locus-tag	class	description
YpsIP31758_0001	COG0716	FMN binding
YpsIP31758_0002	COG1522	sequence-specific DNA binding
YpsIP31758_0008	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
YpsIP31758_0009	COG0477	Major facilitator Superfamily
YpsIP31758_0011	COG2186	Transcriptional regulator
YpsIP31758_0015	COG3328	transposase activity
YpsIP31758_0016	COG1763	Mo-molybdopterin cofactor biosynthetic process
YpsIP31758_0018	COG3084	Protein conserved in bacteria
YpsIP31758_0019	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
YpsIP31758_0020	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
YpsIP31758_0021	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
YpsIP31758_0021	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
YpsIP31758_0024	COG0635	Involved in the biosynthesis of porphyrin-containing compound
YpsIP31758_0026	COG3852	Histidine kinase
YpsIP31758_0027	COG0174	glutamine synthetase
YpsIP31758_0029	COG1011	Hydrolase
YpsIP31758_0032	COG0456	acetyltransferase
YpsIP31758_0033	COG2982	Protein involved in outer membrane biogenesis
YpsIP31758_0034	COG2233	PERMEase
YpsIP31758_0036	COG0786	glutamate:sodium symporter activity
YpsIP31758_0037	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
YpsIP31758_0038	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
YpsIP31758_0039	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
YpsIP31758_0040	COG1758	RNA polymerase activity
YpsIP31758_0043	COG2860	membrane
YpsIP31758_0047	COG3157	Type VI secretion system effector, Hcp
YpsIP31758_0049	COG3561	AntA/AntB antirepressor
YpsIP31758_0055	COG1561	YicC-like family, N-terminal region
YpsIP31758_0060	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
YpsIP31758_0063	COG0267	Belongs to the bacterial ribosomal protein bL33 family
YpsIP31758_0067	COG1519	Transferase
YpsIP31758_0068	COG0859	PFAM glycosyl transferase family 9
YpsIP31758_0069	COG0859	PFAM glycosyl transferase family 9
YpsIP31758_0071	COG0156	8-amino-7-oxononanoate synthase activity
YpsIP31758_0073	COG2861	carbohydrate metabolic process
YpsIP31758_0074	COG4942	peptidase
YpsIP31758_0076	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
YpsIP31758_0077	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
YpsIP31758_0080	COG1045	serine acetyltransferase
YpsIP31758_0081	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
YpsIP31758_0082	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
YpsIP31758_0082	COG2169	Transcriptional regulator
YpsIP31758_0083	COG2205	protein histidine kinase activity
YpsIP31758_0084	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_0085	COG3678	ATP-independent chaperone mediated protein folding
YpsIP31758_0090	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
YpsIP31758_0092	COG0471	metal ion transport
YpsIP31758_0093	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
YpsIP31758_0094	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
YpsIP31758_0095	COG0583	DNA-binding transcription factor activity
YpsIP31758_0098	COG3152	Membrane
YpsIP31758_0100	COG1494	fructose-1,6-bisphosphatase
YpsIP31758_0101	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
YpsIP31758_0102	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
YpsIP31758_0111	COG1575	Belongs to the MenA family. Type 1 subfamily
YpsIP31758_0114	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
YpsIP31758_0115	COG1609	Transcriptional regulator
YpsIP31758_0116	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
YpsIP31758_0119	COG4682	membrane
YpsIP31758_0120	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
YpsIP31758_0121	COG0626	cystathionine gamma-synthase activity
YpsIP31758_0122	COG0527	aspartate kinase activity
YpsIP31758_0122	COG0460	homoserine dehydrogenase
YpsIP31758_0130	COG1629	transport
YpsIP31758_0135	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
YpsIP31758_0136	COG0678	peroxiredoxin activity
YpsIP31758_0136	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
YpsIP31758_0147	COG1879	ABC-type sugar transport system periplasmic component
YpsIP31758_0148	COG1129	ABC transporter
YpsIP31758_0149	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_0151	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_0152	COG3085	chromosome segregation
YpsIP31758_0153	COG0606	chelatase, subunit chli
YpsIP31758_0155	COG3978	acetolactate synthase activity
YpsIP31758_0156	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
YpsIP31758_0162	COG0583	DNA-binding transcription factor activity
YpsIP31758_0167	COG3121	Chaperone
YpsIP31758_0170	COG3121	Chaperone
YpsIP31758_0173	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
YpsIP31758_0179	COG3118	belongs to the thioredoxin family
YpsIP31758_0180	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
YpsIP31758_0181	COG1943	Transposase
YpsIP31758_0182	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YpsIP31758_0183	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
YpsIP31758_0184	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
YpsIP31758_0185	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
YpsIP31758_0186	COG1088	dTDP-glucose 4,6-dehydratase activity
YpsIP31758_0187	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
YpsIP31758_0188	COG0456	acetyltransferase
YpsIP31758_0189	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
YpsIP31758_0190	COG2244	polysaccharide biosynthetic process
YpsIP31758_0194	COG1113	amino acid transport
YpsIP31758_0195	COG3071	HemY protein
YpsIP31758_0196	COG2959	enzyme of heme biosynthesis
YpsIP31758_0197	COG1587	Uroporphyrinogen-III synthase
YpsIP31758_0201	COG3072	Adenylate cyclase
YpsIP31758_0204	COG5567	small periplasmic lipoprotein
YpsIP31758_0206	COG3159	Protein conserved in bacteria
YpsIP31758_0207	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
YpsIP31758_0208	COG1011	Hydrolase
YpsIP31758_0209	COG0210	DNA helicase
YpsIP31758_0211	COG5441	Belongs to the UPF0261 family
YpsIP31758_0212	COG5564	TIM-barrel signal transduction protein
YpsIP31758_0214	COG0598	Magnesium transport protein CorA
YpsIP31758_0216	COG2050	protein possibly involved in aromatic compounds catabolism
YpsIP31758_0217	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
YpsIP31758_0218	COG0514	ATP-dependent DNA helicase (RecQ)
YpsIP31758_0219	COG1280	lysine exporter protein (LysE YggA)
YpsIP31758_0220	COG1280	lysine exporter protein (LysE YggA)
YpsIP31758_0221	COG2267	carboxylic ester hydrolase activity
YpsIP31758_0222	COG0561	phosphatase activity
YpsIP31758_0224	COG0584	glycerophosphoryl diester phosphodiesterase
YpsIP31758_0225	COG2271	Major facilitator Superfamily
YpsIP31758_0227	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
YpsIP31758_0229	COG0247	lactate metabolic process
YpsIP31758_0231	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
YpsIP31758_0234	COG3714	YhhN family
YpsIP31758_0237	COG3776	membrane
YpsIP31758_0238	COG0742	ribosomal rna small subunit methyltransferase
YpsIP31758_0239	COG0552	protein localization to endoplasmic reticulum
YpsIP31758_0239	COG0552	protein localization to endoplasmic reticulum
YpsIP31758_0240	COG2884	Cell division ATP-binding protein ftsE
YpsIP31758_0241	COG2177	Part of the ABC transporter FtsEX involved in
YpsIP31758_0244	COG0683	leucine binding
YpsIP31758_0245	COG0559	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_0246	COG4177	L-phenylalanine transmembrane transporter activity
YpsIP31758_0247	COG0411	ABC transporter
YpsIP31758_0248	COG0410	ABC transporter
YpsIP31758_0260	COG0584	glycerophosphoryl diester phosphodiesterase
YpsIP31758_0261	COG0679	Auxin Efflux Carrier
YpsIP31758_0262	COG0583	DNA-binding transcription factor activity
YpsIP31758_0265	COG0412	Dienelactone hydrolase
YpsIP31758_0266	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
YpsIP31758_0268	COG1966	Carbon starvation protein
YpsIP31758_0269	COG0586	Pfam SNARE associated Golgi protein
YpsIP31758_0270	COG1322	Protein conserved in bacteria
YpsIP31758_0272	COG3165	ubiquinone biosynthetic process from chorismate
YpsIP31758_0274	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
YpsIP31758_0276	COG0805	protein transport
YpsIP31758_0285	COG1739	Uncharacterized protein family UPF0029
YpsIP31758_0286	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
YpsIP31758_0287	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
YpsIP31758_0291	COG3328	transposase activity
YpsIP31758_0294	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
YpsIP31758_0295	COG2224	Isocitrate lyase
YpsIP31758_0297	COG1414	Transcriptional regulator
YpsIP31758_0301	COG0527	aspartate kinase activity
YpsIP31758_0304	COG3833	ABC-type maltose transport systems, permease component
YpsIP31758_0305	COG1175	transmembrane transport
YpsIP31758_0328	COG3501	Rhs element vgr protein
YpsIP31758_0330	COG3209	COG3209 Rhs family protein
YpsIP31758_0333	COG3209	COG3209 Rhs family protein
YpsIP31758_0339	COG3501	Rhs element vgr protein
YpsIP31758_0341	COG3209	COG3209 Rhs family protein
YpsIP31758_0345	COG0673	inositol 2-dehydrogenase activity
YpsIP31758_0347	COG2207	Transcriptional regulator
YpsIP31758_0348	COG1869	D-ribose catabolic process
YpsIP31758_0349	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
YpsIP31758_0352	COG0431	NADPH-dependent FMN reductase
YpsIP31758_0353	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
YpsIP31758_0355	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
YpsIP31758_0357	COG3077	Addiction module antitoxin, RelB DinJ family
YpsIP31758_0358	COG2252	PERMEase
YpsIP31758_0359	COG0025	NhaP-type Na H and K H
YpsIP31758_0361	COG1560	Kdo2-lipid A biosynthetic process
YpsIP31758_0365	COG1129	ABC transporter
YpsIP31758_0366	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_0368	COG1069	ribulokinase activity
YpsIP31758_0370	COG0625	glutathione transferase activity
YpsIP31758_0374	COG1278	Cold shock
YpsIP31758_0375	COG1278	Cold shock
YpsIP31758_0376	COG1278	Cold shock
YpsIP31758_0378	COG3133	Outer membrane lipoprotein
YpsIP31758_0379	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
YpsIP31758_0381	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
YpsIP31758_0385	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
YpsIP31758_0386	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
YpsIP31758_0389	COG4145	pantothenate transmembrane transporter activity
YpsIP31758_0390	COG3924	membrane
YpsIP31758_0391	COG0439	Biotin carboxylase
YpsIP31758_0392	COG0511	ligase activity, forming carbon-carbon bonds
YpsIP31758_0396	COG0604	alcohol dehydrogenase
YpsIP31758_0397	COG2199	diguanylate cyclase activity
YpsIP31758_0397	COG2200	EAL domain
YpsIP31758_0398	COG1077	Cell shape determining protein MreB Mrl
YpsIP31758_0399	COG1792	Involved in formation and maintenance of cell shape
YpsIP31758_0400	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
YpsIP31758_0402	COG1530	ribonuclease E activity
YpsIP31758_0403	COG3164	Protein of unknown function
YpsIP31758_0404	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
YpsIP31758_0405	COG0312	modulator of DNA gyrase
YpsIP31758_0418	COG0583	DNA-binding transcription factor activity
YpsIP31758_0424	COG2732	(Barnase) inhibitor
YpsIP31758_0426	COG0312	modulator of DNA gyrase
YpsIP31758_0428	COG3783	Cytochrome b(562)
YpsIP31758_0429	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YpsIP31758_0430	COG0366	Alpha amylase catalytic
YpsIP31758_0431	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
YpsIP31758_0431	COG1263	PTS System
YpsIP31758_0432	COG1609	Transcriptional regulator
YpsIP31758_0437	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
YpsIP31758_0439	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
YpsIP31758_0441	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
YpsIP31758_0442	COG1137	ATPase activity
YpsIP31758_0443	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
YpsIP31758_0444	COG3117	lipopolysaccharide transmembrane transporter activity
YpsIP31758_0445	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
YpsIP31758_0446	COG0517	IMP dehydrogenase activity
YpsIP31758_0446	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
YpsIP31758_0447	COG0530	calcium, potassium:sodium antiporter activity
YpsIP31758_0448	COG1127	ABC transporter
YpsIP31758_0449	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
YpsIP31758_0450	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
YpsIP31758_0451	COG2854	intermembrane phospholipid transfer
YpsIP31758_0452	COG3113	response to antibiotic
YpsIP31758_0453	COG5007	Belongs to the BolA IbaG family
YpsIP31758_0455	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
YpsIP31758_0456	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
YpsIP31758_0457	COG3105	Protein conserved in bacteria
YpsIP31758_0458	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
YpsIP31758_0462	COG0625	glutathione transferase activity
YpsIP31758_0463	COG2969	positive regulation of protein catabolic process
YpsIP31758_0465	COG0493	'glutamate synthase
YpsIP31758_0466	COG0069	glutamate synthase activity
YpsIP31758_0466	COG0070	glutamate synthase
YpsIP31758_0466	COG0067	glutamate synthase
YpsIP31758_0468	COG1242	4 iron, 4 sulfur cluster binding
YpsIP31758_0469	COG5002	protein histidine kinase activity
YpsIP31758_0469	COG0784	Response regulator, receiver
YpsIP31758_0469	COG2198	Histidine kinase
YpsIP31758_0470	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
YpsIP31758_0472	COG2823	Periplasmic or secreted lipoprotein
YpsIP31758_0476	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
YpsIP31758_0477	COG1741	Belongs to the pirin family
YpsIP31758_0478	COG0583	DNA-binding transcription factor activity
YpsIP31758_0479	COG0435	Glutathione S-transferase
YpsIP31758_0480	COG2259	Doxx family
YpsIP31758_0482	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
YpsIP31758_0483	COG4575	ribosome binding
YpsIP31758_0487	COG0586	Pfam SNARE associated Golgi protein
YpsIP31758_0490	COG2271	Major facilitator Superfamily
YpsIP31758_0492	COG0246	Mannitol dehydrogenase
YpsIP31758_0493	COG2721	sulfolactate sulfo-lyase activity
YpsIP31758_0496	COG1943	Transposase
YpsIP31758_0497	COG0673	inositol 2-dehydrogenase activity
YpsIP31758_0498	COG1451	nucleotide metabolic process
YpsIP31758_0501	COG1902	pentaerythritol trinitrate reductase activity
YpsIP31758_0501	COG0446	pyridine nucleotide-disulphide oxidoreductase
YpsIP31758_0502	COG3247	response to pH
YpsIP31758_0505	COG4245	von Willebrand factor, type A
YpsIP31758_0508	COG4245	von Willebrand factor, type A
YpsIP31758_0509	COG2831	hemolysin activation secretion protein
YpsIP31758_0510	COG3210	domain, Protein
YpsIP31758_0514	COG3210	domain, Protein
YpsIP31758_0519	COG3210	domain, Protein
YpsIP31758_0521	COG3210	domain, Protein
YpsIP31758_0525	COG3842	ATPase activity
YpsIP31758_0526	COG3459	Glycosyltransferase 36 associated
YpsIP31758_0527	COG1609	Transcriptional regulator
YpsIP31758_0528	COG1653	transport
YpsIP31758_0530	COG0395	ABC-type sugar transport system, permease component
YpsIP31758_0534	COG1289	transmembrane transporter activity
YpsIP31758_0542	COG0251	oxidation-reduction process
YpsIP31758_0549	COG3157	Type VI secretion system effector, Hcp
YpsIP31758_0553	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
YpsIP31758_0554	COG0358	DNA primase activity
YpsIP31758_0558	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
YpsIP31758_0561	COG4991	sh3 domain protein
YpsIP31758_0562	COG3025	triphosphatase activity
YpsIP31758_0565	COG0531	amino acid
YpsIP31758_0570	COG3384	dioxygenase
YpsIP31758_0571	COG0754	glutathionylspermidine amidase activity
YpsIP31758_0573	COG1538	Outer membrane efflux protein
YpsIP31758_0574	COG0494	nUDIX hydrolase
YpsIP31758_0575	COG3151	Protein conserved in bacteria
YpsIP31758_0576	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
YpsIP31758_0577	COG3150	esterase
YpsIP31758_0578	COG0187	DNA topoisomerase II activity
YpsIP31758_0579	COG0583	DNA-binding transcription factor activity
YpsIP31758_0580	COG2249	NAD(P)H dehydrogenase (quinone) activity
YpsIP31758_0581	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
YpsIP31758_0582	COG0204	Acyl-transferase
YpsIP31758_0583	COG2132	Multicopper oxidase
YpsIP31758_0586	COG0656	L-ascorbic acid biosynthetic process
YpsIP31758_0587	COG1979	alcohol dehydrogenase
YpsIP31758_0588	COG2207	Transcriptional regulator
YpsIP31758_0589	COG0586	Pfam SNARE associated Golgi protein
YpsIP31758_0590	COG0626	cystathionine gamma-synthase activity
YpsIP31758_0591	COG0811	peptide transport
YpsIP31758_0592	COG0848	biopolymer transport protein
YpsIP31758_0601	COG4964	Belongs to the GSP D family
YpsIP31758_0610	COG3397	chitin binding
YpsIP31758_0611	COG3469	chitinase activity
YpsIP31758_0617	COG4592	Periplasmic binding protein
YpsIP31758_0623	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
YpsIP31758_0624	COG1684	flagellar biosynthetic protein fliR
YpsIP31758_0625	COG1987	bacterial-type flagellum assembly
YpsIP31758_0629	COG2204	response regulator
YpsIP31758_0638	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
YpsIP31758_0639	COG1815	bacterial-type flagellum-dependent cell motility
YpsIP31758_0640	COG1558	bacterial-type flagellum-dependent cell motility
YpsIP31758_0641	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
YpsIP31758_0642	COG1749	Flagellar hook protein flgE
YpsIP31758_0643	COG4787	bacterial-type flagellum-dependent cell motility
YpsIP31758_0644	COG4786	Flagellar basal body rod
YpsIP31758_0646	COG1706	bacterial-type flagellum-dependent cell motility
YpsIP31758_0648	COG1256	bacterial-type flagellum assembly
YpsIP31758_0652	COG3710	Transcriptional regulator
YpsIP31758_0653	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
YpsIP31758_0655	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
YpsIP31758_0660	COG1191	sigma factor activity
YpsIP31758_0661	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
YpsIP31758_0665	COG3133	Outer membrane lipoprotein
YpsIP31758_0666	COG3300	MHYT domain
YpsIP31758_0666	COG5001	Diguanylate cyclase
YpsIP31758_0667	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
YpsIP31758_0669	COG4282	regulation of fungal-type cell wall biogenesis
YpsIP31758_0678	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
YpsIP31758_0680	COG2195	Cleaves the N-terminal amino acid of tripeptides
YpsIP31758_0681	COG4771	TonB-dependent receptor
YpsIP31758_0683	COG2226	methyltransferase
YpsIP31758_0683	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
YpsIP31758_0683	COG3433	isochorismatase activity
YpsIP31758_0684	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
YpsIP31758_0684	COG2226	methyltransferase
YpsIP31758_0684	COG3433	isochorismatase activity
YpsIP31758_0690	COG1132	(ABC) transporter
YpsIP31758_0693	COG2610	gluconate transmembrane transporter activity
YpsIP31758_0696	COG3501	Rhs element vgr protein
YpsIP31758_0698	COG3209	COG3209 Rhs family protein
YpsIP31758_0706	COG0471	metal ion transport
YpsIP31758_0707	COG1609	Transcriptional regulator
YpsIP31758_0709	COG2211	Major facilitator Superfamily
YpsIP31758_0719	COG3916	Acyl-homoserine-lactone synthase
YpsIP31758_0720	COG2771	luxR family
YpsIP31758_0758	COG2378	regulation of single-species biofilm formation
YpsIP31758_0759	COG3596	GTP binding
YpsIP31758_0781	COG2885	chlorophyll binding
YpsIP31758_0809	COG0582	viral genome integration into host DNA
YpsIP31758_0811	COG1982	Orn Lys Arg decarboxylase major
YpsIP31758_0812	COG1879	ABC-type sugar transport system periplasmic component
YpsIP31758_0813	COG1129	ABC transporter
YpsIP31758_0814	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_0815	COG4774	siderophore transport
YpsIP31758_0819	COG1194	a g-specific adenine glycosylase
YpsIP31758_0821	COG3171	Protein conserved in bacteria
YpsIP31758_0822	COG2066	Belongs to the glutaminase family
YpsIP31758_0824	COG3064	Membrane
YpsIP31758_0824	COG1073	alpha beta
YpsIP31758_0824	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
YpsIP31758_0825	COG0635	Involved in the biosynthesis of porphyrin-containing compound
YpsIP31758_0828	COG0762	integral membrane protein
YpsIP31758_0829	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
YpsIP31758_0830	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
YpsIP31758_0831	COG2805	Type II/IV secretion system protein
YpsIP31758_0833	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
YpsIP31758_0836	COG0189	ligase activity
YpsIP31758_0837	COG1385	rRNA (uridine-N3-)-methyltransferase activity
YpsIP31758_0839	COG2356	endonuclease I
YpsIP31758_0843	COG1166	arginine decarboxylase activity
YpsIP31758_0845	COG0501	Belongs to the peptidase M48B family
YpsIP31758_0847	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
YpsIP31758_0850	COG0191	fructose-bisphosphate aldolase activity
YpsIP31758_0855	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
YpsIP31758_0856	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
YpsIP31758_0857	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
YpsIP31758_0860	COG0006	proline dipeptidase activity
YpsIP31758_0861	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
YpsIP31758_0862	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
YpsIP31758_0868	COG5295	Hep Hag repeat protein
YpsIP31758_0870	COG1272	protein, Hemolysin III
YpsIP31758_0873	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
YpsIP31758_0875	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_0876	COG2205	protein histidine kinase activity
YpsIP31758_0877	COG4452	Inner membrane protein CreD
YpsIP31758_0878	COG0716	FMN binding
YpsIP31758_0879	COG4974	Belongs to the 'phage' integrase family
YpsIP31758_0880	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
YpsIP31758_0881	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
YpsIP31758_0884	COG0582	viral genome integration into host DNA
YpsIP31758_0889	COG2944	sequence-specific DNA binding
YpsIP31758_0905	COG1695	Transcriptional regulator
YpsIP31758_0906	COG0791	NLP P60 protein
YpsIP31758_0909	COG1879	ABC-type sugar transport system periplasmic component
YpsIP31758_0911	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_0912	COG1129	ABC transporter
YpsIP31758_0914	COG2182	Extracellular solute-binding protein
YpsIP31758_0915	COG1175	transmembrane transport
YpsIP31758_0916	COG3833	ABC-type maltose transport systems, permease component
YpsIP31758_0917	COG3867	Arabinogalactan endo-beta-1,4-galactanase
YpsIP31758_0918	COG1874	Beta-galactosidase
YpsIP31758_0919	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
YpsIP31758_0919	COG1263	PTS System
YpsIP31758_0926	COG2271	Major facilitator Superfamily
YpsIP31758_0929	COG0191	fructose-bisphosphate aldolase activity
YpsIP31758_0931	COG3119	arylsulfatase activity
YpsIP31758_0932	COG0641	radical SAM
YpsIP31758_0935	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_0937	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
YpsIP31758_0938	COG3716	PTS system mannose fructose sorbose family IID component
YpsIP31758_0939	COG3715	PTS system
YpsIP31758_0940	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
YpsIP31758_0941	COG2222	sugar isomerase
YpsIP31758_0943	COG1349	DNA-binding transcription factor activity
YpsIP31758_0945	COG3119	arylsulfatase activity
YpsIP31758_0950	COG0288	reversible hydration of carbon dioxide
YpsIP31758_0957	COG2165	general secretion pathway protein
YpsIP31758_0967	COG0840	transmembrane signaling receptor activity
YpsIP31758_0969	COG0583	DNA-binding transcription factor activity
YpsIP31758_0970	COG0583	DNA-binding transcription factor activity
YpsIP31758_0971	COG2814	Major facilitator Superfamily
YpsIP31758_0972	COG1609	Transcriptional regulator
YpsIP31758_0973	COG0019	diaminopimelate decarboxylase activity
YpsIP31758_0979	COG0667	Aldo Keto reductase
YpsIP31758_0989	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
YpsIP31758_0991	COG1074	ATP-dependent DNA helicase activity
YpsIP31758_0992	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
YpsIP31758_0994	COG0860	N-Acetylmuramoyl-L-alanine amidase
YpsIP31758_0995	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
YpsIP31758_0996	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
YpsIP31758_0997	COG2166	iron-sulfur cluster assembly
YpsIP31758_0998	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
YpsIP31758_0999	COG0583	DNA-binding transcription factor activity
YpsIP31758_1000	COG2363	Small membrane protein
YpsIP31758_1003	COG1611	Belongs to the LOG family
YpsIP31758_1006	COG3098	single-species biofilm formation
YpsIP31758_1007	COG0564	pseudouridine synthase activity
YpsIP31758_1012	COG0024	Methionine aminopeptidase
YpsIP31758_1018	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
YpsIP31758_1019	COG0575	Belongs to the CDS family
YpsIP31758_1020	COG0750	zinc metalloprotease
YpsIP31758_1022	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
YpsIP31758_1026	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
YpsIP31758_1028	COG0587	DNA-directed DNA polymerase activity
YpsIP31758_1030	COG0346	lactoylglutathione lyase activity
YpsIP31758_1033	COG4568	rho-dependent transcription termination
YpsIP31758_1035	COG4681	YaeQ
YpsIP31758_1037	COG3015	lipoprotein NlpE involved in copper resistance
YpsIP31758_1039	COG1720	tRNA m6t6A37 methyltransferase activity
YpsIP31758_1041	COG1464	Belongs to the NlpA lipoprotein family
YpsIP31758_1042	COG2011	ABC-type metal ion transport system permease component
YpsIP31758_1044	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
YpsIP31758_1048	COG0656	L-ascorbic acid biosynthetic process
YpsIP31758_1051	COG1388	LysM domain
YpsIP31758_1051	COG0741	lytic transglycosylase activity
YpsIP31758_1053	COG2226	methyltransferase
YpsIP31758_1055	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
YpsIP31758_1056	COG1953	Uracil, thiamine, allantoin
YpsIP31758_1059	COG2113	Glycine betaine
YpsIP31758_1060	COG4176	ABC-type proline glycine betaine transport system permease component
YpsIP31758_1061	COG4175	Glycine betaine
YpsIP31758_1062	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
YpsIP31758_1070	COG1278	Cold shock
YpsIP31758_1071	COG0747	negative chemotaxis
YpsIP31758_1073	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
YpsIP31758_1074	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
YpsIP31758_1075	COG1124	(ABC) transporter
YpsIP31758_1082	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
YpsIP31758_1084	COG4413	Urea transporter
YpsIP31758_1085	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
YpsIP31758_1087	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
YpsIP31758_1088	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
YpsIP31758_1091	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
YpsIP31758_1092	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
YpsIP31758_1093	COG1447	Phosphotransferase system cellobiose-specific component IIA
YpsIP31758_1094	COG1917	Cupin 2, conserved barrel domain protein
YpsIP31758_1094	COG2169	Transcriptional regulator
YpsIP31758_1098	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
YpsIP31758_1099	COG0033	Phosphoglucomutase
YpsIP31758_1102	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_1103	COG2205	protein histidine kinase activity
YpsIP31758_1111	COG3272	Protein of unknown function (DUF1722)
YpsIP31758_1113	COG5212	phosphodiesterase
YpsIP31758_1114	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
YpsIP31758_1115	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
YpsIP31758_1116	COG1984	allophanate hydrolase subunit 2
YpsIP31758_1126	COG0513	Belongs to the DEAD box helicase family
YpsIP31758_1128	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
YpsIP31758_1130	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
YpsIP31758_1131	COG3026	antisigma factor binding
YpsIP31758_1132	COG3086	response to oxidative stress
YpsIP31758_1135	COG0681	Belongs to the peptidase S26 family
YpsIP31758_1141	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
YpsIP31758_1142	COG1737	Transcriptional regulator
YpsIP31758_1144	COG0560	Phosphoserine phosphatase
YpsIP31758_1145	COG0590	tRNA wobble adenosine to inosine editing
YpsIP31758_1150	COG2205	protein histidine kinase activity
YpsIP31758_1151	COG3170	Tfp pilus assembly protein FimV
YpsIP31758_1152	COG2204	response regulator
YpsIP31758_1154	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
YpsIP31758_1154	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
YpsIP31758_1155	COG0347	Belongs to the P(II) protein family
YpsIP31758_1156	COG2188	Transcriptional regulator
YpsIP31758_1157	COG1017	nitric oxide dioxygenase activity
YpsIP31758_1157	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
YpsIP31758_1161	COG3711	transcriptional antiterminator
YpsIP31758_1162	COG2814	Major facilitator Superfamily
YpsIP31758_1163	COG3683	transport system, periplasmic component
YpsIP31758_1164	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
YpsIP31758_1165	COG0483	inositol monophosphate 1-phosphatase activity
YpsIP31758_1168	COG1104	cysteine desulfurase activity
YpsIP31758_1169	COG0822	iron-sulfur transferase activity
YpsIP31758_1173	COG0633	Ferredoxin
YpsIP31758_1174	COG2975	iron-sulfur cluster assembly
YpsIP31758_1177	COG3468	outer membrane autotransporter barrel domain protein
YpsIP31758_1179	COG3468	outer membrane autotransporter barrel domain protein
YpsIP31758_1188	COG2976	Protein conserved in bacteria
YpsIP31758_1189	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
YpsIP31758_1192	COG1645	bacterial-type flagellum-dependent swarming motility
YpsIP31758_1194	COG0517	IMP dehydrogenase activity
YpsIP31758_1194	COG0516	GMP reductase activity
YpsIP31758_1203	COG0351	phosphomethylpyrimidine kinase
YpsIP31758_1209	COG3422	double-strand break repair
YpsIP31758_1210	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_1211	COG2205	protein histidine kinase activity
YpsIP31758_1216	COG3842	ATPase activity
YpsIP31758_1218	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
YpsIP31758_1220	COG1176	ABC-type spermidine putrescine transport system, permease component I
YpsIP31758_1221	COG1177	transmembrane transport
YpsIP31758_1223	COG0443	Heat shock 70 kDa protein
YpsIP31758_1224	COG2239	Acts as a magnesium transporter
YpsIP31758_1226	COG0248	Ppx GppA phosphatase
YpsIP31758_1227	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
YpsIP31758_1229	COG0581	inorganic phosphate transmembrane transporter activity
YpsIP31758_1232	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
YpsIP31758_1233	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
YpsIP31758_1236	COG2233	PERMEase
YpsIP31758_1238	COG1393	Belongs to the ArsC family
YpsIP31758_1239	COG4783	chaperone-mediated protein folding
YpsIP31758_1240	COG0628	permease
YpsIP31758_1245	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
YpsIP31758_1246	COG2716	regulation of RNA biosynthetic process
YpsIP31758_1248	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
YpsIP31758_1250	COG2321	neutral zinc metallopeptidase
YpsIP31758_1254	COG1876	peptidase activity
YpsIP31758_1256	COG1393	Belongs to the ArsC family
YpsIP31758_1258	COG1840	ABC-type Fe3 transport system, periplasmic component
YpsIP31758_1259	COG1175	transmembrane transport
YpsIP31758_1260	COG3842	ATPase activity
YpsIP31758_1263	COG3119	arylsulfatase activity
YpsIP31758_1264	COG0641	radical SAM
YpsIP31758_1266	COG1988	membrane-bound metal-dependent
YpsIP31758_1268	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
YpsIP31758_1270	COG2197	response regulator
YpsIP31758_1271	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
YpsIP31758_1271	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
YpsIP31758_1272	COG3062	negative regulation of establishment of protein localization
YpsIP31758_1274	COG3043	anaerobic respiration
YpsIP31758_1275	COG3005	denitrification pathway
YpsIP31758_1286	COG0456	acetyltransferase
YpsIP31758_1289	COG3111	PFAM Bacterial OB fold (BOF) protein
YpsIP31758_1292	COG2837	iron assimilation
YpsIP31758_1293	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
YpsIP31758_1296	COG2731	YhcH YjgK YiaL family protein
YpsIP31758_1297	COG1737	Transcriptional regulator
YpsIP31758_1299	COG4150	thiosulfate binding
YpsIP31758_1300	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
YpsIP31758_1301	COG4208	sulfate ABC transporter
YpsIP31758_1304	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_1305	COG3850	Histidine kinase
YpsIP31758_1305	COG5002	protein histidine kinase activity
YpsIP31758_1307	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
YpsIP31758_1308	COG0006	proline dipeptidase activity
YpsIP31758_1309	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
YpsIP31758_1312	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
YpsIP31758_1313	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_1314	COG2205	protein histidine kinase activity
YpsIP31758_1315	COG2190	(PTS) system
YpsIP31758_1317	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
YpsIP31758_1318	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
YpsIP31758_1319	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
YpsIP31758_1322	COG3530	Putative quorum-sensing-regulated virulence factor
YpsIP31758_1326	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
YpsIP31758_1329	COG0667	Aldo Keto reductase
YpsIP31758_1334	COG0436	Aminotransferase
YpsIP31758_1335	COG3038	cytochrome b561
YpsIP31758_1341	COG3381	protein complex oligomerization
YpsIP31758_1342	COG3302	dmso reductase anchor subunit
YpsIP31758_1343	COG0437	4 iron, 4 sulfur cluster binding
YpsIP31758_1344	COG0243	molybdopterin cofactor binding
YpsIP31758_1351	COG2951	lytic endotransglycosylase activity
YpsIP31758_1364	COG3121	Chaperone
YpsIP31758_1365	COG3188	usher protein
YpsIP31758_1374	COG3501	Rhs element vgr protein
YpsIP31758_1380	COG2824	Alkylphosphonate utilization operon protein PhnA
YpsIP31758_1382	COG1704	LemA family
YpsIP31758_1388	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
YpsIP31758_1389	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
YpsIP31758_1390	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
YpsIP31758_1392	COG1138	Cytochrome C-type biogenesis protein
YpsIP31758_1393	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
YpsIP31758_1394	COG3088	subunit of a heme lyase
YpsIP31758_1394	COG4235	cytochrome complex assembly
YpsIP31758_1395	COG3088	subunit of a heme lyase
YpsIP31758_1395	COG4235	cytochrome complex assembly
YpsIP31758_1398	COG3691	Protein conserved in bacteria
YpsIP31758_1402	COG2062	phosphohistidine phosphatase, SixA
YpsIP31758_1404	COG2890	protein-(glutamine-N5) methyltransferase activity
YpsIP31758_1407	COG0730	response to heat
YpsIP31758_1408	COG3101	peptidyl-lysine hydroxylation
YpsIP31758_1411	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
YpsIP31758_1412	COG1794	racemase activity, acting on amino acids and derivatives
YpsIP31758_1415	COG0697	spore germination
YpsIP31758_1419	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
YpsIP31758_1421	COG0586	Pfam SNARE associated Golgi protein
YpsIP31758_1423	COG0285	dihydrofolate synthase activity
YpsIP31758_1424	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
YpsIP31758_1425	COG1286	toxin biosynthetic process
YpsIP31758_1426	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
YpsIP31758_1427	COG0163	prenyltransferase activity
YpsIP31758_1428	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
YpsIP31758_1429	COG4215	(ABC) transporter
YpsIP31758_1430	COG4160	amino acid transport
YpsIP31758_1431	COG4598	ABC transporter
YpsIP31758_1432	COG1090	epimerase
YpsIP31758_1434	COG0622	Phosphoesterase
YpsIP31758_1436	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
YpsIP31758_1437	COG3037	sugar-specific permease SgaT UlaA
YpsIP31758_1441	COG1609	Transcriptional regulator
YpsIP31758_1442	COG0280	phosphate acetyltransferase
YpsIP31758_1442	COG0857	belongs to the CobB CobQ family
YpsIP31758_1446	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
YpsIP31758_1447	COG0471	metal ion transport
YpsIP31758_1447	COG0490	domain, Protein
YpsIP31758_1450	COG0436	Aminotransferase
YpsIP31758_1452	COG0583	DNA-binding transcription factor activity
YpsIP31758_1459	COG1034	ATP synthesis coupled electron transport
YpsIP31758_1462	COG0839	Belongs to the complex I subunit 6 family
YpsIP31758_1464	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
YpsIP31758_1465	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
YpsIP31758_1468	COG2731	YhcH YjgK YiaL family protein
YpsIP31758_1469	COG3265	gluconokinase activity
YpsIP31758_1470	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_1473	COG1609	Transcriptional regulator
YpsIP31758_1475	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
YpsIP31758_1476	COG0129	dihydroxy-acid dehydratase activity
YpsIP31758_1479	COG4575	ribosome binding
YpsIP31758_1481	COG1169	isochorismate synthase
YpsIP31758_1484	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
YpsIP31758_1487	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
YpsIP31758_1493	COG1126	abc transporter atp-binding protein
YpsIP31758_1494	COG0765	amino acid transport
YpsIP31758_1495	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
YpsIP31758_1501	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
YpsIP31758_1506	COG1063	alcohol dehydrogenase
YpsIP31758_1507	COG1879	ABC-type sugar transport system periplasmic component
YpsIP31758_1508	COG1129	ABC transporter
YpsIP31758_1509	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_1510	COG1609	Transcriptional regulator
YpsIP31758_1511	COG0583	DNA-binding transcription factor activity
YpsIP31758_1512	COG0473	3-isopropylmalate dehydrogenase activity
YpsIP31758_1515	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
YpsIP31758_1516	COG4638	Rieske (2fe-2S)
YpsIP31758_1517	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
YpsIP31758_1518	COG2831	hemolysin activation secretion protein
YpsIP31758_1519	COG3210	domain, Protein
YpsIP31758_1521	COG3210	domain, Protein
YpsIP31758_1524	COG3842	ATPase activity
YpsIP31758_1526	COG1609	Transcriptional regulator
YpsIP31758_1529	COG0395	ABC-type sugar transport system, permease component
YpsIP31758_1530	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
YpsIP31758_1534	COG0668	transmembrane transport
YpsIP31758_1535	COG1518	maintenance of DNA repeat elements
YpsIP31758_1536	COG1203	CRISPR-associated helicase, Cas3
YpsIP31758_1541	COG0667	Aldo Keto reductase
YpsIP31758_1543	COG0477	Major facilitator Superfamily
YpsIP31758_1545	COG0583	DNA-binding transcription factor activity
YpsIP31758_1546	COG3916	Acyl-homoserine-lactone synthase
YpsIP31758_1547	COG2771	luxR family
YpsIP31758_1552	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
YpsIP31758_1553	COG2943	transferase activity, transferring hexosyl groups
YpsIP31758_1554	COG5645	(Lipo)protein
YpsIP31758_1555	COG3104	oligopeptide transport
YpsIP31758_1556	COG1560	Kdo2-lipid A biosynthetic process
YpsIP31758_1561	COG0628	permease
YpsIP31758_1568	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
YpsIP31758_1569	COG1530	ribonuclease E activity
YpsIP31758_1570	COG0564	pseudouridine synthase activity
YpsIP31758_1573	COG1399	metal-binding, possibly nucleic acid-binding protein
YpsIP31758_1574	COG0333	Belongs to the bacterial ribosomal protein bL32 family
YpsIP31758_1578	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_1580	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
YpsIP31758_1581	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
YpsIP31758_1582	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
YpsIP31758_1584	COG0470	DNA polymerase III
YpsIP31758_1585	COG0084	hydrolase, TatD family'
YpsIP31758_1586	COG1263	PTS System
YpsIP31758_1586	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
YpsIP31758_1587	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
YpsIP31758_1588	COG0537	adenosine 5'-monophosphoramidase activity
YpsIP31758_1589	COG5633	Lipoprotein
YpsIP31758_1594	COG1252	NADH dehydrogenase
YpsIP31758_1597	COG3134	Outer membrane lipoprotein
YpsIP31758_1598	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
YpsIP31758_1600	COG4591	ABC-type transport system involved in lipoprotein release permease component
YpsIP31758_1602	COG4591	ABC-type transport system involved in lipoprotein release permease component
YpsIP31758_1604	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
YpsIP31758_1606	COG2850	peptidyl-arginine hydroxylation
YpsIP31758_1608	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_1610	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
YpsIP31758_1614	COG1187	pseudouridine synthase activity
YpsIP31758_1615	COG0538	isocitrate dehydrogenase activity
YpsIP31758_1618	COG0840	transmembrane signaling receptor activity
YpsIP31758_1619	COG0702	epimerase
YpsIP31758_1620	COG1733	regulation of RNA biosynthetic process
YpsIP31758_1625	COG1522	sequence-specific DNA binding
YpsIP31758_1628	COG3321	synthase
YpsIP31758_1628	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_1628	COG0604	alcohol dehydrogenase
YpsIP31758_1631	COG0840	transmembrane signaling receptor activity
YpsIP31758_1632	COG1285	pathogenesis
YpsIP31758_1637	COG1360	Flagellar Motor Protein
YpsIP31758_1638	COG0643	Histidine kinase
YpsIP31758_1638	COG2198	Histidine kinase
YpsIP31758_1639	COG0835	chemotaxis
YpsIP31758_1642	COG0840	transmembrane signaling receptor activity
YpsIP31758_1643	COG0840	transmembrane signaling receptor activity
YpsIP31758_1644	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
YpsIP31758_1646	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_1647	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
YpsIP31758_1649	COG3023	N-Acetylmuramoyl-L-alanine amidase
YpsIP31758_1650	COG5295	Hep Hag repeat protein
YpsIP31758_1650	COG5295	Hep Hag repeat protein
YpsIP31758_1650	COG5295	Hep Hag repeat protein
YpsIP31758_1652	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
YpsIP31758_1668	COG3008	intermembrane lipid transfer
YpsIP31758_1669	COG2995	paraquat-inducible protein a
YpsIP31758_1670	COG1956	GAF domain-containing protein
YpsIP31758_1672	COG0793	Belongs to the peptidase S41A family
YpsIP31758_1673	COG1943	Transposase
YpsIP31758_1675	COG3539	Fimbrial protein
YpsIP31758_1676	COG3121	Chaperone
YpsIP31758_1679	COG3121	Chaperone
YpsIP31758_1680	COG2814	Major facilitator Superfamily
YpsIP31758_1682	COG0823	Involved in the tonB-independent uptake of proteins
YpsIP31758_1684	COG3023	N-Acetylmuramoyl-L-alanine amidase
YpsIP31758_1686	COG1988	membrane-bound metal-dependent
YpsIP31758_1687	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
YpsIP31758_1688	COG1653	transport
YpsIP31758_1689	COG3842	ATPase activity
YpsIP31758_1690	COG0395	ABC-type sugar transport system, permease component
YpsIP31758_1691	COG1175	transmembrane transport
YpsIP31758_1693	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_1696	COG1917	Cupin 2, conserved barrel domain protein
YpsIP31758_1697	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
YpsIP31758_1702	COG1108	ABC-type Mn2 Zn2 transport systems permease components
YpsIP31758_1703	COG1108	ABC-type Mn2 Zn2 transport systems permease components
YpsIP31758_1704	COG1121	(ABC) transporter
YpsIP31758_1705	COG0803	Belongs to the bacterial solute-binding protein 9 family
YpsIP31758_1711	COG4249	Peptidase C14 caspase catalytic subunit p20
YpsIP31758_1718	COG0776	regulation of translation
YpsIP31758_1721	COG0386	Belongs to the glutathione peroxidase family
YpsIP31758_1722	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
YpsIP31758_1725	COG1943	Transposase
YpsIP31758_1732	COG0791	NLP P60 protein
YpsIP31758_1737	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
YpsIP31758_1737	COG0574	Belongs to the PEP-utilizing enzyme family
YpsIP31758_1738	COG0628	permease
YpsIP31758_1739	COG0277	FAD linked oxidase domain protein
YpsIP31758_1739	COG0247	lactate metabolic process
YpsIP31758_1740	COG2050	protein possibly involved in aromatic compounds catabolism
YpsIP31758_1741	COG0316	Belongs to the HesB IscA family
YpsIP31758_1742	COG0719	Fe-S assembly protein
YpsIP31758_1743	COG0396	ATPase activity
YpsIP31758_1744	COG0719	Fe-S assembly protein
YpsIP31758_1747	COG1388	LysM domain
YpsIP31758_1747	COG1376	ErfK ybiS ycfS ynhG family protein
YpsIP31758_1748	COG4238	major outer membrane lipoprotein
YpsIP31758_1751	COG0307	riboflavin synthase, alpha
YpsIP31758_1752	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
YpsIP31758_1753	COG2814	Major facilitator Superfamily
YpsIP31758_1754	COG0583	DNA-binding transcription factor activity
YpsIP31758_1756	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
YpsIP31758_1757	COG0791	NLP P60 protein
YpsIP31758_1758	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
YpsIP31758_1760	COG0346	lactoylglutathione lyase activity
YpsIP31758_1762	COG1902	pentaerythritol trinitrate reductase activity
YpsIP31758_1763	COG1309	transcriptional regulator
YpsIP31758_1764	COG2194	sulfuric ester hydrolase activity
YpsIP31758_1765	COG3313	Fe-S protein
YpsIP31758_1766	COG4989	oxidoreductase activity
YpsIP31758_1768	COG1943	Transposase
YpsIP31758_1769	COG3133	Outer membrane lipoprotein
YpsIP31758_1771	COG3895	Periplasmic Protein
YpsIP31758_1775	COG0625	glutathione transferase activity
YpsIP31758_1778	COG3104	oligopeptide transport
YpsIP31758_1779	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
YpsIP31758_1779	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
YpsIP31758_1780	COG4172	Belongs to the ABC transporter superfamily
YpsIP31758_1782	COG4171	peptide transport system, permease
YpsIP31758_1783	COG4168	peptide transport system, permease
YpsIP31758_1784	COG4166	transmembrane transport
YpsIP31758_1785	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
YpsIP31758_1786	COG1842	Phage shock protein A
YpsIP31758_1788	COG1983	PspC domain protein
YpsIP31758_1790	COG3106	COG3106 Predicted ATPase
YpsIP31758_1795	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
YpsIP31758_1796	COG4948	Mandelate Racemase Muconate Lactonizing
YpsIP31758_1797	COG2866	Carboxypeptidase
YpsIP31758_1798	COG4166	transmembrane transport
YpsIP31758_1801	COG0657	acetylesterase activity
YpsIP31758_1801	COG2755	lipolytic protein G-D-S-L family
YpsIP31758_1803	COG1013	pyruvate-flavodoxin oxidoreductase activity
YpsIP31758_1803	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
YpsIP31758_1803	COG0674	pyruvate-flavodoxin oxidoreductase activity
YpsIP31758_1803	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
YpsIP31758_1805	COG1285	pathogenesis
YpsIP31758_1806	COG3042	response to heat
YpsIP31758_1807	COG3187	Heat shock protein
YpsIP31758_1808	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
YpsIP31758_1809	COG2911	Protein conserved in bacteria
YpsIP31758_1811	COG3784	Protein of unknown function (DUF1318)
YpsIP31758_1812	COG0246	Mannitol dehydrogenase
YpsIP31758_1813	COG2390	Transcriptional regulator
YpsIP31758_1815	COG1643	Atp-dependent helicase
YpsIP31758_1818	COG3591	Belongs to the peptidase S1B family
YpsIP31758_1820	COG3038	cytochrome b561
YpsIP31758_1824	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
YpsIP31758_1825	COG2205	protein histidine kinase activity
YpsIP31758_1826	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_1828	COG0531	amino acid
YpsIP31758_1830	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
YpsIP31758_1831	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
YpsIP31758_1832	COG0589	response to stress
YpsIP31758_1833	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
YpsIP31758_1834	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
YpsIP31758_1837	COG1011	Hydrolase
YpsIP31758_1838	COG0440	acetolactate synthase activity
YpsIP31758_1839	COG0028	Belongs to the TPP enzyme family
YpsIP31758_1846	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
YpsIP31758_1848	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
YpsIP31758_1849	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
YpsIP31758_1851	COG1129	ABC transporter
YpsIP31758_1852	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_1853	COG1879	ABC-type sugar transport system periplasmic component
YpsIP31758_1855	COG1609	Transcriptional regulator
YpsIP31758_1856	COG1757	Na H antiporter
YpsIP31758_1857	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
YpsIP31758_1862	COG1012	belongs to the aldehyde dehydrogenase family
YpsIP31758_1863	COG3284	Transcriptional regulator
YpsIP31758_1864	COG4221	oxidoreductase activity
YpsIP31758_1868	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
YpsIP31758_1869	COG1940	carbohydrate kinase activity
YpsIP31758_1870	COG0583	DNA-binding transcription factor activity
YpsIP31758_1871	COG2814	Major facilitator Superfamily
YpsIP31758_1873	COG0114	fumarate hydratase activity
YpsIP31758_1875	COG5339	Protein conserved in bacteria
YpsIP31758_1880	COG0385	Bile acid
YpsIP31758_1881	COG0673	inositol 2-dehydrogenase activity
YpsIP31758_1883	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_1885	COG1879	ABC-type sugar transport system periplasmic component
YpsIP31758_1889	COG2274	protein secretion by the type I secretion system
YpsIP31758_1897	COG2207	Transcriptional regulator
YpsIP31758_1897	COG3708	Transcriptional regulator
YpsIP31758_1899	COG4659	FMN binding
YpsIP31758_1901	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
YpsIP31758_1902	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
YpsIP31758_1903	COG2271	Major facilitator Superfamily
YpsIP31758_1905	COG1966	Carbon starvation protein
YpsIP31758_1907	COG2879	small protein
YpsIP31758_1908	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
YpsIP31758_1912	COG0023	Translation Initiation Factor
YpsIP31758_1915	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
YpsIP31758_1916	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
YpsIP31758_1917	COG0671	phosphoesterase, PA-phosphatase related
YpsIP31758_1919	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
YpsIP31758_1920	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
YpsIP31758_1922	COG0583	DNA-binding transcription factor activity
YpsIP31758_1923	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
YpsIP31758_1925	COG0616	signal peptide processing
YpsIP31758_1926	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_1928	COG1187	pseudouridine synthase activity
YpsIP31758_1929	COG0009	L-threonylcarbamoyladenylate synthase
YpsIP31758_1933	COG0512	Glutamine amidotransferase of anthranilate synthase
YpsIP31758_1935	COG0135	phosphoribosylanthranilate isomerase activity
YpsIP31758_1935	COG0134	indole-3-glycerol-phosphate synthase activity
YpsIP31758_1940	COG3047	cAMP biosynthetic process
YpsIP31758_1945	COG1607	acyl-coa hydrolase
YpsIP31758_1946	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
YpsIP31758_1947	COG2350	Protein conserved in bacteria
YpsIP31758_1956	COG4608	Belongs to the ABC transporter superfamily
YpsIP31758_1957	COG0444	Belongs to the ABC transporter superfamily
YpsIP31758_1958	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
YpsIP31758_1959	COG0601	transmembrane transport
YpsIP31758_1962	COG2095	MarC family integral membrane protein
YpsIP31758_1963	COG1454	alcohol dehydrogenase
YpsIP31758_1963	COG1012	belongs to the aldehyde dehydrogenase family
YpsIP31758_1964	COG1435	thymidine kinase activity
YpsIP31758_1967	COG1943	Transposase
YpsIP31758_1969	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_1971	COG0788	formyltetrahydrofolate deformylase activity
YpsIP31758_1974	COG0583	DNA-binding transcription factor activity
YpsIP31758_1976	COG0708	Exodeoxyribonuclease III
YpsIP31758_1977	COG0494	nUDIX hydrolase
YpsIP31758_1979	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
YpsIP31758_1981	COG0778	Nitroreductase
YpsIP31758_1982	COG0616	signal peptide processing
YpsIP31758_1983	COG0252	asparaginase activity
YpsIP31758_1984	COG1335	isochorismatase
YpsIP31758_1985	COG3139	Protein of unknown function (DUF1315)
YpsIP31758_1990	COG3713	MltA-interacting MipA family protein
YpsIP31758_1991	COG2766	serine protein kinase
YpsIP31758_1994	COG0583	DNA-binding transcription factor activity
YpsIP31758_1996	COG2814	Major facilitator Superfamily
YpsIP31758_1998	COG2719	SpoVR family
YpsIP31758_2004	COG1104	cysteine desulfurase activity
YpsIP31758_2007	COG0179	Fumarylacetoacetate (FAA) hydrolase
YpsIP31758_2008	COG2951	lytic endotransglycosylase activity
YpsIP31758_2011	COG2894	cell division
YpsIP31758_2012	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
YpsIP31758_2013	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
YpsIP31758_2014	COG0318	PFAM AMP-dependent synthetase and ligase
YpsIP31758_2015	COG3065	identical protein binding
YpsIP31758_2017	COG1199	ATP-dependent helicase activity
YpsIP31758_2018	COG0251	oxidation-reduction process
YpsIP31758_2021	COG0800	Aldolase
YpsIP31758_2022	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
YpsIP31758_2023	COG1737	Transcriptional regulator
YpsIP31758_2024	COG0469	pyruvate kinase activity
YpsIP31758_2025	COG1560	Kdo2-lipid A biosynthetic process
YpsIP31758_2026	COG0739	heme binding
YpsIP31758_2027	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
YpsIP31758_2029	COG1108	ABC-type Mn2 Zn2 transport systems permease components
YpsIP31758_2034	COG0494	nUDIX hydrolase
YpsIP31758_2036	COG1801	Protein of unknown function DUF72
YpsIP31758_2037	COG3788	relative of glutathione S-transferase, MAPEG superfamily
YpsIP31758_2041	COG3102	Protein conserved in bacteria
YpsIP31758_2046	COG0728	peptidoglycan biosynthetic process
YpsIP31758_2047	COG0673	inositol 2-dehydrogenase activity
YpsIP31758_2049	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
YpsIP31758_2052	COG3381	protein complex oligomerization
YpsIP31758_2054	COG1940	carbohydrate kinase activity
YpsIP31758_2055	COG0584	glycerophosphoryl diester phosphodiesterase
YpsIP31758_2057	COG1176	ABC-type spermidine putrescine transport system, permease component I
YpsIP31758_2058	COG3833	ABC-type maltose transport systems, permease component
YpsIP31758_2061	COG0659	secondary active sulfate transmembrane transporter activity
YpsIP31758_2063	COG2912	Transglutaminase-like superfamily
YpsIP31758_2064	COG3094	Invasion gene expression up-regulator, SirB
YpsIP31758_2065	COG2890	protein-(glutamine-N5) methyltransferase activity
YpsIP31758_2070	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
YpsIP31758_2075	COG0012	GTP binding
YpsIP31758_2085	COG5002	protein histidine kinase activity
YpsIP31758_2094	COG0500	methyltransferase
YpsIP31758_2107	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
YpsIP31758_2108	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
YpsIP31758_2111	COG0402	S-adenosylhomocysteine deaminase activity
YpsIP31758_2122	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
YpsIP31758_2123	COG3850	Histidine kinase
YpsIP31758_2124	COG0387	Pfam Sodium calcium exchanger
YpsIP31758_2125	COG1702	phosphate starvation-inducible protein PhoH
YpsIP31758_2128	COG3658	cytochrome
YpsIP31758_2129	COG1215	transferase activity, transferring glycosyl groups
YpsIP31758_2130	COG1649	PFAM Uncharacterised BCR, COG1649
YpsIP31758_2130	COG0726	polysaccharide deacetylase
YpsIP31758_2131	COG0457	Tetratricopeptide repeat
YpsIP31758_2132	COG0006	proline dipeptidase activity
YpsIP31758_2136	COG1136	(ABC) transporter
YpsIP31758_2136	COG0577	efflux transmembrane transporter activity
YpsIP31758_2138	COG0577	efflux transmembrane transporter activity
YpsIP31758_2138	COG1136	(ABC) transporter
YpsIP31758_2141	COG0672	)-iron permease
YpsIP31758_2143	COG2066	Belongs to the glutaminase family
YpsIP31758_2145	COG1349	DNA-binding transcription factor activity
YpsIP31758_2148	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
YpsIP31758_2149	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
YpsIP31758_2157	COG2030	dehydratase
YpsIP31758_2158	COG0427	acetyl-CoA hydrolase
YpsIP31758_2161	COG2205	protein histidine kinase activity
YpsIP31758_2161	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
YpsIP31758_2165	COG3188	usher protein
YpsIP31758_2167	COG3121	Chaperone
YpsIP31758_2170	COG0395	ABC-type sugar transport system, permease component
YpsIP31758_2171	COG1175	transmembrane transport
YpsIP31758_2173	COG0673	inositol 2-dehydrogenase activity
YpsIP31758_2197	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
YpsIP31758_2222	COG3566	protein conserved in bacteria
YpsIP31758_2224	COG3567	Phage-associated protein, HI1409 family
YpsIP31758_2226	COG3077	Addiction module antitoxin, RelB DinJ family
YpsIP31758_2227	COG2026	Addiction module toxin, RelE StbE family
YpsIP31758_2231	COG1475	DNA binding
YpsIP31758_2236	COG3772	lysozyme
YpsIP31758_2244	COG0305	Participates in initiation and elongation during chromosome replication
YpsIP31758_2253	COG2197	response regulator
YpsIP31758_2255	COG3136	membrane protein required for alginate biosynthesis
YpsIP31758_2259	COG1113	amino acid transport
YpsIP31758_2262	COG2837	iron assimilation
YpsIP31758_2268	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
YpsIP31758_2268	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
YpsIP31758_2268	COG0506	proline dehydrogenase activity
YpsIP31758_2280	COG1191	sigma factor activity
YpsIP31758_2287	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
YpsIP31758_2288	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
YpsIP31758_2289	COG1677	Flagellar hook-basal body complex protein FliE
YpsIP31758_2291	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
YpsIP31758_2293	COG1157	protein secretion by the type III secretion system
YpsIP31758_2294	COG2882	bacterial-type flagellum organization
YpsIP31758_2298	COG1580	Controls the rotational direction of flagella during chemotaxis
YpsIP31758_2303	COG1987	bacterial-type flagellum assembly
YpsIP31758_2306	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
YpsIP31758_2307	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_2308	COG1129	ABC transporter
YpsIP31758_2310	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_2311	COG3347	Dehydrogenase
YpsIP31758_2311	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_2312	COG2390	Transcriptional regulator
YpsIP31758_2314	COG1256	bacterial-type flagellum assembly
YpsIP31758_2319	COG4786	Flagellar basal body rod
YpsIP31758_2321	COG1749	Flagellar hook protein flgE
YpsIP31758_2322	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
YpsIP31758_2323	COG1558	bacterial-type flagellum-dependent cell motility
YpsIP31758_2324	COG1815	bacterial-type flagellum-dependent cell motility
YpsIP31758_2327	COG2747	anti-sigma28 factor FlgM
YpsIP31758_2328	COG3418	PFAM FlgN family protein
YpsIP31758_2333	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
YpsIP31758_2334	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
YpsIP31758_2339	COG2372	response to copper ion
YpsIP31758_2341	COG1528	Iron-storage protein
YpsIP31758_2346	COG1770	oligopeptidase
YpsIP31758_2349	COG3141	response to X-ray
YpsIP31758_2350	COG0513	Belongs to the DEAD box helicase family
YpsIP31758_2355	COG1760	l-serine dehydratase
YpsIP31758_2356	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
YpsIP31758_2357	COG2368	4-hydroxyphenylacetate
YpsIP31758_2360	COG3971	2-oxopent-4-enoate hydratase activity
YpsIP31758_2362	COG3384	dioxygenase
YpsIP31758_2363	COG1012	belongs to the aldehyde dehydrogenase family
YpsIP31758_2366	COG1846	Transcriptional regulator
YpsIP31758_2367	COG1253	flavin adenine dinucleotide binding
YpsIP31758_2368	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
YpsIP31758_2368	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
YpsIP31758_2369	COG3715	PTS system
YpsIP31758_2370	COG3716	PTS system mannose fructose sorbose family IID component
YpsIP31758_2374	COG5002	protein histidine kinase activity
YpsIP31758_2374	COG5001	Diguanylate cyclase
YpsIP31758_2374	COG3447	MASE1 domain protein
YpsIP31758_2376	COG2226	methyltransferase
YpsIP31758_2381	COG1113	amino acid transport
YpsIP31758_2387	COG2207	Transcriptional regulator
YpsIP31758_2389	COG1132	(ABC) transporter
YpsIP31758_2394	COG2223	nitrite transmembrane transporter activity
YpsIP31758_2399	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
YpsIP31758_2403	COG3122	Protein conserved in bacteria
YpsIP31758_2407	COG0534	Mate efflux family protein
YpsIP31758_2410	COG4948	Mandelate Racemase Muconate Lactonizing
YpsIP31758_2412	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_2413	COG3011	Protein conserved in bacteria
YpsIP31758_2414	COG2271	Major facilitator Superfamily
YpsIP31758_2416	COG1388	LysM domain
YpsIP31758_2416	COG1470	cell adhesion involved in biofilm formation
YpsIP31758_2420	COG2925	Exonuclease
YpsIP31758_2421	COG0531	amino acid
YpsIP31758_2422	COG0371	Dehydrogenase
YpsIP31758_2423	COG1129	ABC transporter
YpsIP31758_2424	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_2426	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
YpsIP31758_2429	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
YpsIP31758_2432	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
YpsIP31758_2435	COG0140	phosphoribosyl-ATP diphosphatase activity
YpsIP31758_2435	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
YpsIP31758_2437	COG1210	Utp--glucose-1-phosphate uridylyltransferase
YpsIP31758_2438	COG1210	Utp--glucose-1-phosphate uridylyltransferase
YpsIP31758_2441	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
YpsIP31758_2442	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
YpsIP31758_2443	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
YpsIP31758_2444	COG1120	ATPase activity
YpsIP31758_2447	COG3486	L-lysine 6-monooxygenase (NADPH) activity
YpsIP31758_2448	COG0076	glutamate decarboxylase activity
YpsIP31758_2449	COG4114	ferric iron reductase
YpsIP31758_2450	COG1253	flavin adenine dinucleotide binding
YpsIP31758_2451	COG2982	Protein involved in outer membrane biogenesis
YpsIP31758_2454	COG0489	protein tyrosine kinase activity
YpsIP31758_2459	COG2814	Major facilitator Superfamily
YpsIP31758_2461	COG1346	cytolysis
YpsIP31758_2464	COG2949	membrane
YpsIP31758_2465	COG4211	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_2469	COG2311	Membrane
YpsIP31758_2471	COG0477	Major facilitator Superfamily
YpsIP31758_2472	COG0583	DNA-binding transcription factor activity
YpsIP31758_2478	COG1136	(ABC) transporter
YpsIP31758_2480	COG0303	'Molybdopterin
YpsIP31758_2483	COG0488	(ABC) transporter
YpsIP31758_2512	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
YpsIP31758_2513	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
YpsIP31758_2515	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_2516	COG1024	Enoyl-CoA hydratase
YpsIP31758_2518	COG3425	synthase
YpsIP31758_2519	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_2520	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
YpsIP31758_2521	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
YpsIP31758_2523	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_2529	COG2920	part of a sulfur-relay system
YpsIP31758_2533	COG1832	CoA-binding protein
YpsIP31758_2534	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
YpsIP31758_2536	COG0210	DNA helicase
YpsIP31758_2537	COG3304	Inner membrane component domain
YpsIP31758_2538	COG1289	transmembrane transporter activity
YpsIP31758_2539	COG3070	regulator of competence-specific genes
YpsIP31758_2542	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
YpsIP31758_2542	COG2885	chlorophyll binding
YpsIP31758_2543	COG1943	Transposase
YpsIP31758_2545	COG1067	ATP-dependent peptidase activity
YpsIP31758_2547	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
YpsIP31758_2548	COG3009	Protein conserved in bacteria
YpsIP31758_2549	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
YpsIP31758_2549	COG3008	intermembrane lipid transfer
YpsIP31758_2550	COG2995	paraquat-inducible protein a
YpsIP31758_2551	COG0488	(ABC) transporter
YpsIP31758_2553	COG3217	Mosc domain protein beta barrel domain protein
YpsIP31758_2553	COG0633	Ferredoxin
YpsIP31758_2556	COG0308	aminopeptidase N
YpsIP31758_2560	COG1448	Aminotransferase
YpsIP31758_2561	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
YpsIP31758_2562	COG3108	Peptidase M15
YpsIP31758_2563	COG2989	Protein conserved in bacteria
YpsIP31758_2566	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
YpsIP31758_2567	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
YpsIP31758_2568	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
YpsIP31758_2570	COG3173	Aminoglycoside phosphotransferase
YpsIP31758_2572	COG2835	tetraacyldisaccharide 4'-kinase activity
YpsIP31758_2574	COG1278	Cold shock
YpsIP31758_2575	COG5383	Protein conserved in bacteria
YpsIP31758_2578	COG2333	competence protein COMEC
YpsIP31758_2578	COG0658	competence protein
YpsIP31758_2580	COG0539	negative regulation of cytoplasmic translation
YpsIP31758_2586	COG0252	asparaginase activity
YpsIP31758_2587	COG1944	ATP diphosphatase activity
YpsIP31758_2588	COG2116	formate transmembrane transporter activity
YpsIP31758_2589	COG1882	Formate acetyltransferase
YpsIP31758_2591	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
YpsIP31758_2592	COG2814	Major facilitator Superfamily
YpsIP31758_2594	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
YpsIP31758_2596	COG3107	peptidoglycan biosynthetic process
YpsIP31758_2596	COG1674	ftsk spoiiie
YpsIP31758_2598	COG0492	ferredoxin-NADP+ reductase activity
YpsIP31758_2601	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
YpsIP31758_2604	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
YpsIP31758_2606	COG0542	response to heat
YpsIP31758_2609	COG1278	Cold shock
YpsIP31758_2611	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
YpsIP31758_2613	COG2990	Protein conserved in bacteria
YpsIP31758_2614	COG3593	DNA synthesis involved in DNA repair
YpsIP31758_2616	COG2431	L-lysine efflux transmembrane transporter activity
YpsIP31758_2618	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
YpsIP31758_2619	COG0028	Belongs to the TPP enzyme family
YpsIP31758_2620	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
YpsIP31758_2621	COG0702	epimerase
YpsIP31758_2622	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
YpsIP31758_2624	COG1605	Chorismate mutase
YpsIP31758_2625	COG1126	abc transporter atp-binding protein
YpsIP31758_2626	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
YpsIP31758_2627	COG4215	(ABC) transporter
YpsIP31758_2628	COG4160	amino acid transport
YpsIP31758_2633	COG1120	ATPase activity
YpsIP31758_2634	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
YpsIP31758_2639	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
YpsIP31758_2642	COG1177	transmembrane transport
YpsIP31758_2643	COG1176	ABC-type spermidine putrescine transport system, permease component I
YpsIP31758_2644	COG3842	ATPase activity
YpsIP31758_2645	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
YpsIP31758_2648	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
YpsIP31758_2649	COG0569	domain protein
YpsIP31758_2649	COG2985	domain, Protein
YpsIP31758_2651	COG0671	phosphoesterase, PA-phosphatase related
YpsIP31758_2653	COG1349	DNA-binding transcription factor activity
YpsIP31758_2656	COG0814	amino acid
YpsIP31758_2659	COG1686	Belongs to the peptidase S11 family
YpsIP31758_2660	COG2011	ABC-type metal ion transport system permease component
YpsIP31758_2665	COG0625	glutathione transferase activity
YpsIP31758_2666	COG4771	TonB-dependent receptor
YpsIP31758_2668	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
YpsIP31758_2670	COG0833	amino acid
YpsIP31758_2672	COG0583	DNA-binding transcription factor activity
YpsIP31758_2674	COG2855	membrane
YpsIP31758_2676	COG3188	usher protein
YpsIP31758_2677	COG3121	Chaperone
YpsIP31758_2680	COG3710	Transcriptional regulator
YpsIP31758_2681	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
YpsIP31758_2681	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
YpsIP31758_2681	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
YpsIP31758_2682	COG1105	Belongs to the carbohydrate kinase PfkB family
YpsIP31758_2687	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_2688	COG1129	ABC transporter
YpsIP31758_2690	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
YpsIP31758_2695	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_2702	COG0246	Mannitol dehydrogenase
YpsIP31758_2703	COG2186	Transcriptional regulator
YpsIP31758_2705	COG0523	cobalamin synthesis protein
YpsIP31758_2706	COG0671	phosphoesterase, PA-phosphatase related
YpsIP31758_2707	COG0791	NLP P60 protein
YpsIP31758_2710	COG2200	EAL domain
YpsIP31758_2711	COG4166	transmembrane transport
YpsIP31758_2712	COG4174	ABC transporter (Permease)
YpsIP31758_2713	COG4239	(ABC) transporter, permease
YpsIP31758_2714	COG4172	Belongs to the ABC transporter superfamily
YpsIP31758_2717	COG2814	Major facilitator Superfamily
YpsIP31758_2718	COG1187	pseudouridine synthase activity
YpsIP31758_2719	COG1061	Type III restriction enzyme res subunit
YpsIP31758_2722	COG3082	Protein of unknown function (DUF1414)
YpsIP31758_2723	COG3083	sulfuric ester hydrolase activity
YpsIP31758_2725	COG3157	Type VI secretion system effector, Hcp
YpsIP31758_2729	COG2723	6-phospho-beta-galactosidase activity
YpsIP31758_2730	COG1737	Transcriptional regulator
YpsIP31758_2733	COG3299	homolog of phage Mu protein gp47
YpsIP31758_2741	COG4386	tail sheath protein
YpsIP31758_2745	COG3622	Belongs to the hyi family
YpsIP31758_2746	COG1349	DNA-binding transcription factor activity
YpsIP31758_2747	COG0235	Class ii aldolase
YpsIP31758_2748	COG3395	kinase activity
YpsIP31758_2758	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
YpsIP31758_2761	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
YpsIP31758_2762	COG2223	nitrite transmembrane transporter activity
YpsIP31758_2763	COG2198	Histidine kinase
YpsIP31758_2763	COG0642	Histidine kinase
YpsIP31758_2765	COG0784	Response regulator, receiver
YpsIP31758_2765	COG2205	protein histidine kinase activity
YpsIP31758_2771	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
YpsIP31758_2774	COG0814	amino acid
YpsIP31758_2779	COG0697	spore germination
YpsIP31758_2781	COG1982	Orn Lys Arg decarboxylase major
YpsIP31758_2782	COG0531	amino acid
YpsIP31758_2783	COG1174	glycine betaine transport
YpsIP31758_2784	COG1125	glycine betaine transport
YpsIP31758_2785	COG1174	glycine betaine transport
YpsIP31758_2786	COG1732	Glycine betaine
YpsIP31758_2787	COG2897	thiosulfate sulfurtransferase activity
YpsIP31758_2790	COG0410	ABC transporter
YpsIP31758_2791	COG1122	ATPase activity
YpsIP31758_2795	COG4807	Protein conserved in bacteria
YpsIP31758_2798	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
YpsIP31758_2800	COG2261	transglycosylase associated protein
YpsIP31758_2803	COG1403	HNH endonuclease
YpsIP31758_2805	COG0277	FAD linked oxidase domain protein
YpsIP31758_2806	COG1686	Belongs to the peptidase S11 family
YpsIP31758_2808	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
YpsIP31758_2810	COG0513	Belongs to the DEAD box helicase family
YpsIP31758_2811	COG1309	transcriptional regulator
YpsIP31758_2813	COG1131	(ABC) transporter
YpsIP31758_2814	COG0842	Transport permease protein
YpsIP31758_2815	COG0842	Transport permease protein
YpsIP31758_2819	COG1902	pentaerythritol trinitrate reductase activity
YpsIP31758_2823	COG2211	Major facilitator Superfamily
YpsIP31758_2824	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
YpsIP31758_2826	COG0583	DNA-binding transcription factor activity
YpsIP31758_2828	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
YpsIP31758_2832	COG0670	Belongs to the BI1 family
YpsIP31758_2833	COG0314	molybdopterin synthase activity
YpsIP31758_2834	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
YpsIP31758_2836	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
YpsIP31758_2837	COG0391	Required for morphogenesis under gluconeogenic growth conditions
YpsIP31758_2838	COG4628	conserved protein (DUF2132)
YpsIP31758_2841	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
YpsIP31758_2842	COG2226	methyltransferase
YpsIP31758_2847	COG0561	phosphatase activity
YpsIP31758_2849	COG4149	molybdate abc transporter
YpsIP31758_2850	COG0725	ABC transporter, periplasmic molybdate-binding protein
YpsIP31758_2852	COG2005	Transcriptional regulator
YpsIP31758_2852	COG3585	molybdate ion transport
YpsIP31758_2853	COG1119	ATPase activity
YpsIP31758_2855	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
YpsIP31758_2856	COG1085	galactose-1-phosphate uridylyltransferase
YpsIP31758_2858	COG2017	converts alpha-aldose to the beta-anomer
YpsIP31758_2862	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
YpsIP31758_2863	COG1230	cation diffusion facilitator family transporter
YpsIP31758_2866	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
YpsIP31758_2867	COG2885	chlorophyll binding
YpsIP31758_2869	COG3064	Membrane
YpsIP31758_2869	COG3064	Membrane
YpsIP31758_2870	COG0848	biopolymer transport protein
YpsIP31758_2871	COG0811	peptide transport
YpsIP31758_2872	COG0824	Thioesterase
YpsIP31758_2873	COG3790	cyd operon protein YbgE
YpsIP31758_2874	COG4890	Cyd operon protein YbgT
YpsIP31758_2875	COG1294	oxidase, subunit
YpsIP31758_2876	COG1271	oxidase subunit
YpsIP31758_2877	COG1943	Transposase
YpsIP31758_2878	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
YpsIP31758_2880	COG0508	dehydrogenase complex catalyzes the overall conversion of
YpsIP31758_2881	COG0567	Dehydrogenase, E1 component
YpsIP31758_2883	COG1053	succinate dehydrogenase
YpsIP31758_2884	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
YpsIP31758_2885	COG2009	succinate dehydrogenase
YpsIP31758_2888	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
YpsIP31758_2889	COG0497	DNA recombination
YpsIP31758_2890	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
YpsIP31758_2892	COG2867	negative regulation of translational initiation
YpsIP31758_2895	COG0582	viral genome integration into host DNA
YpsIP31758_2896	COG2963	transposase activity
YpsIP31758_2898	COG0596	Alpha beta hydrolase
YpsIP31758_2902	COG0735	belongs to the Fur family
YpsIP31758_2908	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
YpsIP31758_2908	COG2190	(PTS) system
YpsIP31758_2908	COG1263	PTS System
YpsIP31758_2910	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
YpsIP31758_2911	COG1940	carbohydrate kinase activity
YpsIP31758_2911	COG1846	Transcriptional regulator
YpsIP31758_2912	COG0647	UMP catabolic process
YpsIP31758_2913	COG0367	asparagine synthase
YpsIP31758_2914	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
YpsIP31758_2916	COG1702	phosphate starvation-inducible protein PhoH
YpsIP31758_2918	COG4535	Mg2 and Co2 transporter CorC
YpsIP31758_2919	COG0815	Transfers the fatty acyl group on membrane lipoproteins
YpsIP31758_2921	COG0765	amino acid transport
YpsIP31758_2922	COG0765	amino acid transport
YpsIP31758_2923	COG1126	abc transporter atp-binding protein
YpsIP31758_2924	COG2888	peptidyl-tyrosine sulfation
YpsIP31758_2928	COG1466	dna polymerase III delta subunit
YpsIP31758_2946	COG0582	viral genome integration into host DNA
YpsIP31758_2947	COG0799	negative regulation of ribosome biogenesis
YpsIP31758_2949	COG0768	penicillin binding
YpsIP31758_2950	COG0772	Belongs to the SEDS family
YpsIP31758_2951	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
YpsIP31758_2952	COG1686	Belongs to the peptidase S11 family
YpsIP31758_2956	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
YpsIP31758_2957	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
YpsIP31758_2958	COG1278	Cold shock
YpsIP31758_2959	COG1278	Cold shock
YpsIP31758_2960	COG2197	response regulator
YpsIP31758_2965	COG5265	(ABC) transporter
YpsIP31758_2967	COG3718	enzyme involved in inositol metabolism
YpsIP31758_2969	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
YpsIP31758_2970	COG0673	inositol 2-dehydrogenase activity
YpsIP31758_2971	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_2972	COG1129	ABC transporter
YpsIP31758_2973	COG1879	ABC-type sugar transport system periplasmic component
YpsIP31758_2974	COG0673	inositol 2-dehydrogenase activity
YpsIP31758_2976	COG3962	Belongs to the TPP enzyme family
YpsIP31758_2979	COG2373	Large extracellular alpha-helical protein
YpsIP31758_2980	COG4953	penicillin-binding protein 1C
YpsIP31758_2981	COG3423	Transcriptional regulator
YpsIP31758_2988	COG2850	peptidyl-arginine hydroxylation
YpsIP31758_2990	COG1187	pseudouridine synthase activity
YpsIP31758_2998	COG0656	L-ascorbic acid biosynthetic process
YpsIP31758_2999	COG0667	Aldo Keto reductase
YpsIP31758_3002	COG0671	phosphoesterase, PA-phosphatase related
YpsIP31758_3002	COG2453	phosphatase
YpsIP31758_3003	COG2267	carboxylic ester hydrolase activity
YpsIP31758_3005	COG4589	Belongs to the CDS family
YpsIP31758_3006	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
YpsIP31758_3013	COG2501	S4 domain
YpsIP31758_3015	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
YpsIP31758_3017	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
YpsIP31758_3018	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
YpsIP31758_3019	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
YpsIP31758_3020	COG4181	ATPase activity
YpsIP31758_3021	COG2755	lipolytic protein G-D-S-L family
YpsIP31758_3022	COG0300	oxidoreductase activity
YpsIP31758_3023	COG3118	belongs to the thioredoxin family
YpsIP31758_3024	COG0330	HflC and HflK could
YpsIP31758_3025	COG1585	Membrane protein implicated in regulation of membrane protease activity
YpsIP31758_3026	COG0789	Transcriptional regulator
YpsIP31758_3027	COG2217	Heavy metal translocating P-type atpase
YpsIP31758_3028	COG3735	TraB family
YpsIP31758_3029	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
YpsIP31758_3032	COG0737	Belongs to the 5'-nucleotidase family
YpsIP31758_3033	COG2223	nitrite transmembrane transporter activity
YpsIP31758_3034	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
YpsIP31758_3034	COG4651	solute:proton antiporter activity
YpsIP31758_3035	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
YpsIP31758_3036	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
YpsIP31758_3040	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
YpsIP31758_3041	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
YpsIP31758_3048	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
YpsIP31758_3059	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
YpsIP31758_3064	COG3264	Mechanosensitive ion channel
YpsIP31758_3064	COG1196	nuclear chromosome segregation
YpsIP31758_3065	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
YpsIP31758_3066	COG1309	transcriptional regulator
YpsIP31758_3067	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
YpsIP31758_3068	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
YpsIP31758_3070	COG0257	Belongs to the bacterial ribosomal protein bL36 family
YpsIP31758_3074	COG3695	enzyme binding
YpsIP31758_3075	COG3126	Type III secretion system lipoprotein chaperone (YscW)
YpsIP31758_3076	COG1946	Acyl-CoA thioesterase
YpsIP31758_3077	COG0004	ammonium transporteR
YpsIP31758_3078	COG0347	Belongs to the P(II) protein family
YpsIP31758_3079	COG1132	(ABC) transporter
YpsIP31758_3080	COG1132	(ABC) transporter
YpsIP31758_3081	COG1522	sequence-specific DNA binding
YpsIP31758_3084	COG4533	DNA binding
YpsIP31758_3086	COG0824	Thioesterase
YpsIP31758_3087	COG1555	photosystem II stabilization
YpsIP31758_3088	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
YpsIP31758_3089	COG0776	regulation of translation
YpsIP31758_3090	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
YpsIP31758_3094	COG0271	Belongs to the BolA IbaG family
YpsIP31758_3095	COG3056	Lipoprotein
YpsIP31758_3096	COG2223	nitrite transmembrane transporter activity
YpsIP31758_3098	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
YpsIP31758_3099	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
YpsIP31758_3100	COG1845	cytochrome c oxidase, subunit III
YpsIP31758_3101	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
YpsIP31758_3103	COG2814	Major facilitator Superfamily
YpsIP31758_3106	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
YpsIP31758_3107	COG0693	protein deglycase activity
YpsIP31758_3111	COG0142	geranyltranstransferase activity
YpsIP31758_3113	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
YpsIP31758_3114	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
YpsIP31758_3117	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
YpsIP31758_3117	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
YpsIP31758_3120	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
YpsIP31758_3121	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
YpsIP31758_3122	COG1862	Preprotein translocase
YpsIP31758_3126	COG0450	alkyl hydroperoxide reductase
YpsIP31758_3127	COG1943	Transposase
YpsIP31758_3131	COG0366	Alpha amylase catalytic
YpsIP31758_3133	COG1114	Component of the transport system for branched-chain amino acids
YpsIP31758_3135	COG5002	protein histidine kinase activity
YpsIP31758_3136	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_3138	COG0420	3'-5' exonuclease activity
YpsIP31758_3139	COG0419	ATPase involved in DNA repair
YpsIP31758_3140	COG1940	carbohydrate kinase activity
YpsIP31758_3145	COG2226	methyltransferase
YpsIP31758_3155	COG0583	DNA-binding transcription factor activity
YpsIP31758_3156	COG2195	Cleaves the N-terminal amino acid of tripeptides
YpsIP31758_3160	COG1477	protein flavinylation
YpsIP31758_3164	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
YpsIP31758_3165	COG1805	sodium ion transport
YpsIP31758_3168	COG0121	glutamine amidotransferase
YpsIP31758_3169	COG3034	peptidoglycan biosynthetic process
YpsIP31758_3171	COG1960	acyl-CoA dehydrogenase activity
YpsIP31758_3173	COG3914	O-linked N-acetylglucosamine transferase SPINDLY family
YpsIP31758_3183	COG0436	Aminotransferase
YpsIP31758_3186	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
YpsIP31758_3197	COG2814	Major facilitator Superfamily
YpsIP31758_3198	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
YpsIP31758_3200	COG1846	Transcriptional regulator
YpsIP31758_3201	COG1566	PFAM secretion protein HlyD family protein
YpsIP31758_3202	COG2814	Major facilitator Superfamily
YpsIP31758_3203	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
YpsIP31758_3204	COG3118	belongs to the thioredoxin family
YpsIP31758_3206	COG0045	succinate-CoA ligase (ADP-forming) activity
YpsIP31758_3206	COG1042	CoA-binding domain protein
YpsIP31758_3206	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
YpsIP31758_3207	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
YpsIP31758_3208	COG5544	Lipoprotein
YpsIP31758_3212	COG0542	response to heat
YpsIP31758_3214	COG0564	pseudouridine synthase activity
YpsIP31758_3215	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
YpsIP31758_3216	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
YpsIP31758_3218	COG0077	Prephenate dehydratase
YpsIP31758_3218	COG1605	Chorismate mutase
YpsIP31758_3219	COG1605	Chorismate mutase
YpsIP31758_3219	COG0287	Prephenate dehydrogenase
YpsIP31758_3220	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
YpsIP31758_3221	COG3279	Response regulator of the LytR AlgR family
YpsIP31758_3222	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
YpsIP31758_3223	COG3137	Salt-induced outer membrane protein
YpsIP31758_3224	COG1943	Transposase
YpsIP31758_3230	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
YpsIP31758_3231	COG4137	Cytochrome C assembly protein
YpsIP31758_3232	COG4536	flavin adenine dinucleotide binding
YpsIP31758_3235	COG1238	metal cluster binding
YpsIP31758_3236	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
YpsIP31758_3237	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
YpsIP31758_3247	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
YpsIP31758_3248	COG3958	Transketolase
YpsIP31758_3249	COG3959	Transketolase, thiamine diphosphate binding domain
YpsIP31758_3250	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_3251	COG1129	ABC transporter
YpsIP31758_3255	COG3783	Cytochrome b(562)
YpsIP31758_3256	COG3038	cytochrome b561
YpsIP31758_3258	COG3381	protein complex oligomerization
YpsIP31758_3259	COG3302	dmso reductase anchor subunit
YpsIP31758_3260	COG0437	4 iron, 4 sulfur cluster binding
YpsIP31758_3261	COG0243	molybdopterin cofactor binding
YpsIP31758_3262	COG0235	Class ii aldolase
YpsIP31758_3264	COG1349	DNA-binding transcription factor activity
YpsIP31758_3266	COG1129	ABC transporter
YpsIP31758_3267	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_3268	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_3269	COG3623	hexulose-6-phosphate isomerase
YpsIP31758_3270	COG1070	Carbohydrate kinase
YpsIP31758_3271	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
YpsIP31758_3271	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
YpsIP31758_3273	COG0024	Methionine aminopeptidase
YpsIP31758_3276	COG4771	TonB-dependent receptor
YpsIP31758_3278	COG1858	cytochrome C peroxidase
YpsIP31758_3279	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
YpsIP31758_3282	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
YpsIP31758_3286	COG2376	Dihydroxyacetone kinase
YpsIP31758_3287	COG1028	Short-chain dehydrogenase reductase Sdr
YpsIP31758_3288	COG1063	alcohol dehydrogenase
YpsIP31758_3289	COG0698	ribose 5-phosphate isomerase
YpsIP31758_3293	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
YpsIP31758_3294	COG1388	LysM domain
YpsIP31758_3294	COG4942	peptidase
YpsIP31758_3302	COG0529	Catalyzes the synthesis of activated sulfate
YpsIP31758_3312	COG0720	synthase
YpsIP31758_3313	COG0602	queuosine metabolic process
YpsIP31758_3318	COG3956	TIGRFAM MazG family protein
YpsIP31758_3319	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
YpsIP31758_3320	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
YpsIP31758_3322	COG4999	Histidine kinase
YpsIP31758_3322	COG3850	Histidine kinase
YpsIP31758_3322	COG3437	response regulator, receiver
YpsIP31758_3322	COG2205	protein histidine kinase activity
YpsIP31758_3323	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
YpsIP31758_3327	COG2860	membrane
YpsIP31758_3331	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
YpsIP31758_3332	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
YpsIP31758_3333	COG1120	ATPase activity
YpsIP31758_3334	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
YpsIP31758_3335	COG1643	Atp-dependent helicase
YpsIP31758_3336	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
YpsIP31758_3338	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
YpsIP31758_3339	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
YpsIP31758_3340	COG0617	tRNA 3'-terminal CCA addition
YpsIP31758_3341	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YpsIP31758_3346	COG0726	polysaccharide deacetylase
YpsIP31758_3348	COG0842	Transport permease protein
YpsIP31758_3349	COG1131	(ABC) transporter
YpsIP31758_3350	COG0288	reversible hydration of carbon dioxide
YpsIP31758_3351	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
YpsIP31758_3352	COG2132	Multicopper oxidase
YpsIP31758_3357	COG0697	spore germination
YpsIP31758_3359	COG1049	propionate catabolic process, 2-methylcitrate cycle
YpsIP31758_3360	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
YpsIP31758_3362	COG0508	dehydrogenase complex catalyzes the overall conversion of
YpsIP31758_3363	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
YpsIP31758_3364	COG2186	Transcriptional regulator
YpsIP31758_3366	COG1113	amino acid transport
YpsIP31758_3367	COG3725	Membrane protein required for beta-lactamase induction
YpsIP31758_3368	COG3023	N-Acetylmuramoyl-L-alanine amidase
YpsIP31758_3370	COG4969	Belongs to the N-Me-Phe pilin family
YpsIP31758_3371	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
YpsIP31758_3372	COG1459	type II secretion system
YpsIP31758_3374	COG0237	dephospho-CoA kinase activity
YpsIP31758_3377	COG0494	nUDIX hydrolase
YpsIP31758_3382	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
YpsIP31758_3383	COG0849	cell division
YpsIP31758_3384	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
YpsIP31758_3388	COG0772	Belongs to the SEDS family
YpsIP31758_3391	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
YpsIP31758_3392	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
YpsIP31758_3393	COG0768	penicillin binding
YpsIP31758_3394	COG3116	cell division
YpsIP31758_3398	COG1943	Transposase
YpsIP31758_3399	COG1609	Transcriptional regulator
YpsIP31758_3401	COG0028	Belongs to the TPP enzyme family
YpsIP31758_3402	COG1022	Amp-dependent synthetase and ligase
YpsIP31758_3406	COG0473	3-isopropylmalate dehydrogenase activity
YpsIP31758_3409	COG2814	Major facilitator Superfamily
YpsIP31758_3413	COG1943	Transposase
YpsIP31758_3415	COG1178	ABC-type Fe3 transport system permease component
YpsIP31758_3417	COG0586	Pfam SNARE associated Golgi protein
YpsIP31758_3418	COG0417	DNA replication proofreading
YpsIP31758_3422	COG2885	chlorophyll binding
YpsIP31758_3422	COG3047	cAMP biosynthetic process
YpsIP31758_3429	COG3501	Rhs element vgr protein
YpsIP31758_3439	COG0564	pseudouridine synthase activity
YpsIP31758_3442	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
YpsIP31758_3449	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
YpsIP31758_3451	COG2966	Psort location CytoplasmicMembrane, score
YpsIP31758_3453	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
YpsIP31758_3454	COG0505	Belongs to the CarA family
YpsIP31758_3458	COG1047	Peptidyl-prolyl cis-trans
YpsIP31758_3461	COG0196	riboflavin kinase activity
YpsIP31758_3463	COG0583	DNA-binding transcription factor activity
YpsIP31758_3467	COG1584	GPR1 FUN34 yaaH family protein
YpsIP31758_3470	COG0521	Mo-molybdopterin cofactor biosynthetic process
YpsIP31758_3478	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_3479	COG3045	CreA protein
YpsIP31758_3481	COG3708	Transcriptional regulator
YpsIP31758_3481	COG2207	Transcriptional regulator
YpsIP31758_3482	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
YpsIP31758_3484	COG0741	lytic transglycosylase activity
YpsIP31758_3487	COG2199	diguanylate cyclase activity
YpsIP31758_3488	COG2885	chlorophyll binding
YpsIP31758_3489	COG0488	(ABC) transporter
YpsIP31758_3493	COG0560	Phosphoserine phosphatase
YpsIP31758_3494	COG3726	membrane protein affecting hemolysin expression
YpsIP31758_3498	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
YpsIP31758_3499	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
YpsIP31758_3500	COG0084	hydrolase, TatD family'
YpsIP31758_3501	COG4667	esterase of the alpha-beta hydrolase superfamily
YpsIP31758_3503	COG2823	Periplasmic or secreted lipoprotein
YpsIP31758_3505	COG0456	acetyltransferase
YpsIP31758_3506	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
YpsIP31758_3509	COG3706	GGDEF domain
YpsIP31758_3512	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
YpsIP31758_3513	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
YpsIP31758_3516	COG0859	PFAM glycosyl transferase family 9
YpsIP31758_3519	COG2390	Transcriptional regulator
YpsIP31758_3528	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
YpsIP31758_3528	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
YpsIP31758_3528	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
YpsIP31758_3529	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
YpsIP31758_3530	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
YpsIP31758_3531	COG2207	Transcriptional regulator
YpsIP31758_3532	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
YpsIP31758_3534	COG4269	membrane
YpsIP31758_3540	COG0582	viral genome integration into host DNA
YpsIP31758_3541	COG0795	lipopolysaccharide-transporting ATPase activity
YpsIP31758_3542	COG0795	lipopolysaccharide-transporting ATPase activity
YpsIP31758_3544	COG2927	DNA polymerase III (CHI subunit)
YpsIP31758_3548	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
YpsIP31758_3550	COG2731	YhcH YjgK YiaL family protein
YpsIP31758_3552	COG0601	transmembrane transport
YpsIP31758_3553	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
YpsIP31758_3554	COG0444	Belongs to the ABC transporter superfamily
YpsIP31758_3555	COG4608	Belongs to the ABC transporter superfamily
YpsIP31758_3559	COG2188	Transcriptional regulator
YpsIP31758_3560	COG3624	Phosphonate C-P lyase system protein PhnG
YpsIP31758_3561	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
YpsIP31758_3562	COG3626	phosphonate metabolism
YpsIP31758_3563	COG3627	carbon phosphorus lyase activity
YpsIP31758_3564	COG4107	phosphonate C-P lyase system protein PhnK
YpsIP31758_3565	COG4778	phosphonate C-P lyase system protein PhnL
YpsIP31758_3566	COG3454	Phosphonate metabolism
YpsIP31758_3567	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
YpsIP31758_3568	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
YpsIP31758_3569	COG0702	epimerase
YpsIP31758_3572	COG3842	ATPase activity
YpsIP31758_3573	COG0395	ABC-type sugar transport system, permease component
YpsIP31758_3575	COG1653	transport
YpsIP31758_3579	COG3153	acetyltransferase
YpsIP31758_3585	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
YpsIP31758_3587	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
YpsIP31758_3590	COG0513	Belongs to the DEAD box helicase family
YpsIP31758_3597	COG0195	Participates in both transcription termination and antitermination
YpsIP31758_3599	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
YpsIP31758_3601	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
YpsIP31758_3602	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
YpsIP31758_3604	COG1534	Rna-binding protein
YpsIP31758_3605	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YpsIP31758_3606	COG2027	D-alanyl-D-alanine carboxypeptidase
YpsIP31758_3607	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_3608	COG0642	Histidine kinase
YpsIP31758_3610	COG0697	spore germination
YpsIP31758_3613	COG0142	geranyltranstransferase activity
YpsIP31758_3615	COG3423	Transcriptional regulator
YpsIP31758_3620	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
YpsIP31758_3622	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
YpsIP31758_3623	COG2105	PFAM AIG2 family protein
YpsIP31758_3624	COG2911	Protein conserved in bacteria
YpsIP31758_3625	COG0729	surface antigen
YpsIP31758_3627	COG1253	flavin adenine dinucleotide binding
YpsIP31758_3629	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
YpsIP31758_3631	COG0737	Belongs to the 5'-nucleotidase family
YpsIP31758_3633	COG0545	Peptidyl-prolyl cis-trans isomerase
YpsIP31758_3634	COG3061	Opacity-associated protein A
YpsIP31758_3637	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
YpsIP31758_3639	COG0360	Binds together with S18 to 16S ribosomal RNA
YpsIP31758_3640	COG1073	alpha beta
YpsIP31758_3642	COG3650	response to hydrogen peroxide
YpsIP31758_3643	COG1960	acyl-CoA dehydrogenase activity
YpsIP31758_3644	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
YpsIP31758_3646	COG0557	exoribonuclease II activity
YpsIP31758_3649	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
YpsIP31758_3650	COG0330	HflC and HflK could
YpsIP31758_3651	COG0330	HflC and HflK could
YpsIP31758_3652	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
YpsIP31758_3656	COG0860	N-Acetylmuramoyl-L-alanine amidase
YpsIP31758_3657	COG0802	atpase or kinase
YpsIP31758_3658	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
YpsIP31758_3658	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
YpsIP31758_3660	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
YpsIP31758_3664	COG1511	domain protein
YpsIP31758_3664	COG3264	Mechanosensitive ion channel
YpsIP31758_3667	COG1053	succinate dehydrogenase
YpsIP31758_3668	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
YpsIP31758_3670	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
YpsIP31758_3671	COG2076	Multidrug Resistance protein
YpsIP31758_3679	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
YpsIP31758_3682	COG3383	formate dehydrogenase (NAD+) activity
YpsIP31758_3683	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
YpsIP31758_3684	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
YpsIP31758_3684	COG0493	'glutamate synthase
YpsIP31758_3685	COG1309	transcriptional regulator
YpsIP31758_3692	COG3209	COG3209 Rhs family protein
YpsIP31758_3695	COG3209	COG3209 Rhs family protein
YpsIP31758_3747	COG0305	Participates in initiation and elongation during chromosome replication
YpsIP31758_3758	COG1454	alcohol dehydrogenase
YpsIP31758_3760	COG0629	single-stranded DNA binding
YpsIP31758_3761	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YpsIP31758_3762	COG2315	Protein conserved in bacteria
YpsIP31758_3763	COG1448	Aminotransferase
YpsIP31758_3764	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
YpsIP31758_3765	COG0305	Participates in initiation and elongation during chromosome replication
YpsIP31758_3768	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
YpsIP31758_3769	COG0735	belongs to the Fur family
YpsIP31758_3771	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
YpsIP31758_3781	COG3121	Chaperone
YpsIP31758_3793	COG1358	cellular component organization or biogenesis
YpsIP31758_3798	COG3721	Heme iron utilization protein
YpsIP31758_3799	COG0702	epimerase
YpsIP31758_3801	COG4771	TonB-dependent receptor
YpsIP31758_3802	COG3720	iron ion transport
YpsIP31758_3803	COG4558	Periplasmic binding protein
YpsIP31758_3804	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
YpsIP31758_3806	COG0626	cystathionine gamma-synthase activity
YpsIP31758_3807	COG0814	amino acid
YpsIP31758_3808	COG0583	DNA-binding transcription factor activity
YpsIP31758_3809	COG0425	Belongs to the sulfur carrier protein TusA family
YpsIP31758_3810	COG2391	methyltransferase activity
YpsIP31758_3834	COG1301	dicarboxylic acid transport
YpsIP31758_3836	COG3162	membrane
YpsIP31758_3844	COG0151	Belongs to the GarS family
YpsIP31758_3847	COG3068	Protein conserved in bacteria
YpsIP31758_3853	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
YpsIP31758_3855	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
YpsIP31758_3858	COG1943	Transposase
YpsIP31758_3865	COG0250	Participates in transcription elongation, termination and antitermination
YpsIP31758_3866	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
YpsIP31758_3869	COG1943	Transposase
YpsIP31758_3876	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
YpsIP31758_3879	COG0551	DNA topoisomerase type I activity
YpsIP31758_3881	COG0758	DNA mediated transformation
YpsIP31758_3885	COG0569	domain protein
YpsIP31758_3887	COG3036	rescue of stalled ribosome
YpsIP31758_3888	COG0789	Transcriptional regulator
YpsIP31758_3891	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
YpsIP31758_3894	COG0201	protein transport
YpsIP31758_3896	COG1841	ribosomal large subunit assembly
YpsIP31758_3904	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
YpsIP31758_3905	COG1943	Transposase
YpsIP31758_3908	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
YpsIP31758_3909	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
YpsIP31758_3911	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YpsIP31758_3916	COG0051	transcription antitermination factor activity, RNA binding
YpsIP31758_3920	COG0049	tRNA binding
YpsIP31758_3921	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
YpsIP31758_3925	COG2964	Protein conserved in bacteria
YpsIP31758_3926	COG0545	Peptidyl-prolyl cis-trans isomerase
YpsIP31758_3928	COG1047	Peptidyl-prolyl cis-trans
YpsIP31758_3929	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
YpsIP31758_3932	COG0488	(ABC) transporter
YpsIP31758_3933	COG1216	Glycosyl transferase, family 2
YpsIP31758_3935	COG2175	clavaminate synthase activity
YpsIP31758_3936	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
YpsIP31758_3938	COG4521	taurine ABC transporter
YpsIP31758_3940	COG0429	hydrolase of the alpha beta-hydrolase fold
YpsIP31758_3942	COG3954	Phosphoribulokinase
YpsIP31758_3944	COG1765	OsmC-like protein
YpsIP31758_3946	COG1289	transmembrane transporter activity
YpsIP31758_3949	COG0433	COG0433 Predicted ATPase
YpsIP31758_3950	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
YpsIP31758_3951	COG1486	melibiose metabolic process
YpsIP31758_3955	COG0402	S-adenosylhomocysteine deaminase activity
YpsIP31758_3956	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
YpsIP31758_3957	COG2146	nitrite reductase [NAD(P)H] activity
YpsIP31758_3960	COG0180	Tryptophanyl-tRNA synthetase
YpsIP31758_3961	COG0546	phosphoglycolate phosphatase activity
YpsIP31758_3962	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
YpsIP31758_3967	COG4796	Type ii and iii secretion system protein
YpsIP31758_3972	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
YpsIP31758_3973	COG0494	nUDIX hydrolase
YpsIP31758_3975	COG1011	Hydrolase
YpsIP31758_3976	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
YpsIP31758_3980	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_3981	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YpsIP31758_3982	COG2183	response to ionizing radiation
YpsIP31758_3984	COG1918	ferrous iron import across plasma membrane
YpsIP31758_3992	COG1640	4-alpha-glucanotransferase
YpsIP31758_3993	COG0058	SHG alpha-glucan phosphorylase activity
YpsIP31758_3997	COG1349	DNA-binding transcription factor activity
YpsIP31758_4000	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
YpsIP31758_4002	COG0058	SHG alpha-glucan phosphorylase activity
YpsIP31758_4007	COG3275	phosphorelay sensor kinase activity
YpsIP31758_4013	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
YpsIP31758_4015	COG2095	MarC family integral membrane protein
YpsIP31758_4019	COG3157	Type VI secretion system effector, Hcp
YpsIP31758_4020	COG3265	gluconokinase activity
YpsIP31758_4021	COG2610	gluconate transmembrane transporter activity
YpsIP31758_4022	COG1609	Transcriptional regulator
YpsIP31758_4023	COG1741	Belongs to the pirin family
YpsIP31758_4024	COG0745	RESPONSE REGULATOR receiver
YpsIP31758_4026	COG0191	fructose-bisphosphate aldolase activity
YpsIP31758_4028	COG1879	ABC-type sugar transport system periplasmic component
YpsIP31758_4029	COG1172	Belongs to the binding-protein-dependent transport system permease family
YpsIP31758_4032	COG2081	HI0933 family
YpsIP31758_4033	COG0306	phosphate transporter
YpsIP31758_4035	COG0589	response to stress
YpsIP31758_4047	COG0339	signal peptide processing
YpsIP31758_4048	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
YpsIP31758_4049	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
YpsIP31758_4050	COG3835	regulator
YpsIP31758_4051	COG2610	gluconate transmembrane transporter activity
YpsIP31758_4052	COG1929	Belongs to the glycerate kinase type-1 family
YpsIP31758_4056	COG1295	ribonuclease BN
YpsIP31758_4057	COG2134	cdp-diacylglycerol pyrophosphatase
YpsIP31758_4058	COG2982	Protein involved in outer membrane biogenesis
YpsIP31758_4059	COG2200	EAL domain
YpsIP31758_4060	COG1942	4-Oxalocrotonate Tautomerase
YpsIP31758_4062	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
YpsIP31758_4063	COG0612	Peptidase, M16
YpsIP31758_4068	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
YpsIP31758_4069	COG2199	diguanylate cyclase activity
YpsIP31758_4069	COG2200	EAL domain
YpsIP31758_4070	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
YpsIP31758_4071	COG4608	Belongs to the ABC transporter superfamily
YpsIP31758_4072	COG0444	Belongs to the ABC transporter superfamily
YpsIP31758_4073	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
YpsIP31758_4074	COG0601	transmembrane transport
YpsIP31758_4075	COG0747	negative chemotaxis
YpsIP31758_4076	COG2831	hemolysin activation secretion protein
YpsIP31758_4077	COG3210	domain, Protein
YpsIP31758_4078	COG2271	Major facilitator Superfamily
YpsIP31758_4079	COG3851	Histidine kinase
YpsIP31758_4080	COG2197	response regulator
YpsIP31758_4081	COG2194	sulfuric ester hydrolase activity
YpsIP31758_4088	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
YpsIP31758_4091	COG4607	ABC-type enterochelin transport system periplasmic component
YpsIP31758_4093	COG4605	iron ion homeostasis
YpsIP31758_4095	COG4604	ABC transporter, ATP-binding protein
YpsIP31758_4097	COG0582	viral genome integration into host DNA
YpsIP31758_4098	COG1609	Transcriptional regulator
YpsIP31758_4098	COG2207	Transcriptional regulator
YpsIP31758_4099	COG4214	carbohydrate transport
YpsIP31758_4101	COG4213	ABC transporter substrate-binding protein
YpsIP31758_4103	COG1070	Carbohydrate kinase
YpsIP31758_4105	COG3121	Chaperone
YpsIP31758_4106	COG3188	usher protein
YpsIP31758_4107	COG3539	Fimbrial protein
YpsIP31758_4108	COG3274	enterobacterial common antigen metabolic process
YpsIP31758_4114	COG3276	selenocysteine insertion sequence binding
YpsIP31758_4117	COG2864	formate dehydrogenase
YpsIP31758_4118	COG0437	4 iron, 4 sulfur cluster binding
YpsIP31758_4121	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
YpsIP31758_4126	COG3722	fumarate hydratase activity
YpsIP31758_4128	COG2213	PTS system mannitol-specific
YpsIP31758_4128	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
YpsIP31758_4132	COG2818	Glycosylase
YpsIP31758_4135	COG2885	chlorophyll binding
YpsIP31758_4138	COG0366	Alpha amylase catalytic
YpsIP31758_4140	COG3977	Valine--pyruvate aminotransferase
YpsIP31758_4144	COG5645	(Lipo)protein
YpsIP31758_4146	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
YpsIP31758_4147	COG2423	ornithine cyclodeaminase activity
YpsIP31758_4149	COG0561	phosphatase activity
YpsIP31758_4150	COG0187	DNA topoisomerase II activity
YpsIP31758_4152	COG0592	DNA-directed DNA polymerase activity
YpsIP31758_4154	COG0230	Belongs to the bacterial ribosomal protein bL34 family
YpsIP31758_4157	COG0706	membrane insertase activity
YpsIP31758_4161	COG2252	PERMEase
YpsIP31758_4162	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
YpsIP31758_4163	COG0765	amino acid transport
YpsIP31758_4164	COG0765	amino acid transport
YpsIP31758_4165	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
YpsIP31758_4167	COG0704	Plays a role in the regulation of phosphate uptake
YpsIP31758_4169	COG0581	inorganic phosphate transmembrane transporter activity
YpsIP31758_4170	COG0573	inorganic phosphate transmembrane transporter activity
YpsIP31758_4171	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
YpsIP31758_4173	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
YpsIP31758_4183	COG3312	ion transport
YpsIP31758_A0023	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
YpsIP31758_A0047	COG4962	Type ii secretion system protein e
YpsIP31758_A0049	COG5268	conjugation
YpsIP31758_A0050	COG3451	type IV secretory pathway VirB4
YpsIP31758_A0052	COG3504	Conjugal transfer protein
YpsIP31758_A0058	COG0250	Participates in transcription elongation, termination and antitermination
YpsIP31758_A0063	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
YpsIP31758_B0017	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
YpsIP31758_B0020	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
YpsIP31758_B0031	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
YpsIP31758_B0048	COG2963	transposase activity
YpsIP31758_B0062	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
YpsIP31758_B0064	COG1262	PFAM Formylglycine-generating sulfatase enzyme
YpsIP31758_B0064	COG0515	serine threonine protein kinase
YpsIP31758_B0073	COG2336	PFAM SpoVT AbrB
YpsIP31758_B0092	COG4974	Belongs to the 'phage' integrase family
YpsIP31758_B0122	COG1674	ftsk spoiiie