain YpsIP31758_2007 PF01557 Fumarylacetoacetate (FAA) hydrolase family YpsIP31758_2008 PF13406 Transglycosylase SLT domain YpsIP31758_2009 PF05166 YcgL domain YpsIP31758_2010 PF05209 Septum formation inhibitor MinC, N-terminal domain YpsIP31758_2010 PF03775 Septum formation inhibitor MinC, C-terminal domain YpsIP31758_2011 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YpsIP31758_2012 PF03776 Septum formation topological specificity factor MinE YpsIP31758_2013 PF01612 3'-5' exonuclease YpsIP31758_2013 PF00570 HRDC domain YpsIP31758_2014 PF13193 AMP-binding enzyme C-terminal domain YpsIP31758_2014 PF00501 AMP-binding enzyme YpsIP31758_2015 PF03843 Outer membrane lipoprotein Slp family YpsIP31758_2016 PF00814 Glycoprotease family YpsIP31758_2017 PF04851 Type III restriction enzyme, res subunit YpsIP31758_2017 PF13307 Helicase C-terminal domain YpsIP31758_2018 PF01042 Endoribonuclease L-PSP YpsIP31758_2019 PF00893 Small Multidrug Resistance protein YpsIP31758_2020 PF00893 Small Multidrug Resistance protein YpsIP31758_2021 PF01081 KDPG and KHG aldolase YpsIP31758_2022 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YpsIP31758_2022 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YpsIP31758_2023 PF01418 Helix-turn-helix domain, rpiR family YpsIP31758_2023 PF01380 SIS domain YpsIP31758_2024 PF00224 Pyruvate kinase, barrel domain YpsIP31758_2024 PF02887 Pyruvate kinase, alpha/beta domain YpsIP31758_2025 PF03279 Bacterial lipid A biosynthesis acyltransferase YpsIP31758_2026 PF01476 LysM domain YpsIP31758_2026 PF08525 Opacity-associated protein A N-terminal motif YpsIP31758_2026 PF01551 Peptidase family M23 YpsIP31758_2027 PF01297 Zinc-uptake complex component A periplasmic YpsIP31758_2028 PF00005 ABC transporter YpsIP31758_2029 PF00950 ABC 3 transport family YpsIP31758_2030 PF05491 RuvB C-terminal winged helix domain YpsIP31758_2030 PF05496 Holliday junction DNA helicase RuvB P-loop domain YpsIP31758_2030 PF17864 RuvB AAA lid domain YpsIP31758_2031 PF07499 RuvA, C-terminal domain YpsIP31758_2031 PF01330 RuvA N terminal domain YpsIP31758_2032 PF02075 Crossover junction endodeoxyribonuclease RuvC YpsIP31758_2033 PF01709 Transcriptional regulator YpsIP31758_2034 PF00293 NUDIX domain YpsIP31758_2035 PF01336 OB-fold nucleic acid binding domain YpsIP31758_2035 PF00152 tRNA synthetases class II (D, K and N) YpsIP31758_2035 PF02938 GAD domain YpsIP31758_2036 PF01904 Protein of unknown function DUF72 YpsIP31758_2037 PF01124 MAPEG family YpsIP31758_2038 PF13649 Methyltransferase domain YpsIP31758_2039 PF08003 Protein of unknown function (DUF1698) YpsIP31758_2040 PF03932 CutC family YpsIP31758_2041 PF06185 YecM protein YpsIP31758_2043 PF03485 Arginyl tRNA synthetase N terminal domain YpsIP31758_2043 PF00750 tRNA synthetases class I (R) YpsIP31758_2043 PF05746 DALR anticodon binding domain YpsIP31758_2044 PF13332 Hemagglutinin repeat YpsIP31758_2044 PF05860 haemagglutination activity domain YpsIP31758_2045 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YpsIP31758_2045 PF17287 POTRA domain YpsIP31758_2045 PF08479 POTRA domain, ShlB-type YpsIP31758_2046 PF03023 Lipid II flippase MurJ YpsIP31758_2047 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YpsIP31758_2048 PF04337 Protein of unknown function, DUF480 YpsIP31758_2049 PF13302 Acetyltransferase (GNAT) domain YpsIP31758_2050 PF07690 Major Facilitator Superfamily YpsIP31758_2051 PF07273 Protein of unknown function (DUF1439) YpsIP31758_2052 PF02613 Nitrate reductase delta subunit YpsIP31758_2053 PF02811 PHP domain YpsIP31758_2054 PF00480 ROK family YpsIP31758_2054 PF01325 Iron dependent repressor, N-terminal DNA binding domain YpsIP31758_2055 PF03009 Glycerophosphoryl diester phosphodiesterase family YpsIP31758_2056 PF08402 TOBE domain YpsIP31758_2056 PF00005 ABC transporter YpsIP31758_2057 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2058 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2060 PF03009 Glycerophosphoryl diester phosphodiesterase family YpsIP31758_2061 PF01740 STAS domain YpsIP31758_2061 PF00916 Sulfate permease family YpsIP31758_2062 PF00793 DAHP synthetase I family YpsIP31758_2063 PF13369 Transglutaminase-like superfamily YpsIP31758_2064 PF04247 Invasion gene expression up-regulator, SirB YpsIP31758_2065 PF13847 Methyltransferase domain YpsIP31758_2065 PF17827 PrmC N-terminal domain YpsIP31758_2066 PF03462 PCRF domain YpsIP31758_2066 PF00472 RF-1 domain YpsIP31758_2067 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YpsIP31758_2067 PF01488 Shikimate / quinate 5-dehydrogenase YpsIP31758_2067 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YpsIP31758_2068 PF03550 Outer membrane lipoprotein LolB YpsIP31758_2069 PF08544 GHMP kinases C terminal YpsIP31758_2069 PF00288 GHMP kinases N terminal domain YpsIP31758_2070 PF14572 Phosphoribosyl synthetase-associated domain YpsIP31758_2070 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YpsIP31758_2071 PF10762 Protein of unknown function (DUF2583) YpsIP31758_2074 PF01195 Peptidyl-tRNA hydrolase YpsIP31758_2075 PF06071 Protein of unknown function (DUF933) YpsIP31758_2075 PF01926 50S ribosome-binding GTPase YpsIP31758_2082 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YpsIP31758_2084 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_2084 PF00072 Response regulator receiver domain YpsIP31758_2085 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_2085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_2085 PF00672 HAMP domain YpsIP31758_2094 PF08242 Methyltransferase domain YpsIP31758_2107 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_2108 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YpsIP31758_2108 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YpsIP31758_2110 PF05962 HutD YpsIP31758_2111 PF01979 Amidohydrolase family YpsIP31758_2112 PF07702 UTRA domain YpsIP31758_2112 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_2113 PF01979 Amidohydrolase family YpsIP31758_2115 PF00267 Gram-negative porin YpsIP31758_2117 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YpsIP31758_2118 PF04996 Succinylarginine dihydrolase YpsIP31758_2119 PF00171 Aldehyde dehydrogenase family YpsIP31758_2120 PF04958 Arginine N-succinyltransferase beta subunit YpsIP31758_2121 PF00202 Aminotransferase class-III YpsIP31758_2122 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_2122 PF00155 Aminotransferase class I and II YpsIP31758_2123 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YpsIP31758_2123 PF00672 HAMP domain YpsIP31758_2123 PF07730 Histidine kinase YpsIP31758_2123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_2124 PF01699 Sodium/calcium exchanger protein YpsIP31758_2125 PF02562 PhoH-like protein YpsIP31758_2128 PF13994 PgaD-like protein YpsIP31758_2129 PF00535 Glycosyl transferase family 2 YpsIP31758_2130 PF01522 Polysaccharide deacetylase YpsIP31758_2130 PF14883 Hypothetical glycosyl hydrolase family 13 YpsIP31758_2132 PF00557 Metallopeptidase family M24 YpsIP31758_2133 PF09313 Domain of unknown function (DUF1971) YpsIP31758_2133 PF03848 Tellurite resistance protein TehB YpsIP31758_2135 PF00578 AhpC/TSA family YpsIP31758_2136 PF12704 MacB-like periplasmic core domain YpsIP31758_2136 PF02687 FtsX-like permease family YpsIP31758_2136 PF00005 ABC transporter YpsIP31758_2138 PF00005 ABC transporter YpsIP31758_2138 PF02687 FtsX-like permease family YpsIP31758_2138 PF12704 MacB-like periplasmic core domain YpsIP31758_2140 PF10634 Fe2+ transport protein YpsIP31758_2141 PF03239 Iron permease FTR1 family YpsIP31758_2143 PF04960 Glutaminase YpsIP31758_2145 PF00455 DeoR C terminal sensor domain YpsIP31758_2145 PF08220 DeoR-like helix-turn-helix domain YpsIP31758_2147 PF00324 Amino acid permease YpsIP31758_2148 PF00155 Aminotransferase class I and II YpsIP31758_2149 PF02508 Rnf-Nqr subunit, membrane protein YpsIP31758_2151 PF04909 Amidohydrolase YpsIP31758_2155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_2155 PF03466 LysR substrate binding domain YpsIP31758_2156 PF03328 HpcH/HpaI aldolase/citrate lyase family YpsIP31758_2157 PF01575 MaoC like domain YpsIP31758_2158 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YpsIP31758_2158 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YpsIP31758_2160 PF00072 Response regulator receiver domain YpsIP31758_2160 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_2161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_2161 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_2161 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_2161 PF00072 Response regulator receiver domain YpsIP31758_2161 PF00989 PAS fold YpsIP31758_2161 PF01627 Hpt domain YpsIP31758_2164 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_2164 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_2165 PF13954 PapC N-terminal domain YpsIP31758_2165 PF13953 PapC C-terminal domain YpsIP31758_2165 PF00577 Outer membrane usher protein YpsIP31758_2167 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_2167 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_2169 PF08402 TOBE domain YpsIP31758_2169 PF00005 ABC transporter YpsIP31758_2170 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2171 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2173 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YpsIP31758_2173 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YpsIP31758_2175 PF00480 ROK family YpsIP31758_2187 PF17482 Phage tail sheath C-terminal domain YpsIP31758_2187 PF04984 Phage tail sheath protein subtilisin-like domain YpsIP31758_2194 PF04606 Ogr/Delta-like zinc finger YpsIP31758_2197 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YpsIP31758_2198 PF07484 Phage Tail Collar Domain YpsIP31758_2222 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) YpsIP31758_2224 PF06381 Protein of unknown function (DUF1073) YpsIP31758_2226 PF04221 RelB antitoxin YpsIP31758_2227 PF05016 ParE toxin of type II toxin-antitoxin system, parDE YpsIP31758_2231 PF02195 ParB-like nuclease domain YpsIP31758_2236 PF00959 Phage lysozyme YpsIP31758_2239 PF06530 Phage antitermination protein Q YpsIP31758_2244 PF00772 DnaB-like helicase N terminal domain YpsIP31758_2244 PF03796 DnaB-like helicase C terminal domain YpsIP31758_2248 PF01381 Helix-turn-helix YpsIP31758_2248 PF00717 Peptidase S24-like YpsIP31758_2251 PF01066 CDP-alcohol phosphatidyltransferase YpsIP31758_2252 PF02151 UvrB/uvrC motif YpsIP31758_2252 PF08459 UvrC Helix-hairpin-helix N-terminal YpsIP31758_2252 PF01541 GIY-YIG catalytic domain YpsIP31758_2253 PF00072 Response regulator receiver domain YpsIP31758_2253 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_2254 PF10769 Protein of unknown function (DUF2594) YpsIP31758_2255 PF06942 GlpM protein YpsIP31758_2257 PF13505 Outer membrane protein beta-barrel domain YpsIP31758_2259 PF00324 Amino acid permease YpsIP31758_2260 PF01344 Kelch motif YpsIP31758_2261 PF03358 NADPH-dependent FMN reductase YpsIP31758_2262 PF04261 Dyp-type peroxidase family YpsIP31758_2263 PF09375 Imelysin YpsIP31758_2263 PF13473 Cupredoxin-like domain YpsIP31758_2264 PF03239 Iron permease FTR1 family YpsIP31758_2265 PF00474 Sodium:solute symporter family YpsIP31758_2268 PF14850 DNA-binding domain of Proline dehydrogenase YpsIP31758_2268 PF00171 Aldehyde dehydrogenase family YpsIP31758_2268 PF01619 Proline dehydrogenase YpsIP31758_2268 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YpsIP31758_2275 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_2278 PF02899 Phage integrase, N-terminal SAM-like domain YpsIP31758_2280 PF04542 Sigma-70 region 2 YpsIP31758_2280 PF04539 Sigma-70 region 3 YpsIP31758_2280 PF04545 Sigma-70, region 4 YpsIP31758_2281 PF00669 Bacterial flagellin N-terminal helical region YpsIP31758_2281 PF08884 Flagellin D3 domain YpsIP31758_2281 PF00700 Bacterial flagellin C-terminal helical region YpsIP31758_2283 PF07196 Flagellin hook IN motif YpsIP31758_2283 PF02465 Flagellar hook-associated protein 2 N-terminus YpsIP31758_2283 PF07195 Flagellar hook-associated protein 2 C-terminus YpsIP31758_2284 PF02561 Flagellar protein FliS YpsIP31758_2285 PF05400 Flagellar protein FliT YpsIP31758_2286 PF12833 Helix-turn-helix domain YpsIP31758_2287 PF01966 HD domain YpsIP31758_2288 PF00730 HhH-GPD superfamily base excision DNA repair protein YpsIP31758_2289 PF02049 Flagellar hook-basal body complex protein FliE YpsIP31758_2290 PF08345 Flagellar M-ring protein C-terminal YpsIP31758_2290 PF01514 Secretory protein of YscJ/FliF family YpsIP31758_2291 PF14841 FliG middle domain YpsIP31758_2291 PF01706 FliG C-terminal domain YpsIP31758_2291 PF14842 FliG N-terminal domain YpsIP31758_2292 PF02108 Flagellar assembly protein FliH YpsIP31758_2293 PF18269 T3SS EscN ATPase C-terminal domain YpsIP31758_2293 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YpsIP31758_2294 PF02050 Flagellar FliJ protein YpsIP31758_2295 PF02120 Flagellar hook-length control protein FliK YpsIP31758_2298 PF03748 Flagellar basal body-associated protein FliL YpsIP31758_2299 PF02154 Flagellar motor switch protein FliM YpsIP31758_2299 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YpsIP31758_2300 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YpsIP31758_2300 PF16973 Flagellar motor switch protein FliN N-terminal YpsIP31758_2301 PF04347 Flagellar biosynthesis protein, FliO YpsIP31758_2302 PF00813 FliP family YpsIP31758_2303 PF01313 Bacterial export proteins, family 3 YpsIP31758_2304 PF01311 Bacterial export proteins, family 1 YpsIP31758_2306 PF00294 pfkB family carbohydrate kinase YpsIP31758_2307 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_2308 PF00005 ABC transporter YpsIP31758_2309 PF13407 Periplasmic binding protein domain YpsIP31758_2310 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_2311 PF00596 Class II Aldolase and Adducin N-terminal domain YpsIP31758_2312 PF04198 Putative sugar-binding domain YpsIP31758_2313 PF00669 Bacterial flagellin N-terminal helical region YpsIP31758_2314 PF00460 Flagella basal body rod protein YpsIP31758_2314 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_2316 PF10135 Rod binding protein YpsIP31758_2316 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YpsIP31758_2317 PF02119 Flagellar P-ring protein YpsIP31758_2318 PF02107 Flagellar L-ring protein YpsIP31758_2319 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_2319 PF00460 Flagella basal body rod protein YpsIP31758_2320 PF00460 Flagella basal body rod protein YpsIP31758_2320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_2321 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_2321 PF00460 Flagella basal body rod protein YpsIP31758_2321 PF07559 Flagellar basal body protein FlaE YpsIP31758_2322 PF03963 Flagellar hook capping protein - N-terminal region YpsIP31758_2322 PF13861 FlgD Tudor-like domain YpsIP31758_2322 PF13860 FlgD Ig-like domain YpsIP31758_2323 PF00460 Flagella basal body rod protein YpsIP31758_2323 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YpsIP31758_2324 PF00460 Flagella basal body rod protein YpsIP31758_2325 PF13144 Chaperone for flagella basal body P-ring formation YpsIP31758_2325 PF17656 FlgA N-terminal domain YpsIP31758_2327 PF04316 Anti-sigma-28 factor, FlgM YpsIP31758_2328 PF05130 FlgN protein YpsIP31758_2329 PF11924 Inverse autotransporter, beta-domain YpsIP31758_2329 PF02369 Bacterial Ig-like domain (group 1) YpsIP31758_2329 PF09134 Invasin, domain 3 YpsIP31758_2329 PF07979 Intimin C-type lectin domain YpsIP31758_2332 PF06366 Flagellar protein FlhE YpsIP31758_2333 PF00771 FHIPEP family YpsIP31758_2334 PF01312 FlhB HrpN YscU SpaS Family YpsIP31758_2337 PF10709 Protein of unknown function (DUF2511) YpsIP31758_2339 PF04234 CopC domain YpsIP31758_2341 PF00210 Ferritin-like domain YpsIP31758_2343 PF06440 DNA polymerase III, theta subunit YpsIP31758_2344 PF00561 alpha/beta hydrolase fold YpsIP31758_2346 PF00326 Prolyl oligopeptidase family YpsIP31758_2346 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YpsIP31758_2347 PF13995 YebF-like protein YpsIP31758_2349 PF07130 YebG protein YpsIP31758_2350 PF00271 Helicase conserved C-terminal domain YpsIP31758_2350 PF00270 DEAD/DEAH box helicase YpsIP31758_2350 PF03880 DbpA RNA binding domain YpsIP31758_2351 PF02222 ATP-grasp domain YpsIP31758_2352 PF03701 Uncharacterised protein family (UPF0181) YpsIP31758_2353 PF04715 Anthranilate synthase component I, N terminal region YpsIP31758_2353 PF00425 chorismate binding enzyme YpsIP31758_2354 PF00293 NUDIX domain YpsIP31758_2355 PF03315 Serine dehydratase beta chain YpsIP31758_2355 PF03313 Serine dehydratase alpha chain YpsIP31758_2356 PF01613 Flavin reductase like domain YpsIP31758_2357 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YpsIP31758_2357 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YpsIP31758_2358 PF07690 Major Facilitator Superfamily YpsIP31758_2359 PF03328 HpcH/HpaI aldolase/citrate lyase family YpsIP31758_2360 PF01557 Fumarylacetoacetate (FAA) hydrolase family YpsIP31758_2361 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YpsIP31758_2362 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YpsIP31758_2363 PF00171 Aldehyde dehydrogenase family YpsIP31758_2364 PF01557 Fumarylacetoacetate (FAA) hydrolase family YpsIP31758_2365 PF01557 Fumarylacetoacetate (FAA) hydrolase family YpsIP31758_2366 PF01047 MarR family YpsIP31758_2367 PF03471 Transporter associated domain YpsIP31758_2367 PF03741 Integral membrane protein TerC family YpsIP31758_2368 PF03610 PTS system fructose IIA component YpsIP31758_2368 PF03830 PTS system sorbose subfamily IIB component YpsIP31758_2369 PF03609 PTS system sorbose-specific iic component YpsIP31758_2370 PF03613 PTS system mannose/fructose/sorbose family IID component YpsIP31758_2371 PF06173 Protein of unknown function (DUF986) YpsIP31758_2372 PF02659 Putative manganese efflux pump YpsIP31758_2373 PF00593 TonB dependent receptor YpsIP31758_2373 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_2374 PF08448 PAS fold YpsIP31758_2374 PF08447 PAS fold YpsIP31758_2374 PF05231 MASE1 YpsIP31758_2374 PF00990 Diguanylate cyclase, GGDEF domain YpsIP31758_2374 PF00563 EAL domain YpsIP31758_2374 PF13426 PAS domain YpsIP31758_2376 PF13847 Methyltransferase domain YpsIP31758_2380 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YpsIP31758_2381 PF00324 Amino acid permease YpsIP31758_2384 PF13974 YebO-like protein YpsIP31758_2385 PF13996 YobH-like protein YpsIP31758_2386 PF10964 Protein of unknown function (DUF2766) YpsIP31758_2387 PF12833 Helix-turn-helix domain YpsIP31758_2389 PF00005 ABC transporter YpsIP31758_2389 PF00664 ABC transporter transmembrane region YpsIP31758_2392 PF06167 Glucose-regulated metallo-peptidase M90 YpsIP31758_2393 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YpsIP31758_2393 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_2394 PF01306 LacY proton/sugar symporter YpsIP31758_2395 PF16874 Glycosyl hydrolase family 36 C-terminal domain YpsIP31758_2395 PF16875 Glycosyl hydrolase family 36 N-terminal domain YpsIP31758_2398 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YpsIP31758_2398 PF01648 4'-phosphopantetheinyl transferase superfamily YpsIP31758_2399 PF03480 Bacterial extracellular solute-binding protein, family 7 YpsIP31758_2401 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YpsIP31758_2402 PF00072 Response regulator receiver domain YpsIP31758_2402 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_2403 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YpsIP31758_2405 PF01522 Polysaccharide deacetylase YpsIP31758_2407 PF01554 MatE YpsIP31758_2408 PF00764 Arginosuccinate synthase YpsIP31758_2409 PF01070 FMN-dependent dehydrogenase YpsIP31758_2410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YpsIP31758_2410 PF13378 Enolase C-terminal domain-like YpsIP31758_2411 PF01557 Fumarylacetoacetate (FAA) hydrolase family YpsIP31758_2413 PF04134 Protein of unknown function, DUF393 YpsIP31758_2414 PF07690 Major Facilitator Superfamily YpsIP31758_2416 PF09134 Invasin, domain 3 YpsIP31758_2416 PF11924 Inverse autotransporter, beta-domain YpsIP31758_2416 PF02369 Bacterial Ig-like domain (group 1) YpsIP31758_2417 PF04363 Protein of unknown function (DUF496) YpsIP31758_2420 PF00929 Exonuclease YpsIP31758_2420 PF08411 Exonuclease C-terminal YpsIP31758_2421 PF13520 Amino acid permease YpsIP31758_2422 PF00465 Iron-containing alcohol dehydrogenase YpsIP31758_2423 PF00005 ABC transporter YpsIP31758_2424 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_2426 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_2428 PF08029 HisG, C-terminal domain YpsIP31758_2428 PF01634 ATP phosphoribosyltransferase YpsIP31758_2429 PF00815 Histidinol dehydrogenase YpsIP31758_2430 PF00155 Aminotransferase class I and II YpsIP31758_2431 PF00475 Imidazoleglycerol-phosphate dehydratase YpsIP31758_2432 PF00117 Glutamine amidotransferase class-I YpsIP31758_2433 PF00977 Histidine biosynthesis protein YpsIP31758_2434 PF00977 Histidine biosynthesis protein YpsIP31758_2435 PF01502 Phosphoribosyl-AMP cyclohydrolase YpsIP31758_2435 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YpsIP31758_2436 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YpsIP31758_2436 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YpsIP31758_2437 PF00483 Nucleotidyl transferase YpsIP31758_2438 PF00483 Nucleotidyl transferase YpsIP31758_2439 PF04183 IucA / IucC family YpsIP31758_2439 PF06276 Ferric iron reductase FhuF-like transporter YpsIP31758_2440 PF00593 TonB dependent receptor YpsIP31758_2440 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_2440 PF07660 Secretin and TonB N terminus short domain YpsIP31758_2441 PF01497 Periplasmic binding protein YpsIP31758_2442 PF01032 FecCD transport family YpsIP31758_2443 PF01032 FecCD transport family YpsIP31758_2444 PF00005 ABC transporter YpsIP31758_2445 PF06276 Ferric iron reductase FhuF-like transporter YpsIP31758_2445 PF04183 IucA / IucC family YpsIP31758_2447 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YpsIP31758_2448 PF00282 Pyridoxal-dependent decarboxylase conserved domain YpsIP31758_2449 PF11575 FhuF 2Fe-2S C-terminal domain YpsIP31758_2449 PF06276 Ferric iron reductase FhuF-like transporter YpsIP31758_2450 PF00571 CBS domain YpsIP31758_2450 PF03471 Transporter associated domain YpsIP31758_2450 PF03741 Integral membrane protein TerC family YpsIP31758_2451 PF05170 AsmA family YpsIP31758_2452 PF00692 dUTPase YpsIP31758_2453 PF00485 Phosphoribulokinase / Uridine kinase family YpsIP31758_2454 PF10609 NUBPL iron-transfer P-loop NTPase YpsIP31758_2455 PF09334 tRNA synthetases class I (M) YpsIP31758_2455 PF01588 Putative tRNA binding domain YpsIP31758_2459 PF07690 Major Facilitator Superfamily YpsIP31758_2460 PF03788 LrgA family YpsIP31758_2461 PF04172 LrgB-like family YpsIP31758_2462 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YpsIP31758_2462 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YpsIP31758_2463 PF00390 Malic enzyme, N-terminal domain YpsIP31758_2463 PF03949 Malic enzyme, NAD binding domain YpsIP31758_2464 PF02698 DUF218 domain YpsIP31758_2465 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_2466 PF00005 ABC transporter YpsIP31758_2467 PF13407 Periplasmic binding protein domain YpsIP31758_2469 PF04235 Protein of unknown function (DUF418) YpsIP31758_2470 PF01227 GTP cyclohydrolase I YpsIP31758_2471 PF06779 Uncharacterised MFS-type transporter YbfB YpsIP31758_2472 PF03466 LysR substrate binding domain YpsIP31758_2472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_2473 PF00107 Zinc-binding dehydrogenase YpsIP31758_2473 PF08240 Alcohol dehydrogenase GroES-like domain YpsIP31758_2474 PF00756 Putative esterase YpsIP31758_2477 PF13533 Biotin-lipoyl like YpsIP31758_2478 PF00005 ABC transporter YpsIP31758_2480 PF03454 MoeA C-terminal region (domain IV) YpsIP31758_2480 PF00994 Probable molybdopterin binding domain YpsIP31758_2480 PF03453 MoeA N-terminal region (domain I and II) YpsIP31758_2481 PF00899 ThiF family YpsIP31758_2483 PF00005 ABC transporter YpsIP31758_2483 PF12848 ABC transporter YpsIP31758_2505 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_2505 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_2505 PF17871 AAA lid domain YpsIP31758_2505 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_2507 PF00691 OmpA family YpsIP31758_2507 PF05736 OprF membrane domain YpsIP31758_2512 PF00698 Acyl transferase domain YpsIP31758_2513 PF00550 Phosphopantetheine attachment site YpsIP31758_2516 PF00378 Enoyl-CoA hydratase/isomerase YpsIP31758_2518 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YpsIP31758_2518 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YpsIP31758_2520 PF02801 Beta-ketoacyl synthase, C-terminal domain YpsIP31758_2520 PF00109 Beta-ketoacyl synthase, N-terminal domain YpsIP31758_2521 PF07977 FabA-like domain YpsIP31758_2529 PF04358 DsrC like protein YpsIP31758_2530 PF00708 Acylphosphatase YpsIP31758_2531 PF10672 S-adenosylmethionine-dependent methyltransferase YpsIP31758_2531 PF17785 PUA-like domain YpsIP31758_2532 PF08755 Hemimethylated DNA-binding protein YccV like YpsIP31758_2533 PF13380 CoA binding domain YpsIP31758_2534 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YpsIP31758_2535 PF02142 MGS-like domain YpsIP31758_2536 PF13361 UvrD-like helicase C-terminal domain YpsIP31758_2536 PF12462 DNA helicase IV / RNA helicase N terminal YpsIP31758_2536 PF00580 UvrD/REP helicase N-terminal domain YpsIP31758_2537 PF03733 Inner membrane component domain YpsIP31758_2538 PF12805 FUSC-like inner membrane protein yccS YpsIP31758_2539 PF04993 TfoX N-terminal domain YpsIP31758_2539 PF04994 TfoX C-terminal domain YpsIP31758_2540 PF03846 Cell division inhibitor SulA YpsIP31758_2542 PF01389 OmpA-like transmembrane domain YpsIP31758_2542 PF00691 OmpA family YpsIP31758_2543 PF01797 Transposase IS200 like YpsIP31758_2544 PF17414 MatP C-terminal ribbon-helix-helix domain YpsIP31758_2544 PF06303 MatP N-terminal domain YpsIP31758_2545 PF05362 Lon protease (S16) C-terminal proteolytic domain YpsIP31758_2545 PF13654 AAA domain YpsIP31758_2546 PF07977 FabA-like domain YpsIP31758_2547 PF00109 Beta-ketoacyl synthase, N-terminal domain YpsIP31758_2547 PF02801 Beta-ketoacyl synthase, C-terminal domain YpsIP31758_2548 PF03886 ABC-type transport auxiliary lipoprotein component YpsIP31758_2549 PF02470 MlaD protein YpsIP31758_2550 PF04403 Paraquat-inducible protein A YpsIP31758_2551 PF00005 ABC transporter YpsIP31758_2551 PF12848 ABC transporter YpsIP31758_2551 PF16326 ABC transporter C-terminal domain YpsIP31758_2552 PF01170 Putative RNA methylase family UPF0020 YpsIP31758_2552 PF10672 S-adenosylmethionine-dependent methyltransferase YpsIP31758_2552 PF02926 THUMP domain YpsIP31758_2553 PF03473 MOSC domain YpsIP31758_2553 PF03476 MOSC N-terminal beta barrel domain YpsIP31758_2553 PF00111 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_2554 PF07126 Cell-division protein ZapC YpsIP31758_2555 PF01180 Dihydroorotate dehydrogenase YpsIP31758_2556 PF01433 Peptidase family M1 domain YpsIP31758_2556 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YpsIP31758_2556 PF11940 Domain of unknown function (DUF3458) Ig-like fold YpsIP31758_2557 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YpsIP31758_2557 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YpsIP31758_2558 PF00152 tRNA synthetases class II (D, K and N) YpsIP31758_2558 PF01336 OB-fold nucleic acid binding domain YpsIP31758_2559 PF00267 Gram-negative porin YpsIP31758_2560 PF00155 Aminotransferase class I and II YpsIP31758_2561 PF00753 Metallo-beta-lactamase superfamily YpsIP31758_2562 PF05951 Bacterial protein of unknown function (DUF882) YpsIP31758_2563 PF03734 L,D-transpeptidase catalytic domain YpsIP31758_2563 PF01471 Putative peptidoglycan binding domain YpsIP31758_2565 PF04310 MukB N-terminal YpsIP31758_2565 PF16330 MukB hinge domain YpsIP31758_2566 PF04288 MukE-like family YpsIP31758_2567 PF03882 MukF winged-helix domain YpsIP31758_2567 PF17192 MukF middle domain YpsIP31758_2567 PF17193 MukF C-terminal domain YpsIP31758_2570 PF01636 Phosphotransferase enzyme family YpsIP31758_2571 PF02348 Cytidylyltransferase YpsIP31758_2572 PF03966 Trm112p-like protein YpsIP31758_2574 PF00313 'Cold-shock' DNA-binding domain YpsIP31758_2575 PF07063 Domain of unknown function (DUF1338) YpsIP31758_2576 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YpsIP31758_2577 PF00005 ABC transporter YpsIP31758_2577 PF00664 ABC transporter transmembrane region YpsIP31758_2578 PF00753 Metallo-beta-lactamase superfamily YpsIP31758_2578 PF03772 Competence protein YpsIP31758_2579 PF00216 Bacterial DNA-binding protein YpsIP31758_2580 PF00575 S1 RNA binding domain YpsIP31758_2581 PF02224 Cytidylate kinase YpsIP31758_2582 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YpsIP31758_2583 PF00266 Aminotransferase class-V YpsIP31758_2586 PF17763 Glutaminase/Asparaginase C-terminal domain YpsIP31758_2586 PF00710 Asparaginase, N-terminal YpsIP31758_2587 PF18381 YcaO cyclodehydratase C-terminal domain YpsIP31758_2587 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YpsIP31758_2588 PF01226 Formate/nitrite transporter YpsIP31758_2589 PF02901 Pyruvate formate lyase-like YpsIP31758_2589 PF01228 Glycine radical YpsIP31758_2591 PF04055 Radical SAM superfamily YpsIP31758_2592 PF07690 Major Facilitator Superfamily YpsIP31758_2593 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YpsIP31758_2593 PF02403 Seryl-tRNA synthetase N-terminal domain YpsIP31758_2594 PF12002 MgsA AAA+ ATPase C terminal YpsIP31758_2594 PF16193 AAA C-terminal domain YpsIP31758_2594 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_2595 PF03548 Outer membrane lipoprotein carrier protein LolA YpsIP31758_2596 PF09397 Ftsk gamma domain YpsIP31758_2596 PF17854 FtsK alpha domain YpsIP31758_2596 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YpsIP31758_2596 PF01580 FtsK/SpoIIIE family YpsIP31758_2597 PF01037 Lrp/AsnC ligand binding domain YpsIP31758_2598 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_2600 PF00664 ABC transporter transmembrane region YpsIP31758_2600 PF00005 ABC transporter YpsIP31758_2601 PF00664 ABC transporter transmembrane region YpsIP31758_2601 PF00005 ABC transporter YpsIP31758_2603 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YpsIP31758_2604 PF01176 Translation initiation factor 1A / IF-1 YpsIP31758_2606 PF17871 AAA lid domain YpsIP31758_2606 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_2606 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_2606 PF02861 Clp amino terminal domain, pathogenicity island component YpsIP31758_2606 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_2607 PF02617 ATP-dependent Clp protease adaptor protein ClpS YpsIP31758_2609 PF00313 'Cold-shock' DNA-binding domain YpsIP31758_2610 PF00005 ABC transporter YpsIP31758_2610 PF12704 MacB-like periplasmic core domain YpsIP31758_2610 PF02687 FtsX-like permease family YpsIP31758_2611 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_2613 PF04393 Protein of unknown function (DUF535) YpsIP31758_2614 PF11398 Protein of unknown function (DUF2813) YpsIP31758_2616 PF03956 Lysine exporter LysO YpsIP31758_2617 PF03063 Prismane/CO dehydrogenase family YpsIP31758_2618 PF00175 Oxidoreductase NAD-binding domain YpsIP31758_2618 PF00970 Oxidoreductase FAD-binding domain YpsIP31758_2618 PF00111 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_2619 PF00205 Thiamine pyrophosphate enzyme, central domain YpsIP31758_2619 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YpsIP31758_2619 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YpsIP31758_2620 PF01212 Beta-eliminating lyase YpsIP31758_2621 PF13460 NAD(P)H-binding YpsIP31758_2621 PF11066 Protein of unknown function (DUF2867) YpsIP31758_2622 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_2623 PF12883 Protein of unknown function (DUF3828) YpsIP31758_2624 PF01817 Chorismate mutase type II YpsIP31758_2625 PF00005 ABC transporter YpsIP31758_2626 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_2627 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2628 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2630 PF00892 EamA-like transporter family YpsIP31758_2631 PF10100 Staphylopine dehydrogenase YpsIP31758_2632 PF03059 Nicotianamine synthase protein YpsIP31758_2633 PF00005 ABC transporter YpsIP31758_2634 PF01032 FecCD transport family YpsIP31758_2639 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_2640 PF05958 tRNA (Uracil-5-)-methyltransferase YpsIP31758_2641 PF10767 Protein of unknown function (DUF2593) YpsIP31758_2642 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2643 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2644 PF08402 TOBE domain YpsIP31758_2644 PF00005 ABC transporter YpsIP31758_2645 PF13416 Bacterial extracellular solute-binding protein YpsIP31758_2646 PF10722 Putative bacterial sensory transduction regulator YpsIP31758_2647 PF07214 Protein of unknown function (DUF1418) YpsIP31758_2648 PF00462 Glutaredoxin YpsIP31758_2649 PF02080 TrkA-C domain YpsIP31758_2649 PF06826 Predicted Permease Membrane Region YpsIP31758_2651 PF01569 PAP2 superfamily YpsIP31758_2652 PF01791 DeoC/LacD family aldolase YpsIP31758_2653 PF00455 DeoR C terminal sensor domain YpsIP31758_2653 PF08220 DeoR-like helix-turn-helix domain YpsIP31758_2659 PF07943 Penicillin-binding protein 5, C-terminal domain YpsIP31758_2659 PF00768 D-alanyl-D-alanine carboxypeptidase YpsIP31758_2660 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2661 PF09383 NIL domain YpsIP31758_2661 PF00005 ABC transporter YpsIP31758_2662 PF03180 NLPA lipoprotein YpsIP31758_2665 PF13417 Glutathione S-transferase, N-terminal domain YpsIP31758_2665 PF00043 Glutathione S-transferase, C-terminal domain YpsIP31758_2666 PF00593 TonB dependent receptor YpsIP31758_2666 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_2667 PF00005 ABC transporter YpsIP31758_2668 PF01032 FecCD transport family YpsIP31758_2670 PF00324 Amino acid permease YpsIP31758_2672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_2672 PF03466 LysR substrate binding domain YpsIP31758_2674 PF03601 Conserved hypothetical protein 698 YpsIP31758_2675 PF01261 Xylose isomerase-like TIM barrel YpsIP31758_2676 PF00577 Outer membrane usher protein YpsIP31758_2676 PF13954 PapC N-terminal domain YpsIP31758_2676 PF13953 PapC C-terminal domain YpsIP31758_2677 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_2677 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_2679 PF17550 Family of unknown function YpsIP31758_2680 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_2681 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YpsIP31758_2681 PF02378 Phosphotransferase system, EIIC YpsIP31758_2682 PF00294 pfkB family carbohydrate kinase YpsIP31758_2683 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YpsIP31758_2683 PF00381 PTS HPr component phosphorylation site YpsIP31758_2686 PF00293 NUDIX domain YpsIP31758_2686 PF13344 Haloacid dehalogenase-like hydrolase YpsIP31758_2687 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_2688 PF00005 ABC transporter YpsIP31758_2690 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YpsIP31758_2691 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YpsIP31758_2691 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_2692 PF00171 Aldehyde dehydrogenase family YpsIP31758_2694 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YpsIP31758_2694 PF01842 ACT domain YpsIP31758_2694 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YpsIP31758_2696 PF03692 Putative zinc- or iron-chelating domain YpsIP31758_2697 PF03222 Tryptophan/tyrosine permease family YpsIP31758_2698 PF01132 Elongation factor P (EF-P) OB domain YpsIP31758_2698 PF09285 Elongation factor P, C-terminal YpsIP31758_2698 PF08207 Elongation factor P (EF-P) KOW-like domain YpsIP31758_2699 PF03786 D-mannonate dehydratase (UxuA) YpsIP31758_2702 PF08125 Mannitol dehydrogenase C-terminal domain YpsIP31758_2702 PF01232 Mannitol dehydrogenase Rossmann domain YpsIP31758_2703 PF07729 FCD domain YpsIP31758_2703 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_2705 PF02492 CobW/HypB/UreG, nucleotide-binding domain YpsIP31758_2705 PF07683 Cobalamin synthesis protein cobW C-terminal domain YpsIP31758_2706 PF01569 PAP2 superfamily YpsIP31758_2707 PF00877 NlpC/P60 family YpsIP31758_2710 PF12792 CSS motif domain associated with EAL YpsIP31758_2710 PF00563 EAL domain YpsIP31758_2711 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YpsIP31758_2712 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2713 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2713 PF12911 N-terminal TM domain of oligopeptide transport permease C YpsIP31758_2714 PF00005 ABC transporter YpsIP31758_2714 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YpsIP31758_2715 PF13989 YejG-like protein YpsIP31758_2717 PF07690 Major Facilitator Superfamily YpsIP31758_2718 PF00849 RNA pseudouridylate synthase YpsIP31758_2718 PF01479 S4 domain YpsIP31758_2719 PF00271 Helicase conserved C-terminal domain YpsIP31758_2719 PF04851 Type III restriction enzyme, res subunit YpsIP31758_2720 PF01386 Ribosomal L25p family YpsIP31758_2721 PF04245 37-kD nucleoid-associated bacterial protein YpsIP31758_2722 PF07208 Protein of unknown function (DUF1414) YpsIP31758_2723 PF11893 Domain of unknown function (DUF3413) YpsIP31758_2723 PF00884 Sulfatase YpsIP31758_2725 PF05638 Type VI secretion system effector, Hcp YpsIP31758_2729 PF00232 Glycosyl hydrolase family 1 YpsIP31758_2730 PF01380 SIS domain YpsIP31758_2730 PF01418 Helix-turn-helix domain, rpiR family YpsIP31758_2731 PF07484 Phage Tail Collar Domain YpsIP31758_2733 PF04865 Baseplate J-like protein YpsIP31758_2741 PF04984 Phage tail sheath protein subtilisin-like domain YpsIP31758_2741 PF17482 Phage tail sheath C-terminal domain YpsIP31758_2745 PF01261 Xylose isomerase-like TIM barrel YpsIP31758_2746 PF00455 DeoR C terminal sensor domain YpsIP31758_2746 PF08220 DeoR-like helix-turn-helix domain YpsIP31758_2747 PF00596 Class II Aldolase and Adducin N-terminal domain YpsIP31758_2748 PF07005 Sugar-binding N-terminal domain YpsIP31758_2748 PF17042 Nucleotide-binding C-terminal domain YpsIP31758_2749 PF06530 Phage antitermination protein Q YpsIP31758_2750 PF00717 Peptidase S24-like YpsIP31758_2750 PF01381 Helix-turn-helix YpsIP31758_2751 PF06183 DinI-like family YpsIP31758_2753 PF02743 Cache domain YpsIP31758_2753 PF00672 HAMP domain YpsIP31758_2753 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YpsIP31758_2754 PF12706 Beta-lactamase superfamily domain YpsIP31758_2758 PF00144 Beta-lactamase YpsIP31758_2761 PF00267 Gram-negative porin YpsIP31758_2762 PF07690 Major Facilitator Superfamily YpsIP31758_2763 PF16359 RcsD-ABL domain YpsIP31758_2763 PF01627 Hpt domain YpsIP31758_2763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_2764 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_2764 PF00072 Response regulator receiver domain YpsIP31758_2765 PF09456 RcsC Alpha-Beta-Loop (ABL) YpsIP31758_2765 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_2765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_2765 PF00072 Response regulator receiver domain YpsIP31758_2767 PF03989 DNA gyrase C-terminal domain, beta-propeller YpsIP31758_2767 PF00521 DNA gyrase/topoisomerase IV, subunit A YpsIP31758_2769 PF02867 Ribonucleotide reductase, barrel domain YpsIP31758_2769 PF00317 Ribonucleotide reductase, all-alpha domain YpsIP31758_2769 PF03477 ATP cone domain YpsIP31758_2770 PF00268 Ribonucleotide reductase, small chain YpsIP31758_2771 PF00111 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_2772 PF03974 Ecotin YpsIP31758_2773 PF00994 Probable molybdopterin binding domain YpsIP31758_2774 PF03222 Tryptophan/tyrosine permease family YpsIP31758_2775 PF07437 YfaZ precursor YpsIP31758_2776 PF06628 Catalase-related immune-responsive YpsIP31758_2776 PF00199 Catalase YpsIP31758_2777 PF13307 Helicase C-terminal domain YpsIP31758_2777 PF06733 DEAD_2 YpsIP31758_2778 PF00267 Gram-negative porin YpsIP31758_2779 PF00892 EamA-like transporter family YpsIP31758_2781 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YpsIP31758_2781 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YpsIP31758_2781 PF01276 Orn/Lys/Arg decarboxylase, major domain YpsIP31758_2782 PF13520 Amino acid permease YpsIP31758_2783 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2784 PF00005 ABC transporter YpsIP31758_2785 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2786 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YpsIP31758_2787 PF00581 Rhodanese-like domain YpsIP31758_2790 PF00005 ABC transporter YpsIP31758_2791 PF00005 ABC transporter YpsIP31758_2792 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_2793 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_2794 PF00158 Sigma-54 interaction domain YpsIP31758_2794 PF13188 PAS domain YpsIP31758_2794 PF02954 Bacterial regulatory protein, Fis family YpsIP31758_2795 PF07308 Protein of unknown function (DUF1456) YpsIP31758_2796 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2797 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2799 PF00005 ABC transporter YpsIP31758_2800 PF04226 Transglycosylase associated protein YpsIP31758_2803 PF01844 HNH endonuclease YpsIP31758_2804 PF01928 CYTH domain YpsIP31758_2805 PF01565 FAD binding domain YpsIP31758_2805 PF09330 D-lactate dehydrogenase, membrane binding YpsIP31758_2806 PF00768 D-alanyl-D-alanine carboxypeptidase YpsIP31758_2808 PF01207 Dihydrouridine synthase (Dus) YpsIP31758_2810 PF00270 DEAD/DEAH box helicase YpsIP31758_2810 PF00271 Helicase conserved C-terminal domain YpsIP31758_2811 PF00440 Bacterial regulatory proteins, tetR family YpsIP31758_2811 PF09209 Tetracyclin repressor-like, C-terminal domain YpsIP31758_2812 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_2813 PF00005 ABC transporter YpsIP31758_2818 PF03466 LysR substrate binding domain YpsIP31758_2818 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_2819 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YpsIP31758_2820 PF00158 Sigma-54 interaction domain YpsIP31758_2820 PF02954 Bacterial regulatory protein, Fis family YpsIP31758_2820 PF00072 Response regulator receiver domain YpsIP31758_2821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_2821 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_2822 PF13801 Heavy-metal resistance YpsIP31758_2823 PF03825 Nucleoside H+ symporter YpsIP31758_2824 PF01048 Phosphorylase superfamily YpsIP31758_2826 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_2826 PF03466 LysR substrate binding domain YpsIP31758_2828 PF02028 BCCT, betaine/carnitine/choline family transporter YpsIP31758_2829 PF00440 Bacterial regulatory proteins, tetR family YpsIP31758_2829 PF13977 BetI-type transcriptional repressor, C-terminal YpsIP31758_2830 PF00171 Aldehyde dehydrogenase family YpsIP31758_2831 PF00732 GMC oxidoreductase YpsIP31758_2831 PF05199 GMC oxidoreductase YpsIP31758_2832 PF01027 Inhibitor of apoptosis-promoting Bax1 YpsIP31758_2833 PF02391 MoaE protein YpsIP31758_2834 PF02597 ThiS family YpsIP31758_2835 PF01967 MoaC family YpsIP31758_2836 PF04055 Radical SAM superfamily YpsIP31758_2836 PF06463 Molybdenum Cofactor Synthesis C YpsIP31758_2837 PF01933 Uncharacterised protein family UPF0052 YpsIP31758_2838 PF09905 DNA-binding protein VF530 YpsIP31758_2839 PF17757 UvrB interaction domain YpsIP31758_2839 PF12344 Ultra-violet resistance protein B YpsIP31758_2839 PF00271 Helicase conserved C-terminal domain YpsIP31758_2839 PF04851 Type III restriction enzyme, res subunit YpsIP31758_2839 PF02151 UvrB/uvrC motif YpsIP31758_2842 PF08241 Methyltransferase domain YpsIP31758_2843 PF00155 Aminotransferase class I and II YpsIP31758_2844 PF06968 Biotin and Thiamin Synthesis associated domain YpsIP31758_2844 PF04055 Radical SAM superfamily YpsIP31758_2845 PF00202 Aminotransferase class-III YpsIP31758_2846 PF10282 Lactonase, 7-bladed beta-propeller YpsIP31758_2848 PF03459 TOBE domain YpsIP31758_2848 PF00005 ABC transporter YpsIP31758_2849 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2851 PF10766 Multidrug efflux pump-associated protein AcrZ YpsIP31758_2852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_2852 PF03459 TOBE domain YpsIP31758_2853 PF00005 ABC transporter YpsIP31758_2855 PF16363 GDP-mannose 4,6 dehydratase YpsIP31758_2856 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YpsIP31758_2856 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YpsIP31758_2857 PF10509 Galactokinase galactose-binding signature YpsIP31758_2857 PF00288 GHMP kinases N terminal domain YpsIP31758_2857 PF08544 GHMP kinases C terminal YpsIP31758_2858 PF01263 Aldose 1-epimerase YpsIP31758_2861 PF00300 Histidine phosphatase superfamily (branch 1) YpsIP31758_2862 PF00793 DAHP synthetase I family YpsIP31758_2863 PF01545 Cation efflux family YpsIP31758_2864 PF04973 Nicotinamide mononucleotide transporter YpsIP31758_2865 PF02445 Quinolinate synthetase A protein YpsIP31758_2866 PF13174 Tetratricopeptide repeat YpsIP31758_2866 PF16331 TolA binding protein trimerisation YpsIP31758_2867 PF00691 OmpA family YpsIP31758_2868 PF04052 TolB amino-terminal domain YpsIP31758_2868 PF07676 WD40-like Beta Propeller Repeat YpsIP31758_2869 PF06519 TolA C-terminal YpsIP31758_2869 PF06519 TolA C-terminal YpsIP31758_2870 PF02472 Biopolymer transport protein ExbD/TolR YpsIP31758_2871 PF01618 MotA/TolQ/ExbB proton channel family YpsIP31758_2872 PF03061 Thioesterase superfamily YpsIP31758_2873 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YpsIP31758_2874 PF08173 Membrane bound YbgT-like protein YpsIP31758_2875 PF02322 Cytochrome bd terminal oxidase subunit II YpsIP31758_2876 PF01654 Cytochrome bd terminal oxidase subunit I YpsIP31758_2877 PF01797 Transposase IS200 like YpsIP31758_2878 PF02629 CoA binding domain YpsIP31758_2878 PF00549 CoA-ligase YpsIP31758_2879 PF00549 CoA-ligase YpsIP31758_2879 PF08442 ATP-grasp domain YpsIP31758_2880 PF02817 e3 binding domain YpsIP31758_2880 PF00364 Biotin-requiring enzyme YpsIP31758_2880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YpsIP31758_2881 PF16870 2-oxoglutarate dehydrogenase C-terminal YpsIP31758_2881 PF16078 2-oxoglutarate dehydrogenase N-terminus YpsIP31758_2881 PF00676 Dehydrogenase E1 component YpsIP31758_2881 PF02779 Transketolase, pyrimidine binding domain YpsIP31758_2882 PF13085 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_2883 PF00890 FAD binding domain YpsIP31758_2883 PF02910 Fumarate reductase flavoprotein C-term YpsIP31758_2884 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YpsIP31758_2885 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YpsIP31758_2886 PF00285 Citrate synthase, C-terminal domain YpsIP31758_2887 PF01025 GrpE YpsIP31758_2888 PF01513 ATP-NAD kinase YpsIP31758_2889 PF02463 RecF/RecN/SMC N terminal domain YpsIP31758_2890 PF04355 SmpA / OmlA family YpsIP31758_2891 PF03658 RnfH family Ubiquitin YpsIP31758_2892 PF03364 Polyketide cyclase / dehydrase and lipid transport YpsIP31758_2893 PF01668 SmpB protein YpsIP31758_2895 PF00589 Phage integrase family YpsIP31758_2895 PF13356 Arm DNA-binding domain YpsIP31758_2896 PF01527 Transposase YpsIP31758_2898 PF12697 Alpha/beta hydrolase family YpsIP31758_2899 PF01402 Ribbon-helix-helix protein, copG family YpsIP31758_2901 PF00258 Flavodoxin YpsIP31758_2902 PF01475 Ferric uptake regulator family YpsIP31758_2903 PF03173 Putative carbohydrate binding domain YpsIP31758_2903 PF00728 Glycosyl hydrolase family 20, catalytic domain YpsIP31758_2903 PF02838 Glycosyl hydrolase family 20, domain 2 YpsIP31758_2903 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YpsIP31758_2905 PF03573 outer membrane porin, OprD family YpsIP31758_2907 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YpsIP31758_2907 PF00749 tRNA synthetases class I (E and Q), catalytic domain YpsIP31758_2908 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YpsIP31758_2908 PF02378 Phosphotransferase system, EIIC YpsIP31758_2908 PF00367 phosphotransferase system, EIIB YpsIP31758_2909 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YpsIP31758_2910 PF01979 Amidohydrolase family YpsIP31758_2911 PF01047 MarR family YpsIP31758_2911 PF00480 ROK family YpsIP31758_2912 PF13344 Haloacid dehalogenase-like hydrolase YpsIP31758_2913 PF00733 Asparagine synthase YpsIP31758_2913 PF13537 Glutamine amidotransferase domain YpsIP31758_2914 PF01494 FAD binding domain YpsIP31758_2915 PF01938 TRAM domain YpsIP31758_2915 PF04055 Radical SAM superfamily YpsIP31758_2915 PF00919 Uncharacterized protein family UPF0004 YpsIP31758_2916 PF02562 PhoH-like protein YpsIP31758_2917 PF02130 Uncharacterized protein family UPF0054 YpsIP31758_2918 PF00571 CBS domain YpsIP31758_2918 PF03471 Transporter associated domain YpsIP31758_2919 PF00795 Carbon-nitrogen hydrolase YpsIP31758_2920 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_2921 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2922 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_2923 PF00005 ABC transporter YpsIP31758_2924 PF07295 Zinc-ribbon containing domain YpsIP31758_2926 PF08264 Anticodon-binding domain of tRNA YpsIP31758_2926 PF13603 Leucyl-tRNA synthetase, Domain 2 YpsIP31758_2926 PF00133 tRNA synthetases class I (I, L, M and V) YpsIP31758_2927 PF04390 Lipopolysaccharide-assembly YpsIP31758_2928 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YpsIP31758_2928 PF06144 DNA polymerase III, delta subunit YpsIP31758_2929 PF01467 Cytidylyltransferase-like YpsIP31758_2946 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain YpsIP31758_2946 PF00589 Phage integrase family YpsIP31758_2948 PF02590 Predicted SPOUT methyltransferase YpsIP31758_2949 PF03717 Penicillin-binding Protein dimerisation domain YpsIP31758_2949 PF00905 Penicillin binding protein transpeptidase domain YpsIP31758_2950 PF01098 Cell cycle protein YpsIP31758_2951 PF05036 Sporulation related domain YpsIP31758_2951 PF03330 Lytic transglycolase YpsIP31758_2952 PF07943 Penicillin-binding protein 5, C-terminal domain YpsIP31758_2952 PF00768 D-alanyl-D-alanine carboxypeptidase YpsIP31758_2953 PF04359 Protein of unknown function (DUF493) YpsIP31758_2954 PF03099 Biotin/lipoate A/B protein ligase family YpsIP31758_2955 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YpsIP31758_2955 PF04055 Radical SAM superfamily YpsIP31758_2956 PF02416 mttA/Hcf106 family YpsIP31758_2957 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YpsIP31758_2958 PF00313 'Cold-shock' DNA-binding domain YpsIP31758_2959 PF00313 'Cold-shock' DNA-binding domain YpsIP31758_2960 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_2965 PF00005 ABC transporter YpsIP31758_2965 PF00664 ABC transporter transmembrane region YpsIP31758_2967 PF04962 KduI/IolB family YpsIP31758_2968 PF01261 Xylose isomerase-like TIM barrel YpsIP31758_2969 PF00294 pfkB family carbohydrate kinase YpsIP31758_2970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YpsIP31758_2970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YpsIP31758_2971 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_2972 PF00005 ABC transporter YpsIP31758_2973 PF13407 Periplasmic binding protein domain YpsIP31758_2974 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YpsIP31758_2974 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YpsIP31758_2976 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YpsIP31758_2976 PF00205 Thiamine pyrophosphate enzyme, central domain YpsIP31758_2976 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YpsIP31758_2977 PF00171 Aldehyde dehydrogenase family YpsIP31758_2979 PF17962 Bacterial macroglobulin domain 6 YpsIP31758_2979 PF00207 Alpha-2-macroglobulin family YpsIP31758_2979 PF07703 Alpha-2-macroglobulin bait region domain YpsIP31758_2979 PF01835 MG2 domain YpsIP31758_2979 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YpsIP31758_2979 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YpsIP31758_2979 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YpsIP31758_2980 PF00912 Transglycosylase YpsIP31758_2980 PF06832 Penicillin-Binding Protein C-terminus Family YpsIP31758_2980 PF00905 Penicillin binding protein transpeptidase domain YpsIP31758_2981 PF13693 Winged helix-turn-helix DNA-binding YpsIP31758_2983 PF05638 Type VI secretion system effector, Hcp YpsIP31758_2985 PF03212 Pertactin YpsIP31758_2985 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_2985 PF03797 Autotransporter beta-domain YpsIP31758_2985 PF16168 Adhesin of bacterial autotransporter system, probable stalk YpsIP31758_2988 PF08007 Cupin superfamily protein YpsIP31758_2990 PF01479 S4 domain YpsIP31758_2990 PF00849 RNA pseudouridylate synthase YpsIP31758_2998 PF00248 Aldo/keto reductase family YpsIP31758_2999 PF00248 Aldo/keto reductase family YpsIP31758_3000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_3000 PF03466 LysR substrate binding domain YpsIP31758_3002 PF00782 Dual specificity phosphatase, catalytic domain YpsIP31758_3003 PF12147 Putative methyltransferase YpsIP31758_3003 PF12146 Serine aminopeptidase, S33 YpsIP31758_3004 PF01553 Acyltransferase YpsIP31758_3006 PF01066 CDP-alcohol phosphatidyltransferase YpsIP31758_3012 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YpsIP31758_3012 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YpsIP31758_3014 PF01406 tRNA synthetases class I (C) catalytic domain YpsIP31758_3014 PF09190 DALR domain YpsIP31758_3015 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YpsIP31758_3016 PF00149 Calcineurin-like phosphoesterase YpsIP31758_3017 PF00731 AIR carboxylase YpsIP31758_3018 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YpsIP31758_3018 PF02222 ATP-grasp domain YpsIP31758_3020 PF00005 ABC transporter YpsIP31758_3021 PF13472 GDSL-like Lipase/Acylhydrolase family YpsIP31758_3022 PF00106 short chain dehydrogenase YpsIP31758_3023 PF00085 Thioredoxin YpsIP31758_3024 PF01145 SPFH domain / Band 7 family YpsIP31758_3024 PF16200 C-terminal region of band_7 YpsIP31758_3025 PF01957 NfeD-like C-terminal, partner-binding YpsIP31758_3026 PF13411 MerR HTH family regulatory protein YpsIP31758_3027 PF00403 Heavy-metal-associated domain YpsIP31758_3028 PF01963 TraB family YpsIP31758_3029 PF04073 Aminoacyl-tRNA editing domain YpsIP31758_3032 PF00149 Calcineurin-like phosphoesterase YpsIP31758_3032 PF02872 5'-nucleotidase, C-terminal domain YpsIP31758_3033 PF07690 Major Facilitator Superfamily YpsIP31758_3034 PF02254 TrkA-N domain YpsIP31758_3034 PF00999 Sodium/hydrogen exchanger family YpsIP31758_3035 PF00294 pfkB family carbohydrate kinase YpsIP31758_3036 PF02706 Chain length determinant protein YpsIP31758_3037 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YpsIP31758_3037 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YpsIP31758_3037 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YpsIP31758_3037 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YpsIP31758_3038 PF00535 Glycosyl transferase family 2 YpsIP31758_3039 PF01050 Mannose-6-phosphate isomerase YpsIP31758_3039 PF00483 Nucleotidyl transferase YpsIP31758_3040 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_3041 PF16363 GDP-mannose 4,6 dehydratase YpsIP31758_3042 PF13439 Glycosyltransferase Family 4 YpsIP31758_3042 PF00534 Glycosyl transferases group 1 YpsIP31758_3048 PF01370 NAD dependent epimerase/dehydratase family YpsIP31758_3049 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YpsIP31758_3050 PF16363 GDP-mannose 4,6 dehydratase YpsIP31758_3051 PF00483 Nucleotidyl transferase YpsIP31758_3052 PF00175 Oxidoreductase NAD-binding domain YpsIP31758_3052 PF00111 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_3052 PF00970 Oxidoreductase FAD-binding domain YpsIP31758_3053 PF00762 Ferrochelatase YpsIP31758_3054 PF05191 Adenylate kinase, active site lid YpsIP31758_3055 PF00183 Hsp90 protein YpsIP31758_3055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_3057 PF02132 RecR protein YpsIP31758_3057 PF13662 Toprim domain YpsIP31758_3058 PF02575 YbaB/EbfC DNA-binding family YpsIP31758_3059 PF12169 DNA polymerase III subunits gamma and tau domain III YpsIP31758_3059 PF12170 DNA polymerase III tau subunit V interacting with alpha YpsIP31758_3059 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YpsIP31758_3060 PF00156 Phosphoribosyl transferase domain YpsIP31758_3063 PF10689 Protein of unknown function (DUF2496) YpsIP31758_3064 PF00924 Mechanosensitive ion channel YpsIP31758_3064 PF12794 Mechanosensitive ion channel inner membrane domain 1 YpsIP31758_3064 PF12795 Mechanosensitive ion channel porin domain YpsIP31758_3065 PF02635 DsrE/DsrF-like family YpsIP31758_3066 PF08361 MAATS-type transcriptional repressor, C-terminal region YpsIP31758_3066 PF00440 Bacterial regulatory proteins, tetR family YpsIP31758_3067 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_3067 PF00529 HlyD membrane-fusion protein of T1SS YpsIP31758_3068 PF00873 AcrB/AcrD/AcrF family YpsIP31758_3069 PF01197 Ribosomal protein L31 YpsIP31758_3070 PF00444 Ribosomal protein L36 YpsIP31758_3072 PF10757 Biofilm formation regulator YbaJ YpsIP31758_3073 PF05321 Haemolysin expression modulating protein YpsIP31758_3074 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YpsIP31758_3075 PF09619 Type III secretion system lipoprotein chaperone (YscW) YpsIP31758_3077 PF00909 Ammonium Transporter Family YpsIP31758_3078 PF00543 Nitrogen regulatory protein P-II YpsIP31758_3079 PF00664 ABC transporter transmembrane region YpsIP31758_3079 PF00005 ABC transporter YpsIP31758_3080 PF00664 ABC transporter transmembrane region YpsIP31758_3080 PF00005 ABC transporter YpsIP31758_3081 PF13404 AsnC-type helix-turn-helix domain YpsIP31758_3081 PF01037 Lrp/AsnC ligand binding domain YpsIP31758_3082 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_3084 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YpsIP31758_3084 PF12793 Sugar transport-related sRNA regulator N-term YpsIP31758_3085 PF06508 Queuosine biosynthesis protein QueC YpsIP31758_3088 PF13145 PPIC-type PPIASE domain YpsIP31758_3089 PF00216 Bacterial DNA-binding protein YpsIP31758_3090 PF02190 ATP-dependent protease La (LON) substrate-binding domain YpsIP31758_3090 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_3090 PF05362 Lon protease (S16) C-terminal proteolytic domain YpsIP31758_3091 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_3091 PF06689 ClpX C4-type zinc finger YpsIP31758_3091 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_3092 PF00574 Clp protease YpsIP31758_3093 PF05698 Bacterial trigger factor protein (TF) C-terminus YpsIP31758_3093 PF05697 Bacterial trigger factor protein (TF) YpsIP31758_3093 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YpsIP31758_3094 PF01722 BolA-like protein YpsIP31758_3095 PF03923 Uncharacterized lipoprotein YpsIP31758_3095 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YpsIP31758_3096 PF07690 Major Facilitator Superfamily YpsIP31758_3097 PF03502 Nucleoside-specific channel-forming protein, Tsx YpsIP31758_3098 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YpsIP31758_3098 PF06481 COX Aromatic Rich Motif YpsIP31758_3099 PF00115 Cytochrome C and Quinol oxidase polypeptide I YpsIP31758_3100 PF00510 Cytochrome c oxidase subunit III YpsIP31758_3101 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YpsIP31758_3102 PF01040 UbiA prenyltransferase family YpsIP31758_3103 PF07690 Major Facilitator Superfamily YpsIP31758_3104 PF04461 Protein of unknown function (DUF520) YpsIP31758_3106 PF02558 Ketopantoate reductase PanE/ApbA YpsIP31758_3106 PF08546 Ketopantoate reductase PanE/ApbA C terminal YpsIP31758_3107 PF01965 DJ-1/PfpI family YpsIP31758_3108 PF02926 THUMP domain YpsIP31758_3108 PF02568 Thiamine biosynthesis protein (ThiI) YpsIP31758_3110 PF02609 Exonuclease VII small subunit YpsIP31758_3111 PF00348 Polyprenyl synthetase YpsIP31758_3112 PF02780 Transketolase, C-terminal domain YpsIP31758_3112 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YpsIP31758_3112 PF02779 Transketolase, pyrimidine binding domain YpsIP31758_3113 PF04608 Phosphatidylglycerophosphatase A YpsIP31758_3114 PF02769 AIR synthase related protein, C-terminal domain YpsIP31758_3114 PF00586 AIR synthase related protein, N-terminal domain YpsIP31758_3115 PF01029 NusB family YpsIP31758_3116 PF00885 6,7-dimethyl-8-ribityllumazine synthase YpsIP31758_3117 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YpsIP31758_3117 PF01872 RibD C-terminal domain YpsIP31758_3118 PF03477 ATP cone domain YpsIP31758_3120 PF07549 SecD/SecF GG Motif YpsIP31758_3120 PF02355 Protein export membrane protein YpsIP31758_3121 PF07549 SecD/SecF GG Motif YpsIP31758_3121 PF02355 Protein export membrane protein YpsIP31758_3121 PF13721 SecD export protein N-terminal TM region YpsIP31758_3122 PF02699 Preprotein translocase subunit YpsIP31758_3123 PF01702 Queuine tRNA-ribosyltransferase YpsIP31758_3124 PF02547 Queuosine biosynthesis protein YpsIP31758_3125 PF04336 Acyl carrier protein phosphodiesterase YpsIP31758_3126 PF00578 AhpC/TSA family YpsIP31758_3126 PF10417 C-terminal domain of 1-Cys peroxiredoxin YpsIP31758_3127 PF01797 Transposase IS200 like YpsIP31758_3131 PF00128 Alpha amylase, catalytic domain YpsIP31758_3131 PF02903 Alpha amylase, N-terminal ig-like domain YpsIP31758_3132 PF00324 Amino acid permease YpsIP31758_3133 PF05525 Branched-chain amino acid transport protein YpsIP31758_3134 PF12849 PBP superfamily domain YpsIP31758_3135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_3135 PF11808 Phosphate regulon sensor protein PhoR YpsIP31758_3135 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_3135 PF00989 PAS fold YpsIP31758_3136 PF00072 Response regulator receiver domain YpsIP31758_3136 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_3138 PF12320 Type 5 capsule protein repressor C-terminal domain YpsIP31758_3138 PF00149 Calcineurin-like phosphoesterase YpsIP31758_3139 PF13476 AAA domain YpsIP31758_3140 PF00480 ROK family YpsIP31758_3141 PF04381 Putative exonuclease, RdgC YpsIP31758_3142 PF06865 Pyrimidine/purine nucleoside phosphorylase YpsIP31758_3143 PF01202 Shikimate kinase YpsIP31758_3145 PF08241 Methyltransferase domain YpsIP31758_3148 PF07317 Flagellar regulator YcgR YpsIP31758_3148 PF07238 PilZ domain YpsIP31758_3149 PF00171 Aldehyde dehydrogenase family YpsIP31758_3150 PF00696 Amino acid kinase family YpsIP31758_3150 PF01472 PUA domain YpsIP31758_3151 PF07417 Sigma factor-binding transcriptional regulator Crl YpsIP31758_3153 PF00156 Phosphoribosyl transferase domain YpsIP31758_3155 PF03466 LysR substrate binding domain YpsIP31758_3155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_3156 PF01546 Peptidase family M20/M25/M40 YpsIP31758_3156 PF07687 Peptidase dimerisation domain YpsIP31758_3157 PF11798 IMS family HHH motif YpsIP31758_3157 PF00817 impB/mucB/samB family YpsIP31758_3157 PF11799 impB/mucB/samB family C-terminal domain YpsIP31758_3158 PF03009 Glycerophosphoryl diester phosphodiesterase family YpsIP31758_3160 PF02424 ApbE family YpsIP31758_3161 PF00111 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_3161 PF00970 Oxidoreductase FAD-binding domain YpsIP31758_3161 PF00175 Oxidoreductase NAD-binding domain YpsIP31758_3162 PF02508 Rnf-Nqr subunit, membrane protein YpsIP31758_3163 PF02508 Rnf-Nqr subunit, membrane protein YpsIP31758_3164 PF04205 FMN-binding domain YpsIP31758_3165 PF03116 NQR2, RnfD, RnfE family YpsIP31758_3166 PF11973 NQRA C-terminal domain YpsIP31758_3166 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YpsIP31758_3168 PF13230 Glutamine amidotransferases class-II YpsIP31758_3169 PF03734 L,D-transpeptidase catalytic domain YpsIP31758_3170 PF13580 SIS domain YpsIP31758_3171 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YpsIP31758_3171 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YpsIP31758_3171 PF09317 Domain of unknown function (DUF1974) YpsIP31758_3173 PF18254 HMW1 domain 2 YpsIP31758_3173 PF18071 HMW1C N-terminal YpsIP31758_3174 PF05860 haemagglutination activity domain YpsIP31758_3175 PF08479 POTRA domain, ShlB-type YpsIP31758_3175 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YpsIP31758_3178 PF01636 Phosphotransferase enzyme family YpsIP31758_3179 PF01008 Initiation factor 2 subunit family YpsIP31758_3180 PF03079 ARD/ARD' family YpsIP31758_3182 PF00596 Class II Aldolase and Adducin N-terminal domain YpsIP31758_3183 PF00155 Aminotransferase class I and II YpsIP31758_3184 PF00795 Carbon-nitrogen hydrolase YpsIP31758_3185 PF01546 Peptidase family M20/M25/M40 YpsIP31758_3185 PF07687 Peptidase dimerisation domain YpsIP31758_3186 PF00266 Aminotransferase class-V YpsIP31758_3187 PF00005 ABC transporter YpsIP31758_3189 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_3190 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_3194 PF01425 Amidase YpsIP31758_3197 PF07690 Major Facilitator Superfamily YpsIP31758_3198 PF03591 AzlC protein YpsIP31758_3199 PF05437 Branched-chain amino acid transport protein (AzlD) YpsIP31758_3200 PF01047 MarR family YpsIP31758_3201 PF00529 HlyD membrane-fusion protein of T1SS YpsIP31758_3201 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_3202 PF07690 Major Facilitator Superfamily YpsIP31758_3203 PF00588 SpoU rRNA Methylase family YpsIP31758_3203 PF08032 RNA 2'-O ribose methyltransferase substrate binding YpsIP31758_3204 PF00085 Thioredoxin YpsIP31758_3206 PF00583 Acetyltransferase (GNAT) family YpsIP31758_3206 PF13380 CoA binding domain YpsIP31758_3206 PF13607 Succinyl-CoA ligase like flavodoxin domain YpsIP31758_3207 PF13091 PLD-like domain YpsIP31758_3208 PF10043 Predicted periplasmic lipoprotein (DUF2279) YpsIP31758_3212 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_3212 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_3212 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_3212 PF17871 AAA lid domain YpsIP31758_3212 PF02861 Clp amino terminal domain, pathogenicity island component YpsIP31758_3214 PF01479 S4 domain YpsIP31758_3214 PF00849 RNA pseudouridylate synthase YpsIP31758_3215 PF13525 Outer membrane lipoprotein YpsIP31758_3216 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YpsIP31758_3218 PF00800 Prephenate dehydratase YpsIP31758_3218 PF01817 Chorismate mutase type II YpsIP31758_3219 PF01817 Chorismate mutase type II YpsIP31758_3219 PF02153 Prephenate dehydrogenase YpsIP31758_3220 PF00793 DAHP synthetase I family YpsIP31758_3221 PF00072 Response regulator receiver domain YpsIP31758_3221 PF04397 LytTr DNA-binding domain YpsIP31758_3222 PF03605 Anaerobic c4-dicarboxylate membrane transporter YpsIP31758_3223 PF04338 Protein of unknown function, DUF481 YpsIP31758_3224 PF01797 Transposase IS200 like YpsIP31758_3225 PF01245 Ribosomal protein L19 YpsIP31758_3226 PF01746 tRNA (Guanine-1)-methyltransferase YpsIP31758_3227 PF01782 RimM N-terminal domain YpsIP31758_3227 PF05239 PRC-barrel domain YpsIP31758_3228 PF00886 Ribosomal protein S16 YpsIP31758_3230 PF00448 SRP54-type protein, GTPase domain YpsIP31758_3230 PF02881 SRP54-type protein, helical bundle domain YpsIP31758_3230 PF02978 Signal peptide binding domain YpsIP31758_3231 PF01578 Cytochrome C assembly protein YpsIP31758_3232 PF01595 Cyclin M transmembrane N-terminal domain YpsIP31758_3232 PF03471 Transporter associated domain YpsIP31758_3232 PF00571 CBS domain YpsIP31758_3233 PF02664 S-Ribosylhomocysteinase (LuxS) YpsIP31758_3234 PF04262 Glutamate-cysteine ligase YpsIP31758_3235 PF09335 SNARE associated Golgi protein YpsIP31758_3236 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_3237 PF02599 Global regulator protein family YpsIP31758_3238 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YpsIP31758_3238 PF01411 tRNA synthetases class II (A) YpsIP31758_3238 PF02272 DHHA1 domain YpsIP31758_3239 PF02631 RecX family YpsIP31758_3240 PF00154 recA bacterial DNA recombination protein YpsIP31758_3241 PF02464 Competence-damaged protein YpsIP31758_3242 PF07690 Major Facilitator Superfamily YpsIP31758_3247 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YpsIP31758_3247 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_3248 PF02779 Transketolase, pyrimidine binding domain YpsIP31758_3248 PF02780 Transketolase, C-terminal domain YpsIP31758_3249 PF00456 Transketolase, thiamine diphosphate binding domain YpsIP31758_3250 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_3251 PF00005 ABC transporter YpsIP31758_3254 PF00141 Peroxidase YpsIP31758_3255 PF07361 Cytochrome b562 YpsIP31758_3256 PF01292 Prokaryotic cytochrome b561 YpsIP31758_3258 PF02613 Nitrate reductase delta subunit YpsIP31758_3259 PF04976 DMSO reductase anchor subunit (DmsC) YpsIP31758_3260 PF12800 4Fe-4S binding domain YpsIP31758_3260 PF13247 4Fe-4S dicluster domain YpsIP31758_3261 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YpsIP31758_3261 PF00384 Molybdopterin oxidoreductase YpsIP31758_3261 PF01568 Molydopterin dinucleotide binding domain YpsIP31758_3262 PF00596 Class II Aldolase and Adducin N-terminal domain YpsIP31758_3264 PF08220 DeoR-like helix-turn-helix domain YpsIP31758_3264 PF00455 DeoR C terminal sensor domain YpsIP31758_3266 PF00005 ABC transporter YpsIP31758_3267 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_3268 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_3269 PF01261 Xylose isomerase-like TIM barrel YpsIP31758_3270 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YpsIP31758_3270 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_3271 PF05681 Fumarate hydratase (Fumerase) YpsIP31758_3271 PF05683 Fumarase C-terminus YpsIP31758_3273 PF00557 Metallopeptidase family M24 YpsIP31758_3276 PF00593 TonB dependent receptor YpsIP31758_3276 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_3278 PF14376 Haem-binding domain YpsIP31758_3278 PF03150 Di-haem cytochrome c peroxidase YpsIP31758_3278 PF00034 Cytochrome c YpsIP31758_3279 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_3281 PF01022 Bacterial regulatory protein, arsR family YpsIP31758_3282 PF02040 Arsenical pump membrane protein YpsIP31758_3284 PF04198 Putative sugar-binding domain YpsIP31758_3284 PF13936 Helix-turn-helix domain YpsIP31758_3285 PF02734 DAK2 domain YpsIP31758_3286 PF02733 Dak1 domain YpsIP31758_3288 PF00107 Zinc-binding dehydrogenase YpsIP31758_3288 PF08240 Alcohol dehydrogenase GroES-like domain YpsIP31758_3289 PF02502 Ribose/Galactose Isomerase YpsIP31758_3292 PF01624 MutS domain I YpsIP31758_3292 PF05190 MutS family domain IV YpsIP31758_3292 PF05188 MutS domain II YpsIP31758_3292 PF00488 MutS domain V YpsIP31758_3292 PF05192 MutS domain III YpsIP31758_3293 PF04545 Sigma-70, region 4 YpsIP31758_3293 PF04539 Sigma-70 region 3 YpsIP31758_3293 PF04542 Sigma-70 region 2 YpsIP31758_3293 PF00140 Sigma-70 factor, region 1.2 YpsIP31758_3294 PF01551 Peptidase family M23 YpsIP31758_3294 PF01476 LysM domain YpsIP31758_3296 PF01975 Survival protein SurE YpsIP31758_3297 PF01142 tRNA pseudouridine synthase D (TruD) YpsIP31758_3298 PF02542 YgbB family YpsIP31758_3299 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YpsIP31758_3300 PF04977 Septum formation initiator YpsIP31758_3301 PF12084 Protein of unknown function (DUF3561) YpsIP31758_3303 PF00009 Elongation factor Tu GTP binding domain YpsIP31758_3304 PF01507 Phosphoadenosine phosphosulfate reductase family YpsIP31758_3305 PF14824 Sirohaem biosynthesis protein central YpsIP31758_3305 PF10414 Sirohaem synthase dimerisation region YpsIP31758_3305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YpsIP31758_3309 PF01507 Phosphoadenosine phosphosulfate reductase family YpsIP31758_3310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YpsIP31758_3310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YpsIP31758_3311 PF00258 Flavodoxin YpsIP31758_3311 PF00667 FAD binding domain YpsIP31758_3311 PF00175 Oxidoreductase NAD-binding domain YpsIP31758_3312 PF01242 6-pyruvoyl tetrahydropterin synthase YpsIP31758_3313 PF04055 Radical SAM superfamily YpsIP31758_3315 PF00080 Copper/zinc superoxide dismutase (SODC) YpsIP31758_3316 PF00113 Enolase, C-terminal TIM barrel domain YpsIP31758_3316 PF03952 Enolase, N-terminal domain YpsIP31758_3317 PF06418 CTP synthase N-terminus YpsIP31758_3317 PF00117 Glutamine amidotransferase class-I YpsIP31758_3318 PF03819 MazG nucleotide pyrophosphohydrolase domain YpsIP31758_3319 PF13291 ACT domain YpsIP31758_3319 PF04607 Region found in RelA / SpoT proteins YpsIP31758_3319 PF02824 TGS domain YpsIP31758_3320 PF01938 TRAM domain YpsIP31758_3320 PF05958 tRNA (Uracil-5-)-methyltransferase YpsIP31758_3322 PF01627 Hpt domain YpsIP31758_3322 PF00072 Response regulator receiver domain YpsIP31758_3322 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_3322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_3322 PF00672 HAMP domain YpsIP31758_3322 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YpsIP31758_3323 PF00595 PDZ domain YpsIP31758_3324 PF01966 HD domain YpsIP31758_3324 PF13286 Phosphohydrolase-associated domain YpsIP31758_3325 PF01048 Phosphorylase superfamily YpsIP31758_3326 PF01497 Periplasmic binding protein YpsIP31758_3327 PF03458 UPF0126 domain YpsIP31758_3328 PF01521 Iron-sulphur cluster biosynthesis YpsIP31758_3329 PF00654 Voltage gated chloride channel YpsIP31758_3330 PF00202 Aminotransferase class-III YpsIP31758_3331 PF01032 FecCD transport family YpsIP31758_3332 PF01497 Periplasmic binding protein YpsIP31758_3333 PF00005 ABC transporter YpsIP31758_3334 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YpsIP31758_3334 PF00912 Transglycosylase YpsIP31758_3334 PF00905 Penicillin binding protein transpeptidase domain YpsIP31758_3334 PF14814 Bifunctional transglycosylase second domain YpsIP31758_3335 PF00270 DEAD/DEAH box helicase YpsIP31758_3335 PF04408 Helicase associated domain (HA2) YpsIP31758_3335 PF08482 ATP-dependent helicase C-terminal YpsIP31758_3335 PF00271 Helicase conserved C-terminal domain YpsIP31758_3336 PF02834 LigT like Phosphoesterase YpsIP31758_3337 PF17746 SfsA N-terminal OB domain YpsIP31758_3337 PF03749 Sugar fermentation stimulation protein RE domain YpsIP31758_3338 PF01258 Prokaryotic dksA/traR C4-type zinc finger YpsIP31758_3339 PF00749 tRNA synthetases class I (E and Q), catalytic domain YpsIP31758_3340 PF12627 Probable RNA and SrmB- binding site of polymerase A YpsIP31758_3340 PF12626 Polymerase A arginine-rich C-terminus YpsIP31758_3340 PF01743 Poly A polymerase head domain YpsIP31758_3341 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YpsIP31758_3343 PF02548 Ketopantoate hydroxymethyltransferase YpsIP31758_3344 PF02569 Pantoate-beta-alanine ligase YpsIP31758_3345 PF02261 Aspartate decarboxylase YpsIP31758_3346 PF01522 Polysaccharide deacetylase YpsIP31758_3348 PF01061 ABC-2 type transporter YpsIP31758_3349 PF00005 ABC transporter YpsIP31758_3350 PF00484 Carbonic anhydrase YpsIP31758_3351 PF00156 Phosphoribosyl transferase domain YpsIP31758_3352 PF10518 TAT (twin-arginine translocation) pathway signal sequence YpsIP31758_3352 PF07731 Multicopper oxidase YpsIP31758_3352 PF07732 Multicopper oxidase YpsIP31758_3352 PF00394 Multicopper oxidase YpsIP31758_3353 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YpsIP31758_3354 PF17284 Spermidine synthase tetramerisation domain YpsIP31758_3355 PF02675 S-adenosylmethionine decarboxylase YpsIP31758_3357 PF00892 EamA-like transporter family YpsIP31758_3358 PF06062 Uncharacterised protein family (UPF0231) YpsIP31758_3359 PF11791 Aconitate B N-terminal domain YpsIP31758_3359 PF06434 Aconitate hydratase 2 N-terminus YpsIP31758_3359 PF00330 Aconitase family (aconitate hydratase) YpsIP31758_3360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YpsIP31758_3360 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_3362 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YpsIP31758_3362 PF00364 Biotin-requiring enzyme YpsIP31758_3362 PF02817 e3 binding domain YpsIP31758_3363 PF17831 Pyruvate dehydrogenase E1 component middle domain YpsIP31758_3363 PF00456 Transketolase, thiamine diphosphate binding domain YpsIP31758_3364 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_3364 PF07729 FCD domain YpsIP31758_3366 PF00324 Amino acid permease YpsIP31758_3367 PF17113 Regulatory signalling modulator protein AmpE YpsIP31758_3368 PF01510 N-acetylmuramoyl-L-alanine amidase YpsIP31758_3369 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YpsIP31758_3369 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YpsIP31758_3370 PF07963 Prokaryotic N-terminal methylation motif YpsIP31758_3371 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YpsIP31758_3371 PF00437 Type II/IV secretion system protein YpsIP31758_3372 PF00482 Type II secretion system (T2SS), protein F YpsIP31758_3373 PF00478 IMP dehydrogenase / GMP reductase domain YpsIP31758_3374 PF01121 Dephospho-CoA kinase YpsIP31758_3375 PF07072 Cell division protein YpsIP31758_3376 PF03884 DNA gyrase inhibitor YacG YpsIP31758_3377 PF00293 NUDIX domain YpsIP31758_3378 PF02810 SEC-C motif YpsIP31758_3378 PF07516 SecA Wing and Scaffold domain YpsIP31758_3378 PF01043 SecA preprotein cross-linking domain YpsIP31758_3378 PF07517 SecA DEAD-like domain YpsIP31758_3379 PF06558 Secretion monitor precursor protein (SecM) YpsIP31758_3381 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YpsIP31758_3382 PF12327 FtsZ family, C-terminal domain YpsIP31758_3382 PF00091 Tubulin/FtsZ family, GTPase domain YpsIP31758_3383 PF02491 SHS2 domain inserted in FTSA YpsIP31758_3384 PF03799 Cell division protein FtsQ YpsIP31758_3384 PF08478 POTRA domain, FtsQ-type YpsIP31758_3385 PF01820 D-ala D-ala ligase N-terminus YpsIP31758_3385 PF07478 D-ala D-ala ligase C-terminus YpsIP31758_3386 PF08245 Mur ligase middle domain YpsIP31758_3386 PF02875 Mur ligase family, glutamate ligase domain YpsIP31758_3386 PF01225 Mur ligase family, catalytic domain YpsIP31758_3387 PF03033 Glycosyltransferase family 28 N-terminal domain YpsIP31758_3387 PF04101 Glycosyltransferase family 28 C-terminal domain YpsIP31758_3388 PF01098 Cell cycle protein YpsIP31758_3389 PF02875 Mur ligase family, glutamate ligase domain YpsIP31758_3389 PF08245 Mur ligase middle domain YpsIP31758_3390 PF00953 Glycosyl transferase family 4 YpsIP31758_3390 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YpsIP31758_3391 PF08245 Mur ligase middle domain YpsIP31758_3391 PF02875 Mur ligase family, glutamate ligase domain YpsIP31758_3391 PF01225 Mur ligase family, catalytic domain YpsIP31758_3392 PF01225 Mur ligase family, catalytic domain YpsIP31758_3392 PF02875 Mur ligase family, glutamate ligase domain YpsIP31758_3392 PF08245 Mur ligase middle domain YpsIP31758_3393 PF00905 Penicillin binding protein transpeptidase domain YpsIP31758_3393 PF03717 Penicillin-binding Protein dimerisation domain YpsIP31758_3394 PF04999 Cell division protein FtsL YpsIP31758_3395 PF01795 MraW methylase family YpsIP31758_3396 PF02381 MraZ protein, putative antitoxin-like YpsIP31758_3397 PF06610 L-alanine exporter YpsIP31758_3398 PF01797 Transposase IS200 like YpsIP31758_3399 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_3399 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YpsIP31758_3400 PF10369 Small subunit of acetolactate synthase YpsIP31758_3401 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YpsIP31758_3401 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YpsIP31758_3401 PF00205 Thiamine pyrophosphate enzyme, central domain YpsIP31758_3402 PF00501 AMP-binding enzyme YpsIP31758_3403 PF03466 LysR substrate binding domain YpsIP31758_3403 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_3405 PF08502 LeuA allosteric (dimerisation) domain YpsIP31758_3405 PF00682 HMGL-like YpsIP31758_3406 PF00180 Isocitrate/isopropylmalate dehydrogenase YpsIP31758_3407 PF00330 Aconitase family (aconitate hydratase) YpsIP31758_3408 PF00694 Aconitase C-terminal domain YpsIP31758_3409 PF07690 Major Facilitator Superfamily YpsIP31758_3411 PF12793 Sugar transport-related sRNA regulator N-term YpsIP31758_3411 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YpsIP31758_3413 PF01797 Transposase IS200 like YpsIP31758_3415 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_3416 PF00005 ABC transporter YpsIP31758_3417 PF09335 SNARE associated Golgi protein YpsIP31758_3418 PF00136 DNA polymerase family B YpsIP31758_3418 PF03104 DNA polymerase family B, exonuclease domain YpsIP31758_3419 PF18337 RapA N-terminal Tudor like domain YpsIP31758_3419 PF00271 Helicase conserved C-terminal domain YpsIP31758_3419 PF18339 RapA N-terminal Tudor like domain 1 YpsIP31758_3419 PF00176 SNF2 family N-terminal domain YpsIP31758_3419 PF12137 RNA polymerase recycling family C-terminal YpsIP31758_3422 PF00691 OmpA family YpsIP31758_3422 PF05736 OprF membrane domain YpsIP31758_3429 PF04717 Type VI secretion system, phage-baseplate injector YpsIP31758_3430 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_3430 PF17871 AAA lid domain YpsIP31758_3430 PF07724 AAA domain (Cdc48 subfamily) YpsIP31758_3430 PF10431 C-terminal, D2-small domain, of ClpB protein YpsIP31758_3439 PF00849 RNA pseudouridylate synthase YpsIP31758_3440 PF05099 Tellurite resistance protein TerB YpsIP31758_3440 PF00226 DnaJ domain YpsIP31758_3441 PF04453 LPS transport system D YpsIP31758_3441 PF03968 OstA-like protein YpsIP31758_3442 PF09312 SurA N-terminal domain YpsIP31758_3442 PF00639 PPIC-type PPIASE domain YpsIP31758_3443 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YpsIP31758_3444 PF00398 Ribosomal RNA adenine dimethylase YpsIP31758_3445 PF04379 ApaG domain YpsIP31758_3446 PF00149 Calcineurin-like phosphoesterase YpsIP31758_3449 PF00186 Dihydrofolate reductase YpsIP31758_3450 PF12821 Threonine/Serine exporter, ThrE YpsIP31758_3451 PF06738 Putative threonine/serine exporter YpsIP31758_3452 PF01810 LysE type translocator YpsIP31758_3453 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YpsIP31758_3453 PF02142 MGS-like domain YpsIP31758_3453 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YpsIP31758_3454 PF00117 Glutamine amidotransferase class-I YpsIP31758_3454 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YpsIP31758_3455 PF01113 Dihydrodipicolinate reductase, N-terminus YpsIP31758_3455 PF05173 Dihydrodipicolinate reductase, C-terminus YpsIP31758_3457 PF02401 LytB protein YpsIP31758_3458 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YpsIP31758_3459 PF01252 Signal peptidase (SPase) II YpsIP31758_3460 PF08264 Anticodon-binding domain of tRNA YpsIP31758_3460 PF06827 Zinc finger found in FPG and IleRS YpsIP31758_3460 PF00133 tRNA synthetases class I (I, L, M and V) YpsIP31758_3461 PF01687 Riboflavin kinase YpsIP31758_3461 PF06574 FAD synthetase YpsIP31758_3462 PF01649 Ribosomal protein S20 YpsIP31758_3463 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_3463 PF03466 LysR substrate binding domain YpsIP31758_3464 PF06965 Na+/H+ antiporter 1 YpsIP31758_3465 PF01556 DnaJ C terminal domain YpsIP31758_3465 PF00226 DnaJ domain YpsIP31758_3465 PF00684 DnaJ central domain YpsIP31758_3466 PF00012 Hsp70 protein YpsIP31758_3467 PF01184 GPR1/FUN34/yaaH family YpsIP31758_3469 PF07690 Major Facilitator Superfamily YpsIP31758_3470 PF00994 Probable molybdopterin binding domain YpsIP31758_3472 PF00923 Transaldolase/Fructose-6-phosphate aldolase YpsIP31758_3473 PF03883 Peroxide stress protein YaaA YpsIP31758_3474 PF14821 Threonine synthase N terminus YpsIP31758_3474 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_3475 PF08544 GHMP kinases C terminal YpsIP31758_3475 PF00288 GHMP kinases N terminal domain YpsIP31758_3476 PF13840 ACT domain YpsIP31758_3476 PF01842 ACT domain YpsIP31758_3476 PF00742 Homoserine dehydrogenase YpsIP31758_3476 PF00696 Amino acid kinase family YpsIP31758_3476 PF03447 Homoserine dehydrogenase, NAD binding domain YpsIP31758_3477 PF08254 Threonine leader peptide YpsIP31758_3478 PF00072 Response regulator receiver domain YpsIP31758_3478 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_3479 PF05981 CreA protein YpsIP31758_3480 PF00300 Histidine phosphatase superfamily (branch 1) YpsIP31758_3481 PF12833 Helix-turn-helix domain YpsIP31758_3481 PF06445 GyrI-like small molecule binding domain YpsIP31758_3482 PF01371 Trp repressor protein YpsIP31758_3483 PF01931 Protein of unknown function DUF84 YpsIP31758_3484 PF14718 Soluble lytic murein transglycosylase L domain YpsIP31758_3484 PF01464 Transglycosylase SLT domain YpsIP31758_3485 PF00689 Cation transporting ATPase, C-terminus YpsIP31758_3485 PF00690 Cation transporter/ATPase, N-terminus YpsIP31758_3487 PF17152 Periplasmic sensor domain YpsIP31758_3487 PF00990 Diguanylate cyclase, GGDEF domain YpsIP31758_3488 PF00691 OmpA family YpsIP31758_3489 PF00005 ABC transporter YpsIP31758_3489 PF12848 ABC transporter YpsIP31758_3491 PF13521 AAA domain YpsIP31758_3491 PF01381 Helix-turn-helix YpsIP31758_3492 PF18073 Rubredoxin metal binding domain YpsIP31758_3493 PF18429 Domain of unknown function (DUF5609) YpsIP31758_3494 PF10144 Bacterial virulence factor haemolysin YpsIP31758_3495 PF01048 Phosphorylase superfamily YpsIP31758_3496 PF01676 Metalloenzyme superfamily YpsIP31758_3497 PF02885 Glycosyl transferase family, helical bundle domain YpsIP31758_3497 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YpsIP31758_3497 PF00591 Glycosyl transferase family, a/b domain YpsIP31758_3498 PF01791 DeoC/LacD family aldolase YpsIP31758_3499 PF01773 Na+ dependent nucleoside transporter N-terminus YpsIP31758_3499 PF07670 Nucleoside recognition YpsIP31758_3499 PF07662 Na+ dependent nucleoside transporter C-terminus YpsIP31758_3500 PF01026 TatD related DNase YpsIP31758_3501 PF01734 Patatin-like phospholipase YpsIP31758_3502 PF07043 Protein of unknown function (DUF1328) YpsIP31758_3503 PF04972 BON domain YpsIP31758_3504 PF03144 Elongation factor Tu domain 2 YpsIP31758_3504 PF00009 Elongation factor Tu GTP binding domain YpsIP31758_3504 PF16658 Class II release factor RF3, C-terminal domain YpsIP31758_3505 PF00583 Acetyltransferase (GNAT) family YpsIP31758_3506 PF03603 DNA polymerase III psi subunit YpsIP31758_3507 PF08468 Methyltransferase small domain N-terminal YpsIP31758_3507 PF05175 Methyltransferase small domain YpsIP31758_3508 PF07256 Protein of unknown function (DUF1435) YpsIP31758_3509 PF00990 Diguanylate cyclase, GGDEF domain YpsIP31758_3511 PF01095 Pectinesterase YpsIP31758_3512 PF00873 AcrB/AcrD/AcrF family YpsIP31758_3513 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_3516 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YpsIP31758_3518 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YpsIP31758_3518 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_3519 PF00325 Bacterial regulatory proteins, crp family YpsIP31758_3519 PF04198 Putative sugar-binding domain YpsIP31758_3521 PF00005 ABC transporter YpsIP31758_3522 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_3523 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_3524 PF13407 Periplasmic binding protein domain YpsIP31758_3525 PF01791 DeoC/LacD family aldolase YpsIP31758_3526 PF03992 Antibiotic biosynthesis monooxygenase YpsIP31758_3527 PF10696 Protein of unknown function (DUF2501) YpsIP31758_3528 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YpsIP31758_3528 PF00381 PTS HPr component phosphorylation site YpsIP31758_3528 PF05524 PEP-utilising enzyme, N-terminal YpsIP31758_3528 PF00391 PEP-utilising enzyme, mobile domain YpsIP31758_3528 PF02896 PEP-utilising enzyme, TIM barrel domain YpsIP31758_3530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YpsIP31758_3531 PF12833 Helix-turn-helix domain YpsIP31758_3532 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YpsIP31758_3534 PF05987 Bacterial protein of unknown function (DUF898) YpsIP31758_3536 PF12161 HsdM N-terminal domain YpsIP31758_3536 PF02384 N-6 DNA Methylase YpsIP31758_3538 PF18766 SWI2/SNF2 ATPase YpsIP31758_3538 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YpsIP31758_3538 PF12008 Type I restriction and modification enzyme - subunit R C terminal YpsIP31758_3540 PF13356 Arm DNA-binding domain YpsIP31758_3540 PF00589 Phage integrase family YpsIP31758_3541 PF03739 Lipopolysaccharide export system permease LptF/LptG YpsIP31758_3542 PF03739 Lipopolysaccharide export system permease LptF/LptG YpsIP31758_3543 PF00883 Cytosol aminopeptidase family, catalytic domain YpsIP31758_3543 PF02789 Cytosol aminopeptidase family, N-terminal domain YpsIP31758_3544 PF04364 DNA polymerase III chi subunit, HolC YpsIP31758_3545 PF00133 tRNA synthetases class I (I, L, M and V) YpsIP31758_3545 PF08264 Anticodon-binding domain of tRNA YpsIP31758_3545 PF10458 Valyl tRNA synthetase tRNA binding arm YpsIP31758_3546 PF00583 Acetyltransferase (GNAT) family YpsIP31758_3548 PF06877 Regulator of ribonuclease activity B YpsIP31758_3549 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YpsIP31758_3549 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YpsIP31758_3550 PF04074 YhcH/YjgK/YiaL YpsIP31758_3552 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_3553 PF12911 N-terminal TM domain of oligopeptide transport permease C YpsIP31758_3553 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_3554 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YpsIP31758_3554 PF00005 ABC transporter YpsIP31758_3555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YpsIP31758_3555 PF00005 ABC transporter YpsIP31758_3556 PF03477 ATP cone domain YpsIP31758_3556 PF13597 Anaerobic ribonucleoside-triphosphate reductase YpsIP31758_3559 PF00392 Bacterial regulatory proteins, gntR family YpsIP31758_3559 PF07702 UTRA domain YpsIP31758_3560 PF06754 Phosphonate metabolism protein PhnG YpsIP31758_3561 PF05845 Bacterial phosphonate metabolism protein (PhnH) YpsIP31758_3562 PF05861 Bacterial phosphonate metabolism protein (PhnI) YpsIP31758_3563 PF06007 Phosphonate metabolism protein PhnJ YpsIP31758_3564 PF00005 ABC transporter YpsIP31758_3565 PF00005 ABC transporter YpsIP31758_3566 PF07969 Amidohydrolase family YpsIP31758_3568 PF12706 Beta-lactamase superfamily domain YpsIP31758_3569 PF13460 NAD(P)H-binding YpsIP31758_3572 PF17912 MalK OB fold domain YpsIP31758_3572 PF03459 TOBE domain YpsIP31758_3572 PF00005 ABC transporter YpsIP31758_3573 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_3575 PF13416 Bacterial extracellular solute-binding protein YpsIP31758_3578 PF01541 GIY-YIG catalytic domain YpsIP31758_3579 PF13508 Acetyltransferase (GNAT) domain YpsIP31758_3584 PF02321 Outer membrane efflux protein YpsIP31758_3584 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YpsIP31758_3585 PF00873 AcrB/AcrD/AcrF family YpsIP31758_3586 PF00529 HlyD membrane-fusion protein of T1SS YpsIP31758_3586 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YpsIP31758_3587 PF00296 Luciferase-like monooxygenase YpsIP31758_3588 PF01381 Helix-turn-helix YpsIP31758_3590 PF00270 DEAD/DEAH box helicase YpsIP31758_3590 PF12343 Cold shock protein DEAD box A YpsIP31758_3590 PF00271 Helicase conserved C-terminal domain YpsIP31758_3590 PF03880 DbpA RNA binding domain YpsIP31758_3591 PF07719 Tetratricopeptide repeat YpsIP31758_3591 PF13181 Tetratricopeptide repeat YpsIP31758_3592 PF03725 3' exoribonuclease family, domain 2 YpsIP31758_3592 PF00575 S1 RNA binding domain YpsIP31758_3592 PF00013 KH domain YpsIP31758_3592 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YpsIP31758_3592 PF01138 3' exoribonuclease family, domain 1 YpsIP31758_3593 PF00312 Ribosomal protein S15 YpsIP31758_3594 PF01509 TruB family pseudouridylate synthase (N terminal domain) YpsIP31758_3594 PF16198 tRNA pseudouridylate synthase B C-terminal domain YpsIP31758_3594 PF09157 Pseudouridine synthase II TruB, C-terminal YpsIP31758_3595 PF02033 Ribosome-binding factor A YpsIP31758_3596 PF04760 Translation initiation factor IF-2, N-terminal region YpsIP31758_3596 PF11987 Translation-initiation factor 2 YpsIP31758_3596 PF08364 Bacterial translation initiation factor IF-2 associated region YpsIP31758_3596 PF00009 Elongation factor Tu GTP binding domain YpsIP31758_3596 PF03144 Elongation factor Tu domain 2 YpsIP31758_3597 PF08529 NusA N-terminal domain YpsIP31758_3597 PF00575 S1 RNA binding domain YpsIP31758_3597 PF13184 NusA-like KH domain YpsIP31758_3598 PF17384 RimP C-terminal SH3 domain YpsIP31758_3598 PF02576 RimP N-terminal domain YpsIP31758_3599 PF03840 Preprotein translocase SecG subunit YpsIP31758_3600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YpsIP31758_3600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YpsIP31758_3600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YpsIP31758_3600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YpsIP31758_3601 PF00809 Pterin binding enzyme YpsIP31758_3602 PF01434 Peptidase family M41 YpsIP31758_3602 PF17862 AAA+ lid domain YpsIP31758_3602 PF06480 FtsH Extracellular YpsIP31758_3602 PF00004 ATPase family associated with various cellular activities (AAA) YpsIP31758_3603 PF01728 FtsJ-like methyltransferase YpsIP31758_3604 PF01985 CRS1 / YhbY (CRM) domain YpsIP31758_3605 PF03449 Transcription elongation factor, N-terminal YpsIP31758_3605 PF01272 Transcription elongation factor, GreA/GreB, C-term YpsIP31758_3606 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YpsIP31758_3607 PF00072 Response regulator receiver domain YpsIP31758_3607 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_3608 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_3608 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_3608 PF00672 HAMP domain YpsIP31758_3609 PF01926 50S ribosome-binding GTPase YpsIP31758_3609 PF01018 GTP1/OBG YpsIP31758_3610 PF00892 EamA-like transporter family YpsIP31758_3611 PF01016 Ribosomal L27 protein YpsIP31758_3612 PF00829 Ribosomal prokaryotic L21 protein YpsIP31758_3613 PF00348 Polyprenyl synthetase YpsIP31758_3615 PF13693 Winged helix-turn-helix DNA-binding YpsIP31758_3616 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YpsIP31758_3616 PF00056 lactate/malate dehydrogenase, NAD binding domain YpsIP31758_3617 PF02863 Arginine repressor, C-terminal domain YpsIP31758_3617 PF01316 Arginine repressor, DNA binding domain YpsIP31758_3620 PF02875 Mur ligase family, glutamate ligase domain YpsIP31758_3620 PF08245 Mur ligase middle domain YpsIP31758_3620 PF01225 Mur ligase family, catalytic domain YpsIP31758_3621 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YpsIP31758_3622 PF00719 Inorganic pyrophosphatase YpsIP31758_3623 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YpsIP31758_3624 PF04357 TamB, inner membrane protein subunit of TAM complex YpsIP31758_3625 PF07244 Surface antigen variable number repeat YpsIP31758_3625 PF01103 Surface antigen YpsIP31758_3625 PF17243 POTRA domain TamA domain 1 YpsIP31758_3626 PF01625 Peptide methionine sulfoxide reductase YpsIP31758_3627 PF03471 Transporter associated domain YpsIP31758_3627 PF01595 Cyclin M transmembrane N-terminal domain YpsIP31758_3627 PF00571 CBS domain YpsIP31758_3628 PF06526 Protein of unknown function (DUF1107) YpsIP31758_3629 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YpsIP31758_3630 PF00459 Inositol monophosphatase family YpsIP31758_3631 PF00149 Calcineurin-like phosphoesterase YpsIP31758_3631 PF02872 5'-nucleotidase, C-terminal domain YpsIP31758_3632 PF04405 Domain of Unknown function (DUF542) YpsIP31758_3632 PF01814 Hemerythrin HHE cation binding domain YpsIP31758_3633 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YpsIP31758_3633 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YpsIP31758_3634 PF04225 Opacity-associated protein A LysM-like domain YpsIP31758_3634 PF08525 Opacity-associated protein A N-terminal motif YpsIP31758_3636 PF01281 Ribosomal protein L9, N-terminal domain YpsIP31758_3636 PF03948 Ribosomal protein L9, C-terminal domain YpsIP31758_3637 PF01084 Ribosomal protein S18 YpsIP31758_3638 PF00436 Single-strand binding protein family YpsIP31758_3639 PF01250 Ribosomal protein S6 YpsIP31758_3640 PF00326 Prolyl oligopeptidase family YpsIP31758_3642 PF07338 Protein of unknown function (DUF1471) YpsIP31758_3643 PF18158 Adaptive response protein AidB N-terminal domain YpsIP31758_3643 PF02770 Acyl-CoA dehydrogenase, middle domain YpsIP31758_3643 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YpsIP31758_3644 PF00588 SpoU rRNA Methylase family YpsIP31758_3644 PF08032 RNA 2'-O ribose methyltransferase substrate binding YpsIP31758_3646 PF08206 Ribonuclease B OB domain YpsIP31758_3646 PF08461 Ribonuclease R winged-helix domain YpsIP31758_3646 PF17876 Cold shock domain YpsIP31758_3646 PF00575 S1 RNA binding domain YpsIP31758_3646 PF00773 RNB domain YpsIP31758_3647 PF02082 Transcriptional regulator YpsIP31758_3648 PF00709 Adenylosuccinate synthetase YpsIP31758_3649 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YpsIP31758_3650 PF01145 SPFH domain / Band 7 family YpsIP31758_3651 PF12221 Bacterial membrane protein N terminal YpsIP31758_3651 PF01145 SPFH domain / Band 7 family YpsIP31758_3652 PF13167 GTP-binding GTPase N-terminal YpsIP31758_3652 PF01926 50S ribosome-binding GTPase YpsIP31758_3652 PF16360 GTP-binding GTPase Middle Region YpsIP31758_3653 PF17209 Hfq protein YpsIP31758_3655 PF01119 DNA mismatch repair protein, C-terminal domain YpsIP31758_3655 PF08676 MutL C terminal dimerisation domain YpsIP31758_3656 PF01520 N-acetylmuramoyl-L-alanine amidase YpsIP31758_3657 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YpsIP31758_3658 PF03853 YjeF-related protein N-terminus YpsIP31758_3658 PF01256 Carbohydrate kinase YpsIP31758_3660 PF08331 Domain of unknown function (DUF1730) YpsIP31758_3661 PF00929 Exonuclease YpsIP31758_3662 PF03193 RsgA GTPase YpsIP31758_3663 PF02666 Phosphatidylserine decarboxylase YpsIP31758_3664 PF12794 Mechanosensitive ion channel inner membrane domain 1 YpsIP31758_3664 PF00924 Mechanosensitive ion channel YpsIP31758_3664 PF12795 Mechanosensitive ion channel porin domain YpsIP31758_3665 PF00152 tRNA synthetases class II (D, K and N) YpsIP31758_3667 PF00890 FAD binding domain YpsIP31758_3667 PF02910 Fumarate reductase flavoprotein C-term YpsIP31758_3668 PF13085 2Fe-2S iron-sulfur cluster binding domain YpsIP31758_3668 PF13183 4Fe-4S dicluster domain YpsIP31758_3669 PF02300 Fumarate reductase subunit C YpsIP31758_3670 PF02313 Fumarate reductase subunit D YpsIP31758_3671 PF00893 Small Multidrug Resistance protein YpsIP31758_3672 PF01132 Elongation factor P (EF-P) OB domain YpsIP31758_3672 PF09285 Elongation factor P, C-terminal YpsIP31758_3672 PF08207 Elongation factor P (EF-P) KOW-like domain YpsIP31758_3673 PF04055 Radical SAM superfamily YpsIP31758_3674 PF13698 Domain of unknown function (DUF4156) YpsIP31758_3675 PF00118 TCP-1/cpn60 chaperonin family YpsIP31758_3676 PF00166 Chaperonin 10 Kd subunit YpsIP31758_3677 PF04186 FxsA cytoplasmic membrane protein YpsIP31758_3678 PF10415 Fumarase C C-terminus YpsIP31758_3678 PF00206 Lyase YpsIP31758_3679 PF03605 Anaerobic c4-dicarboxylate membrane transporter YpsIP31758_3680 PF03091 CutA1 divalent ion tolerance protein YpsIP31758_3681 PF11412 Disulphide bond corrector protein DsbC YpsIP31758_3681 PF02683 Cytochrome C biogenesis protein transmembrane region YpsIP31758_3682 PF01568 Molydopterin dinucleotide binding domain YpsIP31758_3682 PF00384 Molybdopterin oxidoreductase YpsIP31758_3682 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YpsIP31758_3683 PF13247 4Fe-4S dicluster domain YpsIP31758_3683 PF12800 4Fe-4S binding domain YpsIP31758_3684 PF13247 4Fe-4S dicluster domain YpsIP31758_3684 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_3684 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YpsIP31758_3686 PF02899 Phage integrase, N-terminal SAM-like domain YpsIP31758_3686 PF00589 Phage integrase family YpsIP31758_3692 PF05593 RHS Repeat YpsIP31758_3692 PF03527 RHS protein YpsIP31758_3695 PF05593 RHS Repeat YpsIP31758_3695 PF03527 RHS protein YpsIP31758_3703 PF13166 AAA domain YpsIP31758_3726 PF04754 Putative transposase, YhgA-like YpsIP31758_3727 PF04917 Bacterial shufflon protein, N-terminal constant region YpsIP31758_3731 PF00437 Type II/IV secretion system protein YpsIP31758_3747 PF03796 DnaB-like helicase C terminal domain YpsIP31758_3747 PF00772 DnaB-like helicase N terminal domain YpsIP31758_3752 PF06379 L-rhamnose-proton symport protein (RhaT) YpsIP31758_3753 PF02311 AraC-like ligand binding domain YpsIP31758_3753 PF12833 Helix-turn-helix domain YpsIP31758_3754 PF02311 AraC-like ligand binding domain YpsIP31758_3754 PF12833 Helix-turn-helix domain YpsIP31758_3755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_3755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YpsIP31758_3756 PF06134 L-rhamnose isomerase (RhaA) YpsIP31758_3757 PF00596 Class II Aldolase and Adducin N-terminal domain YpsIP31758_3758 PF00465 Iron-containing alcohol dehydrogenase YpsIP31758_3759 PF05336 L-rhamnose mutarotase YpsIP31758_3760 PF00436 Single-strand binding protein family YpsIP31758_3761 PF17755 UvrA DNA-binding domain YpsIP31758_3761 PF00005 ABC transporter YpsIP31758_3761 PF17760 UvrA interaction domain YpsIP31758_3762 PF04237 YjbR YpsIP31758_3763 PF00155 Aminotransferase class I and II YpsIP31758_3764 PF00842 Alanine racemase, C-terminal domain YpsIP31758_3764 PF01168 Alanine racemase, N-terminal domain YpsIP31758_3765 PF03796 DnaB-like helicase C terminal domain YpsIP31758_3765 PF00772 DnaB-like helicase N terminal domain YpsIP31758_3766 PF08240 Alcohol dehydrogenase GroES-like domain YpsIP31758_3766 PF00107 Zinc-binding dehydrogenase YpsIP31758_3767 PF09583 Phage shock protein G (Phageshock_PspG) YpsIP31758_3768 PF01207 Dihydrouridine synthase (Dus) YpsIP31758_3769 PF01475 Ferric uptake regulator family YpsIP31758_3770 PF01726 LexA DNA binding domain YpsIP31758_3770 PF00717 Peptidase S24-like YpsIP31758_3771 PF01219 Prokaryotic diacylglycerol kinase YpsIP31758_3772 PF01553 Acyltransferase YpsIP31758_3773 PF01040 UbiA prenyltransferase family YpsIP31758_3774 PF04345 Chorismate lyase YpsIP31758_3775 PF12951 Passenger-associated-transport-repeat YpsIP31758_3776 PF08031 Berberine and berberine like YpsIP31758_3776 PF01565 FAD binding domain YpsIP31758_3781 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_3782 PF00577 Outer membrane usher protein YpsIP31758_3782 PF13953 PapC C-terminal domain YpsIP31758_3782 PF13954 PapC N-terminal domain YpsIP31758_3784 PF02342 TerD domain YpsIP31758_3785 PF02342 TerD domain YpsIP31758_3786 PF03741 Integral membrane protein TerC family YpsIP31758_3787 PF05099 Tellurite resistance protein TerB YpsIP31758_3788 PF02342 TerD domain YpsIP31758_3789 PF02342 TerD domain YpsIP31758_3793 PF11202 Phosphoribosyl transferase (PRTase) YpsIP31758_3793 PF15608 PELOTA RNA binding domain YpsIP31758_3797 PF04055 Radical SAM superfamily YpsIP31758_3798 PF06228 Haem utilisation ChuX/HutX YpsIP31758_3799 PF13460 NAD(P)H-binding YpsIP31758_3800 PF10636 Hemin uptake protein hemP YpsIP31758_3801 PF07715 TonB-dependent Receptor Plug Domain YpsIP31758_3801 PF00593 TonB dependent receptor YpsIP31758_3802 PF05171 Haemin-degrading HemS.ChuX domain YpsIP31758_3803 PF01497 Periplasmic binding protein YpsIP31758_3804 PF01032 FecCD transport family YpsIP31758_3805 PF00005 ABC transporter YpsIP31758_3806 PF01053 Cys/Met metabolism PLP-dependent enzyme YpsIP31758_3807 PF03222 Tryptophan/tyrosine permease family YpsIP31758_3808 PF03466 LysR substrate binding domain YpsIP31758_3808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YpsIP31758_3809 PF01206 Sulfurtransferase TusA YpsIP31758_3810 PF04143 Sulphur transport YpsIP31758_3811 PF01312 FlhB HrpN YscU SpaS Family YpsIP31758_3812 PF01311 Bacterial export proteins, family 1 YpsIP31758_3813 PF01313 Bacterial export proteins, family 3 YpsIP31758_3814 PF00813 FliP family YpsIP31758_3818 PF18269 T3SS EscN ATPase C-terminal domain YpsIP31758_3818 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YpsIP31758_3819 PF00771 FHIPEP family YpsIP31758_3822 PF01514 Secretory protein of YscJ/FliF family YpsIP31758_3827 PF14525 AraC-binding-like domain YpsIP31758_3827 PF12833 Helix-turn-helix domain YpsIP31758_3832 PF01627 Hpt domain YpsIP31758_3832 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YpsIP31758_3832 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_3832 PF00072 Response regulator receiver domain YpsIP31758_3832 PF00672 HAMP domain YpsIP31758_3832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_3833 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_3833 PF00072 Response regulator receiver domain YpsIP31758_3834 PF00375 Sodium:dicarboxylate symporter family YpsIP31758_3835 PF13193 AMP-binding enzyme C-terminal domain YpsIP31758_3835 PF00501 AMP-binding enzyme YpsIP31758_3835 PF16177 Acetyl-coenzyme A synthetase N-terminus YpsIP31758_3836 PF04341 Protein of unknown function, DUF485 YpsIP31758_3837 PF00474 Sodium:solute symporter family YpsIP31758_3843 PF01808 AICARFT/IMPCHase bienzyme YpsIP31758_3843 PF02142 MGS-like domain YpsIP31758_3844 PF02844 Phosphoribosylglycinamide synthetase, N domain YpsIP31758_3844 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YpsIP31758_3844 PF02843 Phosphoribosylglycinamide synthetase, C domain YpsIP31758_3845 PF07356 Protein of unknown function (DUF1481) YpsIP31758_3846 PF00216 Bacterial DNA-binding protein YpsIP31758_3847 PF04222 Protein of unknown function (DUF416) YpsIP31758_3848 PF04493 Endonuclease V YpsIP31758_3849 PF01208 Uroporphyrinogen decarboxylase (URO-D) YpsIP31758_3851 PF09297 NADH pyrophosphatase zinc ribbon domain YpsIP31758_3851 PF00293 NUDIX domain YpsIP31758_3852 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YpsIP31758_3853 PF01964 Radical SAM ThiC family YpsIP31758_3853 PF13667 ThiC-associated domain YpsIP31758_3854 PF02581 Thiamine monophosphate synthase YpsIP31758_3855 PF00899 ThiF family YpsIP31758_3856 PF05690 Thiazole biosynthesis protein ThiG YpsIP31758_3857 PF04055 Radical SAM superfamily YpsIP31758_3857 PF06968 Biotin and Thiamin Synthesis associated domain YpsIP31758_3858 PF01797 Transposase IS200 like YpsIP31758_3859 PF00623 RNA polymerase Rpb1, domain 2 YpsIP31758_3859 PF04983 RNA polymerase Rpb1, domain 3 YpsIP31758_3859 PF04998 RNA polymerase Rpb1, domain 5 YpsIP31758_3859 PF04997 RNA polymerase Rpb1, domain 1 YpsIP31758_3859 PF05000 RNA polymerase Rpb1, domain 4 YpsIP31758_3860 PF00562 RNA polymerase Rpb2, domain 6 YpsIP31758_3860 PF04560 RNA polymerase Rpb2, domain 7 YpsIP31758_3860 PF10385 RNA polymerase beta subunit external 1 domain YpsIP31758_3860 PF04565 RNA polymerase Rpb2, domain 3 YpsIP31758_3860 PF04563 RNA polymerase beta subunit YpsIP31758_3860 PF04561 RNA polymerase Rpb2, domain 2 YpsIP31758_3861 PF00542 Ribosomal protein L7/L12 C-terminal domain YpsIP31758_3861 PF16320 Ribosomal protein L7/L12 dimerisation domain YpsIP31758_3862 PF00466 Ribosomal protein L10 YpsIP31758_3863 PF00687 Ribosomal protein L1p/L10e family YpsIP31758_3864 PF00298 Ribosomal protein L11, RNA binding domain YpsIP31758_3864 PF03946 Ribosomal protein L11, N-terminal domain YpsIP31758_3865 PF00467 KOW motif YpsIP31758_3865 PF02357 Transcription termination factor nusG YpsIP31758_3866 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YpsIP31758_3867 PF00009 Elongation factor Tu GTP binding domain YpsIP31758_3867 PF03144 Elongation factor Tu domain 2 YpsIP31758_3867 PF03143 Elongation factor Tu C-terminal domain YpsIP31758_3868 PF13673 Acetyltransferase (GNAT) domain YpsIP31758_3869 PF01797 Transposase IS200 like YpsIP31758_3870 PF00485 Phosphoribulokinase / Uridine kinase family YpsIP31758_3871 PF08279 HTH domain YpsIP31758_3871 PF03099 Biotin/lipoate A/B protein ligase family YpsIP31758_3871 PF02237 Biotin protein ligase C terminal domain YpsIP31758_3872 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YpsIP31758_3872 PF01565 FAD binding domain YpsIP31758_3876 PF00132 Bacterial transferase hexapeptide (six repeats) YpsIP31758_3877 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YpsIP31758_3877 PF08501 Shikimate dehydrogenase substrate binding domain YpsIP31758_3877 PF01488 Shikimate / quinate 5-dehydrogenase YpsIP31758_3878 PF01300 Telomere recombination YpsIP31758_3879 PF01396 Topoisomerase DNA binding C4 zinc finger YpsIP31758_3880 PF04361 Protein of unknown function (DUF494) YpsIP31758_3881 PF02481 DNA recombination-mediator protein A YpsIP31758_3881 PF17782 DprA winged helix domain YpsIP31758_3882 PF01327 Polypeptide deformylase YpsIP31758_3883 PF02911 Formyl transferase, C-terminal domain YpsIP31758_3883 PF00551 Formyl transferase YpsIP31758_3884 PF01029 NusB family YpsIP31758_3884 PF01189 16S rRNA methyltransferase RsmB/F YpsIP31758_3885 PF02080 TrkA-C domain YpsIP31758_3885 PF02254 TrkA-N domain YpsIP31758_3886 PF01741 Large-conductance mechanosensitive channel, MscL YpsIP31758_3887 PF03889 Alternative ribosome-rescue factor A YpsIP31758_3888 PF13411 MerR HTH family regulatory protein YpsIP31758_3889 PF01196 Ribosomal protein L17 YpsIP31758_3890 PF01000 RNA polymerase Rpb3/RpoA insert domain YpsIP31758_3890 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YpsIP31758_3890 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YpsIP31758_3891 PF00163 Ribosomal protein S4/S9 N-terminal domain YpsIP31758_3891 PF01479 S4 domain YpsIP31758_3892 PF00411 Ribosomal protein S11 YpsIP31758_3893 PF00416 Ribosomal protein S13/S18 YpsIP31758_3894 PF00344 SecY translocase YpsIP31758_3895 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YpsIP31758_3896 PF00327 Ribosomal protein L30p/L7e YpsIP31758_3897 PF03719 Ribosomal protein S5, C-terminal domain YpsIP31758_3897 PF00333 Ribosomal protein S5, N-terminal domain YpsIP31758_3898 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YpsIP31758_3899 PF00347 Ribosomal protein L6 YpsIP31758_3900 PF00410 Ribosomal protein S8 YpsIP31758_3901 PF00253 Ribosomal protein S14p/S29e YpsIP31758_3902 PF00281 Ribosomal protein L5 YpsIP31758_3902 PF00673 ribosomal L5P family C-terminus YpsIP31758_3903 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YpsIP31758_3903 PF00467 KOW motif YpsIP31758_3904 PF00238 Ribosomal protein L14p/L23e YpsIP31758_3905 PF01797 Transposase IS200 like YpsIP31758_3906 PF00366 Ribosomal protein S17 YpsIP31758_3907 PF00831 Ribosomal L29 protein YpsIP31758_3908 PF00252 Ribosomal protein L16p/L10e YpsIP31758_3909 PF07650 KH domain YpsIP31758_3909 PF00189 Ribosomal protein S3, C-terminal domain YpsIP31758_3910 PF00237 Ribosomal protein L22p/L17e YpsIP31758_3911 PF00203 Ribosomal protein S19 YpsIP31758_3912 PF00181 Ribosomal Proteins L2, RNA binding domain YpsIP31758_3912 PF03947 Ribosomal Proteins L2, C-terminal domain YpsIP31758_3913 PF00276 Ribosomal protein L23 YpsIP31758_3914 PF00573 Ribosomal protein L4/L1 family YpsIP31758_3915 PF00297 Ribosomal protein L3 YpsIP31758_3916 PF00338 Ribosomal protein S10p/S20e YpsIP31758_3917 PF00210 Ferritin-like domain YpsIP31758_3918 PF03143 Elongation factor Tu C-terminal domain YpsIP31758_3918 PF03144 Elongation factor Tu domain 2 YpsIP31758_3918 PF00009 Elongation factor Tu GTP binding domain YpsIP31758_3919 PF14492 Elongation Factor G, domain II YpsIP31758_3919 PF00679 Elongation factor G C-terminus YpsIP31758_3919 PF00009 Elongation factor Tu GTP binding domain YpsIP31758_3919 PF03764 Elongation factor G, domain IV YpsIP31758_3919 PF03144 Elongation factor Tu domain 2 YpsIP31758_3920 PF00177 Ribosomal protein S7p/S5e YpsIP31758_3921 PF00164 Ribosomal protein S12/S23 YpsIP31758_3922 PF04077 DsrH like protein YpsIP31758_3923 PF02635 DsrE/DsrF-like family YpsIP31758_3924 PF02635 DsrE/DsrF-like family YpsIP31758_3925 PF13309 HTH domain YpsIP31758_3925 PF08348 YheO-like PAS domain YpsIP31758_3926 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YpsIP31758_3926 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YpsIP31758_3927 PF04102 SlyX YpsIP31758_3928 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YpsIP31758_3929 PF09526 Probable metal-binding protein (DUF2387) YpsIP31758_3930 PF00999 Sodium/hydrogen exchanger family YpsIP31758_3930 PF02254 TrkA-N domain YpsIP31758_3931 PF02525 Flavodoxin-like fold YpsIP31758_3932 PF12848 ABC transporter YpsIP31758_3932 PF00005 ABC transporter YpsIP31758_3933 PF00535 Glycosyl transferase family 2 YpsIP31758_3935 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YpsIP31758_3936 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_3937 PF00005 ABC transporter YpsIP31758_3938 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YpsIP31758_3939 PF01810 LysE type translocator YpsIP31758_3940 PF00561 alpha/beta hydrolase fold YpsIP31758_3941 PF06794 Uncharacterised protein family (UPF0270) YpsIP31758_3942 PF00485 Phosphoribulokinase / Uridine kinase family YpsIP31758_3944 PF02566 OsmC-like protein YpsIP31758_3945 PF13545 Crp-like helix-turn-helix domain YpsIP31758_3945 PF00027 Cyclic nucleotide-binding domain YpsIP31758_3946 PF12805 FUSC-like inner membrane protein yccS YpsIP31758_3947 PF00202 Aminotransferase class-III YpsIP31758_3948 PF00117 Glutamine amidotransferase class-I YpsIP31758_3949 PF05872 Bacterial protein of unknown function (DUF853) YpsIP31758_3950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YpsIP31758_3951 PF11975 Family 4 glycosyl hydrolase C-terminal domain YpsIP31758_3951 PF02056 Family 4 glycosyl hydrolase YpsIP31758_3952 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_3954 PF07690 Major Facilitator Superfamily YpsIP31758_3955 PF07969 Amidohydrolase family YpsIP31758_3956 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_3956 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YpsIP31758_3956 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YpsIP31758_3956 PF18267 Rubredoxin NAD+ reductase C-terminal domain YpsIP31758_3956 PF04324 BFD-like [2Fe-2S] binding domain YpsIP31758_3957 PF13806 Rieske-like [2Fe-2S] domain YpsIP31758_3958 PF01226 Formate/nitrite transporter YpsIP31758_3959 PF10414 Sirohaem synthase dimerisation region YpsIP31758_3959 PF14824 Sirohaem biosynthesis protein central YpsIP31758_3959 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YpsIP31758_3960 PF00579 tRNA synthetases class I (W and Y) YpsIP31758_3961 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_3962 PF00834 Ribulose-phosphate 3 epimerase family YpsIP31758_3963 PF02086 D12 class N6 adenine-specific DNA methyltransferase YpsIP31758_3964 PF05036 Sporulation related domain YpsIP31758_3965 PF01761 3-dehydroquinate synthase YpsIP31758_3966 PF01202 Shikimate kinase YpsIP31758_3967 PF00263 Bacterial type II and III secretion system protein YpsIP31758_3967 PF03958 Bacterial type II/III secretion system short domain YpsIP31758_3972 PF17092 Penicillin-binding protein OB-like domain YpsIP31758_3972 PF00912 Transglycosylase YpsIP31758_3972 PF00905 Penicillin binding protein transpeptidase domain YpsIP31758_3973 PF00293 NUDIX domain YpsIP31758_3974 PF07095 Intracellular growth attenuator protein IgaA YpsIP31758_3975 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_3976 PF01479 S4 domain YpsIP31758_3977 PF01430 Hsp33 protein YpsIP31758_3978 PF01293 Phosphoenolpyruvate carboxykinase YpsIP31758_3979 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_3979 PF00672 HAMP domain YpsIP31758_3979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_3980 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_3980 PF00072 Response regulator receiver domain YpsIP31758_3981 PF01272 Transcription elongation factor, GreA/GreB, C-term YpsIP31758_3981 PF03449 Transcription elongation factor, N-terminal YpsIP31758_3982 PF00575 S1 RNA binding domain YpsIP31758_3982 PF17674 HHH domain YpsIP31758_3982 PF16921 Tex protein YqgF-like domain YpsIP31758_3982 PF09371 Tex-like protein N-terminal domain YpsIP31758_3984 PF04023 FeoA domain YpsIP31758_3985 PF02421 Ferrous iron transport protein B YpsIP31758_3985 PF17910 FeoB cytosolic helical domain YpsIP31758_3985 PF07664 Ferrous iron transport protein B C terminus YpsIP31758_3985 PF07670 Nucleoside recognition YpsIP31758_3986 PF09012 FeoC like transcriptional regulator YpsIP31758_3987 PF07338 Protein of unknown function (DUF1471) YpsIP31758_3988 PF00561 alpha/beta hydrolase fold YpsIP31758_3989 PF00156 Phosphoribosyl transferase domain YpsIP31758_3990 PF01106 NifU-like domain YpsIP31758_3990 PF01521 Iron-sulphur cluster biosynthesis YpsIP31758_3992 PF02446 4-alpha-glucanotransferase YpsIP31758_3993 PF00343 Carbohydrate phosphorylase YpsIP31758_3994 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_3994 PF17874 MalT-like TPR region YpsIP31758_3995 PF00581 Rhodanese-like domain YpsIP31758_3996 PF01694 Rhomboid family YpsIP31758_3996 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YpsIP31758_3997 PF00455 DeoR C terminal sensor domain YpsIP31758_3997 PF08220 DeoR-like helix-turn-helix domain YpsIP31758_4000 PF01266 FAD dependent oxidoreductase YpsIP31758_4000 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YpsIP31758_4002 PF00343 Carbohydrate phosphorylase YpsIP31758_4003 PF08323 Starch synthase catalytic domain YpsIP31758_4003 PF00534 Glycosyl transferases group 1 YpsIP31758_4004 PF00483 Nucleotidyl transferase YpsIP31758_4005 PF00128 Alpha amylase, catalytic domain YpsIP31758_4005 PF18390 Glycogen debranching enzyme C-terminal domain YpsIP31758_4005 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YpsIP31758_4006 PF00128 Alpha amylase, catalytic domain YpsIP31758_4006 PF02806 Alpha amylase, C-terminal all-beta domain YpsIP31758_4006 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YpsIP31758_4007 PF06580 Histidine kinase YpsIP31758_4007 PF07694 5TMR of 5TMR-LYT YpsIP31758_4008 PF02369 Bacterial Ig-like domain (group 1) YpsIP31758_4008 PF11924 Inverse autotransporter, beta-domain YpsIP31758_4008 PF07979 Intimin C-type lectin domain YpsIP31758_4008 PF09134 Invasin, domain 3 YpsIP31758_4013 PF01118 Semialdehyde dehydrogenase, NAD binding domain YpsIP31758_4013 PF02774 Semialdehyde dehydrogenase, dimerisation domain YpsIP31758_4015 PF01914 MarC family integral membrane protein YpsIP31758_4019 PF05638 Type VI secretion system effector, Hcp YpsIP31758_4020 PF01202 Shikimate kinase YpsIP31758_4021 PF02447 GntP family permease YpsIP31758_4022 PF00356 Bacterial regulatory proteins, lacI family YpsIP31758_4022 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YpsIP31758_4023 PF02678 Pirin YpsIP31758_4023 PF17954 Quercetinase C-terminal cupin domain YpsIP31758_4024 PF00072 Response regulator receiver domain YpsIP31758_4024 PF00486 Transcriptional regulatory protein, C terminal YpsIP31758_4026 PF01116 Fructose-bisphosphate aldolase class-II YpsIP31758_4028 PF13407 Periplasmic binding protein domain YpsIP31758_4029 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_4030 PF00005 ABC transporter YpsIP31758_4031 PF13188 PAS domain YpsIP31758_4031 PF08448 PAS fold YpsIP31758_4031 PF00512 His Kinase A (phospho-acceptor) domain YpsIP31758_4031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_4031 PF00072 Response regulator receiver domain YpsIP31758_4033 PF01384 Phosphate transporter family YpsIP31758_4034 PF10625 Universal stress protein B (UspB) YpsIP31758_4035 PF00582 Universal stress protein family YpsIP31758_4036 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YpsIP31758_4036 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YpsIP31758_4037 PF08548 Peptidase M10 serralysin C terminal YpsIP31758_4037 PF00413 Matrixin YpsIP31758_4037 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YpsIP31758_4038 PF04445 Putative SAM-dependent methyltransferase YpsIP31758_4047 PF01432 Peptidase family M3 YpsIP31758_4048 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YpsIP31758_4049 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YpsIP31758_4049 PF07992 Pyridine nucleotide-disulphide oxidoreductase YpsIP31758_4050 PF13556 PucR C-terminal helix-turn-helix domain YpsIP31758_4050 PF17853 GGDEF-like domain YpsIP31758_4050 PF05651 Putative sugar diacid recognition YpsIP31758_4051 PF02447 GntP family permease YpsIP31758_4052 PF02595 Glycerate kinase family YpsIP31758_4056 PF03631 Virulence factor BrkB YpsIP31758_4057 PF02611 CDP-diacylglycerol pyrophosphatase YpsIP31758_4058 PF05170 AsmA family YpsIP31758_4059 PF00563 EAL domain YpsIP31758_4060 PF01361 Tautomerase enzyme YpsIP31758_4062 PF00294 pfkB family carbohydrate kinase YpsIP31758_4063 PF00675 Insulinase (Peptidase family M16) YpsIP31758_4063 PF05193 Peptidase M16 inactive domain YpsIP31758_4064 PF00375 Sodium:dicarboxylate symporter family YpsIP31758_4066 PF06917 Periplasmic pectate lyase YpsIP31758_4068 PF06178 Oligogalacturonate-specific porin protein (KdgM) YpsIP31758_4069 PF00563 EAL domain YpsIP31758_4069 PF00990 Diguanylate cyclase, GGDEF domain YpsIP31758_4069 PF00672 HAMP domain YpsIP31758_4069 PF17154 Gammaproteobacterial periplasmic sensor domain YpsIP31758_4070 PF01270 Glycosyl hydrolases family 8 YpsIP31758_4071 PF00005 ABC transporter YpsIP31758_4071 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YpsIP31758_4072 PF00005 ABC transporter YpsIP31758_4072 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YpsIP31758_4073 PF12911 N-terminal TM domain of oligopeptide transport permease C YpsIP31758_4073 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_4074 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_4075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YpsIP31758_4076 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YpsIP31758_4076 PF08479 POTRA domain, ShlB-type YpsIP31758_4076 PF17287 POTRA domain YpsIP31758_4077 PF13018 Extended Signal Peptide of Type V secretion system YpsIP31758_4077 PF13332 Hemagglutinin repeat YpsIP31758_4077 PF05860 haemagglutination activity domain YpsIP31758_4077 PF04829 Pre-toxin domain with VENN motif YpsIP31758_4078 PF07690 Major Facilitator Superfamily YpsIP31758_4079 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_4079 PF05231 MASE1 YpsIP31758_4079 PF07730 Histidine kinase YpsIP31758_4080 PF00072 Response regulator receiver domain YpsIP31758_4080 PF00196 Bacterial regulatory proteins, luxR family YpsIP31758_4081 PF00884 Sulfatase YpsIP31758_4081 PF08019 Phosphoethanolamine transferase EptA/EptB YpsIP31758_4082 PF12146 Serine aminopeptidase, S33 YpsIP31758_4084 PF00324 Amino acid permease YpsIP31758_4085 PF00221 Aromatic amino acid lyase YpsIP31758_4086 PF17391 Urocanase N-terminal domain YpsIP31758_4086 PF17392 Urocanase C-terminal domain YpsIP31758_4086 PF01175 Urocanase Rossmann-like domain YpsIP31758_4087 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_4088 PF00156 Phosphoribosyl transferase domain YpsIP31758_4091 PF01497 Periplasmic binding protein YpsIP31758_4092 PF01032 FecCD transport family YpsIP31758_4093 PF01032 FecCD transport family YpsIP31758_4095 PF00005 ABC transporter YpsIP31758_4097 PF00589 Phage integrase family YpsIP31758_4097 PF13356 Arm DNA-binding domain YpsIP31758_4098 PF12833 Helix-turn-helix domain YpsIP31758_4099 PF02653 Branched-chain amino acid transport system / permease component YpsIP31758_4100 PF00005 ABC transporter YpsIP31758_4101 PF13407 Periplasmic binding protein domain YpsIP31758_4103 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YpsIP31758_4103 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YpsIP31758_4105 PF02753 Pili assembly chaperone PapD, C-terminal domain YpsIP31758_4105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YpsIP31758_4106 PF13954 PapC N-terminal domain YpsIP31758_4106 PF00577 Outer membrane usher protein YpsIP31758_4106 PF13953 PapC C-terminal domain YpsIP31758_4107 PF00419 Fimbrial protein YpsIP31758_4108 PF01757 Acyltransferase family YpsIP31758_4110 PF07690 Major Facilitator Superfamily YpsIP31758_4114 PF09106 Elongation factor SelB, winged helix YpsIP31758_4114 PF00009 Elongation factor Tu GTP binding domain YpsIP31758_4114 PF09107 Elongation factor SelB, winged helix YpsIP31758_4114 PF03144 Elongation factor Tu domain 2 YpsIP31758_4115 PF03841 L-seryl-tRNA selenium transferase YpsIP31758_4115 PF12390 Selenocysteine synthase N terminal YpsIP31758_4116 PF04216 Protein involved in formate dehydrogenase formation YpsIP31758_4117 PF01292 Prokaryotic cytochrome b561 YpsIP31758_4118 PF09163 Formate dehydrogenase N, transmembrane YpsIP31758_4118 PF13247 4Fe-4S dicluster domain YpsIP31758_4120 PF02634 FdhD/NarQ family YpsIP31758_4121 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YpsIP31758_4121 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YpsIP31758_4122 PF00672 HAMP domain YpsIP31758_4122 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YpsIP31758_4122 PF02203 Tar ligand binding domain homologue YpsIP31758_4125 PF10928 Protein of unknown function (DUF2810) YpsIP31758_4126 PF05068 Mannitol repressor YpsIP31758_4127 PF08125 Mannitol dehydrogenase C-terminal domain YpsIP31758_4127 PF01232 Mannitol dehydrogenase Rossmann domain YpsIP31758_4128 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YpsIP31758_4128 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YpsIP31758_4128 PF02378 Phosphotransferase system, EIIC YpsIP31758_4129 PF11254 Protein of unknown function (DUF3053) YpsIP31758_4130 PF02092 Glycyl-tRNA synthetase beta subunit YpsIP31758_4130 PF05746 DALR anticodon binding domain YpsIP31758_4131 PF02091 Glycyl-tRNA synthetase alpha subunit YpsIP31758_4132 PF03352 Methyladenine glycosylase YpsIP31758_4135 PF00691 OmpA family YpsIP31758_4135 PF13488 Glycine zipper YpsIP31758_4137 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YpsIP31758_4137 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YpsIP31758_4138 PF00128 Alpha amylase, catalytic domain YpsIP31758_4140 PF00155 Aminotransferase class I and II YpsIP31758_4141 PF02080 TrkA-C domain YpsIP31758_4141 PF06826 Predicted Permease Membrane Region YpsIP31758_4142 PF00011 Hsp20/alpha crystallin family YpsIP31758_4143 PF00011 Hsp20/alpha crystallin family YpsIP31758_4144 PF07119 Protein of unknown function (DUF1375) YpsIP31758_4146 PF00291 Pyridoxal-phosphate dependent enzyme YpsIP31758_4146 PF13291 ACT domain YpsIP31758_4147 PF02423 Ornithine cyclodeaminase/mu-crystallin family YpsIP31758_4150 PF00986 DNA gyrase B subunit, carboxyl terminus YpsIP31758_4150 PF01751 Toprim domain YpsIP31758_4150 PF00204 DNA gyrase B YpsIP31758_4150 PF18053 DNA gyrase B subunit insert domain YpsIP31758_4150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YpsIP31758_4151 PF02463 RecF/RecN/SMC N terminal domain YpsIP31758_4152 PF00712 DNA polymerase III beta subunit, N-terminal domain YpsIP31758_4152 PF02768 DNA polymerase III beta subunit, C-terminal domain YpsIP31758_4152 PF02767 DNA polymerase III beta subunit, central domain YpsIP31758_4153 PF00308 Bacterial dnaA protein YpsIP31758_4153 PF08299 Bacterial dnaA protein helix-turn-helix YpsIP31758_4153 PF11638 DnaA N-terminal domain YpsIP31758_4154 PF00468 Ribosomal protein L34 YpsIP31758_4155 PF00825 Ribonuclease P YpsIP31758_4157 PF02096 60Kd inner membrane protein YpsIP31758_4157 PF14849 YidC periplasmic domain YpsIP31758_4158 PF01926 50S ribosome-binding GTPase YpsIP31758_4158 PF12631 MnmE helical domain YpsIP31758_4158 PF10396 GTP-binding protein TrmE N-terminus YpsIP31758_4159 PF12241 Trans-2-enoyl-CoA reductase catalytic region YpsIP31758_4159 PF07055 Enoyl reductase FAD binding domain YpsIP31758_4159 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YpsIP31758_4161 PF00860 Permease family YpsIP31758_4162 PF13419 Haloacid dehalogenase-like hydrolase YpsIP31758_4163 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_4164 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_4165 PF00497 Bacterial extracellular solute-binding proteins, family 3 YpsIP31758_4167 PF01895 PhoU domain YpsIP31758_4168 PF00005 ABC transporter YpsIP31758_4169 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_4170 PF00528 Binding-protein-dependent transport system inner membrane component YpsIP31758_4171 PF12849 PBP superfamily domain YpsIP31758_4173 PF01380 SIS domain YpsIP31758_4174 PF12804 MobA-like NTP transferase domain YpsIP31758_4174 PF00132 Bacterial transferase hexapeptide (six repeats) YpsIP31758_4175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YpsIP31758_4175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YpsIP31758_4176 PF02874 ATP synthase alpha/beta family, beta-barrel domain YpsIP31758_4176 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YpsIP31758_4177 PF00231 ATP synthase YpsIP31758_4178 PF00306 ATP synthase alpha/beta chain, C terminal domain YpsIP31758_4178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YpsIP31758_4178 PF02874 ATP synthase alpha/beta family, beta-barrel domain YpsIP31758_4179 PF00213 ATP synthase delta (OSCP) subunit YpsIP31758_4180 PF00430 ATP synthase B/B' CF(0) YpsIP31758_4181 PF00137 ATP synthase subunit C YpsIP31758_4182 PF00119 ATP synthase A chain YpsIP31758_4183 PF03899 ATP synthase I chain YpsIP31758_4184 PF02527 rRNA small subunit methyltransferase G YpsIP31758_4186 PF13932 GidA associated domain YpsIP31758_4186 PF01134 Glucose inhibited division protein A YpsIP31758_A0001 PF04917 Bacterial shufflon protein, N-terminal constant region YpsIP31758_A0016 PF02517 CPBP intramembrane metalloprotease YpsIP31758_A0019 PF00589 Phage integrase family YpsIP31758_A0020 PF13362 Toprim domain YpsIP31758_A0020 PF18818 Metallopeptidase superfamily domain YpsIP31758_A0020 PF08401 Domain of unknown function (DUF1738) YpsIP31758_A0023 PF01751 Toprim domain YpsIP31758_A0023 PF01131 DNA topoisomerase YpsIP31758_A0024 PF10502 Signal peptidase, peptidase S26 YpsIP31758_A0025 PF02534 Type IV secretory system Conjugative DNA transfer YpsIP31758_A0026 PF03432 Relaxase/Mobilisation nuclease domain YpsIP31758_A0026 PF18821 Large polyvalent protein-associated domain 7 YpsIP31758_A0031 PF11657 Transcriptional activator TraM YpsIP31758_A0037 PF08535 KorB domain YpsIP31758_A0037 PF06613 KorB C-terminal beta-barrel domain YpsIP31758_A0037 PF02195 ParB-like nuclease domain YpsIP31758_A0038 PF13614 AAA domain YpsIP31758_A0040 PF17394 Uncharacterized KleE stable inheritance protein YpsIP31758_A0046 PF16509 TrfB plasmid transcriptional repressor YpsIP31758_A0047 PF00437 Type II/IV secretion system protein YpsIP31758_A0049 PF05101 Type IV secretory pathway, VirB3-like protein YpsIP31758_A0050 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YpsIP31758_A0052 PF03524 Conjugal transfer protein YpsIP31758_A0054 PF03743 Bacterial conjugation TrbI-like protein YpsIP31758_A0058 PF02357 Transcription termination factor nusG YpsIP31758_A0063 PF00437 Type II/IV secretion system protein YpsIP31758_A0066 PF00437 Type II/IV secretion system protein YpsIP31758_B0014 PF07655 Secretin N-terminal domain YpsIP31758_B0014 PF00263 Bacterial type II and III secretion system protein YpsIP31758_B0017 PF00437 Type II/IV secretion system protein YpsIP31758_B0020 PF00437 Type II/IV secretion system protein YpsIP31758_B0022 PF00589 Phage integrase family YpsIP31758_B0025 PF08401 Domain of unknown function (DUF1738) YpsIP31758_B0025 PF18818 Metallopeptidase superfamily domain YpsIP31758_B0025 PF13362 Toprim domain YpsIP31758_B0031 PF01396 Topoisomerase DNA binding C4 zinc finger YpsIP31758_B0031 PF01751 Toprim domain YpsIP31758_B0031 PF01131 DNA topoisomerase YpsIP31758_B0033 PF01751 Toprim domain YpsIP31758_B0033 PF01131 DNA topoisomerase YpsIP31758_B0034 PF13362 Toprim domain YpsIP31758_B0034 PF18818 Metallopeptidase superfamily domain YpsIP31758_B0034 PF08401 Domain of unknown function (DUF1738) YpsIP31758_B0044 PF05321 Haemolysin expression modulating protein YpsIP31758_B0048 PF01527 Transposase YpsIP31758_B0052 PF00717 Peptidase S24-like YpsIP31758_B0053 PF00817 impB/mucB/samB family YpsIP31758_B0053 PF11799 impB/mucB/samB family C-terminal domain YpsIP31758_B0053 PF13438 Domain of unknown function (DUF4113) YpsIP31758_B0060 PF05321 Haemolysin expression modulating protein YpsIP31758_B0062 PF00925 GTP cyclohydrolase II YpsIP31758_B0064 PF00069 Protein kinase domain YpsIP31758_B0064 PF03781 Sulfatase-modifying factor enzyme 1 YpsIP31758_B0073 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin YpsIP31758_B0090 PF01223 DNA/RNA non-specific endonuclease YpsIP31758_B0092 PF02899 Phage integrase, N-terminal SAM-like domain YpsIP31758_B0092 PF00589 Phage integrase family YpsIP31758_B0110 PF00437 Type II/IV secretion system protein YpsIP31758_B0122 PF01580 FtsK/SpoIIIE family YpsIP31758_B0123 PF00816 H-NS histone family YpsIP31758_B0136 PF01051 Initiator Replication protein