locus_tag old_locus_tag gene Name start end strand product note type ID NCBI YpsIP31758_0001 YpsIP31758_0001 mioC mioC 21 461 - MioC protein identified by similarity to SP:P03817%3B match to protein family HMM PF00258 gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0001 YpsIP31758_0002 YpsIP31758_0002 YpsIP31758_0002 554 1015 - transcriptional regulator%2C AsnC family identified by match to protein family HMM PF01037 gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0002 YpsIP31758_0003 YpsIP31758_0003 asnA asnA 1185 2177 + aspartate--ammonia ligase identified by match to protein family HMM PF03590%3B match to protein family HMM TIGR00669 gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0003 YpsIP31758_0004 YpsIP31758_0004 YpsIP31758_0004 2276 3742 - protein viaA identified by similarity to SP:P0ADN1 gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0004 YpsIP31758_0005 YpsIP31758_0005 YpsIP31758_0005 3746 5284 - putative ATPase RavA identified by similarity to SP:P31473%3B match to protein family HMM PF07728 gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0005 YpsIP31758_0006 YpsIP31758_0006 kup kup 5558 7426 + potassium uptake protein trkD%3B identified by match to protein family HMM PF02705%3B match to protein family HMM TIGR00794 gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0006 YpsIP31758_0007 YpsIP31758_0007 rbsD rbsD 7631 8050 + cytoplasmic D-ribose-binding protein RbsD identified by similarity to SP:P04982%3B match to protein family HMM PF05025 gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0007 YpsIP31758_0008 YpsIP31758_0008 rbsK rbsK 8101 9027 + ribokinase identified by match to protein family HMM PF00294%3B match to protein family HMM TIGR02152 gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0008 YpsIP31758_0009 YpsIP31758_0009 YpsIP31758_0009 9247 10671 - transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0009 YpsIP31758_0010 YpsIP31758_0010 YpsIP31758_0010 9047 9250 + conserved domain protein gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0010 YpsIP31758_0011 YpsIP31758_0011 YpsIP31758_0011 10751 11440 - transcriptional regulator%2C GntR family identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0011 YpsIP31758_0015 YpsIP31758_0015 YpsIP31758_0015 17641 18849 + IS285%2C transposase identified by match to protein family HMM PF00872 gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0015 YpsIP31758_0016 YpsIP31758_0016 mobB mobB 18907 19440 - molybdopterin-guanine dinucleotide biosynthesis protein B identified by similarity to SP:P32125%3B match to protein family HMM PF03205%3B match to protein family HMM TIGR00176 gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0016 YpsIP31758_0017 YpsIP31758_0017 mobA mobA 19437 20024 - molybdopterin-guanine dinucleotide biosynthesis protein A identified by similarity to SP:P32173%3B match to protein family HMM TIGR02665 gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0017 YpsIP31758_0018 YpsIP31758_0018 YpsIP31758_0018 20178 20447 + conserved hypothetical protein identified by similarity to GB:AAD47615.1%3B match to protein family HMM PF06288 gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0018 YpsIP31758_0019 YpsIP31758_0019 YpsIP31758_0019 20538 21524 + putative RdoA protein identified by similarity to SP:P0C0K3%3B similarity to SP:Q8X8H9%3B match to protein family HMM PF01636 gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0019 YpsIP31758_0020 YpsIP31758_0020 dsbA dsbA 21552 22175 + thiol:disulfide interchange protein DsbA identified by similarity to SP:P52234%3B match to protein family HMM PF01323 gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0020 YpsIP31758_0021 YpsIP31758_0021 polA polA 22666 25464 + DNA polymerase I identified by similarity to SP:P00582%3B match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF01612%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593 gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0021 YpsIP31758_0022 YpsIP31758_0022 YpsIP31758_0022 25872 26522 - putative GTP-binding protein EngB identified by similarity to SP:P0A6P7%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR00650 gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0022 YpsIP31758_0023 YpsIP31758_0023 YpsIP31758_0023 27266 27832 + conserved hypothetical protein identified by match to protein family HMM PF04220 gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0023 YpsIP31758_0024 YpsIP31758_0024 hemN hemN 28015 29388 + oxygen-independent coproporphyrinogen III oxidase identified by similarity to SP:P32131%3B match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00538 gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0024 YpsIP31758_0025 YpsIP31758_0025 ntrC ntrC 29442 30854 - nitrogen regulation protein NR(I) identified by similarity to SP:P03029%3B match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01818 gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0025 YpsIP31758_0026 YpsIP31758_0026 ntrB ntrB 30862 31911 - nitrogen regulation protein NR(II) identified by similarity to SP:P06712%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0026 YpsIP31758_0027 YpsIP31758_0027 glnA glnA 32164 33573 - glutamine synthetase%2C type I identified by match to protein family HMM PF00120%3B match to protein family HMM PF03951%3B match to protein family HMM TIGR00653 gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0027 YpsIP31758_0028 YpsIP31758_0028 typA typA 34135 35958 + GTP-binding protein TypA/BipA identified by similarity to SP:P32132%3B match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01394 gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0028 YpsIP31758_0029 YpsIP31758_0029 YpsIP31758_0029 36281 36871 + HAD hydrolase%2C IA family identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0029 YpsIP31758_0030 YpsIP31758_0030 rbn rbn 36968 37852 + tRNA-processing ribonuclease BN identified by similarity to SP:P0A8K8%3B match to protein family HMM PF03631%3B match to protein family HMM TIGR00765 gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0030 YpsIP31758_0031 YpsIP31758_0031 dtd dtd 37859 38296 + D-tyrosyl-tRNA(Tyr) deacylase identified by match to protein family HMM PF02580%3B match to protein family HMM TIGR00256 gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0031 YpsIP31758_0032 YpsIP31758_0032 YpsIP31758_0032 38482 39405 + acetyltransferase%2C GNAT family /thioesterase domain identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR02447 gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0032 YpsIP31758_0033 YpsIP31758_0033 YpsIP31758_0033 39540 41249 - asmA family protein identified by match to protein family HMM PF05170 gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0033 YpsIP31758_0034 YpsIP31758_0034 yicE yicE 41396 42781 - xanthine permease identified by similarity to GB:AAN82915.1%3B match to protein family HMM PF00860%3B match to protein family HMM TIGR00801%3B match to protein family HMM TIGR03173 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0034 YpsIP31758_0035 YpsIP31758_0035 YpsIP31758_0035 42780 42899 + hypothetical protein identified by glimmer%3B putative gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0035 YpsIP31758_0036 YpsIP31758_0036 gltS gltS 43019 44233 + sodium/glutamate symporter identified by similarity to SP:P19933%3B match to protein family HMM PF03616%3B match to protein family HMM TIGR00210 gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0036 YpsIP31758_0037 YpsIP31758_0037 recG recG 44599 46680 - ATP-dependent DNA helicase RecG identified by similarity to SP:P24230%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00643 gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0037 YpsIP31758_0038 YpsIP31758_0038 trmH trmH 46681 47373 - tRNA guanosine-2'-O-methyltransferase identified by similarity to SP:P19396%3B match to protein family HMM PF00588 gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0038 YpsIP31758_0039 YpsIP31758_0039 spoT spoT 47379 49487 - guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase identified by similarity to SP:P17580%3B match to protein family HMM PF01966%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0039 YpsIP31758_0040 YpsIP31758_0040 rpoZ rpoZ 49507 49782 - DNA-directed RNA polymerase%2C omega subunit identified by match to protein family HMM PF01192%3B match to protein family HMM TIGR00690 gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0040 YpsIP31758_0041 YpsIP31758_0041 gmk gmk 49837 50460 - guanylate kinase identified by similarity to SP:P60546%3B match to protein family HMM PF00625 gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0041 YpsIP31758_0042 YpsIP31758_0042 ligA2 ligA2 50861 52564 + DNA ligase%2C NAD-dependent identified by match to protein family HMM PF01653%3B match to protein family HMM PF03120 gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0042 YpsIP31758_0043 YpsIP31758_0043 YpsIP31758_0043 52584 53201 - putative membrane protein identified by match to protein family HMM PF03458 gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0043 YpsIP31758_0044 YpsIP31758_0044 YpsIP31758_0044 53942 54313 + conserved hypothetical protein identified by similarity to GB:ABB68207.1 gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0044 YpsIP31758_0045 YpsIP31758_0045 YpsIP31758_0045 54330 54542 - hypothetical protein identified by glimmer%3B putative gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0045 YpsIP31758_0046 YpsIP31758_0046 YpsIP31758_0046 54572 55174 - putative phage terminase%2C small subunit identified by similarity to SP:P10590%3B match to protein family HMM PF03592 gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0046 YpsIP31758_0047 YpsIP31758_0047 YpsIP31758_0047 55921 56997 - conserved domain protein identified by similarity to SP:P46855 gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0047 YpsIP31758_0048 YpsIP31758_0048 YpsIP31758_0048 57544 57666 - hypothetical protein identified by glimmer%3B putative gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0048 YpsIP31758_0049 YpsIP31758_0049 YpsIP31758_0049 57623 58774 - conserved domain protein identified by similarity to RF:NP_246721.1 gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0049 YpsIP31758_0050 YpsIP31758_0050 YpsIP31758_0050 58771 59781 - hypothetical protein identified by glimmer%3B putative gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0050 YpsIP31758_0051 YpsIP31758_0051 YpsIP31758_0051 59796 60215 - hypothetical protein identified by glimmer%3B putative gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0051 YpsIP31758_0052 YpsIP31758_0052 YpsIP31758_0052 60215 60433 - AlpA family protein identified by match to protein family HMM PF05930 gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0052 YpsIP31758_0053 YpsIP31758_0053 YpsIP31758_0053 60547 61440 - hypothetical protein identified by glimmer%3B putative gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0053 YpsIP31758_0054 YpsIP31758_0054 YpsIP31758_0054 61537 62805 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0054 YpsIP31758_0055 YpsIP31758_0055 YpsIP31758_0055 62995 63858 - conserved hypothetical protein TIGR00255 identified by similarity to SP:P23839%3B match to protein family HMM PF03755%3B match to protein family HMM TIGR00255 gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0055 YpsIP31758_0056 YpsIP31758_0056 rph rph 63985 64701 + ribonuclease PH identified by similarity to SP:P03842%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM TIGR01966 gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0056 YpsIP31758_0057 YpsIP31758_0057 pyrE pyrE 64868 65515 + orotate phosphoribosyltransferase identified by similarity to SP:P0A7E3%3B match to protein family HMM PF00156%3B match to protein family HMM TIGR00336 gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0057 YpsIP31758_0058 YpsIP31758_0058 YpsIP31758_0058 65650 66246 - transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0058 YpsIP31758_0059 YpsIP31758_0059 dut dut 66368 66823 - deoxyuridine 5'-triphosphate nucleotidohydrolase identified by similarity to SP:P06968%3B match to protein family HMM PF00692%3B match to protein family HMM TIGR00576 gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0059 YpsIP31758_0060 YpsIP31758_0060 coaBC coaBC 66804 68018 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase identified by match to protein family HMM PF02441%3B match to protein family HMM PF04127%3B match to protein family HMM TIGR00521 gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0060 YpsIP31758_0061 YpsIP31758_0061 radC radC 68215 68883 + DNA repair protein RadC identified by similarity to SP:P25531%3B match to protein family HMM PF04002%3B match to protein family HMM TIGR00608 gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0061 YpsIP31758_0062 YpsIP31758_0062 rpmB rpmB 69146 69382 + ribosomal protein L28 identified by match to protein family HMM PF00830%3B match to protein family HMM TIGR00009 gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0062 YpsIP31758_0063 YpsIP31758_0063 rpmG rpmG 69394 69561 + ribosomal protein L33 identified by match to protein family HMM PF00471%3B match to protein family HMM TIGR01023 gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0063 YpsIP31758_0064 YpsIP31758_0064 mutM mutM 69644 70453 + formamidopyrimidine-DNA glycosylase identified by match to protein family HMM PF01149%3B match to protein family HMM PF06827%3B match to protein family HMM PF06831%3B match to protein family HMM TIGR00577 gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0064 YpsIP31758_0065 YpsIP31758_0065 coaD coaD 70459 70938 - pantetheine-phosphate adenylyltransferase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01510 gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0065 YpsIP31758_0066 YpsIP31758_0066 YpsIP31758_0066 70935 71717 - glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0066 YpsIP31758_0067 YpsIP31758_0067 kdtA kdtA 71718 72995 - 3-deoxy-D-manno-octulosonic-acid transferase identified by similarity to SP:P0AC75%3B match to protein family HMM PF00534%3B match to protein family HMM PF04413 gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0067 YpsIP31758_0068 YpsIP31758_0068 rfaC rfaC 73415 74380 - lipopolysaccharide heptosyltransferase I identified by match to protein family HMM PF01075%3B match to protein family HMM TIGR02193 gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0068 YpsIP31758_0069 YpsIP31758_0069 rfaF rfaF 74380 75444 - lipopolysaccharide heptosyltransferase II identified by match to protein family HMM PF01075%3B match to protein family HMM TIGR02195 gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0069 YpsIP31758_0070 YpsIP31758_0070 rfaD rfaD 75475 76407 - ADP-L-glycero-D-manno-heptose-6-epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR02197 gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0070 YpsIP31758_0071 YpsIP31758_0071 kbl kbl 76653 77864 + 2-amino-3-ketobutyrate coenzyme A ligase identified by match to protein family HMM PF00155%3B match to protein family HMM PF00202%3B match to protein family HMM PF00464%3B match to protein family HMM TIGR01822 gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0071 YpsIP31758_0072 YpsIP31758_0072 tdh tdh 77874 78899 + L-threonine 3-dehydrogenase identified by similarity to SP:P07913%3B match to protein family HMM PF00107%3B match to protein family HMM TIGR00692 gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0072 YpsIP31758_0073 YpsIP31758_0073 YpsIP31758_0073 79037 80047 - Divergent polysaccharide deacetylase identified by similarity to SP:P37691%3B match to protein family HMM PF04748 gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0073 YpsIP31758_0074 YpsIP31758_0074 YpsIP31758_0074 80071 81441 - peptidase%2C M23 family domain protein identified by match to protein family HMM PF01551 gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0074 YpsIP31758_0075 YpsIP31758_0075 gpmI gpmI 81451 82998 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase identified by similarity to SP:P37689%3B match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307 gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0075 YpsIP31758_0076 YpsIP31758_0076 YpsIP31758_0076 83395 83829 + rhodanese domain protein identified by match to protein family HMM PF00581 gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0076 YpsIP31758_0077 YpsIP31758_0077 grxC grxC 83948 84196 + glutaredoxin 3 identified by match to protein family HMM PF00462%3B match to protein family HMM PF05768%3B match to protein family HMM TIGR02181 gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0077 YpsIP31758_0078 YpsIP31758_0078 secB secB 84284 84760 + protein-export chaperone SecB identified by match to protein family HMM PF02556%3B match to protein family HMM TIGR00809 gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0078 YpsIP31758_0079 YpsIP31758_0079 gpsA gpsA 84760 85779 + glycerol-3-phosphate dehydrogenase (NAD(P)+) identified by match to protein family HMM PF01210%3B match to protein family HMM PF02558%3B match to protein family HMM PF07479 gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0079 YpsIP31758_0080 YpsIP31758_0080 cysE cysE 86045 86866 + serine O-acetyltransferase identified by similarity to SP:P0A9D4%3B match to protein family HMM PF06426%3B match to protein family HMM TIGR01172 gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0080 YpsIP31758_0081 YpsIP31758_0081 YpsIP31758_0081 86989 87477 - RNA methyltransferase%2C TrmH family%2C group 2 identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00185 gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0081 YpsIP31758_0082 YpsIP31758_0082 ada ada 87666 88730 + ada regulatory protein identified by match to protein family HMM PF00165%3B match to protein family HMM PF01035%3B match to protein family HMM PF02805%3B match to protein family HMM PF02870%3B match to protein family HMM TIGR00589 gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0082 YpsIP31758_0083 YpsIP31758_0083 cpxA cpxA 88798 90174 - sensor protein CpxA identified by similarity to SP:P0AE82%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0083 YpsIP31758_0084 YpsIP31758_0084 cpxR2 cpxR2 90171 90869 - transcriptional regulatory protein CpxR identified by similarity to SP:P0AE88%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0084 YpsIP31758_0085 YpsIP31758_0085 YpsIP31758_0085 91043 91531 + conserved hypothetical protein identified by match to protein family HMM PF07813 gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0085 YpsIP31758_0086 YpsIP31758_0086 YpsIP31758_0086 92209 93168 + putative transposase identified by match to protein family HMM PF04754%3B match to protein family HMM TIGR01784 gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0086 YpsIP31758_0087 YpsIP31758_0087 YpsIP31758_0087 93236 93608 - transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0087 YpsIP31758_0088 YpsIP31758_0088 fieF fieF 93730 94632 + cation-efflux pump FieF identified by similarity to SP:P69380%3B match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0088 YpsIP31758_0089 YpsIP31758_0089 pfkA pfkA 94850 95833 + 6-phosphofructokinase identified by match to protein family HMM PF00365%3B match to protein family HMM TIGR02482 gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0089 YpsIP31758_0090 YpsIP31758_0090 YpsIP31758_0090 96054 97043 + sulfate ABC transporter%2C sulfate-binding protein identified by similarity to SP:P06997%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR00971 gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0090 YpsIP31758_0091 YpsIP31758_0091 YpsIP31758_0091 97293 98069 - conserved hypothetical protein gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0091 YpsIP31758_0092 YpsIP31758_0092 YpsIP31758_0092 98187 99614 - transporter%2C divalent anion:Na+ symporter (DASS) family identified by match to protein family HMM PF00939%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00785 gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0092 YpsIP31758_0093 YpsIP31758_0093 ligK ligK 99680 100393 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase identified by match to protein family HMM PF03737%3B match to protein family HMM TIGR02798 gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0093 YpsIP31758_0094 YpsIP31758_0094 YpsIP31758_0094 100390 101127 - GlcNAc-PI de-N-acetylase family identified by match to protein family HMM PF02585 gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0094 YpsIP31758_0095 YpsIP31758_0095 YpsIP31758_0095 101264 102499 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0095 YpsIP31758_0096 YpsIP31758_0096 tpiA tpiA 102729 103496 - triosephosphate isomerase identified by match to protein family HMM PF00121%3B match to protein family HMM TIGR00419 gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0096 YpsIP31758_0097 YpsIP31758_0097 YpsIP31758_0097 103625 104239 - conserved hypothetical protein identified by similarity to SP:P32160%3B match to protein family HMM PF07305 gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0097 YpsIP31758_0098 YpsIP31758_0098 YpsIP31758_0098 104381 104842 + conserved hypothetical protein identified by similarity to GB:AAS60370.1%3B match to protein family HMM PF05656 gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0098 YpsIP31758_0099 YpsIP31758_0099 fpr fpr 105238 105984 - ferredoxin--NADP reductase identified by similarity to SP:P28861%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0099 YpsIP31758_0100 YpsIP31758_0100 glpX glpX 106139 107149 - fructose-1%2C6-bisphosphatase%2C class II identified by match to protein family HMM PF03320%3B match to protein family HMM TIGR00330 gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0100 YpsIP31758_0101 YpsIP31758_0101 glpK glpK 107418 108941 - glycerol kinase identified by similarity to SP:P44400%3B match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01311 gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0101 YpsIP31758_0102 YpsIP31758_0102 glpF glpF 109118 109966 - glycerol uptake facilitator protein identified by similarity to SP:P11244%3B match to protein family HMM PF00230%3B match to protein family HMM TIGR00861 gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0102 YpsIP31758_0103 YpsIP31758_0103 YpsIP31758_0103 110674 110913 + conserved hypothetical protein identified by match to protein family HMM PF06005 gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0103 YpsIP31758_0104 YpsIP31758_0104 YpsIP31758_0104 111088 111228 + hypothetical protein identified by glimmer%3B putative gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0104 YpsIP31758_0105 YpsIP31758_0105 YpsIP31758_0105 111233 113347 - bacteriocin ABC transporter%2C ATP-binding/permease protein identified by similarity to GB:AAL08400.1%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM PF03412 gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0105 YpsIP31758_0106 YpsIP31758_0106 YpsIP31758_0106 113340 114632 - auxiliary transport protein%2C membrane fusion protein (MFP) family identified by match to protein family HMM PF00529 gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0106 YpsIP31758_0107 YpsIP31758_0107 YpsIP31758_0107 114845 115084 + conserved hypothetical protein gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0107 YpsIP31758_0108 YpsIP31758_0108 YpsIP31758_0108 115259 115408 + hypothetical protein identified by glimmer%3B putative gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0108 YpsIP31758_0109 YpsIP31758_0109 YpsIP31758_0109 115714 116298 + conserved hypothetical protein identified by similarity to GB:AAS60383.1 gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0109 YpsIP31758_0110 YpsIP31758_0110 rraA rraA 116415 116900 - regulator of ribonuclease activity A identified by match to protein family HMM PF03737%3B match to protein family HMM TIGR01935%3B match to protein family HMM TIGR02998 gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0110 YpsIP31758_0111 YpsIP31758_0111 menA menA 117042 117959 - 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR00751 gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0111 YpsIP31758_0112 YpsIP31758_0112 hslU hslU 118177 119508 - heat shock protein HslVU%2C ATPase subunit HslU identified by match to protein family HMM PF07724%3B match to protein family HMM TIGR00390 gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0112 YpsIP31758_0113 YpsIP31758_0113 hslV hslV 119579 120103 - ATP-dependent protease HslV identified by similarity to PDB:1NED_A%3B match to protein family HMM PF00227 gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0113 YpsIP31758_0114 YpsIP31758_0114 ftsN ftsN 120203 121048 - cell division protein FtsN identified by similarity to SP:P29131%3B match to protein family HMM PF05036%3B match to protein family HMM TIGR02223 gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0114 YpsIP31758_0115 YpsIP31758_0115 cytR cytR 121114 122142 - transcriptional repressor CytR identified by similarity to SP:P0ACN7%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0115 YpsIP31758_0116 YpsIP31758_0116 priA priA 122495 124693 - primosomal protein n' identified by similarity to SP:P17888%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00595 gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0116 YpsIP31758_0117 YpsIP31758_0117 YpsIP31758_0117 124672 124821 + hypothetical protein identified by glimmer%3B putative gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0117 YpsIP31758_0118 YpsIP31758_0118 rpmE rpmE 124946 125161 + ribosomal protein L31 identified by match to protein family HMM PF01197%3B match to protein family HMM TIGR00105 gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0118 YpsIP31758_0119 YpsIP31758_0119 YpsIP31758_0119 125685 126140 - yiaA/B two helix domain protein identified by match to protein family HMM PF05360 gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0119 YpsIP31758_0120 YpsIP31758_0120 metJ metJ 126489 126806 - Met repressor identified by similarity to SP:P0A8U6%3B match to protein family HMM PF01340 gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0120 YpsIP31758_0121 YpsIP31758_0121 metB metB 127184 128344 + cystathionine gamma-synthase identified by similarity to SP:P00935%3B match to protein family HMM PF01053%3B match to protein family HMM TIGR02080 gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0121 YpsIP31758_0122 YpsIP31758_0122 metL metL 128347 130782 + bifunctional aspartokinase/homoserine dehydrogenase II identified by similarity to SP:P00562%3B match to protein family HMM PF00696%3B match to protein family HMM PF00742%3B match to protein family HMM PF03447%3B match to protein family HMM TIGR00657 gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0122 YpsIP31758_0123 YpsIP31758_0123 metF metF 131015 131899 + 5%2C10-methylenetetrahydrofolate reductase identified by similarity to SP:P00394%3B match to protein family HMM PF02219%3B match to protein family HMM TIGR00676 gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0123 YpsIP31758_0124 YpsIP31758_0124 YpsIP31758_0124 131933 132115 + putative transposase%2C truncation gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0124 YpsIP31758_0125 YpsIP31758_0125 ppc ppc 132720 135356 - phosphoenolpyruvate carboxylase identified by similarity to SP:P00864%3B match to protein family HMM PF00311 gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0125 YpsIP31758_0126 YpsIP31758_0126 argE argE 135730 136899 - acetylornithine deacetylase (ArgE) identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01892 gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0126 YpsIP31758_0127 YpsIP31758_0127 argC argC 137144 138148 + N-acetyl-gamma-glutamyl-phosphate reductase identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01850 gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0127 YpsIP31758_0128 YpsIP31758_0128 argB argB 138314 139090 + acetylglutamate kinase identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00761 gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0128 YpsIP31758_0129 YpsIP31758_0129 argH argH 139257 140630 + argininosuccinate lyase identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00838 gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0129 YpsIP31758_0130 YpsIP31758_0130 hasR hasR 141229 143721 + TonB-dependent heme receptor HasR identified by similarity to GB:CAE46936.1%3B match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01785%3B match to protein family HMM TIGR01786 gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0130 YpsIP31758_0131 YpsIP31758_0131 hasA hasA 143943 144560 + hemophore HasA identified by similarity to SP:Q54450%3B match to protein family HMM PF06438 gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0131 YpsIP31758_0132 YpsIP31758_0132 hasD hasD 144726 146534 + type I secretion ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01842 gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0132 YpsIP31758_0133 YpsIP31758_0133 hasE hasE 146610 147938 + HlyD family hemolysin secretion protein identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01843 gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0133 YpsIP31758_0134 YpsIP31758_0134 YpsIP31758_0134 148003 148806 + tonB domain protein identified by match to protein family HMM TIGR01352 gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0134 YpsIP31758_0135 YpsIP31758_0135 YpsIP31758_0135 148913 150376 - pyridine nucleotide-disulfide oxidoreductase family protein identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0135 YpsIP31758_0136 YpsIP31758_0136 YpsIP31758_0136 150470 151201 - hybrid peroxiredoxin hyPrx5 identified by similarity to SP:P44758%3B match to protein family HMM PF00462%3B match to protein family HMM PF00578%3B match to protein family HMM TIGR02190 gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0136 YpsIP31758_0137 YpsIP31758_0137 sthA sthA 152248 153648 - soluble pyridine nucleotide transhydrogenase identified by similarity to SP:P27306%3B match to protein family HMM PF00070%3B match to protein family HMM PF01266%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0137 YpsIP31758_0138 YpsIP31758_0138 oxyR oxyR 151348 152265 + hydrogen peroxide-inducible genes activator identified by similarity to SP:P0ACQ4%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0138 YpsIP31758_0139 YpsIP31758_0139 YpsIP31758_0139 153866 154501 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0139 YpsIP31758_0140 YpsIP31758_0140 YpsIP31758_0140 154514 154921 + conserved hypothetical protein identified by similarity to GB:CAH19363.1%3B match to protein family HMM PF07226 gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0140 YpsIP31758_0141 YpsIP31758_0141 trmA trmA 155055 156158 - tRNA (uracil-5-)-methyltransferase identified by match to protein family HMM PF05958%3B match to protein family HMM TIGR02143 gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0141 YpsIP31758_0142 YpsIP31758_0142 btuB btuB 156638 158512 + TonB-dependent vitamin B12 receptor identified by similarity to SP:P06129%3B match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01779 gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0142 YpsIP31758_0143 YpsIP31758_0143 murI murI 158457 159320 + glutamate racemase identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00067 gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0143 YpsIP31758_0147 YpsIP31758_0147 YpsIP31758_0147 166195 167151 + putative sugar ABC transporter%2C periplasmic sugar-binding protein identified by match to protein family HMM PF00532 gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0147 YpsIP31758_0148 YpsIP31758_0148 YpsIP31758_0148 167237 168727 + putative sugar ABC transporter%2C periplasmic sugar-binding protein identified by match to protein family HMM PF00005 gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0148 YpsIP31758_0149 YpsIP31758_0149 YpsIP31758_0149 168760 169758 + putative sugar ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0149 YpsIP31758_0150 YpsIP31758_0150 YpsIP31758_0150 170737 171618 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0150 YpsIP31758_0151 YpsIP31758_0151 YpsIP31758_0151 169758 170750 + putative sugar ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0151 YpsIP31758_0152 YpsIP31758_0152 YpsIP31758_0152 171737 172075 + conserved hypothetical protein identified by similarity to GB:AAZ90461.1%3B match to protein family HMM PF04219 gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0152 YpsIP31758_0153 YpsIP31758_0153 YpsIP31758_0153 172332 173855 - Mg chelatase-like protein identified by match to protein family HMM PF01078%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00368 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0153 YpsIP31758_0154 YpsIP31758_0154 ilvB3 ilvB3 174479 176125 + acetolactate synthase%2C large subunit%2C biosynthetic type identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118 gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0154 YpsIP31758_0155 YpsIP31758_0155 ilvM ilvM 176122 176379 + acetolactate synthase isozyme II small subunit identified by similarity to SP:P0ADG1 gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0155 YpsIP31758_0156 YpsIP31758_0156 ilvE ilvE 176402 177328 + branched-chain amino acid aminotransferase identified by match to protein family HMM PF01063%3B match to protein family HMM TIGR01122 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0156 YpsIP31758_0157 YpsIP31758_0157 ilvD ilvD 177533 179383 + dihydroxy-acid dehydratase identified by match to protein family HMM PF00920%3B match to protein family HMM TIGR00110 gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0157 YpsIP31758_0158 YpsIP31758_0158 ilvA ilvA 179389 180933 + threonine ammonia-lyase%2C biosynthetic identified by match to protein family HMM PF00291%3B match to protein family HMM PF00585%3B match to protein family HMM TIGR01124 gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0158 YpsIP31758_0159 YpsIP31758_0159 YpsIP31758_0159 181064 181525 - putative enterobacterial membrane protein identified by match to protein family HMM PF06092 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0159 YpsIP31758_0160 YpsIP31758_0160 YpsIP31758_0160 181605 182069 - putative enterobacterial membrane protein identified by match to protein family HMM PF06092 gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0160 YpsIP31758_0161 YpsIP31758_0161 YpsIP31758_0161 182053 182931 - conserved hypothetical protein identified by similarity to GB:AAS63325.1%3B match to protein family HMM TIGR03034 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0161 YpsIP31758_0162 YpsIP31758_0162 ilvY ilvY 183268 184149 - transcriptional regulator IlvY identified by similarity to SP:P05827%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0162 YpsIP31758_0163 YpsIP31758_0163 ilvC ilvC 184435 185913 + ketol-acid reductoisomerase identified by match to protein family HMM PF01450%3B match to protein family HMM PF07991%3B match to protein family HMM TIGR00465 gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0163 YpsIP31758_0164 YpsIP31758_0164 YpsIP31758_0164 186093 187898 + colicin/pyocin immunity family protein identified by similarity to SP:Q06583%3B match to protein family HMM PF01844%3B match to protein family HMM PF06958 gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0164 YpsIP31758_0165 YpsIP31758_0165 YpsIP31758_0165 187900 188154 + colicin/pyocin immunity family protein identified by similarity to SP:P04482%3B match to protein family HMM PF01320 gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0165 YpsIP31758_0166 YpsIP31758_0166 YpsIP31758_0166 188607 188765 - hypothetical protein identified by glimmer%3B putative gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0166 YpsIP31758_0167 YpsIP31758_0167 YpsIP31758_0167 188789 189523 - gram-negative pili assembly chaperone identified by match to protein family HMM PF00345 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0167 YpsIP31758_0168 YpsIP31758_0168 YpsIP31758_0168 189573 190850 - conserved hypothetical protein identified by similarity to GB:CAH19397.1 gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0168 YpsIP31758_0169 YpsIP31758_0169 YpsIP31758_0169 190957 193608 - fimbrial usher protein identified by match to protein family HMM PF00577 gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0169 YpsIP31758_0170 YpsIP31758_0170 YpsIP31758_0170 193636 194367 - gram-negative pili assembly chaperone identified by match to protein family HMM PF00345 gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0170 YpsIP31758_0171 YpsIP31758_0171 YpsIP31758_0171 194431 194961 - fimbrial protein identified by match to protein family HMM PF00419 gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0171 YpsIP31758_0172 YpsIP31758_0172 YpsIP31758_0172 195753 196544 - glutamine cyclotransferase identified by similarity to GB:AAC27745.1%3B match to protein family HMM PF05096 gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0172 YpsIP31758_0173 YpsIP31758_0173 ppiC ppiC 196783 197064 - peptidyl-prolyl cis-trans isomerase C identified by similarity to SP:P0A9L5%3B match to protein family HMM PF00639 gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0173 YpsIP31758_0174 YpsIP31758_0174 YpsIP31758_0174 197084 197230 - hypothetical protein identified by glimmer%3B putative gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0174 YpsIP31758_0175 YpsIP31758_0175 rep rep 197268 199289 + ATP-dependent DNA helicase Rep identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR01074 gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0175 YpsIP31758_0176 YpsIP31758_0176 YpsIP31758_0176 199290 199454 - hypothetical protein identified by glimmer%3B putative gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0176 YpsIP31758_0177 YpsIP31758_0177 gppA gppA 199457 200953 - guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase identified by similarity to SP:P25552%3B match to protein family HMM PF02541 gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0177 YpsIP31758_0178 YpsIP31758_0178 rhlB rhlB 200957 202243 - ATP-dependent RNA helicase RhlB identified by similarity to SP:P0A8J8%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0178 YpsIP31758_0179 YpsIP31758_0179 trx trx 202362 202688 + thioredoxin identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0179 YpsIP31758_0180 YpsIP31758_0180 rho rho 203168 204427 + transcription termination factor Rho identified by match to protein family HMM PF00006%3B match to protein family HMM PF07497%3B match to protein family HMM PF07498%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00767 gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0180 YpsIP31758_0181 YpsIP31758_0181 YpsIP31758_0181 204700 205209 + IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0181 YpsIP31758_0182 YpsIP31758_0182 wecA wecA 205688 206770 + undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR02380 gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0182 YpsIP31758_0183 YpsIP31758_0183 YpsIP31758_0183 206788 207867 + chain length determinant family protein identified by match to protein family HMM PF02706 gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0183 YpsIP31758_0184 YpsIP31758_0184 YpsIP31758_0184 208148 209278 + UDP-N-acetylglucosamine 2-epimerase identified by match to protein family HMM PF02350%3B match to protein family HMM TIGR00236 gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0184 YpsIP31758_0185 YpsIP31758_0185 YpsIP31758_0185 209275 210537 + UDP-glucose/GDP-mannose dehydrogenase family protein identified by match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0185 YpsIP31758_0186 YpsIP31758_0186 rfbB rfbB 210534 211601 + dTDP-glucose 4%2C6-dehydratase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01181 gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0186 YpsIP31758_0187 YpsIP31758_0187 rfbA rfbA 211896 212777 + glucose-1-phosphate thymidylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01207 gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0187 YpsIP31758_0188 YpsIP31758_0188 wecD wecD 212755 213492 + TDP-D-fucosamine acetyltransferase identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR02382 gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0188 YpsIP31758_0189 YpsIP31758_0189 YpsIP31758_0189 213494 214624 + TDP-4-keto-6-deoxy-D-glucose transaminase identified by match to protein family HMM PF01041%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR02379 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0189 YpsIP31758_0190 YpsIP31758_0190 YpsIP31758_0190 214626 215882 + polysaccharide biosynthesis protein identified by match to protein family HMM PF01943 gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0190 YpsIP31758_0191 YpsIP31758_0191 wecF wecF 215905 216990 + 4-alpha-L-fucosyltransferase identified by similarity to SP:P56258%3B match to protein family HMM PF07429 gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0191 YpsIP31758_0192 YpsIP31758_0192 YpsIP31758_0192 216987 218351 + ECA biosynthesis protein WzyE identified by match to protein family HMM PF06899 gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0192 YpsIP31758_0193 YpsIP31758_0193 YpsIP31758_0193 218360 219100 + glycosyl transferase%2C WecB/TagA/CpsF family identified by match to protein family HMM PF03808%3B match to protein family HMM TIGR00696 gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0193 YpsIP31758_0194 YpsIP31758_0194 YpsIP31758_0194 219639 221030 + amino acid permease family protein identified by similarity to SP:P27837%3B match to protein family HMM PF00324 gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0194 YpsIP31758_0195 YpsIP31758_0195 hemY hemY 222533 223753 - hemY protein identified by match to protein family HMM PF07219%3B match to protein family HMM PF07719%3B match to protein family HMM TIGR00540 gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0195 YpsIP31758_0196 YpsIP31758_0196 YpsIP31758_0196 223756 224880 - putative uroporphyrinogen III methylase identified by similarity to SP:P09127%3B match to protein family HMM PF04375 gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0196 YpsIP31758_0197 YpsIP31758_0197 hemD hemD 224911 225660 - uroporphyrinogen-III synthase identified by match to protein family HMM PF02602 gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0197 YpsIP31758_0198 YpsIP31758_0198 hemC hemC 225657 226598 - porphobilinogen deaminase identified by match to protein family HMM PF01379%3B match to protein family HMM PF03900%3B match to protein family HMM TIGR00212 gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0198 YpsIP31758_0199 YpsIP31758_0199 YpsIP31758_0199 226601 226714 + hypothetical protein identified by glimmer%3B putative gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0199 YpsIP31758_0200 YpsIP31758_0200 YpsIP31758_0200 226819 227028 - hypothetical protein identified by glimmer%3B putative gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0200 YpsIP31758_0201 YpsIP31758_0201 cyaA cyaA 227092 229644 + adenylate cyclase%2C class I identified by match to protein family HMM PF01295 gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0201 YpsIP31758_0202 YpsIP31758_0202 YpsIP31758_0202 229735 231243 - hypothetical protein identified by glimmer%3B putative gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0202 YpsIP31758_0203 YpsIP31758_0203 YpsIP31758_0203 231429 231752 - cyaY protein identified by match to protein family HMM PF01491%3B match to protein family HMM TIGR03421 gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0203 YpsIP31758_0204 YpsIP31758_0204 YpsIP31758_0204 231904 232104 + putative lipoprotein identified by similarity to GB:CAC93314.1 gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0204 YpsIP31758_0205 YpsIP31758_0205 dapF dapF 232287 233111 + diaminopimelate epimerase identified by match to protein family HMM PF01678%3B match to protein family HMM TIGR00652 gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0205 YpsIP31758_0206 YpsIP31758_0206 YpsIP31758_0206 233176 233880 + conserved hypothetical protein identified by similarity to SP:P23305%3B match to protein family HMM PF04340 gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0206 YpsIP31758_0207 YpsIP31758_0207 xerC xerC 233877 234788 + tyrosine recombinase XerC identified by similarity to GB:AAM83976.1%3B match to protein family HMM PF00589%3B match to protein family HMM PF02899%3B match to protein family HMM TIGR02224 gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0207 YpsIP31758_0208 YpsIP31758_0208 YpsIP31758_0208 234788 235504 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549 gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0208 YpsIP31758_0209 YpsIP31758_0209 uvrD uvrD 235603 237765 + DNA helicase II identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR01075 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0209 YpsIP31758_0210 YpsIP31758_0210 YpsIP31758_0210 237879 238544 - transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0210 YpsIP31758_0211 YpsIP31758_0211 YpsIP31758_0211 238972 240204 + conserved hypothetical protein identified by similarity to RF:YP_049077.1%3B match to protein family HMM PF06792 gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0211 YpsIP31758_0212 YpsIP31758_0212 YpsIP31758_0212 240230 241060 + conserved hypothetical protein identified by similarity to GB:CAG73882.1 gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0212 YpsIP31758_0213 YpsIP31758_0213 YpsIP31758_0213 241259 241393 - hypothetical protein identified by glimmer%3B putative gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0213 YpsIP31758_0214 YpsIP31758_0214 corA corA 241709 242659 + magnesium and cobalt transport protein CorA identified by match to protein family HMM PF01544%3B match to protein family HMM TIGR00383 gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0214 YpsIP31758_0215 YpsIP31758_0215 rarD rarD 242757 243647 - RarD protein identified by match to protein family HMM PF00892%3B match to protein family HMM TIGR00688 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0215 YpsIP31758_0216 YpsIP31758_0216 YpsIP31758_0216 243734 244204 - thioesterase family protein identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00369 gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0216 YpsIP31758_0217 YpsIP31758_0217 YpsIP31758_0217 244426 245304 + phospholipase A1 identified by match to protein family HMM PF02253 gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0217 YpsIP31758_0218 YpsIP31758_0218 recQ recQ 245381 247213 + ATP-dependent DNA helicase RecQ identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF00570%3B match to protein family HMM TIGR00614%3B match to protein family HMM TIGR01389 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0218 YpsIP31758_0219 YpsIP31758_0219 rhtC rhtC 247320 247940 + threonine efflux protein RhtC identified by similarity to SP:P0AG38%3B match to protein family HMM PF01810%3B match to protein family HMM TIGR00949 gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0219 YpsIP31758_0220 YpsIP31758_0220 rhtB rhtB 247991 248611 - homoserine Rht transporter RhtB identified by similarity to SP:P27847%3B match to protein family HMM PF01810 gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0220 YpsIP31758_0221 YpsIP31758_0221 pldB pldB 248864 249859 + lysophospholipase L2 identified by similarity to SP:P07000%3B match to protein family HMM PF00561 gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0221 YpsIP31758_0222 YpsIP31758_0222 YpsIP31758_0222 249894 250703 + hydrolase%2C Cof family identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0222 YpsIP31758_0223 YpsIP31758_0223 YpsIP31758_0223 251078 252313 + conserved domain protein identified by similarity to GB:AAS63388.1 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0223 YpsIP31758_0224 YpsIP31758_0224 glpQ glpQ 252387 253502 - glycerophosphoryl diester phosphodiesterase identified by similarity to SP:P09394%3B match to protein family HMM PF03009 gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0224 YpsIP31758_0225 YpsIP31758_0225 glpT glpT 253689 255041 - glycerol-3-phosphate transporter identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00712%3B match to protein family HMM TIGR00881 gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0225 YpsIP31758_0226 YpsIP31758_0226 YpsIP31758_0226 255265 255423 - hypothetical protein identified by glimmer%3B putative gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0226 YpsIP31758_0227 YpsIP31758_0227 glpA glpA 255422 257077 + anaerobic glycerol-3-phosphate dehydrogenase%2C A subunit identified by similarity to SP:P0A9C0%3B match to protein family HMM PF01266%3B match to protein family HMM PF04324%3B match to protein family HMM TIGR03377 gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0227 YpsIP31758_0228 YpsIP31758_0228 glpB glpB 257067 258341 + anaerobic glycerol-3-phosphate dehydrogenase%2C B subunit identified by similarity to SP:P13033%3B match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM TIGR03378 gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0228 YpsIP31758_0229 YpsIP31758_0229 glpC glpC 258386 259633 + anaerobic glycerol-3-phosphate dehydrogenase%2C C subunit identified by similarity to SP:P0A996%3B match to protein family HMM PF00037%3B match to protein family HMM PF02754%3B match to protein family HMM TIGR03379 gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0229 YpsIP31758_0230 YpsIP31758_0230 YpsIP31758_0230 259795 260322 - putative lipoprotein identified by similarity to GB:CAG77252.1 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0230 YpsIP31758_0231 YpsIP31758_0231 YpsIP31758_0231 260452 261120 - putative membrane protein identified by match to protein family HMM PF02592%3B match to protein family HMM TIGR00697 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0231 YpsIP31758_0232 YpsIP31758_0232 tusA tusA 261381 261635 + sulfurtransferase TusA identified by similarity to SP:P0A890%3B match to protein family HMM PF01206 gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0232 YpsIP31758_0233 YpsIP31758_0233 cadA cadA 261684 264050 - cadmium-translocating P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01512%3B match to protein family HMM TIGR01525 gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0233 YpsIP31758_0234 YpsIP31758_0234 YpsIP31758_0234 264464 265090 - putative membrane protein identified by match to protein family HMM PF07947 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0234 YpsIP31758_0235 YpsIP31758_0235 YpsIP31758_0235 265380 265700 + conserved hypothetical protein identified by similarity to GB:CAG77247.1 gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0235 YpsIP31758_0236 YpsIP31758_0236 YpsIP31758_0236 265912 266331 + conserved hypothetical protein identified by similarity to GB:AAV79236.1 gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0236 YpsIP31758_0237 YpsIP31758_0237 YpsIP31758_0237 266518 266790 - conserved hypothetical protein identified by match to protein family HMM PF06611 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0237 YpsIP31758_0238 YpsIP31758_0238 YpsIP31758_0238 266780 267442 - putative methyltransferase identified by similarity to SP:P0ADX9%3B match to protein family HMM PF03602%3B match to protein family HMM TIGR00095 gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0238 YpsIP31758_0239 YpsIP31758_0239 ftsY ftsY 267724 269349 + cell division protein FtsY identified by similarity to SP:P10121%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064 gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0239 YpsIP31758_0240 YpsIP31758_0240 ftsE ftsE 269355 270023 + cell division ATP-binding protein FtsE identified by similarity to GB:AAK20881.1%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR00960%3B match to protein family HMM TIGR02673 gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0240 YpsIP31758_0241 YpsIP31758_0241 YpsIP31758_0241 270013 270966 + putative protein insertion permease FtsX identified by similarity to SP:P0AC30%3B match to protein family HMM PF02687%3B match to protein family HMM TIGR00439 gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0241 YpsIP31758_0242 YpsIP31758_0242 rpoH rpoH 271277 272134 + alternative sigma factor RpoH identified by similarity to SP:P00580%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02392%3B match to protein family HMM TIGR02937 gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0242 YpsIP31758_0243 YpsIP31758_0243 YpsIP31758_0243 272337 272729 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0243 YpsIP31758_0244 YpsIP31758_0244 livK livK 273152 274267 + high-affinity branched-chain amino acid ABC transporter%2C periplasmic leucine-specific-binding protein identified by similarity to SP:P04816%3B match to protein family HMM PF01094 gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0244 YpsIP31758_0245 YpsIP31758_0245 livH livH 274448 275374 + high-affinity branched-chain amino acid ABC transporter%2C permease protein identified by similarity to SP:P08340%3B match to protein family HMM PF02653 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0245 YpsIP31758_0246 YpsIP31758_0246 livM livM 275371 276657 + high-affinity branched-chain amino acid ABC transporter%2C permease protein identified by similarity to SP:P22729%3B match to protein family HMM PF02653 gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0246 YpsIP31758_0247 YpsIP31758_0247 livG livG 276654 277421 + high-affinity branched-chain amino acid ABC transporter%2C ATP-binding protein identified by similarity to SP:P0A193%3B match to protein family HMM PF00005 gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0247 YpsIP31758_0248 YpsIP31758_0248 livF livF 277466 278167 + high-affinity branched-chain amino acid ABC transporter%2C ATP-binding protein identified by similarity to SP:P22731%3B match to protein family HMM PF00005 gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0248 YpsIP31758_0249 YpsIP31758_0249 YpsIP31758_0249 278395 278856 + hypothetical protein identified by glimmer%3B putative gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0249 YpsIP31758_0250 YpsIP31758_0250 YpsIP31758_0250 278971 280077 - hypothetical protein identified by glimmer%3B putative gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0250 YpsIP31758_0251 YpsIP31758_0251 YpsIP31758_0251 280218 280736 - hypothetical protein identified by glimmer%3B putative gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0251 YpsIP31758_0252 YpsIP31758_0252 YpsIP31758_0252 280798 281445 - conserved hypothetical protein gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0252 YpsIP31758_0253 YpsIP31758_0253 YpsIP31758_0253 281417 282103 - conserved hypothetical protein gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0253 YpsIP31758_0254 YpsIP31758_0254 YpsIP31758_0254 282121 284436 - conserved hypothetical protein gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0254 YpsIP31758_0255 YpsIP31758_0255 YpsIP31758_0255 284703 285227 - conserved hypothetical protein gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0255 YpsIP31758_0256 YpsIP31758_0256 ugpB ugpB 285749 287068 + glycerol-3-phosphate ABC transporter%2C periplasmic glycerol-3-phosphate binding protein identified by similarity to SP:P10904%3B match to protein family HMM PF01547 gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0256 YpsIP31758_0257 YpsIP31758_0257 ugpA ugpA 287366 288253 + glycerol-3-phosphate ABC transporter%2C permease protein identified by similarity to SP:P10905%3B match to protein family HMM PF00528 gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0257 YpsIP31758_0258 YpsIP31758_0258 ugpE ugpE 288250 289095 + glycerol-3-phosphate ABC transporter%2C permease protein identified by similarity to SP:P10906%3B match to protein family HMM PF00528 gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0258 YpsIP31758_0259 YpsIP31758_0259 ugpC ugpC 289102 290175 + glycerol-3-phosphate ABC transporter%2C ATP-binding protein identified by similarity to SP:P10907%3B match to protein family HMM PF00005 gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0259 YpsIP31758_0260 YpsIP31758_0260 ugpQ ugpQ 290172 290921 + glycerophosphoryl diester phosphodiesterase identified by similarity to SP:P10908%3B match to protein family HMM PF03009 gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0260 YpsIP31758_0261 YpsIP31758_0261 YpsIP31758_0261 291022 291978 + transporter%2C auxin efflux carrier (AEC) family protein identified by match to protein family HMM PF03547 gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0261 YpsIP31758_0262 YpsIP31758_0262 metR metR 293119 294072 - transcriptional regulator MetR identified by similarity to SP:P0A9F9%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0262 YpsIP31758_0263 YpsIP31758_0263 YpsIP31758_0263 292332 293231 + carboxylate/amino acid/amine transporter yigA%3B identified by match to protein family HMM PF00892%3B match to protein family HMM TIGR00950 gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0263 YpsIP31758_0264 YpsIP31758_0264 metE metE 294178 296454 + 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase identified by similarity to SP:P25665%3B match to protein family HMM PF01717%3B match to protein family HMM TIGR01371 gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0264 YpsIP31758_0265 YpsIP31758_0265 YpsIP31758_0265 296509 297381 - dienelactone hydrolase family protein identified by match to protein family HMM PF01738 gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0265 YpsIP31758_0266 YpsIP31758_0266 udp udp 297808 298569 + uridine phosphorylase identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01718 gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0266 YpsIP31758_0267 YpsIP31758_0267 YpsIP31758_0267 298696 299565 + conserved hypothetical protein identified by similarity to GB:CAG73105.1 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0267 YpsIP31758_0268 YpsIP31758_0268 YpsIP31758_0268 299915 301726 + carbon starvation protein CstA identified by match to protein family HMM PF02554 gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0268 YpsIP31758_0269 YpsIP31758_0269 YpsIP31758_0269 302246 302776 + DedA family protein identified by similarity to SP:P30149 gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0269 YpsIP31758_0270 YpsIP31758_0270 YpsIP31758_0270 302984 304489 + RmuC domain protein identified by match to protein family HMM PF02646 gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0270 YpsIP31758_0271 YpsIP31758_0271 ubiE ubiE 304581 305336 + ubiquinone/menaquinone biosynthesis methyltransferase UbiE identified by match to protein family HMM PF01209%3B match to protein family HMM TIGR01934 gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0271 YpsIP31758_0272 YpsIP31758_0272 YpsIP31758_0272 305368 306000 + conserved hypothetical protein identified by similarity to GB:CAG73116.1%3B match to protein family HMM PF06843 gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0272 YpsIP31758_0273 YpsIP31758_0273 ubiB ubiB 306000 307631 + 2-polyprenylphenol 6-hydroxylase identified by match to protein family HMM PF03109%3B match to protein family HMM TIGR01982 gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0273 YpsIP31758_0274 YpsIP31758_0274 tatA1 tatA1 307811 308077 + twin arginine-targeting protein translocase TatA identified by similarity to SP:P69428%3B match to protein family HMM PF02416%3B match to protein family HMM TIGR01411 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0274 YpsIP31758_0275 YpsIP31758_0275 tatB tatB 308081 308743 + twin arginine-targeting protein translocase TatB identified by match to protein family HMM TIGR01410 gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0275 YpsIP31758_0276 YpsIP31758_0276 tatC tatC 308746 309522 + twin arginine-targeting protein translocase TatC identified by similarity to SP:P69423%3B match to protein family HMM PF00902%3B match to protein family HMM TIGR00945 gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0276 YpsIP31758_0277 YpsIP31758_0277 tatD tatD 309578 310360 + deoxyribonuclease TatD identified by similarity to SP:P27859%3B match to protein family HMM PF01026 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0277 YpsIP31758_0278 YpsIP31758_0278 hemB hemB 310375 311397 + delta-aminolevulinic acid dehydratase identified by match to protein family HMM PF00490 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0278 YpsIP31758_0279 YpsIP31758_0279 rfaH rfaH 311507 311995 - transcriptional activator RfaH identified by match to protein family HMM PF02357%3B match to protein family HMM TIGR01955 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0279 YpsIP31758_0280 YpsIP31758_0280 ubiD ubiD 312243 313739 + 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified by similarity to SP:P0AAB4%3B match to protein family HMM PF01977%3B match to protein family HMM TIGR00148 gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0280 YpsIP31758_0281 YpsIP31758_0281 YpsIP31758_0281 313794 314495 + NAD(P)H-flavin reductase identified by similarity to SP:P43129%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0281 YpsIP31758_0282 YpsIP31758_0282 fadA fadA 314638 315801 - acetyl-CoA C-acyltransferase FadA identified by match to protein family HMM PF00108%3B match to protein family HMM PF02803%3B match to protein family HMM TIGR01930%3B match to protein family HMM TIGR02445 gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0282 YpsIP31758_0283 YpsIP31758_0283 fadB fadB 315813 318002 - fatty oxidation complex%2C alpha subunit FadB identified by match to protein family HMM PF00378%3B match to protein family HMM PF00725%3B match to protein family HMM PF02737%3B match to protein family HMM TIGR02437 gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0283 YpsIP31758_0284 YpsIP31758_0284 pepQ pepQ 318329 319660 + Xaa-Pro dipeptidase identified by similarity to SP:P21165%3B match to protein family HMM PF00557 gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0284 YpsIP31758_0285 YpsIP31758_0285 YpsIP31758_0285 319660 320271 + conserved hypothetical protein identified by similarity to GB:CAE16772.1%3B match to protein family HMM PF01205%3B match to protein family HMM TIGR00257 gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0285 YpsIP31758_0286 YpsIP31758_0286 trkH trkH 320311 321762 + Trk system potassium uptake protein TrkH identified by similarity to SP:P21166%3B match to protein family HMM PF02386%3B match to protein family HMM TIGR00933 gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0286 YpsIP31758_0287 YpsIP31758_0287 hemG hemG 321784 322317 + protoporphyrinogen oxidase identified by similarity to SP:P0ACB4 gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0287 YpsIP31758_0291 YpsIP31758_0291 YpsIP31758_0291 328572 329780 - IS285%2C transposase identified by match to protein family HMM PF00872 gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0291 YpsIP31758_0292 YpsIP31758_0292 metA metA 330299 331228 + homoserine O-succinyltransferase identified by match to protein family HMM PF04204%3B match to protein family HMM TIGR01001 gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0292 YpsIP31758_0293 YpsIP31758_0293 YpsIP31758_0293 331427 331570 - hypothetical protein identified by glimmer%3B putative gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0293 YpsIP31758_0294 YpsIP31758_0294 aceB aceB 331648 333246 + malate synthase A identified by match to protein family HMM PF01274%3B match to protein family HMM TIGR01344 gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0294 YpsIP31758_0295 YpsIP31758_0295 aceA aceA 333293 334600 + isocitrate lyase identified by match to protein family HMM PF00463%3B match to protein family HMM TIGR01346 gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0295 YpsIP31758_0296 YpsIP31758_0296 aceK aceK 334856 336583 + isocitrate dehydrogenase kinase/phosphatase identified by similarity to SP:P11071%3B match to protein family HMM PF06315 gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0296 YpsIP31758_0297 YpsIP31758_0297 iclR iclR 336703 337545 - acetate operon repressor identified by similarity to SP:P16528%3B match to protein family HMM PF01614 gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0297 YpsIP31758_0298 YpsIP31758_0298 metH metH 337763 341455 + methionine synthase identified by match to protein family HMM PF00809%3B match to protein family HMM PF02310%3B match to protein family HMM PF02574%3B match to protein family HMM PF02607%3B match to protein family HMM PF02965%3B match to protein family HMM TIGR02082 gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0298 YpsIP31758_0299 YpsIP31758_0299 shlA shlA 341552 346408 - hemolysin identified by similarity to SP:P15320%3B match to protein family HMM PF05594%3B match to protein family HMM PF05860%3B match to protein family HMM TIGR01901 gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0299 YpsIP31758_0300 YpsIP31758_0300 YpsIP31758_0300 346478 348166 - hemolysin activator protein identified by similarity to SP:P16465%3B match to protein family HMM PF03865 gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0300 YpsIP31758_0301 YpsIP31758_0301 YpsIP31758_0301 348611 349996 - asparate kinase%2C monofunctional class identified by match to protein family HMM PF00696%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00656%3B match to protein family HMM TIGR00657 gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0301 YpsIP31758_0302 YpsIP31758_0302 pgi pgi 350366 352012 + glucose-6-phosphate isomerase identified by match to protein family HMM PF00342 gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0302 YpsIP31758_0303 YpsIP31758_0303 psiE psiE 352139 352546 + protein PsiE identified by similarity to SP:P0A7C8%3B match to protein family HMM PF06146 gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0303 YpsIP31758_0304 YpsIP31758_0304 malG malG 352689 353579 - maltose ABC transporter%2C permease protein identified by similarity to SP:P18814%3B match to protein family HMM PF00528 gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0304 YpsIP31758_0305 YpsIP31758_0305 malF malF 353593 355170 - maltose ABC transporter%2C permease protein identified by similarity to SP:P02916%3B match to protein family HMM PF00528 gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0305 YpsIP31758_0306 YpsIP31758_0306 malE2 malE2 355357 356568 - maltose ABC transporter%2C periplasmic maltose-binding protein identified by similarity to SP:P02928%3B match to protein family HMM PF01547 gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0306 YpsIP31758_0307 YpsIP31758_0307 YpsIP31758_0307 357135 357350 - hypothetical protein identified by glimmer%3B putative gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0307 YpsIP31758_0308 YpsIP31758_0308 malK2 malK2 357396 358505 + maltose ABC transporter%2C ATP-binding protein identified by similarity to SP:P19566%3B match to protein family HMM PF00005%3B match to protein family HMM PF03459 gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0308 YpsIP31758_0309 YpsIP31758_0309 lamB lamB 358576 359847 + maltoporin LamB identified by similarity to SP:P02943%3B similarity to SP:P26466%3B match to protein family HMM PF02264 gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0309 YpsIP31758_0310 YpsIP31758_0310 malM malM 360088 360999 + maltose operon periplasmic protein identified by similarity to SP:P03841%3B match to protein family HMM PF07148 gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0310 YpsIP31758_0311 YpsIP31758_0311 YpsIP31758_0311 361733 361849 - hypothetical protein identified by glimmer%3B putative gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0311 YpsIP31758_0312 YpsIP31758_0312 YpsIP31758_0312 361901 362419 - conserved hypothetical protein identified by similarity to GB:AAV33649.1%3B match to protein family HMM PF05638%3B match to protein family HMM TIGR03344 gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0312 YpsIP31758_0313 YpsIP31758_0313 YpsIP31758_0313 362943 363440 + conserved hypothetical protein identified by similarity to GB:CAE12667.1%3B match to protein family HMM PF05591%3B match to protein family HMM TIGR03358 gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0313 YpsIP31758_0314 YpsIP31758_0314 YpsIP31758_0314 363508 364989 + conserved hypothetical protein identified by similarity to GB:CAE12666.1%3B match to protein family HMM PF05943%3B match to protein family HMM TIGR03355 gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0314 YpsIP31758_0315 YpsIP31758_0315 YpsIP31758_0315 364996 365436 + conserved hypothetical protein identified by match to protein family HMM PF07025%3B match to protein family HMM TIGR03357 gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0315 YpsIP31758_0316 YpsIP31758_0316 YpsIP31758_0316 365436 367256 + conserved hypothetical protein identified by similarity to GB:AAM83635.1%3B match to protein family HMM PF05947%3B match to protein family HMM TIGR03359 gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0316 YpsIP31758_0317 YpsIP31758_0317 YpsIP31758_0317 367277 368308 + conserved hypothetical protein identified by match to protein family HMM PF06996%3B match to protein family HMM TIGR03347 gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0317 YpsIP31758_0318 YpsIP31758_0318 YpsIP31758_0318 368434 369750 + FHA domain protein identified by match to protein family HMM PF00498%3B match to protein family HMM TIGR03354 gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0318 YpsIP31758_0319 YpsIP31758_0319 YpsIP31758_0319 369750 370295 + putative lipoprotein identified by similarity to GB:AAM83870.1%3B match to protein family HMM TIGR03352 gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0319 YpsIP31758_0320 YpsIP31758_0320 YpsIP31758_0320 370298 371644 + conserved hypothetical protein identified by match to protein family HMM PF05936%3B match to protein family HMM TIGR03353 gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0320 YpsIP31758_0321 YpsIP31758_0321 YpsIP31758_0321 371644 372411 + conserved hypothetical protein identified by similarity to GB:CAE12659.1%3B match to protein family HMM TIGR03349 gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0321 YpsIP31758_0322 YpsIP31758_0322 clpV2 clpV2 372422 375025 + type VI secretion ATPase%2C ClpV1 family identified by similarity to RF:ZP_00754147.1%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR03345 gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0322 YpsIP31758_0323 YpsIP31758_0323 YpsIP31758_0323 375022 375819 + transcriptional regulator%2C Fis family identified by match to protein family HMM PF02954 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0323 YpsIP31758_0324 YpsIP31758_0324 YpsIP31758_0324 375816 376502 + conserved hypothetical protein identified by similarity to GB:CAC92830.1%3B match to protein family HMM TIGR03360 gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0324 YpsIP31758_0325 YpsIP31758_0325 YpsIP31758_0325 376508 377896 + ImpA domain protein identified by match to protein family HMM PF06812%3B match to protein family HMM TIGR03362 gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0325 YpsIP31758_0326 YpsIP31758_0326 YpsIP31758_0326 377928 381461 + putative lipoprotein identified by match to protein family HMM PF06744%3B match to protein family HMM PF06761%3B match to protein family HMM TIGR03348 gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0326 YpsIP31758_0327 YpsIP31758_0327 YpsIP31758_0327 381613 382926 + ImpA domain protein identified by match to protein family HMM PF06812 gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0327 YpsIP31758_0328 YpsIP31758_0328 YpsIP31758_0328 382948 385170 + Rhs element Vgr protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0328 YpsIP31758_0329 YpsIP31758_0329 YpsIP31758_0329 385176 385634 + conserved hypothetical protein identified by similarity to GB:CAD08750.1 gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0329 YpsIP31758_0330 YpsIP31758_0330 YpsIP31758_0330 385627 389835 + RHS/YD repeat protein identified by match to protein family HMM PF03527%3B match to protein family HMM PF05488%3B match to protein family HMM PF05593%3B match to protein family HMM TIGR01643 gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0330 YpsIP31758_0331 YpsIP31758_0331 YpsIP31758_0331 389845 390717 + conserved hypothetical protein gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0331 YpsIP31758_0332 YpsIP31758_0332 YpsIP31758_0332 391172 391342 + hypothetical protein identified by glimmer%3B putative gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0332 YpsIP31758_0333 YpsIP31758_0333 YpsIP31758_0333 391335 395591 + RHS/YD repeat protein identified by match to protein family HMM PF03527%3B match to protein family HMM PF05488%3B match to protein family HMM PF05593%3B match to protein family HMM TIGR01643 gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0333 YpsIP31758_0334 YpsIP31758_0334 YpsIP31758_0334 395591 396100 + hypothetical protein identified by glimmer%3B putative gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0334 YpsIP31758_0335 YpsIP31758_0335 YpsIP31758_0335 396154 396507 - conserved hypothetical protein identified by similarity to GB:CAG76310.1 gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0335 YpsIP31758_0336 YpsIP31758_0336 YpsIP31758_0336 396504 396728 - conserved hypothetical protein identified by similarity to GB:AAS64082.1 gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0336 YpsIP31758_0337 YpsIP31758_0337 YpsIP31758_0337 396810 397217 - DNA-binding protein identified by match to protein family HMM PF01381 gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0337 YpsIP31758_0338 YpsIP31758_0338 YpsIP31758_0338 397380 397556 + conserved hypothetical protein gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0338 YpsIP31758_0339 YpsIP31758_0339 YpsIP31758_0339 397578 399776 + putative VgrG protein identified by match to protein family HMM PF04524%3B match to protein family HMM PF06715%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0339 YpsIP31758_0340 YpsIP31758_0340 YpsIP31758_0340 399779 400201 + conserved hypothetical protein identified by similarity to GB:CAD18289.1 gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0340 YpsIP31758_0341 YpsIP31758_0341 YpsIP31758_0341 400246 404829 + YD/RHS repeat protein identified by match to protein family HMM PF05488%3B match to protein family HMM PF05593%3B match to protein family HMM TIGR01643 gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0341 YpsIP31758_0342 YpsIP31758_0342 YpsIP31758_0342 405223 405339 - hypothetical protein identified by glimmer%3B putative gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0342 YpsIP31758_0343 YpsIP31758_0343 YpsIP31758_0343 405371 405616 + putative VgrG protein%2C fragment%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0343 YpsIP31758_0344 YpsIP31758_0344 YpsIP31758_0344 405893 406792 - AP endonuclease%2C family 2 identified by match to protein family HMM PF01261 gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0344 YpsIP31758_0345 YpsIP31758_0345 YpsIP31758_0345 406789 407919 - oxidoreductase%2C NAD-binding identified by match to protein family HMM PF01408 gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0345 YpsIP31758_0346 YpsIP31758_0346 YpsIP31758_0346 409046 409192 - hypothetical protein identified by glimmer%3B putative gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0346 YpsIP31758_0347 YpsIP31758_0347 YpsIP31758_0347 408189 409055 + transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311 gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0347 YpsIP31758_0348 YpsIP31758_0348 YpsIP31758_0348 409216 409719 - RbsD/FucU family transport protein identified by match to protein family HMM PF05025 gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0348 YpsIP31758_0349 YpsIP31758_0349 YpsIP31758_0349 409725 410654 - putative ribokinase identified by match to protein family HMM PF00294 gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0349 YpsIP31758_0350 YpsIP31758_0350 YpsIP31758_0350 410859 411560 - putative deoxyribose-phosphate aldolase identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0350 YpsIP31758_0351 YpsIP31758_0351 YpsIP31758_0351 410698 410862 + hypothetical protein identified by glimmer%3B putative gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0351 YpsIP31758_0352 YpsIP31758_0352 YpsIP31758_0352 412033 412614 + NADPH-dependent FMN reductase identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358 gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0352 YpsIP31758_0353 YpsIP31758_0353 YpsIP31758_0353 412629 413750 + putative ABC transporter%2C aliphatic sulfonates binding protein identified by similarity to SP:P75853%3B match to protein family HMM PF04069%3B match to protein family HMM TIGR01728 gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0353 YpsIP31758_0354 YpsIP31758_0354 ssuD ssuD 413769 414917 + alkanesulfonate monooxygenase identified by similarity to SP:O85764%3B match to protein family HMM PF00296 gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0354 YpsIP31758_0355 YpsIP31758_0355 YpsIP31758_0355 414929 415723 + putative ABC aliphatic sulfonates transporter%2C permease subunit identified by similarity to SP:P75851%3B match to protein family HMM PF00528 gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0355 YpsIP31758_0356 YpsIP31758_0356 YpsIP31758_0356 415720 416535 + putative ABC aliphatic sulfonates transporter%2C ATP-binding subunit identified by similarity to SP:P0AAI1%3B match to protein family HMM PF00005 gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0356 YpsIP31758_0357 YpsIP31758_0357 dinJ dinJ 417154 417411 - DNA-damage-inducible protein J identified by similarity to SP:Q47150%3B match to protein family HMM PF04221%3B match to protein family HMM TIGR02384 gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0357 YpsIP31758_0358 YpsIP31758_0358 YpsIP31758_0358 417811 419166 + xanthine/uracil permease family protein identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916 gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0358 YpsIP31758_0359 YpsIP31758_0359 YpsIP31758_0359 419483 421132 + Na+/H+ antiporter identified by match to protein family HMM PF00999%3B match to protein family HMM TIGR00831 gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0359 YpsIP31758_0360 YpsIP31758_0360 YpsIP31758_0360 421350 422537 - hypothetical protein identified by glimmer%3B putative gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0360 YpsIP31758_0361 YpsIP31758_0361 htrB2 htrB2 422689 423609 - lipid A biosynthesis lauroyl acyltransferase identified by similarity to SP:P0ACV0%3B match to protein family HMM PF03279%3B match to protein family HMM TIGR02207 gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0361 YpsIP31758_0362 YpsIP31758_0362 YpsIP31758_0362 423878 424003 + hypothetical protein identified by glimmer%3B putative gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0362 YpsIP31758_0363 YpsIP31758_0363 YpsIP31758_0363 424140 424259 + hypothetical protein identified by glimmer%3B putative gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0363 YpsIP31758_0364 YpsIP31758_0364 YpsIP31758_0364 424461 425450 + carbohydrate uptake (CUT2 family) ABC transporter%2C periplasmic carbohydrate-binding protein gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0364 YpsIP31758_0365 YpsIP31758_0365 YpsIP31758_0365 425654 427150 + carbohydrate uptake (CUT2 family) ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0365 YpsIP31758_0366 YpsIP31758_0366 YpsIP31758_0366 427143 428132 + carbohydrate uptake (CUT2 family) ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0366 YpsIP31758_0367 YpsIP31758_0367 YpsIP31758_0367 428134 429087 + carbohydrate uptake (CUT2 family) ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0367 YpsIP31758_0368 YpsIP31758_0368 YpsIP31758_0368 429106 430743 + pentulose kinase%2C FGGY family identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01315 gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0368 YpsIP31758_0369 YpsIP31758_0369 YpsIP31758_0369 430740 431345 + SIS domain protein identified by match to protein family HMM PF01380 gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0369 YpsIP31758_0370 YpsIP31758_0370 YpsIP31758_0370 431552 432403 - glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0370 YpsIP31758_0371 YpsIP31758_0371 YpsIP31758_0371 432657 434003 + conserved hypothetical protein gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0371 YpsIP31758_0372 YpsIP31758_0372 YpsIP31758_0372 434155 435330 - conserved hypothetical protein identified by similarity to GB:CAC93110.1 gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0372 YpsIP31758_0373 YpsIP31758_0373 YpsIP31758_0373 435391 435504 + hypothetical protein identified by glimmer%3B putative gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0373 YpsIP31758_0374 YpsIP31758_0374 YpsIP31758_0374 435851 436063 - 'Cold-shock' DNA-binding domain identified by match to protein family HMM PF00313 gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0374 YpsIP31758_0375 YpsIP31758_0375 YpsIP31758_0375 436323 436535 - cold shock DNA-binding domain protein identified by similarity to SP:P0A986%3B match to protein family HMM PF00313 gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0375 YpsIP31758_0376 YpsIP31758_0376 YpsIP31758_0376 436795 437007 - cold shock DNA-binding domain protein identified by similarity to SP:P0A986%3B match to protein family HMM PF00313 gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0376 YpsIP31758_0377 YpsIP31758_0377 YpsIP31758_0377 437253 437438 + hypothetical protein identified by glimmer%3B putative gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0377 YpsIP31758_0378 YpsIP31758_0378 pcp1 pcp1 437542 438009 - outer membrane lipoprotein PcP identified by similarity to SP:P31484%3B match to protein family HMM PF05433 gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0378 YpsIP31758_0379 YpsIP31758_0379 YpsIP31758_0379 438485 439297 + metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0379 YpsIP31758_0380 YpsIP31758_0380 YpsIP31758_0380 439362 440252 + 6-phosphogluconate dehydrogenase NAD-binding domain protein identified by match to protein family HMM PF03446 gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0380 YpsIP31758_0381 YpsIP31758_0381 YpsIP31758_0381 440444 440839 + carboxymuconolactone decarboxylase family protein identified by match to protein family HMM PF02627 gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0381 YpsIP31758_0382 YpsIP31758_0382 YpsIP31758_0382 440993 442357 + transporter%2C major facilitator family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0382 YpsIP31758_0383 YpsIP31758_0383 YpsIP31758_0383 442447 443121 + transcriptional regulator%2C GntR family identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0383 YpsIP31758_0384 YpsIP31758_0384 YpsIP31758_0384 443187 443663 + hypothetical protein identified by glimmer%3B putative gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0384 YpsIP31758_0385 YpsIP31758_0385 fis fis 444441 444737 - DNA-binding protein Fis identified by similarity to SP:P0A6R3%3B match to protein family HMM PF02954 gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0385 YpsIP31758_0386 YpsIP31758_0386 YpsIP31758_0386 444762 445727 - dihydrouridine synthase identified by match to protein family HMM PF01180%3B match to protein family HMM PF01207%3B match to protein family HMM TIGR00737 gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0386 YpsIP31758_0387 YpsIP31758_0387 YpsIP31758_0387 446183 446296 - hypothetical protein identified by glimmer%3B putative gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0387 YpsIP31758_0388 YpsIP31758_0388 prmA prmA 446333 447214 - ribosomal protein L11 methyltransferase identified by match to protein family HMM PF01170%3B match to protein family HMM PF05175%3B match to protein family HMM PF06325%3B match to protein family HMM TIGR00406 gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0388 YpsIP31758_0389 YpsIP31758_0389 panF panF 447290 448744 - sodium/pantothenate symporter identified by match to protein family HMM PF00474%3B match to protein family HMM TIGR00813%3B match to protein family HMM TIGR02119 gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0389 YpsIP31758_0390 YpsIP31758_0390 YpsIP31758_0390 448734 448976 - conserved hypothetical protein identified by similarity to GB:AAZ89970.1%3B match to protein family HMM PF06196 gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0390 YpsIP31758_0391 YpsIP31758_0391 accC accC 450583 451932 - acetyl-CoA carboxylase%2C biotin carboxylase identified by match to protein family HMM PF00289%3B match to protein family HMM PF01071%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM TIGR00514 gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0391 YpsIP31758_0392 YpsIP31758_0392 accB accB 451944 452408 - acetyl-CoA carboxylase%2C biotin carboxyl carrier protein identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR00531 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0392 YpsIP31758_0393 YpsIP31758_0393 aroQ aroQ 452566 453018 - 3-dehydroquinate dehydratase%2C type II identified by match to protein family HMM PF01220%3B match to protein family HMM TIGR01088 gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0393 YpsIP31758_0394 YpsIP31758_0394 YpsIP31758_0394 453289 453900 - membrane protein yedZ%3B identified by match to protein family HMM PF01794 gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0394 YpsIP31758_0395 YpsIP31758_0395 yedY yedY 453900 455000 - yedY protein YedY is a periplasmic molybdoprotein that contains a twin-arginine signal peptide. Orthologues of YedY are found in a variety of Gram-negative bacteria. It was proposed that YedY interacts with the membrane-localized YedZ and represents the catalytic subunit of the heterodimer. -EcoCyc:G7059%3B identified by similarity to SP:Q8FGI7%3B match to protein family HMM PF00174%3B match to protein family HMM TIGR01409 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0395 YpsIP31758_0396 YpsIP31758_0396 YpsIP31758_0396 455223 456200 - putative quinone oxidoreductase%2C YhdH/YhfP family protein identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02823 gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0396 YpsIP31758_0397 YpsIP31758_0397 YpsIP31758_0397 456601 458517 + putative diguanylate cyclase/cyclic diguanylate phosphodiesterase protein identified by similarity to SP:P13518%3B match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0397 YpsIP31758_0398 YpsIP31758_0398 mreB mreB 458854 459897 + rod shape-determining protein MreB identified by similarity to SP:P0A9X8%3B match to protein family HMM PF06723%3B match to protein family HMM TIGR00904 gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0398 YpsIP31758_0399 YpsIP31758_0399 mreC mreC 460101 461096 + rod shape-determining protein MreC identified by similarity to SP:P16926%3B match to protein family HMM PF04085%3B match to protein family HMM TIGR00219 gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0399 YpsIP31758_0400 YpsIP31758_0400 mreD mreD 461093 461581 + rod shape-determining protein MreD identified by match to protein family HMM PF04093%3B match to protein family HMM TIGR03426 gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0400 YpsIP31758_0401 YpsIP31758_0401 maf2 maf2 461595 462188 + septum formation protein Maf identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0401 YpsIP31758_0402 YpsIP31758_0402 cafA cafA 462178 463647 + ribonuclease G identified by similarity to SP:P0A9J0%3B match to protein family HMM PF00575%3B match to protein family HMM TIGR00757 gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0402 YpsIP31758_0403 YpsIP31758_0403 YpsIP31758_0403 463741 467658 + conserved hypothetical protein identified by similarity to SP:P46474%3B match to protein family HMM TIGR02099 gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0403 YpsIP31758_0404 YpsIP31758_0404 YpsIP31758_0404 467655 468524 + hydrolase%2C carbon-nitrogen family protein identified by match to protein family HMM PF00795 gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0404 YpsIP31758_0405 YpsIP31758_0405 tldD tldD 468536 469981 + TldD protein protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD. -BioCyc:G7689 Probable peptidase required for the maturation and secretion of the antibiotic peptide MccB17%3B involved in CcdA antidote degradation. -EcoGene:12826%3B identified by similarity to SP:P46473%3B match to protein family HMM PF01523 gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0405 YpsIP31758_0406 YpsIP31758_0406 YpsIP31758_0406 470313 473102 - putative insecticidal toxin complex protein identified by match to protein family HMM TIGR01643 gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0406 YpsIP31758_0407 YpsIP31758_0407 YpsIP31758_0407 473406 476171 - putative insecticidal toxin complex protein identified by similarity to GB:AAO17204.1%3B match to protein family HMM TIGR01643 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0407 YpsIP31758_0408 YpsIP31758_0408 YpsIP31758_0408 476199 478931 - putative insecticidal toxin complex protein identified by match to protein family HMM TIGR01643 gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0408 YpsIP31758_0409 YpsIP31758_0409 YpsIP31758_0409 478956 481832 - putative insecticial toxin complex protein identified by similarity to GB:AAO17204.1%3B match to protein family HMM PF00782%3B match to protein family HMM TIGR01643 gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0409 YpsIP31758_0410 YpsIP31758_0410 YpsIP31758_0410 481887 482006 - hypothetical protein identified by glimmer%3B putative gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0410 YpsIP31758_0411 YpsIP31758_0411 YpsIP31758_0411 482047 482406 - conserved hypothetical protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0411 YpsIP31758_0412 YpsIP31758_0412 YpsIP31758_0412 482403 482804 - peptidase M15 family identified by similarity to SP:Q37979 gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0412 YpsIP31758_0413 YpsIP31758_0413 YpsIP31758_0413 482817 483119 - putative phage-related protein gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0413 YpsIP31758_0414 YpsIP31758_0414 YpsIP31758_0414 483253 487770 - putative insecticidal toxin complex protein identified by similarity to GB:AAG09643.1%3B match to protein family HMM PF01839%3B match to protein family HMM PF03534 gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0414 YpsIP31758_0415 YpsIP31758_0415 YpsIP31758_0415 487828 491421 - putative insecticidal toxin complex protein identified by similarity to GB:CAI77374.1 gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0415 YpsIP31758_0416 YpsIP31758_0416 YpsIP31758_0416 491461 494124 - putative insecticial toxin complex protein identified by similarity to GB:AAC38628.1 gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0416 YpsIP31758_0417 YpsIP31758_0417 YpsIP31758_0417 494332 495219 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126 gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0417 YpsIP31758_0418 YpsIP31758_0418 aaeR aaeR 495481 496392 - transcriptional activator AaeR identified by similarity to SP:P67662%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0418 YpsIP31758_0419 YpsIP31758_0419 YpsIP31758_0419 496695 496898 + conserved hypothetical protein identified by match to protein family HMM PF07869 gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0419 YpsIP31758_0420 YpsIP31758_0420 aaeA aaeA 496906 497841 + p-hydroxybenzoic acid efflux pump subunit AaeA identified by similarity to SP:P46482%3B match to protein family HMM PF00529 gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0420 YpsIP31758_0421 YpsIP31758_0421 aaeB aaeB 497843 499798 + p-hydroxybenzoic acid efflux pump subunit AaeB identified by similarity to SP:P46481%3B match to protein family HMM PF04632 gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0421 YpsIP31758_0422 YpsIP31758_0422 gabD gabD 500065 501534 + succinate-semialdehyde dehydrogenase (NADP+) identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01780 gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0422 YpsIP31758_0423 YpsIP31758_0423 YpsIP31758_0423 501729 502202 + ribonuclease Ba identified by similarity to SP:P00648%3B match to protein family HMM PF00545 gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0423 YpsIP31758_0424 YpsIP31758_0424 YpsIP31758_0424 502207 502488 + barstar identified by match to protein family HMM PF01337 gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0424 YpsIP31758_0425 YpsIP31758_0425 YpsIP31758_0425 502584 503132 - conserved hypothetical protein identified by similarity to GB:AAS63999.1%3B match to protein family HMM PF04751 gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0425 YpsIP31758_0426 YpsIP31758_0426 pmbA pmbA 503311 504651 + pmbA protein Probable peptidase required for the maturation and secretion of the antibiotic peptide MccB17. EcoGene10741%3B identified by similarity to SP:P24231%3B match to protein family HMM PF01523 gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0426 YpsIP31758_0427 YpsIP31758_0427 YpsIP31758_0427 504775 505419 + conserved hypothetical protein identified by similarity to GB:CAC93161.1 gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0427 YpsIP31758_0428 YpsIP31758_0428 YpsIP31758_0428 505627 506013 + cytochrome b562 identified by match to protein family HMM PF07361 gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0428 YpsIP31758_0429 YpsIP31758_0429 rnk rnk 506237 506647 - regulator of nucleoside diphosphate kinase identified by similarity to SP:P40679 gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0429 YpsIP31758_0430 YpsIP31758_0430 treC treC 507000 508667 - alpha%2Calpha-phosphotrehalase a.k.a trehalose-6-phosphate hydrolase - DMH%3B identified by similarity to SP:P28904%3B match to protein family HMM PF00128%3B match to protein family HMM TIGR02403 gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0430 YpsIP31758_0431 YpsIP31758_0431 treB treB 508778 510193 - pts system%2C trehalose-specific IIBC component identified by similarity to SP:P36672%3B match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR01992 gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0431 YpsIP31758_0432 YpsIP31758_0432 treR treR 510604 511557 - trehalose operon repressor identified by similarity to SP:P36673%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532%3B match to protein family HMM TIGR02405 gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0432 YpsIP31758_0433 YpsIP31758_0433 YpsIP31758_0433 511791 512267 - conserved hypothetical protein gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0433 YpsIP31758_0434 YpsIP31758_0434 YpsIP31758_0434 512566 512952 - putative endoribonuclease L-PSP identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004 gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0434 YpsIP31758_0435 YpsIP31758_0435 pyrI pyrI 513090 513554 - aspartate carbamoyltransferase%2C regulatory subunit identified by match to protein family HMM PF01948%3B match to protein family HMM PF02748%3B match to protein family HMM TIGR00240 gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0435 YpsIP31758_0436 YpsIP31758_0436 pyrB pyrB 513566 514501 - aspartate carbamoyltransferase identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00670 gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0436 YpsIP31758_0437 YpsIP31758_0437 YpsIP31758_0437 514839 515111 - phosphocarrier protein%2C HPr family identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0437 YpsIP31758_0438 YpsIP31758_0438 YpsIP31758_0438 515108 515962 - P-loop ATPase protein family identified by match to protein family HMM PF03668 gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0438 YpsIP31758_0439 YpsIP31758_0439 ptsN ptsN 516268 516750 - nitrogen regulatory IIA protein identified by similarity to SP:P69829%3B match to protein family HMM PF00359%3B match to protein family HMM TIGR01419 gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0439 YpsIP31758_0440 YpsIP31758_0440 YpsIP31758_0440 516868 517155 - ribosomal subunit interface protein identified by match to protein family HMM PF02482%3B match to protein family HMM TIGR00741 gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0440 YpsIP31758_0441 YpsIP31758_0441 rpoN rpoN 517179 518612 - RNA polymerase sigma-54 factor identified by similarity to SP:P24255%3B match to protein family HMM PF00309%3B match to protein family HMM PF04552%3B match to protein family HMM PF04963%3B match to protein family HMM TIGR02395 gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0441 YpsIP31758_0442 YpsIP31758_0442 YpsIP31758_0442 518674 519399 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0442 YpsIP31758_0443 YpsIP31758_0443 yhbN yhbN 519406 519951 - cell envelope biogenesis protein YhbN identified by match to protein family HMM PF03968%3B match to protein family HMM TIGR03002 gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0443 YpsIP31758_0444 YpsIP31758_0444 YpsIP31758_0444 519935 520498 - conserved hypothetical protein identified by match to protein family HMM PF06835 gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0444 YpsIP31758_0445 YpsIP31758_0445 kdsC kdsC 520495 521058 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase identified by similarity to SP:P0ABZ4%3B match to protein family HMM TIGR01662%3B match to protein family HMM TIGR01670 gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0445 YpsIP31758_0446 YpsIP31758_0446 kdsD kdsD 521468 522454 - arabinose 5-phosphate isomerase identified by similarity to SP:P45395%3B match to protein family HMM PF00571%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR00393 gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0446 YpsIP31758_0447 YpsIP31758_0447 YpsIP31758_0447 522565 523539 - Sodium/calcium exchanger protein YrbG identified by similarity to SP:P45394%3B match to protein family HMM PF01699%3B match to protein family HMM TIGR00367 gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0447 YpsIP31758_0448 YpsIP31758_0448 YpsIP31758_0448 523804 524622 + putative ABC transporter%2C ATP-binding protein YrbF identified by similarity to SP:P63386%3B match to protein family HMM PF00005 gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0448 YpsIP31758_0449 YpsIP31758_0449 YpsIP31758_0449 524840 525622 + putative ABC transporter%2C permease protein YrbE identified by similarity to SP:P64609%3B match to protein family HMM PF02405%3B match to protein family HMM TIGR00056 gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0449 YpsIP31758_0450 YpsIP31758_0450 YpsIP31758_0450 525627 526184 + mce family protein identified by match to protein family HMM PF02470 gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0450 YpsIP31758_0451 YpsIP31758_0451 ttg2D ttg2D 526197 526820 + toluene tolerance protein Ttg2D identified by match to protein family HMM PF05494 gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0451 YpsIP31758_0452 YpsIP31758_0452 YpsIP31758_0452 526856 527158 + putative anti-anti-sigma factor identified by match to protein family HMM PF01740 gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0452 YpsIP31758_0453 YpsIP31758_0453 YpsIP31758_0453 527305 527559 + putative BolA protein identified by match to protein family HMM PF01722 gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0453 YpsIP31758_0454 YpsIP31758_0454 murA murA 527713 528975 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01072 gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0454 YpsIP31758_0455 YpsIP31758_0455 degS degS 529156 530244 - periplasmic serine peptidase DegS identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02038 gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0455 YpsIP31758_0456 YpsIP31758_0456 degQ degQ 530334 531707 - protease DegQ identified by similarity to SP:P39099%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037 gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0456 YpsIP31758_0457 YpsIP31758_0457 YpsIP31758_0457 531978 532382 - conserved hypothetical protein identified by similarity to GB:CAG73224.1%3B match to protein family HMM PF06295 gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0457 YpsIP31758_0458 YpsIP31758_0458 YpsIP31758_0458 532606 533733 + ATPase%2C AFG1 family protein identified by match to protein family HMM PF03969 gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0458 YpsIP31758_0459 YpsIP31758_0459 rplM rplM 534047 534475 + ribosomal protein L13 identified by match to protein family HMM PF00572%3B match to protein family HMM TIGR01066 gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0459 YpsIP31758_0460 YpsIP31758_0460 YpsIP31758_0460 534879 535076 - hypothetical protein identified by glimmer%3B putative gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0460 YpsIP31758_0461 YpsIP31758_0461 rpsI rpsI 534490 534882 + ribosomal protein S9 identified by match to protein family HMM PF00380 gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0461 YpsIP31758_0462 YpsIP31758_0462 sspA sspA 535256 535897 + stringent starvation protein A identified by similarity to SP:P0ACA6%3B match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0462 YpsIP31758_0463 YpsIP31758_0463 sspB sspB 535903 536418 + stringent starvation protein B identified by similarity to SP:P25663%3B match to protein family HMM PF04386 gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0463 YpsIP31758_0464 YpsIP31758_0464 YpsIP31758_0464 536571 537056 - conserved hypothetical protein gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0464 YpsIP31758_0465 YpsIP31758_0465 gltD gltD 537656 539074 - glutamate synthase%2C small subunit identified by similarity to SP:P09832%3B match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01318 gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0465 YpsIP31758_0466 YpsIP31758_0466 gltB gltB 539084 543541 - glutamate synthase%2C large subunit identified by similarity to SP:P09831%3B match to protein family HMM PF00310%3B match to protein family HMM PF01493%3B match to protein family HMM PF01645%3B match to protein family HMM PF04898 gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0466 YpsIP31758_0467 YpsIP31758_0467 YpsIP31758_0467 544105 544224 + hypothetical protein identified by glimmer%3B putative gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0467 YpsIP31758_0468 YpsIP31758_0468 YpsIP31758_0468 544363 545286 + radical SAM protein%2C TIGR01212 family identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR01212 gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0468 YpsIP31758_0469 YpsIP31758_0469 YpsIP31758_0469 545570 547906 + putative aerobic respiration control sensor protein ArcB identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0469 YpsIP31758_0470 YpsIP31758_0470 elbB elbB 548148 548801 + enhancing lycopene biosynthesis protein 2 identified by similarity to SP:P0ABU5%3B match to protein family HMM PF01965 gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0470 YpsIP31758_0471 YpsIP31758_0471 mtgA mtgA 548798 549523 + monofunctional biosynthetic peptidoglycan transglycosylase identified by match to protein family HMM PF00912%3B match to protein family HMM TIGR02070 gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0471 YpsIP31758_0472 YpsIP31758_0472 YpsIP31758_0472 549730 550305 - putative YraP protein identified by match to protein family HMM PF04972 gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0472 YpsIP31758_0473 YpsIP31758_0473 gmhA2 gmhA2 550316 550906 - phosphoheptose isomerase identified by match to protein family HMM TIGR00441 gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0473 YpsIP31758_0474 YpsIP31758_0474 YpsIP31758_0474 551177 551530 - conserved hypothetical protein identified by similarity to SP:Q8ZB75%3B match to protein family HMM PF02021%3B match to protein family HMM TIGR00252 gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0474 YpsIP31758_0475 YpsIP31758_0475 YpsIP31758_0475 551629 553698 - putative LppC lipoprotein identified by match to protein family HMM PF04348 gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0475 YpsIP31758_0476 YpsIP31758_0476 YpsIP31758_0476 553665 554564 + putative tetrapyrrole methylase identified by similarity to SP:P67087%3B match to protein family HMM PF00590%3B match to protein family HMM TIGR00096 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0476 YpsIP31758_0477 YpsIP31758_0477 YpsIP31758_0477 555162 555866 - YhhW family protein identified by match to protein family HMM PF02678 gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0477 YpsIP31758_0478 YpsIP31758_0478 YpsIP31758_0478 556128 557021 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0478 YpsIP31758_0479 YpsIP31758_0479 YpsIP31758_0479 557152 558138 - glutathione S-transferase domain protein identified by match to protein family HMM PF00043 gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0479 YpsIP31758_0480 YpsIP31758_0480 YpsIP31758_0480 558224 558619 - DoxX family protein identified by match to protein family HMM PF07681 gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0480 YpsIP31758_0481 YpsIP31758_0481 YpsIP31758_0481 558923 559207 - conserved hypothetical protein identified by similarity to GB:CAC89425.1 gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0481 YpsIP31758_0482 YpsIP31758_0482 YpsIP31758_0482 559204 559599 - conserved hypothetical protein identified by similarity to GB:CAH22724.1 gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0482 YpsIP31758_0483 YpsIP31758_0483 YpsIP31758_0483 559602 559907 - conserved hypothetical protein identified by similarity to GB:CAG73554.1%3B match to protein family HMM PF05957 gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0483 YpsIP31758_0484 YpsIP31758_0484 YpsIP31758_0484 559912 560058 - hypothetical protein identified by glimmer%3B putative gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0484 YpsIP31758_0485 YpsIP31758_0485 YpsIP31758_0485 560062 560442 - conserved hypothetical protein identified by similarity to GB:AAS63074.1%3B match to protein family HMM PF06476 gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0485 YpsIP31758_0486 YpsIP31758_0486 YpsIP31758_0486 560668 561057 - conserved hypothetical protein identified by similarity to GB:AAN82299.1 gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0486 YpsIP31758_0487 YpsIP31758_0487 YpsIP31758_0487 561054 561752 - putative membrane protein gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0487 YpsIP31758_0488 YpsIP31758_0488 YpsIP31758_0488 562030 562611 - hypothetical protein identified by glimmer%3B putative gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0488 YpsIP31758_0489 YpsIP31758_0489 YpsIP31758_0489 562812 563606 - transcriptional regulator%2C GntR family identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0489 YpsIP31758_0490 YpsIP31758_0490 YpsIP31758_0490 563869 565170 - putative hexuronate MFS transporter ExuT identified by similarity to SP:P0AA78%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00893 gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0490 YpsIP31758_0491 YpsIP31758_0491 uxaC uxaC 565918 567327 + glucuronate isomerase identified by match to protein family HMM PF02614 gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0491 YpsIP31758_0492 YpsIP31758_0492 uxaB uxaB 567526 568977 + altronate oxidoreductase identified by similarity to SP:P0A6L7%3B match to protein family HMM PF01232%3B match to protein family HMM PF08125 gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0492 YpsIP31758_0493 YpsIP31758_0493 uxaA uxaA 568988 570478 + altronate dehydratase identified by similarity to SP:P42604%3B match to protein family HMM PF04292%3B match to protein family HMM PF04295 gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0493 YpsIP31758_0494 YpsIP31758_0494 YpsIP31758_0494 570631 571161 + putative membrane protein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0494 YpsIP31758_0495 YpsIP31758_0495 sstT sstT 571228 572484 - sodium/serine (threonine) transporter identified by similarity to SP:P0AGE4%3B match to protein family HMM PF00375 gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0495 YpsIP31758_0496 YpsIP31758_0496 YpsIP31758_0496 572787 573296 + IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0496 YpsIP31758_0497 YpsIP31758_0497 YpsIP31758_0497 573730 574725 - oxidoreductase%2C Gfo/Idh/MocA family identified by similarity to SP:P42599%3B match to protein family HMM PF01408 gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0497 YpsIP31758_0498 YpsIP31758_0498 YpsIP31758_0498 574928 575437 - conserved hypothetical protein identified by match to protein family HMM PF01863 gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0498 YpsIP31758_0499 YpsIP31758_0499 YpsIP31758_0499 575710 578724 - putative autotransporter protein identified by match to protein family HMM PF03212%3B match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0499 YpsIP31758_0500 YpsIP31758_0500 YpsIP31758_0500 579199 580386 + methyltransferase family protein identified by match to protein family HMM PF05175 gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0500 YpsIP31758_0501 YpsIP31758_0501 fadH fadH 580502 582523 - 2%2C4-dienoyl-coa reductase identified by similarity to SP:P42593%3B match to protein family HMM PF00070%3B match to protein family HMM PF00724%3B match to protein family HMM PF07992 gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0501 YpsIP31758_0502 YpsIP31758_0502 YpsIP31758_0502 582736 583305 - putative membrane protein gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0502 YpsIP31758_0503 YpsIP31758_0503 YpsIP31758_0503 583696 585195 - putative protein kinase identified by match to protein family HMM PF00069 gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0503 YpsIP31758_0504 YpsIP31758_0504 YpsIP31758_0504 585227 586960 - conserved hypothetical protein identified by similarity to GB:CAC89450.1 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0504 YpsIP31758_0505 YpsIP31758_0505 YpsIP31758_0505 586960 588000 - putative tellurium resistance protein identified by similarity to GB:AAC44737.1%3B match to protein family HMM PF00092 gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0505 YpsIP31758_0506 YpsIP31758_0506 YpsIP31758_0506 588102 588740 - putative tellurium resistance protein identified by similarity to GB:AAC44737.1%3B match to protein family HMM PF00092 gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0506 YpsIP31758_0507 YpsIP31758_0507 YpsIP31758_0507 588742 589383 - tellurium resistance protein identified by similarity to SP:P75012%3B match to protein family HMM PF02342 gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0507 YpsIP31758_0508 YpsIP31758_0508 YpsIP31758_0508 589416 590054 - putative tellurium resistance protein identified by similarity to GB:AAC44737.1%3B match to protein family HMM PF00092 gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0508 YpsIP31758_0509 YpsIP31758_0509 YpsIP31758_0509 590769 592457 + haemolysin secretion/activation protein%2C ShlB/FhaC/HecB family identified by match to protein family HMM PF03865 gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0509 YpsIP31758_0510 YpsIP31758_0510 YpsIP31758_0510 592502 602554 + adhesin/haemagluttinin repeat protein identified by match to protein family HMM PF05594%3B match to protein family HMM PF05860%3B match to protein family HMM TIGR01731%3B match to protein family HMM TIGR01901 gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0510 YpsIP31758_0511 YpsIP31758_0511 YpsIP31758_0511 602904 603032 + hypothetical protein identified by glimmer%3B putative gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0511 YpsIP31758_0512 YpsIP31758_0512 YpsIP31758_0512 603192 603509 + hypothetical protein identified by glimmer%3B putative gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0512 YpsIP31758_0513 YpsIP31758_0513 YpsIP31758_0513 603514 603762 + hypothetical protein identified by glimmer%3B putative gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0513 YpsIP31758_0514 YpsIP31758_0514 YpsIP31758_0514 603786 607592 + conserved hypothetical protein identified by similarity to GB:CAC89456.1 gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0514 YpsIP31758_0515 YpsIP31758_0515 YpsIP31758_0515 607589 608065 + conserved hypothetical protein identified by similarity to GB:CAB71950.1 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0515 YpsIP31758_0516 YpsIP31758_0516 YpsIP31758_0516 608102 608233 + hypothetical protein identified by glimmer%3B putative gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0516 YpsIP31758_0517 YpsIP31758_0517 YpsIP31758_0517 608410 609021 + hypothetical protein identified by glimmer%3B putative gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0517 YpsIP31758_0518 YpsIP31758_0518 YpsIP31758_0518 609436 610098 + conserved domain protein gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0518 YpsIP31758_0519 YpsIP31758_0519 YpsIP31758_0519 610759 612681 + conserved domain protein identified by similarity to GB:CAC89456.1 gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0519 YpsIP31758_0520 YpsIP31758_0520 YpsIP31758_0520 612687 613076 + conserved hypothetical protein identified by similarity to GB:CAG67844.1 gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0520 YpsIP31758_0521 YpsIP31758_0521 YpsIP31758_0521 613357 614595 + conserved domain protein identified by similarity to GB:CAC89456.1 gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0521 YpsIP31758_0522 YpsIP31758_0522 YpsIP31758_0522 614846 617131 - putative autotransporter protein identified by match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0522 YpsIP31758_0523 YpsIP31758_0523 YpsIP31758_0523 617191 618186 - hypothetical protein identified by glimmer%3B putative gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0523 YpsIP31758_0524 YpsIP31758_0524 YpsIP31758_0524 618288 619667 - conserved hypothetical protein gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0524 YpsIP31758_0525 YpsIP31758_0525 YpsIP31758_0525 619993 621108 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459 gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0525 YpsIP31758_0526 YpsIP31758_0526 YpsIP31758_0526 621191 624544 + conserved hypothetical protein gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0526 YpsIP31758_0527 YpsIP31758_0527 YpsIP31758_0527 624653 625639 + sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0527 YpsIP31758_0528 YpsIP31758_0528 YpsIP31758_0528 625716 626960 + sugar ABC transporter%2C periplasmic sugar-binding protein identified by match to protein family HMM PF01547 gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0528 YpsIP31758_0529 YpsIP31758_0529 YpsIP31758_0529 627014 627895 + sugar ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0529 YpsIP31758_0530 YpsIP31758_0530 YpsIP31758_0530 627895 628713 + sugar ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0530 YpsIP31758_0531 YpsIP31758_0531 YpsIP31758_0531 628710 629225 + hypothetical protein identified by glimmer%3B putative gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0531 YpsIP31758_0532 YpsIP31758_0532 YpsIP31758_0532 629276 631459 + putative periplasmic beta-glucosidase identified by similarity to SP:P33363%3B match to protein family HMM PF00933%3B match to protein family HMM PF01915 gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0532 YpsIP31758_0533 YpsIP31758_0533 YpsIP31758_0533 631523 632884 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0533 YpsIP31758_0534 YpsIP31758_0534 YpsIP31758_0534 633054 634955 - Fusaric acid resistance domain protein identified by match to protein family HMM PF04632 gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0534 YpsIP31758_0535 YpsIP31758_0535 YpsIP31758_0535 634939 635988 - auxiliary transport protein%2C membrane fusion protein family identified by similarity to SP:P32716%3B match to protein family HMM PF00529 gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0535 YpsIP31758_0536 YpsIP31758_0536 YpsIP31758_0536 635998 636324 - putative membrane protein gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0536 YpsIP31758_0537 YpsIP31758_0537 YpsIP31758_0537 636330 636530 - hypothetical protein identified by glimmer%3B putative gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0537 YpsIP31758_0538 YpsIP31758_0538 YpsIP31758_0538 637317 638528 + putative aspartate aminotransferase identified by similarity to SP:Q9V0L2%3B match to protein family HMM PF00155 gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0538 YpsIP31758_0539 YpsIP31758_0539 YpsIP31758_0539 638521 639972 + Na+/H+ antiporter family protein identified by match to protein family HMM PF03553%3B match to protein family HMM PF03600 gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0539 YpsIP31758_0540 YpsIP31758_0540 YpsIP31758_0540 639985 640422 + conserved hypothetical protein identified by similarity to GB:AAU46929.1 gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0540 YpsIP31758_0541 YpsIP31758_0541 YpsIP31758_0541 640556 641188 + conserved hypothetical protein identified by similarity to GB:AAS96679.1 gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0541 YpsIP31758_0542 YpsIP31758_0542 YpsIP31758_0542 641199 641579 + putative endoribonuclease L-PSP identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004 gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0542 YpsIP31758_0543 YpsIP31758_0543 YpsIP31758_0543 641864 642268 + endoribonuclease%2C L-PSP family identified by match to protein family HMM PF01042 gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0543 YpsIP31758_0544 YpsIP31758_0544 YpsIP31758_0544 642483 642785 - putative monooxygenase%2C YdhR identified by similarity to SP:P0ACX4 gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0544 YpsIP31758_0545 YpsIP31758_0545 YpsIP31758_0545 643045 643647 - conserved hypothetical protein identified by similarity to RF:NP_994251.1 gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0545 YpsIP31758_0546 YpsIP31758_0546 YpsIP31758_0546 643712 643837 + hypothetical protein identified by glimmer%3B putative gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0546 YpsIP31758_0547 YpsIP31758_0547 YpsIP31758_0547 643923 644879 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0547 YpsIP31758_0548 YpsIP31758_0548 YpsIP31758_0548 645306 645863 + Fic family protein identified by similarity to SP:P20605%3B match to protein family HMM PF02661 gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0548 YpsIP31758_0549 YpsIP31758_0549 YpsIP31758_0549 646198 647376 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0549 YpsIP31758_0550 YpsIP31758_0550 YpsIP31758_0550 647385 647915 + hypothetical protein identified by glimmer%3B putative gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0550 YpsIP31758_0551 YpsIP31758_0551 YpsIP31758_0551 647929 648402 + hypothetical protein identified by glimmer%3B putative gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0551 YpsIP31758_0552 YpsIP31758_0552 YpsIP31758_0552 648718 649056 + hypothetical protein identified by glimmer%3B putative gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0552 YpsIP31758_0553 YpsIP31758_0553 rpoD rpoD 649574 651412 - RNA polymerase sigma factor RpoD identified by match to protein family HMM PF00140%3B match to protein family HMM PF03979%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF04546%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0553 YpsIP31758_0554 YpsIP31758_0554 dnaG dnaG 651570 653318 - DNA primase identified by similarity to SP:P0ABS5%3B match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM TIGR01391 gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0554 YpsIP31758_0555 YpsIP31758_0555 rpsU rpsU 653454 653669 - ribosomal protein S21 identified by match to protein family HMM PF01165%3B match to protein family HMM TIGR00030 gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0555 YpsIP31758_0556 YpsIP31758_0556 gcp gcp 654075 655088 + O-sialoglycoprotein endopeptidase identified by similarity to SP:P36175%3B match to protein family HMM PF00814%3B match to protein family HMM TIGR00329 gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0556 YpsIP31758_0557 YpsIP31758_0557 YpsIP31758_0557 655334 655984 - putative membrane protein identified by similarity to SP:P67161%3B match to protein family HMM PF02660%3B match to protein family HMM TIGR00023 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0557 YpsIP31758_0558 YpsIP31758_0558 folB folB 656092 656451 + dihydroneopterin aldolase identified by similarity to SP:P0AC16%3B match to protein family HMM PF02152%3B match to protein family HMM TIGR00525%3B match to protein family HMM TIGR00526 gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0558 YpsIP31758_0559 YpsIP31758_0559 uppP uppP 656725 657543 + undecaprenyl-diphosphatase identified by similarity to SP:P60932%3B match to protein family HMM PF02673%3B match to protein family HMM TIGR00753 gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0559 YpsIP31758_0560 YpsIP31758_0560 cca cca 657779 659017 - multifunctional CCA protein identified by similarity to SP:P06961%3B match to protein family HMM PF01743%3B match to protein family HMM PF01966 gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0560 YpsIP31758_0561 YpsIP31758_0561 YpsIP31758_0561 659195 659815 - conserved hypothetical protein gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0561 YpsIP31758_0562 YpsIP31758_0562 YpsIP31758_0562 660119 661426 + adenylate cyclase identified by match to protein family HMM PF01928%3B match to protein family HMM PF05235 gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0562 YpsIP31758_0563 YpsIP31758_0563 glnE glnE 661598 664453 + glutamate-ammonia-ligase adenylyltransferase identified by similarity to SP:P30870%3B match to protein family HMM PF03710 gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0563 YpsIP31758_0564 YpsIP31758_0564 hldE hldE 664588 666018 + bifunctional protein HldE identified by similarity to SP:P76658%3B match to protein family HMM PF00294%3B match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR02198%3B match to protein family HMM TIGR02199 gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0564 YpsIP31758_0565 YpsIP31758_0565 YpsIP31758_0565 666055 667305 + amino acid permease family protein identified by match to protein family HMM PF00324 gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0565 YpsIP31758_0566 YpsIP31758_0566 YpsIP31758_0566 667630 667911 - conserved hypothetical protein identified by similarity to GB:CAH22643.1%3B match to protein family HMM PF04380 gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0566 YpsIP31758_0567 YpsIP31758_0567 ribB ribB 668481 669134 + 3%2C4-dihydroxy-2-butanone 4-phosphate synthase identified by match to protein family HMM PF00926%3B match to protein family HMM TIGR00506 gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0567 YpsIP31758_0568 YpsIP31758_0568 YpsIP31758_0568 669260 669373 + hypothetical protein identified by glimmer%3B putative gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0568 YpsIP31758_0569 YpsIP31758_0569 YpsIP31758_0569 669401 669538 + hypothetical protein identified by glimmer%3B putative gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0569 YpsIP31758_0570 YpsIP31758_0570 YpsIP31758_0570 669576 670358 + extradiol ring-cleavage dioxygenase family protein identified by match to protein family HMM PF02900 gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0570 YpsIP31758_0571 YpsIP31758_0571 YpsIP31758_0571 670765 671925 - putative glutathionylspermidine synthase identified by match to protein family HMM PF03738 gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0571 YpsIP31758_0572 YpsIP31758_0572 YpsIP31758_0572 671935 672621 - conserved hypothetical protein identified by similarity to GB:CAH22639.1 gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0572 YpsIP31758_0573 YpsIP31758_0573 YpsIP31758_0573 672922 674316 - type I secretion outer membrane protein%2C TolC family identified by similarity to SP:P02930%3B match to protein family HMM PF02321%3B match to protein family HMM TIGR01844 gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0573 YpsIP31758_0574 YpsIP31758_0574 YpsIP31758_0574 674712 675344 + hydrolase%2C NUDIX family identified by match to protein family HMM PF00293%3B match to protein family HMM TIGR00052 gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0574 YpsIP31758_0575 YpsIP31758_0575 YpsIP31758_0575 675378 675803 + conserved hypothetical protein identified by similarity to GB:CAH22636.1%3B match to protein family HMM PF06853 gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0575 YpsIP31758_0576 YpsIP31758_0576 YpsIP31758_0576 675884 676711 + Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0576 YpsIP31758_0577 YpsIP31758_0577 yqiA yqiA 676711 677292 + esterase YqiA identified by similarity to SP:P0A8Z7%3B match to protein family HMM PF05728 gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0577 YpsIP31758_0578 YpsIP31758_0578 parE parE 677394 679289 + DNA topoisomerase IV%2C B subunit identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01055 gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0578 YpsIP31758_0579 YpsIP31758_0579 YpsIP31758_0579 679293 680204 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0579 YpsIP31758_0580 YpsIP31758_0580 YpsIP31758_0580 680262 680846 - putative NADH-quinone reductase mdaB identified by similarity to SP:P40717%3B match to protein family HMM PF02525 gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0580 YpsIP31758_0581 YpsIP31758_0581 parC parC 681150 683423 + DNA topoisomerase IV%2C A subunit identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01062 gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0581 YpsIP31758_0582 YpsIP31758_0582 YpsIP31758_0582 683712 684443 + 1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553%3B match to protein family HMM TIGR00530 gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0582 YpsIP31758_0583 YpsIP31758_0583 YpsIP31758_0583 684622 686046 + SufI protein identified by similarity to SP:P26648%3B match to protein family HMM PF07731%3B match to protein family HMM PF07732%3B match to protein family HMM TIGR01409 gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0583 YpsIP31758_0584 YpsIP31758_0584 YpsIP31758_0584 686324 686872 - hypothetical protein identified by glimmer%3B putative gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0584 YpsIP31758_0585 YpsIP31758_0585 YpsIP31758_0585 687316 689679 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0585 YpsIP31758_0586 YpsIP31758_0586 dkgA dkgA 689701 690528 - 2%2C5-diketo-D-gluconic acid reductase A identified by similarity to SP:Q46857%3B match to protein family HMM PF00248 gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0586 YpsIP31758_0587 YpsIP31758_0587 YpsIP31758_0587 690953 692110 - alcohol dehydrogenase%2C iron-containing identified by match to protein family HMM PF00465 gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0587 YpsIP31758_0588 YpsIP31758_0588 YpsIP31758_0588 692508 693401 + transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165%3B match to protein family HMM PF06719 gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0588 YpsIP31758_0589 YpsIP31758_0589 YpsIP31758_0589 693493 694155 - putative membrane protein gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0589 YpsIP31758_0590 YpsIP31758_0590 metC1 metC1 694348 695559 - cystathionine beta-lyase identified by match to protein family HMM PF01053%3B match to protein family HMM TIGR01324 gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0590 YpsIP31758_0591 YpsIP31758_0591 exbB exbB 696416 697129 + tonB-system energizer ExbB identified by match to protein family HMM PF01618%3B match to protein family HMM TIGR02797 gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0591 YpsIP31758_0592 YpsIP31758_0592 exbD exbD 697133 697564 + tonB system transport protein ExbD identified by match to protein family HMM PF02472%3B match to protein family HMM TIGR02803 gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0592 YpsIP31758_0593 YpsIP31758_0593 YpsIP31758_0593 697661 699217 - conserved hypothetical protein identified by similarity to GB:BAC96628.1 gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0593 YpsIP31758_0594 YpsIP31758_0594 YpsIP31758_0594 699242 699814 - hypothetical protein identified by glimmer%3B putative gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0594 YpsIP31758_0595 YpsIP31758_0595 YpsIP31758_0595 699798 700268 - TadE-like family protein identified by match to protein family HMM PF07811 gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0595 YpsIP31758_0596 YpsIP31758_0596 YpsIP31758_0596 700268 701038 - putative lipoprotein gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0596 YpsIP31758_0597 YpsIP31758_0597 YpsIP31758_0597 701022 701855 - type II secretion system protein identified by similarity to GB:AAN75213.1%3B match to protein family HMM PF00482 gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0597 YpsIP31758_0598 YpsIP31758_0598 YpsIP31758_0598 701852 702727 - type II secretion system protein F domain protein identified by match to protein family HMM PF00482 gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0598 YpsIP31758_0599 YpsIP31758_0599 YpsIP31758_0599 702724 704010 - type II/IV secretion system protein identified by similarity to GB:AAD38172.2%3B match to protein family HMM PF00437 gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0599 YpsIP31758_0600 YpsIP31758_0600 YpsIP31758_0600 704022 705149 - conserved hypothetical protein identified by similarity to GB:AAP43987.1 gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0600 YpsIP31758_0601 YpsIP31758_0601 YpsIP31758_0601 705447 706766 - type II/III secretion system protein identified by match to protein family HMM PF00263 gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0601 YpsIP31758_0602 YpsIP31758_0602 YpsIP31758_0602 706763 707584 - conserved hypothetical protein identified by similarity to GB:AAW85007.1 gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0602 YpsIP31758_0603 YpsIP31758_0603 YpsIP31758_0603 707636 708034 - type IV prepilin peptidase family identified by match to protein family HMM PF01478 gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0603 YpsIP31758_0604 YpsIP31758_0604 YpsIP31758_0604 708122 708319 - putative membrane protein gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0604 YpsIP31758_0605 YpsIP31758_0605 YpsIP31758_0605 708541 709128 - conserved hypothetical protein identified by similarity to GB:AAP18303.1 gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0605 YpsIP31758_0606 YpsIP31758_0606 YpsIP31758_0606 709705 709869 - hypothetical protein identified by glimmer%3B putative gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0606 YpsIP31758_0607 YpsIP31758_0607 cusA cusA 709883 710002 - pseudogene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0607 YpsIP31758_0608 YpsIP31758_0608 YpsIP31758_0608 710853 719240 + putative invasin identified by similarity to SP:P11922%3B match to protein family HMM PF01476%3B match to protein family HMM PF02369 gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0608 YpsIP31758_0609 YpsIP31758_0609 YpsIP31758_0609 719627 719776 - hypothetical protein identified by glimmer%3B putative gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0609 YpsIP31758_0610 YpsIP31758_0610 YpsIP31758_0610 719838 721232 - fibronectin type III domain protein/ chitin binding domain protein identified by match to protein family HMM PF00041%3B match to protein family HMM PF02839%3B match to protein family HMM PF03067 gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0610 YpsIP31758_0611 YpsIP31758_0611 YpsIP31758_0611 721297 722712 - glycosyl hydrolase%2C family 18 identified by match to protein family HMM PF00041%3B match to protein family HMM PF00704 gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0611 YpsIP31758_0612 YpsIP31758_0612 YpsIP31758_0612 723612 723773 - hypothetical protein identified by glimmer%3B putative gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0612 YpsIP31758_0613 YpsIP31758_0613 YpsIP31758_0613 723871 724401 + fimbrial protein identified by match to protein family HMM PF00419 gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0613 YpsIP31758_0614 YpsIP31758_0614 YpsIP31758_0614 724708 727188 + fimbrial usher protein identified by match to protein family HMM PF00577 gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0614 YpsIP31758_0615 YpsIP31758_0615 papD papD 727206 727925 + chaperone protein PapD identified by similarity to SP:P15319%3B match to protein family HMM PF00345%3B match to protein family HMM PF02753 gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0615 YpsIP31758_0616 YpsIP31758_0616 YpsIP31758_0616 727950 729053 + fimbrial family protein identified by match to protein family HMM PF00419 gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0616 YpsIP31758_0617 YpsIP31758_0617 YpsIP31758_0617 729265 730344 - ferrienterobactin-binding periplasmic protein identified by similarity to SP:P0AEL6%3B match to protein family HMM PF01497 gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0617 YpsIP31758_0618 YpsIP31758_0618 YpsIP31758_0618 730828 730959 - hypothetical protein identified by glimmer%3B putative gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0618 YpsIP31758_0619 YpsIP31758_0619 YpsIP31758_0619 731200 732195 + conserved hypothetical protein gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0619 YpsIP31758_0620 YpsIP31758_0620 YpsIP31758_0620 732287 732865 - putative lipoprotein identified by similarity to GB:AAS63192.1 gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0620 YpsIP31758_0621 YpsIP31758_0621 YpsIP31758_0621 732868 732990 + hypothetical protein identified by glimmer%3B putative gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0621 YpsIP31758_0622 YpsIP31758_0622 flhA2 flhA2 733059 735155 - flagellar biosynthesis protein FlhA identified by match to protein family HMM PF00771 gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0622 YpsIP31758_0623 YpsIP31758_0623 flhB2 flhB2 735142 736275 - flagellar biosynthetic protein FlhB identified by similarity to SP:P76299%3B match to protein family HMM PF01312%3B match to protein family HMM TIGR00328 gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0623 YpsIP31758_0624 YpsIP31758_0624 fliR2 fliR2 736275 737048 - flagellar biosynthetic protein FliR identified by similarity to SP:P33135%3B match to protein family HMM PF01311%3B match to protein family HMM TIGR01400 gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0624 YpsIP31758_0625 YpsIP31758_0625 fliQ2 fliQ2 737055 737327 - flagellar biosynthetic protein FliQ identified by similarity to SP:P35535%3B match to protein family HMM PF01313%3B match to protein family HMM TIGR01402 gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0625 YpsIP31758_0626 YpsIP31758_0626 fliP1 fliP1 737329 738099 - flagellar biosynthetic protein FliP identified by match to protein family HMM PF00813%3B match to protein family HMM TIGR01103 gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0626 YpsIP31758_0627 YpsIP31758_0627 fliN2 fliN2 738096 738509 - flagellar motor switch protein FliN identified by match to protein family HMM PF01052%3B match to protein family HMM TIGR02480 gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0627 YpsIP31758_0628 YpsIP31758_0628 YpsIP31758_0628 738502 739380 - lateral flagellar export/assembly protein identified by similarity to GB:CAH19119.1 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0628 YpsIP31758_0629 YpsIP31758_0629 YpsIP31758_0629 739894 740922 + sigma-54 dependent transcriptional regulator identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0629 YpsIP31758_0630 YpsIP31758_0630 fliE2 fliE2 740939 741319 + flagellar hook-basal body complex protein FliE identified by match to protein family HMM PF02049%3B match to protein family HMM TIGR00205 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0630 YpsIP31758_0631 YpsIP31758_0631 fliF2 fliF2 741329 742969 + flagellar M-ring protein FliF identified by similarity to SP:P25798%3B match to protein family HMM PF01514%3B match to protein family HMM TIGR00206 gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0631 YpsIP31758_0632 YpsIP31758_0632 fliG2 fliG2 742941 743984 + flagellar motor switch protein FliG identified by match to protein family HMM PF01706 gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0632 YpsIP31758_0633 YpsIP31758_0633 fliH1 fliH1 743989 744705 + flagellar assembly protein FliH identified by similarity to SP:P31068%3B match to protein family HMM PF02108 gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0633 YpsIP31758_0634 YpsIP31758_0634 fliI2 fliI2 744698 746038 + flagellum-specific ATP synthase identified by similarity to SP:P52612%3B match to protein family HMM PF00006%3B match to protein family HMM TIGR01026 gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0634 YpsIP31758_0635 YpsIP31758_0635 fliJ2 fliJ2 746042 746479 + flagellar export protein FliJ identified by match to protein family HMM TIGR02473 gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0635 YpsIP31758_0636 YpsIP31758_0636 YpsIP31758_0636 746749 747174 - putative flagellar protein FlgN identified by similarity to GB:CAH19130.1 gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0636 YpsIP31758_0637 YpsIP31758_0637 YpsIP31758_0637 747181 747447 - putative anti-sigma-28 factor%2C FlgM identified by similarity to GB:AAK31636.1 gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0637 YpsIP31758_0638 YpsIP31758_0638 YpsIP31758_0638 747657 748475 - flagella basal body P-ring formation protein FlgA identified by similarity to GB:CAH19132.1%3B match to protein family HMM PF03240%3B match to protein family HMM TIGR03170 gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0638 YpsIP31758_0639 YpsIP31758_0639 flgB1 flgB1 748563 748928 + flagellar basal-body rod protein FlgB identified by match to protein family HMM PF00460%3B match to protein family HMM TIGR01396 gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0639 YpsIP31758_0640 YpsIP31758_0640 flgC2 flgC2 748931 749356 + flagellar basal-body rod protein FlgC identified by similarity to GB:AAN08638.1%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR01395 gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0640 YpsIP31758_0641 YpsIP31758_0641 flgD2 flgD2 749359 750015 + basal-body rod modification protein FlgD identified by similarity to SP:P75936%3B match to protein family HMM PF03963 gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0641 YpsIP31758_0642 YpsIP31758_0642 flgE2 flgE2 750070 751278 + flagellar hook protein flgE identified by similarity to SP:P75937%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM PF07559 gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0642 YpsIP31758_0643 YpsIP31758_0643 flgF1 flgF1 751278 752009 + flagellar basal-body rod protein FlgF identified by match to protein family HMM PF00460%3B match to protein family HMM TIGR02490 gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0643 YpsIP31758_0644 YpsIP31758_0644 flgG1 flgG1 752077 752862 + flagellar basal-body rod protein FlgG identified by similarity to GB:CAH19138.1%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02488 gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0644 YpsIP31758_0645 YpsIP31758_0645 flgH2 flgH2 752897 753562 + flagellar L-ring protein FlgH identified by match to protein family HMM PF02107 gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0645 YpsIP31758_0646 YpsIP31758_0646 flgI1 flgI1 753641 754759 + flagellar P-ring protein FlgI identified by match to protein family HMM PF02119 gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0646 YpsIP31758_0647 YpsIP31758_0647 YpsIP31758_0647 754769 755062 + putative lateral flagellar peptidoglycan hydrolase identified by similarity to GB:CAH19141.1 gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0647 YpsIP31758_0648 YpsIP31758_0648 flgK2 flgK2 755165 756526 + flagellar hook-associated protein FlgK identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02492 gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0648 YpsIP31758_0649 YpsIP31758_0649 flgL2 flgL2 756558 757475 + flagellar hook-associated protein 3 identified by similarity to SP:P16326%3B match to protein family HMM TIGR02550 gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0649 YpsIP31758_0650 YpsIP31758_0650 YpsIP31758_0650 757487 758500 + putative flagellar hook associated protein lafW identified by similarity to GB:CAH19144.1 gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0650 YpsIP31758_0651 YpsIP31758_0651 YpsIP31758_0651 758664 759110 - conserved hypothetical protein identified by similarity to GB:AAS63220.1 gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0651 YpsIP31758_0652 YpsIP31758_0652 YpsIP31758_0652 759091 760137 - transcriptional regulator identified by match to protein family HMM PF00486 gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0652 YpsIP31758_0653 YpsIP31758_0653 YpsIP31758_0653 760761 761954 + flagellin identified by similarity to SP:P21184%3B match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0653 YpsIP31758_0654 YpsIP31758_0654 YpsIP31758_0654 762606 763790 + flagellin identified by similarity to SP:Q03473%3B match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0654 YpsIP31758_0655 YpsIP31758_0655 fliD1 fliD1 764010 765296 + flagellar hook-associated protein 2 identified by similarity to SP:Q03475%3B match to protein family HMM PF02465%3B match to protein family HMM PF07195%3B match to protein family HMM PF07196 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0655 YpsIP31758_0656 YpsIP31758_0656 fliS1 fliS1 765306 765689 + flagellar protein FliS identified by similarity to SP:P26609%3B match to protein family HMM PF02561%3B match to protein family HMM TIGR00208 gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0656 YpsIP31758_0657 YpsIP31758_0657 YpsIP31758_0657 765691 766017 + putative flagellar protein lafD identified by similarity to GB:CAH19151.1 gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0657 YpsIP31758_0658 YpsIP31758_0658 fliK2 fliK2 766019 767116 + flagellar hook-length control protein identified by match to protein family HMM PF02120 gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0658 YpsIP31758_0659 YpsIP31758_0659 YpsIP31758_0659 767142 767612 + putative flagellar protein identified by similarity to SP:Q03476 gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0659 YpsIP31758_0660 YpsIP31758_0660 fliA2 fliA2 767618 768313 + flagellar operon sigma factor %2C sigma-28 identified by similarity to SP:Q03474%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02479%3B match to protein family HMM TIGR02937 gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0660 YpsIP31758_0661 YpsIP31758_0661 motA2 motA2 768329 769195 + chemotaxis protein MotA identified by similarity to SP:P09348%3B match to protein family HMM PF01618 gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0661 YpsIP31758_0662 YpsIP31758_0662 motB2 motB2 769195 770106 + flagellar motor protein B identified by similarity to GB:CAH19156.1%3B match to protein family HMM PF00691 gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0662 YpsIP31758_0663 YpsIP31758_0663 YpsIP31758_0663 770615 770752 + hypothetical protein identified by glimmer%3B putative gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0663 YpsIP31758_0664 YpsIP31758_0664 YpsIP31758_0664 770749 771204 + putative membrane protein gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0664 YpsIP31758_0665 YpsIP31758_0665 pcP pcP 771723 772190 - outer membrane lipoprotein PcP identified by similarity to SP:P31484%3B match to protein family HMM PF05433 gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0665 YpsIP31758_0666 YpsIP31758_0666 YpsIP31758_0666 773496 776063 - sensory box-containing diguanylate cyclase identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF05228%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0666 YpsIP31758_0667 YpsIP31758_0667 YpsIP31758_0667 776623 777813 + efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0667 YpsIP31758_0668 YpsIP31758_0668 YpsIP31758_0668 777826 780945 + RND transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915 gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0668 YpsIP31758_0669 YpsIP31758_0669 YpsIP31758_0669 781073 781525 - conserved hypothetical protein identified by similarity to GB:AAY60248.1 gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0669 YpsIP31758_0670 YpsIP31758_0670 YpsIP31758_0670 780974 781093 + hypothetical protein identified by glimmer%3B putative gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0670 YpsIP31758_0671 YpsIP31758_0671 YpsIP31758_0671 782224 783714 - putative enterotoxin identified by match to protein family HMM PF07906 gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0671 YpsIP31758_0672 YpsIP31758_0672 YpsIP31758_0672 783989 784576 + conserved hypothetical protein gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0672 YpsIP31758_0673 YpsIP31758_0673 YpsIP31758_0673 785383 798558 + putative autotransporter protein identified by match to protein family HMM PF03212%3B match to protein family HMM PF03797%3B match to protein family HMM TIGR01414%3B match to protein family HMM TIGR02601%3B match to protein family HMM TIGR03304 gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0673 YpsIP31758_0674 YpsIP31758_0674 YpsIP31758_0674 798675 798818 - hypothetical protein identified by glimmer%3B putative gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0674 YpsIP31758_0675 YpsIP31758_0675 YpsIP31758_0675 798823 799779 - putative outer membrane protein identified by similarity to SP:P17778 gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0675 YpsIP31758_0676 YpsIP31758_0676 yopM yopM 800106 800960 - outer membrane protein YopM identified by similarity to SP:P17778 gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0676 YpsIP31758_0677 YpsIP31758_0677 YpsIP31758_0677 801187 803061 - putative outer membrane protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0677 YpsIP31758_0678 YpsIP31758_0678 YpsIP31758_0678 803777 805333 + AbgT family protein identified by match to protein family HMM PF03806 gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0678 YpsIP31758_0679 YpsIP31758_0679 YpsIP31758_0679 805717 805842 + hypothetical protein identified by glimmer%3B putative gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0679 YpsIP31758_0680 YpsIP31758_0680 pepT1 pepT1 805864 807096 + peptidase T identified by match to protein family HMM PF01546%3B match to protein family HMM PF05343%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01882 gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0680 YpsIP31758_0681 YpsIP31758_0681 YpsIP31758_0681 807480 809552 + TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0681 YpsIP31758_0682 YpsIP31758_0682 YpsIP31758_0682 809703 811184 + AMP-binding protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF00501 pseudogene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0682 YpsIP31758_0683 YpsIP31758_0683 YpsIP31758_0683 811396 821277 + nonribosomal peptide synthetase identified by match to protein family HMM PF00109%3B match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR01733 gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0683 YpsIP31758_0684 YpsIP31758_0684 YpsIP31758_0684 821290 826956 + putative pyochelin synthetase identified by similarity to GB:AAY92759.1%3B match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM PF00975%3B match to protein family HMM TIGR01733 gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0684 YpsIP31758_0685 YpsIP31758_0685 YpsIP31758_0685 826953 828023 + saccharopine dehydrogenase identified by match to protein family HMM PF03435 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0685 YpsIP31758_0686 YpsIP31758_0686 YpsIP31758_0686 828020 829147 + thiazolinyl imide reductase family protein identified by match to protein family HMM PF01408%3B match to protein family HMM TIGR01761 gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0686 YpsIP31758_0687 YpsIP31758_0687 YpsIP31758_0687 829140 829904 + putative thioesterase identified by match to protein family HMM PF00975 gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0687 YpsIP31758_0688 YpsIP31758_0688 YpsIP31758_0688 829894 831198 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0688 YpsIP31758_0689 YpsIP31758_0689 YpsIP31758_0689 831198 832970 + ABC transporter%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0689 YpsIP31758_0690 YpsIP31758_0690 YpsIP31758_0690 832963 834720 + ABC transporter%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0690 YpsIP31758_0691 YpsIP31758_0691 YpsIP31758_0691 835062 835937 - conserved hypothetical protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0691 YpsIP31758_0692 YpsIP31758_0692 YpsIP31758_0692 836373 836771 - hypothetical protein identified by glimmer%3B putative gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0692 YpsIP31758_0693 YpsIP31758_0693 gntP gntP 838308 839651 + high-affinity gluconate transporter GntP identified by similarity to SP:P0AC94%3B match to protein family HMM PF02447%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00791 gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0693 YpsIP31758_0694 YpsIP31758_0694 YpsIP31758_0694 840677 844456 + putative autotransporter protein identified by match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0694 YpsIP31758_0695 YpsIP31758_0695 YpsIP31758_0695 845114 848893 + putative autotransporter protein identified by match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0695 YpsIP31758_0696 YpsIP31758_0696 YpsIP31758_0696 849479 851704 + putative VgrG protein identified by match to protein family HMM PF04524%3B match to protein family HMM PF06715%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0696 YpsIP31758_0697 YpsIP31758_0697 YpsIP31758_0697 851730 853049 + conserved hypothetical protein identified by similarity to GB:CAH39533.1 gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0697 YpsIP31758_0698 YpsIP31758_0698 YpsIP31758_0698 853063 857541 + YD/RHS repeat protein identified by match to protein family HMM PF05593%3B match to protein family HMM TIGR01643 gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0698 YpsIP31758_0699 YpsIP31758_0699 YpsIP31758_0699 857561 857923 + hypothetical protein identified by glimmer%3B putative gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0699 YpsIP31758_0700 YpsIP31758_0700 YpsIP31758_0700 858047 859030 + putative RhsD protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0700 YpsIP31758_0701 YpsIP31758_0701 YpsIP31758_0701 859027 859542 + hypothetical protein identified by glimmer%3B putative gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0701 YpsIP31758_0702 YpsIP31758_0702 YpsIP31758_0702 859673 860011 + conserved hypothetical protein identified by similarity to RF:NP_834520.1 gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0702 YpsIP31758_0703 YpsIP31758_0703 YpsIP31758_0703 860252 860776 + hypothetical protein identified by glimmer%3B putative gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0703 YpsIP31758_0704 YpsIP31758_0704 YpsIP31758_0704 861051 861437 + hypothetical protein identified by glimmer%3B putative gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0704 YpsIP31758_0705 YpsIP31758_0705 YpsIP31758_0705 861982 862395 + conserved hypothetical protein identified by similarity to GB:AAN83394.1 gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0705 YpsIP31758_0706 YpsIP31758_0706 YpsIP31758_0706 862574 863953 - transporter%2C divalent anion:Na+ symporter (DASS) family identified by match to protein family HMM PF00939%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00785 gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0706 YpsIP31758_0707 YpsIP31758_0707 YpsIP31758_0707 864235 865230 - sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0707 YpsIP31758_0708 YpsIP31758_0708 YpsIP31758_0708 865548 866621 + conserved hypothetical protein identified by similarity to GB:BAC60658.1 gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0708 YpsIP31758_0709 YpsIP31758_0709 gph1 gph1 866783 868207 + sugar (Glycoside-Pentoside-Hexuronide) transporter identified by match to protein family HMM TIGR00792 gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0709 YpsIP31758_0710 YpsIP31758_0710 YpsIP31758_0710 868514 870694 - TonB-dependent siderophore receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783 gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0710 YpsIP31758_0711 YpsIP31758_0711 iucD iucD 870766 872094 - aerobactin siderophore biosynthesis protein IucD Part of the aerobactin biosynthesis operon.%3B identified by similarity to SP:P11295 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0711 YpsIP31758_0712 YpsIP31758_0712 iucC iucC 872091 873839 - aerobactin siderophore biosynthesis protein IucC Part of the aerobactin biosynthesis operon.%3B identified by match to protein family HMM PF04183 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0712 YpsIP31758_0713 YpsIP31758_0713 iucB iucB 873836 874786 - aerobactin siderophore biosynthesis protein IucB Part of the aerobactin biosynthesis operon.%3B identified by similarity to GB:AAZ90153.1 gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0713 YpsIP31758_0714 YpsIP31758_0714 iucA iucA 874770 876542 - aerobactin siderophore biosynthesis protein IucA Part of the aerobactin biosynthesis operon.%3B identified by match to protein family HMM PF04183 gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0714 YpsIP31758_0715 YpsIP31758_0715 YpsIP31758_0715 876682 877905 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0715 YpsIP31758_0716 YpsIP31758_0716 YpsIP31758_0716 878195 879028 - dioxygenase family protein identified by match to protein family HMM PF00775 gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0716 YpsIP31758_0717 YpsIP31758_0717 YpsIP31758_0717 879102 879224 + hypothetical protein identified by glimmer%3B putative gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0717 YpsIP31758_0718 YpsIP31758_0718 YpsIP31758_0718 879419 880777 - hypothetical protein identified by glimmer%3B putative gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0718 YpsIP31758_0719 YpsIP31758_0719 ytbI ytbI 882063 882713 - N-acylhomoserine lactone synthase YtbI identified by similarity to GB:AAC28704.2%3B match to protein family HMM PF00765 gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0719 YpsIP31758_0720 YpsIP31758_0720 YpsIP31758_0720 881339 882082 + transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00196%3B match to protein family HMM PF03472 gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0720 YpsIP31758_0721 YpsIP31758_0721 YpsIP31758_0721 883884 884534 + CAAX amino terminal protease family protein identified by match to protein family HMM PF02517 gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0721 YpsIP31758_0722 YpsIP31758_0722 YpsIP31758_0722 884659 884784 - hypothetical protein identified by glimmer%3B putative gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0722 YpsIP31758_0723 YpsIP31758_0723 YpsIP31758_0723 884985 885380 + putative lipoprotein identified by similarity to GB:CAC89826.1 gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0723 YpsIP31758_0724 YpsIP31758_0724 YpsIP31758_0724 885448 885711 + IS1%2C transposase orfA identified by match to protein family HMM PF03811 gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0724 YpsIP31758_0725 YpsIP31758_0725 YpsIP31758_0725 886255 886383 - hypothetical protein identified by glimmer%3B putative gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0725 YpsIP31758_0726 YpsIP31758_0726 YpsIP31758_0726 887643 888143 + conserved hypothetical protein identified by similarity to GB:AAN81830.1%3B match to protein family HMM PF05591%3B match to protein family HMM TIGR03358 gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0726 YpsIP31758_0727 YpsIP31758_0727 YpsIP31758_0727 888186 889736 + conserved hypothetical protein identified by similarity to GB:AAN81831.1%3B match to protein family HMM PF05943%3B match to protein family HMM TIGR03355 gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0727 YpsIP31758_0728 YpsIP31758_0728 YpsIP31758_0728 889748 891100 + conserved hypothetical protein identified by similarity to GB:AAN81832.1%3B match to protein family HMM PF05936%3B match to protein family HMM TIGR03353 gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0728 YpsIP31758_0729 YpsIP31758_0729 YpsIP31758_0729 891097 891783 + conserved hypothetical protein identified by similarity to GB:AAN81833.1%3B match to protein family HMM TIGR03349 gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0729 YpsIP31758_0730 YpsIP31758_0730 YpsIP31758_0730 891783 893519 + OmpA domain protein identified by match to protein family HMM PF00691 gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0730 YpsIP31758_0731 YpsIP31758_0731 YpsIP31758_0731 893523 894014 + conserved hypothetical protein identified by similarity to GB:AAN81836.1%3B match to protein family HMM PF05638%3B match to protein family HMM TIGR03344 gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0731 YpsIP31758_0732 YpsIP31758_0732 clpV1 clpV1 894308 896956 + type VI secretion ATPase%2C ClpV1 family identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR03345 gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0732 YpsIP31758_0733 YpsIP31758_0733 YpsIP31758_0733 896953 899301 + type VI secretion system family protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0733 YpsIP31758_0734 YpsIP31758_0734 YpsIP31758_0734 899316 901538 + M23 peptidase domain protein identified by match to protein family HMM PF01551 gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0734 YpsIP31758_0735 YpsIP31758_0735 YpsIP31758_0735 902342 902617 + IS1 family transposase orfA identified by match to protein family HMM PF03811 gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0735 YpsIP31758_0736 YpsIP31758_0736 YpsIP31758_0736 902671 903038 + IS1 family transposase orfB%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to RF:ZP_00792849.1 pseudogene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0736 YpsIP31758_0737 YpsIP31758_0737 YpsIP31758_0737 903639 904283 + conserved hypothetical protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error pseudogene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0737 YpsIP31758_0738 YpsIP31758_0738 YpsIP31758_0738 904299 906596 + M23 peptidase domain protein identified by match to protein family HMM PF01551 gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0738 YpsIP31758_0739 YpsIP31758_0739 YpsIP31758_0739 906583 907350 + hypothetical protein identified by glimmer%3B putative gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0739 YpsIP31758_0740 YpsIP31758_0740 YpsIP31758_0740 907446 907721 + IS1 family transposase orfA identified by match to protein family HMM PF03811 gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0740 YpsIP31758_0741 YpsIP31758_0741 YpsIP31758_0741 907775 908143 + IS1 family transposase orfB identified by match to protein family HMM PF03400 gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0741 YpsIP31758_0742 YpsIP31758_0742 Rhs element Vgr protein Rhs element Vgr protein 908773 909381 + pseudogene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0742 YpsIP31758_0743 YpsIP31758_0743 YpsIP31758_0743 909405 909713 + site-specific recombinase%2C phage integrase family%2C truncation gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0743 YpsIP31758_0744 YpsIP31758_0744 YpsIP31758_0744 910172 910459 - DNA-binding protein identified by match to protein family HMM PF01381 gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0744 YpsIP31758_0745 YpsIP31758_0745 YpsIP31758_0745 910446 910769 - conserved hypothetical protein identified by similarity to GB:CAE12737.1%3B match to protein family HMM PF05973 gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0745 YpsIP31758_0746 YpsIP31758_0746 YpsIP31758_0746 910969 911835 - conserved hypothetical protein gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0746 YpsIP31758_0747 YpsIP31758_0747 YpsIP31758_0747 911931 912251 - conserved hypothetical protein identified by similarity to SP:P52141%3B match to protein family HMM PF06154 gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0747 YpsIP31758_0748 YpsIP31758_0748 YpsIP31758_0748 912263 912619 - conserved hypothetical protein identified by match to protein family HMM PF06755 gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0748 YpsIP31758_0749 YpsIP31758_0749 YpsIP31758_0749 912675 913007 - putative membrane protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0749 YpsIP31758_0750 YpsIP31758_0750 YpsIP31758_0750 913001 913489 - DNA repair protein%2C RadC family identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0750 YpsIP31758_0751 YpsIP31758_0751 YpsIP31758_0751 912819 913004 + hypothetical protein identified by glimmer%3B putative gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0751 YpsIP31758_0752 YpsIP31758_0752 YpsIP31758_0752 913506 913937 - antirestriction protein%2C ArdB family identified by match to protein family HMM PF03230 gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0752 YpsIP31758_0753 YpsIP31758_0753 YpsIP31758_0753 914065 914325 - conserved hypothetical protein identified by similarity to GB:AAN78764.1 gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0753 YpsIP31758_0754 YpsIP31758_0754 YpsIP31758_0754 914325 915146 - conserved hypothetical protein identified by similarity to GB:AAB08671.1%3B match to protein family HMM PF06067 gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0754 YpsIP31758_0755 YpsIP31758_0755 YpsIP31758_0755 915243 915710 - conserved hypothetical protein identified by similarity to SP:P77162 gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0755 YpsIP31758_0756 YpsIP31758_0756 YpsIP31758_0756 915814 916350 - putative membrane protein gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0756 YpsIP31758_0757 YpsIP31758_0757 YpsIP31758_0757 916473 917093 - hypothetical protein identified by glimmer%3B putative gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0757 YpsIP31758_0758 YpsIP31758_0758 YpsIP31758_0758 917099 917800 - transcriptional regulator gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0758 YpsIP31758_0759 YpsIP31758_0759 YpsIP31758_0759 918013 918888 - putative GTPase identified by match to protein family HMM PF01926 gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0759 YpsIP31758_0760 YpsIP31758_0760 YpsIP31758_0760 918996 919883 - hypothetical protein identified by glimmer%3B putative gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0760 YpsIP31758_0761 YpsIP31758_0761 YpsIP31758_0761 920298 920444 - hypothetical protein identified by glimmer%3B putative gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0761 YpsIP31758_0762 YpsIP31758_0762 YpsIP31758_0762 921173 921802 + conserved hypothetical protein identified by similarity to GB:AAN80956.1 gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0762 YpsIP31758_0763 YpsIP31758_0763 YpsIP31758_0763 921909 922118 + AlpA family protein identified by match to protein family HMM PF05930 gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0763 YpsIP31758_0764 YpsIP31758_0764 YpsIP31758_0764 922236 922403 - hypothetical protein identified by glimmer%3B putative gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0764 YpsIP31758_0765 YpsIP31758_0765 YpsIP31758_0765 922476 922604 + hypothetical protein identified by glimmer%3B putative gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0765 YpsIP31758_0766 YpsIP31758_0766 YpsIP31758_0766 922613 922744 + hypothetical protein identified by glimmer%3B putative gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0766 YpsIP31758_0767 YpsIP31758_0767 YpsIP31758_0767 923029 923625 + conserved hypothetical protein gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0767 YpsIP31758_0768 YpsIP31758_0768 YpsIP31758_0768 924077 924703 + conserved hypothetical protein identified by similarity to GB:CAI43834.1 gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0768 YpsIP31758_0769 YpsIP31758_0769 YpsIP31758_0769 924763 925350 - IS630 family transposase identified by similarity to RF:ZP_00904929.1 gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0769 YpsIP31758_0770 YpsIP31758_0770 YpsIP31758_0770 926036 927595 + site-specific recombinase%2C resolvase family identified by match to protein family HMM PF07508 gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0770 YpsIP31758_0771 YpsIP31758_0771 YpsIP31758_0771 927592 928482 + ParB family protein identified by match to protein family HMM PF02195 gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0771 YpsIP31758_0772 YpsIP31758_0772 YpsIP31758_0772 928475 929359 + RepB plasmid partitioning protein identified by match to protein family HMM PF07506 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0772 YpsIP31758_0773 YpsIP31758_0773 YpsIP31758_0773 929753 929992 - hypothetical protein identified by glimmer%3B putative gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0773 YpsIP31758_0774 YpsIP31758_0774 YpsIP31758_0774 930649 930918 - conserved hypothetical protein gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0774 YpsIP31758_0775 YpsIP31758_0775 YpsIP31758_0775 930920 931306 - putative membrane protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P33218 pseudogene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0775 YpsIP31758_0776 YpsIP31758_0776 YpsIP31758_0776 931614 931871 - transcriptional regulator%2C PerC family gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0776 YpsIP31758_0777 YpsIP31758_0777 YpsIP31758_0777 932854 933354 + conserved hypothetical protein identified by similarity to GB:AAN81830.1%3B match to protein family HMM PF05591%3B match to protein family HMM TIGR03358 gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0777 YpsIP31758_0778 YpsIP31758_0778 YpsIP31758_0778 933399 934952 + conserved hypothetical protein identified by similarity to GB:AAN81831.1%3B match to protein family HMM PF05943%3B match to protein family HMM TIGR03355 gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0778 YpsIP31758_0779 YpsIP31758_0779 YpsIP31758_0779 935078 936430 + conserved hypothetical protein identified by similarity to GB:AAN81832.1%3B match to protein family HMM PF05936%3B match to protein family HMM TIGR03353 gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0779 YpsIP31758_0780 YpsIP31758_0780 YpsIP31758_0780 936427 937113 + conserved hypothetical protein identified by similarity to GB:AAN81833.1%3B match to protein family HMM TIGR03349 gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0780 YpsIP31758_0781 YpsIP31758_0781 YpsIP31758_0781 937113 938834 + OmpA domain protein identified by match to protein family HMM PF00691 gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0781 YpsIP31758_0782 YpsIP31758_0782 YpsIP31758_0782 938848 939339 + conserved hypothetical protein identified by similarity to GB:AAN81836.1%3B match to protein family HMM PF05638%3B match to protein family HMM TIGR03344 gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0782 YpsIP31758_0783 YpsIP31758_0783 YpsIP31758_0783 939402 939530 - hypothetical protein identified by glimmer%3B putative gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0783 YpsIP31758_0784 YpsIP31758_0784 YpsIP31758_0784 939886 942534 + ATPase%2C AAA family%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR03345 pseudogene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0784 YpsIP31758_0785 YpsIP31758_0785 YpsIP31758_0785 942531 945029 + Rhs element Vgr protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0785 YpsIP31758_0786 YpsIP31758_0786 YpsIP31758_0786 945147 946418 + hypothetical protein identified by glimmer%3B putative gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0786 YpsIP31758_0787 YpsIP31758_0787 YpsIP31758_0787 946425 946817 + putative lipoprotein gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0787 YpsIP31758_0788 YpsIP31758_0788 YpsIP31758_0788 947132 949834 + Rhs element Vgr protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0788 YpsIP31758_0789 YpsIP31758_0789 YpsIP31758_0789 949837 950253 + hypothetical protein identified by glimmer%3B putative gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0789 YpsIP31758_0790 YpsIP31758_0790 YpsIP31758_0790 950262 951074 + hypothetical protein identified by glimmer%3B putative gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0790 YpsIP31758_0791 YpsIP31758_0791 YpsIP31758_0791 951254 952009 + hypothetical protein identified by glimmer%3B putative gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0791 YpsIP31758_0792 YpsIP31758_0792 YpsIP31758_0792 952014 952532 + conserved hypothetical protein identified by similarity to RF:NP_457513.1 gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0792 YpsIP31758_0793 YpsIP31758_0793 YpsIP31758_0793 953009 953152 + hypothetical protein identified by glimmer%3B putative gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0793 YpsIP31758_0794 YpsIP31758_0794 YpsIP31758_0794 953312 954544 + conserved hypothetical protein identified by similarity to GB:AAM86242.1 gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0794 YpsIP31758_0795 YpsIP31758_0795 YpsIP31758_0795 954541 957963 + conserved hypothetical protein identified by match to protein family HMM PF06744%3B match to protein family HMM PF06761 gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0795 YpsIP31758_0796 YpsIP31758_0796 YpsIP31758_0796 958005 959609 + ImpA domain protein identified by match to protein family HMM PF06812%3B match to protein family HMM TIGR03362 gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0796 YpsIP31758_0797 YpsIP31758_0797 YpsIP31758_0797 959627 960685 + PAAR domain protein identified by match to protein family HMM PF05488 gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0797 YpsIP31758_0798 YpsIP31758_0798 YpsIP31758_0798 960700 961155 + hypothetical protein identified by glimmer%3B putative gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0798 YpsIP31758_0799 YpsIP31758_0799 YpsIP31758_0799 961183 961299 + hypothetical protein identified by glimmer%3B putative gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0799 YpsIP31758_0800 YpsIP31758_0800 YpsIP31758_0800 961400 963163 + conserved hypothetical protein identified by similarity to GB:CAE15599.1%3B match to protein family HMM PF05947%3B match to protein family HMM TIGR03359 gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0800 YpsIP31758_0801 YpsIP31758_0801 YpsIP31758_0801 963127 964212 + conserved hypothetical protein identified by similarity to GB:CAE15598.1%3B match to protein family HMM PF06996%3B match to protein family HMM TIGR03347 gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0801 YpsIP31758_0802 YpsIP31758_0802 YpsIP31758_0802 964187 964768 + conserved hypothetical protein identified by similarity to GB:AAN81846.1%3B match to protein family HMM TIGR03352 gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0802 YpsIP31758_0803 YpsIP31758_0803 YpsIP31758_0803 964768 965217 + conserved hypothetical protein identified by similarity to GB:AAN81847.1%3B match to protein family HMM PF07025%3B match to protein family HMM TIGR03357 gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0803 YpsIP31758_0804 YpsIP31758_0804 YpsIP31758_0804 965335 965463 - hypothetical protein identified by glimmer%3B putative gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0804 YpsIP31758_0805 YpsIP31758_0805 YpsIP31758_0805 965818 967215 + ImpA domain protein identified by match to protein family HMM PF06812 gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0805 YpsIP31758_0806 YpsIP31758_0806 YpsIP31758_0806 967310 967942 + hypothetical protein identified by glimmer%3B putative gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0806 YpsIP31758_0807 YpsIP31758_0807 YpsIP31758_0807 968006 969856 + conserved hypothetical protein identified by similarity to GB:ABA56613.1 gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0807 YpsIP31758_0808 YpsIP31758_0808 YpsIP31758_0808 970166 975730 - conserved hypothetical protein identified by similarity to GB:AAY49450.1 gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0808 YpsIP31758_0809 YpsIP31758_0809 YpsIP31758_0809 976127 977386 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0809 YpsIP31758_0810 YpsIP31758_0810 YpsIP31758_0810 978155 978307 + hypothetical protein identified by glimmer%3B putative gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0810 YpsIP31758_0811 YpsIP31758_0811 speC speC 978327 980489 + ornithine decarboxylase%2C constitutive identified by similarity to SP:P21169%3B match to protein family HMM PF01276%3B match to protein family HMM PF03709%3B match to protein family HMM PF03711 gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0811 YpsIP31758_0812 YpsIP31758_0812 YpsIP31758_0812 981070 982029 + sugar ABC transporter%2C periplasmic sugar-binding protein identified by match to protein family HMM PF00532 gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0812 YpsIP31758_0813 YpsIP31758_0813 YpsIP31758_0813 982075 983574 + sugar ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0813 YpsIP31758_0814 YpsIP31758_0814 YpsIP31758_0814 983607 984590 + sugar ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0814 YpsIP31758_0815 YpsIP31758_0815 YpsIP31758_0815 984781 986925 - TonB-dependent siderophore receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783 gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0815 YpsIP31758_0816 YpsIP31758_0816 YpsIP31758_0816 986918 988018 - ABC transporter%2C periplasmic substrate-binding protein identified by match to protein family HMM PF01497 gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0816 YpsIP31758_0817 YpsIP31758_0817 YpsIP31758_0817 988318 989394 - putative membrane-bound lytic murein transglycosylase C identified by match to protein family HMM PF01464 gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0817 YpsIP31758_0818 YpsIP31758_0818 YpsIP31758_0818 989701 989973 - putative Fe(2+) trafficking protein YggX identified by match to protein family HMM PF04362 gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0818 YpsIP31758_0819 YpsIP31758_0819 mutY mutY 990151 991266 - A/G-specific adenine glycosylase identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01084 gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0819 YpsIP31758_0820 YpsIP31758_0820 trmB trmB 991679 992398 + tRNA (guanine-N(7)-)-methyltransferase identified by match to protein family HMM PF02390%3B match to protein family HMM TIGR00091 gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0820 YpsIP31758_0821 YpsIP31758_0821 YpsIP31758_0821 992398 992724 + conserved hypothetical protein identified by similarity to SP:P38521%3B match to protein family HMM PF04320 gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0821 YpsIP31758_0822 YpsIP31758_0822 YpsIP31758_0822 992835 993761 + glutaminase identified by match to protein family HMM PF04960 gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0822 YpsIP31758_0823 YpsIP31758_0823 YpsIP31758_0823 993873 994607 + conserved hypothetical protein identified by similarity to SP:P0ADS9 gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0823 YpsIP31758_0824 YpsIP31758_0824 YpsIP31758_0824 995132 1004446 + putative phage minor structural protein identified by match to protein family HMM PF00353 gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0824 YpsIP31758_0825 YpsIP31758_0825 YpsIP31758_0825 1004615 1005745 - putative oxygen-independent coproporphyrinogen III oxidase identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00539 gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0825 YpsIP31758_0826 YpsIP31758_0826 rdgB rdgB 1005738 1006331 - non-canonical purine NTP pyrophosphatase RdgB identified by match to protein family HMM PF01725%3B match to protein family HMM TIGR00042 gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0826 YpsIP31758_0827 YpsIP31758_0827 YpsIP31758_0827 1006431 1006721 - conserved hypothetical protein TIGR00251 identified by similarity to GB:CAH22454.1%3B match to protein family HMM PF02594%3B match to protein family HMM TIGR00251 gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0827 YpsIP31758_0828 YpsIP31758_0828 YpsIP31758_0828 1006718 1007272 - putative YggT family membrane protein identified by match to protein family HMM PF02325 gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0828 YpsIP31758_0829 YpsIP31758_0829 proC proC 1007560 1008381 - pyrroline-5-carboxylate reductase identified by match to protein family HMM PF01210%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00112 gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0829 YpsIP31758_0830 YpsIP31758_0830 YpsIP31758_0830 1008514 1009212 - conserved hypothetical protein TIGR00044 identified by similarity to SP:P67080%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00044 gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0830 YpsIP31758_0831 YpsIP31758_0831 YpsIP31758_0831 1009232 1010356 + twitching motility protein identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR01420 gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0831 YpsIP31758_0832 YpsIP31758_0832 aguA aguA 1010465 1011562 - agmatine deiminase identified by similarity to SP:Q9I6J9%3B match to protein family HMM PF04371%3B match to protein family HMM TIGR03380 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0832 YpsIP31758_0833 YpsIP31758_0833 aguB aguB 1011584 1012468 - N-carbamoylputrescine amidohydrolase identified by similarity to GB:AAG03682.1%3B match to protein family HMM PF00795%3B match to protein family HMM TIGR03381 gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0833 YpsIP31758_0834 YpsIP31758_0834 YpsIP31758_0834 1012648 1013070 - conserved hypothetical protein TIGR00250 identified by similarity to SP:P0A8I1%3B match to protein family HMM PF03652%3B match to protein family HMM TIGR00250 gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0834 YpsIP31758_0835 YpsIP31758_0835 YpsIP31758_0835 1013070 1013633 - conserved hypothetical protein identified by similarity to GB:CAG76822.1%3B match to protein family HMM PF02622 gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0835 YpsIP31758_0836 YpsIP31758_0836 gshB gshB 1013749 1014708 - glutathione synthase identified by match to protein family HMM PF02951%3B match to protein family HMM PF02955%3B match to protein family HMM TIGR01380 gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0836 YpsIP31758_0837 YpsIP31758_0837 rsmE rsmE 1014734 1015465 - ribosomal small subunit methyltransferase RsmE identified by similarity to SP:P37912%3B match to protein family HMM PF04452%3B match to protein family HMM TIGR00046 gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0837 YpsIP31758_0838 YpsIP31758_0838 YpsIP31758_0838 1015574 1015729 - hypothetical protein identified by glimmer%3B putative gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0838 YpsIP31758_0839 YpsIP31758_0839 endA endA 1015708 1016415 - endonuclease I identified by similarity to SP:P25736%3B match to protein family HMM PF04231 gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0839 YpsIP31758_0840 YpsIP31758_0840 sprT sprT 1016513 1017025 - sprT protein identified by match to protein family HMM PF03926 gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0840 YpsIP31758_0841 YpsIP31758_0841 metK metK 1017217 1018371 - S-adenosylmethionine synthetase identified by match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034 gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0841 YpsIP31758_0842 YpsIP31758_0842 YpsIP31758_0842 1018830 1018949 + hypothetical protein identified by glimmer%3B putative gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0842 YpsIP31758_0843 YpsIP31758_0843 speA speA 1019578 1021557 + biosynthetic arginine decarboxylase identified by similarity to SP:P21170%3B match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01273 gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0843 YpsIP31758_0844 YpsIP31758_0844 YpsIP31758_0844 1021717 1022037 + iron-sulfur cluster-binding protein%2C Rieske family identified by match to protein family HMM PF00355 gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0844 YpsIP31758_0845 YpsIP31758_0845 YpsIP31758_0845 1022327 1023079 - peptidase%2C M48 family identified by match to protein family HMM PF01435 gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0845 YpsIP31758_0846 YpsIP31758_0846 YpsIP31758_0846 1023115 1023243 + hypothetical protein identified by glimmer%3B putative gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0846 YpsIP31758_0847 YpsIP31758_0847 tkt tkt 1023553 1025547 + transketolase identified by similarity to SP:P27302%3B match to protein family HMM PF00456%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00232 gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0847 YpsIP31758_0848 YpsIP31758_0848 epd epd 1025944 1026960 + D-erythrose-4-phosphate dehydrogenase identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01532 gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0848 YpsIP31758_0849 YpsIP31758_0849 pgk pgk 1027063 1028226 + phosphoglycerate kinase identified by match to protein family HMM PF00162 gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0849 YpsIP31758_0850 YpsIP31758_0850 fbaA fbaA 1028346 1029425 + fructose-bisphosphate aldolase%2C class II identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01520 gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0850 YpsIP31758_0851 YpsIP31758_0851 YpsIP31758_0851 1030049 1030918 + transporter%2C small conductance mechanosensitive ion channel (MscS) family identified by match to protein family HMM PF00924%3B match to protein family HMM PF05552 gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0851 YpsIP31758_0852 YpsIP31758_0852 argO argO 1031163 1031780 + arginine exporter protein ArgO identified by similarity to SP:P11667%3B match to protein family HMM PF01810%3B match to protein family HMM TIGR00948 gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0852 YpsIP31758_0853 YpsIP31758_0853 YpsIP31758_0853 1031970 1032749 + conserved hypothetical protein identified by match to protein family HMM PF04402 gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0853 YpsIP31758_0854 YpsIP31758_0854 iciA iciA 1032760 1033668 - chromosome initiation inhibitor identified by similarity to SP:P0A8S1%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0854 YpsIP31758_0855 YpsIP31758_0855 rpiA2 rpiA2 1034010 1034666 + ribose 5-phosphate isomerase A identified by match to protein family HMM PF06026%3B match to protein family HMM TIGR00021 gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0855 YpsIP31758_0856 YpsIP31758_0856 serA serA 1034973 1036214 + phosphoglycerate dehydrogenase identified by similarity to SP:P0A9T0%3B match to protein family HMM PF00389%3B match to protein family HMM PF01842%3B match to protein family HMM PF02826 gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0856 YpsIP31758_0857 YpsIP31758_0857 YpsIP31758_0857 1036479 1037075 - 5%2C10-methenyltetrahydrofolate synthetase identified by match to protein family HMM PF01812%3B match to protein family HMM TIGR02727 gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0857 YpsIP31758_0858 YpsIP31758_0858 YpsIP31758_0858 1037455 1037784 - conserved hypothetical protein identified by match to protein family HMM PF05164 gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0858 YpsIP31758_0859 YpsIP31758_0859 YpsIP31758_0859 1038121 1038699 + YecA family protein identified by match to protein family HMM PF03695%3B match to protein family HMM TIGR02292 gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0859 YpsIP31758_0860 YpsIP31758_0860 pepP pepP 1038787 1040100 + Xaa-Pro aminopeptidase identified by similarity to SP:P15034%3B match to protein family HMM PF00557%3B match to protein family HMM PF05195 gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0860 YpsIP31758_0861 YpsIP31758_0861 ubiH ubiH 1040305 1041483 + 2-polyprenyl-6-methoxyphenol 4-hydroxylase identified by similarity to SP:P25534%3B match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM PF04820%3B match to protein family HMM TIGR01984%3B match to protein family HMM TIGR01988 gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0861 YpsIP31758_0862 YpsIP31758_0862 YpsIP31758_0862 1041656 1042876 + ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family identified by match to protein family HMM PF01494%3B match to protein family HMM TIGR01988 gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0862 YpsIP31758_0863 YpsIP31758_0863 gcvT gcvT 1043597 1044694 + glycine cleavage system T protein identified by match to protein family HMM PF01571%3B match to protein family HMM TIGR00528 gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0863 YpsIP31758_0864 YpsIP31758_0864 gcvH gcvH 1044763 1045149 + glycine cleavage system H protein identified by match to protein family HMM PF01597%3B match to protein family HMM TIGR00527 gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0864 YpsIP31758_0865 YpsIP31758_0865 gcvP gcvP 1045361 1048240 + glycine dehydrogenase identified by similarity to SP:P33195%3B match to protein family HMM PF02347%3B match to protein family HMM TIGR00461 gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0865 YpsIP31758_0866 YpsIP31758_0866 YpsIP31758_0866 1048449 1048586 + hypothetical protein identified by glimmer%3B putative gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0866 YpsIP31758_0867 YpsIP31758_0867 YpsIP31758_0867 1048618 1049055 + conserved hypothetical protein identified by similarity to GB:CAC89748.1 gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0867 YpsIP31758_0868 YpsIP31758_0868 YpsIP31758_0868 1050115 1052265 + haemagglutinin repeat protein identified by match to protein family HMM PF03895%3B match to protein family HMM PF05658%3B match to protein family HMM PF05662%3B match to protein family HMM TIGR03304 gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0868 YpsIP31758_0869 YpsIP31758_0869 YpsIP31758_0869 1052369 1053472 + conserved hypothetical protein gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0869 YpsIP31758_0870 YpsIP31758_0870 YpsIP31758_0870 1053674 1054375 + hemolysin III family protein identified by match to protein family HMM PF03006%3B match to protein family HMM TIGR01065 gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0870 YpsIP31758_0871 YpsIP31758_0871 YpsIP31758_0871 1054684 1055181 + conserved hypothetical protein identified by similarity to GB:CAH16438.1 gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0871 YpsIP31758_0872 YpsIP31758_0872 YpsIP31758_0872 1055254 1056246 - putative aminomethyltransferase identified by match to protein family HMM PF01571%3B match to protein family HMM TIGR03317 gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0872 YpsIP31758_0873 YpsIP31758_0873 YpsIP31758_0873 1056562 1056828 + conserved hypothetical protein identified by match to protein family HMM PF03937 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0873 YpsIP31758_0874 YpsIP31758_0874 YpsIP31758_0874 1056809 1057234 + conserved hypothetical protein identified by similarity to SP:Q46824%3B match to protein family HMM PF07254 gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0874 YpsIP31758_0875 YpsIP31758_0875 creB creB 1057234 1057932 + transcriptional regulatory protein CreB identified by similarity to SP:P08368%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0875 YpsIP31758_0876 YpsIP31758_0876 creC creC 1057957 1059390 + sensor protein CreC identified by similarity to SP:P08401%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0876 YpsIP31758_0877 YpsIP31758_0877 YpsIP31758_0877 1059475 1060932 + inner membrane protein CreD identified by match to protein family HMM PF06123 gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0877 YpsIP31758_0878 YpsIP31758_0878 fldB fldB 1061017 1061535 - flavodoxin 2 identified by match to protein family HMM PF00258%3B match to protein family HMM TIGR01752 gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0878 YpsIP31758_0879 YpsIP31758_0879 xerD xerD 1061642 1062541 + tyrosine recombinase XerD identified by similarity to SP:P0A8P8%3B match to protein family HMM PF00589%3B match to protein family HMM PF02899%3B match to protein family HMM TIGR02225 gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0879 YpsIP31758_0880 YpsIP31758_0880 dsbC dsbC 1062572 1063288 + thiol:disulfide interchange protein DsbC identified by similarity to SP:P39691 gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0880 YpsIP31758_0881 YpsIP31758_0881 recJ recJ 1063295 1065028 + single-stranded-DNA-specific exonuclease RecJ identified by similarity to SP:P21893%3B match to protein family HMM PF01368%3B match to protein family HMM PF02272%3B match to protein family HMM TIGR00644 gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0881 YpsIP31758_0882 YpsIP31758_0882 prfB prfB 1065207 1066305 + peptide chain release factor 2 identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00020%3B programmed frameshift gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0882 YpsIP31758_0883 YpsIP31758_0883 lysS lysS 1066315 1067832 + lysyl-tRNA synthetase identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00499 gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0883 YpsIP31758_0884 YpsIP31758_0884 YpsIP31758_0884 1068265 1069479 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0884 YpsIP31758_0885 YpsIP31758_0885 YpsIP31758_0885 1069561 1069746 - conserved hypothetical protein identified by similarity to GB:CAG74576.1%3B similarity to RF:YP_049771.1 gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0885 YpsIP31758_0886 YpsIP31758_0886 YpsIP31758_0886 1069847 1069972 - conserved hypothetical protein identified by similarity to GB:AAM86819.1 gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0886 YpsIP31758_0887 YpsIP31758_0887 YpsIP31758_0887 1070667 1071029 + helix-turn-helix DNA binding domain protein identified by match to protein family HMM PF01381 gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0887 YpsIP31758_0888 YpsIP31758_0888 YpsIP31758_0888 1071193 1071495 + conserved hypothetical protein identified by similarity to SP:Q46865 gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0888 YpsIP31758_0889 YpsIP31758_0889 YpsIP31758_0889 1071495 1071893 + putative transcriptional regulator gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0889 YpsIP31758_0890 YpsIP31758_0890 YpsIP31758_0890 1072293 1074584 - nucleoside triphosphatase%2C D5 family identified by match to protein family HMM PF03288 gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0890 YpsIP31758_0891 YpsIP31758_0891 YpsIP31758_0891 1074884 1075210 + conserved hypothetical protein identified by similarity to GB:CAE15219.1%3B match to protein family HMM PF05973 gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0891 YpsIP31758_0892 YpsIP31758_0892 YpsIP31758_0892 1075203 1075355 + conserved hypothetical protein gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0892 YpsIP31758_0893 YpsIP31758_0893 YpsIP31758_0893 1075369 1075569 - AlpA family protein identified by match to protein family HMM PF05930%3B match to protein family HMM TIGR01764 gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0893 YpsIP31758_0894 YpsIP31758_0894 YpsIP31758_0894 1075751 1076431 - hypothetical protein identified by glimmer%3B putative gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0894 YpsIP31758_0895 YpsIP31758_0895 YpsIP31758_0895 1076444 1076809 - hypothetical protein identified by glimmer%3B putative gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0895 YpsIP31758_0896 YpsIP31758_0896 YpsIP31758_0896 1077078 1078220 + Fic family protein identified by match to protein family HMM PF02661 gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0896 YpsIP31758_0897 YpsIP31758_0897 YpsIP31758_0897 1078699 1080231 + PAAR/S-type pyocin domain protein identified by match to protein family HMM PF05488%3B match to protein family HMM PF06958 gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0897 YpsIP31758_0898 YpsIP31758_0898 YpsIP31758_0898 1080463 1080576 - hypothetical protein identified by glimmer%3B putative gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0898 YpsIP31758_0899 YpsIP31758_0899 YpsIP31758_0899 1081009 1081332 + hypothetical protein identified by glimmer%3B putative gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0899 YpsIP31758_0900 YpsIP31758_0900 YpsIP31758_0900 1081730 1083901 + conserved hypothetical protein identified by similarity to RF:YP_052400.1 gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0900 YpsIP31758_0901 YpsIP31758_0901 YpsIP31758_0901 1083871 1084638 + conserved hypothetical protein identified by similarity to GB:CAG77211.1 gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0901 YpsIP31758_0902 YpsIP31758_0902 YpsIP31758_0902 1085244 1086023 + putative membrane protein gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0902 YpsIP31758_0903 YpsIP31758_0903 YpsIP31758_0903 1086240 1086545 + PAAR domain protein identified by match to protein family HMM PF05488 gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0903 YpsIP31758_0904 YpsIP31758_0904 YpsIP31758_0904 1086644 1086964 - conserved hypothetical protein identified by similarity to GB:CAE92888.1 gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0904 YpsIP31758_0905 YpsIP31758_0905 YpsIP31758_0905 1086964 1087644 - transcriptional regulator%2C PadR family identified by match to protein family HMM PF03551 gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0905 YpsIP31758_0906 YpsIP31758_0906 YpsIP31758_0906 1088087 1088944 - putative lipoprotein gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0906 YpsIP31758_0907 YpsIP31758_0907 YpsIP31758_0907 1089320 1089838 - hypothetical protein identified by glimmer%3B putative gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0907 YpsIP31758_0908 YpsIP31758_0908 YpsIP31758_0908 1090513 1090629 + hypothetical protein identified by glimmer%3B putative gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0908 YpsIP31758_0909 YpsIP31758_0909 rbsB1 rbsB1 1090788 1091789 - ribose ABC transporter%2C periplasmic ribose-binding protein identified by similarity to SP:P49308%3B match to protein family HMM PF00532 gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0909 YpsIP31758_0910 YpsIP31758_0910 YpsIP31758_0910 1092078 1092203 + hypothetical protein identified by glimmer%3B putative gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0910 YpsIP31758_0911 YpsIP31758_0911 rbsC1 rbsC1 1092223 1093251 - ribose ABC transporter%2C permease protein identified by similarity to SP:P36948%3B match to protein family HMM PF02653 gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0911 YpsIP31758_0912 YpsIP31758_0912 rbsA1 rbsA1 1093298 1094806 - ribose ABC transporter%2C ATP-binding protein identified by similarity to SP:P04983%3B match to protein family HMM PF00005 gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0912 YpsIP31758_0913 YpsIP31758_0913 malK1 malK1 1095345 1096451 - maltose/maltodextrin ABC transporter%2C ATP-binding protein identified by similarity to SP:P19566%3B match to protein family HMM PF00005%3B match to protein family HMM PF03459 gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0913 YpsIP31758_0914 YpsIP31758_0914 malE1 malE1 1096814 1098049 + maltose/maltodextrin ABC transporter%2C periplasmic maltose/maltodextrin-binding protein identified by match to protein family HMM PF01547 gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0914 YpsIP31758_0915 YpsIP31758_0915 YpsIP31758_0915 1098209 1099516 + ABC maltose/maltodextrin transporter%2C permease subunit identified by match to protein family HMM PF00528 gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0915 YpsIP31758_0916 YpsIP31758_0916 YpsIP31758_0916 1099528 1100379 + ABC maltose/maltodextrin transporter%2C permease subunit identified by match to protein family HMM PF00528 gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0916 YpsIP31758_0917 YpsIP31758_0917 YpsIP31758_0917 1100384 1101586 + glycosyl hydrolase%2C family 53 identified by match to protein family HMM PF07745 gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0917 YpsIP31758_0918 YpsIP31758_0918 YpsIP31758_0918 1101637 1103697 + beta-galactosidase identified by match to protein family HMM PF02449 gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0918 YpsIP31758_0919 YpsIP31758_0919 YpsIP31758_0919 1103809 1104120 + PTS system%2C EIIB component identified by match to protein family HMM PF00367 gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0919 YpsIP31758_0920 YpsIP31758_0920 YpsIP31758_0920 1104525 1105784 - porin%2C LamB family identified by match to protein family HMM PF02264 gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0920 YpsIP31758_0921 YpsIP31758_0921 YpsIP31758_0921 1105916 1106035 + hypothetical protein identified by glimmer%3B putative gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0921 YpsIP31758_0922 YpsIP31758_0922 YpsIP31758_0922 1106056 1107129 + sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0922 YpsIP31758_0923 YpsIP31758_0923 YpsIP31758_0923 1107189 1107305 - hypothetical protein identified by glimmer%3B putative gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0923 YpsIP31758_0924 YpsIP31758_0924 YpsIP31758_0924 1107442 1109817 - glycosyl hydrolase%2C family 31 protein identified by match to protein family HMM PF01055 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0924 YpsIP31758_0925 YpsIP31758_0925 YpsIP31758_0925 1109786 1109902 + hypothetical protein identified by glimmer%3B putative gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0925 YpsIP31758_0926 YpsIP31758_0926 YpsIP31758_0926 1109966 1111273 - putative hexuronate transporter identified by similarity to OMNI:NTL01SF2938%3B match to protein family HMM PF07690 gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0926 YpsIP31758_0927 YpsIP31758_0927 YpsIP31758_0927 1111667 1112749 + sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0927 YpsIP31758_0928 YpsIP31758_0928 YpsIP31758_0928 1112990 1113568 - DJ-1/PfpI family protein identified by match to protein family HMM PF01965 gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0928 YpsIP31758_0929 YpsIP31758_0929 YpsIP31758_0929 1113592 1114446 - class II aldolase%2C tagatose bisphosphate family identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01858 gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0929 YpsIP31758_0930 YpsIP31758_0930 YpsIP31758_0930 1114557 1116044 - conserved hypothetical protein identified by similarity to GB:CAC89690.1 gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0930 YpsIP31758_0931 YpsIP31758_0931 YpsIP31758_0931 1116167 1117774 - sulfatase identified by match to protein family HMM PF00884 gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0931 YpsIP31758_0932 YpsIP31758_0932 YpsIP31758_0932 1117795 1119021 - putative sulfatase regulator identified by similarity to SP:P25550%3B match to protein family HMM PF04055 gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0932 YpsIP31758_0933 YpsIP31758_0933 YpsIP31758_0933 1119452 1120510 - glycosyl hydrolase%2C family 88 identified by match to protein family HMM PF07470 gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0933 YpsIP31758_0934 YpsIP31758_0934 YpsIP31758_0934 1119270 1119455 + hypothetical protein identified by glimmer%3B putative gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0934 YpsIP31758_0935 YpsIP31758_0935 kduD2 kduD2 1120526 1121281 - 2-deoxy-D-gluconate 3-dehydrogenase identified by similarity to SP:P37769%3B match to protein family HMM PF00106%3B match to protein family HMM TIGR01832 gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0935 YpsIP31758_0936 YpsIP31758_0936 YpsIP31758_0936 1121477 1122643 - putative N-acetylgalactosamine-6-phosphate deacetylase identified by similarity to GB:AAF81087.1%3B match to protein family HMM PF01979%3B match to protein family HMM TIGR00221 gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0936 YpsIP31758_0937 YpsIP31758_0937 agaF agaF 1122646 1123086 - PTS system%2C N-acetylgalactosamine-specific IIA component identified by similarity to GB:AAF81086.1%3B match to protein family HMM PF03610 gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0937 YpsIP31758_0938 YpsIP31758_0938 agaE agaE 1123172 1124062 - PTS system%2C N-acetylgalactosamine-specific IID component identified by similarity to SP:P42911%3B match to protein family HMM PF03613 gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0938 YpsIP31758_0939 YpsIP31758_0939 agaW agaW 1124052 1124840 - PTS system%2C N-acetylgalactosamine-specific IIC component identified by similarity to SP:P42910%3B match to protein family HMM PF03609 gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0939 YpsIP31758_0940 YpsIP31758_0940 agaV agaV 1124887 1125384 - PTS system%2C N-acetylgalactosamine-specific phosphotransferase enzyme IIB component2 identified by similarity to SP:P42904%3B match to protein family HMM PF03830%3B match to protein family HMM TIGR00854 gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0940 YpsIP31758_0941 YpsIP31758_0941 YpsIP31758_0941 1125402 1126568 - putative tagatose-6-phosphate ketose/aldose isomerase AgaS identified by similarity to SP:P42907%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR02815 gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0941 YpsIP31758_0942 YpsIP31758_0942 agaZ agaZ 1126565 1127863 - D-tagatose-bisphosphate aldolase%2C class II%2C non-catalytic subunit identified by similarity to SP:P42903%3B match to protein family HMM PF08013%3B match to protein family HMM TIGR02810 gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0942 YpsIP31758_0943 YpsIP31758_0943 agaR agaR 1127913 1128689 - transcriptional repressor AgaR identified by similarity to SP:P0ACK2%3B match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0943 YpsIP31758_0944 YpsIP31758_0944 YpsIP31758_0944 1128972 1129100 - hypothetical protein identified by glimmer%3B putative gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0944 YpsIP31758_0945 YpsIP31758_0945 YpsIP31758_0945 1129529 1131082 + sulfatase identified by match to protein family HMM PF00884%3B match to protein family HMM TIGR01409 gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0945 YpsIP31758_0946 YpsIP31758_0946 YpsIP31758_0946 1131522 1134596 - polysaccharide lyase%2C family 8 identified by match to protein family HMM PF02278 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0946 YpsIP31758_0947 YpsIP31758_0947 YpsIP31758_0947 1134705 1136891 - putative autotransporter protein identified by match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0947 YpsIP31758_0948 YpsIP31758_0948 YpsIP31758_0948 1137006 1137956 - hypothetical protein identified by glimmer%3B putative gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0948 YpsIP31758_0949 YpsIP31758_0949 YpsIP31758_0949 1138559 1138747 - hypothetical protein identified by glimmer%3B putative gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0949 YpsIP31758_0950 YpsIP31758_0950 YpsIP31758_0950 1139320 1139997 + putative carbonic anhydrase identified by match to protein family HMM PF00484 gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0950 YpsIP31758_0951 YpsIP31758_0951 YpsIP31758_0951 1140740 1141156 + conserved domain protein identified by similarity to GB:CAH22305.1 gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0951 YpsIP31758_0952 YpsIP31758_0952 YpsIP31758_0952 1141224 1141727 + general secretion pathway protein C-like protein identified by similarity to RF:NP_404441.1 gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0952 YpsIP31758_0953 YpsIP31758_0953 gspD gspD 1141808 1143730 + general secretion pathway protein D identified by match to protein family HMM PF00263%3B match to protein family HMM PF03958%3B match to protein family HMM TIGR02517 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0953 YpsIP31758_0954 YpsIP31758_0954 gspE gspE 1143727 1145238 + general secretory pathway protein E identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR02533 gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0954 YpsIP31758_0955 YpsIP31758_0955 gspF gspF 1145225 1146427 + general secretion pathway protein F identified by match to protein family HMM PF00482%3B match to protein family HMM TIGR02120 gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0955 YpsIP31758_0956 YpsIP31758_0956 gspG gspG 1146447 1146884 + general secretion pathway protein G identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR01710%3B match to protein family HMM TIGR02532 gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0956 YpsIP31758_0957 YpsIP31758_0957 gspI gspI 1147469 1147813 + general secretion pathway protein I identified by match to protein family HMM PF02501%3B match to protein family HMM TIGR01707 gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0957 YpsIP31758_0958 YpsIP31758_0958 gspJ gspJ 1147806 1148402 + general secretion pathway protein J identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR01711%3B match to protein family HMM TIGR02532 gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0958 YpsIP31758_0959 YpsIP31758_0959 gspK gspK 1148411 1149367 + general secretion pathway protein K identified by similarity to SP:P31706%3B match to protein family HMM PF03934 gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0959 YpsIP31758_0960 YpsIP31758_0960 gspL gspL 1149372 1150541 + general secretion pathway protein L identified by match to protein family HMM PF05134%3B match to protein family HMM TIGR01709 gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0960 YpsIP31758_0961 YpsIP31758_0961 YpsIP31758_0961 1150538 1150999 + conserved hypothetical protein identified by similarity to RF:NP_994155.1 gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0961 YpsIP31758_0962 YpsIP31758_0962 YpsIP31758_0962 1151851 1152216 - putative lipoprotein identified by similarity to GB:AAM86744.1 gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0962 YpsIP31758_0963 YpsIP31758_0963 YpsIP31758_0963 1151034 1151867 + type IV prepilin peptidase identified by match to protein family HMM PF01478%3B match to protein family HMM PF06750 gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0963 YpsIP31758_0964 YpsIP31758_0964 YpsIP31758_0964 1152502 1153161 + transcriptional regulator identified by match to protein family HMM PF00486 gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0964 YpsIP31758_0965 YpsIP31758_0965 YpsIP31758_0965 1153218 1153619 + hypothetical protein identified by glimmer%3B putative gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0965 YpsIP31758_0966 YpsIP31758_0966 YpsIP31758_0966 1155451 1156086 - conserved hypothetical protein gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0966 YpsIP31758_0967 YpsIP31758_0967 tsr tsr 1153774 1155465 + methyl-accepting chemotaxis protein identified by similarity to SP:P02942%3B match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0967 YpsIP31758_0968 YpsIP31758_0968 YpsIP31758_0968 1156199 1157086 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0968 YpsIP31758_0969 YpsIP31758_0969 YpsIP31758_0969 1157193 1158101 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0969 YpsIP31758_0970 YpsIP31758_0970 lysR lysR 1159627 1160568 - transcriptional activator protein LysR identified by similarity to SP:P03030%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0970 YpsIP31758_0971 YpsIP31758_0971 YpsIP31758_0971 1158470 1159630 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0971 YpsIP31758_0972 YpsIP31758_0972 galR galR 1162042 1163064 - transcriptional regulator GalR identified by similarity to SP:P03024%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0972 YpsIP31758_0973 YpsIP31758_0973 lysA lysA 1160783 1162045 + diaminopimelate decarboxylase identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01048 gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0973 YpsIP31758_0974 YpsIP31758_0974 YpsIP31758_0974 1163414 1165675 + molybdopterin oxidoreductase identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568 gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0974 YpsIP31758_0975 YpsIP31758_0975 aas aas 1166123 1168279 + 2-acylglycerophosphoethanolamine acyltransferase/acyl-(acyl-carrier-protein) synthetase identified by similarity to SP:P31119%3B match to protein family HMM PF00501%3B match to protein family HMM PF01553 gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0975 YpsIP31758_0976 YpsIP31758_0976 YpsIP31758_0976 1168276 1169496 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0976 YpsIP31758_0977 YpsIP31758_0977 YpsIP31758_0977 1169525 1169758 - conserved hypothetical protein identified by similarity to RF:NP_994171.1 gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0977 YpsIP31758_0978 YpsIP31758_0978 YpsIP31758_0978 1169837 1170088 + hypothetical protein identified by glimmer%3B putative gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0978 YpsIP31758_0979 YpsIP31758_0979 tas tas 1170465 1171505 - Tas protein identified by similarity to SP:P0A9T4%3B match to protein family HMM PF00248 gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0979 YpsIP31758_0980 YpsIP31758_0980 mutH mutH 1171876 1172562 - DNA mismatch repair endonuclease MutH identified by similarity to SP:P06722%3B match to protein family HMM PF02976%3B match to protein family HMM TIGR02248 gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0980 YpsIP31758_0981 YpsIP31758_0981 nudH nudH 1173259 1173786 + (di)nucleoside polyphosphate hydrolase identified by similarity to SP:P0A776%3B match to protein family HMM PF00293 gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0981 YpsIP31758_0982 YpsIP31758_0982 ptsP ptsP 1173799 1176045 + phosphoenolpyruvate-protein phosphotransferase PtsP identified by similarity to SP:P37177%3B match to protein family HMM PF00391%3B match to protein family HMM PF01590%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417 gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0982 YpsIP31758_0983 YpsIP31758_0983 lgt lgt 1176296 1177168 + prolipoprotein diacylglyceryl transferase identified by match to protein family HMM PF01790%3B match to protein family HMM TIGR00544 gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0983 YpsIP31758_0984 YpsIP31758_0984 thyA thyA 1177175 1177969 + thymidylate synthase identified by match to protein family HMM PF00303 gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0984 YpsIP31758_0985 YpsIP31758_0985 YpsIP31758_0985 1178269 1178838 + prepilin-type N-terminal cleavage/methylation domain protein identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0985 YpsIP31758_0986 YpsIP31758_0986 YpsIP31758_0986 1178829 1179437 + putative prepilin peptidase dependent protein identified by similarity to SP:Q00517%3B match to protein family HMM TIGR02532 gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0986 YpsIP31758_0987 YpsIP31758_0987 YpsIP31758_0987 1179434 1179904 + conserved hypothetical protein identified by similarity to GB:AAN81863.1 gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0987 YpsIP31758_0988 YpsIP31758_0988 YpsIP31758_0988 1179892 1180302 + prepilin peptidase dependent protein-like protein gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0988 YpsIP31758_0989 YpsIP31758_0989 recC recC 1180437 1183808 + exodeoxyribonuclease V%2C gamma subunit identified by similarity to SP:P07648%3B match to protein family HMM PF04257%3B match to protein family HMM TIGR01450 gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0989 YpsIP31758_0990 YpsIP31758_0990 ptrA ptrA 1183890 1186778 + protease III identified by similarity to SP:P05458%3B match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0990 YpsIP31758_0991 YpsIP31758_0991 recB recB 1186775 1190437 + exodeoxyribonuclease V%2C beta subunit identified by similarity to SP:P08394%3B match to protein family HMM PF00580%3B match to protein family HMM TIGR00609 gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0991 YpsIP31758_0992 YpsIP31758_0992 recD recD 1190434 1192407 + exodeoxyribonuclease V%2C alpha subunit identified by similarity to SP:P04993%3B match to protein family HMM TIGR01447 gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0992 YpsIP31758_0993 YpsIP31758_0993 argA argA 1192562 1193887 - amino-acid N-acetyltransferase identified by similarity to SP:P0A6C5%3B match to protein family HMM PF00583%3B match to protein family HMM PF00696%3B match to protein family HMM TIGR01890 gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0993 YpsIP31758_0994 YpsIP31758_0994 YpsIP31758_0994 1194123 1195373 + N-acetylmuramoyl-L-alanine amidase%2C family 3 identified by match to protein family HMM PF01520 gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0994 YpsIP31758_0995 YpsIP31758_0995 mltA mltA 1196275 1197447 + membrane-bound lytic murein transglycosylase A identified by similarity to SP:P0A935%3B match to protein family HMM PF03562%3B match to protein family HMM PF06725 gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0995 YpsIP31758_0996 YpsIP31758_0996 YpsIP31758_0996 1197590 1198417 + thiF family protein identified by match to protein family HMM PF00899 gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0996 YpsIP31758_0997 YpsIP31758_0997 YpsIP31758_0997 1198467 1198907 - Fe-S metabolism associated protein identified by match to protein family HMM PF02657%3B match to protein family HMM TIGR03391 gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0997 YpsIP31758_0998 YpsIP31758_0998 csdA csdA 1199043 1200248 - cysteine sulfinate desulfinase identified by similarity to SP:Q46925%3B match to protein family HMM PF00266%3B match to protein family HMM TIGR03392 gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0998 YpsIP31758_0999 YpsIP31758_0999 gcvA gcvA 1200946 1201863 + glycine cleavage system transcriptional activator identified by similarity to SP:P0A9F6%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_0999 YpsIP31758_1000 YpsIP31758_1000 YpsIP31758_1000 1202029 1202424 + conserved hypothetical protein identified by similarity to GB:CAH22254.1%3B match to protein family HMM PF04241 gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1000 YpsIP31758_1001 YpsIP31758_1001 YpsIP31758_1001 1202417 1203523 + conserved hypothetical protein identified by similarity to GB:CAC89873.1 gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1001 YpsIP31758_1002 YpsIP31758_1002 xni xni 1203774 1204529 - exodeoxyribonuclease-9 identified by similarity to SP:P38506%3B match to protein family HMM PF01367%3B match to protein family HMM PF02739 gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1002 YpsIP31758_1003 YpsIP31758_1003 YpsIP31758_1003 1204789 1206153 - putative decarboxylase identified by match to protein family HMM PF03641 gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1003 YpsIP31758_1004 YpsIP31758_1004 queF queF 1206306 1207151 - 7-cyano-7-deazaguanine reductase identified by similarity to SP:Q46920%3B match to protein family HMM PF01227%3B match to protein family HMM TIGR03138 gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1004 YpsIP31758_1005 YpsIP31758_1005 YpsIP31758_1005 1207283 1207834 + syd protein identified by match to protein family HMM PF07348 gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1005 YpsIP31758_1006 YpsIP31758_1006 YpsIP31758_1006 1208542 1208874 + conserved hypothetical protein identified by similarity to GB:AAS62998.1%3B match to protein family HMM PF04287 gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1006 YpsIP31758_1007 YpsIP31758_1007 YpsIP31758_1007 1208874 1209647 + tRNA pseudouridine synthase identified by match to protein family HMM PF00849 gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1007 YpsIP31758_1008 YpsIP31758_1008 YpsIP31758_1008 1209675 1210124 + putative flavodoxin identified by match to protein family HMM PF00258 gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1008 YpsIP31758_1009 YpsIP31758_1009 YpsIP31758_1009 1210214 1210603 - conserved hypothetical protein identified by similarity to SP:Q667I5 gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1009 YpsIP31758_1010 YpsIP31758_1010 dapD dapD 1210727 1211551 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase identified by match to protein family HMM TIGR00965 gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1010 YpsIP31758_1011 YpsIP31758_1011 glnD glnD 1211726 1214407 - protein-P-II uridylyltransferase identified by match to protein family HMM PF01842%3B match to protein family HMM PF01909%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR01693 gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1011 YpsIP31758_1012 YpsIP31758_1012 map1 map1 1214467 1215258 - methionine aminopeptidase%2C type I identified by match to protein family HMM PF00557%3B match to protein family HMM TIGR00500 gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1012 YpsIP31758_1013 YpsIP31758_1013 rpsB rpsB 1215693 1216418 + ribosomal protein S2 identified by match to protein family HMM PF00318%3B match to protein family HMM TIGR01011 gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1013 YpsIP31758_1014 YpsIP31758_1014 tsf tsf 1216546 1217403 + translation elongation factor Ts identified by match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116 gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1014 YpsIP31758_1015 YpsIP31758_1015 pyrH pyrH 1217612 1218337 + uridylate kinase identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR02075 gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1015 YpsIP31758_1016 YpsIP31758_1016 frr frr 1218473 1219030 + ribosome recycling factor identified by match to protein family HMM PF01765%3B match to protein family HMM TIGR00496 gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1016 YpsIP31758_1017 YpsIP31758_1017 dxr dxr 1219244 1220440 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase identified by match to protein family HMM PF02670%3B match to protein family HMM TIGR00243 gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1017 YpsIP31758_1018 YpsIP31758_1018 uppS uppS 1220663 1221421 + undecaprenyl diphosphate synthase identified by match to protein family HMM PF01255%3B match to protein family HMM TIGR00055 gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1018 YpsIP31758_1019 YpsIP31758_1019 cdsA1 cdsA1 1221431 1222279 + phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1019 YpsIP31758_1020 YpsIP31758_1020 rseP rseP 1222308 1223663 + RIP metalloprotease RseP identified by match to protein family HMM PF00595%3B match to protein family HMM PF02163%3B match to protein family HMM TIGR00054 gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1020 YpsIP31758_1021 YpsIP31758_1021 YpsIP31758_1021 1223700 1226087 + surface antigen/outer membrane protein%2C OMP85 family identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244%3B match to protein family HMM TIGR03303 gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1021 YpsIP31758_1022 YpsIP31758_1022 skp skp 1226245 1226742 + chaperone protein Skp ompH%3B identified by match to protein family HMM PF03938 gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1022 YpsIP31758_1023 YpsIP31758_1023 lpxD lpxD 1226746 1227768 + UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase identified by match to protein family HMM PF00132%3B match to protein family HMM PF04613%3B match to protein family HMM TIGR01853 gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1023 YpsIP31758_1024 YpsIP31758_1024 fabZ fabZ 1227926 1228456 + beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ identified by match to protein family HMM PF07977%3B match to protein family HMM TIGR01750 gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1024 YpsIP31758_1025 YpsIP31758_1025 lpxA lpxA 1228460 1229248 + acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase identified by match to protein family HMM PF00132%3B match to protein family HMM TIGR01852 gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1025 YpsIP31758_1026 YpsIP31758_1026 lpxB lpxB 1229252 1230436 + lipid-A-disaccharide synthase identified by match to protein family HMM PF02684%3B match to protein family HMM TIGR00215 gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1026 YpsIP31758_1027 YpsIP31758_1027 rnhB rnhB 1230433 1231029 + ribonuclease HII identified by match to protein family HMM PF01351 gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1027 YpsIP31758_1028 YpsIP31758_1028 dnaE dnaE 1231192 1234674 + DNA polymerase III%2C alpha subunit identified by similarity to SP:P10443%3B match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1028 YpsIP31758_1029 YpsIP31758_1029 accA accA 1234687 1235646 + acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513 gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1029 YpsIP31758_1030 YpsIP31758_1030 YpsIP31758_1030 1235830 1236228 + glyoxalase family protein identified by match to protein family HMM PF00903 gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1030 YpsIP31758_1031 YpsIP31758_1031 tilS tilS 1236257 1237612 + tRNA(Ile)-lysidine synthase identified by similarity to SP:P52097%3B match to protein family HMM PF01171%3B match to protein family HMM TIGR02432%3B match to protein family HMM TIGR02433 gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1031 YpsIP31758_1032 YpsIP31758_1032 YpsIP31758_1032 1237868 1238185 + cytochrome c family protein identified by match to protein family HMM PF00034 gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1032 YpsIP31758_1033 YpsIP31758_1033 YpsIP31758_1033 1238450 1238704 - Rof protein identified by similarity to SP:P52098%3B match to protein family HMM PF07073 gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1033 YpsIP31758_1034 YpsIP31758_1034 YpsIP31758_1034 1238697 1238897 - conserved hypothetical protein identified by similarity to SP:Q8ZH47%3B match to protein family HMM PF06786 gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1034 YpsIP31758_1035 YpsIP31758_1035 YpsIP31758_1035 1239139 1239687 + conserved hypothetical protein identified by similarity to SP:P0AA98%3B match to protein family HMM PF07152 gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1035 YpsIP31758_1036 YpsIP31758_1036 YpsIP31758_1036 1239666 1240106 + peptidyl-tRNA hydrolase domain protein identified by match to protein family HMM PF00472 gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1036 YpsIP31758_1037 YpsIP31758_1037 cutF cutF 1240191 1240874 + copper homeostasis protein CutF identified by similarity to SP:P40710%3B match to protein family HMM PF04170 gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1037 YpsIP31758_1038 YpsIP31758_1038 proS proS 1241008 1242726 - prolyl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF04073%3B match to protein family HMM TIGR00409 gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1038 YpsIP31758_1039 YpsIP31758_1039 YpsIP31758_1039 1242830 1243537 - conserved hypothetical protein TIGR00104 identified by similarity to GB:CAH22215.1%3B match to protein family HMM PF01980%3B match to protein family HMM TIGR00104 gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1039 YpsIP31758_1040 YpsIP31758_1040 YpsIP31758_1040 1243534 1243941 - putative lipoprotein gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1040 YpsIP31758_1041 YpsIP31758_1041 metQ metQ 1244059 1244874 - D-methionine ABC transporter%2C periplasmic D-methionine-binding protein identified by similarity to SP:P28635%3B match to protein family HMM PF03180%3B match to protein family HMM TIGR00363 gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1041 YpsIP31758_1042 YpsIP31758_1042 metI metI 1244938 1245591 - D-methionine ABC transporter%2C permease protein identified by similarity to SP:P31547%3B match to protein family HMM PF00528 gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1042 YpsIP31758_1043 YpsIP31758_1043 metN metN 1245584 1246615 - D-methionine ABC transporter%2C ATP-binding protein identified by similarity to SP:P30750%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02314 gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1043 YpsIP31758_1044 YpsIP31758_1044 gmhB gmhB 1246802 1247368 + D%2CD-heptose 1%2C7-bisphosphate phosphatase identified by match to protein family HMM TIGR00213%3B match to protein family HMM TIGR01656%3B match to protein family HMM TIGR01662 gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1044 YpsIP31758_1048 YpsIP31758_1048 dkgB dkgB 1253586 1254389 + 2%2C5-diketo-D-gluconic acid reductase B identified by similarity to SP:P30863%3B match to protein family HMM PF00248 gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1048 YpsIP31758_1049 YpsIP31758_1049 YpsIP31758_1049 1254424 1254888 + hypothetical protein identified by glimmer%3B putative gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1049 YpsIP31758_1050 YpsIP31758_1050 YpsIP31758_1050 1255249 1256031 + endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1050 YpsIP31758_1051 YpsIP31758_1051 mltD mltD 1256074 1257453 - membrane-bound lytic murein transglycosylase D identified by similarity to SP:P23931%3B match to protein family HMM PF01464%3B match to protein family HMM PF01476%3B match to protein family HMM PF06474 gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1051 YpsIP31758_1052 YpsIP31758_1052 YpsIP31758_1052 1257525 1258280 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753%3B match to protein family HMM TIGR03413 gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1052 YpsIP31758_1053 YpsIP31758_1053 YpsIP31758_1053 1258325 1259044 + putative methyltransferase gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1053 YpsIP31758_1054 YpsIP31758_1054 rnhA rnhA 1259099 1259563 - RNase H identified by match to protein family HMM PF00075 gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1054 YpsIP31758_1055 YpsIP31758_1055 dnaQ dnaQ 1259633 1260397 + DNA polymerase III%2C epsilon subunit identified by similarity to SP:P03007%3B match to protein family HMM PF00929%3B match to protein family HMM TIGR00573%3B match to protein family HMM TIGR01406 gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1055 YpsIP31758_1056 YpsIP31758_1056 YpsIP31758_1056 1260643 1262127 - permease%2C cytosine/purines%2C uracil%2C thiamine%2C allantoin family identified by match to protein family HMM PF02133 gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1056 YpsIP31758_1057 YpsIP31758_1057 YpsIP31758_1057 1262321 1262455 + hypothetical protein identified by glimmer%3B putative gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1057 YpsIP31758_1058 YpsIP31758_1058 YpsIP31758_1058 1262448 1263398 + polysaccharide deacetylase family protein identified by match to protein family HMM PF01522%3B match to protein family HMM TIGR03212 gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1058 YpsIP31758_1059 YpsIP31758_1059 proX proX 1263459 1264463 - glycine betaine/L-proline ABC transporter%2C periplasmic glycine betaine-binding protein identified by similarity to SP:P14177%3B match to protein family HMM PF04069 gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1059 YpsIP31758_1060 YpsIP31758_1060 proW proW 1264511 1265677 - glycine betaine/L-proline ABC transporter%2C permease protein identified by similarity to SP:P14176%3B match to protein family HMM PF00528 gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1060 YpsIP31758_1061 YpsIP31758_1061 proV proV 1265670 1266869 - glycine betaine/L-proline ABC transporter%2C ATP-binding protein identified by similarity to SP:P14175%3B match to protein family HMM PF00005%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01186 gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1061 YpsIP31758_1062 YpsIP31758_1062 YpsIP31758_1062 1267545 1268516 - ribonucleoside-diphosphate reductase%2C beta subunit identified by match to protein family HMM PF00268 gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1062 YpsIP31758_1063 YpsIP31758_1063 YpsIP31758_1063 1268605 1270755 - ribonucleoside-diphosphate reductase%2C alpha subunit identified by match to protein family HMM PF00317%3B match to protein family HMM PF02867%3B match to protein family HMM TIGR02506 gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1063 YpsIP31758_1064 YpsIP31758_1064 nrdI nrdI 1270737 1271141 - nrdI protein identified by match to protein family HMM PF07972%3B match to protein family HMM TIGR00333 gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1064 YpsIP31758_1065 YpsIP31758_1065 nrdH nrdH 1271155 1271391 - glutaredoxin-related protein NrdH identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR02194 gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1065 YpsIP31758_1066 YpsIP31758_1066 YpsIP31758_1066 1271913 1272278 + acid shock repeat protein identified by match to protein family HMM PF06392 gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1066 YpsIP31758_1067 YpsIP31758_1067 YpsIP31758_1067 1272757 1273092 + conserved hypothetical protein gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1067 YpsIP31758_1068 YpsIP31758_1068 YpsIP31758_1068 1273190 1273639 - conserved hypothetical protein identified by similarity to GB:AAS62658.1%3B match to protein family HMM PF06711 gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1068 YpsIP31758_1069 YpsIP31758_1069 YpsIP31758_1069 1273804 1274142 - conserved hypothetical protein identified by similarity to RF:ZP_00821790.1 gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1069 YpsIP31758_1070 YpsIP31758_1070 YpsIP31758_1070 1274650 1274862 + cold shock protein identified by similarity to SP:P0A981%3B match to protein family HMM PF00313 gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1070 YpsIP31758_1071 YpsIP31758_1071 yntA yntA 1275651 1277228 + nickel ABC transporter%2C periplasmic nickel-binding protein yntA is characterized Y. pseudotuberculosis gene_sym (PMID:12270829)%2C not an E. coli hypothetical gene_sym.%3B identified by similarity to GB:AAM46627.1%3B match to protein family HMM PF00496 gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1071 YpsIP31758_1072 YpsIP31758_1072 yntB yntB 1277228 1278196 + nickel ABC transporter%2C permease protein yntB is characterized Y. pseudotuberculosis gene_sym (PMID:12270829)%2C not an E. coli hypothetical gene_sym.%3B identified by similarity to GB:AAM46628.1%3B match to protein family HMM PF00528 gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1072 YpsIP31758_1073 YpsIP31758_1073 yntC yntC 1278193 1278999 + nickel ABC transporter%2C permease protein yntC is characterized Y. pseudotuberculosis gene_sym (PMID:12270829)%2C not an E. coli hypothetical gene_sym.%3B identified by similarity to GB:CAH22185.1%3B match to protein family HMM PF00528 gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1073 YpsIP31758_1074 YpsIP31758_1074 yntD yntD 1278999 1279805 + nickel ABC transporter%2C ATP-binding protein yntD is characterized Y. pseudotuberculosis gene_sym (PMID:12270829)%2C not an E. coli hypothetical gene_sym.%3B identified by similarity to GB:CAH22184.1%3B match to protein family HMM PF00005 gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1074 YpsIP31758_1075 YpsIP31758_1075 yntE yntE 1279798 1280463 + nickel ABC transporter%2C ATP-binding protein yntE is characterized Y. pseudotuberculosis gene_sym (PMID:12270829)%2C not an E. coli hypothetical gene_sym.%3B identified by similarity to GB:CAH22183.1%3B match to protein family HMM PF00005 gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1075 YpsIP31758_1076 YpsIP31758_1076 YpsIP31758_1076 1281119 1281286 - hypothetical protein identified by glimmer%3B putative gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1076 YpsIP31758_1077 YpsIP31758_1077 ureA ureA 1281662 1281964 + urease%2C gamma subunit identified by similarity to SP:P31496%3B match to protein family HMM PF00547%3B match to protein family HMM TIGR00193 gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1077 YpsIP31758_1078 YpsIP31758_1078 ureB ureB 1282017 1282451 + urease%2C beta subunit identified by match to protein family HMM PF00699%3B match to protein family HMM TIGR00192 gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1078 YpsIP31758_1079 YpsIP31758_1079 ureC ureC 1282541 1284259 + urease%2C alpha subunit identified by similarity to SP:P31494%3B match to protein family HMM PF00449%3B match to protein family HMM PF01979%3B match to protein family HMM TIGR01792 gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1079 YpsIP31758_1080 YpsIP31758_1080 ureE ureE 1284555 1285250 + urease accessory protein UreE identified by match to protein family HMM PF02814%3B match to protein family HMM PF05194 gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1080 YpsIP31758_1081 YpsIP31758_1081 ureF ureF 1285272 1285958 + urease accessory protein UreF identified by match to protein family HMM PF01730 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1081 YpsIP31758_1082 YpsIP31758_1082 ureG ureG 1286084 1286746 + urease accessory protein UreG identified by similarity to SP:P42871%3B match to protein family HMM PF02492%3B match to protein family HMM TIGR00101 gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1082 YpsIP31758_1083 YpsIP31758_1083 ureD ureD 1286743 1287708 + urease accessory protein UreD identified by match to protein family HMM PF01774 gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1083 YpsIP31758_1084 YpsIP31758_1084 yut yut 1288087 1289079 + urea transporter identified by similarity to GB:CAH22175.1%3B match to protein family HMM PF03253%3B match to protein family HMM TIGR03441 gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1084 YpsIP31758_1085 YpsIP31758_1085 ureH ureH 1289228 1290286 + high-affinity nickel transport protein identified by similarity to GB:AAM46633.1%3B match to protein family HMM PF03824%3B match to protein family HMM TIGR00802 gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1085 YpsIP31758_1086 YpsIP31758_1086 YpsIP31758_1086 1290451 1290780 - conserved hypothetical protein gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1086 YpsIP31758_1087 YpsIP31758_1087 kch kch 1291399 1292574 + potassium channel protein Kch identified by similarity to SP:P31069%3B match to protein family HMM PF02254%3B match to protein family HMM PF07885 gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1087 YpsIP31758_1088 YpsIP31758_1088 YpsIP31758_1088 1292672 1293076 - CrcB-like protein identified by similarity to SP:Q8YI11%3B match to protein family HMM PF02537 gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1088 YpsIP31758_1089 YpsIP31758_1089 YpsIP31758_1089 1293092 1293454 - CrcB-like protein identified by match to protein family HMM PF02537%3B match to protein family HMM TIGR00494 gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1089 YpsIP31758_1090 YpsIP31758_1090 YpsIP31758_1090 1293561 1293740 - hypothetical protein identified by glimmer%3B putative gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1090 YpsIP31758_1091 YpsIP31758_1091 chbB chbB 1294513 1294830 + PTS system%2C cellobiose-specific IIB component identified by similarity to SP:P69795%3B match to protein family HMM PF02302 gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1091 YpsIP31758_1092 YpsIP31758_1092 chbC chbC 1294841 1296202 + PTS system%2C cellobiose-specific IIC component identified by match to protein family HMM PF02378%3B match to protein family HMM TIGR00359%3B match to protein family HMM TIGR00410 gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1092 YpsIP31758_1093 YpsIP31758_1093 chbA chbA 1296369 1296716 + PTS system%2C cellobiose specific IIA subunit identified by match to protein family HMM PF02255 gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1093 YpsIP31758_1094 YpsIP31758_1094 chbR chbR 1296765 1297595 + transcriptional regulator ChbR identified by similarity to SP:P17410%3B match to protein family HMM PF00165%3B match to protein family HMM PF07883 gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1094 YpsIP31758_1095 YpsIP31758_1095 chbG chbG 1297647 1298408 + UPF0249 protein ChbG identified by match to protein family HMM PF04794 gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1095 YpsIP31758_1096 YpsIP31758_1096 YpsIP31758_1096 1298415 1298591 - putative membrane protein gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1096 YpsIP31758_1097 YpsIP31758_1097 YpsIP31758_1097 1299122 1299238 - hypothetical protein identified by glimmer%3B putative gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1097 YpsIP31758_1098 YpsIP31758_1098 seqA seqA 1299568 1300095 + protein SeqA identified by match to protein family HMM PF03925 gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1098 YpsIP31758_1099 YpsIP31758_1099 pgm pgm 1300168 1301811 + phosphoglucomutase%2C alpha-D-glucose phosphate-specific identified by similarity to SP:P36938%3B match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880%3B match to protein family HMM TIGR01132 gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1099 YpsIP31758_1100 YpsIP31758_1100 YpsIP31758_1100 1302185 1302427 + hypothetical protein identified by glimmer%3B putative gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1100 YpsIP31758_1101 YpsIP31758_1101 YpsIP31758_1101 1302555 1302983 - integral membrane protein identified by match to protein family HMM PF00892%3B match to protein family HMM PF03151 gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1101 YpsIP31758_1102 YpsIP31758_1102 kdpE kdpE 1303078 1303707 - KDP operon transcriptional regulatory protein KdpE identified by similarity to SP:P21866%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1102 YpsIP31758_1103 YpsIP31758_1103 kdpD kdpD 1304629 1307355 - sensor protein KdpD identified by similarity to SP:P21865%3B match to protein family HMM PF00512%3B match to protein family HMM PF00582%3B match to protein family HMM PF02518%3B match to protein family HMM PF02702 gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1103 YpsIP31758_1104 YpsIP31758_1104 kdpC kdpC 1307365 1307967 - K+-transporting ATPase%2C C subunit identified by similarity to SP:P03961%3B match to protein family HMM PF02669%3B match to protein family HMM TIGR00681 gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1104 YpsIP31758_1105 YpsIP31758_1105 YpsIP31758_1105 1307966 1308079 + hypothetical protein identified by glimmer%3B putative gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1105 YpsIP31758_1106 YpsIP31758_1106 kdpB kdpB 1308179 1310245 - K+-transporting ATPase%2C B subunit identified by similarity to GB:AAB96336.1%3B match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01497 gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1106 YpsIP31758_1107 YpsIP31758_1107 YpsIP31758_1107 1310217 1310342 - hypothetical protein identified by glimmer%3B putative gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1107 YpsIP31758_1108 YpsIP31758_1108 kdpA kdpA 1310339 1312027 - K+-transporting ATPase%2C A subunit identified by similarity to SP:P03959%3B match to protein family HMM PF03814%3B match to protein family HMM TIGR00680 gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1108 YpsIP31758_1109 YpsIP31758_1109 YpsIP31758_1109 1312522 1312728 + putative membrane protein gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1109 YpsIP31758_1110 YpsIP31758_1110 YpsIP31758_1110 1312812 1312928 + hypothetical protein identified by glimmer%3B putative gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1110 YpsIP31758_1111 YpsIP31758_1111 YpsIP31758_1111 1313079 1313585 + conserved hypothetical protein gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1111 YpsIP31758_1112 YpsIP31758_1112 phrB phrB 1313691 1315154 + deoxyribodipyrimidine photolyase identified by similarity to SP:P25078%3B match to protein family HMM PF00875%3B match to protein family HMM PF03441 gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1112 YpsIP31758_1113 YpsIP31758_1113 cpdP cpdP 1315145 1316182 + 3'%2C5'-cyclic-nucleotide phosphodiesterase identified by similarity to SP:Q56686%3B match to protein family HMM PF02112 gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1113 YpsIP31758_1114 YpsIP31758_1114 YpsIP31758_1114 1316322 1317068 + conserved hypothetical protein TIGR00486 identified by similarity to SP:P75743%3B match to protein family HMM PF01784%3B match to protein family HMM TIGR00486 gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1114 YpsIP31758_1115 YpsIP31758_1115 YpsIP31758_1115 1317688 1318344 + conserved hypothetical protein TIGR00370 identified by similarity to SP:P0AAV4%3B match to protein family HMM PF02682%3B match to protein family HMM TIGR00370 gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1115 YpsIP31758_1116 YpsIP31758_1116 YpsIP31758_1116 1318338 1319288 + biotin-dependent carboxylase uncharacterized domain protein identified by match to protein family HMM PF02626%3B match to protein family HMM TIGR00724 gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1116 YpsIP31758_1117 YpsIP31758_1117 YpsIP31758_1117 1319285 1320022 + LamB/YcsF family protein identified by match to protein family HMM PF03746 gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1117 YpsIP31758_1118 YpsIP31758_1118 YpsIP31758_1118 1320107 1320838 + putative membrane protein identified by match to protein family HMM PF06149 gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1118 YpsIP31758_1119 YpsIP31758_1119 YpsIP31758_1119 1320835 1321854 + putative membrane protein identified by match to protein family HMM PF06166 gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1119 YpsIP31758_1120 YpsIP31758_1120 pcp pcp 1321864 1322511 + pyroglutamyl-peptidase I identified by match to protein family HMM PF01470%3B match to protein family HMM TIGR00504 gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1120 YpsIP31758_1121 YpsIP31758_1121 ung ung 1322602 1323288 - uracil-DNA glycosylase identified by similarity to SP:P12295%3B match to protein family HMM PF03167%3B match to protein family HMM TIGR00628 gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1121 YpsIP31758_1122 YpsIP31758_1122 grcA grcA 1323641 1324024 + autonomous glycyl radical cofactor identified by similarity to SP:P68066%3B match to protein family HMM PF01228 gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1122 YpsIP31758_1123 YpsIP31758_1123 YpsIP31758_1123 1324203 1325165 + lipase family protein gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1123 YpsIP31758_1124 YpsIP31758_1124 YpsIP31758_1124 1325131 1325262 + hypothetical protein identified by glimmer%3B putative gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1124 YpsIP31758_1125 YpsIP31758_1125 YpsIP31758_1125 1325249 1325905 + Ankyrin repeat protein identified by match to protein family HMM PF00023 gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1125 YpsIP31758_1126 YpsIP31758_1126 srmB srmB 1326036 1327361 - ATP-dependent RNA helicase SrmB identified by similarity to SP:P21507%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1126 YpsIP31758_1127 YpsIP31758_1127 YpsIP31758_1127 1327613 1328359 + methyltransferase family protein identified by match to protein family HMM PF05175 gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1127 YpsIP31758_1128 YpsIP31758_1128 nadB nadB 1328642 1330243 - L-aspartate oxidase identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00551 gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1128 YpsIP31758_1129 YpsIP31758_1129 rpoE rpoE 1330467 1331042 + RNA polymerase sigma factor RpoE identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02939 gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1129 YpsIP31758_1130 YpsIP31758_1130 rseA rseA 1331068 1331724 + sigma E factor negative regulatory protein identified by similarity to SP:P38106%3B match to protein family HMM PF03872%3B match to protein family HMM PF03873 gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1130 YpsIP31758_1131 YpsIP31758_1131 rseB rseB 1331724 1332680 + sigma-E factor regulatory protein RseB identified by similarity to SP:P46186%3B match to protein family HMM PF03888 gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1131 YpsIP31758_1132 YpsIP31758_1132 rseC rseC 1332677 1333132 + sigma-E factor regulatory protein RseC identified by similarity to SP:P46187%3B match to protein family HMM PF04246 gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1132 YpsIP31758_1133 YpsIP31758_1133 YpsIP31758_1133 1333153 1334007 - conserved hypothetical protein identified by similarity to GB:CAC92954.1 gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1133 YpsIP31758_1134 YpsIP31758_1134 lepA lepA 1334507 1336306 + GTP-binding protein LepA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393 gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1134 YpsIP31758_1135 YpsIP31758_1135 lepB lepB 1336316 1337314 + signal peptidase I identified by similarity to SP:P00803%3B match to protein family HMM PF00717%3B match to protein family HMM TIGR02227 gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1135 YpsIP31758_1136 YpsIP31758_1136 rnc rnc 1337666 1338346 + ribonuclease III identified by similarity to SP:P0A7Y0%3B match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191 gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1136 YpsIP31758_1137 YpsIP31758_1137 era era 1338343 1339254 + GTP-binding protein Era identified by similarity to SP:P06616%3B match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436%3B match to protein family HMM TIGR00650 gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1137 YpsIP31758_1138 YpsIP31758_1138 recO recO 1339264 1339989 + DNA repair protein RecO identified by similarity to SP:P0A7H3%3B match to protein family HMM PF02565%3B match to protein family HMM TIGR00613 gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1138 YpsIP31758_1139 YpsIP31758_1139 pdxJ pdxJ 1340148 1340879 + pyridoxal phosphate biosynthetic protein PdxJ identified by match to protein family HMM PF03740%3B match to protein family HMM TIGR00559 gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1139 YpsIP31758_1140 YpsIP31758_1140 acpS acpS 1340879 1341259 + holo-(acyl-carrier-protein) synthase identified by match to protein family HMM PF01648%3B match to protein family HMM TIGR00516%3B match to protein family HMM TIGR00556 gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1140 YpsIP31758_1141 YpsIP31758_1141 YpsIP31758_1141 1341365 1341625 - iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037 gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1141 YpsIP31758_1142 YpsIP31758_1142 YpsIP31758_1142 1341787 1342626 - transcriptional regulator%2C RpiR family identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418 gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1142 YpsIP31758_1143 YpsIP31758_1143 YpsIP31758_1143 1342834 1343721 + glucokinase regulator-like protein identified by match to protein family HMM PF01380%3B match to protein family HMM TIGR00274 gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1143 YpsIP31758_1144 YpsIP31758_1144 YpsIP31758_1144 1343996 1344643 + HAD hydrolase YfhB identified by match to protein family HMM TIGR01545 gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1144 YpsIP31758_1145 YpsIP31758_1145 tadA tadA 1344714 1345316 + tRNA-specific adenosine deaminase identified by similarity to SP:P68398%3B match to protein family HMM PF00383 gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1145 YpsIP31758_1146 YpsIP31758_1146 YpsIP31758_1146 1345443 1346903 - bacterial extracellular solute-binding protein/transglycosylase SLT domain identified by match to protein family HMM PF00497%3B match to protein family HMM PF01464 gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1146 YpsIP31758_1147 YpsIP31758_1147 purL purL 1347219 1351109 + phosphoribosylformylglycinamidine synthase identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR01735 gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1147 YpsIP31758_1148 YpsIP31758_1148 YpsIP31758_1148 1351554 1351928 - hypothetical protein identified by glimmer%3B putative gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1148 YpsIP31758_1149 YpsIP31758_1149 YpsIP31758_1149 1352251 1352811 - conserved hypothetical protein gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1149 YpsIP31758_1150 YpsIP31758_1150 YpsIP31758_1150 1354006 1355442 + Putative sensor-like histidine kinase YfhK identified by similarity to SP:P52101%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1150 YpsIP31758_1151 YpsIP31758_1151 YpsIP31758_1151 1355446 1356498 + conserved hypothetical protein gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1151 YpsIP31758_1152 YpsIP31758_1152 YpsIP31758_1152 1356461 1357798 + sigma-54 dependent DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF07728 gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1152 YpsIP31758_1153 YpsIP31758_1153 YpsIP31758_1153 1357818 1357961 + hypothetical protein identified by glimmer%3B putative gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1153 YpsIP31758_1154 YpsIP31758_1154 YpsIP31758_1154 1357958 1359580 + NAD+ synthetase family protein identified by match to protein family HMM PF00795%3B match to protein family HMM PF02540%3B match to protein family HMM TIGR00552 gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1154 YpsIP31758_1155 YpsIP31758_1155 glnB glnB 1359595 1359933 + nitrogen regulatory protein P-II 1 identified by similarity to SP:P0A9Z1%3B match to protein family HMM PF00543 gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1155 YpsIP31758_1156 YpsIP31758_1156 YpsIP31758_1156 1360130 1361029 - conserved hypothetical protein identified by similarity to GB:CAH22109.1 gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1156 YpsIP31758_1157 YpsIP31758_1157 hmp hmp 1361493 1362683 - flavohemoprotein identified by similarity to SP:P24232%3B match to protein family HMM PF00042%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1157 YpsIP31758_1158 YpsIP31758_1158 glyA glyA 1363224 1364477 + serine hydroxymethyltransferase identified by similarity to SP:P0A827%3B match to protein family HMM PF00464%3B match to protein family HMM PF01212%3B match to protein family HMM PF01276 gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1158 YpsIP31758_1159 YpsIP31758_1159 YpsIP31758_1159 1364590 1364811 + putative membrane protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1159 YpsIP31758_1160 YpsIP31758_1160 ail ail 1364929 1365468 + attachment invasion locus protein identified by similarity to SP:P16454%3B match to protein family HMM PF06316%3B match to protein family HMM TIGR03304 gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1160 YpsIP31758_1161 YpsIP31758_1161 csiE csiE 1366992 1368353 - stationary phase inducible protein CsiE identified by similarity to SP:P54901%3B match to protein family HMM PF00874 gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1161 YpsIP31758_1162 YpsIP31758_1162 YpsIP31758_1162 1365838 1366995 + MFS transporter%2C phenyl propionate permease (PPP) family identified by match to protein family HMM PF01306%3B match to protein family HMM PF07690 gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1162 YpsIP31758_1163 YpsIP31758_1163 YpsIP31758_1163 1368495 1369169 + conserved hypothetical protein identified by match to protein family HMM PF06226 gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1163 YpsIP31758_1164 YpsIP31758_1164 YpsIP31758_1164 1369160 1370182 + transporter%2C Ni2+-Co2+ transporter (NiCoT) family identified by match to protein family HMM PF03824 gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1164 YpsIP31758_1165 YpsIP31758_1165 suhB suhB 1370281 1371084 - inositol-1-monophosphatase identified by similarity to SP:P0ADG4%3B match to protein family HMM PF00459 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1165 YpsIP31758_1166 YpsIP31758_1166 YpsIP31758_1166 1371203 1371976 + RNA methyltransferase%2C TrmH family%2C group 1 identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00050 gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1166 YpsIP31758_1167 YpsIP31758_1167 iscR iscR 1372132 1372626 + iron-sulfur cluster assembly transcription factor IscR identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738%3B match to protein family HMM TIGR02010 gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1167 YpsIP31758_1168 YpsIP31758_1168 iscS iscS 1372680 1373909 + cysteine desulfurase IscS identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR02006 gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1168 YpsIP31758_1169 YpsIP31758_1169 iscU iscU 1373940 1374326 + FeS cluster assembly scaffold IscU identified by match to protein family HMM PF01592%3B match to protein family HMM TIGR01999 gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1169 YpsIP31758_1170 YpsIP31758_1170 iscA iscA 1374596 1374919 + iron-sulfur cluster assembly protein IscA identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049%3B match to protein family HMM TIGR02011 gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1170 YpsIP31758_1171 YpsIP31758_1171 hscB hscB 1375032 1375556 + Fe-S protein assembly co-chaperone HscB identified by similarity to SP:P0A6L9%3B match to protein family HMM PF00226%3B match to protein family HMM PF07743%3B match to protein family HMM TIGR00714 gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1171 YpsIP31758_1172 YpsIP31758_1172 hscA hscA 1375799 1377733 + Fe-S protein assembly chaperone HscA identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR01991 gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1172 YpsIP31758_1173 YpsIP31758_1173 fdx fdx 1377736 1378071 + ferredoxin%2C 2Fe-2S type%2C ISC system identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR02007 gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1173 YpsIP31758_1174 YpsIP31758_1174 YpsIP31758_1174 1378101 1378301 + conserved hypothetical protein identified by match to protein family HMM PF04384%3B match to protein family HMM TIGR03412 gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1174 YpsIP31758_1175 YpsIP31758_1175 pepB pepB 1378441 1379739 + peptidase B identified by similarity to SP:Q9RF52%3B match to protein family HMM PF00883 gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1175 YpsIP31758_1176 YpsIP31758_1176 sseB sseB 1379818 1380735 + sseB protein identified by similarity to SP:P31143%3B match to protein family HMM PF07179 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1176 YpsIP31758_1177 YpsIP31758_1177 YpsIP31758_1177 1381005 1384358 - putative autotransporter protein identified by match to protein family HMM PF03212%3B match to protein family HMM PF03797%3B match to protein family HMM TIGR01414%3B match to protein family HMM TIGR03304 gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1177 YpsIP31758_1178 YpsIP31758_1178 YpsIP31758_1178 1384482 1384619 - hypothetical protein identified by glimmer%3B putative gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1178 YpsIP31758_1179 YpsIP31758_1179 YpsIP31758_1179 1384916 1389541 - putative autotransporter protein identified by match to protein family HMM PF03212%3B match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1179 YpsIP31758_1180 YpsIP31758_1180 YpsIP31758_1180 1384779 1384919 + hypothetical protein identified by glimmer%3B putative gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1180 YpsIP31758_1181 YpsIP31758_1181 YpsIP31758_1181 1390257 1392677 + hypothetical protein identified by glimmer%3B putative gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1181 YpsIP31758_1182 YpsIP31758_1182 ndk ndk 1393004 1393432 + nucleoside diphosphate kinase identified by similarity to SP:P0A763%3B match to protein family HMM PF00334 gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1182 YpsIP31758_1183 YpsIP31758_1183 YpsIP31758_1183 1393694 1394890 + radical SAM domain protein%2C Cfr family identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00048 gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1183 YpsIP31758_1184 YpsIP31758_1184 pilF pilF 1395044 1395793 + type IV pilus biogenesis/stability protein PilW identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM TIGR02521 gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1184 YpsIP31758_1185 YpsIP31758_1185 YpsIP31758_1185 1395783 1396874 + conserved hypothetical protein identified by similarity to GB:AAZ89226.1%3B match to protein family HMM PF01381 gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1185 YpsIP31758_1186 YpsIP31758_1186 ispG ispG 1396978 1398105 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase identified by match to protein family HMM PF04551%3B match to protein family HMM TIGR00612 gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1186 YpsIP31758_1187 YpsIP31758_1187 hisS hisS 1398314 1399588 + histidyl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00442 gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1187 YpsIP31758_1188 YpsIP31758_1188 YpsIP31758_1188 1399602 1400237 + conserved hypothetical protein identified by similarity to GB:AAN81485.1 gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1188 YpsIP31758_1189 YpsIP31758_1189 YpsIP31758_1189 1400249 1401430 + putative lipoprotein YfgL%3B identified by match to protein family HMM PF01011%3B match to protein family HMM TIGR03300 gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1189 YpsIP31758_1190 YpsIP31758_1190 YpsIP31758_1190 1401578 1403065 + GTP-binding protein EngA identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650 gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1190 YpsIP31758_1191 YpsIP31758_1191 YpsIP31758_1191 1403434 1404390 + transporter%2C auxin efflux carrier family identified by match to protein family HMM PF03547 gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1191 YpsIP31758_1192 YpsIP31758_1192 YpsIP31758_1192 1404439 1404663 + conserved hypothetical protein identified by similarity to GB:CAH22073.1%3B match to protein family HMM PF07191 gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1192 YpsIP31758_1193 YpsIP31758_1193 xseA xseA 1404750 1406126 - exodeoxyribonuclease VII%2C large subunit identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237 gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1193 YpsIP31758_1194 YpsIP31758_1194 guaB guaB 1406296 1407759 + inosine-5'-monophosphate dehydrogenase identified by match to protein family HMM PF00478%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01302 gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1194 YpsIP31758_1195 YpsIP31758_1195 YpsIP31758_1195 1407831 1407956 - hypothetical protein identified by glimmer%3B putative gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1195 YpsIP31758_1196 YpsIP31758_1196 guaA guaA 1407939 1409516 + GMP synthase identified by similarity to PDB:1GPM_A%3B match to protein family HMM PF00117%3B match to protein family HMM PF00958%3B match to protein family HMM TIGR00884%3B match to protein family HMM TIGR00888 gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1196 YpsIP31758_1197 YpsIP31758_1197 YpsIP31758_1197 1409548 1409700 + hypothetical protein identified by glimmer%3B putative gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1197 YpsIP31758_1198 YpsIP31758_1198 YpsIP31758_1198 1409955 1410434 - conserved hypothetical protein identified by similarity to GB:CAG76570.1%3B match to protein family HMM PF05638%3B match to protein family HMM TIGR03344 gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1198 YpsIP31758_1199 YpsIP31758_1199 YpsIP31758_1199 1410458 1410856 - conserved hypothetical protein identified by similarity to GB:CAH22068.1%3B match to protein family HMM PF06836 gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1199 YpsIP31758_1200 YpsIP31758_1200 YpsIP31758_1200 1411764 1412645 - conserved hypothetical protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1200 YpsIP31758_1201 YpsIP31758_1201 YpsIP31758_1201 1412743 1413210 - putative enterobacterial membrane protein identified by match to protein family HMM PF06092 gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1201 YpsIP31758_1202 YpsIP31758_1202 YpsIP31758_1202 1413200 1414048 - conserved hypothetical protein identified by similarity to GB:AAS63325.1%3B match to protein family HMM TIGR03034 gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1202 YpsIP31758_1203 YpsIP31758_1203 thiD thiD 1414643 1415443 + phosphomethylpyrimidine kinase identified by match to protein family HMM TIGR00097 gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1203 YpsIP31758_1204 YpsIP31758_1204 YpsIP31758_1204 1415471 1416391 - conserved hypothetical protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1204 YpsIP31758_1205 YpsIP31758_1205 YpsIP31758_1205 1416576 1416761 - hypothetical protein identified by glimmer%3B putative gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1205 YpsIP31758_1206 YpsIP31758_1206 YpsIP31758_1206 1416622 1417131 + conserved hypothetical protein identified by similarity to SP:Q9HXB1 gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1206 YpsIP31758_1207 YpsIP31758_1207 YpsIP31758_1207 1417418 1418308 - putative diacylglycerol kinase identified by match to protein family HMM PF00781%3B match to protein family HMM TIGR00147 gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1207 YpsIP31758_1208 YpsIP31758_1208 YpsIP31758_1208 1418946 1420340 - peptidase%2C U32 family identified by match to protein family HMM PF01136 gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1208 YpsIP31758_1209 YpsIP31758_1209 YpsIP31758_1209 1420638 1420976 - conserved hypothetical protein identified by match to protein family HMM PF07411 gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1209 YpsIP31758_1210 YpsIP31758_1210 baeR baeR 1421113 1421832 - transcriptional regulatory protein BaeR identified by similarity to SP:P69228%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1210 YpsIP31758_1211 YpsIP31758_1211 baeS baeS 1421842 1423227 - signal transduction histidine-protein kinase BaeS identified by similarity to SP:P30847%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1211 YpsIP31758_1212 YpsIP31758_1212 mdtD mdtD 1423258 1424655 - transporter%2C major facilitator family part of mdtABCDbaeRS operon (EcoGene ref EG12136)%3B identified by match to protein family HMM PF07690 gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1212 YpsIP31758_1213 YpsIP31758_1213 mdtC mdtC 1424689 1427763 - multidrug resistance protein MdtC identified by similarity to SP:P76399%3B match to protein family HMM PF00873 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1213 YpsIP31758_1214 YpsIP31758_1214 mdtB mdtB 1427760 1430918 - multidrug resistance protein MdtB identified by similarity to SP:P76398%3B match to protein family HMM PF00873 gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1214 YpsIP31758_1215 YpsIP31758_1215 mdtA mdtA 1430918 1432252 - multidrug resistance protein MdtA identified by similarity to SP:P76397%3B match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1215 YpsIP31758_1216 YpsIP31758_1216 potA potA 1432668 1433753 - spermidine/putrescine ABC transporter%2C ATP-binding subunit identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01187 gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1216 YpsIP31758_1217 YpsIP31758_1217 YpsIP31758_1217 1434136 1435641 - transcriptional regulator%2C GntR family identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392 gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1217 YpsIP31758_1218 YpsIP31758_1218 gabT gabT 1435823 1437112 + 4-aminobutyrate transaminase identified by similarity to SP:P50457%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00700 gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1218 YpsIP31758_1219 YpsIP31758_1219 potD potD 1437165 1438193 + spermidine/putrescine ABC transporter%2C periplasmic spermidine/putrescine-binding protein gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1219 YpsIP31758_1220 YpsIP31758_1220 potC potC 1438240 1439505 + spermidine/putrescine ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1220 YpsIP31758_1221 YpsIP31758_1221 potB potB 1439567 1440415 + spermidine/putrescine ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1221 YpsIP31758_1222 YpsIP31758_1222 YpsIP31758_1222 1440487 1440627 + hypothetical protein identified by glimmer%3B putative gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1222 YpsIP31758_1223 YpsIP31758_1223 YpsIP31758_1223 1440686 1442038 - putative chaperone protein yegD gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1223 YpsIP31758_1224 YpsIP31758_1224 mgtE mgtE 1442180 1443655 - magnesium transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400 gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1224 YpsIP31758_1225 YpsIP31758_1225 YpsIP31758_1225 1443707 1443919 - conserved hypothetical protein gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1225 YpsIP31758_1226 YpsIP31758_1226 ppx ppx 1444084 1445643 - exopolyphosphatase identified by similarity to SP:P29014%3B match to protein family HMM PF02541 gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1226 YpsIP31758_1227 YpsIP31758_1227 ppk ppk 1445654 1447717 - polyphosphate kinase identified by match to protein family HMM PF02503 gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1227 YpsIP31758_1228 YpsIP31758_1228 pstC1 pstC1 1448001 1450232 + phosphate ABC transporter%2C permease protein PstC identified by match to protein family HMM PF00528 gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1228 YpsIP31758_1229 YpsIP31758_1229 pstA2 pstA2 1450232 1451944 + phosphate ABC transporter%2C permease protein PstA identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974 gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1229 YpsIP31758_1230 YpsIP31758_1230 pstB2 pstB2 1451972 1452784 + phosphate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972 gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1230 YpsIP31758_1231 YpsIP31758_1231 YpsIP31758_1231 1453028 1454221 + fliB family protein identified by similarity to SP:P37587%3B match to protein family HMM PF03692 gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1231 YpsIP31758_1232 YpsIP31758_1232 speG speG 1454315 1454860 - spermidine N(1)-acetyltransferase identified by similarity to SP:P0A951%3B match to protein family HMM PF00583 gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1232 YpsIP31758_1233 YpsIP31758_1233 purN purN 1455089 1455727 - phosphoribosylglycinamide formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00639 gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1233 YpsIP31758_1234 YpsIP31758_1234 purM purM 1455842 1456885 - phosphoribosylformylglycinamidine cyclo-ligase identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878 gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1234 YpsIP31758_1235 YpsIP31758_1235 upp upp 1457320 1457946 + uracil phosphoribosyltransferase identified by similarity to SP:P0A8F0%3B match to protein family HMM PF00156%3B match to protein family HMM TIGR01091 gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1235 YpsIP31758_1236 YpsIP31758_1236 uraA uraA 1458058 1459344 + uracil permease identified by similarity to SP:P0AGM7%3B match to protein family HMM PF00860%3B match to protein family HMM TIGR00801 gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1236 YpsIP31758_1237 YpsIP31758_1237 hda hda 1459591 1460310 + DnaA-like protein identified by similarity to SP:P69931%3B match to protein family HMM PF00308 gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1237 YpsIP31758_1238 YpsIP31758_1238 arsC arsC 1460523 1460879 - arsenate reductase (glutaredoxin) identified by match to protein family HMM PF03960%3B match to protein family HMM TIGR00014 gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1238 YpsIP31758_1239 YpsIP31758_1239 YpsIP31758_1239 1460986 1462470 - peptidase%2C M48 family identified by match to protein family HMM PF01435 gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1239 YpsIP31758_1240 YpsIP31758_1240 YpsIP31758_1240 1462801 1463865 + putative permease PerM identified by match to protein family HMM PF01594 gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1240 YpsIP31758_1241 YpsIP31758_1241 YpsIP31758_1241 1463955 1464128 - hypothetical protein identified by glimmer%3B putative gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1241 YpsIP31758_1242 YpsIP31758_1242 YpsIP31758_1242 1464142 1464288 + hypothetical protein identified by glimmer%3B putative gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1242 YpsIP31758_1243 YpsIP31758_1243 YpsIP31758_1243 1464466 1464681 + conserved hypothetical protein gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1243 YpsIP31758_1244 YpsIP31758_1244 YpsIP31758_1244 1464672 1465166 + conserved hypothetical protein%2C fragment%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1244 YpsIP31758_1245 YpsIP31758_1245 bcp bcp 1465833 1466303 - peroxiredoxin%2C bacterioferritin comigratory protein identified by similarity to SP:P0AE55%3B match to protein family HMM PF00578%3B match to protein family HMM PF02630 gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1245 YpsIP31758_1246 YpsIP31758_1246 gcvR gcvR 1466306 1466875 - glycine cleavage system transcriptional repressor identified by similarity to SP:P0A9I3%3B match to protein family HMM PF01842 gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1246 YpsIP31758_1247 YpsIP31758_1247 dapA dapA 1467040 1467921 + dihydrodipicolinate synthase identified by match to protein family HMM PF00701%3B match to protein family HMM TIGR00674 gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1247 YpsIP31758_1248 YpsIP31758_1248 YpsIP31758_1248 1467939 1468997 + NlpB/DapX family lipoprotein identified by match to protein family HMM PF06804 gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1248 YpsIP31758_1249 YpsIP31758_1249 purC purC 1469068 1469781 + phosphoribosylaminoimidazole-succinocarboxamide synthase identified by match to protein family HMM PF01259%3B match to protein family HMM TIGR00081 gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1249 YpsIP31758_1250 YpsIP31758_1250 YpsIP31758_1250 1470001 1470870 + metalloprotease-like protein identified by match to protein family HMM PF04228 gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1250 YpsIP31758_1251 YpsIP31758_1251 YpsIP31758_1251 1470964 1471416 + conserved hypothetical protein identified by similarity to GB:CAH22017.1%3B match to protein family HMM PF04284 gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1251 YpsIP31758_1252 YpsIP31758_1252 YpsIP31758_1252 1471418 1473469 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583%3B match to protein family HMM PF05127 gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1252 YpsIP31758_1253 YpsIP31758_1253 YpsIP31758_1253 1473723 1473917 - conserved hypothetical protein identified by similarity to GB:CAH22015.1 gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1253 YpsIP31758_1254 YpsIP31758_1254 YpsIP31758_1254 1473985 1474662 - D-alanyl-D-alanine carboxypeptidase family protein identified by match to protein family HMM PF02557 gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1254 YpsIP31758_1255 YpsIP31758_1255 dapE dapE 1474659 1475786 - succinyl-diaminopimelate desuccinylase identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01246 gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1255 YpsIP31758_1256 YpsIP31758_1256 YpsIP31758_1256 1475788 1476186 - conserved hypothetical protein identified by match to protein family HMM PF03960%3B match to protein family HMM TIGR01617 gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1256 YpsIP31758_1257 YpsIP31758_1257 YpsIP31758_1257 1476346 1476819 - tetratricopeptide repeat protein gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1257 YpsIP31758_1258 YpsIP31758_1258 YpsIP31758_1258 1477154 1478218 + ABC transporter%2C periplasmic substrate-binding protein identified by match to protein family HMM PF01547 gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1258 YpsIP31758_1259 YpsIP31758_1259 YpsIP31758_1259 1478313 1480082 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1259 YpsIP31758_1260 YpsIP31758_1260 YpsIP31758_1260 1480075 1481145 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1260 YpsIP31758_1261 YpsIP31758_1261 YpsIP31758_1261 1481159 1481365 + putative membrane protein gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1261 YpsIP31758_1262 YpsIP31758_1262 YpsIP31758_1262 1481577 1481693 - hypothetical protein identified by glimmer%3B putative gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1262 YpsIP31758_1263 YpsIP31758_1263 YpsIP31758_1263 1481692 1483296 + sulfatase identified by match to protein family HMM PF00884 gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1263 YpsIP31758_1264 YpsIP31758_1264 YpsIP31758_1264 1483354 1484529 + putative sulfatase regulator identified by similarity to SP:P25550%3B match to protein family HMM PF04055 gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1264 YpsIP31758_1265 YpsIP31758_1265 YpsIP31758_1265 1484770 1484910 + hypothetical protein identified by glimmer%3B putative gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1265 YpsIP31758_1266 YpsIP31758_1266 YpsIP31758_1266 1485276 1485824 - putative metal-dependent hydrolase%2C membrane-bound identified by match to protein family HMM PF04307 gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1266 YpsIP31758_1267 YpsIP31758_1267 YpsIP31758_1267 1486113 1486697 - hypothetical protein identified by glimmer%3B putative gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1267 YpsIP31758_1268 YpsIP31758_1268 acrD acrD 1486928 1490059 - acriflavine resistance protein D aminoglycoside efflux pump%3B identified by similarity to SP:P24177%3B match to protein family HMM PF00873%3B match to protein family HMM TIGR00915 gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1268 YpsIP31758_1269 YpsIP31758_1269 YpsIP31758_1269 1490474 1490752 + conserved hypothetical protein gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1269 YpsIP31758_1270 YpsIP31758_1270 narP narP 1490765 1491394 - nitrate/nitrite response regulator protein NarP identified by similarity to SP:P31802%3B match to protein family HMM PF00072%3B match to protein family HMM PF00196%3B match to protein family HMM PF04967 gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1270 YpsIP31758_1271 YpsIP31758_1271 napF napF 1492233 1492736 + ferredoxin-type protein NapF identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00402 gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1271 YpsIP31758_1272 YpsIP31758_1272 napD napD 1492726 1492992 + NapD protein identified by similarity to SP:P0A9I7%3B match to protein family HMM PF03927 gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1272 YpsIP31758_1273 YpsIP31758_1273 napA napA 1492989 1495481 + periplasmic nitrate reductase%2C large subunit identified by similarity to SP:P33937%3B match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01409%3B match to protein family HMM TIGR01706 gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1273 YpsIP31758_1274 YpsIP31758_1274 napB napB 1495576 1496031 + periplasmic nitrate reductase%2C diheme cytochrome c subunit NapB identified by match to protein family HMM PF03892 gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1274 YpsIP31758_1275 YpsIP31758_1275 napC napC 1496059 1496658 + periplasmic nitrate reductase%2C cytochrome c-type protein NapC identified by match to protein family HMM PF03264%3B match to protein family HMM TIGR02161 gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1275 YpsIP31758_1276 YpsIP31758_1276 YpsIP31758_1276 1496843 1497439 + hydrolase%2C NUDIX family identified by match to protein family HMM PF00293%3B match to protein family HMM TIGR00052 gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1276 YpsIP31758_1277 YpsIP31758_1277 maeB maeB 1497898 1500177 + NADP-dependent malic enzyme identified by similarity to SP:P76558%3B match to protein family HMM PF00390%3B match to protein family HMM PF01515%3B match to protein family HMM PF03949 gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1277 YpsIP31758_1278 YpsIP31758_1278 YpsIP31758_1278 1500409 1500549 + conserved hypothetical protein gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1278 YpsIP31758_1279 YpsIP31758_1279 YpsIP31758_1279 1500599 1501057 - YaiI/YqxD family protein identified by match to protein family HMM PF02639 gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1279 YpsIP31758_1280 YpsIP31758_1280 hemF hemF 1501057 1501986 - coproporphyrinogen III oxidase%2C aerobic identified by similarity to SP:P36553%3B match to protein family HMM PF01218 gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1280 YpsIP31758_1281 YpsIP31758_1281 YpsIP31758_1281 1502268 1502693 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1281 YpsIP31758_1282 YpsIP31758_1282 YpsIP31758_1282 1502998 1503539 - IS630 family transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1282 YpsIP31758_1283 YpsIP31758_1283 YpsIP31758_1283 1503663 1504334 + conserved hypothetical protein identified by similarity to GB:CAH21989.1 gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1283 YpsIP31758_1284 YpsIP31758_1284 YpsIP31758_1284 1504331 1505038 + conserved hypothetical protein identified by similarity to GB:CAH21988.1 gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1284 YpsIP31758_1285 YpsIP31758_1285 YpsIP31758_1285 1505041 1505766 + conserved hypothetical protein identified by similarity to GB:CAH21987.1 gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1285 YpsIP31758_1286 YpsIP31758_1286 YpsIP31758_1286 1505926 1506093 + putative acetyltransferase YpeA%2C truncation gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1286 YpsIP31758_1287 YpsIP31758_1287 YpsIP31758_1287 1506564 1506980 + conserved hypothetical protein identified by similarity to GB:CAH21985.1 gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1287 YpsIP31758_1288 YpsIP31758_1288 YpsIP31758_1288 1507072 1509351 - putative autotransporter protein identified by match to protein family HMM PF03212%3B match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1288 YpsIP31758_1289 YpsIP31758_1289 YpsIP31758_1289 1509856 1510269 - OB-fold nucleic acid binding domain protein identified by similarity to SP:P0ADU5%3B match to protein family HMM PF01336%3B match to protein family HMM PF04076%3B match to protein family HMM TIGR00156 gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1289 YpsIP31758_1290 YpsIP31758_1290 YpsIP31758_1290 1510632 1511243 + putative lipoprotein identified by match to protein family HMM PF06572 gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1290 YpsIP31758_1291 YpsIP31758_1291 YpsIP31758_1291 1511258 1511398 + hypothetical protein identified by glimmer%3B putative gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1291 YpsIP31758_1292 YpsIP31758_1292 YpsIP31758_1292 1511421 1512320 + Dyp-type peroxidase family protein identified by match to protein family HMM PF04261%3B match to protein family HMM TIGR01413 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1292 YpsIP31758_1293 YpsIP31758_1293 YpsIP31758_1293 1512418 1513311 - putative N-acetylneuraminate lyase identified by similarity to GB:AAD28763.1%3B match to protein family HMM PF00701 gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1293 YpsIP31758_1294 YpsIP31758_1294 YpsIP31758_1294 1513374 1514075 - putative N-acetylmannosamine-6-phosphate epimerase identified by match to protein family HMM PF04131 gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1294 YpsIP31758_1295 YpsIP31758_1295 YpsIP31758_1295 1514579 1515451 + putative N-acetylmannosamine kinase identified by similarity to SP:P45425%3B match to protein family HMM PF00480 gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1295 YpsIP31758_1296 YpsIP31758_1296 YpsIP31758_1296 1515533 1516003 + conserved hypothetical protein identified by similarity to SP:P45424%3B match to protein family HMM PF04074%3B match to protein family HMM TIGR00022 gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1296 YpsIP31758_1297 YpsIP31758_1297 YpsIP31758_1297 1516192 1517070 + transcriptional regulator%2C RpiR family identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418 gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1297 YpsIP31758_1298 YpsIP31758_1298 YpsIP31758_1298 1517681 1519213 + transporter%2C major facilitator family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1298 YpsIP31758_1299 YpsIP31758_1299 cysP cysP 1519546 1520583 + sulfate/thiosulfate ABC transporter%2C periplasmic sulfate/thiosulfate-binding protein identified by similarity to SP:P16700%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR00971 gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1299 YpsIP31758_1300 YpsIP31758_1300 cysU cysU 1520583 1521416 + sulfate/thiosulfate ABC transporter%2C permease protein CysT identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02139 gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1300 YpsIP31758_1301 YpsIP31758_1301 cysW cysW 1521416 1522291 + sulfate/thiosulfate ABC transporter%2C permease protein CysW identified by similarity to SP:P0AEB0%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02140 gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1301 YpsIP31758_1302 YpsIP31758_1302 cysA cysA 1522281 1523372 + sulfate/thiosulfate ABC transporter%2C ATP-binding protein CysA identified by similarity to SP:P16676%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR00968 gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1302 YpsIP31758_1303 YpsIP31758_1303 cysM cysM 1523543 1524421 + cysteine synthase B identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01138 gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1303 YpsIP31758_1304 YpsIP31758_1304 YpsIP31758_1304 1524614 1525321 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1304 YpsIP31758_1305 YpsIP31758_1305 YpsIP31758_1305 1525318 1526862 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1305 YpsIP31758_1306 YpsIP31758_1306 YpsIP31758_1306 1527095 1528477 - von Willebrand factor type A domain protein identified by match to protein family HMM PF00092 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1306 YpsIP31758_1307 YpsIP31758_1307 YpsIP31758_1307 1529214 1530395 + aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1307 YpsIP31758_1308 YpsIP31758_1308 YpsIP31758_1308 1530429 1531649 + peptidase%2C M24 family identified by match to protein family HMM PF00557 gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1308 YpsIP31758_1309 YpsIP31758_1309 YpsIP31758_1309 1531986 1533446 + transporter%2C solute:sodium symporter (SSS) family identified by match to protein family HMM PF00474 gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1309 YpsIP31758_1310 YpsIP31758_1310 YpsIP31758_1310 1533506 1535152 + pyridine nucleotide-disulphide oxidoreductase family protein identified by match to protein family HMM PF00070%3B match to protein family HMM PF00581%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1310 YpsIP31758_1311 YpsIP31758_1311 YpsIP31758_1311 1535407 1537443 - efflux ABC transporter%2C ATP-binding/permease protein identified by similarity to SP:P75831%3B match to protein family HMM PF00005%3B match to protein family HMM PF02687 gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1311 YpsIP31758_1312 YpsIP31758_1312 YpsIP31758_1312 1537447 1538652 - efflux ABC transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1312 YpsIP31758_1313 YpsIP31758_1313 cpxR1 cpxR1 1538840 1539523 + transcriptional regulatory protein CpxR identified by similarity to SP:P0AE88%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1313 YpsIP31758_1314 YpsIP31758_1314 YpsIP31758_1314 1539549 1540898 + sensor histidine kinase CpxA identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1314 YpsIP31758_1315 YpsIP31758_1315 YpsIP31758_1315 1541081 1541590 - PTS system%2C glucose-specific EIIA component identified by similarity to SP:P69783%3B match to protein family HMM PF00358%3B match to protein family HMM TIGR00830 gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1315 YpsIP31758_1316 YpsIP31758_1316 ptsI ptsI 1541639 1543366 - phosphoenolpyruvate-protein phosphotransferase PtsI identified by similarity to SP:P08839%3B match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417 gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1316 YpsIP31758_1317 YpsIP31758_1317 YpsIP31758_1317 1543415 1543672 - phosphocarrier%2C HPr family identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1317 YpsIP31758_1318 YpsIP31758_1318 cysK cysK 1544171 1545139 - cysteine synthase A identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01139 gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1318 YpsIP31758_1319 YpsIP31758_1319 YpsIP31758_1319 1545296 1546030 - putative protein CysZ identified by similarity to SP:P0A6J3%3B match to protein family HMM PF04401 gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1319 YpsIP31758_1320 YpsIP31758_1320 zipA zipA 1546282 1547265 + cell division protein ZipA identified by similarity to SP:P77173%3B match to protein family HMM PF04354%3B match to protein family HMM TIGR02205 gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1320 YpsIP31758_1321 YpsIP31758_1321 ligA1 ligA1 1547356 1549368 + DNA ligase%2C NAD-dependent identified by similarity to SP:P15042%3B match to protein family HMM PF00533%3B match to protein family HMM PF00633%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575 gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1321 YpsIP31758_1322 YpsIP31758_1322 YpsIP31758_1322 1549388 1549603 + conserved hypothetical protein identified by similarity to SP:P0AD40 gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1322 YpsIP31758_1323 YpsIP31758_1323 YpsIP31758_1323 1549704 1550051 - conserved hypothetical protein gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1323 YpsIP31758_1324 YpsIP31758_1324 YpsIP31758_1324 1550200 1550805 - conserved hypothetical protein identified by similarity to GB:AAS62803.1%3B match to protein family HMM PF06042 gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1324 YpsIP31758_1325 YpsIP31758_1325 gltX gltX 1551458 1552873 - glutamyl-tRNA synthetase identified by similarity to SP:P04805%3B match to protein family HMM PF00749%3B match to protein family HMM TIGR00464 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1325 YpsIP31758_1326 YpsIP31758_1326 nupC nupC 1554532 1555716 - nucleoside transporter NupC identified by similarity to SP:P0AFF2%3B match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804 gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1326 YpsIP31758_1327 YpsIP31758_1327 mtnH mtnH 1556167 1557396 + manganese transport protein MntH identified by similarity to SP:P0A769%3B match to protein family HMM PF01566%3B match to protein family HMM TIGR01197 gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1327 YpsIP31758_1328 YpsIP31758_1328 YpsIP31758_1328 1557489 1557902 - conserved hypothetical protein gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1328 YpsIP31758_1329 YpsIP31758_1329 YpsIP31758_1329 1558073 1559062 - oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1329 YpsIP31758_1330 YpsIP31758_1330 YpsIP31758_1330 1559217 1560095 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1330 YpsIP31758_1331 YpsIP31758_1331 YpsIP31758_1331 1560197 1560673 + putative transmembrane protein identified by match to protein family HMM PF05232 gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1331 YpsIP31758_1332 YpsIP31758_1332 glk glk 1560854 1561825 + glucokinase identified by match to protein family HMM PF02685%3B match to protein family HMM TIGR00749 gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1332 YpsIP31758_1333 YpsIP31758_1333 YpsIP31758_1333 1561903 1563150 - conserved hypothetical protein identified by similarity to SP:P75791%3B match to protein family HMM PF07350 gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1333 YpsIP31758_1334 YpsIP31758_1334 YpsIP31758_1334 1563416 1564651 + aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1334 YpsIP31758_1335 YpsIP31758_1335 YpsIP31758_1335 1564877 1565401 + cytochrome b561 family protein identified by match to protein family HMM PF01292 gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1335 YpsIP31758_1336 YpsIP31758_1336 YpsIP31758_1336 1565496 1565927 - conserved hypothetical protein identified by similarity to GB:CAC92217.1 gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1336 YpsIP31758_1337 YpsIP31758_1337 YpsIP31758_1337 1566517 1567188 + curli production assembly/transport component CsgG identified by match to protein family HMM PF03783 gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1337 YpsIP31758_1338 YpsIP31758_1338 YpsIP31758_1338 1567170 1567571 + putative lipoprotein gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1338 YpsIP31758_1339 YpsIP31758_1339 YpsIP31758_1339 1567568 1568224 + putative lipoprotein identified by match to protein family HMM PF05643 gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1339 YpsIP31758_1340 YpsIP31758_1340 YpsIP31758_1340 1568469 1569038 - putative ferredoxin-type protein NapF identified by match to protein family HMM PF00037 gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1340 YpsIP31758_1341 YpsIP31758_1341 YpsIP31758_1341 1569035 1569700 - cytoplasmic chaperone%2C TorD family identified by match to protein family HMM PF06192 gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1341 YpsIP31758_1342 YpsIP31758_1342 YpsIP31758_1342 1570237 1571013 - putative anaerobic dimethyl sulfoxide reductase%2C C subunit identified by similarity to SP:P18777 gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1342 YpsIP31758_1343 YpsIP31758_1343 YpsIP31758_1343 1571015 1571632 - putative anaerobic dimethyl sulfoxide reductase%2C B subunit identified by similarity to SP:P18776%3B match to protein family HMM PF00037%3B match to protein family HMM TIGR02951 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1343 YpsIP31758_1344 YpsIP31758_1344 YpsIP31758_1344 1571644 1574070 - putative anaerobic dimethyl sulfoxide reductase%2C A subunit identified by similarity to SP:P18775%3B match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01409%3B match to protein family HMM TIGR02166 gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1344 YpsIP31758_1345 YpsIP31758_1345 YpsIP31758_1345 1574901 1575749 + conserved hypothetical protein identified by similarity to GB:CAC92208.1 gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1345 YpsIP31758_1346 YpsIP31758_1346 YpsIP31758_1346 1576060 1576539 - conserved hypothetical protein identified by similarity to GB:CAE12699.1%3B match to protein family HMM PF05638%3B match to protein family HMM TIGR03344 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1346 YpsIP31758_1347 YpsIP31758_1347 YpsIP31758_1347 1577005 1577529 + conserved hypothetical protein identified by similarity to GB:CAH21923.1 gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1347 YpsIP31758_1348 YpsIP31758_1348 fbpC fbpC 1577589 1578638 - iron(III) ABC transporter%2C ATP-binding protein sfuC%3B identified by similarity to SP:P21410%3B match to protein family HMM PF00005 gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1348 YpsIP31758_1349 YpsIP31758_1349 fbpB fbpB 1578635 1580221 - iron(III) ABC transporter%2C permease protein sfuB%3B identified by similarity to SP:P21409%3B match to protein family HMM PF00528 gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1349 YpsIP31758_1350 YpsIP31758_1350 fbpA fbpA 1580277 1581296 - iron(III) ABC transporter%2C permease protein%2C periplasmic iron(III)-binding protein sfuA%3B identified by similarity to SP:P21408%3B match to protein family HMM PF01547 gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1350 YpsIP31758_1351 YpsIP31758_1351 mltB mltB 1581625 1582719 + lytic murein transglycosylase B identified by match to protein family HMM TIGR02282 gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1351 YpsIP31758_1352 YpsIP31758_1352 YpsIP31758_1352 1582941 1583054 + hypothetical protein identified by glimmer%3B putative gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1352 YpsIP31758_1353 YpsIP31758_1353 YpsIP31758_1353 1583960 1584562 + transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00196 gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1353 YpsIP31758_1354 YpsIP31758_1354 YpsIP31758_1354 1584935 1585417 - conserved hypothetical protein gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1354 YpsIP31758_1355 YpsIP31758_1355 YpsIP31758_1355 1585414 1587096 - OmpA domain protein identified by match to protein family HMM PF00691 gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1355 YpsIP31758_1356 YpsIP31758_1356 YpsIP31758_1356 1587097 1587798 - conserved hypothetical protein identified by similarity to GB:AAS62772.1 gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1356 YpsIP31758_1357 YpsIP31758_1357 YpsIP31758_1357 1587795 1589132 - conserved hypothetical protein identified by similarity to GB:CAJ27305.1 gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1357 YpsIP31758_1358 YpsIP31758_1358 YpsIP31758_1358 1589172 1590203 - conserved hypothetical protein gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1358 YpsIP31758_1359 YpsIP31758_1359 YpsIP31758_1359 1590210 1591403 - ImpA domain protein identified by match to protein family HMM PF06812 gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1359 YpsIP31758_1360 YpsIP31758_1360 YpsIP31758_1360 1591502 1592527 - conserved hypothetical protein identified by similarity to GB:CAJ27308.1%3B match to protein family HMM PF06996%3B match to protein family HMM TIGR03347 gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1360 YpsIP31758_1361 YpsIP31758_1361 YpsIP31758_1361 1592527 1594407 - conserved hypothetical protein identified by similarity to GB:CAJ27309.1%3B match to protein family HMM PF05947%3B match to protein family HMM TIGR03359 gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1361 YpsIP31758_1362 YpsIP31758_1362 YpsIP31758_1362 1595191 1597848 + Clp protease-associated protein ClpB identified by similarity to GB:AAG00524.1%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR03345 gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1362 YpsIP31758_1363 YpsIP31758_1363 YpsIP31758_1363 1598059 1598604 + frimbrial protein identified by match to protein family HMM PF00419 gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1363 YpsIP31758_1364 YpsIP31758_1364 YpsIP31758_1364 1598761 1599522 + gram-negative pili assembly chaperone identified by match to protein family HMM PF00345%3B match to protein family HMM PF02753 gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1364 YpsIP31758_1365 YpsIP31758_1365 YpsIP31758_1365 1599821 1602322 + fimbrial usher protein identified by match to protein family HMM PF00577 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1365 YpsIP31758_1366 YpsIP31758_1366 YpsIP31758_1366 1602307 1602915 + fimbrial protein identified by match to protein family HMM PF00419 gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1366 YpsIP31758_1367 YpsIP31758_1367 YpsIP31758_1367 1603021 1603545 + conserved hypothetical protein identified by similarity to GB:CAJ27315.1%3B match to protein family HMM PF05591%3B match to protein family HMM TIGR03358 gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1367 YpsIP31758_1368 YpsIP31758_1368 YpsIP31758_1368 1603569 1605071 + conserved hypothetical protein identified by similarity to GB:CAJ27316.1%3B match to protein family HMM PF05943%3B match to protein family HMM TIGR03355 gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1368 YpsIP31758_1369 YpsIP31758_1369 YpsIP31758_1369 1605404 1605889 + conserved hypothetical protein identified by similarity to GB:CAJ27317.1%3B match to protein family HMM PF05638%3B match to protein family HMM TIGR03344 gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1369 YpsIP31758_1370 YpsIP31758_1370 YpsIP31758_1370 1606163 1606702 + putative lipoprotein identified by match to protein family HMM TIGR03352 gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1370 YpsIP31758_1371 YpsIP31758_1371 YpsIP31758_1371 1606706 1608055 + conserved hypothetical protein identified by similarity to GB:CAJ27319.1%3B match to protein family HMM PF05936%3B match to protein family HMM TIGR03353 gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1371 YpsIP31758_1372 YpsIP31758_1372 YpsIP31758_1372 1608052 1609428 + OmpA domain protein identified by match to protein family HMM PF00691%3B match to protein family HMM TIGR03349%3B match to protein family HMM TIGR03350 gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1372 YpsIP31758_1373 YpsIP31758_1373 YpsIP31758_1373 1609437 1613264 + putative membrane protein identified by match to protein family HMM PF06744%3B match to protein family HMM PF06761%3B match to protein family HMM TIGR03348 gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1373 YpsIP31758_1374 YpsIP31758_1374 YpsIP31758_1374 1613591 1616341 + Rhs element Vgr protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1374 YpsIP31758_1375 YpsIP31758_1375 YpsIP31758_1375 1616440 1616700 + conserved hypothetical protein identified by similarity to GB:ABA53151.1 gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1375 YpsIP31758_1376 YpsIP31758_1376 YpsIP31758_1376 1616706 1617548 + hypothetical protein identified by glimmer%3B putative gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1376 YpsIP31758_1377 YpsIP31758_1377 YpsIP31758_1377 1617568 1618374 + ImpE family protein identified by match to protein family HMM PF07024 gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1377 YpsIP31758_1378 YpsIP31758_1378 YpsIP31758_1378 1618438 1618917 + conserved hypothetical protein identified by similarity to GB:CAJ27326.1%3B match to protein family HMM PF07025%3B match to protein family HMM TIGR03357 gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1378 YpsIP31758_1379 YpsIP31758_1379 YpsIP31758_1379 1618942 1619289 + conserved hypothetical protein identified by similarity to GB:CAH21892.1 gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1379 YpsIP31758_1380 YpsIP31758_1380 phnA phnA 1619364 1619705 - alkylphosphonate utilization operon protein PhnA identified by match to protein family HMM PF03831%3B match to protein family HMM TIGR00686 gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1380 YpsIP31758_1381 YpsIP31758_1381 YpsIP31758_1381 1620081 1622066 - putative membrane protein gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1381 YpsIP31758_1382 YpsIP31758_1382 YpsIP31758_1382 1622125 1622667 - LemA family protein identified by match to protein family HMM PF04011 gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1382 YpsIP31758_1383 YpsIP31758_1383 YpsIP31758_1383 1623343 1623522 - hypothetical protein identified by glimmer%3B putative gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1383 YpsIP31758_1384 YpsIP31758_1384 YpsIP31758_1384 1623610 1624554 - hypothetical protein identified by glimmer%3B putative gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1384 YpsIP31758_1385 YpsIP31758_1385 YpsIP31758_1385 1624575 1625438 - hypothetical protein identified by glimmer%3B putative gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1385 YpsIP31758_1386 YpsIP31758_1386 YpsIP31758_1386 1626290 1626757 + hypothetical protein identified by glimmer%3B putative gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1386 YpsIP31758_1387 YpsIP31758_1387 ccmA ccmA 1627202 1627858 + heme ABC exporter%2C ATP-binding protein CcmA identified by similarity to SP:P33931%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01189 gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1387 YpsIP31758_1388 YpsIP31758_1388 ccmB ccmB 1627828 1628487 + heme exporter protein CcmB identified by match to protein family HMM PF03379%3B match to protein family HMM TIGR01190 gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1388 YpsIP31758_1389 YpsIP31758_1389 ccmC ccmC 1628550 1629287 + heme exporter protein CcmC identified by match to protein family HMM PF01578%3B match to protein family HMM TIGR01191 gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1389 YpsIP31758_1390 YpsIP31758_1390 ccmD ccmD 1629284 1629646 + heme exporter protein D identified by match to protein family HMM PF04995%3B match to protein family HMM TIGR03141 gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1390 YpsIP31758_1391 YpsIP31758_1391 ccmE ccmE 1629643 1630137 + cytochrome c-type biogenesis protein CcmE identified by similarity to SP:P69493%3B match to protein family HMM PF03100 gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1391 YpsIP31758_1392 YpsIP31758_1392 ccmF ccmF 1630134 1632104 + cytochrome c-type biogenesis protein CcmF identified by similarity to SP:P33927%3B match to protein family HMM PF01578%3B match to protein family HMM TIGR00353 gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1392 YpsIP31758_1393 YpsIP31758_1393 dsbE dsbE 1632101 1632667 + thiol:disulfide interchange protein DsbE identified by similarity to SP:P0AA86%3B match to protein family HMM TIGR00385 gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1393 YpsIP31758_1394 YpsIP31758_1394 YpsIP31758_1394 1632664 1633176 + putative cytochrome c-type biogenesis protein identified by match to protein family HMM PF03918 gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1394 YpsIP31758_1395 YpsIP31758_1395 ccmI ccmI 1633176 1634402 + cytochrome c-type biogenesis protein CcmI identified by match to protein family HMM PF07719%3B match to protein family HMM TIGR03142 gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1395 YpsIP31758_1396 YpsIP31758_1396 vacJ vacJ 1634438 1635202 + lipoprotein VacJ identified by similarity to SP:P43262%3B match to protein family HMM PF04333 gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1396 YpsIP31758_1397 YpsIP31758_1397 fadL fadL 1635309 1636574 - long-chain fatty acid transport protein identified by similarity to SP:P10384%3B match to protein family HMM PF03349 gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1397 YpsIP31758_1398 YpsIP31758_1398 YpsIP31758_1398 1636988 1637284 + conserved hypothetical protein TIGR00743 identified by similarity to SP:P0AD33%3B match to protein family HMM PF04175%3B match to protein family HMM TIGR00743 gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1398 YpsIP31758_1399 YpsIP31758_1399 fadI fadI 1637571 1638881 + acetyl-CoA C-acyltransferase FadI identified by match to protein family HMM PF00108%3B match to protein family HMM PF02803%3B match to protein family HMM TIGR01930%3B match to protein family HMM TIGR02446 gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1399 YpsIP31758_1400 YpsIP31758_1400 fadJ fadJ 1638962 1641205 + fatty oxidation complex%2C alpha subunit FadJ identified by match to protein family HMM PF00378%3B match to protein family HMM PF00725%3B match to protein family HMM PF02737%3B match to protein family HMM TIGR02440 gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1400 YpsIP31758_1401 YpsIP31758_1401 YpsIP31758_1401 1641223 1641339 + hypothetical protein identified by glimmer%3B putative gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1401 YpsIP31758_1402 YpsIP31758_1402 sixA sixA 1641790 1642281 + phosphohistidine phosphatase SixA identified by match to protein family HMM PF00300%3B match to protein family HMM TIGR00249 gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1402 YpsIP31758_1403 YpsIP31758_1403 YpsIP31758_1403 1642533 1643063 - Smr domain protein identified by match to protein family HMM PF01713 gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1403 YpsIP31758_1404 YpsIP31758_1404 YpsIP31758_1404 1643433 1644365 + methyltransferase%2C HemK family identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536 gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1404 YpsIP31758_1405 YpsIP31758_1405 aroC aroC 1644442 1645527 + chorismate synthase identified by match to protein family HMM PF01264%3B match to protein family HMM TIGR00033 gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1405 YpsIP31758_1406 YpsIP31758_1406 YpsIP31758_1406 1645533 1646360 + peptidoglycan amidase MepA identified by match to protein family HMM PF03411 gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1406 YpsIP31758_1407 YpsIP31758_1407 YpsIP31758_1407 1646364 1647170 + putative membrane protein identified by match to protein family HMM PF01925 gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1407 YpsIP31758_1408 YpsIP31758_1408 YpsIP31758_1408 1647270 1647812 + conserved hypothetical protein identified by similarity to SP:P76938%3B match to protein family HMM PF04315 gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1408 YpsIP31758_1409 YpsIP31758_1409 YpsIP31758_1409 1647870 1648148 + conserved hypothetical protein identified by similarity to SP:P64540 gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1409 YpsIP31758_1410 YpsIP31758_1410 YpsIP31758_1410 1648326 1650395 - FAD dependent oxidoreductase identified by match to protein family HMM PF01266%3B match to protein family HMM PF05430%3B match to protein family HMM TIGR03197 gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1410 YpsIP31758_1411 YpsIP31758_1411 fabB fabB 1650567 1651790 + 3-oxoacyl-(acyl-carrier-protein) synthase I identified by similarity to GB:CAA09934.1%3B match to protein family HMM PF00109%3B match to protein family HMM PF02801 gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1411 YpsIP31758_1412 YpsIP31758_1412 YpsIP31758_1412 1652197 1652889 - aspartate racemase family protein identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00035 gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1412 YpsIP31758_1413 YpsIP31758_1413 YpsIP31758_1413 1653680 1654210 + fimbria protein identified by similarity to SP:P13421%3B match to protein family HMM PF00419 gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1413 YpsIP31758_1414 YpsIP31758_1414 YpsIP31758_1414 1654738 1655775 - Div-like protein identified by similarity to SP:P15286 gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1414 YpsIP31758_1415 YpsIP31758_1415 YpsIP31758_1415 1656060 1656977 - integral membrane protein identified by match to protein family HMM PF00892 gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1415 YpsIP31758_1416 YpsIP31758_1416 YpsIP31758_1416 1657055 1657174 + hypothetical protein identified by glimmer%3B putative gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1416 YpsIP31758_1417 YpsIP31758_1417 YpsIP31758_1417 1657161 1657946 + transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165%3B match to protein family HMM PF07883 gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1417 YpsIP31758_1418 YpsIP31758_1418 pdxB pdxB 1657993 1659120 + erythronate-4-phosphate dehydrogenase identified by similarity to SP:P05459%3B match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1418 YpsIP31758_1419 YpsIP31758_1419 YpsIP31758_1419 1659290 1660300 + aspartate-semialdehyde dehydrogenase family protein identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774 gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1419 YpsIP31758_1420 YpsIP31758_1420 truA truA 1660405 1661199 + tRNA pseudouridine synthase A identified by match to protein family HMM PF01416%3B match to protein family HMM TIGR00071 gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1420 YpsIP31758_1421 YpsIP31758_1421 YpsIP31758_1421 1661356 1662018 + DedA protein DedA is encoded by a gene in the hisT operon.%3B identified by similarity to SP:P0ABP7 gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1421 YpsIP31758_1422 YpsIP31758_1422 accD accD 1662249 1663163 + acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit identified by match to protein family HMM TIGR00515 gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1422 YpsIP31758_1423 YpsIP31758_1423 folC folC 1663412 1664716 + FolC bifunctional protein identified by similarity to SP:P08192%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01499 gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1423 YpsIP31758_1424 YpsIP31758_1424 YpsIP31758_1424 1664836 1665558 + sporulation and cell division repeat protein identified by match to protein family HMM PF05036 gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1424 YpsIP31758_1425 YpsIP31758_1425 cvpA cvpA 1665870 1666379 + colicin V production protein identified by similarity to SP:P08550%3B match to protein family HMM PF02674 gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1425 YpsIP31758_1426 YpsIP31758_1426 purF purF 1666392 1667909 + amidophosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134 gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1426 YpsIP31758_1427 YpsIP31758_1427 ubiX ubiX 1668171 1668743 + 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified by similarity to SP:P09550%3B match to protein family HMM PF02441%3B match to protein family HMM TIGR00421 gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1427 YpsIP31758_1428 YpsIP31758_1428 hisJ hisJ 1669247 1670029 + histidine ABC transporter%2C periplasmic histidine-binding protein identified by similarity to SP:P0AEU0%3B match to protein family HMM PF00497%3B match to protein family HMM TIGR01096 gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1428 YpsIP31758_1429 YpsIP31758_1429 hisQ hisQ 1670125 1670811 + histidine ABC transporter%2C permease protein HisQ identified by similarity to SP:P52094%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1429 YpsIP31758_1430 YpsIP31758_1430 hisM hisM 1670808 1671524 + histidine ABC transporter%2C permease protein HisM identified by similarity to SP:P0AEU6%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1430 YpsIP31758_1431 YpsIP31758_1431 hisP hisP 1671538 1672335 + histidine ABC transporter%2C ATP-binding protein identified by similarity to SP:P07109%3B match to protein family HMM PF00005 gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1431 YpsIP31758_1432 YpsIP31758_1432 YpsIP31758_1432 1672466 1673374 - NAD dependent epimerase/dehydratase family protein identified by similarity to SP:P77775%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM TIGR01777 gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1432 YpsIP31758_1433 YpsIP31758_1433 YpsIP31758_1433 1673728 1674420 + cyclic diguanylate phosphodiesterase (EAL) domain protein identified by match to protein family HMM PF00563 gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1433 YpsIP31758_1434 YpsIP31758_1434 YpsIP31758_1434 1674608 1675159 + phosphodiesterase%2C MJ0936 family identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00040 gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1434 YpsIP31758_1435 YpsIP31758_1435 YpsIP31758_1435 1675160 1675312 - hypothetical protein identified by glimmer%3B putative gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1435 YpsIP31758_1436 YpsIP31758_1436 YpsIP31758_1436 1675381 1675929 + hydrolase%2C NUDIX family identified by match to protein family HMM PF00293 gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1436 YpsIP31758_1437 YpsIP31758_1437 YpsIP31758_1437 1676046 1677302 - putative sugar-specific permease%2C SgaT/UlaA family identified by match to protein family HMM PF04215 gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1437 YpsIP31758_1438 YpsIP31758_1438 YpsIP31758_1438 1677315 1677602 - PTS system%2C lactose/cellobiose specific IIB subunit identified by match to protein family HMM PF02302 gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1438 YpsIP31758_1439 YpsIP31758_1439 YpsIP31758_1439 1677665 1677784 - hypothetical protein identified by glimmer%3B putative gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1439 YpsIP31758_1440 YpsIP31758_1440 cmtB cmtB 1677771 1678214 - mannitol-specific cryptic phosphotransferase enzyme IIA component identified by similarity to SP:P69824%3B match to protein family HMM PF00359 gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1440 YpsIP31758_1441 YpsIP31758_1441 YpsIP31758_1441 1678581 1679615 + sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1441 YpsIP31758_1442 YpsIP31758_1442 pta pta 1679881 1682034 - phosphate acetyltransferase identified by match to protein family HMM PF01515%3B match to protein family HMM PF07085%3B match to protein family HMM TIGR00651 gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1442 YpsIP31758_1443 YpsIP31758_1443 ackA ackA 1682202 1683404 - acetate kinase identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016 gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1443 YpsIP31758_1444 YpsIP31758_1444 YpsIP31758_1444 1683826 1684281 + conserved hypothetical protein identified by similarity to SP:Q668Z2%3B match to protein family HMM PF04217 gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1444 YpsIP31758_1445 YpsIP31758_1445 YpsIP31758_1445 1684681 1685175 + YfbU domain protein identified by match to protein family HMM PF03887 gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1445 YpsIP31758_1446 YpsIP31758_1446 YpsIP31758_1446 1685340 1685996 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 identified by similarity to SP:P77625%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1446 YpsIP31758_1447 YpsIP31758_1447 YpsIP31758_1447 1686288 1688120 + citrate transporter family protein identified by match to protein family HMM PF02080%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808 gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1447 YpsIP31758_1448 YpsIP31758_1448 YpsIP31758_1448 1688546 1688788 + hypothetical protein identified by glimmer%3B putative gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1448 YpsIP31758_1449 YpsIP31758_1449 yfbR yfbR 1688835 1689428 - 5'-nucleotidase YfbR identified by similarity to SP:P76491%3B match to protein family HMM PF01966 gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1449 YpsIP31758_1450 YpsIP31758_1450 YpsIP31758_1450 1689579 1690793 - aminotransferase%2C class I and II identified by match to protein family HMM PF00155 gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1450 YpsIP31758_1451 YpsIP31758_1451 YpsIP31758_1451 1691046 1691162 - hypothetical protein identified by glimmer%3B putative gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1451 YpsIP31758_1452 YpsIP31758_1452 lrhA lrhA 1691650 1692579 + transcriptional regulator LrhA identified by similarity to SP:P36771%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1452 YpsIP31758_1453 YpsIP31758_1453 YpsIP31758_1453 1692725 1692859 + hypothetical protein identified by glimmer%3B putative gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1453 YpsIP31758_1454 YpsIP31758_1454 nuoA nuoA 1693257 1693757 + NADH-quinone oxidoreductase%2C A subunit identified by similarity to SP:P33597%3B match to protein family HMM PF00507 gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1454 YpsIP31758_1455 YpsIP31758_1455 nuoB nuoB 1693859 1694542 + NADH-quinone oxidoreductase%2C B subunit identified by match to protein family HMM PF01058%3B match to protein family HMM TIGR01957 gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1455 YpsIP31758_1456 YpsIP31758_1456 nuoCD nuoCD 1694685 1696481 + NADH-quinone oxidoreductase%2C C/D subunit identified by similarity to SP:P33599%3B match to protein family HMM PF00329%3B match to protein family HMM PF00346%3B match to protein family HMM TIGR01961%3B match to protein family HMM TIGR01962 gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1456 YpsIP31758_1457 YpsIP31758_1457 nuoE nuoE 1696548 1697047 + NADH-quinone oxidoreductase%2C E subunit%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P33601%3B match to protein family HMM PF01257%3B match to protein family HMM TIGR01958 pseudogene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1457 YpsIP31758_1458 YpsIP31758_1458 nuoF nuoF 1697044 1698429 + NADH-quinone oxidoreductase%2C F subunit identified by similarity to SP:P31979%3B match to protein family HMM PF01512%3B match to protein family HMM TIGR01959 gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1458 YpsIP31758_1459 YpsIP31758_1459 nuoG nuoG 1698516 1701260 + NADH-quinone oxidoreductase%2C G subunit identified by similarity to SP:P33602%3B match to protein family HMM PF00111%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01973 gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1459 YpsIP31758_1460 YpsIP31758_1460 nuoH nuoH 1701257 1702234 + NADH-quinone oxidoreductase%2C H subunit identified by similarity to SP:P33603%3B match to protein family HMM PF00146 gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1460 YpsIP31758_1461 YpsIP31758_1461 nuoI nuoI 1702249 1702791 + NADH-quinone oxidoreductase%2C I subunit identified by similarity to SP:P33604%3B match to protein family HMM PF00037%3B match to protein family HMM TIGR01971 gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1461 YpsIP31758_1462 YpsIP31758_1462 nuoJ nuoJ 1702804 1703349 + NADH-quinone oxidoreductase%2C J subunit identified by similarity to SP:P33605%3B match to protein family HMM PF00499 gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1462 YpsIP31758_1463 YpsIP31758_1463 nuoK nuoK 1703346 1703648 + NADH-quinone oxidoreductase%2C K subunit identified by similarity to SP:P33606%3B match to protein family HMM PF00420 gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1463 YpsIP31758_1464 YpsIP31758_1464 nuoL nuoL 1703645 1705489 + NADH-quinone oxidoreductase%2C L subunit identified by match to protein family HMM PF00361%3B match to protein family HMM PF00662%3B match to protein family HMM TIGR01974 gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1464 YpsIP31758_1465 YpsIP31758_1465 nuoM nuoM 1705529 1707061 + NADH-quinone oxidoreductase%2C M subunit identified by similarity to SP:P31978%3B match to protein family HMM PF00361%3B match to protein family HMM TIGR01972 gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1465 YpsIP31758_1466 YpsIP31758_1466 nuoN nuoN 1707068 1708531 + NADH-quinone oxidoreductase%2C N subunit identified by similarity to SP:P33608%3B match to protein family HMM PF00361%3B match to protein family HMM TIGR01770 gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1466 YpsIP31758_1467 YpsIP31758_1467 YpsIP31758_1467 1708769 1709962 + conserved hypothetical protein identified by similarity to GB:AAS62558.1 gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1467 YpsIP31758_1468 YpsIP31758_1468 YpsIP31758_1468 1710300 1710767 - conserved hypothetical protein identified by similarity to GB:CAH21811.1%3B match to protein family HMM PF04074%3B match to protein family HMM TIGR00022 gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1468 YpsIP31758_1469 YpsIP31758_1469 idnK idnK 1710845 1711381 - thermosensitive gluconokinase identified by similarity to SP:P39208%3B match to protein family HMM PF01202%3B match to protein family HMM TIGR01313 gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1469 YpsIP31758_1470 YpsIP31758_1470 idnO idnO 1711430 1712194 - gluconate 5-dehydrogenase identified by similarity to SP:P50199%3B match to protein family HMM PF00106 gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1470 YpsIP31758_1471 YpsIP31758_1471 YpsIP31758_1471 1712678 1712791 - hypothetical protein identified by glimmer%3B putative gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1471 YpsIP31758_1472 YpsIP31758_1472 YpsIP31758_1472 1712954 1714237 - putative lipoprotein identified by similarity to GB:CAG75143.1%3B match to protein family HMM PF02638 gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1472 YpsIP31758_1473 YpsIP31758_1473 idnR idnR 1714706 1715698 + L-idonate regulatory protein identified by similarity to SP:P39343%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1473 YpsIP31758_1474 YpsIP31758_1474 YpsIP31758_1474 1715835 1715957 - hypothetical protein identified by glimmer%3B putative gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1474 YpsIP31758_1475 YpsIP31758_1475 YpsIP31758_1475 1716162 1717112 + D-isomer specific 2-hydroxyacid dehydrogenase family protein identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1475 YpsIP31758_1476 YpsIP31758_1476 edd edd 1717691 1719562 + phosphogluconate dehydratase identified by match to protein family HMM PF00920%3B match to protein family HMM TIGR01196 gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1476 YpsIP31758_1477 YpsIP31758_1477 YpsIP31758_1477 1719781 1719924 - putative membrane protein gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1477 YpsIP31758_1478 YpsIP31758_1478 YpsIP31758_1478 1720141 1720308 - hypothetical protein identified by glimmer%3B putative gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1478 YpsIP31758_1479 YpsIP31758_1479 YpsIP31758_1479 1720492 1720800 + conserved hypothetical protein identified by similarity to SP:P0AEH5%3B match to protein family HMM PF05957 gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1479 YpsIP31758_1480 YpsIP31758_1480 rhiA rhiA 1721355 1721999 + protein RhiA identified by similarity to SP:Q03313 gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1480 YpsIP31758_1481 YpsIP31758_1481 menF menF 1722532 1723899 + menaquinone-specific isochorismate synthase identified by similarity to SP:P38051%3B match to protein family HMM PF00425%3B match to protein family HMM TIGR00543 gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1481 YpsIP31758_1482 YpsIP31758_1482 menD menD 1724127 1725830 + 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase identified by match to protein family HMM TIGR00173 gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1482 YpsIP31758_1483 YpsIP31758_1483 YpsIP31758_1483 1725827 1726645 + hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1483 YpsIP31758_1484 YpsIP31758_1484 menB menB 1726659 1727516 + naphthoate synthase identified by similarity to SP:P0ABU0%3B match to protein family HMM PF00378%3B match to protein family HMM TIGR01929 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1484 YpsIP31758_1485 YpsIP31758_1485 menC menC 1727516 1728487 + o-succinylbenzoic acid (OSB) synthetase identified by match to protein family HMM TIGR01927 gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1485 YpsIP31758_1486 YpsIP31758_1486 menE menE 1728475 1729890 + O-succinylbenzoate-CoA ligase identified by match to protein family HMM PF00501%3B match to protein family HMM TIGR01923 gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1486 YpsIP31758_1487 YpsIP31758_1487 YpsIP31758_1487 1729956 1730915 + glycosyl transferase domain protein identified by match to protein family HMM PF02885 gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1487 YpsIP31758_1488 YpsIP31758_1488 YpsIP31758_1488 1731297 1731557 - conserved hypothetical protein identified by similarity to SP:P0AB40%3B match to protein family HMM PF07338 gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1488 YpsIP31758_1489 YpsIP31758_1489 YpsIP31758_1489 1731148 1731306 + hypothetical protein identified by glimmer%3B putative gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1489 YpsIP31758_1490 YpsIP31758_1490 YpsIP31758_1490 1731636 1731788 - hypothetical protein identified by glimmer%3B putative gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1490 YpsIP31758_1491 YpsIP31758_1491 YpsIP31758_1491 1731845 1732855 + conserved hypothetical protein identified by similarity to GB:CAH21791.1%3B match to protein family HMM PF05971 gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1491 YpsIP31758_1492 YpsIP31758_1492 YpsIP31758_1492 1733652 1734956 + methyl-accepting chemotaxis transducer/sensory box protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229 gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1492 YpsIP31758_1493 YpsIP31758_1493 glnQ glnQ 1735184 1735906 - glutamine ABC transporter%2C ATP-binding protein identified by similarity to SP:P10346%3B match to protein family HMM PF00005 gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1493 YpsIP31758_1494 YpsIP31758_1494 glnP glnP 1735903 1736559 - glutamine ABC transporter%2C permease protein identified by similarity to SP:P0AEQ9%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1494 YpsIP31758_1495 YpsIP31758_1495 glnH glnH 1736594 1737337 - glutamine ABC transporter%2C periplasmic glutamine-binding protein identified by similarity to SP:P0AEQ3%3B match to protein family HMM PF00497%3B match to protein family HMM TIGR01096 gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1495 YpsIP31758_1496 YpsIP31758_1496 YpsIP31758_1496 1737907 1739034 - conserved hypothetical protein identified by similarity to RF:YP_206043.1%3B match to protein family HMM PF02698 gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1496 YpsIP31758_1497 YpsIP31758_1497 YpsIP31758_1497 1739354 1739857 - ferritin family protein identified by match to protein family HMM PF00210 gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1497 YpsIP31758_1498 YpsIP31758_1498 tam tam 1740114 1740890 - trans-aconitate 2-methyltransferase identified by similarity to SP:P76145 gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1498 YpsIP31758_1499 YpsIP31758_1499 YpsIP31758_1499 1740913 1741410 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1499 YpsIP31758_1500 YpsIP31758_1500 YpsIP31758_1500 1741426 1742313 - integral membrane protein identified by match to protein family HMM PF00892 gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1500 YpsIP31758_1501 YpsIP31758_1501 ompX ompX 1742718 1743242 + outer membrane protein X identified by similarity to SP:P0A917%3B match to protein family HMM PF06316%3B match to protein family HMM TIGR03304 gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1501 YpsIP31758_1502 YpsIP31758_1502 YpsIP31758_1502 1743558 1744496 + cation diffusion facilitator family transporter identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1502 YpsIP31758_1503 YpsIP31758_1503 YpsIP31758_1503 1744734 1745306 + conserved hypothetical protein gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1503 YpsIP31758_1504 YpsIP31758_1504 YpsIP31758_1504 1745325 1745456 - hypothetical protein identified by glimmer%3B putative gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1504 YpsIP31758_1505 YpsIP31758_1505 YpsIP31758_1505 1745493 1746155 + hypothetical protein identified by glimmer%3B putative gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1505 YpsIP31758_1506 YpsIP31758_1506 YpsIP31758_1506 1746825 1748051 + oxidoreductase%2C zinc-binding dehydrogenase family protein identified by match to protein family HMM PF00107 gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1506 YpsIP31758_1507 YpsIP31758_1507 rbsB2 rbsB2 1748226 1749143 + ribose ABC transporter%2C periplasmic ribose-binding protein identified by similarity to SP:P36949%3B match to protein family HMM PF00532 gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1507 YpsIP31758_1508 YpsIP31758_1508 rbsA2 rbsA2 1749200 1750690 + ribose ABC transporter%2C ATP-binding protein identified by similarity to SP:P36947%3B match to protein family HMM PF00005 gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1508 YpsIP31758_1509 YpsIP31758_1509 rbsC2 rbsC2 1750687 1751679 + ribose ABC transporter%2C permease protein identified by similarity to SP:P36948%3B match to protein family HMM PF02653 gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1509 YpsIP31758_1510 YpsIP31758_1510 YpsIP31758_1510 1751829 1752833 - sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1510 YpsIP31758_1511 YpsIP31758_1511 YpsIP31758_1511 1753205 1754146 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1511 YpsIP31758_1512 YpsIP31758_1512 YpsIP31758_1512 1754249 1755334 + tartrate dehydrogenase identified by similarity to SP:Q51945%3B match to protein family HMM PF00180%3B match to protein family HMM TIGR02089 gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1512 YpsIP31758_1513 YpsIP31758_1513 YpsIP31758_1513 1755403 1755585 + hypothetical protein identified by glimmer%3B putative gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1513 YpsIP31758_1514 YpsIP31758_1514 YpsIP31758_1514 1755594 1755764 + hypothetical protein identified by glimmer%3B putative gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1514 YpsIP31758_1515 YpsIP31758_1515 YpsIP31758_1515 1755964 1757610 + transporter%2C betaine/carnitine/choline transporter (BCCT) family protein identified by match to protein family HMM PF02028%3B match to protein family HMM TIGR00842 gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1515 YpsIP31758_1516 YpsIP31758_1516 YpsIP31758_1516 1757727 1758851 + rieske 2Fe-2S domain protein identified by match to protein family HMM PF00355 gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1516 YpsIP31758_1517 YpsIP31758_1517 YpsIP31758_1517 1758944 1759909 + oxidoreductase FAD/NAD binding/2Fe-2S iron-sulfur cluster binding domain protein identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1517 YpsIP31758_1518 YpsIP31758_1518 YpsIP31758_1518 1760564 1762252 + haemolysin secretion/activation protein%2C ShlB/FhaC/HecB family identified by match to protein family HMM PF03865 gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1518 YpsIP31758_1519 YpsIP31758_1519 YpsIP31758_1519 1762407 1770173 + haemagglutinin/adhesin repeat protein identified by match to protein family HMM PF05594%3B match to protein family HMM PF05860%3B match to protein family HMM TIGR01731%3B match to protein family HMM TIGR01901 gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1519 YpsIP31758_1520 YpsIP31758_1520 YpsIP31758_1520 1770173 1770523 + conserved hypothetical protein gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1520 YpsIP31758_1521 YpsIP31758_1521 YpsIP31758_1521 1770610 1771803 + conserved domain protein gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1521 YpsIP31758_1522 YpsIP31758_1522 YpsIP31758_1522 1772076 1772606 + conserved hypothetical protein gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1522 YpsIP31758_1523 YpsIP31758_1523 YpsIP31758_1523 1772618 1772743 + conserved hypothetical protein gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1523 YpsIP31758_1524 YpsIP31758_1524 YpsIP31758_1524 1772871 1773950 - carbohydrate uptake (CUT1 family) ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1524 YpsIP31758_1525 YpsIP31758_1525 manB2 manB2 1774050 1775438 - phosphomannomutase identified by similarity to SP:Q01411%3B match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880 gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1525 YpsIP31758_1526 YpsIP31758_1526 YpsIP31758_1526 1775455 1776495 - transcriptional regulator%2C lacI family identified by match to protein family HMM PF00532 gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1526 YpsIP31758_1527 YpsIP31758_1527 YpsIP31758_1527 1776767 1778053 + carbohydrate uptake (CUT1 family) ABC transporter%2C periplasmic carbohydrate-binding protein identified by match to protein family HMM PF01547 gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1527 YpsIP31758_1528 YpsIP31758_1528 YpsIP31758_1528 1778162 1779037 + carbohydrate uptake (CUT1 family) ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1528 YpsIP31758_1529 YpsIP31758_1529 YpsIP31758_1529 1779038 1779862 + carbohydrate uptake (CUT1 family) ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1529 YpsIP31758_1530 YpsIP31758_1530 YpsIP31758_1530 1780009 1781064 + conserved hypothetical protein identified by similarity to GB:BAD77555.1%3B match to protein family HMM PF04041 gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1530 YpsIP31758_1531 YpsIP31758_1531 YpsIP31758_1531 1781091 1782029 + conserved hypothetical protein gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1531 YpsIP31758_1532 YpsIP31758_1532 YpsIP31758_1532 1782152 1783267 + hypothetical protein identified by glimmer%3B putative gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1532 YpsIP31758_1533 YpsIP31758_1533 YpsIP31758_1533 1783306 1784580 + conserved hypothetical protein gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1533 YpsIP31758_1534 YpsIP31758_1534 YpsIP31758_1534 1785139 1786383 - transporter%2C small conductance mechanosensitive ion channel (MscS) family identified by match to protein family HMM PF00924 gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1534 YpsIP31758_1535 YpsIP31758_1535 cas1 cas1 1788553 1789533 + crispr-associated protein Cas1 identified by match to protein family HMM TIGR00287 gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1535 YpsIP31758_1536 YpsIP31758_1536 YpsIP31758_1536 1789530 1792817 + crispr-associated helicase Cas3%2C yersinia-type identified by match to protein family HMM TIGR02562 gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1536 YpsIP31758_1537 YpsIP31758_1537 YpsIP31758_1537 1792973 1794319 + crispr-associated protein%2C Csy1 family identified by match to protein family HMM TIGR02564 gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1537 YpsIP31758_1538 YpsIP31758_1538 YpsIP31758_1538 1794316 1795266 + crispr-associated protein%2C Csy2 family identified by match to protein family HMM TIGR02565 gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1538 YpsIP31758_1539 YpsIP31758_1539 YpsIP31758_1539 1795284 1796288 + crispr-associated protein%2C Csy3 family identified by match to protein family HMM TIGR02566 gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1539 YpsIP31758_1540 YpsIP31758_1540 YpsIP31758_1540 1796299 1796853 + crispr-associated protein%2C Csy4 family identified by match to protein family HMM TIGR02563 gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1540 YpsIP31758_1541 YpsIP31758_1541 YpsIP31758_1541 1796931 1797950 - oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1541 YpsIP31758_1542 YpsIP31758_1542 YpsIP31758_1542 1797961 1798464 - conserved hypothetical protein identified by match to protein family HMM TIGR03126 gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1542 YpsIP31758_1543 YpsIP31758_1543 YpsIP31758_1543 1798511 1799869 - transporter%2C major facilitator family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1543 YpsIP31758_1544 YpsIP31758_1544 YpsIP31758_1544 1801226 1801393 - hypothetical protein identified by glimmer%3B putative gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1544 YpsIP31758_1545 YpsIP31758_1545 YpsIP31758_1545 1800317 1801243 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1545 YpsIP31758_1546 YpsIP31758_1546 ypsI ypsI 1802459 1803103 - N-acylhomoserine lactone synthase YpsI identified by similarity to SP:P52988%3B similarity to GB:AAD40486.1%3B match to protein family HMM PF00765 gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1546 YpsIP31758_1547 YpsIP31758_1547 YpsIP31758_1547 1801729 1802466 + transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00196%3B match to protein family HMM PF03472 gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1547 YpsIP31758_1548 YpsIP31758_1548 YpsIP31758_1548 1803534 1804460 + integral membrane protein identified by match to protein family HMM PF00892 gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1548 YpsIP31758_1549 YpsIP31758_1549 YpsIP31758_1549 1804592 1806319 - transporter%2C monovalent cation:proton antiporter-2 (CPA2) family identified by match to protein family HMM PF00999%3B match to protein family HMM PF02080%3B match to protein family HMM PF03471 gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1549 YpsIP31758_1550 YpsIP31758_1550 YpsIP31758_1550 1806663 1806908 - hypothetical protein identified by glimmer%3B putative gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1550 YpsIP31758_1551 YpsIP31758_1551 YpsIP31758_1551 1807468 1807851 - glucans biosynthesis protein C%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:P75920 pseudogene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1551 YpsIP31758_1552 YpsIP31758_1552 mdoG mdoG 1808388 1809923 + periplasmic glucans biosynthesis protein MdoG identified by similarity to SP:P33136%3B match to protein family HMM PF04349 gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1552 YpsIP31758_1553 YpsIP31758_1553 mdoH mdoH 1809961 1812525 + glucans biosynthesis glucosyltransferase H identified by similarity to SP:P62517%3B match to protein family HMM PF00535 gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1553 YpsIP31758_1554 YpsIP31758_1554 YpsIP31758_1554 1812558 1812890 + conserved hypothetical protein identified by match to protein family HMM PF07119 gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1554 YpsIP31758_1555 YpsIP31758_1555 YpsIP31758_1555 1813069 1814607 - proton dependent peptide transporter identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924 gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1555 YpsIP31758_1556 YpsIP31758_1556 htrB1 htrB1 1815346 1816266 - lipid A biosynthesis lauroyl acyltransferase identified by similarity to SP:P0ACV0%3B match to protein family HMM PF03279%3B match to protein family HMM TIGR02207 gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1556 YpsIP31758_1557 YpsIP31758_1557 YpsIP31758_1557 1816849 1816962 - conserved hypothetical protein gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1557 YpsIP31758_1558 YpsIP31758_1558 YpsIP31758_1558 1816968 1817372 + conserved hypothetical protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1558 YpsIP31758_1559 YpsIP31758_1559 YpsIP31758_1559 1817559 1817687 + conserved hypothetical protein gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1559 YpsIP31758_1560 YpsIP31758_1560 YpsIP31758_1560 1817731 1818798 + rhodanese domain protein identified by similarity to SP:P24188%3B match to protein family HMM PF00581 gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1560 YpsIP31758_1561 YpsIP31758_1561 YpsIP31758_1561 1818947 1820005 + putative membrane protein identified by match to protein family HMM PF01594 gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1561 YpsIP31758_1562 YpsIP31758_1562 YpsIP31758_1562 1820120 1820233 - putative membrane protein gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1562 YpsIP31758_1563 YpsIP31758_1563 YpsIP31758_1563 1820577 1821161 - transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00196 gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1563 YpsIP31758_1564 YpsIP31758_1564 solA solA 1821428 1822543 - N-methyl-L-tryptophan oxidase identified by similarity to SP:P40874%3B match to protein family HMM PF01266 gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1564 YpsIP31758_1565 YpsIP31758_1565 YpsIP31758_1565 1822794 1823048 - conserved hypothetical protein identified by similarity to GB:CAH21722.1 gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1565 YpsIP31758_1566 YpsIP31758_1566 dinI dinI 1823554 1823799 - DNA-damage-inducible protein I identified by similarity to SP:P0ABR1%3B match to protein family HMM PF06183 gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1566 YpsIP31758_1567 YpsIP31758_1567 pyrC pyrC 1824112 1825158 - dihydroorotase%2C homodimeric type identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR00856 gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1567 YpsIP31758_1568 YpsIP31758_1568 YpsIP31758_1568 1825393 1825680 + antibiotic biosynthesis monooxygenase domain protein identified by match to protein family HMM PF03992 gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1568 YpsIP31758_1569 YpsIP31758_1569 rne rne 1825938 1829588 - ribonuclease E identified by similarity to SP:P21513%3B match to protein family HMM PF00575%3B match to protein family HMM TIGR00757 gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1569 YpsIP31758_1570 YpsIP31758_1570 rluC rluC 1830163 1831125 + ribosomal large subunit pseudouridine synthase C identified by similarity to SP:P0AA39%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1570 YpsIP31758_1571 YpsIP31758_1571 maf1 maf1 1831248 1831844 - septum formation protein Maf identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1571 YpsIP31758_1572 YpsIP31758_1572 YpsIP31758_1572 1831836 1831973 + hypothetical protein identified by glimmer%3B putative gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1572 YpsIP31758_1573 YpsIP31758_1573 YpsIP31758_1573 1831986 1832510 + conserved hypothetical protein identified by match to protein family HMM PF02620 gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1573 YpsIP31758_1574 YpsIP31758_1574 rpmF rpmF 1832523 1832690 + ribosomal protein L32 identified by match to protein family HMM PF01783%3B match to protein family HMM TIGR01031 gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1574 YpsIP31758_1575 YpsIP31758_1575 plsX plsX 1832724 1833758 + fatty acid/phospholipid synthesis protein PlsX identified by match to protein family HMM PF02504%3B match to protein family HMM TIGR00182 gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1575 YpsIP31758_1576 YpsIP31758_1576 fabH fabH 1833765 1834715 + 3-oxoacyl-[acyl-carrier-protein] synthase III identified by match to protein family HMM TIGR00747 gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1576 YpsIP31758_1577 YpsIP31758_1577 fabD fabD 1834753 1835682 + malonyl CoA-acyl carrier protein transacylase identified by match to protein family HMM PF00698%3B match to protein family HMM TIGR00128 gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1577 YpsIP31758_1578 YpsIP31758_1578 fabG fabG 1835696 1836430 + 3-oxoacyl-(acyl-carrier-protein) reductase identified by match to protein family HMM PF00106%3B match to protein family HMM TIGR01830 gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1578 YpsIP31758_1579 YpsIP31758_1579 acpP acpP 1836584 1836820 + acyl carrier protein identified by match to protein family HMM PF00550%3B match to protein family HMM TIGR00517 gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1579 YpsIP31758_1580 YpsIP31758_1580 fabF fabF 1836915 1838156 + 3-oxoacyl-(acyl-carrier-protein) synthase 2 identified by similarity to SP:P0AAI5%3B match to protein family HMM PF00109%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR03150 gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1580 YpsIP31758_1581 YpsIP31758_1581 pabC pabC 1838518 1839324 + aminodeoxychorismate lyase identified by similarity to SP:P28305%3B match to protein family HMM PF01063 gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1581 YpsIP31758_1582 YpsIP31758_1582 YpsIP31758_1582 1839441 1840466 + conserved hypothetical protein TIGR00247 identified by similarity to RF:NP_669080.1%3B match to protein family HMM PF02618%3B match to protein family HMM TIGR00247 gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1582 YpsIP31758_1583 YpsIP31758_1583 tmk tmk 1840456 1841094 + thymidylate kinase identified by similarity to SP:O69169%3B match to protein family HMM PF02223%3B match to protein family HMM TIGR00041 gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1583 YpsIP31758_1584 YpsIP31758_1584 holB holB 1841094 1842116 + DNA polymerase III%2C delta' subunit identified by match to protein family HMM TIGR00678 gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1584 YpsIP31758_1585 YpsIP31758_1585 YpsIP31758_1585 1842131 1842940 + hydrolase%2C TatD family identified by match to protein family HMM PF01026%3B match to protein family HMM TIGR00010 gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1585 YpsIP31758_1586 YpsIP31758_1586 ptsG ptsG 1843245 1844678 + PTS system%2C glucose-specific IIBC component identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR00852%3B match to protein family HMM TIGR02002 gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1586 YpsIP31758_1587 YpsIP31758_1587 YpsIP31758_1587 1845059 1845877 + putative shikimate 5-dehydrogenase identified by match to protein family HMM PF01488 gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1587 YpsIP31758_1588 YpsIP31758_1588 hinT hinT 1846051 1846404 + histidine triad nucleotide-binding protein HinT identified by similarity to SP:P0ACE7%3B match to protein family HMM PF01230 gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1588 YpsIP31758_1589 YpsIP31758_1589 YpsIP31758_1589 1846439 1846828 + putative lipoprotein identified by match to protein family HMM PF07233 gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1589 YpsIP31758_1590 YpsIP31758_1590 YpsIP31758_1590 1846869 1847444 + putative lipoprotein identified by match to protein family HMM TIGR02722 gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1590 YpsIP31758_1591 YpsIP31758_1591 thiK thiK 1847425 1848291 + thiamine kinase identified by match to protein family HMM PF01633%3B match to protein family HMM PF01636%3B match to protein family HMM TIGR02721 gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1591 YpsIP31758_1592 YpsIP31758_1592 nagZ nagZ 1848362 1849393 + beta-hexosaminidase identified by similarity to SP:P75949%3B match to protein family HMM PF00933 gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1592 YpsIP31758_1593 YpsIP31758_1593 YpsIP31758_1593 1849521 1850063 + conserved hypothetical protein identified by match to protein family HMM PF05728 gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1593 YpsIP31758_1594 YpsIP31758_1594 ndh ndh 1850437 1851741 + NADH dehydrogenase identified by similarity to SP:P00393%3B match to protein family HMM PF00070%3B match to protein family HMM PF07992 gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1594 YpsIP31758_1595 YpsIP31758_1595 YpsIP31758_1595 1852267 1852971 + conserved hypothetical protein gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1595 YpsIP31758_1596 YpsIP31758_1596 YpsIP31758_1596 1852979 1853392 + conserved hypothetical protein identified by similarity to GB:CAG77220.1 gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1596 YpsIP31758_1597 YpsIP31758_1597 YpsIP31758_1597 1853703 1854242 + surface antigen domain protein identified by match to protein family HMM PF05433 gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1597 YpsIP31758_1598 YpsIP31758_1598 mfd mfd 1854481 1857927 - transcription-repair coupling factor identified by similarity to SP:P30958%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00580 gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1598 YpsIP31758_1599 YpsIP31758_1599 YpsIP31758_1599 1858045 1858164 - hypothetical protein identified by glimmer%3B putative gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1599 YpsIP31758_1600 YpsIP31758_1600 lolC lolC 1858197 1859399 + lipoprotein-releasing system%2C transmembrane protein lolC identified by similarity to SP:P0ADC3%3B match to protein family HMM PF02687%3B match to protein family HMM TIGR02212 gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1600 YpsIP31758_1601 YpsIP31758_1601 lolD lolD 1859392 1860096 + lipoprotein releasing system%2C ATP-binding protein identified by similarity to SP:P75957%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02211 gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1601 YpsIP31758_1602 YpsIP31758_1602 lolE lolE 1860096 1861343 + lipoprotein releasing system%2C transmembrane protein LolE identified by match to protein family HMM PF02687%3B match to protein family HMM TIGR02212%3B match to protein family HMM TIGR02213 gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1602 YpsIP31758_1603 YpsIP31758_1603 nagK nagK 1861362 1862276 + N-acetylglucosamine kinase identified by similarity to SP:P75959%3B match to protein family HMM PF00480 gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1603 YpsIP31758_1604 YpsIP31758_1604 YpsIP31758_1604 1862325 1863161 + NAD-dependent deacetylase-like protein identified by match to protein family HMM PF02146 gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1604 YpsIP31758_1605 YpsIP31758_1605 pepT2 pepT2 1863491 1864726 + peptidase T identified by similarity to SP:P26311%3B match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01882 gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1605 YpsIP31758_1606 YpsIP31758_1606 YpsIP31758_1606 1864959 1866080 - cupin family protein identified by match to protein family HMM PF08007 gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1606 YpsIP31758_1607 YpsIP31758_1607 phoQ phoQ 1866164 1867618 - sensor protein PhoQ identified by similarity to SP:P23837%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1607 YpsIP31758_1608 YpsIP31758_1608 phoP phoP 1867624 1868295 - transcriptional regulatory protein PhoP identified by similarity to SP:P23836%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1608 YpsIP31758_1609 YpsIP31758_1609 YpsIP31758_1609 1868506 1869129 - conserved hypothetical protein identified by similarity to GB:CAG23204.1 gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1609 YpsIP31758_1610 YpsIP31758_1610 purB purB 1869308 1870678 - adenylosuccinate lyase identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00928 gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1610 YpsIP31758_1611 YpsIP31758_1611 YpsIP31758_1611 1870739 1871365 - conserved hypothetical protein identified by similarity to GB:AAM85366.1%3B match to protein family HMM PF04356 gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1611 YpsIP31758_1612 YpsIP31758_1612 trmU trmU 1871423 1872538 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase identified by match to protein family HMM PF03054%3B match to protein family HMM TIGR00420 gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1612 YpsIP31758_1613 YpsIP31758_1613 YpsIP31758_1613 1872725 1873171 - hydrolase%2C NUDIX family identified by match to protein family HMM PF00293 gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1613 YpsIP31758_1614 YpsIP31758_1614 rluE rluE 1873164 1873790 - ribosomal large subunit pseudouridine synthase E identified by match to protein family HMM PF00849%3B match to protein family HMM TIGR00093 gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1614 YpsIP31758_1615 YpsIP31758_1615 icd icd 1873921 1875174 + isocitrate dehydrogenase%2C NADP-dependent identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00183 gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1615 YpsIP31758_1616 YpsIP31758_1616 YpsIP31758_1616 1875320 1876363 - sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1616 YpsIP31758_1617 YpsIP31758_1617 YpsIP31758_1617 1876623 1876883 - conserved hypothetical protein gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1617 YpsIP31758_1618 YpsIP31758_1618 YpsIP31758_1618 1877003 1878583 - methyl-accepting chemotaxis protein identified by similarity to SP:P50466%3B match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229 gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1618 YpsIP31758_1619 YpsIP31758_1619 YpsIP31758_1619 1879503 1880360 - transcriptional regulator%2C NmrA family identified by match to protein family HMM PF01073%3B match to protein family HMM PF04321%3B match to protein family HMM PF05368 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1619 YpsIP31758_1620 YpsIP31758_1620 YpsIP31758_1620 1880502 1880903 + putative transcriptional regulator identified by match to protein family HMM PF01638 gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1620 YpsIP31758_1621 YpsIP31758_1621 YpsIP31758_1621 1880961 1881128 + hypothetical protein identified by glimmer%3B putative gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1621 YpsIP31758_1622 YpsIP31758_1622 appA appA 1881435 1882760 + periplasmic AppA protein identified by similarity to SP:P07102%3B match to protein family HMM PF00328 gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1622 YpsIP31758_1623 YpsIP31758_1623 YpsIP31758_1623 1883076 1883279 - conserved hypothetical protein gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1623 YpsIP31758_1624 YpsIP31758_1624 YpsIP31758_1624 1883582 1884481 - conserved hypothetical protein gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1624 YpsIP31758_1625 YpsIP31758_1625 YpsIP31758_1625 1884573 1885022 - transcriptional regulator%2C AsnC family identified by match to protein family HMM PF01037 gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1625 YpsIP31758_1626 YpsIP31758_1626 YpsIP31758_1626 1885285 1885401 - putative membrane protein gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1626 YpsIP31758_1627 YpsIP31758_1627 YpsIP31758_1627 1885483 1886016 - conserved hypothetical protein gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1627 YpsIP31758_1628 YpsIP31758_1628 YpsIP31758_1628 1886300 1887310 - putative NAD(P)H quinone oxidoreductase%2C PIG3 family identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02824 gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1628 YpsIP31758_1629 YpsIP31758_1629 lacZ lacZ 1887718 1890918 - beta-galactosidase identified by similarity to SP:P81650%3B match to protein family HMM PF00703%3B match to protein family HMM PF02836%3B match to protein family HMM PF02837%3B match to protein family HMM PF02929 gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1629 YpsIP31758_1630 YpsIP31758_1630 dsrB dsrB 1891886 1892077 + DsrB protein identified by similarity to SP:P0AEG8 gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1630 YpsIP31758_1631 YpsIP31758_1631 YpsIP31758_1631 1892260 1893999 - methyl-accepting chemotaxis protein identified by similarity to SP:P05704%3B match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1631 YpsIP31758_1632 YpsIP31758_1632 YpsIP31758_1632 1895125 1895823 + putative transporter%2C Mg2+ transporter-C (MgtC) family identified by similarity to SP:P22037%3B match to protein family HMM PF02308 gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1632 YpsIP31758_1633 YpsIP31758_1633 mgtA mgtA 1896228 1898927 + magnesium-translocating P-type ATPase mgtB in Salmonella typhimurium%3B identified by similarity to GB:AAD16959.1%3B match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01524 gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1633 YpsIP31758_1634 YpsIP31758_1634 flhD flhD 1900115 1900465 + flagellar transcriptional activator FlhD identified by similarity to SP:P0A8S9%3B match to protein family HMM PF05247 gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1634 YpsIP31758_1635 YpsIP31758_1635 flhC flhC 1900469 1901050 + flagellar transcriptional activator FlhC identified by similarity to SP:P0ABY7%3B match to protein family HMM PF05280 gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1635 YpsIP31758_1636 YpsIP31758_1636 motA1 motA1 1901255 1902142 + chemotaxis protein motA identified by similarity to SP:P09348 gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1636 YpsIP31758_1637 YpsIP31758_1637 motB1 motB1 1902139 1903440 + chemotaxis MotB protein identified by similarity to SP:P09349%3B match to protein family HMM PF00691 gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1637 YpsIP31758_1638 YpsIP31758_1638 cheA cheA 1903451 1905604 + chemotaxis protein CheA identified by similarity to SP:P07363%3B match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895 gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1638 YpsIP31758_1639 YpsIP31758_1639 cheW cheW 1905767 1906264 + chemotaxis protein CheW identified by similarity to SP:P0A964%3B match to protein family HMM PF01584 gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1639 YpsIP31758_1640 YpsIP31758_1640 YpsIP31758_1640 1906884 1909748 + putative integral membrane protein gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1640 YpsIP31758_1641 YpsIP31758_1641 YpsIP31758_1641 1909817 1910518 + putative lipoprotein gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1641 YpsIP31758_1642 YpsIP31758_1642 tar tar 1910759 1912432 + methyl-accepting chemotaxis protein identified by similarity to SP:P02942%3B match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02203 gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1642 YpsIP31758_1643 YpsIP31758_1643 YpsIP31758_1643 1912616 1914226 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02203 gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1643 YpsIP31758_1644 YpsIP31758_1644 cheR cheR 1914453 1915271 + chemotaxis protein methyltransferase identified by similarity to SP:P07801%3B match to protein family HMM PF01739%3B match to protein family HMM PF03705 gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1644 YpsIP31758_1645 YpsIP31758_1645 cheB cheB 1915271 1916320 + chemotaxis response regulator protein-glutamate methylesterase identified by similarity to SP:P07330%3B match to protein family HMM PF00072%3B match to protein family HMM PF01339 gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1645 YpsIP31758_1646 YpsIP31758_1646 cheY cheY 1916421 1916810 + chemotaxis protein CheY identified by similarity to GB:AAA23570.1%3B match to protein family HMM PF00072 gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1646 YpsIP31758_1647 YpsIP31758_1647 cheZ cheZ 1916820 1917464 + chemotaxis protein CheZ identified by similarity to SP:P0A9H9%3B match to protein family HMM PF04344 gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1647 YpsIP31758_1648 YpsIP31758_1648 YpsIP31758_1648 1917778 1917897 - hypothetical protein identified by glimmer%3B putative gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1648 YpsIP31758_1649 YpsIP31758_1649 YpsIP31758_1649 1918028 1918792 + N-acetylmuramoyl-L-alanine amidase%2C family 2 identified by match to protein family HMM PF01510 gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1649 YpsIP31758_1650 YpsIP31758_1650 YpsIP31758_1650 1919149 1921791 + haemagglutinin repeat protein identified by match to protein family HMM PF03895%3B match to protein family HMM PF05658%3B match to protein family HMM PF05662%3B match to protein family HMM TIGR03304 gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1650 YpsIP31758_1651 YpsIP31758_1651 YpsIP31758_1651 1921891 1922844 + hypothetical protein identified by glimmer%3B putative gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1651 YpsIP31758_1652 YpsIP31758_1652 alr1 alr1 1923462 1924691 - alanine racemase identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492 gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1652 YpsIP31758_1653 YpsIP31758_1653 YpsIP31758_1653 1925083 1925196 - hypothetical protein identified by glimmer%3B putative gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1653 YpsIP31758_1654 YpsIP31758_1654 YpsIP31758_1654 1925836 1926084 + conserved hypothetical protein gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1654 YpsIP31758_1655 YpsIP31758_1655 YpsIP31758_1655 1927711 1927830 - hypothetical protein identified by glimmer%3B putative gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1655 YpsIP31758_1656 YpsIP31758_1656 YpsIP31758_1656 1926477 1927733 + phospholipase%2C patatin family identified by match to protein family HMM PF01734 gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1656 YpsIP31758_1657 YpsIP31758_1657 YpsIP31758_1657 1927888 1928121 + conserved hypothetical protein gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1657 YpsIP31758_1658 YpsIP31758_1658 YpsIP31758_1658 1928384 1928557 + hypothetical protein identified by glimmer%3B putative gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1658 YpsIP31758_1659 YpsIP31758_1659 YpsIP31758_1659 1928909 1929298 + conserved hypothetical protein identified by match to protein family HMM PF06171 gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1659 YpsIP31758_1660 YpsIP31758_1660 YpsIP31758_1660 1929408 1929647 - conserved hypothetical protein identified by match to protein family HMM PF07351 gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1660 YpsIP31758_1661 YpsIP31758_1661 YpsIP31758_1661 1929855 1930844 - spore coat U domain protein identified by match to protein family HMM PF05229 gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1661 YpsIP31758_1662 YpsIP31758_1662 YpsIP31758_1662 1930908 1931033 + hypothetical protein identified by glimmer%3B putative gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1662 YpsIP31758_1663 YpsIP31758_1663 YpsIP31758_1663 1931050 1933497 - fimbrial usher protein identified by match to protein family HMM PF00577 gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1663 YpsIP31758_1664 YpsIP31758_1664 YpsIP31758_1664 1933567 1934319 - pilus assembly chaperone identified by similarity to GB:AAP43038.1 gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1664 YpsIP31758_1665 YpsIP31758_1665 YpsIP31758_1665 1934350 1934934 - conserved hypothetical protein identified by match to protein family HMM PF05229 gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1665 YpsIP31758_1666 YpsIP31758_1666 YpsIP31758_1666 1934928 1935419 - hypothetical protein identified by glimmer%3B putative gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1666 YpsIP31758_1667 YpsIP31758_1667 YpsIP31758_1667 1935464 1936018 - conserved hypothetical protein identified by match to protein family HMM PF05229 gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1667 YpsIP31758_1668 YpsIP31758_1668 YpsIP31758_1668 1936499 1939150 - mce family protein identified by match to protein family HMM PF02470 gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1668 YpsIP31758_1669 YpsIP31758_1669 YpsIP31758_1669 1939119 1940366 - integral membrane protein%2C PqiA family identified by similarity to SP:P43670%3B match to protein family HMM PF04403%3B match to protein family HMM TIGR00155 gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1669 YpsIP31758_1670 YpsIP31758_1670 YpsIP31758_1670 1940598 1941095 + conserved hypothetical protein gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1670 YpsIP31758_1671 YpsIP31758_1671 proQ proQ 1941191 1941904 + ProP effector identified by similarity to SP:P45577%3B match to protein family HMM PF04352 gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1671 YpsIP31758_1672 YpsIP31758_1672 prc prc 1941924 1943996 + tail-specific protease identified by similarity to SP:P23865%3B match to protein family HMM PF00595%3B match to protein family HMM PF03572%3B match to protein family HMM TIGR00225 gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1672 YpsIP31758_1673 YpsIP31758_1673 YpsIP31758_1673 1944139 1944648 + IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1673 YpsIP31758_1674 YpsIP31758_1674 YpsIP31758_1674 1945180 1946061 + peptidase%2C M48 family identified by match to protein family HMM PF01435%3B match to protein family HMM PF06509 gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1674 YpsIP31758_1675 YpsIP31758_1675 YpsIP31758_1675 1946719 1947261 + fimbrial protein identified by match to protein family HMM PF00419 gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1675 YpsIP31758_1676 YpsIP31758_1676 YpsIP31758_1676 1947422 1948159 + fimbrial assembly chaperone protein identified by match to protein family HMM PF00345%3B match to protein family HMM PF02753 gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1676 YpsIP31758_1677 YpsIP31758_1677 YpsIP31758_1677 1948241 1950853 + fimbrial usher protein identified by match to protein family HMM PF00577 gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1677 YpsIP31758_1678 YpsIP31758_1678 YpsIP31758_1678 1950850 1952013 + fimbrial family protein identified by match to protein family HMM PF00419 gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1678 YpsIP31758_1679 YpsIP31758_1679 YpsIP31758_1679 1952010 1952813 + gram-negative pili assembly chaperone identified by match to protein family HMM PF00345%3B match to protein family HMM PF02753 gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1679 YpsIP31758_1680 YpsIP31758_1680 YpsIP31758_1680 1952867 1954234 - transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1680 YpsIP31758_1681 YpsIP31758_1681 YpsIP31758_1681 1954384 1954515 - hypothetical protein identified by glimmer%3B putative gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1681 YpsIP31758_1682 YpsIP31758_1682 ogl ogl 1954601 1955767 + oligogalacturonide lyase identified by similarity to SP:P21258 gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1682 YpsIP31758_1683 YpsIP31758_1683 YpsIP31758_1683 1955954 1956745 + transcriptional regulator%2C IclR family%2C C-terminal domain protein identified by match to protein family HMM PF01614 gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1683 YpsIP31758_1684 YpsIP31758_1684 YpsIP31758_1684 1957131 1957982 + N-acetylmuramoyl-L-alanine amidase%2C family 2 identified by match to protein family HMM PF01471%3B match to protein family HMM PF01510 gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1684 YpsIP31758_1685 YpsIP31758_1685 YpsIP31758_1685 1958197 1959588 - sodium:dicarboxylate symporter family protein identified by match to protein family HMM PF00375 gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1685 YpsIP31758_1686 YpsIP31758_1686 YpsIP31758_1686 1959792 1960340 - putative metal-dependent hydrolase%2C membrane-bound identified by match to protein family HMM PF04307 gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1686 YpsIP31758_1687 YpsIP31758_1687 kdgM2 kdgM2 1960838 1961548 - oligogalacturonate-specific porin protein KdgM identified by similarity to SP:Q934G3%3B match to protein family HMM PF06178%3B match to protein family HMM TIGR03304 gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1687 YpsIP31758_1688 YpsIP31758_1688 togB togB 1961846 1963138 - oligogalacturonide ABC transporter%2C periplasmic oligogalacturonide-binding protein identified by similarity to GB:CAC44121.1%3B match to protein family HMM PF01547 gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1688 YpsIP31758_1689 YpsIP31758_1689 togA togA 1963154 1964281 - oligogalacturonide ABC transporter%2C ATP-binding protein identified by similarity to GB:CAC44120.1%3B match to protein family HMM PF00005 gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1689 YpsIP31758_1690 YpsIP31758_1690 togN togN 1964295 1965215 - oligogalacturonide ABC tansporter%2C permease protein identified by similarity to GB:CAC44119.1%3B match to protein family HMM PF00528 gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1690 YpsIP31758_1691 YpsIP31758_1691 togM togM 1965208 1966098 - oligogalacturonide ABC tansporter%2C permease protein identified by similarity to GB:CAC44118.1%3B match to protein family HMM PF00528 gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1691 YpsIP31758_1692 YpsIP31758_1692 YpsIP31758_1692 1966139 1967806 - periplasmic pectate lyase identified by match to protein family HMM PF06917 gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1692 YpsIP31758_1693 YpsIP31758_1693 kduD1 kduD1 1968151 1968912 - 2-deoxy-D-gluconate 3-dehydrogenase identified by similarity to SP:P37769%3B match to protein family HMM PF00106%3B match to protein family HMM TIGR01832 gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1693 YpsIP31758_1694 YpsIP31758_1694 kduI kduI 1969004 1969840 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase identified by similarity to SP:Q46938%3B match to protein family HMM PF04962 gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1694 YpsIP31758_1695 YpsIP31758_1695 YpsIP31758_1695 1970505 1970621 - hypothetical protein identified by glimmer%3B putative gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1695 YpsIP31758_1696 YpsIP31758_1696 YpsIP31758_1696 1970176 1970508 + cupin domain protein identified by match to protein family HMM PF07883 gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1696 YpsIP31758_1697 YpsIP31758_1697 YpsIP31758_1697 1970790 1971455 - HAD hydrolase%2C IA family identified by similarity to SP:P77247%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1697 YpsIP31758_1698 YpsIP31758_1698 YpsIP31758_1698 1972404 1972520 - hypothetical protein identified by glimmer%3B putative gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1698 YpsIP31758_1699 YpsIP31758_1699 YpsIP31758_1699 1971866 1972420 + conserved hypothetical protein identified by similarity to GB:CAD02030.1 gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1699 YpsIP31758_1700 YpsIP31758_1700 YpsIP31758_1700 1972549 1973424 - fructosamine kinase family protein identified by match to protein family HMM PF01636%3B match to protein family HMM PF03881 gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1700 YpsIP31758_1701 YpsIP31758_1701 YpsIP31758_1701 1973449 1973661 - putative membrane protein gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1701 YpsIP31758_1702 YpsIP31758_1702 yfeD yfeD 1973729 1974622 - chelated iron ABC transporter%2C permease protein YfeD identified by similarity to SP:Q56955%3B match to protein family HMM PF00950%3B match to protein family HMM PF01032 gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1702 YpsIP31758_1703 YpsIP31758_1703 yfeC yfeC 1974619 1975503 - chelated iron ABC transporter%2C permease protein YfeC identified by similarity to SP:Q56954%3B match to protein family HMM PF00950%3B match to protein family HMM PF01032 gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1703 YpsIP31758_1704 YpsIP31758_1704 yfeB yfeB 1975503 1976393 - chelated iron ABC transporter%2C ATP-binding protein YfeB identified by similarity to SP:Q56953%3B match to protein family HMM PF00005 gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1704 YpsIP31758_1705 YpsIP31758_1705 yfeA yfeA 1976390 1977325 - chelated iron ABC transporter%2C periplasmic iron binding protein YfeA identified by similarity to SP:Q56952%3B match to protein family HMM PF01297 gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1705 YpsIP31758_1706 YpsIP31758_1706 YpsIP31758_1706 1977594 1978232 + transglycosylase slt family protein identified by similarity to SP:P0C066%3B match to protein family HMM PF01464 gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1706 YpsIP31758_1707 YpsIP31758_1707 YpsIP31758_1707 1978354 1979037 - membrane protein%2C MarC family identified by similarity to SP:P31123%3B match to protein family HMM PF01914%3B match to protein family HMM TIGR00427 gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1707 YpsIP31758_1708 YpsIP31758_1708 YpsIP31758_1708 1979275 1979607 + conserved hypothetical protein gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1708 YpsIP31758_1709 YpsIP31758_1709 YpsIP31758_1709 1979565 1979711 + hypothetical protein identified by glimmer%3B putative gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1709 YpsIP31758_1710 YpsIP31758_1710 YpsIP31758_1710 1980024 1980158 + hypothetical protein identified by glimmer%3B putative gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1710 YpsIP31758_1711 YpsIP31758_1711 YpsIP31758_1711 1980366 1980578 - conserved hypothetical protein identified by similarity to GB:CAH21581.1 gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1711 YpsIP31758_1712 YpsIP31758_1712 thrS thrS 1980969 1982897 + threonyl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF02824%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418 gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1712 YpsIP31758_1713 YpsIP31758_1713 infC infC 1982901 1983452 + translation initiation factor IF-3 Protein chain initiation factor IF3 has an unusual AUU start codon.%3B identified by match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168 gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1713 YpsIP31758_1714 YpsIP31758_1714 rpmI rpmI 1983549 1983746 + ribosomal protein L35 identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001 gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1714 YpsIP31758_1715 YpsIP31758_1715 rplT rplT 1983784 1984140 + ribosomal protein L20 identified by match to protein family HMM PF00453%3B match to protein family HMM TIGR01032 gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1715 YpsIP31758_1716 YpsIP31758_1716 pheS pheS 1984639 1985622 + phenylalanyl-tRNA synthetase%2C alpha subunit identified by similarity to SP:P08312%3B match to protein family HMM PF01409%3B match to protein family HMM PF02912%3B match to protein family HMM TIGR00468 gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1716 YpsIP31758_1717 YpsIP31758_1717 pheT pheT 1985636 1988023 + phenylalanyl-tRNA synthetase%2C beta subunit identified by match to protein family HMM PF01588%3B match to protein family HMM PF03147%3B match to protein family HMM PF03483%3B match to protein family HMM PF03484%3B match to protein family HMM TIGR00472 gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1717 YpsIP31758_1718 YpsIP31758_1718 ihfA ihfA 1988028 1988324 + integration host factor%2C alpha subunit identified by similarity to SP:P0A6X7%3B match to protein family HMM PF00216%3B match to protein family HMM TIGR00987 gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1718 YpsIP31758_1719 YpsIP31758_1719 YpsIP31758_1719 1988658 1989116 + conserved hypothetical protein gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1719 YpsIP31758_1720 YpsIP31758_1720 btuC btuC 1989343 1990350 + vitamin B12 import system permease protein BtuC identified by similarity to SP:P06609%3B match to protein family HMM PF01032 gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1720 YpsIP31758_1721 YpsIP31758_1721 btuE btuE 1990420 1990974 + vitamin B12 transport periplasmic protein BtuE identified by similarity to SP:P06610%3B match to protein family HMM PF00255 gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1721 YpsIP31758_1722 YpsIP31758_1722 btuD btuD 1990999 1991757 + vitamin B12 import ATP-binding protein BtuD identified by similarity to SP:P06611%3B match to protein family HMM PF00005 gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1722 YpsIP31758_1723 YpsIP31758_1723 arnB arnB 1992107 1993261 + UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase identified by similarity to SP:P77690%3B match to protein family HMM PF01041%3B match to protein family HMM PF01053%3B match to protein family HMM PF01212 gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1723 YpsIP31758_1724 YpsIP31758_1724 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase 1993248 1994942 + pseudogene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1724 YpsIP31758_1725 YpsIP31758_1725 YpsIP31758_1725 1994173 1994682 + IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1725 YpsIP31758_1727 YpsIP31758_1727 arnA arnA 1994939 1996942 + bifunctional polymyxin resistance ArnA protein identified by similarity to SP:P77398%3B match to protein family HMM PF00551%3B match to protein family HMM PF01370%3B match to protein family HMM PF02911 gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1727 YpsIP31758_1728 YpsIP31758_1728 YpsIP31758_1728 1996939 1997844 + Polysaccharide deacetylase identified by match to protein family HMM PF01522 gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1728 YpsIP31758_1729 YpsIP31758_1729 arnT arnT 1997841 1999505 + undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase identified by similarity to SP:P76473%3B match to protein family HMM PF02366 gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1729 YpsIP31758_1730 YpsIP31758_1730 YpsIP31758_1730 1999502 1999846 + multidrug resistance protein%2C SMR family identified by match to protein family HMM PF00893 gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1730 YpsIP31758_1731 YpsIP31758_1731 YpsIP31758_1731 1999843 2000229 + conserved hypothetical protein identified by similarity to GB:AAM85490.1 gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1731 YpsIP31758_1732 YpsIP31758_1732 YpsIP31758_1732 2000509 2000973 + lipoprotein%2C NlpC/P60 family identified by match to protein family HMM PF00877 gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1732 YpsIP31758_1733 YpsIP31758_1733 YpsIP31758_1733 2001098 2002114 + lipoyltransferase/lipoate-protein ligase identified by similarity to SP:P32099%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00545 gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1733 YpsIP31758_1734 YpsIP31758_1734 YpsIP31758_1734 2002178 2003629 + conserved hypothetical protein identified by similarity to SP:Q8FH30%3B match to protein family HMM PF02696 gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1734 YpsIP31758_1735 YpsIP31758_1735 aroH aroH 2003798 2004844 - phospho-2-dehydro-3-deoxyheptonate aldolase%2C Trp-sensitive identified by similarity to SP:P00887%3B match to protein family HMM PF00793%3B match to protein family HMM TIGR00034 gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1735 YpsIP31758_1736 YpsIP31758_1736 YpsIP31758_1736 2005001 2005822 - conserved hypothetical protein identified by similarity to GB:CAG74755.1%3B match to protein family HMM PF03618 gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1736 YpsIP31758_1737 YpsIP31758_1737 ppsA ppsA 2006178 2008562 + phosphoenolpyruvate synthase identified by similarity to SP:P23538%3B match to protein family HMM PF00391%3B match to protein family HMM PF01326%3B match to protein family HMM PF02896%3B match to protein family HMM TIGR01418 gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1737 YpsIP31758_1738 YpsIP31758_1738 YpsIP31758_1738 2009162 2010265 - putative membrane protein identified by match to protein family HMM PF01594 gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1738 YpsIP31758_1739 YpsIP31758_1739 YpsIP31758_1739 2010903 2013959 + oxidase%2C FAD binding identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913 gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1739 YpsIP31758_1740 YpsIP31758_1740 ydiI ydiI 2014113 2014529 + esterase YdiI identified by similarity to SP:P77781%3B match to protein family HMM PF03061%3B match to protein family HMM TIGR00369 gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1740 YpsIP31758_1741 YpsIP31758_1741 sufA sufA 2015145 2015516 + FeS assembly scaffold SufA identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049%3B match to protein family HMM TIGR01997 gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1741 YpsIP31758_1742 YpsIP31758_1742 sufB sufB 2015531 2017042 + FeS assembly protein SufB identified by match to protein family HMM PF01458%3B match to protein family HMM TIGR01980 gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1742 YpsIP31758_1743 YpsIP31758_1743 sufC sufC 2017227 2017973 + FeS assembly ATPase SufC identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01978 gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1743 YpsIP31758_1744 YpsIP31758_1744 sufD sufD 2017948 2019273 + FeS assembly protein SufD identified by match to protein family HMM PF01458%3B match to protein family HMM TIGR01981 gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1744 YpsIP31758_1745 YpsIP31758_1745 sufS sufS 2019270 2020490 + cysteine desulfurase identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR01979 gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1745 YpsIP31758_1746 YpsIP31758_1746 sufE sufE 2020579 2021001 + cysteine desulfuration protein SufE identified by similarity to SP:P76194%3B match to protein family HMM PF02657 gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1746 YpsIP31758_1747 YpsIP31758_1747 YpsIP31758_1747 2021272 2022336 + ErfK/YbiS/YcfS/YnhG family protein identified by match to protein family HMM PF03734 gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1747 YpsIP31758_1748 YpsIP31758_1748 lpp lpp 2022697 2022933 - major outer membrane lipoprotein identified by similarity to SP:P69776%3B match to protein family HMM PF04728 gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1748 YpsIP31758_1749 YpsIP31758_1749 pykF pykF 2023254 2024666 - pyruvate kinase I identified by similarity to SP:P0AD61%3B match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064 gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1749 YpsIP31758_1750 YpsIP31758_1750 mdtK mdtK 2025923 2027296 - multidrug resistance protein MdtK identified by similarity to SP:P37340%3B match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1750 YpsIP31758_1751 YpsIP31758_1751 ribE ribE 2027545 2028201 + riboflavin synthase%2C alpha subunit identified by match to protein family HMM PF00677%3B match to protein family HMM TIGR00187 gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1751 YpsIP31758_1752 YpsIP31758_1752 cfa cfa 2028252 2029403 - cyclopropane-fatty-acyl-phospholipid synthase identified by similarity to SP:P0A9H7%3B match to protein family HMM PF02353 gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1752 YpsIP31758_1753 YpsIP31758_1753 YpsIP31758_1753 2029883 2031085 - drug resistance transporter%2C Bcr/CflA family identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00710 gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1753 YpsIP31758_1754 YpsIP31758_1754 YpsIP31758_1754 2031376 2032308 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1754 YpsIP31758_1755 YpsIP31758_1755 YpsIP31758_1755 2032411 2033436 - purine nucleotide synthesis repressor identified by similarity to GB:AAN80512.1%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1755 YpsIP31758_1756 YpsIP31758_1756 sodB sodB 2033963 2034541 - superoxide dismutase (Fe) identified by similarity to SP:P09157%3B match to protein family HMM PF00081%3B match to protein family HMM PF02777 gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1756 YpsIP31758_1757 YpsIP31758_1757 YpsIP31758_1757 2034902 2035753 - lipoprotein%2C NlpC/P60 family identified by match to protein family HMM PF00877 gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1757 YpsIP31758_1758 YpsIP31758_1758 grxD grxD 2036193 2036543 + monothiol glutaredoxin GrxD identified by similarity to SP:P0AC69%3B match to protein family HMM PF00462%3B match to protein family HMM TIGR00365 gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1758 YpsIP31758_1759 YpsIP31758_1759 rnt rnt 2036854 2037501 - ribonuclease T identified by match to protein family HMM PF00929%3B match to protein family HMM TIGR01298 gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1759 YpsIP31758_1760 YpsIP31758_1760 gloA gloA 2037613 2038020 - lactoylglutathione lyase identified by similarity to SP:P0AC81%3B match to protein family HMM PF00903%3B match to protein family HMM TIGR00068 gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1760 YpsIP31758_1761 YpsIP31758_1761 YpsIP31758_1761 2038459 2038677 - conserved hypothetical protein identified by similarity to GB:ABA73878.1 gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1761 YpsIP31758_1762 YpsIP31758_1762 YpsIP31758_1762 2038865 2039962 - oxidoreductase%2C FAD/FMN-binding identified by match to protein family HMM PF00724 gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1762 YpsIP31758_1763 YpsIP31758_1763 YpsIP31758_1763 2040050 2040649 - transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1763 YpsIP31758_1764 YpsIP31758_1764 YpsIP31758_1764 2040892 2042529 - Alkaline phosphatase family protein identified by match to protein family HMM PF00884%3B match to protein family HMM PF08019 gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1764 YpsIP31758_1765 YpsIP31758_1765 YpsIP31758_1765 2042577 2042942 + conserved hypothetical protein identified by match to protein family HMM PF06945 gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1765 YpsIP31758_1766 YpsIP31758_1766 YpsIP31758_1766 2043074 2043970 + oxidoreductase%2C aldo/keto reductase family identified by similarity to SP:P76187%3B match to protein family HMM PF00248 gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1766 YpsIP31758_1767 YpsIP31758_1767 slyA slyA 2044768 2045199 + transcriptional regulator SlyA identified by similarity to SP:P40676%3B match to protein family HMM PF01047 gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1767 YpsIP31758_1768 YpsIP31758_1768 YpsIP31758_1768 2045367 2045876 - IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1768 YpsIP31758_1769 YpsIP31758_1769 pcp2 pcp2 2046053 2046520 - outer membrane lipoprotein Pcp identified by similarity to SP:P31484%3B match to protein family HMM PF05433 gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1769 YpsIP31758_1770 YpsIP31758_1770 anmK anmK 2047076 2048188 + anhydro-N-acetylmuramic acid kinase identified by similarity to SP:P77570%3B match to protein family HMM PF03702 gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1770 YpsIP31758_1771 YpsIP31758_1771 YpsIP31758_1771 2048243 2048560 + putative lipoprotein gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1771 YpsIP31758_1772 YpsIP31758_1772 pdxH pdxH 2048651 2049304 + pyridoxamine 5'-phosphate oxidase identified by match to protein family HMM PF01243%3B match to protein family HMM TIGR00558 gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1772 YpsIP31758_1773 YpsIP31758_1773 tyrS tyrS 2049486 2050760 + tyrosyl-tRNA synthetase identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234 gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1773 YpsIP31758_1774 YpsIP31758_1774 YpsIP31758_1774 2050915 2051775 + pyridoxal kinase identified by match to protein family HMM TIGR00687 gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1774 YpsIP31758_1775 YpsIP31758_1775 YpsIP31758_1775 2051835 2052440 - glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1775 YpsIP31758_1776 YpsIP31758_1776 YpsIP31758_1776 2052685 2052948 - conserved hypothetical protein identified by similarity to GB:CAH21518.1 gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1776 YpsIP31758_1777 YpsIP31758_1777 YpsIP31758_1777 2053194 2053784 - putative membrane protein identified by similarity to GB:CAH21517.1%3B match to protein family HMM PF06930 gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1777 YpsIP31758_1778 YpsIP31758_1778 YpsIP31758_1778 2054040 2055545 - proton dependent peptide transporter identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924 gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1778 YpsIP31758_1779 YpsIP31758_1779 YpsIP31758_1779 2056191 2057471 - conserved hypothetical protein identified by similarity to SP:P76035 gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1779 YpsIP31758_1780 YpsIP31758_1780 sapF sapF 2057861 2058676 - peptide ABC transporter%2C ATP-binding protein SapF identified by similarity to SP:P36638%3B match to protein family HMM PF00005 gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1780 YpsIP31758_1781 YpsIP31758_1781 sapD sapD 2058676 2059668 - peptide ABC transporter%2C ATP-binding protein SapD identified by similarity to SP:P36636%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1781 YpsIP31758_1782 YpsIP31758_1782 sapC sapC 2059668 2060558 - peptide ABC transporter%2C permease protein SapC identified by similarity to SP:P0AGH7%3B match to protein family HMM PF00528 gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1782 YpsIP31758_1783 YpsIP31758_1783 sapB sapB 2060545 2061510 - peptide ABC transporter%2C permease protein SapB identified by similarity to SP:P0AGH3%3B match to protein family HMM PF00528 gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1783 YpsIP31758_1784 YpsIP31758_1784 sapA sapA 2061507 2063150 - peptide ABC transporter%2C periplasmic peptide-binding protein identified by similarity to SP:Q47622%3B match to protein family HMM PF00496 gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1784 YpsIP31758_1785 YpsIP31758_1785 pspF pspF 2063730 2064758 - psp operon transcriptional activator identified by similarity to SP:P37344%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM TIGR02974 gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1785 YpsIP31758_1786 YpsIP31758_1786 pspA pspA 2065003 2065668 + phage shock protein A identified by similarity to SP:P0AFM6%3B match to protein family HMM PF04012%3B match to protein family HMM TIGR02977 gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1786 YpsIP31758_1787 YpsIP31758_1787 pspB pspB 2065830 2066057 + phage shock protein B identified by similarity to SP:P0AFM9%3B match to protein family HMM PF06667%3B match to protein family HMM TIGR02976 gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1787 YpsIP31758_1788 YpsIP31758_1788 pspC pspC 2066057 2066416 + phage shock protein C identified by similarity to SP:P0AFN2%3B match to protein family HMM PF04024%3B match to protein family HMM TIGR02978 gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1788 YpsIP31758_1789 YpsIP31758_1789 pspD pspD 2066501 2066743 + phage shock protein D identified by similarity to SP:P0AFV8%3B match to protein family HMM TIGR02979 gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1789 YpsIP31758_1790 YpsIP31758_1790 YpsIP31758_1790 2066724 2068121 + conserved hypothetical protein identified by match to protein family HMM PF04317 gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1790 YpsIP31758_1791 YpsIP31758_1791 YpsIP31758_1791 2068118 2069179 + conserved hypothetical protein TIGR01620 identified by match to protein family HMM PF05128%3B match to protein family HMM TIGR01620 gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1791 YpsIP31758_1792 YpsIP31758_1792 YpsIP31758_1792 2069189 2069647 - conserved hypothetical protein gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1792 YpsIP31758_1793 YpsIP31758_1793 YpsIP31758_1793 2069709 2070155 - conserved hypothetical protein TIGR02293 identified by match to protein family HMM TIGR02293 gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1793 YpsIP31758_1794 YpsIP31758_1794 tyrR tyrR 2070492 2072069 + transcriptional regulatory protein TyrR identified by similarity to SP:P07604%3B match to protein family HMM PF00158%3B match to protein family HMM PF01842 gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1794 YpsIP31758_1795 YpsIP31758_1795 tpx tpx 2072230 2072733 - thiol peroxidase identified by similarity to SP:P0A862%3B match to protein family HMM PF00578 gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1795 YpsIP31758_1796 YpsIP31758_1796 YpsIP31758_1796 2072896 2073870 + Mandelate racemase/muconate lactonizing enzyme family protein identified by match to protein family HMM PF02746 gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1796 YpsIP31758_1797 YpsIP31758_1797 YpsIP31758_1797 2073912 2074682 - conserved hypothetical protein identified by match to protein family HMM PF00246 gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1797 YpsIP31758_1798 YpsIP31758_1798 mppA mppA 2075059 2076675 + murein tripeptide ABC transporter%2C periplasmic murein peptide-binding protein identified by similarity to SP:P77348%3B match to protein family HMM PF00496 gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1798 YpsIP31758_1799 YpsIP31758_1799 zntB zntB 2076918 2077901 + zinc transport protein zntB identified by similarity to GB:AAG40855.1%3B match to protein family HMM PF01544 gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1799 YpsIP31758_1800 YpsIP31758_1800 YpsIP31758_1800 2078275 2079114 - transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1800 YpsIP31758_1801 YpsIP31758_1801 YpsIP31758_1801 2079426 2080430 - putative membrane protein gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1801 YpsIP31758_1802 YpsIP31758_1802 YpsIP31758_1802 2080701 2081642 - PP-loop family protein identified by match to protein family HMM PF01171 gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1802 YpsIP31758_1803 YpsIP31758_1803 YpsIP31758_1803 2081927 2085460 - pyruvate:ferredoxin (flavodoxin) oxidoreductase identified by match to protein family HMM PF00037%3B match to protein family HMM PF01558%3B match to protein family HMM PF01855%3B match to protein family HMM TIGR02176 gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1803 YpsIP31758_1804 YpsIP31758_1804 YpsIP31758_1804 2085939 2086271 + multidrug resistance protein%2C SMR family protein identified by match to protein family HMM PF00893 gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1804 YpsIP31758_1805 YpsIP31758_1805 YpsIP31758_1805 2086331 2086990 - mgtC family protein identified by match to protein family HMM PF02308 gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1805 YpsIP31758_1806 YpsIP31758_1806 YpsIP31758_1806 2087224 2087634 + putative lipoprotein identified by similarity to SP:P0ACW2 gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1806 YpsIP31758_1807 YpsIP31758_1807 hslJ hslJ 2087692 2088144 - heat shock protein HslJ identified by similarity to SP:P52644%3B match to protein family HMM PF03724 gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1807 YpsIP31758_1808 YpsIP31758_1808 ldhA ldhA 2088214 2089206 - fermentative lactate dehydrogenase identified by similarity to SP:P52643%3B match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1808 YpsIP31758_1809 YpsIP31758_1809 YpsIP31758_1809 2089472 2092204 + conserved hypothetical protein gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1809 YpsIP31758_1810 YpsIP31758_1810 YpsIP31758_1810 2092201 2092395 + putative lipoprotein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1810 YpsIP31758_1811 YpsIP31758_1811 YpsIP31758_1811 2092405 2092776 + conserved hypothetical protein identified by match to protein family HMM PF07027 gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1811 YpsIP31758_1812 YpsIP31758_1812 YpsIP31758_1812 2093031 2094422 - putative D-arabinitol 4-dehydrogenase identified by similarity to SP:O52720%3B match to protein family HMM PF01232%3B match to protein family HMM PF08125 gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1812 YpsIP31758_1813 YpsIP31758_1813 YpsIP31758_1813 2094632 2095588 + putative sugar-binding domain protein identified by match to protein family HMM PF04198 gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1813 YpsIP31758_1814 YpsIP31758_1814 azoR azoR 2095709 2096314 - FMN-dependent NADH-azoreductase identified by similarity to SP:P41407%3B match to protein family HMM PF02525%3B match to protein family HMM PF03358 gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1814 YpsIP31758_1815 YpsIP31758_1815 hrpA hrpA 2096737 2100624 + ATP-dependent helicase HrpA identified by similarity to SP:P43329%3B match to protein family HMM PF00271%3B match to protein family HMM PF04408%3B match to protein family HMM PF07717%3B match to protein family HMM TIGR01967 gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1815 YpsIP31758_1816 YpsIP31758_1816 YpsIP31758_1816 2100921 2101292 + conserved hypothetical protein identified by similarity to GB:CAE12500.1%3B match to protein family HMM PF05973 gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1816 YpsIP31758_1817 YpsIP31758_1817 YpsIP31758_1817 2101289 2101612 + DNA-binding protein identified by match to protein family HMM PF01381 gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1817 YpsIP31758_1818 YpsIP31758_1818 YpsIP31758_1818 2101668 2102504 - putative protease identified by match to protein family HMM PF00089 gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1818 YpsIP31758_1819 YpsIP31758_1819 asr asr 2102838 2103122 - acid shock protein identified by similarity to SP:P36560 gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1819 YpsIP31758_1820 YpsIP31758_1820 YpsIP31758_1820 2103726 2104280 + cytochrome b561 family protein identified by match to protein family HMM PF01292 gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1820 YpsIP31758_1821 YpsIP31758_1821 YpsIP31758_1821 2104306 2104884 + conserved hypothetical protein identified by similarity to SP:P0A8X2%3B match to protein family HMM PF04264 gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1821 YpsIP31758_1822 YpsIP31758_1822 YpsIP31758_1822 2105448 2105606 + conserved hypothetical protein identified by similarity to RF:ZP_01177031.1 gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1822 YpsIP31758_1823 YpsIP31758_1823 YpsIP31758_1823 2105710 2108694 - putative toxin protein identified by similarity to GB:AAO17204.1%3B match to protein family HMM PF03497%3B match to protein family HMM TIGR01643 gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1823 YpsIP31758_1824 YpsIP31758_1824 YpsIP31758_1824 2109533 2111032 - putative thermostable carboxypeptidase I identified by match to protein family HMM PF02074 gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1824 YpsIP31758_1825 YpsIP31758_1825 rstB rstB 2111126 2112430 - sensor protein RstB identified by similarity to SP:P18392%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1825 YpsIP31758_1826 YpsIP31758_1826 rstA rstA 2112430 2113176 - transcriptional regulatory protein RstA identified by similarity to SP:P52108%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1826 YpsIP31758_1827 YpsIP31758_1827 YpsIP31758_1827 2113473 2113889 + conserved hypothetical protein gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1827 YpsIP31758_1828 YpsIP31758_1828 YpsIP31758_1828 2113913 2115304 - putative arginine/ornithine antiporter ArcD identified by match to protein family HMM PF00324%3B match to protein family HMM TIGR00905 gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1828 YpsIP31758_1829 YpsIP31758_1829 YpsIP31758_1829 2115574 2116527 - conserved hypothetical protein identified by similarity to SP:P76177%3B match to protein family HMM PF07338 gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1829 YpsIP31758_1830 YpsIP31758_1830 pntA pntA 2117057 2118583 + NAD(P) transhydrogenase%2C alpha subunit identified by similarity to SP:P07001%3B match to protein family HMM PF01262%3B match to protein family HMM PF05222%3B match to protein family HMM TIGR00561 gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1830 YpsIP31758_1831 YpsIP31758_1831 pntB pntB 2118656 2120050 + NAD(P) transhydrogenase%2C beta subunit identified by similarity to SP:P0AB70%3B match to protein family HMM PF02233 gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1831 YpsIP31758_1832 YpsIP31758_1832 uspE uspE 2120141 2121097 - universal stress protein E identified by similarity to SP:P0AAC0%3B match to protein family HMM PF00582 gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1832 YpsIP31758_1833 YpsIP31758_1833 fnr fnr 2121232 2121984 - fumarate and nitrate reduction regulatory protein identified by similarity to SP:P0A9E5%3B match to protein family HMM PF00027%3B match to protein family HMM PF00325 gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1833 YpsIP31758_1834 YpsIP31758_1834 ogt ogt 2122057 2122575 - methylated-DNA--protein-cysteine methyltransferase identified by similarity to SP:P0AFH0%3B match to protein family HMM PF01035%3B match to protein family HMM PF02870%3B match to protein family HMM TIGR00589 gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1834 YpsIP31758_1835 YpsIP31758_1835 YpsIP31758_1835 2122833 2124278 + alkaline phosphatase identified by similarity to SP:P19147%3B match to protein family HMM PF00245 gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1835 YpsIP31758_1836 YpsIP31758_1836 YpsIP31758_1836 2124825 2127221 + conserved hypothetical protein identified by similarity to GB:CAH21457.1 gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1836 YpsIP31758_1837 YpsIP31758_1837 YpsIP31758_1837 2127367 2128041 + HAD hydrolase%2C IA family identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR02254 gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1837 YpsIP31758_1838 YpsIP31758_1838 YpsIP31758_1838 2128108 2128455 - putative acetolactate synthase I%2C small subunit identified by match to protein family HMM PF01842 gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1838 YpsIP31758_1839 YpsIP31758_1839 ilvB2 ilvB2 2128457 2130124 - acetolactate synthase%2C large subunit%2C biosynthetic type identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118 gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1839 YpsIP31758_1840 YpsIP31758_1840 ivbL ivbL 2130234 2130329 - ilvB operon leader peptide identified by match to protein family HMM PF08049 gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1840 YpsIP31758_1841 YpsIP31758_1841 YpsIP31758_1841 2130712 2131506 + putative lipoprotein identified by similarity to GB:AAS62289.1%3B match to protein family HMM PF07313 gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1841 YpsIP31758_1842 YpsIP31758_1842 YpsIP31758_1842 2131675 2134215 - conserved hypothetical protein identified by similarity to RF:YP_050310.1 gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1842 YpsIP31758_1843 YpsIP31758_1843 YpsIP31758_1843 2134212 2137283 - putative virulence factor SrfB identified by match to protein family HMM PF07520 gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1843 YpsIP31758_1844 YpsIP31758_1844 YpsIP31758_1844 2137288 2138766 - conserved hypothetical protein identified by similarity to RF:YP_050312.1 gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1844 YpsIP31758_1845 YpsIP31758_1845 YpsIP31758_1845 2138754 2138867 + hypothetical protein identified by glimmer%3B putative gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1845 YpsIP31758_1846 YpsIP31758_1846 amn amn 2138972 2140462 + AMP nucleosidase identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01717 gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1846 YpsIP31758_1847 YpsIP31758_1847 YpsIP31758_1847 2140887 2141705 - ABC Transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1847 YpsIP31758_1848 YpsIP31758_1848 YpsIP31758_1848 2141715 2142536 - ABC transporter %2C permease protein identified by match to protein family HMM PF00528 gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1848 YpsIP31758_1849 YpsIP31758_1849 YpsIP31758_1849 2142540 2143571 - ABC transporter%2C periplasmic substrate-binding protein gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1849 YpsIP31758_1850 YpsIP31758_1850 YpsIP31758_1850 2144326 2144979 + conserved hypothetical protein identified by similarity to GB:CAJ12540.1 gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1850 YpsIP31758_1851 YpsIP31758_1851 rbsA3 rbsA3 2144976 2146514 + ribose ABC transporter%2C ATP-binding protein identified by similarity to SP:P04983%3B match to protein family HMM PF00005 gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1851 YpsIP31758_1852 YpsIP31758_1852 rbsC3 rbsC3 2146541 2147602 + ribose ABC transporter%2C permease protein identified by similarity to SP:P04984%3B match to protein family HMM PF02653 gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1852 YpsIP31758_1853 YpsIP31758_1853 rbsB3 rbsB3 2147801 2148751 + ribose ABC transporter%2C periplasmic ribose-binding protein identified by similarity to SP:P02925%3B match to protein family HMM PF00532 gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1853 YpsIP31758_1854 YpsIP31758_1854 YpsIP31758_1854 2148895 2149365 + conserved hypothetical protein identified by similarity to GB:CAH21441.1 gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1854 YpsIP31758_1855 YpsIP31758_1855 YpsIP31758_1855 2149429 2150445 + sugar-binding transcriptional regulator%2C LacI family identified by similarity to SP:P03024%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1855 YpsIP31758_1856 YpsIP31758_1856 nhaC nhaC 2150590 2152044 + Na+/H+ antiporter NhaC identified by match to protein family HMM PF03553%3B match to protein family HMM TIGR00931 gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1856 YpsIP31758_1857 YpsIP31758_1857 YpsIP31758_1857 2152031 2153209 + aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1857 YpsIP31758_1858 YpsIP31758_1858 ypmA ypmA 2153920 2154375 + superantigen YpmA identified by similarity to GB:AAK28542.1%3B match to protein family HMM PF09144 gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1858 YpsIP31758_1859 YpsIP31758_1859 YpsIP31758_1859 2154709 2155632 - integral membrane protein identified by match to protein family HMM PF00892 gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1859 YpsIP31758_1860 YpsIP31758_1860 YpsIP31758_1860 2155876 2155989 + hypothetical protein identified by glimmer%3B putative gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1860 YpsIP31758_1861 YpsIP31758_1861 YpsIP31758_1861 2156140 2156649 + conserved hypothetical protein gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1861 YpsIP31758_1862 YpsIP31758_1862 YpsIP31758_1862 2156744 2158264 - aldehyde dehydrogenase (NAD) family protein identified by match to protein family HMM PF00171 gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1862 YpsIP31758_1863 YpsIP31758_1863 YpsIP31758_1863 2158560 2160377 + sigma-54 dependent transcriptional regulator identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954 gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1863 YpsIP31758_1864 YpsIP31758_1864 YpsIP31758_1864 2160491 2161240 + oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1864 YpsIP31758_1865 YpsIP31758_1865 YpsIP31758_1865 2161467 2161841 + conserved hypothetical protein identified by similarity to GB:CAH21432.1%3B match to protein family HMM PF06932 gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1865 YpsIP31758_1866 YpsIP31758_1866 YpsIP31758_1866 2162055 2162300 + putative lipoprotein identified by similarity to GB:CAH21431.1%3B match to protein family HMM PF06649 gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1866 YpsIP31758_1867 YpsIP31758_1867 YpsIP31758_1867 2162482 2163726 + chloride transporter%2C chloride channel (ClC) family identified by match to protein family HMM PF00654 gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1867 YpsIP31758_1868 YpsIP31758_1868 bioD1 bioD1 2163832 2164500 - dethiobiotin synthase identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR00347 gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1868 YpsIP31758_1869 YpsIP31758_1869 mlc mlc 2164724 2165941 - Mlc protein identified by similarity to SP:P50456%3B match to protein family HMM PF00480 gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1869 YpsIP31758_1870 YpsIP31758_1870 YpsIP31758_1870 2166120 2167034 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1870 YpsIP31758_1871 YpsIP31758_1871 YpsIP31758_1871 2167277 2168545 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1871 YpsIP31758_1872 YpsIP31758_1872 tus tus 2168751 2169686 + DNA replication terminus site-binding protein identified by similarity to SP:P16525%3B match to protein family HMM PF05472%3B match to protein family HMM TIGR02648 gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1872 YpsIP31758_1873 YpsIP31758_1873 fumC fumC 2169766 2171163 - fumarate hydratase%2C class II identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00979 gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1873 YpsIP31758_1874 YpsIP31758_1874 manA manA 2171447 2172622 + mannose-6-phosphate isomerase%2C class I identified by match to protein family HMM PF01238%3B match to protein family HMM TIGR00218 gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1874 YpsIP31758_1875 YpsIP31758_1875 YpsIP31758_1875 2172862 2174406 + conserved hypothetical protein identified by similarity to SP:P77804%3B match to protein family HMM PF06097 gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1875 YpsIP31758_1876 YpsIP31758_1876 YpsIP31758_1876 2174747 2175676 + conserved hypothetical protein identified by similarity to GB:CAH21420.1 gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1876 YpsIP31758_1877 YpsIP31758_1877 YpsIP31758_1877 2175849 2177105 - conserved hypothetical protein identified by similarity to GB:CAH21419.1 gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1877 YpsIP31758_1878 YpsIP31758_1878 add add 2177494 2178498 + adenosine deaminase identified by match to protein family HMM PF00962%3B match to protein family HMM TIGR01430 gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1878 YpsIP31758_1879 YpsIP31758_1879 YpsIP31758_1879 2178552 2178665 + hypothetical protein identified by glimmer%3B putative gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1879 YpsIP31758_1880 YpsIP31758_1880 YpsIP31758_1880 2178673 2179701 - putative sodium/bile acid symporter family protein gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1880 YpsIP31758_1881 YpsIP31758_1881 YpsIP31758_1881 2179895 2180944 - oxidoreductase%2C Gfo/Idh/MocA family protein identified by match to protein family HMM PF01118%3B match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1881 YpsIP31758_1882 YpsIP31758_1882 araC araC 2181072 2182004 - arabinose operon regulatory protein identified by similarity to SP:P0A9E0%3B match to protein family HMM PF00165%3B match to protein family HMM PF02311 gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1882 YpsIP31758_1883 YpsIP31758_1883 araH araH 2182239 2183288 - L-arabinose ABC transporter%2C permease protein identified by similarity to SP:P0AE26%3B match to protein family HMM PF02653 gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1883 YpsIP31758_1884 YpsIP31758_1884 araG araG 2183306 2184877 - L-arabinose ABC transporter%2C ATP-binding protein identified by similarity to SP:P0AAF3%3B match to protein family HMM PF00005 gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1884 YpsIP31758_1885 YpsIP31758_1885 araF araF 2184975 2185958 - L-arabinose ABC transporter%2C periplasmic L-arabinose-binding protein identified by similarity to SP:P02924%3B match to protein family HMM PF00532 gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1885 YpsIP31758_1886 YpsIP31758_1886 araB araB 2186365 2188068 + L-ribulokinase identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01234 gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1886 YpsIP31758_1887 YpsIP31758_1887 araA araA 2188152 2189654 + L-arabinose isomerase identified by match to protein family HMM PF02610 gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1887 YpsIP31758_1888 YpsIP31758_1888 YpsIP31758_1888 2189654 2189788 + hypothetical protein identified by glimmer%3B putative gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1888 YpsIP31758_1889 YpsIP31758_1889 YpsIP31758_1889 2189866 2192004 - type I secretion system ATPase identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR01846 gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1889 YpsIP31758_1890 YpsIP31758_1890 YpsIP31758_1890 2192006 2193376 - type I secretion membrane fusion protein%2C HlyD family protein identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01843 gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1890 YpsIP31758_1891 YpsIP31758_1891 YpsIP31758_1891 2193421 2195568 - toxin ABC transporter%2C ATP-binding/permease protein identified by similarity to GB:AAD21059.1%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR01846 gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1891 YpsIP31758_1892 YpsIP31758_1892 YpsIP31758_1892 2195786 2195938 + conserved hypothetical protein gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1892 YpsIP31758_1893 YpsIP31758_1893 YpsIP31758_1893 2196043 2196486 + conserved hypothetical protein identified by similarity to GB:CAH21406.1 gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1893 YpsIP31758_1894 YpsIP31758_1894 YpsIP31758_1894 2196614 2197195 + electron transport complex%2C RnfABCDGE type%2C A subunit identified by similarity to SP:P0A766%3B match to protein family HMM PF02508%3B match to protein family HMM TIGR01943 gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1894 YpsIP31758_1895 YpsIP31758_1895 YpsIP31758_1895 2197195 2197818 + electron transport complex%2C RnfABCDGE type%2C B subunit identified by similarity to SP:P77223%3B match to protein family HMM PF00037%3B match to protein family HMM PF04060%3B match to protein family HMM TIGR01944 gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1895 YpsIP31758_1896 YpsIP31758_1896 YpsIP31758_1896 2197811 2199907 + electron transport complex%2C RnfABCDGE type%2C C subunit identified by match to protein family HMM PF00037%3B match to protein family HMM PF01512%3B match to protein family HMM TIGR01945 gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1896 YpsIP31758_1897 YpsIP31758_1897 YpsIP31758_1897 2200012 2200905 - transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165 gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1897 YpsIP31758_1898 YpsIP31758_1898 YpsIP31758_1898 2201433 2202488 + electron transport complex%2C RnfABCDGE type%2C D subunit identified by match to protein family HMM PF03116%3B match to protein family HMM TIGR01946 gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1898 YpsIP31758_1899 YpsIP31758_1899 YpsIP31758_1899 2202498 2203127 + electron transport complex%2C RnfABCDGE type%2C G subunit identified by match to protein family HMM PF04205%3B match to protein family HMM TIGR01947 gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1899 YpsIP31758_1900 YpsIP31758_1900 YpsIP31758_1900 2203124 2203825 + electron transport complex%2C RnfABCDGE type%2C E subunit identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01948 gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1900 YpsIP31758_1901 YpsIP31758_1901 nth nth 2203822 2204463 + endonuclease III identified by similarity to SP:P0AB83%3B match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01083 gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1901 YpsIP31758_1902 YpsIP31758_1902 YpsIP31758_1902 2204646 2205644 - NAD dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1902 YpsIP31758_1903 YpsIP31758_1903 YpsIP31758_1903 2205682 2206992 - transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1903 YpsIP31758_1904 YpsIP31758_1904 rnb rnb 2207641 2209575 + exoribonuclease II identified by match to protein family HMM PF00575%3B match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00358%3B match to protein family HMM TIGR02062 gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1904 YpsIP31758_1905 YpsIP31758_1905 YpsIP31758_1905 2209925 2211991 + carbon starvation protein CstA identified by match to protein family HMM PF02554 gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1905 YpsIP31758_1906 YpsIP31758_1906 YpsIP31758_1906 2212286 2212399 - hypothetical protein identified by glimmer%3B putative gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1906 YpsIP31758_1907 YpsIP31758_1907 YpsIP31758_1907 2211984 2212289 + conserved hypothetical protein identified by similarity to GB:AAS62248.1%3B match to protein family HMM PF04328 gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1907 YpsIP31758_1908 YpsIP31758_1908 YpsIP31758_1908 2212406 2213071 - putative fructose-6-phosphate aldolase identified by similarity to SP:P78055%3B match to protein family HMM PF00923%3B match to protein family HMM TIGR00875 gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1908 YpsIP31758_1909 YpsIP31758_1909 YpsIP31758_1909 2213405 2213653 + conserved hypothetical protein identified by similarity to GB:CAH21391.1 gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1909 YpsIP31758_1910 YpsIP31758_1910 araD1 araD1 2213682 2214377 - L-ribulose-5-phosphate 4-epimerase identified by similarity to SP:P06190%3B match to protein family HMM PF00596%3B match to protein family HMM TIGR00760 gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1910 YpsIP31758_1911 YpsIP31758_1911 YpsIP31758_1911 2214857 2215072 + putative lipoprotein identified by similarity to GB:CAH21389.1 gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1911 YpsIP31758_1912 YpsIP31758_1912 YpsIP31758_1912 2215352 2215678 - yciH protein identified by similarity to SP:P08245%3B match to protein family HMM PF01253%3B match to protein family HMM TIGR01158 gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1912 YpsIP31758_1913 YpsIP31758_1913 pyrF pyrF 2215678 2216415 - orotidine 5'-phosphate decarboxylase identified by match to protein family HMM PF00215%3B match to protein family HMM TIGR01740 gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1913 YpsIP31758_1914 YpsIP31758_1914 YpsIP31758_1914 2216885 2217184 + conserved hypothetical protein identified by similarity to GB:CAH21386.1 gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1914 YpsIP31758_1915 YpsIP31758_1915 YpsIP31758_1915 2217306 2218475 - tetratricopeptide repeat protein identified by match to protein family HMM PF07719 gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1915 YpsIP31758_1916 YpsIP31758_1916 YpsIP31758_1916 2218482 2218793 - putative membrane protein identified by match to protein family HMM PF06305 gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1916 YpsIP31758_1917 YpsIP31758_1917 YpsIP31758_1917 2218974 2219735 - PAP2 family protein identified by match to protein family HMM PF01569 gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1917 YpsIP31758_1918 YpsIP31758_1918 YpsIP31758_1918 2219866 2220021 - hypothetical protein identified by glimmer%3B putative gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1918 YpsIP31758_1919 YpsIP31758_1919 ribA ribA 2220241 2220831 + GTP cyclohydrolase II identified by match to protein family HMM PF00925%3B match to protein family HMM TIGR00505 gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1919 YpsIP31758_1920 YpsIP31758_1920 acnA acnA 2220995 2223667 - aconitate hydratase 1 identified by match to protein family HMM PF00330%3B match to protein family HMM PF00694%3B match to protein family HMM TIGR01341 gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1920 YpsIP31758_1921 YpsIP31758_1921 YpsIP31758_1921 2224031 2224882 - hypothetical protein identified by glimmer%3B putative gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1921 YpsIP31758_1922 YpsIP31758_1922 cysB cysB 2225219 2226193 - cys regulon transcriptional activator identified by similarity to SP:P45600%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1922 YpsIP31758_1923 YpsIP31758_1923 topA topA 2226590 2229205 - DNA topoisomerase I identified by similarity to SP:P06612%3B match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051 gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1923 YpsIP31758_1924 YpsIP31758_1924 YpsIP31758_1924 2229624 2229875 + conserved hypothetical protein identified by similarity to SP:P0AB64 gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1924 YpsIP31758_1925 YpsIP31758_1925 YpsIP31758_1925 2229994 2231040 - peptidase%2C S49 family identified by match to protein family HMM PF01343 gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1925 YpsIP31758_1926 YpsIP31758_1926 YpsIP31758_1926 2231212 2231973 + oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106 gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1926 YpsIP31758_1927 YpsIP31758_1927 cobO cobO 2231990 2232580 + cob(I)alamin adenosyltransferase identified by match to protein family HMM PF02572%3B match to protein family HMM TIGR00708 gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1927 YpsIP31758_1928 YpsIP31758_1928 rluB rluB 2232703 2233659 - ribosomal large subunit pseudouridine synthase B identified by similarity to SP:P37765%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1928 YpsIP31758_1929 YpsIP31758_1929 YpsIP31758_1929 2234067 2234687 - Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300%3B match to protein family HMM TIGR00057 gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1929 YpsIP31758_1930 YpsIP31758_1930 YpsIP31758_1930 2234704 2235603 - PHP domain protein identified by match to protein family HMM PF02811 gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1930 YpsIP31758_1931 YpsIP31758_1931 trpL trpL 2235874 2235936 + trp operon leader peptide identified by similarity to RF:NP_993346.1 gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1931 YpsIP31758_1932 YpsIP31758_1932 trpE trpE 2236052 2237617 + anthranilate synthase component I identified by match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00565 gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1932 YpsIP31758_1933 YpsIP31758_1933 trpG trpG 2237617 2238195 + anthranilate synthase component II identified by similarity to SP:P00900%3B similarity to GB:AAK37409.1%3B match to protein family HMM PF00117%3B match to protein family HMM TIGR00566 gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1933 YpsIP31758_1934 YpsIP31758_1934 trpD trpD 2238207 2239208 + anthranilate phosphoribosyltransferase identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM TIGR01245 gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1934 YpsIP31758_1935 YpsIP31758_1935 trpC trpC 2239212 2240639 + tryptophan biosynthesis protein trpCF identified by similarity to SP:P00909%3B match to protein family HMM PF00218%3B match to protein family HMM PF00697 gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1935 YpsIP31758_1936 YpsIP31758_1936 trpB trpB 2240774 2241964 + tryptophan synthase%2C beta subunit identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00263 gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1936 YpsIP31758_1937 YpsIP31758_1937 trpA trpA 2241964 2242770 + tryptophan synthase%2C alpha subunit identified by match to protein family HMM PF00290%3B match to protein family HMM TIGR00262 gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1937 YpsIP31758_1938 YpsIP31758_1938 YpsIP31758_1938 2242784 2242933 + putative membrane protein gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1938 YpsIP31758_1939 YpsIP31758_1939 YpsIP31758_1939 2243113 2243427 + Putative phospholipid-binding domain protein identified by match to protein family HMM PF04972 gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1939 YpsIP31758_1940 YpsIP31758_1940 YpsIP31758_1940 2243574 2244209 - outer membrane protein%2C OmpW family identified by match to protein family HMM PF03922%3B match to protein family HMM TIGR03304 gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1940 YpsIP31758_1941 YpsIP31758_1941 YpsIP31758_1941 2244318 2244533 - conserved hypothetical protein gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1941 YpsIP31758_1942 YpsIP31758_1942 YpsIP31758_1942 2244695 2245465 + putative membrane protein identified by match to protein family HMM PF06790 gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1942 YpsIP31758_1943 YpsIP31758_1943 YpsIP31758_1943 2245586 2247325 - sulfate permease family protein identified by match to protein family HMM PF00916%3B match to protein family HMM PF01740 gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1943 YpsIP31758_1944 YpsIP31758_1944 ispZ ispZ 2247556 2248098 + intracellular septation protein A identified by similarity to SP:P95745%3B match to protein family HMM PF04279%3B match to protein family HMM TIGR00997 gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1944 YpsIP31758_1945 YpsIP31758_1945 YpsIP31758_1945 2248178 2248627 + thioesterase family protein identified by match to protein family HMM PF03061 gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1945 YpsIP31758_1946 YpsIP31758_1946 tonB tonB 2248696 2249466 - TonB protein identified by similarity to SP:P02929%3B match to protein family HMM PF03544%3B match to protein family HMM TIGR01352 gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1946 YpsIP31758_1947 YpsIP31758_1947 YpsIP31758_1947 2249767 2250063 + YciI domain protein identified by match to protein family HMM PF03795 gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1947 YpsIP31758_1948 YpsIP31758_1948 YpsIP31758_1948 2250301 2250546 + conserved hypothetical protein identified by similarity to GB:AAS62207.1 gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1948 YpsIP31758_1949 YpsIP31758_1949 YpsIP31758_1949 2250662 2250925 - conserved hypothetical protein gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1949 YpsIP31758_1950 YpsIP31758_1950 YpsIP31758_1950 2251042 2251170 - putative membrane protein gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1950 YpsIP31758_1951 YpsIP31758_1951 YpsIP31758_1951 2251145 2251684 - Ail/Lom family protein identified by similarity to SP:P16454%3B match to protein family HMM PF06316%3B match to protein family HMM TIGR03304 gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1951 YpsIP31758_1952 YpsIP31758_1952 YpsIP31758_1952 2252113 2252253 - conserved hypothetical protein gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1952 YpsIP31758_1953 YpsIP31758_1953 cls cls 2252731 2254191 + cardiolipin synthetase identified by similarity to SP:P0A6H8%3B match to protein family HMM PF00614 gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1953 YpsIP31758_1954 YpsIP31758_1954 YpsIP31758_1954 2254356 2254679 + conserved hypothetical protein identified by match to protein family HMM PF04269 gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1954 YpsIP31758_1955 YpsIP31758_1955 YpsIP31758_1955 2254978 2255193 - conserved hypothetical protein identified by similarity to GB:AAS62201.1 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1955 YpsIP31758_1956 YpsIP31758_1956 oppF oppF 2255764 2256765 - oligopeptide ABC transporter%2C ATP-binding protein OppF identified by similarity to SP:P77737%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1956 YpsIP31758_1957 YpsIP31758_1957 oppD oppD 2256762 2257763 - oligopeptide ABC transporter%2C ATP-binding protein OppD identified by similarity to SP:P76027%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1957 YpsIP31758_1958 YpsIP31758_1958 oppC oppC 2257775 2258680 - oligopeptide ABC transporter%2C permease protein OppC identified by similarity to SP:P08006%3B match to protein family HMM PF00528 gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1958 YpsIP31758_1959 YpsIP31758_1959 oppB oppB 2258699 2259619 - oligopeptide ABC transporter%2C permease protein OppB identified by similarity to SP:P08005%3B match to protein family HMM PF00528 gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1959 YpsIP31758_1960 YpsIP31758_1960 oppA oppA 2259706 2261343 - oligopeptide ABC transporter%2C periplasmic oligopeptide-binding protein identified by similarity to SP:P23843%3B match to protein family HMM PF00496 gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1960 YpsIP31758_1961 YpsIP31758_1961 YpsIP31758_1961 2261315 2261494 + hypothetical protein identified by glimmer%3B putative gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1961 YpsIP31758_1962 YpsIP31758_1962 YpsIP31758_1962 2262181 2262825 - putative membrane protein identified by similarity to SP:P25743%3B match to protein family HMM PF01914%3B match to protein family HMM TIGR00427 gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1962 YpsIP31758_1963 YpsIP31758_1963 adhE adhE 2263660 2266335 + aldehyde-alcohol dehydrogenase identified by similarity to SP:P33744%3B match to protein family HMM PF00171%3B match to protein family HMM PF00465 gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1963 YpsIP31758_1964 YpsIP31758_1964 tdk tdk 2267086 2267676 - thymidine kinase identified by match to protein family HMM PF00265 gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1964 YpsIP31758_1965 YpsIP31758_1965 YpsIP31758_1965 2268033 2268170 + hypothetical protein identified by glimmer%3B putative gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1965 YpsIP31758_1966 YpsIP31758_1966 hns hns 2268426 2268833 + DNA-binding protein H-NS identified by similarity to SP:P18955%3B match to protein family HMM PF00816 gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1966 YpsIP31758_1967 YpsIP31758_1967 YpsIP31758_1967 2268988 2269497 + IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1967 YpsIP31758_1968 YpsIP31758_1968 YpsIP31758_1968 2269978 2271324 - UDP-glucose/GDP-mannose dehydrogenase family protein identified by match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1968 YpsIP31758_1969 YpsIP31758_1969 YpsIP31758_1969 2271631 2272647 - response regulator identified by match to protein family HMM PF00072 gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1969 YpsIP31758_1970 YpsIP31758_1970 YpsIP31758_1970 2273981 2274445 + SEC-C motif identified by match to protein family HMM PF02810 gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1970 YpsIP31758_1971 YpsIP31758_1971 purU purU 2274529 2275377 + formyltetrahydrofolate deformylase identified by similarity to SP:P37051%3B match to protein family HMM PF00551%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00655 gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1971 YpsIP31758_1974 YpsIP31758_1974 YpsIP31758_1974 2275921 2276781 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126 gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1974 YpsIP31758_1975 YpsIP31758_1975 YpsIP31758_1975 2277153 2277281 - hypothetical protein identified by glimmer%3B putative gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1975 YpsIP31758_1976 YpsIP31758_1976 xth xth 2277591 2278397 + exodeoxyribonuclease III identified by similarity to SP:P09030%3B match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633 gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1976 YpsIP31758_1977 YpsIP31758_1977 nudG nudG 2278495 2278881 + CTP pyrophosphohydrolase identified by similarity to SP:P77788%3B match to protein family HMM PF00293 gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1977 YpsIP31758_1978 YpsIP31758_1978 YpsIP31758_1978 2278894 2279184 - conserved hypothetical protein identified by match to protein family HMM PF07383 gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1978 YpsIP31758_1979 YpsIP31758_1979 topB topB 2279181 2281106 - DNA topoisomerase 3 identified by similarity to SP:P14294%3B match to protein family HMM PF01131%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01056 gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1979 YpsIP31758_1980 YpsIP31758_1980 selD selD 2281168 2282214 - selenide%2C water dikinase identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00476 gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1980 YpsIP31758_1981 YpsIP31758_1981 YpsIP31758_1981 2282439 2282990 - nitroreductase family protein identified by match to protein family HMM PF00881 gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1981 YpsIP31758_1982 YpsIP31758_1982 sppA sppA 2283153 2285003 + signal peptide peptidase SppA%2C 67K type identified by similarity to SP:P08395%3B match to protein family HMM PF01343%3B match to protein family HMM TIGR00705%3B match to protein family HMM TIGR00706 gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1982 YpsIP31758_1983 YpsIP31758_1983 ansA ansA 2285120 2286136 + L-asparaginase I identified by similarity to SP:P0A962%3B match to protein family HMM PF00710%3B match to protein family HMM TIGR00519 gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1983 YpsIP31758_1984 YpsIP31758_1984 pncA pncA 2286151 2286798 + pyrazinamidase/nicotinamidase identified by similarity to SP:P21369%3B match to protein family HMM PF00857 gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1984 YpsIP31758_1985 YpsIP31758_1985 YpsIP31758_1985 2286932 2287204 - conserved hypothetical protein identified by similarity to GB:AAS62176.1%3B match to protein family HMM PF07023 gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1985 YpsIP31758_1986 YpsIP31758_1986 msrB msrB 2287275 2287688 - methionine-R-sulfoxide reductase identified by match to protein family HMM PF01641%3B match to protein family HMM TIGR00357 gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1986 YpsIP31758_1987 YpsIP31758_1987 gapA gapA 2288036 2289031 + glyceraldehyde-3-phosphate dehydrogenase%2C type I identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534 gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1987 YpsIP31758_1988 YpsIP31758_1988 YpsIP31758_1988 2289204 2289341 - hypothetical protein identified by glimmer%3B putative gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1988 YpsIP31758_1989 YpsIP31758_1989 YpsIP31758_1989 2289346 2290221 + aldose 1-epimerase identified by match to protein family HMM PF01263 gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1989 YpsIP31758_1990 YpsIP31758_1990 mipA mipA 2290294 2291064 - MltA-interacting protein identified by similarity to SP:P0A908%3B match to protein family HMM PF06629 gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1990 YpsIP31758_1991 YpsIP31758_1991 YpsIP31758_1991 2291487 2293421 + PrkA serine protein kinase identified by match to protein family HMM PF06798 gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1991 YpsIP31758_1992 YpsIP31758_1992 YpsIP31758_1992 2293571 2294845 + conserved hypothetical protein identified by similarity to GB:AAS62170.1%3B match to protein family HMM PF04285 gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1992 YpsIP31758_1993 YpsIP31758_1993 YpsIP31758_1993 2294953 2296071 + integral membrane protein identified by match to protein family HMM PF00892 gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1993 YpsIP31758_1994 YpsIP31758_1994 YpsIP31758_1994 2296106 2297011 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1994 YpsIP31758_1995 YpsIP31758_1995 YpsIP31758_1995 2297209 2298078 + pirin family protein identified by match to protein family HMM PF02678%3B match to protein family HMM PF05726 gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1995 YpsIP31758_1996 YpsIP31758_1996 YpsIP31758_1996 2298343 2299536 + drug resistance transporter%2C Bcr/CflA family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00710 gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1996 YpsIP31758_1997 YpsIP31758_1997 dadA dadA 2299565 2300869 - D-amino acid dehydrogenase%2C small subunit identified by similarity to SP:P0A6J5%3B match to protein family HMM PF01266 gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1997 YpsIP31758_1998 YpsIP31758_1998 YpsIP31758_1998 2301335 2302870 + SpoVR family protein identified by match to protein family HMM PF04293 gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1998 YpsIP31758_1999 YpsIP31758_1999 fadR fadR 2303088 2303807 - fatty acid metabolism transcriptional regulator FadR identified by match to protein family HMM PF00392%3B match to protein family HMM PF07840%3B match to protein family HMM TIGR02812 gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_1999 YpsIP31758_2000 YpsIP31758_2000 nhaB nhaB 2304051 2305625 + Na+/H+ antiporter NhaB identified by similarity to SP:P27377%3B match to protein family HMM PF06450%3B match to protein family HMM TIGR00774 gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2000 YpsIP31758_2001 YpsIP31758_2001 dsbB dsbB 2305846 2306391 + disulfide bond formation protein DsbB identified by similarity to SP:P0A6M2%3B match to protein family HMM PF02600 gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2001 YpsIP31758_2002 YpsIP31758_2002 YpsIP31758_2002 2306808 2307164 - conserved hypothetical protein identified by similarity to GB:CAH21307.1 gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2002 YpsIP31758_2003 YpsIP31758_2003 YpsIP31758_2003 2308256 2308996 + conserved hypothetical protein identified by similarity to RF:NP_928250.1 gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2003 YpsIP31758_2004 YpsIP31758_2004 YpsIP31758_2004 2309013 2310212 + aminotransferase%2C class V identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212 gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2004 YpsIP31758_2005 YpsIP31758_2005 YpsIP31758_2005 2310216 2311388 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2005 YpsIP31758_2006 YpsIP31758_2006 YpsIP31758_2006 2311473 2311919 - conserved hypothetical protein identified by similarity to SP:Q8FI28%3B match to protein family HMM PF05779 gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2006 YpsIP31758_2007 YpsIP31758_2007 YpsIP31758_2007 2312022 2312678 - fumarylacetoacetate hydrolase family protein identified by match to protein family HMM PF01557 gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2007 YpsIP31758_2008 YpsIP31758_2008 YpsIP31758_2008 2312749 2313837 - lytic murein transglycosylase identified by match to protein family HMM TIGR02283 gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2008 YpsIP31758_2009 YpsIP31758_2009 YpsIP31758_2009 2313975 2314247 - conserved hypothetical protein identified by similarity to GB:AAW86198.1%3B match to protein family HMM PF05166 gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2009 YpsIP31758_2010 YpsIP31758_2010 minC minC 2314968 2315654 + septum site-determining protein MinC identified by similarity to SP:P18196%3B match to protein family HMM PF03775%3B match to protein family HMM PF05209%3B match to protein family HMM TIGR01222 gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2010 YpsIP31758_2011 YpsIP31758_2011 minD minD 2315679 2316491 + septum site-determining protein MinD identified by similarity to SP:P18197%3B match to protein family HMM PF01656%3B match to protein family HMM TIGR01968 gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2011 YpsIP31758_2012 YpsIP31758_2012 minE minE 2316495 2316764 + cell division topological specificity factor MinE identified by similarity to SP:P0A734%3B match to protein family HMM PF03776%3B match to protein family HMM TIGR01215 gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2012 YpsIP31758_2013 YpsIP31758_2013 rnd rnd 2317001 2318122 - ribonuclease D identified by match to protein family HMM PF00570%3B match to protein family HMM PF01612%3B match to protein family HMM TIGR01388 gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2013 YpsIP31758_2014 YpsIP31758_2014 fadD fadD 2318282 2319970 - long-chain-fatty-acid--CoA ligase identified by similarity to SP:P69451%3B match to protein family HMM PF00501 gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2014 YpsIP31758_2015 YpsIP31758_2015 YpsIP31758_2015 2320613 2321200 - outer membrane lipoprotein%2C Slp family identified by match to protein family HMM PF03843%3B match to protein family HMM TIGR00752 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2015 YpsIP31758_2016 YpsIP31758_2016 YpsIP31758_2016 2321355 2322053 - peptidase family M22%2C nonpeptidase-like protein identified by match to protein family HMM PF00814 gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2016 YpsIP31758_2017 YpsIP31758_2017 YpsIP31758_2017 2322125 2324029 - conserved hypothetical protein identified by similarity to RF:YP_050470.1 gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2017 YpsIP31758_2018 YpsIP31758_2018 YpsIP31758_2018 2324160 2324504 + Endoribonuclease L-PSP identified by match to protein family HMM PF01042 gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2018 YpsIP31758_2019 YpsIP31758_2019 mdtI mdtI 2324636 2324965 - multidrug resistance protein MdtI identified by similarity to SP:P69210%3B match to protein family HMM PF00893 gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2019 YpsIP31758_2020 YpsIP31758_2020 mdtJ mdtJ 2324952 2325395 - multidrug resistance protein MdtJ identified by similarity to SP:P69212%3B match to protein family HMM PF00893 gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2020 YpsIP31758_2021 YpsIP31758_2021 eda eda 2326083 2326724 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase identified by match to protein family HMM PF01081%3B match to protein family HMM TIGR01182 gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2021 YpsIP31758_2022 YpsIP31758_2022 zwf zwf 2326966 2328450 - glucose-6-phosphate 1-dehydrogenase identified by match to protein family HMM PF00479%3B match to protein family HMM PF02781%3B match to protein family HMM TIGR00871 gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2022 YpsIP31758_2023 YpsIP31758_2023 YpsIP31758_2023 2328803 2329672 + putative transcriptional regulator HexR identified by similarity to SP:P46118%3B match to protein family HMM PF01380%3B match to protein family HMM PF01418 gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2023 YpsIP31758_2024 YpsIP31758_2024 pykA pykA 2330002 2331444 + pyruvate kinase II identified by similarity to SP:P21599%3B match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064 gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2024 YpsIP31758_2025 YpsIP31758_2025 msbB msbB 2331784 2332746 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase identified by match to protein family HMM PF03279%3B match to protein family HMM TIGR02208 gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2025 YpsIP31758_2026 YpsIP31758_2026 YpsIP31758_2026 2333013 2334329 - peptidase%2C M23 family identified by match to protein family HMM PF01476%3B match to protein family HMM PF01551%3B match to protein family HMM PF04225 gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2026 YpsIP31758_2027 YpsIP31758_2027 znuA znuA 2334350 2335306 - high-affinity zinc uptake ABC transporter%2C periplasmic zinc-binding protein identified by similarity to SP:P39172%3B match to protein family HMM PF01297 gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2027 YpsIP31758_2028 YpsIP31758_2028 znuC znuC 2335379 2336140 + high-affinity zinc uptake ABC transporter%2C ATP-binding protein identified by similarity to SP:P0A9X1%3B match to protein family HMM PF00005 gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2028 YpsIP31758_2029 YpsIP31758_2029 znuB znuB 2336137 2336922 + high-affinity zinc uptake ABC transporter%2C permease protein identified by similarity to SP:P39832%3B match to protein family HMM PF00950%3B match to protein family HMM PF01032 gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2029 YpsIP31758_2030 YpsIP31758_2030 ruvB ruvB 2336978 2337982 - Holliday junction DNA helicase RuvB identified by match to protein family HMM PF00004%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00635 gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2030 YpsIP31758_2031 YpsIP31758_2031 ruvA ruvA 2338145 2338759 - Holliday junction DNA helicase RuvA identified by match to protein family HMM PF00633%3B match to protein family HMM PF01330%3B match to protein family HMM PF07499%3B match to protein family HMM TIGR00084 gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2031 YpsIP31758_2032 YpsIP31758_2032 ruvC ruvC 2339066 2339587 - crossover junction endodeoxyribonuclease RuvC identified by match to protein family HMM PF02075%3B match to protein family HMM TIGR00228 gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2032 YpsIP31758_2033 YpsIP31758_2033 YpsIP31758_2033 2339796 2340539 - conserved hypothetical protein TIGR01033 identified by similarity to GB:AAS62116.1%3B match to protein family HMM PF01709%3B match to protein family HMM TIGR01033 gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2033 YpsIP31758_2034 YpsIP31758_2034 YpsIP31758_2034 2340597 2341040 - putative dATP pyrophosphohydrolase identified by similarity to SP:P24236%3B match to protein family HMM PF00293 gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2034 YpsIP31758_2035 YpsIP31758_2035 aspS aspS 2341040 2342836 - aspartyl-tRNA synthetase identified by match to protein family HMM PF00152%3B match to protein family HMM PF00587%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459 gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2035 YpsIP31758_2036 YpsIP31758_2036 YpsIP31758_2036 2343805 2344620 + conserved hypothetical protein identified by match to protein family HMM PF01904 gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2036 YpsIP31758_2037 YpsIP31758_2037 YpsIP31758_2037 2344800 2345195 + conserved hypothetical protein gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2037 YpsIP31758_2038 YpsIP31758_2038 YpsIP31758_2038 2345386 2346189 + putative methyltransferase identified by similarity to SP:P76290%3B match to protein family HMM TIGR00740 gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2038 YpsIP31758_2039 YpsIP31758_2039 YpsIP31758_2039 2346186 2347157 + putative methyltransferase identified by similarity to SP:P76291%3B match to protein family HMM PF08003%3B match to protein family HMM TIGR00452 gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2039 YpsIP31758_2040 YpsIP31758_2040 cutC cutC 2347350 2348114 - copper homeostasis protein CutC identified by similarity to SP:P67826%3B match to protein family HMM PF03932 gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2040 YpsIP31758_2041 YpsIP31758_2041 YpsIP31758_2041 2348346 2348921 - conserved hypothetical protein identified by similarity to SP:P52007%3B match to protein family HMM PF06185 gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2041 YpsIP31758_2042 YpsIP31758_2042 YpsIP31758_2042 2348942 2349070 - hypothetical protein identified by glimmer%3B putative gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2042 YpsIP31758_2043 YpsIP31758_2043 argS argS 2349486 2351216 + arginyl-tRNA synthetase identified by similarity to SP:P11875%3B match to protein family HMM PF00750%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456 gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2043 YpsIP31758_2044 YpsIP31758_2044 YpsIP31758_2044 2351366 2356213 - adhesin/haemagluttinin repeat protein identified by match to protein family HMM PF05594%3B match to protein family HMM PF05860%3B match to protein family HMM TIGR01901 gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2044 YpsIP31758_2045 YpsIP31758_2045 YpsIP31758_2045 2356255 2357796 - haemolysin secretion/activation protein%2C ShlB/FhaC/HecB family identified by match to protein family HMM PF03865 gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2045 YpsIP31758_2046 YpsIP31758_2046 mviN mviN 2358289 2359824 - integral membrane protein MviN identified by match to protein family HMM PF03023%3B match to protein family HMM TIGR01695 gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2046 YpsIP31758_2047 YpsIP31758_2047 YpsIP31758_2047 2360091 2361020 - putative oxidoreductase identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2047 YpsIP31758_2048 YpsIP31758_2048 YpsIP31758_2048 2361013 2361714 - conserved hypothetical protein identified by match to protein family HMM PF04337 gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2048 YpsIP31758_2049 YpsIP31758_2049 rimJ rimJ 2361722 2362306 - ribosomal-protein-alanine acetyltransferase identified by similarity to SP:P0A948%3B match to protein family HMM PF00583 gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2049 YpsIP31758_2050 YpsIP31758_2050 YpsIP31758_2050 2362600 2363805 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2050 YpsIP31758_2051 YpsIP31758_2051 YpsIP31758_2051 2364222 2364785 + putative lipoprotein identified by match to protein family HMM PF07273 gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2051 YpsIP31758_2052 YpsIP31758_2052 YpsIP31758_2052 2365239 2365799 - cytoplasmic chaperone%2C TorD family identified by match to protein family HMM PF06192 gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2052 YpsIP31758_2053 YpsIP31758_2053 YpsIP31758_2053 2365836 2366573 - putative phosphoesterase identified by match to protein family HMM PF02811 gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2053 YpsIP31758_2054 YpsIP31758_2054 YpsIP31758_2054 2367158 2368270 - ROK family protein identified by match to protein family HMM PF00480 gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2054 YpsIP31758_2055 YpsIP31758_2055 YpsIP31758_2055 2368284 2369114 - glycerophosphoryl diester phosphodiesterase family identified by match to protein family HMM PF03009 gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2055 YpsIP31758_2056 YpsIP31758_2056 YpsIP31758_2056 2369328 2370395 + putative spermidine/putrescine ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2056 YpsIP31758_2057 YpsIP31758_2057 YpsIP31758_2057 2370392 2371258 + putative spermidine/putrescine ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2057 YpsIP31758_2058 YpsIP31758_2058 YpsIP31758_2058 2371255 2372091 + putative spermidine/putrescine ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2058 YpsIP31758_2059 YpsIP31758_2059 YpsIP31758_2059 2372111 2373193 + putative spermidine/putrescine ABC transporter%2C periplasmic spermidine/putrescine-binding protein identified by match to protein family HMM PF01547 gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2059 YpsIP31758_2060 YpsIP31758_2060 YpsIP31758_2060 2373494 2374369 + glycerophosphoryl diester phosphodiesterase family protein identified by match to protein family HMM PF03009 gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2060 YpsIP31758_2061 YpsIP31758_2061 YpsIP31758_2061 2375444 2377141 + sulfate permease family protein identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00815 gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2061 YpsIP31758_2062 YpsIP31758_2062 kdsA kdsA 2377494 2378348 - 3-deoxy-8-phosphooctulonate synthase identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR01362 gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2062 YpsIP31758_2063 YpsIP31758_2063 YpsIP31758_2063 2378444 2379253 - SirB1 protein identified by similarity to SP:P0A2L9 gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2063 YpsIP31758_2064 YpsIP31758_2064 YpsIP31758_2064 2379250 2379651 - sirB family protein identified by similarity to SP:Q46755%3B match to protein family HMM PF04247 gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2064 YpsIP31758_2065 YpsIP31758_2065 YpsIP31758_2065 2379715 2380545 - methyltransferase%2C HemK family identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536%3B match to protein family HMM TIGR03387 gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2065 YpsIP31758_2066 YpsIP31758_2066 prfA prfA 2380545 2381627 - peptide chain release factor 1 identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019 gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2066 YpsIP31758_2067 YpsIP31758_2067 hemA hemA 2381660 2382922 - glutamyl-tRNA reductase identified by match to protein family HMM PF00745%3B match to protein family HMM PF01488%3B match to protein family HMM PF05201%3B match to protein family HMM TIGR01035 gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2067 YpsIP31758_2068 YpsIP31758_2068 lolB lolB 2383228 2383851 + outer membrane lipoprotein LolB identified by match to protein family HMM PF03550%3B match to protein family HMM TIGR00548 gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2068 YpsIP31758_2069 YpsIP31758_2069 ispE ispE 2383853 2384752 + 4-diphosphocytidyl-2C-methyl-D-erythritol kinase identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00154 gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2069 YpsIP31758_2070 YpsIP31758_2070 prs prs 2385093 2386040 + ribose-phosphate pyrophosphokinase identified by similarity to SP:P0A717%3B match to protein family HMM PF00156%3B match to protein family HMM TIGR01251 gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2070 YpsIP31758_2071 YpsIP31758_2071 YpsIP31758_2071 2386242 2386514 - putative membrane protein gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2071 YpsIP31758_2072 YpsIP31758_2072 YpsIP31758_2072 2386138 2386251 + hypothetical protein identified by glimmer%3B putative gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2072 YpsIP31758_2073 YpsIP31758_2073 YpsIP31758_2073 2386603 2386740 - hypothetical protein identified by glimmer%3B putative gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2073 YpsIP31758_2074 YpsIP31758_2074 pth pth 2386876 2387466 + peptidyl-tRNA hydrolase identified by match to protein family HMM PF01195%3B match to protein family HMM TIGR00447 gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2074 YpsIP31758_2075 YpsIP31758_2075 ychF ychF 2387631 2388722 + GTP-binding protein YchF identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092 gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2075 YpsIP31758_2076 YpsIP31758_2076 YpsIP31758_2076 2388935 2389333 + IS3 family transposase%2C orfA identified by similarity to RF:ZP_00993204.1 gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2076 YpsIP31758_2077 YpsIP31758_2077 YpsIP31758_2077 2389351 2389860 + IS3 family transposase%2C orfB identified by similarity to RF:NP_794264.1%3B match to protein family HMM PF00665 gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2077 YpsIP31758_2078 YpsIP31758_2078 YpsIP31758_2078 2389908 2390306 - rhodanese domain protein identified by match to protein family HMM PF00581 gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2078 YpsIP31758_2079 YpsIP31758_2079 YpsIP31758_2079 2390314 2391210 - alpha/beta hydrolase fold domain protein identified by match to protein family HMM PF07859 gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2079 YpsIP31758_2080 YpsIP31758_2080 YpsIP31758_2080 2391207 2391860 - conserved hypothetical protein identified by similarity to GB:CAD18581.1 gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2080 YpsIP31758_2081 YpsIP31758_2081 YpsIP31758_2081 2392063 2392449 - conserved domain protein identified by similarity to RF:YP_088400.1 gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2081 YpsIP31758_2082 YpsIP31758_2082 YpsIP31758_2082 2392640 2393629 - conserved hypothetical protein identified by similarity to RF:ZP_00613603.1 gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2082 YpsIP31758_2083 YpsIP31758_2083 YpsIP31758_2083 2393872 2393997 - hypothetical protein identified by glimmer%3B putative gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2083 YpsIP31758_2084 YpsIP31758_2084 YpsIP31758_2084 2393996 2394688 + DNA-binding heavy metal response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486%3B match to protein family HMM TIGR01387 gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2084 YpsIP31758_2085 YpsIP31758_2085 YpsIP31758_2085 2394700 2396085 + heavy metal sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01386 gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2085 YpsIP31758_2086 YpsIP31758_2086 YpsIP31758_2086 2396362 2396784 + carboxymuconolactone decarboxylase family protein identified by match to protein family HMM PF02627 gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2086 YpsIP31758_2087 YpsIP31758_2087 YpsIP31758_2087 2396839 2397309 + cupin domain protein identified by match to protein family HMM PF07883 gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2087 YpsIP31758_2088 YpsIP31758_2088 YpsIP31758_2088 2397314 2397442 + hypothetical protein identified by glimmer%3B putative gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2088 YpsIP31758_2089 YpsIP31758_2089 YpsIP31758_2089 2397522 2398595 + conserved hypothetical protein gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2089 YpsIP31758_2090 YpsIP31758_2090 YpsIP31758_2090 2399387 2400292 + hypothetical protein identified by glimmer%3B putative gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2090 YpsIP31758_2091 YpsIP31758_2091 YpsIP31758_2091 2400298 2401230 + hypothetical protein identified by glimmer%3B putative gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2091 YpsIP31758_2092 YpsIP31758_2092 YpsIP31758_2092 2401217 2402167 + conserved hypothetical protein identified by similarity to GB:CAH21224.1 gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2092 YpsIP31758_2093 YpsIP31758_2093 YpsIP31758_2093 2402508 2403188 + oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2093 YpsIP31758_2094 YpsIP31758_2094 YpsIP31758_2094 2403293 2403952 + conserved hypothetical protein identified by similarity to SP:P77460 gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2094 YpsIP31758_2095 YpsIP31758_2095 YpsIP31758_2095 2404087 2404725 - conserved hypothetical protein identified by similarity to GB:AAN00767.1%3B match to protein family HMM PF06562 gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2095 YpsIP31758_2096 YpsIP31758_2096 YpsIP31758_2096 2404972 2407083 - conserved hypothetical protein gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2096 YpsIP31758_2097 YpsIP31758_2097 YpsIP31758_2097 2407661 2409823 + conserved hypothetical protein identified by match to protein family HMM PF07661 gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2097 YpsIP31758_2098 YpsIP31758_2098 YpsIP31758_2098 2409887 2411605 + conserved hypothetical protein identified by similarity to GB:CAH21218.1 gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2098 YpsIP31758_2099 YpsIP31758_2099 YpsIP31758_2099 2411775 2412239 + hypothetical protein identified by glimmer%3B putative gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2099 YpsIP31758_2100 YpsIP31758_2100 YpsIP31758_2100 2412400 2413587 - UDP-glycosyltransferase family protein identified by similarity to SP:P21686 gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2100 YpsIP31758_2101 YpsIP31758_2101 YpsIP31758_2101 2413584 2414168 - conserved hypothetical protein gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2101 YpsIP31758_2102 YpsIP31758_2102 YpsIP31758_2102 2414165 2415319 - conserved hypothetical protein identified by similarity to GB:AAS62052.1 gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2102 YpsIP31758_2103 YpsIP31758_2103 YpsIP31758_2103 2415319 2416281 - NAD dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2103 YpsIP31758_2104 YpsIP31758_2104 YpsIP31758_2104 2416415 2417701 - conserved hypothetical protein identified by similarity to GB:CAG73032.1%3B match to protein family HMM TIGR02304 gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2104 YpsIP31758_2105 YpsIP31758_2105 YpsIP31758_2105 2416315 2416440 + hypothetical protein identified by glimmer%3B putative gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2105 YpsIP31758_2106 YpsIP31758_2106 YpsIP31758_2106 2417698 2418504 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2106 YpsIP31758_2107 YpsIP31758_2107 YpsIP31758_2107 2418497 2419513 - NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2107 YpsIP31758_2108 YpsIP31758_2108 YpsIP31758_2108 2419527 2420534 - conserved hypothetical protein identified by similarity to GB:AAN80156.1 gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2108 YpsIP31758_2109 YpsIP31758_2109 YpsIP31758_2109 2421171 2423165 + chorismate binding enzyme domain protein identified by match to protein family HMM PF00425 gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2109 YpsIP31758_2110 YpsIP31758_2110 YpsIP31758_2110 2423343 2423915 - putative cold inducible protein Ves homology to E coli ydjR/ves (EcoGene: EG13994)%3B identified by similarity to SP:P76214%3B match to protein family HMM PF05962 gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2110 YpsIP31758_2111 YpsIP31758_2111 hutF hutF 2423915 2425285 - formiminoglutamate deiminase identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR02022 gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2111 YpsIP31758_2112 YpsIP31758_2112 hutC hutC 2425433 2426200 + histidine utilization repressor identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702%3B match to protein family HMM TIGR02018 gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2112 YpsIP31758_2113 YpsIP31758_2113 hutI hutI 2426411 2427631 + imidazolonepropionase identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR01224 gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2113 YpsIP31758_2114 YpsIP31758_2114 hutG hutG 2427628 2428434 + N-formylglutamate amidohydrolase identified by match to protein family HMM PF05013%3B match to protein family HMM TIGR02017 gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2114 YpsIP31758_2115 YpsIP31758_2115 YpsIP31758_2115 2429029 2430111 - outer membrane protein N identified by similarity to SP:P77747%3B match to protein family HMM PF00267 gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2115 YpsIP31758_2116 YpsIP31758_2116 YpsIP31758_2116 2430207 2430356 + hypothetical protein identified by glimmer%3B putative gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2116 YpsIP31758_2117 YpsIP31758_2117 astE astE 2430838 2431830 - succinylglutamate desuccinylase identified by similarity to SP:P76215%3B match to protein family HMM PF04952%3B match to protein family HMM TIGR03242 gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2117 YpsIP31758_2118 YpsIP31758_2118 astB astB 2431891 2433234 - succinylarginine dihydrolase identified by similarity to SP:P76216%3B match to protein family HMM PF04996%3B match to protein family HMM TIGR03241 gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2118 YpsIP31758_2119 YpsIP31758_2119 astD astD 2433258 2434760 - succinylglutamic semialdehyde dehydrogenase identified by similarity to SP:P76217%3B match to protein family HMM PF00171%3B match to protein family HMM TIGR03240 gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2119 YpsIP31758_2120 YpsIP31758_2120 astA astA 2434772 2435821 - arginine N-succinyltransferase%2C beta subunit identified by match to protein family HMM PF04958%3B match to protein family HMM TIGR03244 gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2120 YpsIP31758_2121 YpsIP31758_2121 argM argM 2435854 2437098 - succinylornithine transaminase identified by similarity to SP:P77581%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00707%3B match to protein family HMM TIGR03246 gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2121 YpsIP31758_2122 YpsIP31758_2122 YpsIP31758_2122 2437735 2439156 - transcriptional regulator%2C GntR family identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392 gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2122 YpsIP31758_2123 YpsIP31758_2123 narX narX 2439466 2441247 + nitrate/nitrite sensor protein NarX identified by similarity to SP:P10956%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM PF07730 gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2123 YpsIP31758_2124 YpsIP31758_2124 chaA chaA 2441814 2442914 + calcium/proton antiporter identified by similarity to SP:P31801%3B match to protein family HMM PF01699%3B match to protein family HMM TIGR00846 gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2124 YpsIP31758_2125 YpsIP31758_2125 YpsIP31758_2125 2443017 2443805 - putative phoH protein identified by similarity to SP:P0A9K1%3B match to protein family HMM PF02562 gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2125 YpsIP31758_2126 YpsIP31758_2126 YpsIP31758_2126 2443865 2444143 - hypothetical protein identified by glimmer%3B putative gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2126 YpsIP31758_2127 YpsIP31758_2127 YpsIP31758_2127 2444582 2445292 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2127 YpsIP31758_2128 YpsIP31758_2128 YpsIP31758_2128 2445831 2446298 - putative biofilm PGA synthesis protein PgaD identified by similarity to SP:P69432 gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2128 YpsIP31758_2129 YpsIP31758_2129 pgaC pgaC 2446295 2447629 - biofilm PGA synthesis N-glycosyltransferase PgaC identified by similarity to SP:P75905%3B match to protein family HMM PF00535 gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2129 YpsIP31758_2130 YpsIP31758_2130 pgaB pgaB 2447619 2449640 - biofilm PGA synthesis lipoprotein PgaB identified by similarity to SP:P75906%3B match to protein family HMM PF01522 gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2130 YpsIP31758_2131 YpsIP31758_2131 pgaA pgaA 2449653 2452121 - biofilm PGA synthesis protein pgaA identified by similarity to SP:P69434%3B match to protein family HMM PF07719 gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2131 YpsIP31758_2132 YpsIP31758_2132 YpsIP31758_2132 2452790 2454007 - peptidase%2C M24 family identified by match to protein family HMM PF00557 gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2132 YpsIP31758_2133 YpsIP31758_2133 tehB tehB 2454148 2455035 - tellurite resistance protein TehB identified by match to protein family HMM PF03848%3B match to protein family HMM TIGR00477 gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2133 YpsIP31758_2134 YpsIP31758_2134 YpsIP31758_2134 2455208 2455519 - cytochrome c family protein identified by match to protein family HMM PF00034 gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2134 YpsIP31758_2135 YpsIP31758_2135 resA resA 2455519 2456016 - thiol-disulfide oxidoreductase identified by similarity to SP:P35160 gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2135 YpsIP31758_2136 YpsIP31758_2136 YpsIP31758_2136 2456006 2456719 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2136 YpsIP31758_2137 YpsIP31758_2137 YpsIP31758_2137 2456723 2457853 - ABC transporter%2C permease protein identified by match to protein family HMM PF02687 gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2137 YpsIP31758_2138 YpsIP31758_2138 YpsIP31758_2138 2457894 2459186 - ABC transporter%2C permease protein identified by match to protein family HMM PF02687 gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2138 YpsIP31758_2139 YpsIP31758_2139 YpsIP31758_2139 2459189 2460598 - YHS domain protein identified by match to protein family HMM PF04945 gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2139 YpsIP31758_2140 YpsIP31758_2140 YpsIP31758_2140 2460899 2461426 - conserved hypothetical protein gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2140 YpsIP31758_2141 YpsIP31758_2141 YpsIP31758_2141 2461630 2463549 - iron permease%2C FTR1 family identified by match to protein family HMM PF03239 gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2141 YpsIP31758_2142 YpsIP31758_2142 YpsIP31758_2142 2464149 2465789 - transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2142 YpsIP31758_2143 YpsIP31758_2143 YpsIP31758_2143 2465900 2466907 - glutaminase identified by match to protein family HMM PF04960 gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2143 YpsIP31758_2144 YpsIP31758_2144 YpsIP31758_2144 2467359 2467565 - hypothetical protein identified by glimmer%3B putative gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2144 YpsIP31758_2145 YpsIP31758_2145 YpsIP31758_2145 2468118 2468888 + transcriptional regulator%2C DeoR family identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2145 YpsIP31758_2146 YpsIP31758_2146 YpsIP31758_2146 2469391 2469510 - hypothetical protein identified by glimmer%3B putative gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2146 YpsIP31758_2147 YpsIP31758_2147 ansP ansP 2469635 2471164 + L-asparagine permease identified by similarity to SP:P40812%3B match to protein family HMM PF00324 gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2147 YpsIP31758_2148 YpsIP31758_2148 YpsIP31758_2148 2471360 2472520 - aminotransferase%2C class I and II identified by match to protein family HMM PF00155 gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2148 YpsIP31758_2149 YpsIP31758_2149 nqrE1 nqrE1 2472872 2473471 + NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit identified by similarity to SP:Q56589%3B match to protein family HMM PF02508%3B match to protein family HMM TIGR01940 gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2149 YpsIP31758_2150 YpsIP31758_2150 YpsIP31758_2150 2473776 2474738 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2150 YpsIP31758_2151 YpsIP31758_2151 YpsIP31758_2151 2474850 2475719 + amidohydrolase family protein identified by match to protein family HMM PF04909 gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2151 YpsIP31758_2152 YpsIP31758_2152 YpsIP31758_2152 2475785 2477014 + transporter%2C major facilitator family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2152 YpsIP31758_2153 YpsIP31758_2153 YpsIP31758_2153 2477234 2477794 + hypothetical protein identified by glimmer%3B putative gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2153 YpsIP31758_2154 YpsIP31758_2154 YpsIP31758_2154 2477819 2478292 + conserved hypothetical protein identified by similarity to GB:CAC90745.1 gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2154 YpsIP31758_2155 YpsIP31758_2155 YpsIP31758_2155 2478367 2479245 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2155 YpsIP31758_2156 YpsIP31758_2156 YpsIP31758_2156 2479340 2480182 + HpcH/HpaI aldolase/citrate lyase family protein identified by match to protein family HMM PF03328 gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2156 YpsIP31758_2157 YpsIP31758_2157 YpsIP31758_2157 2480247 2480774 + MaoC domain protein identified by match to protein family HMM PF01575 gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2157 YpsIP31758_2158 YpsIP31758_2158 cat2 cat2 2480797 2482119 + 4-hydroxybutyrate coenzyme A transferase identified by similarity to SP:P38942%3B match to protein family HMM PF02550 gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2158 YpsIP31758_2159 YpsIP31758_2159 YpsIP31758_2159 2482170 2482292 + hypothetical protein identified by glimmer%3B putative gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2159 YpsIP31758_2160 YpsIP31758_2160 YpsIP31758_2160 2482946 2483578 + DNA-binding response regulator%2C LuxR family identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2160 YpsIP31758_2161 YpsIP31758_2161 YpsIP31758_2161 2483694 2487554 + sensor histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2161 YpsIP31758_2162 YpsIP31758_2162 YpsIP31758_2162 2487784 2487936 - hypothetical protein identified by glimmer%3B putative gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2162 YpsIP31758_2163 YpsIP31758_2163 YpsIP31758_2163 2487935 2488465 + fimbrial protein identified by match to protein family HMM PF00419 gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2163 YpsIP31758_2164 YpsIP31758_2164 YpsIP31758_2164 2488558 2489289 + gram-negative pili assembly chaperone identified by match to protein family HMM PF00345 gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2164 YpsIP31758_2165 YpsIP31758_2165 YpsIP31758_2165 2489365 2491929 + fimbrial usher protein identified by match to protein family HMM PF00577 gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2165 YpsIP31758_2166 YpsIP31758_2166 YpsIP31758_2166 2492017 2493294 + conserved hypothetical protein identified by similarity to GB:BAB34700.1 gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2166 YpsIP31758_2167 YpsIP31758_2167 YpsIP31758_2167 2493291 2494031 + gram-negative pili assembly chaperone identified by match to protein family HMM PF00345 gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2167 YpsIP31758_2168 YpsIP31758_2168 YpsIP31758_2168 2494474 2494698 + hypothetical protein identified by glimmer%3B putative gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2168 YpsIP31758_2169 YpsIP31758_2169 YpsIP31758_2169 2494708 2495850 - carbohydrate uptake (CUT1 family) ABC transporter%2C ATP-binding protein identified by similarity to SP:P19566%3B match to protein family HMM PF00005 gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2169 YpsIP31758_2170 YpsIP31758_2170 YpsIP31758_2170 2495875 2496702 - carbohydrate uptake (CUT1 family) ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2170 YpsIP31758_2171 YpsIP31758_2171 YpsIP31758_2171 2496695 2497537 - carbohydrate uptake (CUT1 family) ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2171 YpsIP31758_2172 YpsIP31758_2172 YpsIP31758_2172 2497608 2498876 - carbohydrate uptake (CUT1 family) ABC transporter%2C periplasmic carbohydrate-binding protein identified by match to protein family HMM PF01547 gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2172 YpsIP31758_2173 YpsIP31758_2173 YpsIP31758_2173 2498906 2499919 - oxidoreductase%2C NAD-binding identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2173 YpsIP31758_2174 YpsIP31758_2174 YpsIP31758_2174 2500076 2500192 + hypothetical protein identified by glimmer%3B putative gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2174 YpsIP31758_2175 YpsIP31758_2175 YpsIP31758_2175 2500327 2500536 + hypothetical protein identified by glimmer%3B putative gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2175 YpsIP31758_2176 YpsIP31758_2176 YpsIP31758_2176 2500580 2501374 - transcriptional regulator%2C GntR family identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702 gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2176 YpsIP31758_2177 YpsIP31758_2177 YpsIP31758_2177 2502343 2502777 + hypothetical protein identified by glimmer%3B putative gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2177 YpsIP31758_2178 YpsIP31758_2178 YpsIP31758_2178 2502789 2503358 + hypothetical protein identified by glimmer%3B putative gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2178 YpsIP31758_2179 YpsIP31758_2179 YpsIP31758_2179 2503776 2504974 - IS285%2C transposase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:CAF28515.1%3B match to protein family HMM PF00872 pseudogene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2179 YpsIP31758_2180 YpsIP31758_2180 YpsIP31758_2180 2505022 2506098 - hypothetical protein identified by glimmer%3B putative gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2180 YpsIP31758_2181 YpsIP31758_2181 YpsIP31758_2181 2506164 2506454 - conserved hypothetical protein identified by similarity to GB:CAE32636.1 gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2181 YpsIP31758_2182 YpsIP31758_2182 YpsIP31758_2182 2506435 2506641 - conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:CAE32637.1%3B match to protein family HMM PF04365 pseudogene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2182 YpsIP31758_2183 YpsIP31758_2183 YpsIP31758_2183 2506842 2507096 + baseplate assembly protein V%2C truncation identified by similarity to SP:P31340%3B match to protein family HMM PF04717 gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2183 YpsIP31758_2184 YpsIP31758_2184 YpsIP31758_2184 2507093 2507392 + baseplate assembly protein W identified by similarity to SP:P51768%3B match to protein family HMM PF04965 gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2184 YpsIP31758_2185 YpsIP31758_2185 YpsIP31758_2185 2507409 2507696 + conserved hypothetical protein identified by similarity to RF:ZP_01176424.1 gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2185 YpsIP31758_2186 YpsIP31758_2186 YpsIP31758_2186 2508131 2508649 + conserved hypothetical protein identified by similarity to GB:AAU48679.1 gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2186 YpsIP31758_2187 YpsIP31758_2187 YpsIP31758_2187 2509054 2510223 + tail sheath protein identified by similarity to SP:P22501%3B match to protein family HMM PF04984 gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2187 YpsIP31758_2188 YpsIP31758_2188 YpsIP31758_2188 2510235 2510750 + tail tube protein identified by match to protein family HMM PF04985%3B match to protein family HMM TIGR01611 gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2188 YpsIP31758_2189 YpsIP31758_2189 YpsIP31758_2189 2510804 2511151 + tail protein identified by match to protein family HMM PF06158 gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2189 YpsIP31758_2190 YpsIP31758_2190 YpsIP31758_2190 2511163 2511285 + tail protein identified by match to protein family HMM PF06528 gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2190 YpsIP31758_2191 YpsIP31758_2191 YpsIP31758_2191 2511299 2514194 + tail tape measure protein%2C TP901 family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to RF:YP_050696.1%3B match to protein family HMM TIGR01760 pseudogene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2191 YpsIP31758_2192 YpsIP31758_2192 YpsIP31758_2192 2514206 2514670 + phage P2 GpU identified by match to protein family HMM PF06995 gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2192 YpsIP31758_2193 YpsIP31758_2193 YpsIP31758_2193 2514667 2515761 + late control gene D protein identified by similarity to SP:P21679%3B match to protein family HMM PF05954 gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2193 YpsIP31758_2194 YpsIP31758_2194 YpsIP31758_2194 2515836 2516051 + phage transcriptional activator%2C Ogr/Delta identified by match to protein family HMM PF04606 gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2194 YpsIP31758_2195 YpsIP31758_2195 YpsIP31758_2195 2516836 2517270 + hypothetical protein identified by glimmer%3B putative gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2195 YpsIP31758_2196 YpsIP31758_2196 YpsIP31758_2196 2517282 2517851 + hypothetical protein identified by glimmer%3B putative gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2196 YpsIP31758_2197 YpsIP31758_2197 YpsIP31758_2197 2518391 2519047 - conserved hypothetical protein identified by similarity to GB:CAA25946.1 gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2197 YpsIP31758_2198 YpsIP31758_2198 YpsIP31758_2198 2519047 2520255 - tail collar domain protein identified by match to protein family HMM PF07484 gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2198 YpsIP31758_2199 YpsIP31758_2199 YpsIP31758_2199 2520267 2520911 - conserved hypothetical protein identified by similarity to RF:ZP_00827832.1 gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2199 YpsIP31758_2200 YpsIP31758_2200 YpsIP31758_2200 2520904 2522103 - conserved hypothetical protein identified by similarity to GB:CAE15401.1 gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2200 YpsIP31758_2201 YpsIP31758_2201 YpsIP31758_2201 2522103 2522453 - conserved hypothetical protein identified by similarity to RF:ZP_00724344.1 gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2201 YpsIP31758_2202 YpsIP31758_2202 YpsIP31758_2202 2522527 2523204 - conserved hypothetical protein identified by similarity to GB:CAE15252.1 gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2202 YpsIP31758_2203 YpsIP31758_2203 YpsIP31758_2203 2523212 2524105 - hypothetical protein identified by glimmer%3B putative gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2203 YpsIP31758_2204 YpsIP31758_2204 YpsIP31758_2204 2524098 2524388 - hypothetical protein identified by glimmer%3B putative gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2204 YpsIP31758_2205 YpsIP31758_2205 YpsIP31758_2205 2524388 2525056 - hypothetical protein identified by glimmer%3B putative gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2205 YpsIP31758_2206 YpsIP31758_2206 YpsIP31758_2206 2525056 2526948 - lysozyme identified by match to protein family HMM PF00959 gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2206 YpsIP31758_2207 YpsIP31758_2207 YpsIP31758_2207 2527623 2527757 - hypothetical protein identified by glimmer%3B putative gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2207 YpsIP31758_2208 YpsIP31758_2208 YpsIP31758_2208 2528070 2528183 - hypothetical protein identified by glimmer%3B putative gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2208 YpsIP31758_2209 YpsIP31758_2209 YpsIP31758_2209 2528182 2529087 + conserved domain protein identified by similarity to RF:ZP_00920520.1 gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2209 YpsIP31758_2210 YpsIP31758_2210 YpsIP31758_2210 2529153 2529550 - conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to RF:NP_597905.1 pseudogene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2210 YpsIP31758_2211 YpsIP31758_2211 YpsIP31758_2211 2529677 2529901 - hypothetical protein identified by glimmer%3B putative gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2211 YpsIP31758_2212 YpsIP31758_2212 YpsIP31758_2212 2529909 2530559 - conserved hypothetical protein identified by similarity to RF:YP_217576.1 gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2212 YpsIP31758_2213 YpsIP31758_2213 YpsIP31758_2213 2530850 2531173 + putative transcriptional regulator identified by similarity to GB:AAD55364.1%3B match to protein family HMM PF03869 gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2213 YpsIP31758_2214 YpsIP31758_2214 YpsIP31758_2214 2531255 2531710 + hypothetical protein identified by glimmer%3B putative gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2214 YpsIP31758_2215 YpsIP31758_2215 YpsIP31758_2215 2531792 2531905 - hypothetical protein identified by glimmer%3B putative gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2215 YpsIP31758_2216 YpsIP31758_2216 YpsIP31758_2216 2531956 2532345 - hypothetical protein identified by glimmer%3B putative gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2216 YpsIP31758_2217 YpsIP31758_2217 YpsIP31758_2217 2532348 2532752 - hypothetical protein identified by glimmer%3B putative gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2217 YpsIP31758_2218 YpsIP31758_2218 YpsIP31758_2218 2532759 2533916 - hypothetical protein identified by glimmer%3B putative gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2218 YpsIP31758_2219 YpsIP31758_2219 YpsIP31758_2219 2533900 2534460 - hypothetical protein identified by glimmer%3B putative gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2219 YpsIP31758_2220 YpsIP31758_2220 YpsIP31758_2220 2534460 2534879 - hypothetical protein identified by glimmer%3B putative gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2220 YpsIP31758_2221 YpsIP31758_2221 YpsIP31758_2221 2534882 2535538 - hypothetical protein identified by glimmer%3B putative gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2221 YpsIP31758_2222 YpsIP31758_2222 YpsIP31758_2222 2535538 2536737 - conserved hypothetical protein identified by similarity to RF:ZP_00827851.1 gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2222 YpsIP31758_2223 YpsIP31758_2223 YpsIP31758_2223 2536749 2537624 - conserved hypothetical protein gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2223 YpsIP31758_2224 YpsIP31758_2224 YpsIP31758_2224 2537557 2538942 - phage-associated protein%2C HI1409 family identified by match to protein family HMM TIGR01555 gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2224 YpsIP31758_2225 YpsIP31758_2225 YpsIP31758_2225 2538945 2540588 - phage uncharacterized protein identified by match to protein family HMM TIGR01630 gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2225 YpsIP31758_2226 YpsIP31758_2226 YpsIP31758_2226 2540715 2540954 + addiction module antitoxin%2C RelB/DinJ family identified by match to protein family HMM PF04221%3B match to protein family HMM TIGR02384 gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2226 YpsIP31758_2227 YpsIP31758_2227 YpsIP31758_2227 2540944 2541228 + addiction module toxin%2C RelE/StbE family identified by match to protein family HMM PF05016%3B match to protein family HMM TIGR02385 gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2227 YpsIP31758_2228 YpsIP31758_2228 YpsIP31758_2228 2541239 2542255 - conserved hypothetical protein identified by similarity to RF:ZP_00827856.1 gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2228 YpsIP31758_2229 YpsIP31758_2229 YpsIP31758_2229 2542259 2542519 - conserved hypothetical protein gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2229 YpsIP31758_2230 YpsIP31758_2230 YpsIP31758_2230 2542522 2543136 - conserved hypothetical protein gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2230 YpsIP31758_2231 YpsIP31758_2231 YpsIP31758_2231 2543133 2543642 - ParB family protein identified by match to protein family HMM PF02195 gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2231 YpsIP31758_2232 YpsIP31758_2232 YpsIP31758_2232 2543824 2543967 + hypothetical protein identified by glimmer%3B putative gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2232 YpsIP31758_2233 YpsIP31758_2233 YpsIP31758_2233 2544101 2544319 + conserved hypothetical protein identified by similarity to GB:AAK88559.1 gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2233 YpsIP31758_2234 YpsIP31758_2234 YpsIP31758_2234 2544364 2544603 + hypothetical protein identified by glimmer%3B putative gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2234 YpsIP31758_2235 YpsIP31758_2235 YpsIP31758_2235 2544820 2544990 - hypothetical protein identified by glimmer%3B putative gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2235 YpsIP31758_2236 YpsIP31758_2236 YpsIP31758_2236 2545238 2545651 - conserved hypothetical protein identified by similarity to SP:O64362 gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2236 YpsIP31758_2237 YpsIP31758_2237 YpsIP31758_2237 2546146 2546373 + prevent-host-death family protein identified by match to protein family HMM PF02604 gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2237 YpsIP31758_2238 YpsIP31758_2238 YpsIP31758_2238 2546397 2546750 + plasmid stabilization system protein%2C RelE/ParE family identified by match to protein family HMM PF05016 gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2238 YpsIP31758_2239 YpsIP31758_2239 YpsIP31758_2239 2546909 2547355 - phage antitermination protein Q identified by match to protein family HMM PF06530 gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2239 YpsIP31758_2240 YpsIP31758_2240 YpsIP31758_2240 2547645 2548238 - conserved hypothetical protein identified by similarity to RF:ZP_00827707.1%3B match to protein family HMM PF07105 gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2240 YpsIP31758_2241 YpsIP31758_2241 YpsIP31758_2241 2549765 2550505 - hypothetical protein identified by glimmer%3B putative gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2241 YpsIP31758_2242 YpsIP31758_2242 YpsIP31758_2242 2550607 2550783 + hypothetical protein identified by glimmer%3B putative gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2242 YpsIP31758_2243 YpsIP31758_2243 YpsIP31758_2243 2550939 2551181 - conserved hypothetical protein identified by similarity to GB:AAY88126.1 gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2243 YpsIP31758_2244 YpsIP31758_2244 YpsIP31758_2244 2551271 2552644 - replicative DNA helicase identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796 gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2244 YpsIP31758_2245 YpsIP31758_2245 YpsIP31758_2245 2552641 2553684 - conserved hypothetical protein identified by similarity to RF:ZP_00827716.1 gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2245 YpsIP31758_2246 YpsIP31758_2246 YpsIP31758_2246 2553928 2554392 - conserved hypothetical protein gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2246 YpsIP31758_2247 YpsIP31758_2247 YpsIP31758_2247 2554426 2554632 - conserved hypothetical protein gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2247 YpsIP31758_2248 YpsIP31758_2248 YpsIP31758_2248 2554676 2555386 + repressor protein C2 identified by similarity to SP:P69202%3B match to protein family HMM PF00717%3B match to protein family HMM PF01381 gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2248 YpsIP31758_2249 YpsIP31758_2249 YpsIP31758_2249 2555727 2555963 + conserved hypothetical protein identified by similarity to RF:ZP_00700047.1 gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2249 YpsIP31758_2250 YpsIP31758_2250 YpsIP31758_2250 2555953 2556969 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2250 YpsIP31758_2251 YpsIP31758_2251 pgsA pgsA 2557551 2558099 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00560 gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2251 YpsIP31758_2252 YpsIP31758_2252 uvrC uvrC 2558158 2559990 - UvrABC system%2C C protein identified by similarity to SP:P0A8G0%3B match to protein family HMM PF00633%3B match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00194 gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2252 YpsIP31758_2253 YpsIP31758_2253 uvrY uvrY 2559983 2560639 - response regulator UvrY identified by similarity to SP:P0AED5%3B match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2253 YpsIP31758_2254 YpsIP31758_2254 YpsIP31758_2254 2561303 2561527 + conserved hypothetical protein identified by similarity to SP:P0AD09 gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2254 YpsIP31758_2255 YpsIP31758_2255 YpsIP31758_2255 2561655 2561996 + GlpM protein identified by match to protein family HMM PF06942 gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2255 YpsIP31758_2256 YpsIP31758_2256 YpsIP31758_2256 2562024 2562278 - putative membrane protein gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2256 YpsIP31758_2257 YpsIP31758_2257 YpsIP31758_2257 2562619 2563170 - Ail/Lom family protein identified by similarity to SP:P16454%3B match to protein family HMM PF06316%3B match to protein family HMM TIGR03304 gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2257 YpsIP31758_2258 YpsIP31758_2258 YpsIP31758_2258 2563197 2563319 - hypothetical protein identified by glimmer%3B putative gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2258 YpsIP31758_2259 YpsIP31758_2259 cycA cycA 2564294 2565709 + D-serine/D-alanine/glycine transporter identified by similarity to SP:P0AAE0%3B match to protein family HMM PF00324 gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2259 YpsIP31758_2260 YpsIP31758_2260 YpsIP31758_2260 2565835 2567013 - kelch domain protein identified by match to protein family HMM PF01344%3B match to protein family HMM PF07646 gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2260 YpsIP31758_2261 YpsIP31758_2261 wrbA wrbA 2567407 2568006 + flavoprotein WrbA identified by similarity to SP:P0A8G6%3B match to protein family HMM PF00258%3B match to protein family HMM PF03358%3B match to protein family HMM TIGR01755 gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2261 YpsIP31758_2262 YpsIP31758_2262 YpsIP31758_2262 2568092 2569396 - Dyp-type peroxidase family protein identified by match to protein family HMM PF04261%3B match to protein family HMM TIGR01412%3B match to protein family HMM TIGR01413 gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2262 YpsIP31758_2263 YpsIP31758_2263 YpsIP31758_2263 2569407 2570537 - conserved hypothetical protein identified by similarity to SP:P0AB25%3B match to protein family HMM PF04302 gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2263 YpsIP31758_2264 YpsIP31758_2264 efeU efeU 2570567 2571415 - ferrous iron permease EfeU formerly E coli YcdN%3B identified by similarity to SP:P75901%3B match to protein family HMM PF03239 gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2264 YpsIP31758_2265 YpsIP31758_2265 putP putP 2571766 2573250 - sodium/proline symporter identified by similarity to SP:P07117%3B match to protein family HMM PF00474%3B match to protein family HMM TIGR00813%3B match to protein family HMM TIGR02121 gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2265 YpsIP31758_2266 YpsIP31758_2266 YpsIP31758_2266 2573280 2573450 - hypothetical protein identified by glimmer%3B putative gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2266 YpsIP31758_2267 YpsIP31758_2267 YpsIP31758_2267 2573646 2573795 + hypothetical protein identified by glimmer%3B putative gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2267 YpsIP31758_2268 YpsIP31758_2268 putA putA 2573823 2577794 + bifunctional PutA protein identified by similarity to SP:P09546%3B match to protein family HMM PF00171%3B match to protein family HMM PF01619%3B match to protein family HMM TIGR01238 gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2268 YpsIP31758_2269 YpsIP31758_2269 YpsIP31758_2269 2578348 2578641 + conserved hypothetical protein identified by similarity to RF:ZP_00821988.1 gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2269 YpsIP31758_2270 YpsIP31758_2270 YpsIP31758_2270 2578641 2579012 + conserved hypothetical protein identified by similarity to GB:AAS61779.1 gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2270 YpsIP31758_2271 YpsIP31758_2271 YpsIP31758_2271 2579113 2579238 - hypothetical protein identified by glimmer%3B putative gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2271 YpsIP31758_2272 YpsIP31758_2272 YpsIP31758_2272 2579304 2580065 - amino acid ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2272 YpsIP31758_2273 YpsIP31758_2273 YpsIP31758_2273 2580068 2580730 - amino acid ABC transporter%2C permease protein identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2273 YpsIP31758_2274 YpsIP31758_2274 fliY fliY 2580730 2581530 - cystine-binding periplasmic protein FliY identified by similarity to SP:P0AEM9%3B match to protein family HMM PF00497 gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2274 YpsIP31758_2275 YpsIP31758_2275 dcyD dcyD 2581654 2582646 - D-cysteine desulfhydrase identified by similarity to SP:P76316%3B match to protein family HMM PF00291%3B match to protein family HMM TIGR01275 gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2275 YpsIP31758_2276 YpsIP31758_2276 YpsIP31758_2276 2581547 2581669 + hypothetical protein identified by glimmer%3B putative gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2276 YpsIP31758_2277 YpsIP31758_2277 YpsIP31758_2277 2582632 2582757 + hypothetical protein identified by glimmer%3B putative gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2277 YpsIP31758_2278 YpsIP31758_2278 fliZ fliZ 2582935 2583444 - protein FliZ identified by similarity to SP:P0A210%3B match to protein family HMM PF02899 gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2278 YpsIP31758_2279 YpsIP31758_2279 YpsIP31758_2279 2583444 2583596 - hypothetical protein identified by glimmer%3B putative gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2279 YpsIP31758_2280 YpsIP31758_2280 fliA1 fliA1 2583679 2584401 - RNA polymerase sigma factor for flagellar operon identified by similarity to SP:P31804%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02479%3B match to protein family HMM TIGR02937 gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2280 YpsIP31758_2281 YpsIP31758_2281 YpsIP31758_2281 2584748 2585857 - flagellin identified by similarity to SP:Q06971%3B match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2281 YpsIP31758_2282 YpsIP31758_2282 YpsIP31758_2282 2585873 2585989 + hypothetical protein identified by glimmer%3B putative gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2282 YpsIP31758_2283 YpsIP31758_2283 fliD2 fliD2 2586154 2587554 + flagellar hook-associated protein 2 identified by similarity to SP:P24216%3B match to protein family HMM PF02465%3B match to protein family HMM PF07195%3B match to protein family HMM PF07196 gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2283 YpsIP31758_2284 YpsIP31758_2284 fliS2 fliS2 2587565 2587963 + flagellar protein FliS identified by match to protein family HMM PF02561%3B match to protein family HMM TIGR00208 gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2284 YpsIP31758_2285 YpsIP31758_2285 fliT fliT 2587974 2588336 + flagellar protein FliT identified by similarity to SP:P0ABY2%3B match to protein family HMM PF05400 gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2285 YpsIP31758_2286 YpsIP31758_2286 YpsIP31758_2286 2588637 2589512 + transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165 gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2286 YpsIP31758_2287 YpsIP31758_2287 YpsIP31758_2287 2589866 2592820 + HAMP domain protein identified by match to protein family HMM PF00672 gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2287 YpsIP31758_2288 YpsIP31758_2288 YpsIP31758_2288 2592981 2593592 + base excision DNA repair protein%2C HhH-GPD family identified by match to protein family HMM PF00730 gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2288 YpsIP31758_2289 YpsIP31758_2289 fliE1 fliE1 2594960 2595277 - flagellar hook-basal body complex protein (FliE) identified by similarity to SP:P0A8T5%3B similarity to GB:AAA23800.1%3B match to protein family HMM PF02049%3B match to protein family HMM TIGR00205 gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2289 YpsIP31758_2290 YpsIP31758_2290 fliF1 fliF1 2595624 2597336 + flagellar M-ring protein FliF identified by similarity to SP:P25798%3B match to protein family HMM PF01514%3B match to protein family HMM TIGR00206 gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2290 YpsIP31758_2291 YpsIP31758_2291 fliG1 fliG1 2597333 2598325 + flagellar motor switch protein FliG identified by similarity to SP:P0ABZ1%3B match to protein family HMM PF01706%3B match to protein family HMM TIGR00207 gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2291 YpsIP31758_2292 YpsIP31758_2292 fliH2 fliH2 2598318 2599034 + flagellar assembly protein FliH identified by similarity to SP:P31068%3B match to protein family HMM PF02108 gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2292 YpsIP31758_2293 YpsIP31758_2293 fliI1 fliI1 2599034 2600452 + flagellar protein export ATPase FliI identified by similarity to SP:P52612%3B match to protein family HMM PF00006%3B match to protein family HMM TIGR01026%3B match to protein family HMM TIGR02545 gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2293 YpsIP31758_2294 YpsIP31758_2294 fliJ1 fliJ1 2600563 2601009 + flagellar export protein FliJ identified by similarity to SP:P52613%3B match to protein family HMM PF02050%3B match to protein family HMM TIGR02473 gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2294 YpsIP31758_2295 YpsIP31758_2295 fliK1 fliK1 2601006 2602364 + flagellar hook-length control protein identified by similarity to SP:P52614%3B match to protein family HMM PF02120 gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2295 YpsIP31758_2296 YpsIP31758_2296 YpsIP31758_2296 2602389 2602511 + hypothetical protein identified by glimmer%3B putative gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2296 YpsIP31758_2297 YpsIP31758_2297 YpsIP31758_2297 2602522 2602638 + hypothetical protein identified by glimmer%3B putative gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2297 YpsIP31758_2298 YpsIP31758_2298 fliL fliL 2602631 2603101 + flagellar basal body-associated protein FliL identified by similarity to SP:P26417%3B match to protein family HMM PF03748 gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2298 YpsIP31758_2299 YpsIP31758_2299 fliM fliM 2603107 2604108 + flagellar motor switch protein FliM identified by similarity to SP:P06974%3B match to protein family HMM PF02154%3B match to protein family HMM TIGR01397 gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2299 YpsIP31758_2300 YpsIP31758_2300 fliN1 fliN1 2604105 2604521 + flagellar motor switch protein FliN identified by similarity to SP:P15070%3B match to protein family HMM PF01052%3B match to protein family HMM TIGR02480 gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2300 YpsIP31758_2301 YpsIP31758_2301 fliO fliO 2604521 2605057 + flagellar protein fliO identified by similarity to SP:P22586%3B match to protein family HMM PF04347 gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2301 YpsIP31758_2302 YpsIP31758_2302 fliP2 fliP2 2605054 2605878 + flagellar biosynthetic protein FliP identified by similarity to SP:P0AC05%3B match to protein family HMM PF00813%3B match to protein family HMM TIGR01103 gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2302 YpsIP31758_2303 YpsIP31758_2303 fliQ1 fliQ1 2605984 2606253 + flagellar biosynthetic protein FliQ identified by similarity to GB:AAU27867.1%3B match to protein family HMM PF01313%3B match to protein family HMM TIGR01402 gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2303 YpsIP31758_2304 YpsIP31758_2304 fliR1 fliR1 2606256 2607038 + flagellar biosynthetic protein FliR identified by similarity to SP:P33135%3B match to protein family HMM PF01311%3B match to protein family HMM TIGR01400 gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2304 YpsIP31758_2305 YpsIP31758_2305 YpsIP31758_2305 2607472 2607891 + conserved hypothetical protein identified by similarity to GB:CAC90634.1%3B match to protein family HMM PF03681 gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2305 YpsIP31758_2306 YpsIP31758_2306 YpsIP31758_2306 2608151 2609110 - kinase%2C pfkB family identified by match to protein family HMM PF00294 gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2306 YpsIP31758_2307 YpsIP31758_2307 YpsIP31758_2307 2609159 2610181 - carbohydrate uptake ABC transporter 2 (CUT2) family%2C permease protein identified by match to protein family HMM PF02653 gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2307 YpsIP31758_2308 YpsIP31758_2308 YpsIP31758_2308 2610184 2611761 - carbohydrate uptake ABC transporter 2 (CUT2) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2308 YpsIP31758_2309 YpsIP31758_2309 YpsIP31758_2309 2611827 2612822 - carbohydrate uptake ABC transporter 2 (CUT2) family%2C periplasmic carbohydrate-binding protein gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2309 YpsIP31758_2310 YpsIP31758_2310 YpsIP31758_2310 2612865 2613926 - carbohydrate uptake ABC transporter 2 (CUT2) family%2C permease protein identified by match to protein family HMM PF02653 gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2310 YpsIP31758_2311 YpsIP31758_2311 YpsIP31758_2311 2614074 2616140 - oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2311 YpsIP31758_2312 YpsIP31758_2312 YpsIP31758_2312 2616358 2617359 + putative sugar-binding domain protein identified by match to protein family HMM PF04198 gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2312 YpsIP31758_2313 YpsIP31758_2313 flgL1 flgL1 2617388 2618368 - flagellar hook-associated protein 3 identified by similarity to SP:P29744%3B match to protein family HMM PF00669%3B match to protein family HMM TIGR02550 gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2313 YpsIP31758_2314 YpsIP31758_2314 flgK1 flgK1 2618507 2620171 - flagellar hook-associated protein FlgK identified by similarity to SP:P33235%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02492 gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2314 YpsIP31758_2315 YpsIP31758_2315 YpsIP31758_2315 2620319 2620438 - hypothetical protein identified by glimmer%3B putative gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2315 YpsIP31758_2316 YpsIP31758_2316 flgJ flgJ 2620863 2621807 - flagellar rod assembly protein/muramidase FlgJ identified by similarity to SP:P75942%3B match to protein family HMM PF01832%3B match to protein family HMM TIGR02541 gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2316 YpsIP31758_2317 YpsIP31758_2317 flgI2 flgI2 2621807 2622916 - flagellar P-ring protein FlgI identified by match to protein family HMM PF02119 gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2317 YpsIP31758_2318 YpsIP31758_2318 flgH1 flgH1 2622931 2623662 - flagellar L-ring protein FlgH identified by match to protein family HMM PF02107 gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2318 YpsIP31758_2319 YpsIP31758_2319 flgG2 flgG2 2623764 2624546 - flagellar basal-body rod protein FlgG identified by similarity to SP:P0ABX5%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02488 gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2319 YpsIP31758_2320 YpsIP31758_2320 flgF2 flgF2 2624572 2625327 - flagellar basal-body rod protein FlgF identified by similarity to SP:P75938%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02490 gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2320 YpsIP31758_2321 YpsIP31758_2321 flgE1 flgE1 2625349 2626635 - flagellar hook protein FlgE identified by similarity to SP:P75937%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM PF07559 gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2321 YpsIP31758_2322 YpsIP31758_2322 flgD1 flgD1 2626837 2627523 - basal-body rod modification protein FlgD identified by similarity to SP:P75936%3B match to protein family HMM PF03963 gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2322 YpsIP31758_2323 YpsIP31758_2323 flgC1 flgC1 2627538 2627942 - flagellar basal-body rod protein FlgC identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR01395 gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2323 YpsIP31758_2324 YpsIP31758_2324 flgB2 flgB2 2627948 2628361 - flagellar basal-body rod protein FlgB identified by similarity to SP:P0ABW9%3B match to protein family HMM PF00460%3B match to protein family HMM TIGR01396 gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2324 YpsIP31758_2325 YpsIP31758_2325 flgA flgA 2628600 2629298 + flagella basal body P-ring formation protein FlgA identified by similarity to SP:P75933%3B match to protein family HMM PF03240%3B match to protein family HMM TIGR03170 gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2325 YpsIP31758_2326 YpsIP31758_2326 YpsIP31758_2326 2629302 2629472 - hypothetical protein identified by glimmer%3B putative gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2326 YpsIP31758_2327 YpsIP31758_2327 flgM flgM 2629449 2629751 + negative regulator of flagellin synthesis identified by similarity to SP:P43532%3B match to protein family HMM PF04316 gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2327 YpsIP31758_2328 YpsIP31758_2328 flgN flgN 2629770 2630210 + flagella synthesis protein FlgN identified by similarity to SP:P43533%3B match to protein family HMM PF05130 gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2328 YpsIP31758_2329 YpsIP31758_2329 YpsIP31758_2329 2630391 2633216 - invasin identified by similarity to SP:P11922%3B match to protein family HMM PF02369%3B match to protein family HMM PF07979 gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2329 YpsIP31758_2330 YpsIP31758_2330 YpsIP31758_2330 2633215 2633358 + hypothetical protein identified by glimmer%3B putative gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2330 YpsIP31758_2331 YpsIP31758_2331 YpsIP31758_2331 2633728 2633850 + hypothetical protein identified by glimmer%3B putative gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2331 YpsIP31758_2332 YpsIP31758_2332 flhE flhE 2633957 2634379 - flagellar protein FlhE identified by similarity to SP:P76297%3B match to protein family HMM PF06366 gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2332 YpsIP31758_2333 YpsIP31758_2333 flhA1 flhA1 2634379 2636457 - flagellar biosynthesis protein FlhA identified by similarity to SP:P40729%3B match to protein family HMM PF00771%3B match to protein family HMM TIGR01398 gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2333 YpsIP31758_2334 YpsIP31758_2334 flhB1 flhB1 2636457 2637617 - flagellar biosynthetic protein FlhB identified by similarity to SP:P40727%3B match to protein family HMM PF01312%3B match to protein family HMM TIGR00328 gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2334 YpsIP31758_2335 YpsIP31758_2335 YpsIP31758_2335 2638149 2638607 + conserved hypothetical protein identified by similarity to GB:AAV76846.1 gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2335 YpsIP31758_2336 YpsIP31758_2336 YpsIP31758_2336 2638601 2638927 + conserved hypothetical protein identified by similarity to GB:AAV76847.1%3B match to protein family HMM PF07377 gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2336 YpsIP31758_2337 YpsIP31758_2337 YpsIP31758_2337 2639450 2639791 - conserved hypothetical protein identified by similarity to SP:P64507 gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2337 YpsIP31758_2338 YpsIP31758_2338 copD copD 2639888 2640772 - copper resistance protein D identified by similarity to SP:Q47455%3B match to protein family HMM PF05425 gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2338 YpsIP31758_2339 YpsIP31758_2339 copC copC 2640775 2641161 - copper resistance protein CopC identified by match to protein family HMM PF04234 gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2339 YpsIP31758_2340 YpsIP31758_2340 YpsIP31758_2340 2641393 2641527 + hypothetical protein identified by glimmer%3B putative gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2340 YpsIP31758_2341 YpsIP31758_2341 YpsIP31758_2341 2641588 2642097 - ferritin family protein identified by match to protein family HMM PF00210 gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2341 YpsIP31758_2342 YpsIP31758_2342 YpsIP31758_2342 2642327 2642452 - hypothetical protein identified by glimmer%3B putative gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2342 YpsIP31758_2343 YpsIP31758_2343 holE holE 2642498 2642728 + DNA polymerase III%2C theta subunit identified by similarity to SP:P0ABS8%3B match to protein family HMM PF06440 gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2343 YpsIP31758_2344 YpsIP31758_2344 pip pip 2642788 2643738 - proline iminopeptidase identified by similarity to SP:P52279%3B match to protein family HMM PF00561%3B match to protein family HMM TIGR01249 gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2344 YpsIP31758_2345 YpsIP31758_2345 YpsIP31758_2345 2644060 2644173 + hypothetical protein identified by glimmer%3B putative gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2345 YpsIP31758_2346 YpsIP31758_2346 ptrB ptrB 2644458 2646509 - protease II identified by similarity to SP:P24555%3B match to protein family HMM PF00326%3B match to protein family HMM PF02897 gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2346 YpsIP31758_2347 YpsIP31758_2347 YpsIP31758_2347 2646819 2647229 - secreted protein YebF identified by similarity to SP:P33219 gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2347 YpsIP31758_2348 YpsIP31758_2348 YpsIP31758_2348 2647336 2647644 - conserved hypothetical protein identified by similarity to GB:AAS61848.1%3B match to protein family HMM PF06164 gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2348 YpsIP31758_2349 YpsIP31758_2349 YpsIP31758_2349 2647684 2648004 - conserved hypothetical protein identified by similarity to SP:P0ACY9%3B match to protein family HMM PF07130 gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2349 YpsIP31758_2350 YpsIP31758_2350 dbpA dbpA 2648098 2649480 - ATP-independent RNA helicase DbpA identified by similarity to SP:P21693%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880 gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2350 YpsIP31758_2351 YpsIP31758_2351 purT purT 2649793 2650974 + phosphoribosylglycinamide formyltransferase 2 identified by match to protein family HMM PF02222%3B match to protein family HMM TIGR01142 gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2351 YpsIP31758_2352 YpsIP31758_2352 YpsIP31758_2352 2651104 2651361 - conserved hypothetical protein identified by similarity to SP:Q8ZFE0%3B match to protein family HMM PF03701 gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2352 YpsIP31758_2353 YpsIP31758_2353 pabB pabB 2651526 2652902 + para-aminobenzoate synthase%2C component I identified by match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00553 gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2353 YpsIP31758_2354 YpsIP31758_2354 YpsIP31758_2354 2652899 2653498 + hydrolase%2C NUDIX family identified by match to protein family HMM PF00293 gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2354 YpsIP31758_2355 YpsIP31758_2355 sdaA sdaA 2654226 2655590 + L-serine ammonia-lyase identified by similarity to SP:P16095%3B match to protein family HMM PF03313%3B match to protein family HMM PF03315%3B match to protein family HMM TIGR00720 gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2355 YpsIP31758_2356 YpsIP31758_2356 hpaC hpaC 2655870 2656367 - 4-hydroxyphenylacetate 3-monooxygenase%2C reductase component identified by match to protein family HMM PF01613%3B match to protein family HMM TIGR02296 gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2356 YpsIP31758_2357 YpsIP31758_2357 hpaB hpaB 2656388 2657950 - 4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component identified by similarity to SP:Q57160%3B match to protein family HMM PF03241%3B match to protein family HMM TIGR02310 gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2357 YpsIP31758_2358 YpsIP31758_2358 hpaX hpaX 2658018 2659385 - 4-hydroxyphenylacetate permease identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR02332 gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2358 YpsIP31758_2359 YpsIP31758_2359 hpaI hpaI 2659411 2660217 - 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase identified by match to protein family HMM PF03328%3B match to protein family HMM TIGR02311 gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2359 YpsIP31758_2360 YpsIP31758_2360 hpaH hpaH 2660228 2661031 - 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase identified by similarity to SP:P42270%3B match to protein family HMM PF01689%3B match to protein family HMM TIGR02312 gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2360 YpsIP31758_2361 YpsIP31758_2361 hpaF hpaF 2661025 2661423 - 5-carboxymethyl-2-hydroxymuconate delta isomerase identified by match to protein family HMM PF02962 gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2361 YpsIP31758_2362 YpsIP31758_2362 hpaD hpaD 2661448 2662305 - 3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase identified by match to protein family HMM PF02900%3B match to protein family HMM TIGR02298 gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2362 YpsIP31758_2363 YpsIP31758_2363 hpaE hpaE 2662424 2663890 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR02299 gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2363 YpsIP31758_2364 YpsIP31758_2364 hpaG2 hpaG2 2663887 2664651 - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase%2C C-terminal subunit identified by match to protein family HMM PF01557%3B match to protein family HMM TIGR02303 gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2364 YpsIP31758_2365 YpsIP31758_2365 hpaG1 hpaG1 2664648 2665280 - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase%2C N-terminal subunit identified by match to protein family HMM PF01557%3B match to protein family HMM TIGR02305 gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2365 YpsIP31758_2366 YpsIP31758_2366 hpaR hpaR 2665650 2666117 + homoprotocatechuate degradation operon regulator%2C HpaR identified by match to protein family HMM PF01047%3B match to protein family HMM TIGR02337 gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2366 YpsIP31758_2367 YpsIP31758_2367 YpsIP31758_2367 2666219 2667763 - membrane protein TerC family/CBS domain protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF03471%3B match to protein family HMM PF03741 gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2367 YpsIP31758_2368 YpsIP31758_2368 YpsIP31758_2368 2668474 2669448 + PTS system%2C mannose/fructose/sorbose family%2C IIB component identified by match to protein family HMM PF03610%3B match to protein family HMM PF03830%3B match to protein family HMM TIGR00824%3B match to protein family HMM TIGR00854 gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2368 YpsIP31758_2369 YpsIP31758_2369 YpsIP31758_2369 2669540 2670337 + PTS system%2C mannose/fructose/sorbose family%2C IIC component identified by match to protein family HMM PF03609%3B match to protein family HMM TIGR00822 gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2369 YpsIP31758_2370 YpsIP31758_2370 YpsIP31758_2370 2670353 2671231 + PTS system%2C mannose/fructose/sorbose family%2C IID component identified by match to protein family HMM PF03613%3B match to protein family HMM TIGR00828 gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2370 YpsIP31758_2371 YpsIP31758_2371 YpsIP31758_2371 2671431 2671892 + conserved hypothetical protein identified by similarity to SP:Q8ZFF7%3B match to protein family HMM PF06173 gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2371 YpsIP31758_2372 YpsIP31758_2372 YpsIP31758_2372 2672321 2672890 + putative membrane protein identified by match to protein family HMM PF02659 gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2372 YpsIP31758_2373 YpsIP31758_2373 fcuA fcuA 2673051 2675342 - ferrichrome receptor FcuA identified by similarity to SP:Q05202%3B match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783 gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2373 YpsIP31758_2374 YpsIP31758_2374 YpsIP31758_2374 2675701 2677782 + putative sensory box-containing diguanylate cyclase identified by match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2374 YpsIP31758_2375 YpsIP31758_2375 YpsIP31758_2375 2678004 2678282 + hypothetical protein identified by glimmer%3B putative gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2375 YpsIP31758_2376 YpsIP31758_2376 rrmA rrmA 2678504 2679343 - ribosomal RNA large subunit methyltransferase A identified by similarity to SP:P36999 gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2376 YpsIP31758_2377 YpsIP31758_2377 YpsIP31758_2377 2679739 2680512 + conserved hypothetical protein identified by similarity to GB:AAS61726.1%3B match to protein family HMM PF02578 gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2377 YpsIP31758_2378 YpsIP31758_2378 YpsIP31758_2378 2680648 2680839 + conserved hypothetical protein identified by similarity to GB:AAN80689.1 gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2378 YpsIP31758_2379 YpsIP31758_2379 YpsIP31758_2379 2681408 2681572 + hypothetical protein identified by glimmer%3B putative gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2379 YpsIP31758_2380 YpsIP31758_2380 pagP pagP 2682024 2682581 + antimicrobial peptide resistance/lipid A acylation protein identified by similarity to SP:P37001%3B match to protein family HMM PF07017 gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2380 YpsIP31758_2381 YpsIP31758_2381 aroP1 aroP1 2682877 2684250 - aromatic amino acid transport protein AroP identified by similarity to SP:P15993%3B match to protein family HMM PF00324 gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2381 YpsIP31758_2382 YpsIP31758_2382 YpsIP31758_2382 2684487 2684732 - conserved hypothetical protein identified by similarity to GB:CAD05407.1 gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2382 YpsIP31758_2383 YpsIP31758_2383 YpsIP31758_2383 2684841 2685140 - conserved hypothetical protein identified by similarity to GB:CAD09872.1 gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2383 YpsIP31758_2384 YpsIP31758_2384 YpsIP31758_2384 2685403 2685678 - conserved hypothetical protein identified by similarity to SP:Q8XCN8 gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2384 YpsIP31758_2385 YpsIP31758_2385 YpsIP31758_2385 2686261 2686494 + conserved hypothetical protein gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2385 YpsIP31758_2386 YpsIP31758_2386 YpsIP31758_2386 2686585 2686824 - conserved hypothetical protein identified by similarity to SP:P0AD10 gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2386 YpsIP31758_2387 YpsIP31758_2387 YpsIP31758_2387 2687380 2687766 + transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165 gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2387 YpsIP31758_2388 YpsIP31758_2388 YpsIP31758_2388 2687848 2688012 - hypothetical protein identified by glimmer%3B putative gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2388 YpsIP31758_2389 YpsIP31758_2389 YpsIP31758_2389 2688667 2690385 + ABC transporter%2C permease protein/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2389 YpsIP31758_2390 YpsIP31758_2390 YpsIP31758_2390 2690488 2691339 + RIO1 family protein kinase identified by match to protein family HMM PF01163 gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2390 YpsIP31758_2391 YpsIP31758_2391 YpsIP31758_2391 2691576 2691860 + YciI domain protein identified by match to protein family HMM PF03795 gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2391 YpsIP31758_2392 YpsIP31758_2392 YpsIP31758_2392 2692250 2693062 + conserved hypothetical protein identified by match to protein family HMM PF06167 gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2392 YpsIP31758_2393 YpsIP31758_2393 YpsIP31758_2393 2693473 2694489 - sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2393 YpsIP31758_2394 YpsIP31758_2394 lacY lacY 2694844 2696151 + lactose permease identified by similarity to SP:P02920%3B match to protein family HMM PF01306%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00882 gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2394 YpsIP31758_2395 YpsIP31758_2395 agaN agaN 2696229 2698355 + alpha-galactosidase AgaN identified by similarity to GB:AAD23585.1%3B match to protein family HMM PF02065 gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2395 YpsIP31758_2396 YpsIP31758_2396 YpsIP31758_2396 2698372 2698536 + hypothetical protein identified by glimmer%3B putative gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2396 YpsIP31758_2397 YpsIP31758_2397 YpsIP31758_2397 2698603 2698752 - hypothetical protein identified by glimmer%3B putative gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2397 YpsIP31758_2398 YpsIP31758_2398 YpsIP31758_2398 2698742 2699482 - 4'-phosphopantetheinyl transferase family protein identified by match to protein family HMM PF01648 gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2398 YpsIP31758_2399 YpsIP31758_2399 YpsIP31758_2399 2699991 2700983 + TRAP transporter solute receptor%2C DctP family identified by match to protein family HMM PF03480%3B match to protein family HMM TIGR00787 gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2399 YpsIP31758_2400 YpsIP31758_2400 YpsIP31758_2400 2701107 2701613 + TRAP transporter%2C DctQ-like membrane protein identified by match to protein family HMM PF04290 gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2400 YpsIP31758_2401 YpsIP31758_2401 YpsIP31758_2401 2701633 2702925 + TRAP transporter%2C DctM subunit identified by match to protein family HMM PF06808%3B match to protein family HMM TIGR00786 gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2401 YpsIP31758_2402 YpsIP31758_2402 YpsIP31758_2402 2703183 2703812 + DNA-binding response regulator%2C LuxR family identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2402 YpsIP31758_2403 YpsIP31758_2403 YpsIP31758_2403 2704696 2705235 - conserved hypothetical protein identified by similarity to RF:YP_049679.1 gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2403 YpsIP31758_2404 YpsIP31758_2404 YpsIP31758_2404 2705325 2706020 - hypothetical protein identified by glimmer%3B putative gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2404 YpsIP31758_2405 YpsIP31758_2405 YpsIP31758_2405 2706597 2707478 + polysaccharide deacetylase family protein identified by match to protein family HMM PF01522 gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2405 YpsIP31758_2406 YpsIP31758_2406 YpsIP31758_2406 2707514 2708854 + transporter%2C major facilitator family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2406 YpsIP31758_2407 YpsIP31758_2407 YpsIP31758_2407 2708882 2710312 - MATE efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2407 YpsIP31758_2408 YpsIP31758_2408 argG argG 2710606 2711973 + argininosuccinate synthase identified by match to protein family HMM PF00764%3B match to protein family HMM TIGR00032 gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2408 YpsIP31758_2409 YpsIP31758_2409 lldD lldD 2712178 2713323 - L-lactate dehydrogenase (cytochrome) identified by similarity to SP:P33232%3B match to protein family HMM PF01070 gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2409 YpsIP31758_2410 YpsIP31758_2410 YpsIP31758_2410 2713620 2714897 - mandelate racemase/muconate lactonizing enzyme family protein identified by match to protein family HMM PF01188 gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2410 YpsIP31758_2411 YpsIP31758_2411 YpsIP31758_2411 2714929 2715771 - fumarylacetoacetate hydrolase family protein identified by match to protein family HMM PF01557 gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2411 YpsIP31758_2412 YpsIP31758_2412 YpsIP31758_2412 2715819 2716559 - oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2412 YpsIP31758_2413 YpsIP31758_2413 YpsIP31758_2413 2716987 2717409 + conserved hypothetical protein identified by match to protein family HMM PF04134 gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2413 YpsIP31758_2414 YpsIP31758_2414 YpsIP31758_2414 2717418 2718722 - transporter%2C major facilitator family YfaV%3B identified by match to protein family HMM PF07690 gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2414 YpsIP31758_2415 YpsIP31758_2415 YpsIP31758_2415 2718890 2719078 + conserved hypothetical protein identified by similarity to GB:AAS61689.1 gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2415 YpsIP31758_2416 YpsIP31758_2416 YpsIP31758_2416 2719762 2722989 + putative intimin identified by similarity to SP:Q07591%3B match to protein family HMM PF02369 gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2416 YpsIP31758_2417 YpsIP31758_2417 YpsIP31758_2417 2723133 2723450 - conserved hypothetical protein identified by similarity to SP:P0A8M9%3B match to protein family HMM PF04363 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2417 YpsIP31758_2418 YpsIP31758_2418 YpsIP31758_2418 2723716 2723862 - hypothetical protein identified by glimmer%3B putative gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2418 YpsIP31758_2419 YpsIP31758_2419 YpsIP31758_2419 2723884 2724993 - NAD dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2419 YpsIP31758_2420 YpsIP31758_2420 sbcB sbcB 2725286 2726716 + exodeoxyribonuclease I identified by similarity to SP:P04995%3B match to protein family HMM PF00929 gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2420 YpsIP31758_2421 YpsIP31758_2421 YpsIP31758_2421 2728834 2730225 - amino acid permease family protein identified by match to protein family HMM PF00324 gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2421 YpsIP31758_2422 YpsIP31758_2422 YpsIP31758_2422 2730684 2731775 - alcohol dehydrogenase%2C iron-containing identified by match to protein family HMM PF00465 gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2422 YpsIP31758_2423 YpsIP31758_2423 rbsA7 rbsA7 2732061 2733602 + ribose ABC transporter%2C ATP-binding protein identified by similarity to SP:P36947%3B match to protein family HMM PF00005 gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2423 YpsIP31758_2424 YpsIP31758_2424 rbsC4 rbsC4 2733599 2734594 + ribose ABC transporter%2C permease protein identified by similarity to SP:P36948%3B match to protein family HMM PF02653 gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2424 YpsIP31758_2425 YpsIP31758_2425 YpsIP31758_2425 2734852 2735286 + hypothetical protein identified by glimmer%3B putative gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2425 YpsIP31758_2426 YpsIP31758_2426 YpsIP31758_2426 2735441 2736268 - NAD dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01370 gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2426 YpsIP31758_2427 YpsIP31758_2427 hisL hisL 2736644 2736691 + his operon leader peptide identified by match to protein family HMM PF08047 gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2427 YpsIP31758_2428 YpsIP31758_2428 hisG hisG 2736998 2737897 + ATP phosphoribosyltransferase identified by match to protein family HMM PF01634%3B match to protein family HMM PF08029%3B match to protein family HMM TIGR00070 gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2428 YpsIP31758_2429 YpsIP31758_2429 hisD hisD 2737901 2739232 + histidinol dehydrogenase identified by match to protein family HMM PF00815%3B match to protein family HMM TIGR00069 gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2429 YpsIP31758_2430 YpsIP31758_2430 hisC hisC 2739235 2740383 + histidinol-phosphate aminotransferase identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR01141 gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2430 YpsIP31758_2431 YpsIP31758_2431 hisB hisB 2740380 2741447 + histidine biosynthesis bifunctional protein HisB identified by similarity to SP:P06987%3B match to protein family HMM PF00475%3B match to protein family HMM TIGR01261%3B match to protein family HMM TIGR01656%3B match to protein family HMM TIGR01662 gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2431 YpsIP31758_2432 YpsIP31758_2432 hisH hisH 2741447 2742037 + imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR01855 gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2432 YpsIP31758_2433 YpsIP31758_2433 hisA hisA 2742043 2742780 + phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase identified by match to protein family HMM PF00977%3B match to protein family HMM PF01791%3B match to protein family HMM TIGR00007 gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2433 YpsIP31758_2434 YpsIP31758_2434 hisF hisF 2742762 2743538 + imidazoleglycerol phosphate synthase%2C cyclase subunit identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00735 gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2434 YpsIP31758_2435 YpsIP31758_2435 hisI hisI 2743532 2744146 + histidine biosynthesis bifunctional protein hisIE identified by similarity to SP:P06989%3B match to protein family HMM PF01502%3B match to protein family HMM PF01503 gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2435 YpsIP31758_2436 YpsIP31758_2436 gnd gnd 2744346 2745755 - 6-phosphogluconate dehydrogenase%2C decarboxylating identified by similarity to SP:P14062%3B match to protein family HMM PF00393%3B match to protein family HMM PF03446%3B match to protein family HMM TIGR00873 gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2436 YpsIP31758_2437 YpsIP31758_2437 YpsIP31758_2437 2746186 2747079 - putative UTP-glucose-1-phosphate uridylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01099 gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2437 YpsIP31758_2438 YpsIP31758_2438 galU galU 2747145 2748035 - UTP-glucose-1-phosphate uridylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01099 gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2438 YpsIP31758_2439 YpsIP31758_2439 YpsIP31758_2439 2748982 2750796 + siderophore biosynthesis protein%2C IucA/IucC family identified by match to protein family HMM PF04183 gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2439 YpsIP31758_2440 YpsIP31758_2440 fhuE fhuE 2751026 2753287 + FhuE receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783 gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2440 YpsIP31758_2441 YpsIP31758_2441 fepB fepB 2753377 2754456 + ferric enterobactin ABC transporter%2C ferric enterobactin-binding periplasmic protein FepB identified by match to protein family HMM PF01497 gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2441 YpsIP31758_2442 YpsIP31758_2442 fepD fepD 2754453 2755493 + ferric enterobactin ABC transporter%2C permease protein FepD identified by similarity to SP:P23876%3B match to protein family HMM PF01032 gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2442 YpsIP31758_2443 YpsIP31758_2443 fepG fepG 2755480 2756520 + ferric enterobactin ABC transporter%2C permease protein FepG identified by match to protein family HMM PF01032 gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2443 YpsIP31758_2444 YpsIP31758_2444 fepC fepC 2756547 2757365 + ferric enterobactin ABC transporter%2C ATP-binding protein FepC identified by similarity to SP:P23878%3B match to protein family HMM PF00005 gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2444 YpsIP31758_2445 YpsIP31758_2445 YpsIP31758_2445 2757439 2759283 - siderophore biosynthesis protein%2C IucA/IucC family identified by match to protein family HMM PF04183 gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2445 YpsIP31758_2446 YpsIP31758_2446 YpsIP31758_2446 2759280 2759858 - conserved domain protein gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2446 YpsIP31758_2447 YpsIP31758_2447 YpsIP31758_2447 2759858 2761156 - lysine N6-hydroxylase/L-ornithine N5-oxygenase family identified by similarity to GB:AAC00523.1 gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2447 YpsIP31758_2448 YpsIP31758_2448 YpsIP31758_2448 2761191 2762738 - pyridoxal-dependent decarboxylase domain protein identified by match to protein family HMM PF00282 gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2448 YpsIP31758_2449 YpsIP31758_2449 fhuF fhuF 2762889 2763668 - ferric iron reductase protein FhuF identified by similarity to SP:P39405%3B match to protein family HMM PF06276 gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2449 YpsIP31758_2450 YpsIP31758_2450 YpsIP31758_2450 2764110 2765696 + membrane protein TerC family/CBS domain protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF03471%3B match to protein family HMM PF03741 gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2450 YpsIP31758_2451 YpsIP31758_2451 YpsIP31758_2451 2765893 2767749 - AsmA protein identified by similarity to SP:P28249%3B match to protein family HMM PF05170 gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2451 YpsIP31758_2452 YpsIP31758_2452 dcd dcd 2767936 2768517 - deoxycytidine triphosphate deaminase identified by match to protein family HMM PF00692%3B match to protein family HMM TIGR02274 gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2452 YpsIP31758_2453 YpsIP31758_2453 udk udk 2768622 2769263 - uridine kinase identified by match to protein family HMM PF00485%3B match to protein family HMM TIGR00235 gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2453 YpsIP31758_2454 YpsIP31758_2454 YpsIP31758_2454 2769508 2770620 - putative ATPase Mrp identified by similarity to SP:P21590 gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2454 YpsIP31758_2455 YpsIP31758_2455 metG metG 2770885 2772912 + methionyl-tRNA synthetase identified by similarity to SP:P00959%3B match to protein family HMM PF01588%3B match to protein family HMM TIGR00398%3B match to protein family HMM TIGR00399 gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2455 YpsIP31758_2456 YpsIP31758_2456 YpsIP31758_2456 2773041 2773871 - putative membrane protein gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2456 YpsIP31758_2457 YpsIP31758_2457 YpsIP31758_2457 2774405 2775481 + conserved hypothetical protein gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2457 YpsIP31758_2458 YpsIP31758_2458 YpsIP31758_2458 2775499 2776752 + conserved hypothetical protein identified by similarity to GB:CAH20770.1 gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2458 YpsIP31758_2459 YpsIP31758_2459 YpsIP31758_2459 2777066 2778247 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2459 YpsIP31758_2460 YpsIP31758_2460 YpsIP31758_2460 2778489 2778896 + lrgA family protein identified by match to protein family HMM PF03788 gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2460 YpsIP31758_2461 YpsIP31758_2461 YpsIP31758_2461 2778893 2779588 + lrgB family protein identified by match to protein family HMM PF04172%3B match to protein family HMM TIGR00659 gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2461 YpsIP31758_2462 YpsIP31758_2462 cdd cdd 2779934 2780818 + cytidine deaminase identified by match to protein family HMM PF00383%3B match to protein family HMM PF08211%3B match to protein family HMM TIGR01355 gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2462 YpsIP31758_2463 YpsIP31758_2463 YpsIP31758_2463 2781174 2782871 + NAD-dependent malic enzyme identified by similarity to SP:P26616%3B match to protein family HMM PF00390%3B match to protein family HMM PF03949 gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2463 YpsIP31758_2464 YpsIP31758_2464 YpsIP31758_2464 2783152 2783889 + putative sanA protein identified by similarity to SP:P33017%3B match to protein family HMM PF02698 gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2464 YpsIP31758_2465 YpsIP31758_2465 mglC mglC 2784334 2785344 - galactose ABC transporter%2C permease protein identified by similarity to SP:P23200%3B match to protein family HMM PF02653 gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2465 YpsIP31758_2466 YpsIP31758_2466 mglA mglA 2785365 2786885 - galactose ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2466 YpsIP31758_2467 YpsIP31758_2467 mglB mglB 2787115 2788107 - galactose ABC transporter%2C periplasmic galactose-binding protein identified by similarity to SP:P23905%3B match to protein family HMM PF00532 gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2467 YpsIP31758_2468 YpsIP31758_2468 YpsIP31758_2468 2788528 2788701 - hypothetical protein identified by glimmer%3B putative gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2468 YpsIP31758_2469 YpsIP31758_2469 YpsIP31758_2469 2788855 2790021 - putative membrane protein identified by match to protein family HMM PF04171%3B match to protein family HMM PF04235 gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2469 YpsIP31758_2470 YpsIP31758_2470 folE folE 2790076 2790738 - GTP cyclohydrolase I identified by match to protein family HMM PF01227%3B match to protein family HMM TIGR00063 gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2470 YpsIP31758_2471 YpsIP31758_2471 YpsIP31758_2471 2790922 2792073 - transporter%2C major facilitator family identified by match to protein family HMM PF06779%3B match to protein family HMM PF07690 gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2471 YpsIP31758_2472 YpsIP31758_2472 YpsIP31758_2472 2792209 2793078 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2472 YpsIP31758_2473 YpsIP31758_2473 YpsIP31758_2473 2793354 2794493 + S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02818 gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2473 YpsIP31758_2474 YpsIP31758_2474 fghA fghA 2794514 2795356 + S-formylglutathione hydrolase identified by match to protein family HMM PF00756%3B match to protein family HMM TIGR02821 gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2474 YpsIP31758_2475 YpsIP31758_2475 YpsIP31758_2475 2795434 2795586 - hypothetical protein identified by glimmer%3B putative gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2475 YpsIP31758_2476 YpsIP31758_2476 YpsIP31758_2476 2795909 2798269 + putative membrane protein gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2476 YpsIP31758_2477 YpsIP31758_2477 YpsIP31758_2477 2798271 2799533 + efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2477 YpsIP31758_2478 YpsIP31758_2478 YpsIP31758_2478 2799535 2800203 + ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2478 YpsIP31758_2479 YpsIP31758_2479 YpsIP31758_2479 2800213 2801523 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2479 YpsIP31758_2480 YpsIP31758_2480 moeA moeA 2802058 2803332 + molybdopterin biosynthesis protein identified by similarity to SP:P12281%3B match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177 gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2480 YpsIP31758_2481 YpsIP31758_2481 moeB moeB 2803334 2804104 + molybdopterin synthase sulfurylase MoeB identified by match to protein family HMM PF00899%3B match to protein family HMM PF05237%3B match to protein family HMM TIGR02355 gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2481 YpsIP31758_2482 YpsIP31758_2482 YpsIP31758_2482 2804176 2804823 - hypothetical protein identified by glimmer%3B putative gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2482 YpsIP31758_2483 YpsIP31758_2483 YpsIP31758_2483 2805041 2806636 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2483 YpsIP31758_2484 YpsIP31758_2484 YpsIP31758_2484 2807319 2807942 + conserved hypothetical protein identified by similarity to SP:P57120 gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2484 YpsIP31758_2485 YpsIP31758_2485 YpsIP31758_2485 2808154 2809521 - ImpA domain protein identified by match to protein family HMM PF06812 gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2485 YpsIP31758_2486 YpsIP31758_2486 YpsIP31758_2486 2809545 2809997 - conserved hypothetical protein identified by match to protein family HMM PF07025%3B match to protein family HMM TIGR03357 gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2486 YpsIP31758_2487 YpsIP31758_2487 YpsIP31758_2487 2809997 2810578 - conserved hypothetical protein identified by similarity to GB:CAE15597.1%3B match to protein family HMM TIGR03352 gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2487 YpsIP31758_2488 YpsIP31758_2488 YpsIP31758_2488 2810553 2811638 - conserved hypothetical protein identified by match to protein family HMM PF06996%3B match to protein family HMM TIGR03347 gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2488 YpsIP31758_2489 YpsIP31758_2489 YpsIP31758_2489 2811602 2813365 - conserved hypothetical protein identified by similarity to GB:CAC90308.1%3B match to protein family HMM PF05947%3B match to protein family HMM TIGR03359 gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2489 YpsIP31758_2490 YpsIP31758_2490 YpsIP31758_2490 2813457 2813915 - hypothetical protein identified by glimmer%3B putative gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2490 YpsIP31758_2491 YpsIP31758_2491 YpsIP31758_2491 2813918 2815033 - conserved domain protein identified by match to protein family HMM PF05488%3B match to protein family HMM TIGR03034 gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2491 YpsIP31758_2492 YpsIP31758_2492 YpsIP31758_2492 2815051 2816652 - ImpA domain protein identified by match to protein family HMM PF06812%3B match to protein family HMM TIGR03362 gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2492 YpsIP31758_2493 YpsIP31758_2493 YpsIP31758_2493 2816697 2817518 - hypothetical protein identified by glimmer%3B putative gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2493 YpsIP31758_2494 YpsIP31758_2494 YpsIP31758_2494 2817531 2820572 - hypothetical protein identified by glimmer%3B putative gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2494 YpsIP31758_2495 YpsIP31758_2495 YpsIP31758_2495 2820654 2824076 - conserved hypothetical protein identified by match to protein family HMM PF06744%3B match to protein family HMM PF06761 gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2495 YpsIP31758_2496 YpsIP31758_2496 YpsIP31758_2496 2824073 2825305 - conserved hypothetical protein identified by similarity to GB:AAZ59399.1 gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2496 YpsIP31758_2497 YpsIP31758_2497 YpsIP31758_2497 2826135 2826930 + IS630 family transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2497 YpsIP31758_2498 YpsIP31758_2498 YpsIP31758_2498 2827251 2827418 - hypothetical protein identified by glimmer%3B putative gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2498 YpsIP31758_2499 YpsIP31758_2499 YpsIP31758_2499 2828017 2828238 + hypothetical protein identified by glimmer%3B putative gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2499 YpsIP31758_2500 YpsIP31758_2500 YpsIP31758_2500 2828245 2829738 - M23 peptidase domain protein identified by match to protein family HMM PF01551 gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2500 YpsIP31758_2501 YpsIP31758_2501 YpsIP31758_2501 2829754 2830014 - conserved hypothetical protein identified by similarity to GB:ABB11099.1 gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2501 YpsIP31758_2502 YpsIP31758_2502 YpsIP31758_2502 2830168 2830941 - hypothetical protein identified by glimmer%3B putative gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2502 YpsIP31758_2503 YpsIP31758_2503 YpsIP31758_2503 2830938 2833238 - M23 peptidase domain protein identified by match to protein family HMM PF01551 gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2503 YpsIP31758_2504 YpsIP31758_2504 YpsIP31758_2504 2833254 2835602 - Rhs element Vgr protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2504 YpsIP31758_2505 YpsIP31758_2505 YpsIP31758_2505 2835605 2838247 - ATPase%2C AAA family identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR03345 gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2505 YpsIP31758_2506 YpsIP31758_2506 YpsIP31758_2506 2838541 2839032 - conserved hypothetical protein identified by similarity to GB:AAN81836.1%3B match to protein family HMM PF05638%3B match to protein family HMM TIGR03344 gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2506 YpsIP31758_2507 YpsIP31758_2507 YpsIP31758_2507 2839036 2840772 - OmpA domain protein identified by match to protein family HMM PF00691 gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2507 YpsIP31758_2508 YpsIP31758_2508 YpsIP31758_2508 2840772 2841458 - conserved hypothetical protein identified by similarity to GB:AAN81833.1%3B match to protein family HMM TIGR03349 gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2508 YpsIP31758_2509 YpsIP31758_2509 YpsIP31758_2509 2841455 2842807 - conserved hypothetical protein identified by match to protein family HMM PF05936%3B match to protein family HMM TIGR03353 gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2509 YpsIP31758_2510 YpsIP31758_2510 YpsIP31758_2510 2842819 2844369 - conserved hypothetical protein identified by similarity to GB:AAN81831.1%3B match to protein family HMM PF05943%3B match to protein family HMM TIGR03355 gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2510 YpsIP31758_2511 YpsIP31758_2511 YpsIP31758_2511 2844412 2844912 - conserved hypothetical protein identified by match to protein family HMM PF05591%3B match to protein family HMM TIGR03358 gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2511 YpsIP31758_2512 YpsIP31758_2512 YpsIP31758_2512 2845901 2846749 - putative acyltransferase gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2512 YpsIP31758_2513 YpsIP31758_2513 YpsIP31758_2513 2846848 2847096 - putative acyl carrier protein gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2513 YpsIP31758_2514 YpsIP31758_2514 YpsIP31758_2514 2847134 2847574 - conserved hypothetical protein identified by similarity to GB:ABA50536.1 gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2514 YpsIP31758_2515 YpsIP31758_2515 YpsIP31758_2515 2847661 2848449 - conserved hypothetical protein identified by similarity to GB:CAH20717.1 gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2515 YpsIP31758_2516 YpsIP31758_2516 YpsIP31758_2516 2848452 2849204 - enoyl-CoA hydratase/isomerase family protein identified by match to protein family HMM PF00378 gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2516 YpsIP31758_2517 YpsIP31758_2517 YpsIP31758_2517 2849206 2849925 - enoyl-CoA hydratase/isomerase family protein identified by match to protein family HMM PF00378 gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2517 YpsIP31758_2518 YpsIP31758_2518 YpsIP31758_2518 2849918 2851156 - putative hydroxymethylglutaryl-coenzyme A synthase identified by match to protein family HMM PF01154 gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2518 YpsIP31758_2519 YpsIP31758_2519 YpsIP31758_2519 2851172 2851909 - short-chain dehydrogenase/reductase family protein identified by similarity to SP:P25716%3B match to protein family HMM PF00106 gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2519 YpsIP31758_2520 YpsIP31758_2520 YpsIP31758_2520 2851911 2853194 - beta-ketoacyl synthase family protein identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801 gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2520 YpsIP31758_2521 YpsIP31758_2521 YpsIP31758_2521 2853184 2853708 - thioester dehydratase family protein identified by similarity to SP:P0A6Q6%3B match to protein family HMM PF07977 gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2521 YpsIP31758_2522 YpsIP31758_2522 YpsIP31758_2522 2853972 2854292 - conserved hypothetical protein identified by similarity to RF:YP_260094.1 gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2522 YpsIP31758_2523 YpsIP31758_2523 YpsIP31758_2523 2854921 2855667 + oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106 gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2523 YpsIP31758_2524 YpsIP31758_2524 YpsIP31758_2524 2855821 2858025 + FAD binding domain protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF01565 pseudogene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2524 YpsIP31758_2525 YpsIP31758_2525 YpsIP31758_2525 2858362 2860163 - mitogenic toxin family protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2525 YpsIP31758_2526 YpsIP31758_2526 YpsIP31758_2526 2860527 2861053 - IS1327%2C transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2526 YpsIP31758_2527 YpsIP31758_2527 YpsIP31758_2527 2861028 2861141 - hypothetical protein identified by glimmer%3B putative gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2527 YpsIP31758_2528 YpsIP31758_2528 YpsIP31758_2528 2861374 2861511 - hypothetical protein identified by glimmer%3B putative gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2528 YpsIP31758_2529 YpsIP31758_2529 tusE tusE 2861561 2861890 + sulfurtransferase TusE identified by similarity to SP:P0AB19%3B match to protein family HMM PF04358%3B match to protein family HMM TIGR03342 gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2529 YpsIP31758_2530 YpsIP31758_2530 YpsIP31758_2530 2861942 2862220 - acylphosphatase identified by match to protein family HMM PF00708 gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2530 YpsIP31758_2531 YpsIP31758_2531 YpsIP31758_2531 2862314 2863504 + PUA domain protein identified by similarity to SP:P75876 gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2531 YpsIP31758_2532 YpsIP31758_2532 hspQ hspQ 2863565 2863882 + heat shock protein HspQ identified by similarity to SP:P0AB23%3B match to protein family HMM TIGR02097 gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2532 YpsIP31758_2533 YpsIP31758_2533 YpsIP31758_2533 2863991 2864407 - CoA binding domain protein identified by match to protein family HMM PF02629 gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2533 YpsIP31758_2534 YpsIP31758_2534 YpsIP31758_2534 2864723 2865403 + conserved hypothetical protein identified by similarity to SP:P0A8X7 gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2534 YpsIP31758_2535 YpsIP31758_2535 mgsA mgsA 2865582 2866046 + methylglyoxal synthase identified by similarity to SP:P45120%3B match to protein family HMM PF02142%3B match to protein family HMM TIGR00160 gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2535 YpsIP31758_2536 YpsIP31758_2536 helD helD 2866107 2868161 - helicase IV identified by similarity to SP:P15038%3B match to protein family HMM PF00580 gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2536 YpsIP31758_2537 YpsIP31758_2537 YpsIP31758_2537 2868355 2868801 + conserved hypothetical protein identified by match to protein family HMM PF03733 gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2537 YpsIP31758_2538 YpsIP31758_2538 yccS yccS 2868831 2870969 + inner membrane protein YccS identified by similarity to SP:P75870%3B match to protein family HMM PF05976%3B match to protein family HMM TIGR01666%3B match to protein family HMM TIGR01667 gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2538 YpsIP31758_2539 YpsIP31758_2539 tfoX tfoX 2871071 2871706 - DNA transformation protein tfoX identified by similarity to SP:P43779%3B match to protein family HMM PF04993%3B match to protein family HMM PF04994 gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2539 YpsIP31758_2540 YpsIP31758_2540 sulA sulA 2871935 2872441 + cell division inhibitor SulA identified by similarity to SP:P08846%3B match to protein family HMM PF03846 gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2540 YpsIP31758_2541 YpsIP31758_2541 YpsIP31758_2541 2872676 2873884 - IS10%2C transposase identified by similarity to GB:AAB28848.1%3B match to protein family HMM PF01609 gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2541 YpsIP31758_2542 YpsIP31758_2542 ompA ompA 2874125 2875198 + outer membrane protein A identified by similarity to SP:P02936%3B match to protein family HMM PF00691%3B match to protein family HMM PF01389 gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2542 YpsIP31758_2543 YpsIP31758_2543 YpsIP31758_2543 2875337 2875846 + IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2543 YpsIP31758_2544 YpsIP31758_2544 YpsIP31758_2544 2876015 2876470 - conserved hypothetical protein identified by similarity to SP:Q8FJ81%3B match to protein family HMM PF06303 gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2544 YpsIP31758_2545 YpsIP31758_2545 YpsIP31758_2545 2876681 2878432 + conserved hypothetical protein identified by similarity to RF:YP_049849.1 gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2545 YpsIP31758_2546 YpsIP31758_2546 fabA fabA 2878501 2879019 + beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA identified by match to protein family HMM PF07977%3B match to protein family HMM TIGR01749 gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2546 YpsIP31758_2547 YpsIP31758_2547 YpsIP31758_2547 2879719 2880993 + beta-ketoacyl synthase family protein identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR03150 gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2547 YpsIP31758_2548 YpsIP31758_2548 YpsIP31758_2548 2881492 2882070 - putative lipoprotein identified by match to protein family HMM PF03886 gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2548 YpsIP31758_2549 YpsIP31758_2549 pqiB pqiB 2882067 2883719 - paraquat-inducible protein B identified by match to protein family HMM PF02470 gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2549 YpsIP31758_2550 YpsIP31758_2550 pqiA pqiA 2883706 2884992 - paraquat-inducible protein A identified by similarity to SP:P43670%3B match to protein family HMM PF04403%3B match to protein family HMM TIGR00155 gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2550 YpsIP31758_2551 YpsIP31758_2551 uup uup 2885121 2887034 - ABC transporter%2C ATP-binding protein Uup identified by similarity to SP:P43672%3B match to protein family HMM PF00005%3B match to protein family HMM PF02463 gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2551 YpsIP31758_2552 YpsIP31758_2552 YpsIP31758_2552 2887040 2889160 - putative methyltransferase identified by match to protein family HMM PF01170%3B match to protein family HMM PF02926%3B match to protein family HMM PF03602 gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2552 YpsIP31758_2553 YpsIP31758_2553 YpsIP31758_2553 2889260 2890372 + MOSC/iron-sulfur cluster binding domain protein identified by match to protein family HMM PF00111%3B match to protein family HMM PF03473%3B match to protein family HMM PF03476 gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2553 YpsIP31758_2554 YpsIP31758_2554 YpsIP31758_2554 2890398 2890949 - conserved hypothetical protein identified by match to protein family HMM PF07126 gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2554 YpsIP31758_2555 YpsIP31758_2555 pyrD pyrD 2891132 2892142 - dihydroorotate oxidase identified by match to protein family HMM PF01180%3B match to protein family HMM TIGR01036 gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2555 YpsIP31758_2556 YpsIP31758_2556 pepN pepN 2892805 2895420 - aminopeptidase N identified by similarity to SP:P04825%3B match to protein family HMM PF01433%3B match to protein family HMM TIGR02414 gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2556 YpsIP31758_2557 YpsIP31758_2557 pncB pncB 2896134 2897339 + nicotinate phosphoribosyltransferase identified by match to protein family HMM PF04095%3B match to protein family HMM TIGR01514 gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2557 YpsIP31758_2558 YpsIP31758_2558 asnS asnS 2897838 2899238 + asparaginyl-tRNA synthetase identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00457 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2558 YpsIP31758_2559 YpsIP31758_2559 ompF ompF 2899536 2900618 + outer membrane protein F identified by similarity to SP:P77747%3B match to protein family HMM PF00267 gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2559 YpsIP31758_2560 YpsIP31758_2560 YpsIP31758_2560 2900875 2902065 + aspartate aminotransferase identified by similarity to PDB:1ART%3B match to protein family HMM PF00155 gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2560 YpsIP31758_2561 YpsIP31758_2561 YpsIP31758_2561 2902489 2903136 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2561 YpsIP31758_2562 YpsIP31758_2562 YpsIP31758_2562 2903197 2903745 - conserved hypothetical protein identified by match to protein family HMM PF05951 gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2562 YpsIP31758_2563 YpsIP31758_2563 YpsIP31758_2563 2903969 2905678 - conserved hypothetical protein identified by match to protein family HMM PF01471 gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2563 YpsIP31758_2564 YpsIP31758_2564 YpsIP31758_2564 2905633 2905749 + hypothetical protein identified by glimmer%3B putative gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2564 YpsIP31758_2565 YpsIP31758_2565 mukB mukB 2906073 2910530 - chromosome partition protein MukB identified by similarity to SP:P22523%3B match to protein family HMM PF04310 gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2565 YpsIP31758_2566 YpsIP31758_2566 mukE mukE 2910527 2911255 - chromosome partition protein MukE identified by similarity to SP:P22524%3B match to protein family HMM PF04288 gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2566 YpsIP31758_2567 YpsIP31758_2567 mukF mukF 2911236 2912558 - chromosome partition protein mukF identified by similarity to SP:P60293%3B match to protein family HMM PF03882 gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2567 YpsIP31758_2568 YpsIP31758_2568 YpsIP31758_2568 2912555 2913340 - S-adenosylmethionine-dependent methyltransferase SmtA-like protein identified by similarity to SP:P36566 gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2568 YpsIP31758_2569 YpsIP31758_2569 YpsIP31758_2569 2913550 2913738 + hypothetical protein identified by glimmer%3B putative gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2569 YpsIP31758_2570 YpsIP31758_2570 YpsIP31758_2570 2914132 2915025 - conserved hypothetical protein gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2570 YpsIP31758_2571 YpsIP31758_2571 kdsB kdsB 2915388 2916140 - 3-deoxy-D-manno-octulosonate cytidylyltransferase identified by match to protein family HMM PF02348%3B match to protein family HMM TIGR00466 gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2571 YpsIP31758_2572 YpsIP31758_2572 YpsIP31758_2572 2916137 2916319 - conserved hypothetical protein identified by similarity to SP:P0AB00%3B match to protein family HMM PF03966 gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2572 YpsIP31758_2573 YpsIP31758_2573 YpsIP31758_2573 2916469 2916582 - hypothetical protein identified by glimmer%3B putative gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2573 YpsIP31758_2574 YpsIP31758_2574 YpsIP31758_2574 2916867 2917076 - cold shock DNA-binding domain protein identified by similarity to GB:AAN79187.1%3B match to protein family HMM PF00313 gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2574 YpsIP31758_2575 YpsIP31758_2575 YpsIP31758_2575 2917795 2919231 + conserved hypothetical protein identified by match to protein family HMM PF07063 gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2575 YpsIP31758_2576 YpsIP31758_2576 lpxK lpxK 2919239 2920225 - tetraacyldisaccharide 4'-kinase identified by match to protein family HMM PF02606%3B match to protein family HMM TIGR00682 gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2576 YpsIP31758_2577 YpsIP31758_2577 msbA msbA 2920222 2921970 - lipid A export permease/ATP-binding protein MsbA identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR02203 gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2577 YpsIP31758_2578 YpsIP31758_2578 comEC comEC 2922006 2924297 - DNA internalization-related competence protein ComEC/Rec2 identified by match to protein family HMM PF00753%3B match to protein family HMM PF03772%3B match to protein family HMM TIGR00360%3B match to protein family HMM TIGR00361 gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2578 YpsIP31758_2579 YpsIP31758_2579 ihfB ihfB 2924859 2925143 - integration host factor%2C beta subunit identified by match to protein family HMM PF00216%3B match to protein family HMM TIGR00988 gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2579 YpsIP31758_2580 YpsIP31758_2580 rpsA rpsA 2925204 2926877 - ribosomal protein S1 identified by similarity to SP:P02349%3B match to protein family HMM PF00575%3B match to protein family HMM TIGR00717 gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2580 YpsIP31758_2581 YpsIP31758_2581 cmk cmk 2927051 2927743 - cytidylate kinase identified by match to protein family HMM PF02224%3B match to protein family HMM TIGR00017 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2581 YpsIP31758_2582 YpsIP31758_2582 aroA aroA 2928056 2929342 - 3-phosphoshikimate 1-carboxyvinyltransferase identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01356 gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2582 YpsIP31758_2583 YpsIP31758_2583 serC serC 2929520 2930605 - phosphoserine aminotransferase identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR01364 gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2583 YpsIP31758_2584 YpsIP31758_2584 YpsIP31758_2584 2930972 2932819 - hypothetical protein identified by glimmer%3B putative gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2584 YpsIP31758_2585 YpsIP31758_2585 YpsIP31758_2585 2932840 2933934 - putative haemagglutinin/invasin identified by match to protein family HMM PF05662 gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2585 YpsIP31758_2586 YpsIP31758_2586 ansB ansB 2934253 2935290 - L-asparaginase II identified by similarity to SP:P00805%3B match to protein family HMM PF00710%3B match to protein family HMM TIGR00520 gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2586 YpsIP31758_2587 YpsIP31758_2587 YpsIP31758_2587 2935439 2937205 + conserved hypothetical protein identified by similarity to GB:CAG75494.1%3B match to protein family HMM PF02624%3B match to protein family HMM TIGR00702 gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2587 YpsIP31758_2588 YpsIP31758_2588 YpsIP31758_2588 2937902 2938759 + putative formate transporter FocA identified by similarity to SP:P0AC23%3B match to protein family HMM PF01226%3B match to protein family HMM TIGR00790 gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2588 YpsIP31758_2589 YpsIP31758_2589 pflB pflB 2938815 2941097 + formate acetyltransferase identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901%3B match to protein family HMM TIGR01255 gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2589 YpsIP31758_2590 YpsIP31758_2590 YpsIP31758_2590 2941215 2941889 - LPS glycosyltransferase family protein identified by match to protein family HMM PF01755 gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2590 YpsIP31758_2591 YpsIP31758_2591 pflA pflA 2942876 2943610 + pyruvate formate-lyase 1-activating enzyme identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR02493 gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2591 YpsIP31758_2592 YpsIP31758_2592 YpsIP31758_2592 2943764 2944912 - transporter%2C major facilitator family ycaD%3B identified by match to protein family HMM PF07690 gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2592 YpsIP31758_2593 YpsIP31758_2593 serS serS 2945143 2946435 - seryl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414 gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2593 YpsIP31758_2594 YpsIP31758_2594 rarA rarA 2946677 2948020 - replication/recombination-associated protein RarA identified by similarity to SP:P0AAZ4%3B match to protein family HMM PF00004 gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2594 YpsIP31758_2595 YpsIP31758_2595 lolA lolA 2948031 2948639 - outer membrane lipoprotein carrier protein LolA identified by match to protein family HMM PF03548%3B match to protein family HMM TIGR00547 gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2595 YpsIP31758_2596 YpsIP31758_2596 ftsK ftsK 2948829 2952761 - DNA translocase FtsK identified by similarity to SP:P46889%3B match to protein family HMM PF01580 gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2596 YpsIP31758_2597 YpsIP31758_2597 lrp lrp 2952884 2953378 - leucine-responsive regulatory protein identified by similarity to SP:P37424%3B match to protein family HMM PF01037 gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2597 YpsIP31758_2598 YpsIP31758_2598 trxB trxB 2954146 2955108 + thioredoxin-disulfide reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01292 gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2598 YpsIP31758_2599 YpsIP31758_2599 YpsIP31758_2599 2955213 2955350 - hypothetical protein identified by glimmer%3B putative gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2599 YpsIP31758_2600 YpsIP31758_2600 cydD cydD 2955567 2957333 + ABC transporter%2C permease/ATP-binding protein CydD identified by similarity to SP:P29018%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR02857 gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2600 YpsIP31758_2601 YpsIP31758_2601 cydC cydC 2957336 2959060 + ABC transporter%2C permease/ATP-binding protein CydC identified by similarity to SP:P23886%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02868 gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2601 YpsIP31758_2602 YpsIP31758_2602 YpsIP31758_2602 2959138 2959251 - hypothetical protein identified by glimmer%3B putative gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2602 YpsIP31758_2603 YpsIP31758_2603 aat aat 2959279 2959989 + leucyl/phenylalanyl-tRNA--protein transferase identified by match to protein family HMM PF03588%3B match to protein family HMM TIGR00667 gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2603 YpsIP31758_2604 YpsIP31758_2604 infA infA 2960155 2960373 + translation initiation factor IF-1 identified by match to protein family HMM PF00575%3B match to protein family HMM PF01176%3B match to protein family HMM TIGR00008 gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2604 YpsIP31758_2605 YpsIP31758_2605 YpsIP31758_2605 2960632 2960784 + hypothetical protein identified by glimmer%3B putative gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2605 YpsIP31758_2606 YpsIP31758_2606 clpA clpA 2960786 2963062 - ATP-dependent Clp protease%2C ATP-binding subunit ClpA identified by similarity to SP:P0ABH9%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02639 gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2606 YpsIP31758_2607 YpsIP31758_2607 clpS clpS 2963088 2963408 - ATP-dependent Clp protease adaptor protein ClpS identified by match to protein family HMM PF02617 gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2607 YpsIP31758_2608 YpsIP31758_2608 YpsIP31758_2608 2963377 2963583 - hypothetical protein identified by glimmer%3B putative gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2608 YpsIP31758_2609 YpsIP31758_2609 cspD cspD 2963769 2964032 + cold shock domain protein CspD identified by similarity to SP:P0A968%3B match to protein family HMM PF00313%3B match to protein family HMM TIGR02381 gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2609 YpsIP31758_2610 YpsIP31758_2610 macB macB 2964330 2966279 - macrolide-specific ABC-type efflux carrier protein MacB identified by similarity to SP:P75831%3B match to protein family HMM PF00005%3B match to protein family HMM PF02687 gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2610 YpsIP31758_2611 YpsIP31758_2611 macA macA 2966279 2967391 - macrolide-specific efflux protein MacA identified by similarity to SP:P75830%3B match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2611 YpsIP31758_2612 YpsIP31758_2612 YpsIP31758_2612 2967420 2967596 + hypothetical protein identified by glimmer%3B putative gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2612 YpsIP31758_2613 YpsIP31758_2613 YpsIP31758_2613 2967624 2968571 + conserved hypothetical protein identified by similarity to SP:P75829%3B match to protein family HMM PF04393 gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2613 YpsIP31758_2614 YpsIP31758_2614 YpsIP31758_2614 2968708 2970375 - conserved hypothetical protein identified by similarity to GB:CAG75560.1 gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2614 YpsIP31758_2615 YpsIP31758_2615 YpsIP31758_2615 2970543 2970665 + hypothetical protein identified by glimmer%3B putative gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2615 YpsIP31758_2616 YpsIP31758_2616 YpsIP31758_2616 2970728 2971624 + putative membrane protein identified by match to protein family HMM PF03956 gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2616 YpsIP31758_2617 YpsIP31758_2617 hcp hcp 2971827 2973479 + hydroxylamine reductase identified by similarity to SP:P75825%3B match to protein family HMM PF03063%3B match to protein family HMM TIGR01703 gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2617 YpsIP31758_2618 YpsIP31758_2618 hcr hcr 2973593 2974615 + NADH oxidoreductase Hcr identified by similarity to SP:P75824%3B match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2618 YpsIP31758_2619 YpsIP31758_2619 poxB poxB 2974759 2976480 + pyruvate dehydrogenase (cytochrome) identified by similarity to SP:P07003%3B match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776 gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2619 YpsIP31758_2620 YpsIP31758_2620 ltaE ltaE 2976923 2977942 + low-specificity L-threonine aldolase identified by similarity to SP:P75823%3B match to protein family HMM PF01212 gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2620 YpsIP31758_2621 YpsIP31758_2621 YpsIP31758_2621 2977939 2979429 + NAD dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF05368 gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2621 YpsIP31758_2622 YpsIP31758_2622 YpsIP31758_2622 2979529 2980536 + NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2622 YpsIP31758_2623 YpsIP31758_2623 YpsIP31758_2623 2980633 2981208 + putative lipoprotein identified by similarity to GB:CAH20620.1 gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2623 YpsIP31758_2624 YpsIP31758_2624 YpsIP31758_2624 2981378 2981938 + putative chorismate mutase identified by match to protein family HMM PF01817%3B match to protein family HMM TIGR01806 gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2624 YpsIP31758_2625 YpsIP31758_2625 artP artP 2982233 2982961 + arginine ABC transporter%2C ATP-binding protein identified by similarity to SP:P0AAF6%3B match to protein family HMM PF00005 gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2625 YpsIP31758_2626 YpsIP31758_2626 artI artI 2982982 2983713 + arginine ABC transporter%2C periplasmic substrate-binding protein ArtI identified by similarity to SP:P30859%3B match to protein family HMM PF00497%3B match to protein family HMM TIGR01096 gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2626 YpsIP31758_2627 YpsIP31758_2627 artQ artQ 2983725 2984441 + arginine ABC transporter%2C permease protein ArtQ identified by similarity to SP:P0AE36%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2627 YpsIP31758_2628 YpsIP31758_2628 artM artM 2984441 2985109 + arginine ABC transporter%2C permease protein ArtM identified by similarity to SP:P0AE33%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2628 YpsIP31758_2629 YpsIP31758_2629 YpsIP31758_2629 2985125 2985274 + hypothetical protein identified by glimmer%3B putative gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2629 YpsIP31758_2630 YpsIP31758_2630 YpsIP31758_2630 2985299 2986144 - integral membrane protein identified by match to protein family HMM PF00892 gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2630 YpsIP31758_2631 YpsIP31758_2631 YpsIP31758_2631 2986141 2987469 - conserved hypothetical protein identified by similarity to GB:AAG08220.1 gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2631 YpsIP31758_2632 YpsIP31758_2632 YpsIP31758_2632 2987462 2988259 - conserved hypothetical protein gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2632 YpsIP31758_2633 YpsIP31758_2633 YpsIP31758_2633 2988247 2989032 - iron chelate ABC transporter (FeCT) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2633 YpsIP31758_2634 YpsIP31758_2634 YpsIP31758_2634 2989029 2990087 - iron chelate ABC transporter (FeCT) family%2C permease protein identified by match to protein family HMM PF01032 gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2634 YpsIP31758_2635 YpsIP31758_2635 YpsIP31758_2635 2990087 2991178 - iron chelate ABC transporter (FeCT) family%2C periplasmic iron/siderophore-binding protein identified by match to protein family HMM PF01497 gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2635 YpsIP31758_2636 YpsIP31758_2636 YpsIP31758_2636 2991591 2992517 - SPFH/band 7 family protein identified by match to protein family HMM PF01145 gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2636 YpsIP31758_2637 YpsIP31758_2637 YpsIP31758_2637 2992858 2993004 - hypothetical protein identified by glimmer%3B putative gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2637 YpsIP31758_2638 YpsIP31758_2638 YpsIP31758_2638 2993051 2993167 - hypothetical protein identified by glimmer%3B putative gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2638 YpsIP31758_2639 YpsIP31758_2639 artJ artJ 2993286 2994017 + arginine ABC transporter%2C periplasmic substrate-binding protein ArtJ identified by similarity to SP:P30860%3B match to protein family HMM PF00497%3B match to protein family HMM TIGR01096 gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2639 YpsIP31758_2640 YpsIP31758_2640 rumB rumB 2994144 2995274 - 23S rRNA (uracil-5-)-methyltransferase RumB identified by match to protein family HMM PF05958%3B match to protein family HMM TIGR02085 gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2640 YpsIP31758_2641 YpsIP31758_2641 YpsIP31758_2641 2995358 2995822 - putative membrane protein gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2641 YpsIP31758_2642 YpsIP31758_2642 potI potI 2995947 2996792 - putrescine ABC transporter%2C permease protein identified by similarity to SP:P31136%3B match to protein family HMM PF00528 gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2642 YpsIP31758_2643 YpsIP31758_2643 potH potH 2996789 2997754 - putrescine ABC transporter%2C permease protein identified by similarity to SP:P31135%3B match to protein family HMM PF00528 gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2643 YpsIP31758_2644 YpsIP31758_2644 potG potG 2997779 2998912 - putrescine ABC transporter%2C ATP-binding protein identified by similarity to SP:P31134%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01187 gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2644 YpsIP31758_2645 YpsIP31758_2645 potF potF 2999083 3000192 - putrescine ABC transporter%2C periplasmic putrescine binding protein identified by similarity to SP:P31133%3B match to protein family HMM PF01547 gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2645 YpsIP31758_2646 YpsIP31758_2646 YpsIP31758_2646 3000724 3001209 - conserved hypothetical protein identified by similarity to GB:CAG75578.1 gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2646 YpsIP31758_2647 YpsIP31758_2647 YpsIP31758_2647 3001351 3001665 - putative membrane protein identified by match to protein family HMM PF07214 gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2647 YpsIP31758_2648 YpsIP31758_2648 grxA grxA 3002128 3002391 + glutaredoxin GrxA identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR02183 gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2648 YpsIP31758_2649 YpsIP31758_2649 YpsIP31758_2649 3002801 3004489 + putative transport protein identified by match to protein family HMM PF02080%3B match to protein family HMM PF06826%3B match to protein family HMM TIGR01625 gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2649 YpsIP31758_2650 YpsIP31758_2650 YpsIP31758_2650 3004822 3005637 + putative membrane protein gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2650 YpsIP31758_2651 YpsIP31758_2651 YpsIP31758_2651 3005637 3006242 + PAP2 family protein identified by match to protein family HMM PF01569 gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2651 YpsIP31758_2652 YpsIP31758_2652 deoC2 deoC2 3006500 3007171 + deoxyribose-phosphate aldolase identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126 gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2652 YpsIP31758_2653 YpsIP31758_2653 YpsIP31758_2653 3007401 3008165 + transcriptional regulator%2C DeoR family identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2653 YpsIP31758_2654 YpsIP31758_2654 YpsIP31758_2654 3008956 3009072 - hypothetical protein identified by glimmer%3B putative gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2654 YpsIP31758_2655 YpsIP31758_2655 YpsIP31758_2655 3009086 3009199 + hypothetical protein identified by glimmer%3B putative gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2655 YpsIP31758_2656 YpsIP31758_2656 sdaC sdaC 3009265 3010566 + serine transporter identified by similarity to SP:P0AAD6%3B match to protein family HMM PF01490%3B match to protein family HMM TIGR00814 gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2656 YpsIP31758_2657 YpsIP31758_2657 YpsIP31758_2657 3010579 3010695 - hypothetical protein identified by glimmer%3B putative gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2657 YpsIP31758_2658 YpsIP31758_2658 YpsIP31758_2658 3010667 3010804 - hypothetical protein identified by glimmer%3B putative gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2658 YpsIP31758_2659 YpsIP31758_2659 YpsIP31758_2659 3011023 3012225 - D-alanyl-D-alanine carboxypeptidase identified by match to protein family HMM PF00768%3B match to protein family HMM PF07943 gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2659 YpsIP31758_2660 YpsIP31758_2660 YpsIP31758_2660 3012560 3013231 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2660 YpsIP31758_2661 YpsIP31758_2661 YpsIP31758_2661 3013228 3014214 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2661 YpsIP31758_2662 YpsIP31758_2662 YpsIP31758_2662 3014211 3015035 - lipoprotein%2C NLPA family identified by match to protein family HMM PF03180 gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2662 YpsIP31758_2663 YpsIP31758_2663 YpsIP31758_2663 3015263 3016330 - oxidoreductase%2C 2OG-Fe(II) oxygenase family identified by match to protein family HMM PF03171 gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2663 YpsIP31758_2664 YpsIP31758_2664 YpsIP31758_2664 3016817 3017479 + HAD-superfamily hydrolase%2C subfamily IB%2C TIGR01490 identified by match to protein family HMM TIGR01488%3B match to protein family HMM TIGR01490 gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2664 YpsIP31758_2665 YpsIP31758_2665 YpsIP31758_2665 3017684 3018304 + putative glutathione S-transferase identified by match to protein family HMM PF02798 gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2665 YpsIP31758_2666 YpsIP31758_2666 YpsIP31758_2666 3018575 3020572 - TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR03304 gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2666 YpsIP31758_2667 YpsIP31758_2667 YpsIP31758_2667 3020832 3021620 - ABC transporter%2C iron chelate uptake transporter (FeCT) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2667 YpsIP31758_2668 YpsIP31758_2668 YpsIP31758_2668 3021617 3022699 - ABC transporter%2C iron chelate uptake transporter (FeCT) family%2C permease protein identified by match to protein family HMM PF01032 gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2668 YpsIP31758_2669 YpsIP31758_2669 YpsIP31758_2669 3022894 3024063 - putative ABC transporter%2C periplasmic iron siderophore/cobalamin-binding protein identified by match to protein family HMM PF01497 gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2669 YpsIP31758_2670 YpsIP31758_2670 lysP lysP 3024325 3025836 - lysine-specific permease LysP identified by similarity to SP:P25737%3B match to protein family HMM PF00324 gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2670 YpsIP31758_2671 YpsIP31758_2671 YpsIP31758_2671 3025946 3026092 - hypothetical protein identified by glimmer%3B putative gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2671 YpsIP31758_2672 YpsIP31758_2672 YpsIP31758_2672 3026094 3026966 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2672 YpsIP31758_2673 YpsIP31758_2673 YpsIP31758_2673 3027371 3027526 - hypothetical protein identified by glimmer%3B putative gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2673 YpsIP31758_2674 YpsIP31758_2674 YpsIP31758_2674 3027624 3028712 + conserved hypothetical protein identified by similarity to SP:Q8ZGJ0%3B match to protein family HMM PF03601%3B match to protein family HMM TIGR00698 gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2674 YpsIP31758_2675 YpsIP31758_2675 nfo nfo 3028876 3029733 + endonuclease 4 identified by similarity to SP:P0A6C1%3B match to protein family HMM PF01261%3B match to protein family HMM TIGR00587 gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2675 YpsIP31758_2676 YpsIP31758_2676 YpsIP31758_2676 3029820 3032291 - fimbrial usher protein identified by match to protein family HMM PF00577 gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2676 YpsIP31758_2677 YpsIP31758_2677 YpsIP31758_2677 3032375 3033196 - gram-negative pili assembly chaperone identified by match to protein family HMM PF00345%3B match to protein family HMM PF02753 gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2677 YpsIP31758_2678 YpsIP31758_2678 YpsIP31758_2678 3033323 3033799 - putative antigen identified by similarity to SP:Q56982 gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2678 YpsIP31758_2679 YpsIP31758_2679 YpsIP31758_2679 3034344 3034832 - hypothetical protein identified by glimmer%3B putative gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2679 YpsIP31758_2680 YpsIP31758_2680 YpsIP31758_2680 3034829 3035473 - transcriptional regulator identified by match to protein family HMM PF00486 gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2680 YpsIP31758_2681 YpsIP31758_2681 fruA fruA 3035798 3037498 - PTS system%2C fructose-specific EIIBC component identified by similarity to SP:P20966%3B match to protein family HMM PF02378%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829%3B match to protein family HMM TIGR01427 gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2681 YpsIP31758_2682 YpsIP31758_2682 fruK fruK 3037513 3038451 - 1-phosphofructokinase identified by similarity to SP:P23539%3B match to protein family HMM PF00294%3B match to protein family HMM TIGR03168 gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2682 YpsIP31758_2683 YpsIP31758_2683 YpsIP31758_2683 3038448 3039581 - phosphocarrier%2C HPr family identified by match to protein family HMM PF00359%3B match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2683 YpsIP31758_2684 YpsIP31758_2684 YpsIP31758_2684 3039731 3039844 - hypothetical protein identified by glimmer%3B putative gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2684 YpsIP31758_2685 YpsIP31758_2685 YpsIP31758_2685 3039603 3039734 + hypothetical protein identified by glimmer%3B putative gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2685 YpsIP31758_2686 YpsIP31758_2686 YpsIP31758_2686 3039843 3040298 + hydrolase%2C NUDIX family domain protein identified by match to protein family HMM PF00293 gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2686 YpsIP31758_2687 YpsIP31758_2687 YpsIP31758_2687 3040391 3041389 - putative ribose ABC transporter%2C permease protein identified by match to protein family HMM PF02653 gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2687 YpsIP31758_2688 YpsIP31758_2688 YpsIP31758_2688 3041425 3042999 - putative ribose ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2688 YpsIP31758_2689 YpsIP31758_2689 YpsIP31758_2689 3043108 3044196 - putative ribose ABC transporter%2C periplasmic ribose-binding protein identified by match to protein family HMM TIGR01409 gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2689 YpsIP31758_2690 YpsIP31758_2690 rpiA1 rpiA1 3044312 3045022 - ribose 5-phosphate isomerase A identified by match to protein family HMM PF06026%3B match to protein family HMM TIGR00021 gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2690 YpsIP31758_2691 YpsIP31758_2691 YpsIP31758_2691 3045042 3046595 - carbohydrate kinase%2C FGGY family identified by similarity to SP:P21939%3B match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01312 gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2691 YpsIP31758_2692 YpsIP31758_2692 YpsIP31758_2692 3046599 3048095 - putative succinate-semialdehyde dehydrogenase (NADP+) identified by similarity to SP:P25526%3B match to protein family HMM PF00171 gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2692 YpsIP31758_2693 YpsIP31758_2693 YpsIP31758_2693 3048459 3049601 + conserved hypothetical protein gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2693 YpsIP31758_2694 YpsIP31758_2694 YpsIP31758_2694 3049613 3050563 + D-isomer specific 2-hydroxyacid dehydrogenase family protein identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2694 YpsIP31758_2695 YpsIP31758_2695 YpsIP31758_2695 3050574 3051407 + oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106 gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2695 YpsIP31758_2696 YpsIP31758_2696 YpsIP31758_2696 3051476 3051730 - conserved hypothetical protein identified by similarity to GB:CAG75631.1%3B match to protein family HMM PF03692 gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2696 YpsIP31758_2697 YpsIP31758_2697 mtr mtr 3052142 3053386 + tryptophan-specific transport protein identified by similarity to SP:P0AAD3%3B match to protein family HMM PF01490%3B match to protein family HMM PF03222%3B match to protein family HMM TIGR00837 gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2697 YpsIP31758_2698 YpsIP31758_2698 YpsIP31758_2698 3053490 3054062 + Elongation factor P-like protein identified by similarity to SP:P0A6N8%3B match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM TIGR02178 gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2698 YpsIP31758_2699 YpsIP31758_2699 uxuA uxuA 3054204 3055397 - mannonate dehydratase identified by similarity to SP:P24215%3B match to protein family HMM PF01261%3B match to protein family HMM PF03786%3B match to protein family HMM TIGR00695 gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2699 YpsIP31758_2700 YpsIP31758_2700 YpsIP31758_2700 3055349 3055507 - hypothetical protein identified by glimmer%3B putative gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2700 YpsIP31758_2701 YpsIP31758_2701 YpsIP31758_2701 3055703 3055822 + hypothetical protein identified by glimmer%3B putative gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2701 YpsIP31758_2702 YpsIP31758_2702 YpsIP31758_2702 3056001 3057473 + mannitol dehydrogenase family protein identified by match to protein family HMM PF01232%3B match to protein family HMM PF08125 gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2702 YpsIP31758_2703 YpsIP31758_2703 uxuR uxuR 3057632 3058375 - uxu operon transcriptional regulator identified by similarity to SP:P39161%3B match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2703 YpsIP31758_2704 YpsIP31758_2704 YpsIP31758_2704 3058746 3058859 + hypothetical protein identified by glimmer%3B putative gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2704 YpsIP31758_2705 YpsIP31758_2705 YpsIP31758_2705 3059183 3060166 + CobW/P47K family protein identified by match to protein family HMM PF02492%3B match to protein family HMM PF07683 gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2705 YpsIP31758_2706 YpsIP31758_2706 YpsIP31758_2706 3060225 3060926 + PAP2 family protein identified by match to protein family HMM PF01569 gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2706 YpsIP31758_2707 YpsIP31758_2707 YpsIP31758_2707 3061368 3061952 + lipoprotein%2C NlpC/P60 family identified by match to protein family HMM PF00877 gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2707 YpsIP31758_2708 YpsIP31758_2708 YpsIP31758_2708 3061973 3062140 - hypothetical protein identified by glimmer%3B putative gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2708 YpsIP31758_2709 YpsIP31758_2709 YpsIP31758_2709 3062132 3062254 + hypothetical protein identified by glimmer%3B putative gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2709 YpsIP31758_2710 YpsIP31758_2710 rtn rtn 3062538 3064118 + protein rtn identified by similarity to SP:P76446%3B match to protein family HMM PF00563 gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2710 YpsIP31758_2711 YpsIP31758_2711 YpsIP31758_2711 3064200 3066008 + ABC transporter%2C periplamic substrate-binding protein identified by match to protein family HMM PF00496 gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2711 YpsIP31758_2712 YpsIP31758_2712 YpsIP31758_2712 3066018 3067118 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2712 YpsIP31758_2713 YpsIP31758_2713 YpsIP31758_2713 3067118 3068146 + ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2713 YpsIP31758_2714 YpsIP31758_2714 YpsIP31758_2714 3068148 3069740 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2714 YpsIP31758_2715 YpsIP31758_2715 YpsIP31758_2715 3069801 3070145 - conserved hypothetical protein identified by similarity to GB:CAG75640.1 gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2715 YpsIP31758_2716 YpsIP31758_2716 YpsIP31758_2716 3070559 3070717 - hypothetical protein identified by glimmer%3B putative gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2716 YpsIP31758_2717 YpsIP31758_2717 bcr bcr 3071130 3072329 - bicyclomycin resistance protein identified by similarity to SP:P28246%3B match to protein family HMM PF00083%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00710 gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2717 YpsIP31758_2718 YpsIP31758_2718 rsuA rsuA 3072433 3073140 - ribosomal small subunit pseudouridine synthase A identified by similarity to SP:P0AA43%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2718 YpsIP31758_2719 YpsIP31758_2719 YpsIP31758_2719 3073674 3075431 + putative helicase identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851 gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2719 YpsIP31758_2720 YpsIP31758_2720 rplY rplY 3075593 3075877 + ribosomal protein L25 identified by match to protein family HMM PF01386 gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2720 YpsIP31758_2721 YpsIP31758_2721 YpsIP31758_2721 3075965 3076969 - nucleoid-associated protein NdpA identified by match to protein family HMM PF04245 gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2721 YpsIP31758_2722 YpsIP31758_2722 YpsIP31758_2722 3077147 3077374 + conserved hypothetical protein identified by match to protein family HMM PF07208 gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2722 YpsIP31758_2723 YpsIP31758_2723 YpsIP31758_2723 3077402 3079198 + sulfatase family protein identified by match to protein family HMM PF00884 gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2723 YpsIP31758_2724 YpsIP31758_2724 YpsIP31758_2724 3079429 3079812 + conserved hypothetical protein identified by similarity to RF:ZP_01176177.1 gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2724 YpsIP31758_2725 YpsIP31758_2725 YpsIP31758_2725 3080169 3081317 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2725 YpsIP31758_2726 YpsIP31758_2726 YpsIP31758_2726 3081330 3081818 + conserved hypothetical protein identified by similarity to GB:AAS61140.1 gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2726 YpsIP31758_2727 YpsIP31758_2727 YpsIP31758_2727 3081818 3081931 + hypothetical protein identified by glimmer%3B putative gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2727 YpsIP31758_2728 YpsIP31758_2728 YpsIP31758_2728 3082518 3082880 + hypothetical protein identified by glimmer%3B putative gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2728 YpsIP31758_2729 YpsIP31758_2729 YpsIP31758_2729 3083006 3084442 - 6-phospho-beta-glucosidase BglA identified by similarity to SP:P42973%3B match to protein family HMM PF00232 gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2729 YpsIP31758_2730 YpsIP31758_2730 YpsIP31758_2730 3084733 3085473 - transcriptional regulator%2C RpiR family identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418 gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2730 YpsIP31758_2731 YpsIP31758_2731 YpsIP31758_2731 3085771 3086550 - tail collar domain protein identified by match to protein family HMM PF07484 gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2731 YpsIP31758_2732 YpsIP31758_2732 YpsIP31758_2732 3086647 3087249 - conserved hypothetical protein identified by similarity to RF:ZP_00826448.1 gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2732 YpsIP31758_2733 YpsIP31758_2733 YpsIP31758_2733 3087246 3088382 - baseplate J-like protein identified by match to protein family HMM PF04865 gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2733 YpsIP31758_2734 YpsIP31758_2734 YpsIP31758_2734 3088386 3088841 - phage protein GP46 identified by match to protein family HMM PF07409 gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2734 YpsIP31758_2735 YpsIP31758_2735 YpsIP31758_2735 3088838 3089434 - phage baseplate assembly protein identified by match to protein family HMM PF06890%3B match to protein family HMM TIGR01644 gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2735 YpsIP31758_2736 YpsIP31758_2736 YpsIP31758_2736 3089450 3090505 - bacteriophage Mu P protein identified by match to protein family HMM PF06893 gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2736 YpsIP31758_2737 YpsIP31758_2737 YpsIP31758_2737 3090502 3091908 - putative DNA circulation protein identified by similarity to SP:P08557%3B match to protein family HMM PF07157 gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2737 YpsIP31758_2738 YpsIP31758_2738 YpsIP31758_2738 3092190 3093683 - conserved hypothetical protein identified by similarity to RF:ZP_00826442.1 gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2738 YpsIP31758_2739 YpsIP31758_2739 YpsIP31758_2739 3093804 3094103 - conserved hypothetical protein identified by similarity to RF:ZP_00826441.1 gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2739 YpsIP31758_2740 YpsIP31758_2740 YpsIP31758_2740 3094105 3094473 - conserved hypothetical protein identified by similarity to GB:BAB38403.1 gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2740 YpsIP31758_2741 YpsIP31758_2741 YpsIP31758_2741 3094495 3096003 - bacteriophage Mu tail sheath protein (GpL) identified by match to protein family HMM PF06274 gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2741 YpsIP31758_2742 YpsIP31758_2742 YpsIP31758_2742 3096000 3096194 - conserved hypothetical protein identified by similarity to RF:ZP_00830957.1 gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2742 YpsIP31758_2743 YpsIP31758_2743 YpsIP31758_2743 3096199 3096816 - conserved hypothetical protein gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2743 YpsIP31758_2744 YpsIP31758_2744 YpsIP31758_2744 3096862 3097152 - conserved hypothetical protein identified by similarity to RF:ZP_00830961.1 gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2744 YpsIP31758_2745 YpsIP31758_2745 YpsIP31758_2745 3097410 3098204 - AP endonuclease%2C family 2 identified by match to protein family HMM PF01261 gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2745 YpsIP31758_2746 YpsIP31758_2746 YpsIP31758_2746 3098180 3098989 - transcriptional regulator%2C DeoR family identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2746 YpsIP31758_2747 YpsIP31758_2747 YpsIP31758_2747 3098995 3099690 - class II aldolase/adducin N-terminal domain protein identified by match to protein family HMM PF00596 gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2747 YpsIP31758_2748 YpsIP31758_2748 YpsIP31758_2748 3099723 3101027 - conserved hypothetical protein identified by similarity to RF:ZP_00989487.1%3B match to protein family HMM PF07005 gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2748 YpsIP31758_2749 YpsIP31758_2749 YpsIP31758_2749 3101238 3101717 - phage antitermination protein Q identified by match to protein family HMM PF06530 gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2749 YpsIP31758_2750 YpsIP31758_2750 YpsIP31758_2750 3101991 3102713 + phage repressor protein identified by similarity to SP:P69202%3B match to protein family HMM PF00717%3B match to protein family HMM PF01381 gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2750 YpsIP31758_2751 YpsIP31758_2751 YpsIP31758_2751 3102919 3103161 + dinI family protein identified by match to protein family HMM PF06183 gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2751 YpsIP31758_2752 YpsIP31758_2752 YpsIP31758_2752 3103322 3104261 + peptidase%2C A26 family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF01278 pseudogene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2752 YpsIP31758_2753 YpsIP31758_2753 YpsIP31758_2753 3104683 3106470 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743 gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2753 YpsIP31758_2754 YpsIP31758_2754 YpsIP31758_2754 3106544 3107572 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2754 YpsIP31758_2755 YpsIP31758_2755 YpsIP31758_2755 3109462 3109671 - hypothetical protein identified by glimmer%3B putative gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2755 YpsIP31758_2756 YpsIP31758_2756 YpsIP31758_2756 3107949 3109475 + putative transport protein gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2756 YpsIP31758_2757 YpsIP31758_2757 YpsIP31758_2757 3110910 3111023 - hypothetical protein identified by glimmer%3B putative gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2757 YpsIP31758_2758 YpsIP31758_2758 YpsIP31758_2758 3109750 3110916 + putative penicillin-binding protein AmpH identified by similarity to SP:P0AD70%3B match to protein family HMM PF00144 gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2758 YpsIP31758_2759 YpsIP31758_2759 YpsIP31758_2759 3111543 3112004 - conserved hypothetical protein identified by match to protein family HMM PF07080 gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2759 YpsIP31758_2760 YpsIP31758_2760 YpsIP31758_2760 3112149 3112760 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2760 YpsIP31758_2761 YpsIP31758_2761 YpsIP31758_2761 3112797 3113912 - porin identified by match to protein family HMM PF00267 gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2761 YpsIP31758_2762 YpsIP31758_2762 YpsIP31758_2762 3115016 3116170 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2762 YpsIP31758_2763 YpsIP31758_2763 YpsIP31758_2763 3116269 3118887 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2763 YpsIP31758_2764 YpsIP31758_2764 rcsB rcsB 3118890 3119543 + capsular synthesis regulator component B identified by similarity to SP:P69407%3B match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2764 YpsIP31758_2765 YpsIP31758_2765 rcsC rcsC 3119611 3122460 - sensor kinase protein RcsC identified by similarity to SP:P14376%3B match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2765 YpsIP31758_2766 YpsIP31758_2766 YpsIP31758_2766 3122544 3122669 - hypothetical protein identified by glimmer%3B putative gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2766 YpsIP31758_2767 YpsIP31758_2767 gyrA gyrA 3122672 3125365 - DNA gyrase%2C A subunit identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063 gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2767 YpsIP31758_2768 YpsIP31758_2768 ubiG ubiG 3125665 3126393 + 3-demethylubiquinone-9 3-methyltransferase identified by similarity to SP:P17993%3B match to protein family HMM TIGR01983 gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2768 YpsIP31758_2769 YpsIP31758_2769 nrdA nrdA 3126887 3129175 + ribonucleoside-diphosphate reductase%2C alpha subunit identified by similarity to SP:P00452%3B match to protein family HMM PF00317%3B match to protein family HMM PF02867%3B match to protein family HMM PF03477%3B match to protein family HMM TIGR02506 gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2769 YpsIP31758_2770 YpsIP31758_2770 YpsIP31758_2770 3129337 3130467 + ribonucleoside-diphosphate reductase%2C beta subunit identified by match to protein family HMM PF00268 gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2770 YpsIP31758_2771 YpsIP31758_2771 YpsIP31758_2771 3130471 3130728 + iron-sulfur cluster-binding protein identified by match to protein family HMM PF00111 gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2771 YpsIP31758_2772 YpsIP31758_2772 eco eco 3130763 3131272 + ecotin identified by similarity to SP:P23827%3B match to protein family HMM PF03974 gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2772 YpsIP31758_2773 YpsIP31758_2773 YpsIP31758_2773 3131330 3132523 - putative competence/damage-inducible protein CinA identified by match to protein family HMM PF00994%3B match to protein family HMM TIGR00177%3B match to protein family HMM TIGR00200 gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2773 YpsIP31758_2774 YpsIP31758_2774 tyrP tyrP 3133142 3134350 + tyrosine-specific transport protein identified by similarity to SP:P0AAD4%3B match to protein family HMM PF01490%3B match to protein family HMM PF03222%3B match to protein family HMM TIGR00837 gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2774 YpsIP31758_2775 YpsIP31758_2775 YpsIP31758_2775 3134607 3135149 - putative outer membrane protein identified by match to protein family HMM PF07437 gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2775 YpsIP31758_2776 YpsIP31758_2776 katA katA 3135494 3136933 + catalase identified by similarity to SP:P42321%3B match to protein family HMM PF00199 gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2776 YpsIP31758_2777 YpsIP31758_2777 dinG dinG 3137001 3139181 - ATP-dependent helicase dinG identified by similarity to SP:P27296 gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2777 YpsIP31758_2778 YpsIP31758_2778 YpsIP31758_2778 3139451 3140566 + outer membrane protein N identified by similarity to SP:P77747%3B match to protein family HMM PF00267 gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2778 YpsIP31758_2779 YpsIP31758_2779 YpsIP31758_2779 3140978 3141868 + integral membrane protein identified by match to protein family HMM PF00892 gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2779 YpsIP31758_2780 YpsIP31758_2780 YpsIP31758_2780 3141993 3142211 + conserved hypothetical protein identified by similarity to GB:CAE13816.1 gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2780 YpsIP31758_2781 YpsIP31758_2781 adiA adiA 3142329 3144635 - biodegradative arginine decarboxylase identified by similarity to SP:P28629%3B match to protein family HMM PF01276%3B match to protein family HMM PF03709%3B match to protein family HMM PF03711 gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2781 YpsIP31758_2782 YpsIP31758_2782 adiC adiC 3144705 3146039 - arginine/agmatine antiporter identified by similarity to SP:P60064%3B match to protein family HMM PF00324 gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2782 YpsIP31758_2783 YpsIP31758_2783 YpsIP31758_2783 3146493 3147329 - quaternary amine uptake ABC transporter (QAT) family%2C permease protein identified by match to protein family HMM PF00528 gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2783 YpsIP31758_2784 YpsIP31758_2784 YpsIP31758_2784 3147326 3148264 - quaternary amine uptake ABC transporter (QAT) family%2C ATP-binding protein identified by similarity to SP:O34992%3B match to protein family HMM PF00005 gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2784 YpsIP31758_2785 YpsIP31758_2785 YpsIP31758_2785 3148261 3149415 - quaternary amine uptake ABC transporter (QAT) family%2C permease protein identified by match to protein family HMM PF00528 gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2785 YpsIP31758_2786 YpsIP31758_2786 YpsIP31758_2786 3149676 3150608 - quaternary amine uptake ABC transporter (QAT) family%2C substrate-binding protein identified by match to protein family HMM PF04069 gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2786 YpsIP31758_2787 YpsIP31758_2787 sseA sseA 3151344 3152198 + 3-mercaptopyruvate sulfurtransferase identified by similarity to SP:P31142%3B match to protein family HMM PF00581 gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2787 YpsIP31758_2788 YpsIP31758_2788 YpsIP31758_2788 3152332 3153747 - aromatic amino acid decarboxylase identified by similarity to GB:CAB71551.1%3B match to protein family HMM PF00282 gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2788 YpsIP31758_2789 YpsIP31758_2789 YpsIP31758_2789 3153771 3154628 - conserved hypothetical protein identified by similarity to GB:CAE13921.1 gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2789 YpsIP31758_2790 YpsIP31758_2790 YpsIP31758_2790 3154743 3155441 - hydrophobic amino acid ABC transporter (HAAT) family%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR03410 gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2790 YpsIP31758_2791 YpsIP31758_2791 YpsIP31758_2791 3155535 3156371 - hydrophobic amino acid ABC transporter (HAAT) family%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR03411 gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2791 YpsIP31758_2792 YpsIP31758_2792 YpsIP31758_2792 3156368 3157444 - hydrophobic amino acid ABC transporter (HAAT) family%2C permease protein identified by match to protein family HMM PF02653%3B match to protein family HMM TIGR03408 gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2792 YpsIP31758_2793 YpsIP31758_2793 YpsIP31758_2793 3157444 3158991 - hydrophobic amino acid ABC transporter (HAAT) family%2C permease protein identified by match to protein family HMM PF02653%3B match to protein family HMM TIGR03409 gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2793 YpsIP31758_2794 YpsIP31758_2794 urtA urtA 3159169 3160437 - urea ABC transporter%2C urea binding protein identified by match to protein family HMM TIGR03407 gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2794 YpsIP31758_2795 YpsIP31758_2795 YpsIP31758_2795 3160906 3161379 - conserved hypothetical protein identified by similarity to GB:AAA60487.1%3B match to protein family HMM PF07308 gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2795 YpsIP31758_2796 YpsIP31758_2796 YpsIP31758_2796 3161624 3162505 - phosphonate ABC transporter%2C permease protein Y. pseudotuberculosis appears to contain 2 copies of phnE-like permease from E coli phn operon%3B identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01097 gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2796 YpsIP31758_2797 YpsIP31758_2797 phnE phnE 3162508 3163368 - phosphonate ABC transporter%2C permease protein identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01097 gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2797 YpsIP31758_2798 YpsIP31758_2798 phnD phnD 3163455 3164384 - phosphonate ABC transporter%2C periplasmic phosphonate-binding protein identified by similarity to SP:P16682%3B match to protein family HMM TIGR01098%3B match to protein family HMM TIGR03431 gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2798 YpsIP31758_2799 YpsIP31758_2799 phnC phnC 3164421 3165257 - phosphonate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR02315 gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2799 YpsIP31758_2800 YpsIP31758_2800 YpsIP31758_2800 3165465 3165713 - putative membrane protein identified by match to protein family HMM PF04226 gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2800 YpsIP31758_2801 YpsIP31758_2801 YpsIP31758_2801 3165898 3167001 - conserved hypothetical protein identified by similarity to GB:AAZ54720.1 gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2801 YpsIP31758_2802 YpsIP31758_2802 YpsIP31758_2802 3167143 3167313 - hypothetical protein identified by glimmer%3B putative gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2802 YpsIP31758_2803 YpsIP31758_2803 YpsIP31758_2803 3167314 3167655 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2803 YpsIP31758_2804 YpsIP31758_2804 YpsIP31758_2804 3167681 3168220 - adenylate cyclase%2C class IV identified by similarity to GB:CAA11532.1%3B match to protein family HMM PF01928%3B match to protein family HMM TIGR00318 gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2804 YpsIP31758_2805 YpsIP31758_2805 dld dld 3168430 3170142 + D-lactate dehydrogenase identified by similarity to SP:P06149%3B match to protein family HMM PF01565 gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2805 YpsIP31758_2806 YpsIP31758_2806 pbpG pbpG 3170263 3171198 - penicillin-binding protein 7 identified by similarity to SP:P33364%3B match to protein family HMM PF00768 gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2806 YpsIP31758_2807 YpsIP31758_2807 YpsIP31758_2807 3171538 3171717 + hypothetical protein identified by glimmer%3B putative gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2807 YpsIP31758_2808 YpsIP31758_2808 YpsIP31758_2808 3171791 3172729 - tRNA-dihydrouridine synthase identified by match to protein family HMM PF01207 gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2808 YpsIP31758_2809 YpsIP31758_2809 YpsIP31758_2809 3173029 3173963 - conserved domain protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to RF:ZP_01110360.1 pseudogene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2809 YpsIP31758_2810 YpsIP31758_2810 YpsIP31758_2810 3174341 3175696 - ATP-dependent RNA helicase%2C DEAD/DEAH box family identified by similarity to SP:P25888%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2810 YpsIP31758_2811 YpsIP31758_2811 YpsIP31758_2811 3176087 3176797 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2811 YpsIP31758_2812 YpsIP31758_2812 YpsIP31758_2812 3176849 3177835 + transport protein%2C MFP family identified by match to protein family HMM PF00529 gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2812 YpsIP31758_2813 YpsIP31758_2813 YpsIP31758_2813 3177849 3179591 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2813 YpsIP31758_2814 YpsIP31758_2814 YpsIP31758_2814 3179596 3180771 + ABC transporter%2C permease protein identified by match to protein family HMM PF01061 gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2814 YpsIP31758_2815 YpsIP31758_2815 YpsIP31758_2815 3180784 3181890 + ABC transporter%2C permease protein identified by match to protein family HMM PF01061 gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2815 YpsIP31758_2816 YpsIP31758_2816 YpsIP31758_2816 3181929 3182255 - conserved hypothetical protein identified by match to protein family HMM PF07110%3B match to protein family HMM TIGR02118 gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2816 YpsIP31758_2817 YpsIP31758_2817 YpsIP31758_2817 3182266 3182493 - hypothetical protein identified by glimmer%3B putative gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2817 YpsIP31758_2818 YpsIP31758_2818 YpsIP31758_2818 3182825 3183736 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2818 YpsIP31758_2819 YpsIP31758_2819 YpsIP31758_2819 3183737 3184846 - oxidoreductase%2C FAD/FMN-binding identified by match to protein family HMM PF00724 gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2819 YpsIP31758_2820 YpsIP31758_2820 zraR zraR 3185194 3186558 - transcriptional regulatory protein ZraR identified by similarity to SP:P14375%3B match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728 gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2820 YpsIP31758_2821 YpsIP31758_2821 YpsIP31758_2821 3186545 3188359 - sensory box histidine kinase identified by similarity to SP:P14377%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2821 YpsIP31758_2822 YpsIP31758_2822 YpsIP31758_2822 3188717 3189190 + conserved hypothetical protein gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2822 YpsIP31758_2823 YpsIP31758_2823 xapB xapB 3189278 3190534 - xanthosine transporter XapB identified by similarity to SP:P45562%3B match to protein family HMM PF03825%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00889 gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2823 YpsIP31758_2824 YpsIP31758_2824 xapA xapA 3190673 3191536 - xanthosine phosphorylase identified by match to protein family HMM PF00896%3B match to protein family HMM TIGR01697%3B match to protein family HMM TIGR01699 gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2824 YpsIP31758_2825 YpsIP31758_2825 YpsIP31758_2825 3191849 3192730 + integral membrane protein identified by match to protein family HMM PF00892 gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2825 YpsIP31758_2826 YpsIP31758_2826 xapR xapR 3192768 3193661 - transcriptional regulator XapR identified by similarity to SP:P23841%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2826 YpsIP31758_2827 YpsIP31758_2827 YpsIP31758_2827 3193719 3193838 + hypothetical protein identified by glimmer%3B putative gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2827 YpsIP31758_2828 YpsIP31758_2828 betT betT 3193902 3195950 - high-affinity choline transport protein identified by similarity to SP:P0ABC9%3B match to protein family HMM PF02028%3B match to protein family HMM TIGR00842 gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2828 YpsIP31758_2829 YpsIP31758_2829 betI betI 3196316 3196912 + transcriptional regulator BetI identified by similarity to SP:P17446%3B match to protein family HMM PF00440%3B match to protein family HMM TIGR03384 gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2829 YpsIP31758_2830 YpsIP31758_2830 betB betB 3196970 3198442 + betaine aldehyde dehydrogenase identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01804 gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2830 YpsIP31758_2831 YpsIP31758_2831 betA betA 3198465 3200168 + choline dehydrogenase identified by similarity to SP:P17444%3B match to protein family HMM PF00732%3B match to protein family HMM PF05199%3B match to protein family HMM TIGR01810 gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2831 YpsIP31758_2832 YpsIP31758_2832 YpsIP31758_2832 3200379 3201089 - putative membrane protein identified by match to protein family HMM PF01027 gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2832 YpsIP31758_2833 YpsIP31758_2833 moaE moaE 3201232 3201687 - molybdopterin converting factor%2C subunit 2 identified by similarity to SP:P30749%3B match to protein family HMM PF02391 gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2833 YpsIP31758_2834 YpsIP31758_2834 moaD moaD 3201687 3201932 - molybdopterin converting factor%2C subunit 1 identified by similarity to SP:P30748%3B match to protein family HMM PF02597%3B match to protein family HMM TIGR01682 gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2834 YpsIP31758_2835 YpsIP31758_2835 moaC moaC 3201929 3202408 - molybdenum cofactor biosynthesis protein C identified by match to protein family HMM PF01967%3B match to protein family HMM TIGR00581 gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2835 YpsIP31758_2836 YpsIP31758_2836 moaA moaA 3202631 3203611 - molybdenum cofactor biosynthesis protein A identified by match to protein family HMM PF04055%3B match to protein family HMM PF06463%3B match to protein family HMM TIGR02666 gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2836 YpsIP31758_2837 YpsIP31758_2837 YpsIP31758_2837 3204143 3205066 + conserved hypothetical protein identified by match to protein family HMM PF01933%3B match to protein family HMM TIGR01826 gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2837 YpsIP31758_2838 YpsIP31758_2838 YpsIP31758_2838 3205197 3205442 - conserved hypothetical protein identified by similarity to GB:AAN04552.1 gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2838 YpsIP31758_2839 YpsIP31758_2839 uvrB uvrB 3205753 3207768 - UvrABC system%2C B protein identified by similarity to SP:P0A8F8%3B match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00631 gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2839 YpsIP31758_2840 YpsIP31758_2840 YpsIP31758_2840 3208859 3209569 + putative amino acid ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2840 YpsIP31758_2841 YpsIP31758_2841 bioD2 bioD2 3209724 3210446 - dethiobiotin synthase identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR00347 gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2841 YpsIP31758_2842 YpsIP31758_2842 bioC bioC 3210439 3211242 - biotin biosynthesis protein BioC identified by match to protein family HMM PF01209%3B match to protein family HMM TIGR02072 gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2842 YpsIP31758_2843 YpsIP31758_2843 bioF bioF 3211226 3212377 - 8-amino-7-oxononanoate synthase identified by match to protein family HMM PF00155%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR00858 gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2843 YpsIP31758_2844 YpsIP31758_2844 bioB bioB 3212377 3213414 - biotin synthase identified by similarity to SP:P12996%3B match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR00433 gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2844 YpsIP31758_2845 YpsIP31758_2845 bioA bioA 3213513 3214793 + adenosylmethionine-8-amino-7-oxononanoate transaminase identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00508 gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2845 YpsIP31758_2846 YpsIP31758_2846 pgl pgl 3214978 3215982 - 6-phosphogluconolactonase identified by similarity to SP:P52697 gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2846 YpsIP31758_2847 YpsIP31758_2847 YpsIP31758_2847 3216273 3217094 + hydrolase%2C Cof family identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2847 YpsIP31758_2848 YpsIP31758_2848 modC modC 3217150 3218229 - molybdate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459%3B match to protein family HMM TIGR00638%3B match to protein family HMM TIGR02142 gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2848 YpsIP31758_2849 YpsIP31758_2849 modB modB 3218223 3218918 - molybdate ABC transporter%2C permease protein identified by similarity to SP:P09834%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR02141 gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2849 YpsIP31758_2850 YpsIP31758_2850 modA modA 3218918 3219697 - molybdate ABC transporter%2C periplasmic molybdate-binding protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01256 gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2850 YpsIP31758_2851 YpsIP31758_2851 YpsIP31758_2851 3219932 3220084 - conserved hypothetical protein identified by similarity to GB:AAN79311.1 gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2851 YpsIP31758_2852 YpsIP31758_2852 modE modE 3220350 3221141 + transcriptional regulator ModE identified by similarity to SP:P0A9G8%3B match to protein family HMM PF00126%3B match to protein family HMM PF03459%3B match to protein family HMM TIGR00637%3B match to protein family HMM TIGR00638 gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2852 YpsIP31758_2853 YpsIP31758_2853 modF modF 3221251 3222741 + ABC transporter%2C ATP-binding protein identified by similarity to SP:P31060%3B match to protein family HMM PF00005 gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2853 YpsIP31758_2854 YpsIP31758_2854 YpsIP31758_2854 3222957 3223775 + CAAX amino terminal protease family protein identified by match to protein family HMM PF02517 gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2854 YpsIP31758_2855 YpsIP31758_2855 galE galE 3224135 3225151 + UDP-glucose 4-epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179 gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2855 YpsIP31758_2856 YpsIP31758_2856 galT galT 3225161 3226213 + galactose-1-phosphate uridylyltransferase identified by match to protein family HMM PF01087%3B match to protein family HMM PF02744%3B match to protein family HMM TIGR00209 gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2856 YpsIP31758_2857 YpsIP31758_2857 galK galK 3226210 3227361 + galactokinase identified by similarity to SP:P22713%3B match to protein family HMM PF00288%3B match to protein family HMM TIGR00131 gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2857 YpsIP31758_2858 YpsIP31758_2858 galM galM 3227355 3228425 + galactose mutarotase identified by match to protein family HMM PF01263%3B match to protein family HMM TIGR02636 gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2858 YpsIP31758_2859 YpsIP31758_2859 psiF psiF 3228718 3229053 + phosphate starvation-inducible protein PsiF identified by similarity to SP:P27295%3B match to protein family HMM PF07769 gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2859 YpsIP31758_2860 YpsIP31758_2860 YpsIP31758_2860 3229147 3229395 - conserved domain protein gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2860 YpsIP31758_2861 YpsIP31758_2861 gpmA gpmA 3229400 3230152 + 2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase identified by similarity to SP:P62707%3B match to protein family HMM PF00300%3B match to protein family HMM TIGR01258 gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2861 YpsIP31758_2862 YpsIP31758_2862 YpsIP31758_2862 3230334 3231386 - phospho-2-dehydro-3-deoxyheptonate aldolase identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR00034 gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2862 YpsIP31758_2863 YpsIP31758_2863 zitB zitB 3231853 3232791 + zinc transporter ZitB identified by similarity to SP:P75757%3B match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2863 YpsIP31758_2864 YpsIP31758_2864 pnuC pnuC 3232906 3233631 - nicotinamide mononucleotide transporter PnuC identified by similarity to SP:P24520%3B match to protein family HMM PF04973%3B match to protein family HMM TIGR01528 gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2864 YpsIP31758_2865 YpsIP31758_2865 nadA nadA 3233753 3234814 - quinolinate synthetase complex%2C A subunit identified by match to protein family HMM PF02445%3B match to protein family HMM TIGR00550 gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2865 YpsIP31758_2866 YpsIP31758_2866 ygbF ygbF 3236357 3237166 - tol-pal system protein YbgF identified by match to protein family HMM PF07719%3B match to protein family HMM TIGR02795 gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2866 YpsIP31758_2867 YpsIP31758_2867 pal pal 3237176 3237682 - peptidoglycan-associated lipoprotein identified by match to protein family HMM PF00691%3B match to protein family HMM TIGR02802 gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2867 YpsIP31758_2868 YpsIP31758_2868 tolB tolB 3237733 3239025 - Tol-Pal system beta propeller repeat protein TolB identified by match to protein family HMM PF04052%3B match to protein family HMM PF07676%3B match to protein family HMM TIGR02800 gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2868 YpsIP31758_2869 YpsIP31758_2869 tolA tolA 3239145 3240311 - protein TolA identified by similarity to SP:P19934 gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2869 YpsIP31758_2870 YpsIP31758_2870 tolR tolR 3240423 3240851 - protein TolR identified by match to protein family HMM PF02472%3B match to protein family HMM TIGR02801 gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2870 YpsIP31758_2871 YpsIP31758_2871 tolQ tolQ 3240864 3241550 - protein TolQ identified by similarity to SP:P0ABV1%3B match to protein family HMM PF01618%3B match to protein family HMM TIGR02796 gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2871 YpsIP31758_2872 YpsIP31758_2872 ybgC ybgC 3241550 3241951 - tol-pal system-associated acyl-CoA thioesterase identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00051%3B match to protein family HMM TIGR02799 gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2872 YpsIP31758_2873 YpsIP31758_2873 YpsIP31758_2873 3242083 3242370 - cyd operon protein YbgE identified by match to protein family HMM TIGR02112 gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2873 YpsIP31758_2874 YpsIP31758_2874 YpsIP31758_2874 3242360 3242494 - cyd operon protein YbgT identified by match to protein family HMM PF08173%3B match to protein family HMM TIGR02106 gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2874 YpsIP31758_2875 YpsIP31758_2875 cydB cydB 3242507 3243646 - cytochrome d ubiquinol oxidase%2C subunit II identified by match to protein family HMM PF02322%3B match to protein family HMM TIGR00203 gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2875 YpsIP31758_2876 YpsIP31758_2876 cydA cydA 3243661 3245229 - cytochrome d ubiquinol oxidase%2C subunit I identified by similarity to SP:P0ABK1%3B match to protein family HMM PF01654 gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2876 YpsIP31758_2877 YpsIP31758_2877 YpsIP31758_2877 3246035 3246544 - IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2877 YpsIP31758_2878 YpsIP31758_2878 sucD sucD 3246707 3247579 - succinyl-CoA synthetase%2C alpha subunit identified by similarity to SP:Q51567%3B match to protein family HMM PF00549%3B match to protein family HMM PF02629%3B match to protein family HMM TIGR01019 gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2878 YpsIP31758_2879 YpsIP31758_2879 sucC sucC 3247579 3248745 - succinyl-CoA synthetase%2C beta subunit identified by similarity to SP:P53593%3B match to protein family HMM PF00549%3B match to protein family HMM TIGR01016 gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2879 YpsIP31758_2880 YpsIP31758_2880 sucB sucB 3248858 3250081 - 2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817%3B match to protein family HMM TIGR01347 gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2880 YpsIP31758_2881 YpsIP31758_2881 sucA sucA 3250111 3252918 - 2-oxoglutarate dehydrogenase%2C E1 component identified by similarity to SP:P07015%3B match to protein family HMM PF00676%3B match to protein family HMM PF02779%3B match to protein family HMM TIGR00239 gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2881 YpsIP31758_2882 YpsIP31758_2882 sdhB sdhB 3253274 3253990 - succinate dehydrogenase%2C iron-sulfur protein identified by match to protein family HMM TIGR00384 gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2882 YpsIP31758_2883 YpsIP31758_2883 sdhA sdhA 3254040 3255806 - succinate dehydrogenase%2C flavoprotein subunit identified by match to protein family HMM PF00890%3B match to protein family HMM PF02910%3B match to protein family HMM TIGR01812%3B match to protein family HMM TIGR01816 gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2883 YpsIP31758_2884 YpsIP31758_2884 sdhD sdhD 3255807 3256154 - succinate dehydrogenase%2C hydrophobic membrane anchor protein identified by match to protein family HMM TIGR02968 gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2884 YpsIP31758_2885 YpsIP31758_2885 sdhC sdhC 3256148 3256525 - succinate dehydrogenase%2C cytochrome b556 subunit identified by match to protein family HMM PF01127%3B match to protein family HMM TIGR02970 gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2885 YpsIP31758_2886 YpsIP31758_2886 gltA gltA 3257256 3258536 + citrate synthase I identified by similarity to SP:P0ABH7%3B match to protein family HMM PF00285%3B match to protein family HMM TIGR01798 gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2886 YpsIP31758_2887 YpsIP31758_2887 grpE grpE 3258644 3259222 - co-chaperone GrpE identified by similarity to SP:P09372%3B match to protein family HMM PF01025 gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2887 YpsIP31758_2888 YpsIP31758_2888 YpsIP31758_2888 3259346 3260227 + NAD(+)/NADH kinase identified by match to protein family HMM PF01513 gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2888 YpsIP31758_2889 YpsIP31758_2889 recN recN 3260314 3261975 + DNA repair protein RecN identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00634 gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2889 YpsIP31758_2890 YpsIP31758_2890 YpsIP31758_2890 3262089 3262430 + lipoprotein%2C SmpA/OmlA family identified by match to protein family HMM PF04355 gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2890 YpsIP31758_2891 YpsIP31758_2891 YpsIP31758_2891 3262580 3262864 - conserved hypothetical protein identified by similarity to SP:P52119%3B match to protein family HMM PF03658 gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2891 YpsIP31758_2892 YpsIP31758_2892 YpsIP31758_2892 3262857 3263291 - putative polyketide cyclase/dehydrase identified by match to protein family HMM PF03364 gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2892 YpsIP31758_2893 YpsIP31758_2893 smpB smpB 3263452 3263934 + SsrA-binding protein identified by match to protein family HMM PF01668%3B match to protein family HMM TIGR00086 gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2893 YpsIP31758_2895 YpsIP31758_2895 YpsIP31758_2895 3264540 3265070 + phage integrase family protein identified by similarity to SP:P32053 gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2895 YpsIP31758_2896 YpsIP31758_2896 YpsIP31758_2896 3265119 3265382 + transposase identified by match to protein family HMM PF01527 gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2896 YpsIP31758_2897 YpsIP31758_2897 YpsIP31758_2897 3266331 3266459 + hypothetical protein identified by glimmer%3B putative gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2897 YpsIP31758_2898 YpsIP31758_2898 YpsIP31758_2898 3266775 3267542 + esterase%2C DmpD/TodF/XylF family identified by similarity to SP:P75736%3B match to protein family HMM PF00561%3B match to protein family HMM PF07819 gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2898 YpsIP31758_2899 YpsIP31758_2899 YpsIP31758_2899 3267874 3268161 + transcriptional regulator%2C CopG family identified by match to protein family HMM PF01402 gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2899 YpsIP31758_2900 YpsIP31758_2900 YpsIP31758_2900 3268294 3268542 + hypothetical protein identified by glimmer%3B putative gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2900 YpsIP31758_2901 YpsIP31758_2901 fldA fldA 3268615 3269142 + flavodoxin 1 identified by match to protein family HMM PF00258%3B match to protein family HMM TIGR01752 gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2901 YpsIP31758_2902 YpsIP31758_2902 YpsIP31758_2902 3269509 3269955 + ferric uptake regulation protein identified by similarity to SP:P0A9A9%3B match to protein family HMM PF01475 gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2902 YpsIP31758_2903 YpsIP31758_2903 chb chb 3270396 3273071 - chitobiase identified by similarity to SP:Q54468%3B match to protein family HMM PF00728%3B match to protein family HMM PF02838%3B match to protein family HMM PF03173%3B match to protein family HMM PF03174 gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2903 YpsIP31758_2904 YpsIP31758_2904 YpsIP31758_2904 3273197 3273334 + hypothetical protein identified by glimmer%3B putative gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2904 YpsIP31758_2905 YpsIP31758_2905 YpsIP31758_2905 3273399 3274820 - outer membrane porin%2C OprD family identified by match to protein family HMM PF03573 gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2905 YpsIP31758_2906 YpsIP31758_2906 YpsIP31758_2906 3274956 3275078 + hypothetical protein identified by glimmer%3B putative gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2906 YpsIP31758_2907 YpsIP31758_2907 glnS glnS 3275542 3277209 - glutaminyl-tRNA synthetase identified by similarity to SP:P00962%3B match to protein family HMM PF00749%3B match to protein family HMM PF03950%3B match to protein family HMM TIGR00440 gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2907 YpsIP31758_2908 YpsIP31758_2908 nagE nagE 3277424 3279457 - PTS system%2C N-acetylglucosamine-specific IIBC component identified by similarity to SP:P09323%3B match to protein family HMM PF00358%3B match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR00830%3B match to protein family HMM TIGR01998 gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2908 YpsIP31758_2909 YpsIP31758_2909 nagB nagB 3279856 3280656 + glucosamine-6-phosphate isomerase identified by match to protein family HMM PF01182%3B match to protein family HMM TIGR00502 gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2909 YpsIP31758_2910 YpsIP31758_2910 nagA nagA 3280676 3281821 + N-acetylglucosamine-6-phosphate deacetylase identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR00221 gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2910 YpsIP31758_2911 YpsIP31758_2911 nagC nagC 3281838 3283064 + N-acetylglucosamine repressor identified by similarity to SP:P15301%3B match to protein family HMM PF00480 gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2911 YpsIP31758_2912 YpsIP31758_2912 nagD nagD 3283137 3283889 + hydrolase NagD identified by similarity to SP:P15302%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01460 gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2912 YpsIP31758_2913 YpsIP31758_2913 asnB asnB 3284244 3285908 + asparagine synthase B%2C glutamine-hydrolyzing identified by similarity to SP:P22106%3B match to protein family HMM PF00310%3B match to protein family HMM PF00733%3B match to protein family HMM TIGR01536 gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2913 YpsIP31758_2914 YpsIP31758_2914 ubiF ubiF 3287398 3288579 - 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase identified by similarity to SP:P75728%3B match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01988 gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2914 YpsIP31758_2915 YpsIP31758_2915 miaB miaB 3288821 3290245 + tRNA-I(6)A37 thiotransferase enzyme MiaB identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01574 gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2915 YpsIP31758_2916 YpsIP31758_2916 YpsIP31758_2916 3290572 3291645 + PhoH family protein identified by match to protein family HMM PF02562 gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2916 YpsIP31758_2917 YpsIP31758_2917 YpsIP31758_2917 3291642 3292115 + conserved hypothetical protein TIGR00043 identified by match to protein family HMM PF02130%3B match to protein family HMM TIGR00043 gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2917 YpsIP31758_2918 YpsIP31758_2918 corC corC 3292233 3293111 + magnesium and cobalt efflux protein CorC identified by similarity to SP:P0A2L3%3B match to protein family HMM PF00571%3B match to protein family HMM PF03471 gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2918 YpsIP31758_2919 YpsIP31758_2919 lnt lnt 3293119 3294666 + apolipoprotein N-acyltransferase identified by similarity to SP:P23930%3B match to protein family HMM PF00795%3B match to protein family HMM TIGR00546 gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2919 YpsIP31758_2920 YpsIP31758_2920 gltI gltI 3295463 3296380 + glutamate/aspartate ABC transporter%2C periplasmic glutamate/aspartate-binding protein identified by similarity to SP:P37902%3B match to protein family HMM PF00497 gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2920 YpsIP31758_2921 YpsIP31758_2921 gltJ gltJ 3296554 3297294 + glutamate/aspartate ABC transporter%2C permease protein GltJ identified by similarity to SP:P41074%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2921 YpsIP31758_2922 YpsIP31758_2922 gltK gltK 3297294 3297968 + glutamate/aspartate ABC transporter%2C permease protein GltK identified by similarity to SP:P41075%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2922 YpsIP31758_2923 YpsIP31758_2923 gltL gltL 3297968 3298693 + glutamate/aspartate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2923 YpsIP31758_2924 YpsIP31758_2924 YpsIP31758_2924 3298827 3299309 - conserved hypothetical protein identified by similarity to GB:CAD05130.1%3B match to protein family HMM PF07295 gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2924 YpsIP31758_2925 YpsIP31758_2925 YpsIP31758_2925 3299393 3299512 + hypothetical protein identified by glimmer%3B putative gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2925 YpsIP31758_2926 YpsIP31758_2926 leuS leuS 3299571 3302153 + leucyl-tRNA synthetase identified by match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00396 gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2926 YpsIP31758_2927 YpsIP31758_2927 rlpB rlpB 3302168 3302791 + rare lipoprotein B identified by similarity to SP:P0ADC1%3B match to protein family HMM PF04390 gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2927 YpsIP31758_2928 YpsIP31758_2928 holA holA 3302788 3303822 + DNA polymerase III%2C delta subunit identified by similarity to SP:P28630%3B match to protein family HMM PF06144%3B match to protein family HMM TIGR01128 gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2928 YpsIP31758_2929 YpsIP31758_2929 nadD nadD 3303812 3304474 + nicotinate (nicotinamide) nucleotide adenylyltransferase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00482 gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2929 YpsIP31758_2930 YpsIP31758_2930 YpsIP31758_2930 3304940 3306721 - bacterial Ig-like domain (group 2) protein gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2930 YpsIP31758_2931 YpsIP31758_2931 YpsIP31758_2931 3306939 3308798 - hypothetical protein identified by glimmer%3B putative gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2931 YpsIP31758_2932 YpsIP31758_2932 YpsIP31758_2932 3308807 3309634 - hypothetical protein identified by glimmer%3B putative gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2932 YpsIP31758_2933 YpsIP31758_2933 YpsIP31758_2933 3309687 3310886 - conserved hypothetical protein identified by similarity to RF:YP_024914.1 gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2933 YpsIP31758_2934 YpsIP31758_2934 YpsIP31758_2934 3310870 3311229 - conserved hypothetical protein identified by similarity to RF:ZP_00827777.1 gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2934 YpsIP31758_2935 YpsIP31758_2935 YpsIP31758_2935 3311226 3311903 - conserved hypothetical protein identified by similarity to RF:YP_024916.1 gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2935 YpsIP31758_2936 YpsIP31758_2936 YpsIP31758_2936 3311885 3312724 - conserved hypothetical protein identified by similarity to RF:YP_249014.1 gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2936 YpsIP31758_2937 YpsIP31758_2937 YpsIP31758_2937 3312728 3313030 - conserved hypothetical protein identified by similarity to RF:YP_024918.1 gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2937 YpsIP31758_2938 YpsIP31758_2938 YpsIP31758_2938 3313032 3313556 - conserved hypothetical protein identified by similarity to RF:ZP_00986352.1 gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2938 YpsIP31758_2939 YpsIP31758_2939 YpsIP31758_2939 3313556 3314104 - hypothetical protein identified by glimmer%3B putative gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2939 YpsIP31758_2940 YpsIP31758_2940 YpsIP31758_2940 3314169 3314840 - conserved domain protein identified by similarity to RF:YP_024865.1 gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2940 YpsIP31758_2941 YpsIP31758_2941 YpsIP31758_2941 3314833 3315627 - conserved hypothetical protein identified by similarity to RF:YP_024874.1 gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2941 YpsIP31758_2942 YpsIP31758_2942 YpsIP31758_2942 3315581 3316189 - conserved hypothetical protein identified by similarity to RF:YP_454902.1 gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2942 YpsIP31758_2943 YpsIP31758_2943 YpsIP31758_2943 3316186 3316548 - conserved domain protein identified by similarity to RF:NP_112045.1 gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2943 YpsIP31758_2944 YpsIP31758_2944 YpsIP31758_2944 3316570 3317088 - pentapeptide repeat protein identified by match to protein family HMM PF00805 gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2944 YpsIP31758_2945 YpsIP31758_2945 YpsIP31758_2945 3317622 3317810 - hypothetical protein identified by glimmer%3B putative gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2945 YpsIP31758_2946 YpsIP31758_2946 int int 3317905 3318843 + integrase identified by similarity to SP:P03700%3B match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2946 YpsIP31758_2947 YpsIP31758_2947 YpsIP31758_2947 3318918 3319235 + iojap-related protein identified by match to protein family HMM PF02410%3B match to protein family HMM TIGR00090 gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2947 YpsIP31758_2948 YpsIP31758_2948 YpsIP31758_2948 3319239 3319709 + conserved hypothetical protein TIGR00246 identified by match to protein family HMM PF02590%3B match to protein family HMM TIGR00246 gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2948 YpsIP31758_2949 YpsIP31758_2949 mrdA mrdA 3319791 3321686 + penicillin-binding protein 2 identified by similarity to SP:P0AD65%3B match to protein family HMM PF00905%3B match to protein family HMM PF03717%3B match to protein family HMM TIGR03423 gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2949 YpsIP31758_2950 YpsIP31758_2950 mrdB mrdB 3321899 3323011 + rod shape-determining protein RodA identified by similarity to SP:P0ABG9%3B match to protein family HMM PF01098%3B match to protein family HMM TIGR02210 gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2950 YpsIP31758_2951 YpsIP31758_2951 YpsIP31758_2951 3323021 3324103 + rare lipoprotein A/sporulation and cell division repeat protein identified by match to protein family HMM PF03330%3B match to protein family HMM PF05036%3B match to protein family HMM TIGR00413 gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2951 YpsIP31758_2952 YpsIP31758_2952 YpsIP31758_2952 3324506 3325708 + D-alanyl-D-alanine carboxypeptidase identified by match to protein family HMM PF00144%3B match to protein family HMM PF00768%3B match to protein family HMM PF07943 gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2952 YpsIP31758_2953 YpsIP31758_2953 YpsIP31758_2953 3325906 3326169 + conserved hypothetical protein identified by match to protein family HMM PF04359 gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2953 YpsIP31758_2954 YpsIP31758_2954 lipB lipB 3326381 3327082 + lipoyltransferase identified by similarity to SP:P60720%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00214 gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2954 YpsIP31758_2955 YpsIP31758_2955 lipA lipA 3327275 3328240 + lipoic acid synthetase identified by similarity to SP:P60716%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00510 gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2955 YpsIP31758_2956 YpsIP31758_2956 tatA2 tatA2 3328421 3328678 - twin arginine-targeting protein translocase TatA identified by similarity to SP:P69428%3B match to protein family HMM PF02416%3B match to protein family HMM TIGR01411 gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2956 YpsIP31758_2957 YpsIP31758_2957 crcB crcB 3329262 3329645 + crcB protein identified by similarity to SP:P37002%3B match to protein family HMM PF02537%3B match to protein family HMM TIGR00494 gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2957 YpsIP31758_2958 YpsIP31758_2958 YpsIP31758_2958 3330068 3330277 - cold shock DNA-binding domain protein identified by match to protein family HMM PF00313 gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2958 YpsIP31758_2959 YpsIP31758_2959 YpsIP31758_2959 3330553 3331035 + cold-shock DNA-binding domain protein identified by match to protein family HMM PF00313 gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2959 YpsIP31758_2960 YpsIP31758_2960 YpsIP31758_2960 3331325 3331915 - transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00196 gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2960 YpsIP31758_2961 YpsIP31758_2961 YpsIP31758_2961 3332365 3333330 + putative membrane protein gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2961 YpsIP31758_2962 YpsIP31758_2962 YpsIP31758_2962 3333407 3333604 + hypothetical protein identified by glimmer%3B putative gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2962 YpsIP31758_2963 YpsIP31758_2963 YpsIP31758_2963 3333710 3333904 - conserved hypothetical protein gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2963 YpsIP31758_2964 YpsIP31758_2964 YpsIP31758_2964 3334347 3334634 + antibiotic biosynthesis monooxygenase domain protein identified by match to protein family HMM PF03992 gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2964 YpsIP31758_2965 YpsIP31758_2965 YpsIP31758_2965 3334650 3336440 - heavy metal ABC transporter (HMT) family%2C permease protein/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2965 YpsIP31758_2966 YpsIP31758_2966 YpsIP31758_2966 3336505 3336807 + hypothetical protein identified by glimmer%3B putative gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2966 YpsIP31758_2967 YpsIP31758_2967 YpsIP31758_2967 3337010 3337825 - putative myo-inositol catabolism protein IolB identified by similarity to SP:P42413%3B match to protein family HMM PF06845 gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2967 YpsIP31758_2968 YpsIP31758_2968 YpsIP31758_2968 3337835 3338755 - AP endonuclease%2C family 2 identified by match to protein family HMM PF01261 gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2968 YpsIP31758_2969 YpsIP31758_2969 YpsIP31758_2969 3338854 3340818 - kinase%2C pfkB family identified by match to protein family HMM PF00294 gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2969 YpsIP31758_2970 YpsIP31758_2970 YpsIP31758_2970 3340873 3342006 - oxidoreductase%2C Gfo/Idh/MocA family identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2970 YpsIP31758_2971 YpsIP31758_2971 rbsC5 rbsC5 3342030 3343058 - ribose ABC transporter%2C permease protein identified by similarity to SP:P36948%3B match to protein family HMM PF02653 gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2971 YpsIP31758_2972 YpsIP31758_2972 rbsA4 rbsA4 3343070 3344617 - ribose ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2972 YpsIP31758_2973 YpsIP31758_2973 rbsB4 rbsB4 3344666 3345595 - ribose ABC transporter%2C periplasmic ribose-binding protein identified by similarity to SP:P36949%3B match to protein family HMM PF00532 gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2973 YpsIP31758_2974 YpsIP31758_2974 YpsIP31758_2974 3345685 3346671 - oxidoreductase%2C NAD-binding identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2974 YpsIP31758_2975 YpsIP31758_2975 YpsIP31758_2975 3346832 3346981 - hypothetical protein identified by glimmer%3B putative gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2975 YpsIP31758_2976 YpsIP31758_2976 YpsIP31758_2976 3346965 3348911 - thiamine pyrophosphate-dependent enzyme identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776 gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2976 YpsIP31758_2977 YpsIP31758_2977 mmsA mmsA 3348925 3350451 - methylmalonate-semialdehyde dehydrogenase identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01722 gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2977 YpsIP31758_2978 YpsIP31758_2978 YpsIP31758_2978 3350778 3351632 + transcriptional regulator%2C RpiR family identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418 gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2978 YpsIP31758_2979 YpsIP31758_2979 YpsIP31758_2979 3352172 3358168 + alpha-2-macroglobulin family domain protein identified by match to protein family HMM PF01835%3B match to protein family HMM PF07703 gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2979 YpsIP31758_2980 YpsIP31758_2980 pbpC pbpC 3358225 3360588 + penicillin-binding protein 1C identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM PF06832%3B match to protein family HMM TIGR02073 gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2980 YpsIP31758_2981 YpsIP31758_2981 YpsIP31758_2981 3360801 3361046 - Sugar fermentation stimulation protein B identified by similarity to SP:P0ACH1 gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2981 YpsIP31758_2982 YpsIP31758_2982 YpsIP31758_2982 3361719 3362582 + conserved hypothetical protein identified by similarity to GB:CAG76573.1 gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2982 YpsIP31758_2983 YpsIP31758_2983 YpsIP31758_2983 3363081 3363560 - conserved hypothetical protein identified by similarity to GB:CAG76570.1%3B match to protein family HMM PF05638%3B match to protein family HMM TIGR03344 gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2983 YpsIP31758_2984 YpsIP31758_2984 YpsIP31758_2984 3363584 3363835 - hypothetical protein identified by glimmer%3B putative gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2984 YpsIP31758_2985 YpsIP31758_2985 YpsIP31758_2985 3364922 3366838 + putative autotransporter protein identified by match to protein family HMM PF03212%3B match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2985 YpsIP31758_2986 YpsIP31758_2986 YpsIP31758_2986 3367373 3367696 + conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to RF:ZP_00854036.1 pseudogene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2986 YpsIP31758_2987 YpsIP31758_2987 YpsIP31758_2987 3367756 3367938 + conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to RF:ZP_00854036.1 pseudogene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2987 YpsIP31758_2988 YpsIP31758_2988 YpsIP31758_2988 3367953 3369074 - cupin family protein identified by match to protein family HMM PF08007 gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2988 YpsIP31758_2989 YpsIP31758_2989 YpsIP31758_2989 3369165 3369338 - conserved domain protein identified by similarity to GB:AAU48415.1 gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2989 YpsIP31758_2990 YpsIP31758_2990 YpsIP31758_2990 3369369 3370241 - RNA pseudouridine synthase family protein identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2990 YpsIP31758_2991 YpsIP31758_2991 YpsIP31758_2991 3370467 3370628 + hypothetical protein identified by glimmer%3B putative gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2991 YpsIP31758_2992 YpsIP31758_2992 YpsIP31758_2992 3370664 3372871 + putative membrane protein gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2992 YpsIP31758_2993 YpsIP31758_2993 YpsIP31758_2993 3372864 3373394 + conserved hypothetical protein identified by similarity to GB:CAH20296.1 gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2993 YpsIP31758_2994 YpsIP31758_2994 YpsIP31758_2994 3373550 3375931 + glycosyl hydrolase%2C family 3 identified by match to protein family HMM PF00933%3B match to protein family HMM PF01915 gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2994 YpsIP31758_2995 YpsIP31758_2995 YpsIP31758_2995 3376010 3377638 - conserved domain protein identified by similarity to GB:AAO35723.1 gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2995 YpsIP31758_2996 YpsIP31758_2996 YpsIP31758_2996 3377635 3377760 - hypothetical protein identified by glimmer%3B putative gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2996 YpsIP31758_2997 YpsIP31758_2997 YpsIP31758_2997 3377795 3377938 - hypothetical protein identified by glimmer%3B putative gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2997 YpsIP31758_2998 YpsIP31758_2998 YpsIP31758_2998 3378111 3378962 + oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2998 YpsIP31758_2999 YpsIP31758_2999 YpsIP31758_2999 3378988 3379977 + oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_2999 YpsIP31758_3000 YpsIP31758_3000 YpsIP31758_3000 3380032 3380925 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3000 YpsIP31758_3001 YpsIP31758_3001 YpsIP31758_3001 3382647 3383051 - hypothetical protein identified by glimmer%3B putative gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3001 YpsIP31758_3002 YpsIP31758_3002 YpsIP31758_3002 3383033 3384352 - PAP2 family phosphatase identified by match to protein family HMM PF00782%3B match to protein family HMM PF01569 gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3002 YpsIP31758_3003 YpsIP31758_3003 YpsIP31758_3003 3384345 3386108 - conserved hypothetical protein identified by similarity to GB:CAC93047.1 gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3003 YpsIP31758_3004 YpsIP31758_3004 YpsIP31758_3004 3386105 3386737 - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553 gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3004 YpsIP31758_3005 YpsIP31758_3005 cdsA2 cdsA2 3386747 3387676 - phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3005 YpsIP31758_3006 YpsIP31758_3006 YpsIP31758_3006 3387669 3388265 - CDP-alcohol phosphatidyltransferase family protein identified by match to protein family HMM PF01066 gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3006 YpsIP31758_3007 YpsIP31758_3007 YpsIP31758_3007 3388304 3388456 - conserved hypothetical protein identified by similarity to GB:CAE15597.1 gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3007 YpsIP31758_3008 YpsIP31758_3008 YpsIP31758_3008 3388498 3388674 - hypothetical protein identified by glimmer%3B putative gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3008 YpsIP31758_3009 YpsIP31758_3009 YpsIP31758_3009 3389115 3389231 + hypothetical protein identified by glimmer%3B putative gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3009 YpsIP31758_3010 YpsIP31758_3010 YpsIP31758_3010 3389450 3389788 + hypothetical protein identified by glimmer%3B putative gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3010 YpsIP31758_3011 YpsIP31758_3011 YpsIP31758_3011 3389773 3390420 + conserved domain protein identified by similarity to GB:CAG76685.1 gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3011 YpsIP31758_3012 YpsIP31758_3012 folD folD 3391543 3392409 + FolD bifunctional protein identified by similarity to SP:P24186%3B match to protein family HMM PF00763%3B match to protein family HMM PF02882 gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3012 YpsIP31758_3013 YpsIP31758_3013 YpsIP31758_3013 3392424 3392636 + conserved hypothetical protein identified by similarity to GB:AAV78073.1 gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3013 YpsIP31758_3014 YpsIP31758_3014 cysS cysS 3392858 3394243 - cysteinyl-tRNA synthetase identified by similarity to SP:P21888%3B match to protein family HMM PF01406%3B match to protein family HMM TIGR00435 gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3014 YpsIP31758_3015 YpsIP31758_3015 ppiB ppiB 3394454 3394948 + peptidyl-prolyl cis-trans isomerase B identified by similarity to SP:P23869%3B match to protein family HMM PF00160 gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3015 YpsIP31758_3016 YpsIP31758_3016 lpxH lpxH 3394959 3395681 + UDP-2%2C3-diacylglucosamine hydrolase identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR01854 gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3016 YpsIP31758_3017 YpsIP31758_3017 purE purE 3395977 3396501 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162 gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3017 YpsIP31758_3018 YpsIP31758_3018 purK purK 3396498 3397562 + phosphoribosylaminoimidazole carboxylase%2C ATPase subunit identified by match to protein family HMM PF02222%3B match to protein family HMM TIGR01161 gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3018 YpsIP31758_3019 YpsIP31758_3019 YpsIP31758_3019 3397606 3400035 - efflux ABC transporter%2C permease protein identified by match to protein family HMM PF02687 gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3019 YpsIP31758_3020 YpsIP31758_3020 YpsIP31758_3020 3400032 3400718 - putatitve ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3020 YpsIP31758_3021 YpsIP31758_3021 YpsIP31758_3021 3400689 3401324 + GDSL-like lipase/acylhydrolase family protein identified by match to protein family HMM PF00657 gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3021 YpsIP31758_3022 YpsIP31758_3022 YpsIP31758_3022 3401711 3402487 + oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106 gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3022 YpsIP31758_3023 YpsIP31758_3023 YpsIP31758_3023 3402564 3403433 + putative thioredoxin identified by match to protein family HMM PF00085 gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3023 YpsIP31758_3024 YpsIP31758_3024 YpsIP31758_3024 3403628 3404542 + SPFH/band 7 family protein identified by match to protein family HMM PF01145 gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3024 YpsIP31758_3025 YpsIP31758_3025 YpsIP31758_3025 3404545 3404994 + nodulation efficiency protein D identified by match to protein family HMM PF01957 gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3025 YpsIP31758_3026 YpsIP31758_3026 cueR cueR 3405161 3405580 - Cu(I)-responsive transcriptional regulator identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR02044 gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3026 YpsIP31758_3027 YpsIP31758_3027 YpsIP31758_3027 3405783 3408650 + copper-translocating P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3027 YpsIP31758_3028 YpsIP31758_3028 YpsIP31758_3028 3408922 3409731 + GumN family protein identified by match to protein family HMM PF07446 gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3028 YpsIP31758_3029 YpsIP31758_3029 ybaK ybaK 3409994 3410473 + ybaK/ebsC protein identified by similarity to SP:P0AAR3%3B match to protein family HMM PF04073%3B match to protein family HMM TIGR00011 gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3029 YpsIP31758_3030 YpsIP31758_3030 YpsIP31758_3030 3410656 3410796 + hypothetical protein identified by glimmer%3B putative gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3030 YpsIP31758_3031 YpsIP31758_3031 YpsIP31758_3031 3410765 3411049 + conserved hypothetical protein identified by similarity to RF:NP_992217.1 gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3031 YpsIP31758_3032 YpsIP31758_3032 ushA ushA 3411153 3412808 - protein ushA identified by similarity to SP:P07024%3B match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3032 YpsIP31758_3033 YpsIP31758_3033 fsr fsr 3413089 3414303 + fosmidomycin resistance protein identified by similarity to SP:P52067%3B match to protein family HMM PF07690 gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3033 YpsIP31758_3034 YpsIP31758_3034 YpsIP31758_3034 3414538 3416229 + transporter%2C monovalent cation:proton antiporter-2 (CPA2) family identified by match to protein family HMM PF00999%3B match to protein family HMM PF02254%3B match to protein family HMM TIGR00932 gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3034 YpsIP31758_3035 YpsIP31758_3035 gsk gsk 3416326 3417630 - inosine-guanosine kinase identified by similarity to SP:P22937%3B match to protein family HMM PF00294 gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3035 YpsIP31758_3036 YpsIP31758_3036 wzz wzz 3417834 3418985 - chain length determinant family protein Wzz identified by match to protein family HMM PF02706 gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3036 YpsIP31758_3037 YpsIP31758_3037 manB1 manB1 3419033 3420406 - phosphomannomutase identified by similarity to SP:P37755%3B match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880 gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3037 YpsIP31758_3038 YpsIP31758_3038 YpsIP31758_3038 3420411 3421154 - glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3038 YpsIP31758_3039 YpsIP31758_3039 manC manC 3421157 3422563 - mannose-1-phosphate guanylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM PF01050%3B match to protein family HMM PF07883%3B match to protein family HMM TIGR01479 gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3039 YpsIP31758_3040 YpsIP31758_3040 fcl fcl 3422736 3423701 - GDP-L-fucose synthetase identified by similarity to SP:P32055%3B match to protein family HMM PF01370 gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3040 YpsIP31758_3041 YpsIP31758_3041 gmd gmd 3423707 3424828 - GDP-mannose 4%2C6-dehydratase identified by match to protein family HMM PF01370%3B match to protein family HMM TIGR01472 gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3041 YpsIP31758_3042 YpsIP31758_3042 YpsIP31758_3042 3424844 3425857 - glycosyl transferase WbyK%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3042 YpsIP31758_3043 YpsIP31758_3043 wzy wzy 3426106 3427326 - O-antigen biosynthesis protein Wxy gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3043 YpsIP31758_3044 YpsIP31758_3044 YpsIP31758_3044 3427323 3428465 - putative mannosyltransferase WbyJ identified by similarity to GB:AAK80991.1 gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3044 YpsIP31758_3045 YpsIP31758_3045 YpsIP31758_3045 3428637 3429620 - glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3045 YpsIP31758_3046 YpsIP31758_3046 YpsIP31758_3046 3429631 3430974 - putative O-unit flippase protein Wzx gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3046 YpsIP31758_3047 YpsIP31758_3047 wbyH wbyH 3431173 3432456 - O-antigen synthesis protein WbyH identified by similarity to GB:AAN23051.1 gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3047 YpsIP31758_3048 YpsIP31758_3048 prt prt 3432457 3433314 - CDP-paratose synthetase identified by match to protein family HMM PF01370 gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3048 YpsIP31758_3049 YpsIP31758_3049 ddhC ddhC 3433351 3434664 - CDP-4-keto-6-deoxy-D-glucose-3-dehydrase identified by match to protein family HMM PF01041 gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3049 YpsIP31758_3050 YpsIP31758_3050 ddhB ddhB 3434682 3435857 - CDP-glucose 4%2C6-dehydratase identified by match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR02622 gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3050 YpsIP31758_3051 YpsIP31758_3051 ddhA ddhA 3435760 3436533 - glucose-1-phosphate cytidylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02623 gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3051 YpsIP31758_3052 YpsIP31758_3052 ddhD ddhD 3436571 3437560 - CDP-6-deoxy-delta-3%2C4-glucoseen reductase identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3052 YpsIP31758_3053 YpsIP31758_3053 hemH hemH 3438158 3439120 - ferrochelatase identified by match to protein family HMM PF00762%3B match to protein family HMM TIGR00109 gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3053 YpsIP31758_3054 YpsIP31758_3054 adk adk 3439210 3439854 - adenylate kinase identified by similarity to SP:P0A1V4%3B match to protein family HMM PF00406%3B match to protein family HMM PF05191%3B match to protein family HMM TIGR01351 gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3054 YpsIP31758_3055 YpsIP31758_3055 htpG htpG 3440081 3441949 - chaperone protein HtpG identified by similarity to SP:P0A6Z3%3B match to protein family HMM PF00183%3B match to protein family HMM PF02518 gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3055 YpsIP31758_3056 YpsIP31758_3056 YpsIP31758_3056 3441974 3442132 - hypothetical protein identified by glimmer%3B putative gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3056 YpsIP31758_3057 YpsIP31758_3057 recR recR 3442147 3442752 - recombination protein RecR identified by match to protein family HMM PF01751%3B match to protein family HMM PF02132%3B match to protein family HMM TIGR00615 gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3057 YpsIP31758_3058 YpsIP31758_3058 YpsIP31758_3058 3442752 3443084 - conserved hypothetical protein TIGR00103 identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103 gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3058 YpsIP31758_3059 YpsIP31758_3059 dnaX dnaX 3443140 3445116 - DNA polymerase III%2C subunits gamma and tau identified by match to protein family HMM PF00004%3B match to protein family HMM TIGR02397 gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3059 YpsIP31758_3060 YpsIP31758_3060 apt apt 3445772 3446335 - adenine phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01090 gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3060 YpsIP31758_3061 YpsIP31758_3061 YpsIP31758_3061 3446768 3446956 + hypothetical protein identified by glimmer%3B putative gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3061 YpsIP31758_3062 YpsIP31758_3062 priC priC 3447155 3447691 + primosomal replication protein n'' identified by similarity to SP:P23862%3B match to protein family HMM PF07445 gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3062 YpsIP31758_3063 YpsIP31758_3063 YpsIP31758_3063 3447862 3448017 + conserved hypothetical protein identified by similarity to GB:CAE16216.1 gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3063 YpsIP31758_3064 YpsIP31758_3064 kefA kefA 3448357 3451719 - potassium efflux system KefA identified by similarity to SP:P77338%3B match to protein family HMM PF00924 gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3064 YpsIP31758_3065 YpsIP31758_3065 YpsIP31758_3065 3452015 3452368 - DsrE family protein identified by match to protein family HMM PF02635 gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3065 YpsIP31758_3066 YpsIP31758_3066 acrR acrR 3452381 3453037 - transcriptional regulator AcrR identified by similarity to SP:P0ACS9%3B match to protein family HMM PF00440 gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3066 YpsIP31758_3067 YpsIP31758_3067 acrA acrA 3453182 3454369 + acriflavine resistance protein A identified by similarity to SP:P0AE06%3B match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3067 YpsIP31758_3068 YpsIP31758_3068 acrB acrB 3454386 3457538 + acriflavine resistance protein B identified by similarity to SP:P31224%3B match to protein family HMM PF00873%3B match to protein family HMM TIGR00915 gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3068 YpsIP31758_3069 YpsIP31758_3069 YpsIP31758_3069 3457724 3457984 + ribosomal protein L31P family identified by match to protein family HMM PF01197 gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3069 YpsIP31758_3070 YpsIP31758_3070 rpmJ rpmJ 3458000 3458143 + ribosomal protein L36 identified by match to protein family HMM PF00444%3B match to protein family HMM TIGR01022 gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3070 YpsIP31758_3071 YpsIP31758_3071 YpsIP31758_3071 3459017 3459370 + conserved hypothetical protein identified by similarity to GB:ABB41514.1 gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3071 YpsIP31758_3072 YpsIP31758_3072 YpsIP31758_3072 3459529 3459897 + conserved hypothetical protein identified by similarity to SP:P0AAR0 gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3072 YpsIP31758_3073 YpsIP31758_3073 YpsIP31758_3073 3459946 3460149 + haemolysin expression modulating protein identified by similarity to SP:P0ACE3%3B match to protein family HMM PF05321 gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3073 YpsIP31758_3074 YpsIP31758_3074 YpsIP31758_3074 3460881 3461444 + methylated-DNA-[protein]-cysteine S-methyltransferase family protein identified by match to protein family HMM PF01035%3B match to protein family HMM TIGR00589 gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3074 YpsIP31758_3075 YpsIP31758_3075 YpsIP31758_3075 3461580 3462101 - putative lipoprotein gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3075 YpsIP31758_3076 YpsIP31758_3076 tesB tesB 3462358 3463218 + acyl-CoA thioesterase II identified by match to protein family HMM PF02551%3B match to protein family HMM TIGR00189 gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3076 YpsIP31758_3077 YpsIP31758_3077 amt amt 3463478 3464770 - ammonium transporter identified by match to protein family HMM PF00909%3B match to protein family HMM TIGR00836 gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3077 YpsIP31758_3078 YpsIP31758_3078 glnK glnK 3464807 3465145 - glutamine synthetase regulation protein identified by match to protein family HMM PF00543 gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3078 YpsIP31758_3079 YpsIP31758_3079 mdlB mdlB 3465580 3467403 - multidrug ABC transporter%2C permease protein/ATP-binding protein MdlB identified by similarity to SP:P0AAG5%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3079 YpsIP31758_3080 YpsIP31758_3080 mdlA mdlA 3467396 3469162 - multidrug ABC transporter%2C permease protein/ATP-binding protein MdlA identified by similarity to SP:P77265%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3080 YpsIP31758_3081 YpsIP31758_3081 YpsIP31758_3081 3469264 3469725 - transcriptional regulator%2C AsnC family identified by match to protein family HMM PF01037 gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3081 YpsIP31758_3082 YpsIP31758_3082 YpsIP31758_3082 3469851 3470891 + pyridoxal-phosphate dependent enzyme identified by match to protein family HMM PF00291 gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3082 YpsIP31758_3083 YpsIP31758_3083 YpsIP31758_3083 3471103 3471924 - HAD hydrolase%2C IIB family identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3083 YpsIP31758_3084 YpsIP31758_3084 YpsIP31758_3084 3472029 3473732 + putative ABC transporter%2C periplasmic binding protein identified by match to protein family HMM PF00496 gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3084 YpsIP31758_3085 YpsIP31758_3085 queC queC 3474029 3474727 + queuosine biosynthesis protein QueC identified by similarity to SP:P77756%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00364 gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3085 YpsIP31758_3086 YpsIP31758_3086 YpsIP31758_3086 3474813 3475220 - thioesterase family protein identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00051 gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3086 YpsIP31758_3087 YpsIP31758_3087 YpsIP31758_3087 3475574 3476020 - putative competence protein ComEA identified by match to protein family HMM TIGR00426 gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3087 YpsIP31758_3088 YpsIP31758_3088 YpsIP31758_3088 3476160 3478046 - peptidyl-prolyl cis-trans isomerase identified by match to protein family HMM PF00639 gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3088 YpsIP31758_3089 YpsIP31758_3089 hupB hupB 3478347 3478619 - DNA-binding protein HU-beta identified by similarity to SP:P0ACF4%3B match to protein family HMM PF00216 gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3089 YpsIP31758_3090 YpsIP31758_3090 lon lon 3478837 3481191 - ATP-dependent protease La identified by match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763 gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3090 YpsIP31758_3091 YpsIP31758_3091 clpX clpX 3481386 3482657 - ATP-dependent Clp protease%2C ATP-binding subunit ClpX identified by match to protein family HMM PF06689%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00382 gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3091 YpsIP31758_3092 YpsIP31758_3092 clpP clpP 3482863 3483486 - ATP-dependent Clp protease%2C proteolytic subunit ClpP identified by match to protein family HMM PF00574%3B match to protein family HMM TIGR00493 gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3092 YpsIP31758_3093 YpsIP31758_3093 tig tig 3483948 3485252 - trigger factor identified by match to protein family HMM PF00254%3B match to protein family HMM PF05697%3B match to protein family HMM PF05698%3B match to protein family HMM TIGR00115 gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3093 YpsIP31758_3094 YpsIP31758_3094 bolA bolA 3485669 3485989 - bolA protein identified by similarity to SP:P0ABE4%3B match to protein family HMM PF01722 gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3094 YpsIP31758_3095 YpsIP31758_3095 YpsIP31758_3095 3486338 3486916 + putative lipoprotein identified by match to protein family HMM PF03923 gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3095 YpsIP31758_3096 YpsIP31758_3096 YpsIP31758_3096 3487033 3488511 + permease%2C AmpG family identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00901 gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3096 YpsIP31758_3097 YpsIP31758_3097 YpsIP31758_3097 3488803 3489570 + putative membrane protein identified by similarity to SP:P45564%3B match to protein family HMM PF07135 gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3097 YpsIP31758_3098 YpsIP31758_3098 cyoA cyoA 3489940 3490896 + cytochrome o ubiquinol oxidase%2C subunit II identified by match to protein family HMM PF00116%3B match to protein family HMM PF06481%3B match to protein family HMM TIGR01433 gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3098 YpsIP31758_3099 YpsIP31758_3099 cyoB cyoB 3490901 3492892 + cytochrome o ubiquinol oxidase%2C subunit I identified by match to protein family HMM PF00115%3B match to protein family HMM TIGR02843 gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3099 YpsIP31758_3100 YpsIP31758_3100 cyoC cyoC 3492882 3493496 + cytochrome o ubiquinol oxidase%2C subunit III identified by match to protein family HMM PF00510%3B match to protein family HMM TIGR02842 gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3100 YpsIP31758_3101 YpsIP31758_3101 cyoD cyoD 3493496 3493828 + cytochrome o ubiquinol oxidase%2C subunit IV identified by match to protein family HMM PF03626%3B match to protein family HMM TIGR02847 gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3101 YpsIP31758_3102 YpsIP31758_3102 cyoE cyoE 3493842 3494729 + protoheme IX farnesyltransferase identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR01473 gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3102 YpsIP31758_3103 YpsIP31758_3103 YpsIP31758_3103 3495213 3496577 + transporter%2C major facilitator family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3103 YpsIP31758_3104 YpsIP31758_3104 YpsIP31758_3104 3496701 3497192 - conserved hypothetical protein identified by similarity to SP:P0A8E7%3B match to protein family HMM PF04461 gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3104 YpsIP31758_3105 YpsIP31758_3105 YpsIP31758_3105 3497176 3497298 + hypothetical protein identified by glimmer%3B putative gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3105 YpsIP31758_3106 YpsIP31758_3106 panE panE 3497424 3498335 + 2-dehydropantoate 2-reductase identified by match to protein family HMM PF02558%3B match to protein family HMM TIGR00745 gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3106 YpsIP31758_3107 YpsIP31758_3107 YpsIP31758_3107 3498298 3498888 + DJ-1 family protein identified by match to protein family HMM PF01965%3B match to protein family HMM TIGR01383 gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3107 YpsIP31758_3108 YpsIP31758_3108 thiI thiI 3498956 3500407 - thiamine biosynthesis/tRNA modification protein ThiI identified by match to protein family HMM PF02568%3B match to protein family HMM PF02926%3B match to protein family HMM TIGR00342 gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3108 YpsIP31758_3109 YpsIP31758_3109 YpsIP31758_3109 3500505 3500675 - hypothetical protein identified by glimmer%3B putative gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3109 YpsIP31758_3110 YpsIP31758_3110 xseB xseB 3500757 3501011 + exodeoxyribonuclease VII%2C small subunit identified by match to protein family HMM PF02609%3B match to protein family HMM TIGR01280 gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3110 YpsIP31758_3111 YpsIP31758_3111 ispA ispA 3501016 3501936 + geranyltranstransferase identified by similarity to SP:P22939%3B match to protein family HMM PF00348 gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3111 YpsIP31758_3112 YpsIP31758_3112 dxs dxs 3502108 3503967 + 1-deoxy-D-xylulose-5-phosphate synthase identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00204 gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3112 YpsIP31758_3113 YpsIP31758_3113 YpsIP31758_3113 3504108 3504593 - phosphatidylglycerophosphatase A identified by match to protein family HMM PF04608 gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3113 YpsIP31758_3114 YpsIP31758_3114 thiL thiL 3504586 3505575 - thiamine-monophosphate kinase identified by match to protein family HMM PF02769%3B match to protein family HMM TIGR01379 gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3114 YpsIP31758_3115 YpsIP31758_3115 nusB nusB 3505816 3506232 - transcription antitermination factor NusB identified by match to protein family HMM PF01029%3B match to protein family HMM TIGR01951 gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3115 YpsIP31758_3116 YpsIP31758_3116 ribH ribH 3506253 3506723 - 6%2C7-dimethyl-8-ribityllumazine synthase identified by match to protein family HMM PF00885%3B match to protein family HMM TIGR00114 gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3116 YpsIP31758_3117 YpsIP31758_3117 ribD ribD 3506859 3507968 - riboflavin biosynthesis protein RibD identified by match to protein family HMM PF00383%3B match to protein family HMM PF01872%3B match to protein family HMM TIGR00227%3B match to protein family HMM TIGR00326 gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3117 YpsIP31758_3118 YpsIP31758_3118 nrdR nrdR 3508100 3508549 - transcriptional regulator%2C NrdR family identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244 gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3118 YpsIP31758_3119 YpsIP31758_3119 YpsIP31758_3119 3508620 3509942 - conserved hypothetical protein identified by similarity to RF:NP_048227.1 gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3119 YpsIP31758_3120 YpsIP31758_3120 secF secF 3510195 3511163 - protein-export membrane protein SecF identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966 gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3120 YpsIP31758_3121 YpsIP31758_3121 secD secD 3511174 3513021 - protein-export membrane protein SecD identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129 gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3121 YpsIP31758_3122 YpsIP31758_3122 yajC yajC 3513049 3513384 - preprotein translocase%2C YajC subunit identified by match to protein family HMM PF02699%3B match to protein family HMM TIGR00739 gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3122 YpsIP31758_3123 YpsIP31758_3123 tgt tgt 3513496 3514620 - queuine tRNA-ribosyltransferase identified by match to protein family HMM PF01702%3B match to protein family HMM TIGR00430%3B match to protein family HMM TIGR00449 gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3123 YpsIP31758_3124 YpsIP31758_3124 queA queA 3514713 3515783 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase identified by match to protein family HMM PF02547%3B match to protein family HMM TIGR00113 gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3124 YpsIP31758_3125 YpsIP31758_3125 acpH acpH 3515986 3516567 + acyl carrier protein phosphodiesterase identified by similarity to SP:P21515%3B match to protein family HMM PF04336 gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3125 YpsIP31758_3126 YpsIP31758_3126 YpsIP31758_3126 3516906 3517508 + antioxidant%2C AhpC/TSA family identified by match to protein family HMM PF00578 gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3126 YpsIP31758_3127 YpsIP31758_3127 YpsIP31758_3127 3517671 3518180 + IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3127 YpsIP31758_3128 YpsIP31758_3128 ggt ggt 3518608 3520371 + gamma-glutamyltransferase identified by match to protein family HMM PF01019%3B match to protein family HMM TIGR00066 gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3128 YpsIP31758_3129 YpsIP31758_3129 YpsIP31758_3129 3520617 3521297 - oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3129 YpsIP31758_3130 YpsIP31758_3130 YpsIP31758_3130 3520507 3520641 + hypothetical protein identified by glimmer%3B putative gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3130 YpsIP31758_3131 YpsIP31758_3131 malZ malZ 3521452 3523281 - maltodextrin glucosidase identified by similarity to SP:P21517%3B match to protein family HMM PF00128 gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3131 YpsIP31758_3132 YpsIP31758_3132 proY proY 3523859 3525253 - proline-specific permease ProY identified by similarity to SP:P37460%3B match to protein family HMM PF00324 gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3132 YpsIP31758_3133 YpsIP31758_3133 brnQ brnQ 3525329 3526648 - branched-chain amino acid transport system II carrier protein identified by match to protein family HMM PF05525%3B match to protein family HMM TIGR00796 gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3133 YpsIP31758_3134 YpsIP31758_3134 YpsIP31758_3134 3527122 3528168 - phosphate-binding protein identified by match to protein family HMM TIGR02136 gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3134 YpsIP31758_3135 YpsIP31758_3135 phoR phoR 3528190 3529506 - phosphate regulon sensor kinase PhoR identified by match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR02966 gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3135 YpsIP31758_3136 YpsIP31758_3136 phoB phoB 3529531 3530220 - phosphate regulon transcriptional regulatory protein PhoB identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486%3B match to protein family HMM TIGR02154 gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3136 YpsIP31758_3137 YpsIP31758_3137 YpsIP31758_3137 3530250 3530369 - hypothetical protein identified by glimmer%3B putative gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3137 YpsIP31758_3138 YpsIP31758_3138 sbcD sbcD 3530488 3531732 + nuclease SbcCD%2C D subunit identified by similarity to SP:P0AG76%3B match to protein family HMM PF00149%3B match to protein family HMM TIGR00619 gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3138 YpsIP31758_3139 YpsIP31758_3139 sbcC sbcC 3531729 3535418 + nuclease SbcCD%2C C subunit identified by similarity to SP:P13458%3B match to protein family HMM PF02463 gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3139 YpsIP31758_3140 YpsIP31758_3140 YpsIP31758_3140 3535887 3536801 - putative manno(fructo)kinase identified by similarity to SP:P23917%3B match to protein family HMM PF00480 gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3140 YpsIP31758_3141 YpsIP31758_3141 rdgC rdgC 3537134 3538045 + recombination-associated protein RdgC identified by similarity to SP:P36767%3B match to protein family HMM PF04381 gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3141 YpsIP31758_3142 YpsIP31758_3142 YpsIP31758_3142 3538274 3538561 - conserved hypothetical protein identified by similarity to SP:Q66DY1%3B match to protein family HMM PF06865 gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3142 YpsIP31758_3143 YpsIP31758_3143 aroL aroL 3539058 3539582 - shikimate kinase 2 identified by similarity to SP:P10880%3B match to protein family HMM PF01202 gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3143 YpsIP31758_3144 YpsIP31758_3144 YpsIP31758_3144 3539829 3540386 - putative methyltransferase identified by similarity to GB:CAH20150.1 gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3144 YpsIP31758_3145 YpsIP31758_3145 YpsIP31758_3145 3541117 3541731 - conserved hypothetical protein identified by similarity to SP:P30866%3B match to protein family HMM PF08241 gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3145 YpsIP31758_3146 YpsIP31758_3146 YpsIP31758_3146 3541695 3541826 - hypothetical protein identified by glimmer%3B putative gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3146 YpsIP31758_3147 YpsIP31758_3147 YpsIP31758_3147 3541884 3542138 - hypothetical protein identified by glimmer%3B putative gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3147 YpsIP31758_3148 YpsIP31758_3148 YpsIP31758_3148 3542336 3543085 - pilZ family protein identified by match to protein family HMM PF07238%3B match to protein family HMM PF07317 gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3148 YpsIP31758_3149 YpsIP31758_3149 proA proA 3543422 3544681 - gamma-glutamyl phosphate reductase identified by match to protein family HMM TIGR00407 gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3149 YpsIP31758_3150 YpsIP31758_3150 proB proB 3544691 3545794 - glutamate 5-kinase identified by match to protein family HMM PF00696%3B match to protein family HMM PF01472%3B match to protein family HMM TIGR01027 gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3150 YpsIP31758_3151 YpsIP31758_3151 crl crl 3545971 3546372 - transcriptional activator Crl identified by similarity to SP:P24251%3B match to protein family HMM PF07417 gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3151 YpsIP31758_3152 YpsIP31758_3152 yafA yafA 3546432 3547679 - esterase YafA identified by similarity to SP:P04335%3B match to protein family HMM PF06500 gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3152 YpsIP31758_3153 YpsIP31758_3153 gpt gpt 3547806 3548264 - xanthine phosphoribosyltransferase identified by similarity to SP:P0A9M5%3B match to protein family HMM PF00156 gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3153 YpsIP31758_3154 YpsIP31758_3154 YpsIP31758_3154 3549193 3550797 + chitin binding domain protein identified by match to protein family HMM PF00801%3B match to protein family HMM PF03067 gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3154 YpsIP31758_3155 YpsIP31758_3155 YpsIP31758_3155 3551256 3552167 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126 gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3155 YpsIP31758_3156 YpsIP31758_3156 pepD pepD 3554042 3555502 + aminoacyl-histidine dipeptidase identified by similarity to SP:P15288%3B match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01893 gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3156 YpsIP31758_3157 YpsIP31758_3157 dinB dinB 3555616 3556674 - DNA polymerase IV identified by similarity to SP:Q47155%3B match to protein family HMM PF00817 gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3157 YpsIP31758_3158 YpsIP31758_3158 YpsIP31758_3158 3557045 3557977 + glycerophosphoryl diester phosphodiesterase family protein identified by match to protein family HMM PF03009 gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3158 YpsIP31758_3159 YpsIP31758_3159 YpsIP31758_3159 3558222 3558449 - conserved hypothetical protein identified by similarity to GB:CAE13497.1%3B match to protein family HMM PF04400 gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3159 YpsIP31758_3160 YpsIP31758_3160 YpsIP31758_3160 3558462 3559499 - putative thiamine biosynthesis lipoprotein apbE identified by similarity to SP:P41780%3B match to protein family HMM PF02424 gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3160 YpsIP31758_3161 YpsIP31758_3161 nqrF nqrF 3559525 3560748 - NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C F subunit identified by similarity to SP:Q56584%3B match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970%3B match to protein family HMM TIGR01941 gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3161 YpsIP31758_3162 YpsIP31758_3162 nqrE2 nqrE2 3560764 3561360 - NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit identified by similarity to SP:Q56589%3B match to protein family HMM PF02508%3B match to protein family HMM TIGR01940 gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3162 YpsIP31758_3163 YpsIP31758_3163 nqrD nqrD 3561367 3561996 - NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01939 gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3163 YpsIP31758_3164 YpsIP31758_3164 nqrC nqrC 3561989 3562789 - NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C C subunit identified by similarity to GB:BAA22912.1%3B match to protein family HMM PF04205%3B match to protein family HMM TIGR01938 gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3164 YpsIP31758_3165 YpsIP31758_3165 nqrB nqrB 3562779 3564020 - NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C B subunit identified by similarity to GB:BAA22911.1%3B match to protein family HMM PF03116%3B match to protein family HMM TIGR01937 gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3165 YpsIP31758_3166 YpsIP31758_3166 nqrA nqrA 3564024 3565367 - NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C A subunit identified by match to protein family HMM PF05896%3B match to protein family HMM TIGR01936 gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3166 YpsIP31758_3167 YpsIP31758_3167 YpsIP31758_3167 3565469 3565648 + hypothetical protein identified by glimmer%3B putative gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3167 YpsIP31758_3168 YpsIP31758_3168 YpsIP31758_3168 3566568 3567341 - class II glutamine amidotransferases domain protein identified by match to protein family HMM PF00310 gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3168 YpsIP31758_3169 YpsIP31758_3169 YpsIP31758_3169 3565863 3566603 + conserved hypothetical protein identified by match to protein family HMM PF06104 gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3169 YpsIP31758_3170 YpsIP31758_3170 gmhA1 gmhA1 3567544 3568125 - phosphoheptose isomerase identified by similarity to SP:Q8ZBY7%3B match to protein family HMM TIGR00441 gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3170 YpsIP31758_3171 YpsIP31758_3171 YpsIP31758_3171 3568365 3570812 + acyl-coenzyme A dehydrogenase domain protein identified by match to protein family HMM PF00441 gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3171 YpsIP31758_3172 YpsIP31758_3172 YpsIP31758_3172 3570984 3571730 - conserved domain protein identified by similarity to GB:AAX66617.1 gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3172 YpsIP31758_3173 YpsIP31758_3173 YpsIP31758_3173 3571732 3573585 - conserved hypothetical protein gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3173 YpsIP31758_3174 YpsIP31758_3174 YpsIP31758_3174 3573740 3579472 - haemagglutination domain protein identified by match to protein family HMM PF05860%3B match to protein family HMM TIGR01901 gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3174 YpsIP31758_3175 YpsIP31758_3175 YpsIP31758_3175 3579513 3581303 - putative lipoprotein gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3175 YpsIP31758_3176 YpsIP31758_3176 YpsIP31758_3176 3581283 3581396 + hypothetical protein identified by glimmer%3B putative gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3176 YpsIP31758_3177 YpsIP31758_3177 YpsIP31758_3177 3581505 3581618 + hypothetical protein identified by glimmer%3B putative gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3177 YpsIP31758_3178 YpsIP31758_3178 mtnK mtnK 3582506 3583729 - 5-methylthioribose kinase identified by similarity to SP:O31663%3B match to protein family HMM TIGR01767 gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3178 YpsIP31758_3179 YpsIP31758_3179 YpsIP31758_3179 3583925 3584965 + eIF-2B alpha/beta/delta family protein identified by match to protein family HMM PF01008%3B match to protein family HMM TIGR00512%3B match to protein family HMM TIGR00524 gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3179 YpsIP31758_3180 YpsIP31758_3180 YpsIP31758_3180 3585008 3585550 - dioxygenase%2C ARD/ARD' family identified by match to protein family HMM PF03079 gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3180 YpsIP31758_3181 YpsIP31758_3181 YpsIP31758_3181 3585675 3586364 - 2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR01691 gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3181 YpsIP31758_3182 YpsIP31758_3182 YpsIP31758_3182 3586361 3587029 - class II aldolase/adducin N-terminal domain protein identified by match to protein family HMM PF00596%3B match to protein family HMM TIGR03328 gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3182 YpsIP31758_3183 YpsIP31758_3183 YpsIP31758_3183 3587169 3588329 + aminotransferase%2C class I and II identified by match to protein family HMM PF00155 gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3183 YpsIP31758_3184 YpsIP31758_3184 YpsIP31758_3184 3588317 3589087 + hydrolase%2C carbon-nitrogen family identified by match to protein family HMM PF00795 gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3184 YpsIP31758_3185 YpsIP31758_3185 YpsIP31758_3185 3589188 3590471 - amidase%2C hydantoinase/carbamoylase family identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01879 gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3185 YpsIP31758_3186 YpsIP31758_3186 YpsIP31758_3186 3590471 3591826 - aminotransferase%2C class V identified by match to protein family HMM PF00266 gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3186 YpsIP31758_3187 YpsIP31758_3187 YpsIP31758_3187 3591858 3592604 - amino acid ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3187 YpsIP31758_3188 YpsIP31758_3188 YpsIP31758_3188 3592585 3593238 - amino acid ABC transporter%2C permease protein identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3188 YpsIP31758_3189 YpsIP31758_3189 YpsIP31758_3189 3593235 3593903 - amino acid ABC transporter%2C permease protein identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3189 YpsIP31758_3190 YpsIP31758_3190 YpsIP31758_3190 3593916 3594704 - amino acid ABC transporter%2C periplasmic amino acid-binding protein identified by match to protein family HMM PF00497 gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3190 YpsIP31758_3191 YpsIP31758_3191 YpsIP31758_3191 3595056 3596000 - transcriptional regulator%2C RpiR family identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418 gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3191 YpsIP31758_3192 YpsIP31758_3192 YpsIP31758_3192 3596072 3596230 - conserved hypothetical protein identified by similarity to GB:AAS60940.1 gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3192 YpsIP31758_3193 YpsIP31758_3193 YpsIP31758_3193 3596199 3596402 + conserved hypothetical protein identified by similarity to GB:CAG76396.1 gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3193 YpsIP31758_3194 YpsIP31758_3194 YpsIP31758_3194 3596399 3597796 + amidohydrolase%2C AtzE family identified by match to protein family HMM PF01425%3B match to protein family HMM TIGR02715 gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3194 YpsIP31758_3195 YpsIP31758_3195 YpsIP31758_3195 3597825 3598292 + conserved hypothetical protein identified by similarity to RF:YP_051588.1 gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3195 YpsIP31758_3196 YpsIP31758_3196 YpsIP31758_3196 3598295 3598471 + hypothetical protein identified by glimmer%3B putative gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3196 YpsIP31758_3197 YpsIP31758_3197 YpsIP31758_3197 3598519 3599718 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3197 YpsIP31758_3198 YpsIP31758_3198 YpsIP31758_3198 3599878 3600651 + putative azaleucine resistance protein AzlC identified by match to protein family HMM PF03591 gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3198 YpsIP31758_3199 YpsIP31758_3199 YpsIP31758_3199 3600648 3600989 + conserved hypothetical protein identified by similarity to GB:CAG76408.1 gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3199 YpsIP31758_3200 YpsIP31758_3200 mprA mprA 3601161 3601673 + transcriptional repressor MprA identified by similarity to SP:P0ACR9%3B match to protein family HMM PF01047 gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3200 YpsIP31758_3201 YpsIP31758_3201 emrA emrA 3602057 3603229 + multidrug resistance protein A identified by similarity to SP:P27303%3B match to protein family HMM PF00529%3B match to protein family HMM TIGR00998 gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3201 YpsIP31758_3202 YpsIP31758_3202 emrB emrB 3603268 3604803 + multidrug resistance protein B identified by similarity to SP:P0AEJ0%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00711 gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3202 YpsIP31758_3203 YpsIP31758_3203 YpsIP31758_3203 3604936 3606123 - RNA methyltransferase%2C TrmH family identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032 gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3203 YpsIP31758_3204 YpsIP31758_3204 trxC trxC 3606375 3606812 + thioredoxin 2 identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3204 YpsIP31758_3205 YpsIP31758_3205 YpsIP31758_3205 3606982 3607731 + DTW domain protein identified by match to protein family HMM PF03942 gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3205 YpsIP31758_3206 YpsIP31758_3206 YpsIP31758_3206 3607774 3610416 + putative acyl-CoA synthetase identified by similarity to SP:P76594%3B match to protein family HMM PF00583%3B match to protein family HMM PF02629 gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3206 YpsIP31758_3207 YpsIP31758_3207 pssA pssA 3610589 3611947 + CDP-diacylglycerol--serine O-phosphatidyltransferase identified by similarity to SP:P23830%3B match to protein family HMM PF00614 gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3207 YpsIP31758_3208 YpsIP31758_3208 YpsIP31758_3208 3612009 3612350 + putative lipoprotein identified by similarity to GB:CAC92508.1 gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3208 YpsIP31758_3212 YpsIP31758_3212 clpB clpB 3618389 3620962 - chaperone ClpB identified by similarity to SP:P63284%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728 gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3212 YpsIP31758_3213 YpsIP31758_3213 YpsIP31758_3213 3621092 3621823 - conserved hypothetical protein TIGR00726 identified by match to protein family HMM PF02578%3B match to protein family HMM TIGR00726 gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3213 YpsIP31758_3214 YpsIP31758_3214 rluD rluD 3621825 3622808 - ribosomal large subunit pseudouridine synthase D identified by similarity to SP:P33643%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3214 YpsIP31758_3215 YpsIP31758_3215 YpsIP31758_3215 3622944 3623675 + putative lipoprotein yfiO%3B identified by match to protein family HMM TIGR03302 gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3215 YpsIP31758_3216 YpsIP31758_3216 YpsIP31758_3216 3624030 3624392 + ribosomal subunit interface protein identified by match to protein family HMM PF02482%3B match to protein family HMM TIGR00741 gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3216 YpsIP31758_3217 YpsIP31758_3217 pheL pheL 3624524 3624574 + phe operon leader peptide gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3217 YpsIP31758_3218 YpsIP31758_3218 pheA pheA 3624754 3625911 + P-protein identified by similarity to SP:Q02286%3B match to protein family HMM PF00800%3B match to protein family HMM PF01817%3B match to protein family HMM TIGR01797 gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3218 YpsIP31758_3219 YpsIP31758_3219 tyrA tyrA 3626016 3627137 - T-protein identified by similarity to SP:P07023%3B match to protein family HMM PF01817%3B match to protein family HMM PF02153%3B match to protein family HMM TIGR01799 gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3219 YpsIP31758_3220 YpsIP31758_3220 aroF aroF 3627150 3628226 - phospho-2-dehydro-3-deoxyheptonate aldolase%2C Tyr-sensitive identified by similarity to SP:P00888%3B match to protein family HMM PF00793%3B match to protein family HMM TIGR00034 gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3220 YpsIP31758_3221 YpsIP31758_3221 YpsIP31758_3221 3628453 3629169 + LytTr DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397 gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3221 YpsIP31758_3222 YpsIP31758_3222 dcuB dcuB 3629602 3630945 + anaerobic C4-dicarboxylate transporter dcuB identified by similarity to SP:P0ABN9%3B match to protein family HMM PF03605%3B match to protein family HMM TIGR00770 gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3222 YpsIP31758_3223 YpsIP31758_3223 YpsIP31758_3223 3631268 3632035 + conserved hypothetical protein identified by similarity to GB:AAZ88142.1%3B match to protein family HMM PF04338 gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3223 YpsIP31758_3224 YpsIP31758_3224 YpsIP31758_3224 3632339 3632848 - IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3224 YpsIP31758_3225 YpsIP31758_3225 rplS rplS 3633009 3633356 - ribosomal protein L19 identified by match to protein family HMM PF01245%3B match to protein family HMM TIGR01024 gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3225 YpsIP31758_3226 YpsIP31758_3226 trmD trmD 3633437 3634177 - tRNA (guanine-N1)-methyltransferase identified by match to protein family HMM PF01746%3B match to protein family HMM TIGR00088 gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3226 YpsIP31758_3227 YpsIP31758_3227 rimM rimM 3634216 3634764 - 16S rRNA processing protein RimM identified by similarity to SP:P0A7X6%3B match to protein family HMM PF01782%3B match to protein family HMM PF05239%3B match to protein family HMM TIGR02273 gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3227 YpsIP31758_3228 YpsIP31758_3228 rpsP rpsP 3634786 3635034 - ribosomal protein S16 identified by match to protein family HMM PF00886%3B match to protein family HMM TIGR00002 gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3228 YpsIP31758_3229 YpsIP31758_3229 YpsIP31758_3229 3635089 3635253 + hypothetical protein identified by glimmer%3B putative gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3229 YpsIP31758_3230 YpsIP31758_3230 ffh ffh 3635262 3636623 - signal recognition particle protein identified by similarity to SP:P07019%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959 gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3230 YpsIP31758_3231 YpsIP31758_3231 YpsIP31758_3231 3636789 3637580 + putative cytochrome C assembly protein identified by match to protein family HMM PF01578 gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3231 YpsIP31758_3232 YpsIP31758_3232 YpsIP31758_3232 3637676 3638932 + CBS domain protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3232 YpsIP31758_3233 YpsIP31758_3233 luxS luxS 3639021 3639536 - S-ribosylhomocysteine lyase identified by similarity to SP:P45578%3B match to protein family HMM PF02664 gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3233 YpsIP31758_3234 YpsIP31758_3234 gshA gshA 3639704 3641302 - glutamate--cysteine ligase identified by match to protein family HMM PF04262%3B match to protein family HMM TIGR01434 gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3234 YpsIP31758_3235 YpsIP31758_3235 YpsIP31758_3235 3641346 3641774 - conserved hypothetical protein identified by similarity to GB:CAH20068.1 gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3235 YpsIP31758_3236 YpsIP31758_3236 YpsIP31758_3236 3641771 3642337 - HAD hydrolase%2C IA family identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR02009 gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3236 YpsIP31758_3237 YpsIP31758_3237 csrA csrA 3643637 3643822 - carbon storage regulator identified by match to protein family HMM PF02599%3B match to protein family HMM TIGR00202 gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3237 YpsIP31758_3238 YpsIP31758_3238 alaS alaS 3644072 3646699 - alanyl-tRNA synthetase identified by similarity to SP:P00957%3B match to protein family HMM PF01411%3B match to protein family HMM PF02272%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344 gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3238 YpsIP31758_3239 YpsIP31758_3239 recX recX 3646839 3647387 - regulatory protein RecX identified by similarity to SP:P33596%3B match to protein family HMM PF02631 gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3239 YpsIP31758_3240 YpsIP31758_3240 recA recA 3648021 3649091 - protein RecA identified by match to protein family HMM PF00154%3B match to protein family HMM TIGR02012 gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3240 YpsIP31758_3241 YpsIP31758_3241 YpsIP31758_3241 3649206 3649694 - competence/damage-inducible protein CinA domain protein identified by match to protein family HMM PF02464%3B match to protein family HMM TIGR00199 gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3241 YpsIP31758_3242 YpsIP31758_3242 YpsIP31758_3242 3650011 3651351 + transporter%2C major facilitator family identified by match to protein family HMM PF07690 gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3242 YpsIP31758_3243 YpsIP31758_3243 YpsIP31758_3243 3651413 3651559 + hypothetical protein identified by glimmer%3B putative gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3243 YpsIP31758_3244 YpsIP31758_3244 YpsIP31758_3244 3652535 3652678 - conserved domain protein identified by similarity to GB:CAC90996.1 gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3244 YpsIP31758_3245 YpsIP31758_3245 YpsIP31758_3245 3651599 3652543 + putative sugar-binding domain protein identified by match to protein family HMM PF04198 gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3245 YpsIP31758_3246 YpsIP31758_3246 YpsIP31758_3246 3652765 3654189 - fucose isomerase domain protein identified by match to protein family HMM PF02952 gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3246 YpsIP31758_3247 YpsIP31758_3247 YpsIP31758_3247 3654210 3655697 - carbohydrate kinase%2C FGGY family identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782 gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3247 YpsIP31758_3248 YpsIP31758_3248 YpsIP31758_3248 3655700 3656644 - putative transketolase%2C C-terminal subunit identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3248 YpsIP31758_3249 YpsIP31758_3249 YpsIP31758_3249 3656637 3657467 - putative transketolase. N-terminal subunit identified by match to protein family HMM PF00456 gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3249 YpsIP31758_3250 YpsIP31758_3250 rbsC6 rbsC6 3657706 3658851 - ribose ABC transporter%2C permease protein identified by similarity to SP:P36948%3B match to protein family HMM PF02653 gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3250 YpsIP31758_3251 YpsIP31758_3251 rbsA5 rbsA5 3658848 3660371 - ribose ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3251 YpsIP31758_3252 YpsIP31758_3252 YpsIP31758_3252 3660371 3660988 - putative lipoprotein identified by similarity to GB:CAC92549.1 gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3252 YpsIP31758_3253 YpsIP31758_3253 rbsB5 rbsB5 3661081 3662022 - ribose ABC transporter%2C periplasmic ribose-binding protein identified by similarity to SP:P02925%3B match to protein family HMM PF00532 gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3253 YpsIP31758_3254 YpsIP31758_3254 katG katG 3662557 3664770 + catalase/peroxidase HPI identified by similarity to SP:Q9X6B0%3B match to protein family HMM PF00141%3B match to protein family HMM TIGR00198 gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3254 YpsIP31758_3255 YpsIP31758_3255 YpsIP31758_3255 3664847 3665230 + cytochrome b562 identified by match to protein family HMM PF07361 gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3255 YpsIP31758_3256 YpsIP31758_3256 YpsIP31758_3256 3665377 3665907 + cytochrome b561 family protein identified by match to protein family HMM PF01292 gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3256 YpsIP31758_3257 YpsIP31758_3257 YpsIP31758_3257 3665970 3666083 + hypothetical protein identified by glimmer%3B putative gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3257 YpsIP31758_3258 YpsIP31758_3258 YpsIP31758_3258 3666165 3666845 - putative twin-argninine leader-binding DmsD identified by similarity to SP:P69853%3B match to protein family HMM PF06192 gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3258 YpsIP31758_3259 YpsIP31758_3259 dmsC dmsC 3667005 3667865 - anaerobic dimethyl sulfoxide reductase%2C C subunit identified by similarity to SP:P18777%3B match to protein family HMM PF04976 gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3259 YpsIP31758_3260 YpsIP31758_3260 dmsB dmsB 3667867 3668484 - anaerobic dimethyl sulfoxide reductase%2C B subunit identified by similarity to SP:P18776%3B match to protein family HMM PF00037%3B match to protein family HMM TIGR02951 gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3260 YpsIP31758_3261 YpsIP31758_3261 dmsA dmsA 3668496 3670946 - anaerobic dimethyl sulfoxide reductase%2C A subunit identified by similarity to SP:P18775%3B match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01409%3B match to protein family HMM TIGR02166 gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3261 YpsIP31758_3262 YpsIP31758_3262 araD2 araD2 3671678 3672373 - L-ribulose-5-phosphate 4-epimerase identified by similarity to SP:P08203%3B match to protein family HMM PF00596%3B match to protein family HMM TIGR00760 gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3262 YpsIP31758_3263 YpsIP31758_3263 YpsIP31758_3263 3672651 3672764 - hypothetical protein identified by glimmer%3B putative gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3263 YpsIP31758_3264 YpsIP31758_3264 YpsIP31758_3264 3673076 3673885 + transcriptional regulator%2C DeoR family identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3264 YpsIP31758_3265 YpsIP31758_3265 YpsIP31758_3265 3674043 3675050 + carbohydrate uptake ABC transporter 2 (CUT2) family%2C periplasmic carbohydrate-binding protein gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3265 YpsIP31758_3266 YpsIP31758_3266 YpsIP31758_3266 3675199 3676713 + carbohydrate uptake ABC transporter 2 (CUT2) family%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3266 YpsIP31758_3267 YpsIP31758_3267 YpsIP31758_3267 3676706 3677695 + carbohydrate uptake ABC transporter 2 (CUT2) family%2C permease protein identified by match to protein family HMM PF02653 gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3267 YpsIP31758_3268 YpsIP31758_3268 YpsIP31758_3268 3677708 3678745 + carbohydrate uptake ABC transporter 2 (CUT2) family%2C permease protein identified by match to protein family HMM PF02653 gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3268 YpsIP31758_3269 YpsIP31758_3269 YpsIP31758_3269 3678987 3679868 + putative hexulose-6-phosphate isomerase identified by similarity to SP:P37679%3B match to protein family HMM PF01261%3B match to protein family HMM TIGR00542 gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3269 YpsIP31758_3270 YpsIP31758_3270 lyxK lyxK 3679879 3681375 + cryptic L-xylulose kinase identified by similarity to SP:P37677%3B match to protein family HMM PF00370%3B match to protein family HMM PF02782 gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3270 YpsIP31758_3271 YpsIP31758_3271 YpsIP31758_3271 3681773 3683416 + fumarate hydratase%2C class I identified by similarity to SP:P14407%3B match to protein family HMM PF05681%3B match to protein family HMM PF05683%3B match to protein family HMM TIGR00722%3B match to protein family HMM TIGR00723 gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3271 YpsIP31758_3272 YpsIP31758_3272 YpsIP31758_3272 3683599 3683850 + conserved hypothetical protein identified by similarity to RF:ZP_00820437.1 gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3272 YpsIP31758_3273 YpsIP31758_3273 map2 map2 3683847 3684632 + methionine aminopeptidase%2C type I identified by match to protein family HMM PF00557%3B match to protein family HMM TIGR00500 gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3273 YpsIP31758_3274 YpsIP31758_3274 YpsIP31758_3274 3684642 3684818 - hypothetical protein identified by glimmer%3B putative gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3274 YpsIP31758_3275 YpsIP31758_3275 YpsIP31758_3275 3684851 3686134 - putative enterotoxin identified by match to protein family HMM PF07906 gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3275 YpsIP31758_3276 YpsIP31758_3276 YpsIP31758_3276 3686567 3688663 - TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR03304 gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3276 YpsIP31758_3277 YpsIP31758_3277 YpsIP31758_3277 3688982 3689128 - hypothetical protein identified by glimmer%3B putative gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3277 YpsIP31758_3278 YpsIP31758_3278 YpsIP31758_3278 3689324 3690703 + cytochrome c peroxidase identified by match to protein family HMM PF03150 gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3278 YpsIP31758_3279 YpsIP31758_3279 YpsIP31758_3279 3690768 3691538 + polar amino acid ABC transporter%2C periplasmic amino acid-binding protein identified by match to protein family HMM PF00497 gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3279 YpsIP31758_3280 YpsIP31758_3280 YpsIP31758_3280 3691962 3692165 + hypothetical protein identified by glimmer%3B putative gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3280 YpsIP31758_3281 YpsIP31758_3281 YpsIP31758_3281 3692886 3693227 + transcriptional regulator%2C ArsR family identified by match to protein family HMM PF01022 gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3281 YpsIP31758_3282 YpsIP31758_3282 arsB arsB 3693312 3694601 + arsenical pump membrane protein identified by similarity to SP:P52146%3B match to protein family HMM PF02040%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00935 gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3282 YpsIP31758_3283 YpsIP31758_3283 YpsIP31758_3283 3694857 3694970 - hypothetical protein identified by glimmer%3B putative gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3283 YpsIP31758_3284 YpsIP31758_3284 YpsIP31758_3284 3695168 3696127 + putative sugar-binding domain protein identified by match to protein family HMM PF04198 gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3284 YpsIP31758_3285 YpsIP31758_3285 YpsIP31758_3285 3696248 3696922 - dihydroxyacetone kinase%2C L subunit identified by match to protein family HMM PF02734%3B match to protein family HMM TIGR02365 gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3285 YpsIP31758_3286 YpsIP31758_3286 YpsIP31758_3286 3696929 3697930 - dihydroxyacetone kinase family protein identified by match to protein family HMM PF02733 gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3286 YpsIP31758_3287 YpsIP31758_3287 YpsIP31758_3287 3698017 3698787 - oxidoreductase%2C short chain dehydrogenase/reductase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3287 YpsIP31758_3288 YpsIP31758_3288 YpsIP31758_3288 3698851 3699966 - oxidoreductase%2C zinc-binding dehydrogenase family identified by match to protein family HMM PF00107 gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3288 YpsIP31758_3289 YpsIP31758_3289 rpiB rpiB 3700438 3700893 + ribose 5-phosphate isomerase B identified by match to protein family HMM PF02502%3B match to protein family HMM TIGR00689%3B match to protein family HMM TIGR01120 gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3289 YpsIP31758_3290 YpsIP31758_3290 YpsIP31758_3290 3701067 3701201 - conserved hypothetical protein identified by similarity to RF:NP_668170.1 gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3290 YpsIP31758_3291 YpsIP31758_3291 YpsIP31758_3291 3701614 3701727 - hypothetical protein identified by glimmer%3B putative gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3291 YpsIP31758_3292 YpsIP31758_3292 mutS mutS 3701698 3704253 + DNA mismatch repair protein MutS identified by match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070 gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3292 YpsIP31758_3293 YpsIP31758_3293 rpoS rpoS 3704626 3705624 - RNA polymerase sigma factor RpoS identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02394%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02942 gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3293 YpsIP31758_3294 YpsIP31758_3294 nlpD nlpD 3705679 3706662 - lipoprotein nlpD identified by similarity to SP:P0ADA4%3B match to protein family HMM PF01476%3B match to protein family HMM PF01551 gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3294 YpsIP31758_3295 YpsIP31758_3295 pcm pcm 3706784 3707410 - protein-L-isoaspartate O-methyltransferase identified by match to protein family HMM PF01135%3B match to protein family HMM TIGR00080 gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3295 YpsIP31758_3296 YpsIP31758_3296 surE surE 3707404 3708168 - 5'/3'-nucleotidase SurE identified by similarity to SP:P0A840%3B match to protein family HMM PF01975%3B match to protein family HMM TIGR00087 gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3296 YpsIP31758_3297 YpsIP31758_3297 truD truD 3708146 3709195 - tRNA pseudouridine synthase D identified by similarity to SP:Q57261%3B match to protein family HMM PF01142%3B match to protein family HMM TIGR00094 gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3297 YpsIP31758_3298 YpsIP31758_3298 ispF ispF 3709206 3709694 - 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase identified by match to protein family HMM PF02542%3B match to protein family HMM TIGR00151 gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3298 YpsIP31758_3299 YpsIP31758_3299 ispD ispD 3709833 3710558 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase identified by match to protein family HMM PF01128%3B match to protein family HMM TIGR00453 gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3299 YpsIP31758_3300 YpsIP31758_3300 ftsB ftsB 3710562 3710882 - cell division protein FtsB identified by similarity to SP:P0A6S5%3B match to protein family HMM PF04977 gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3300 YpsIP31758_3301 YpsIP31758_3301 YpsIP31758_3301 3711196 3711513 - conserved hypothetical protein identified by similarity to GB:AAS60597.1 gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3301 YpsIP31758_3302 YpsIP31758_3302 cysC cysC 3711704 3712345 - adenylylsulfate kinase identified by match to protein family HMM PF01583%3B match to protein family HMM TIGR00455 gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3302 YpsIP31758_3303 YpsIP31758_3303 cysN cysN 3712347 3713783 - sulfate adenylyltransferase%2C large subunit identified by similarity to SP:P23845%3B match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR02034 gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3303 YpsIP31758_3304 YpsIP31758_3304 cysD cysD 3713876 3714784 - sulfate adenylyltransferase%2C small subunit identified by similarity to SP:P21156%3B match to protein family HMM PF01507%3B match to protein family HMM TIGR02039 gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3304 YpsIP31758_3305 YpsIP31758_3305 cysG2 cysG2 3714795 3716213 - siroheme synthase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469%3B match to protein family HMM TIGR01470 gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3305 YpsIP31758_3306 YpsIP31758_3306 YpsIP31758_3306 3716515 3716781 - putative membrane protein gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3306 YpsIP31758_3307 YpsIP31758_3307 YpsIP31758_3307 3716805 3717005 + conserved hypothetical protein identified by similarity to GB:CAE41241.1%3B match to protein family HMM PF07927 gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3307 YpsIP31758_3308 YpsIP31758_3308 YpsIP31758_3308 3717180 3717587 + conserved hypothetical protein identified by similarity to GB:CAC92599.1%3B match to protein family HMM PF03681 gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3308 YpsIP31758_3309 YpsIP31758_3309 cysH cysH 3717831 3718565 - phosphoadenosine phosphosulfate reductase identified by similarity to SP:P17853%3B match to protein family HMM PF01507%3B match to protein family HMM TIGR00434%3B match to protein family HMM TIGR02057 gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3309 YpsIP31758_3310 YpsIP31758_3310 cysI cysI 3718562 3720292 - sulfite reductase (NADPH) hemoprotein%2C beta-component identified by similarity to SP:P17845%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM TIGR02041 gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3310 YpsIP31758_3311 YpsIP31758_3311 YpsIP31758_3311 3720292 3722130 - sulfite reductase [NADPH] flavoprotein%2C alpha-component identified by match to protein family HMM PF00175%3B match to protein family HMM PF00258%3B match to protein family HMM PF00667%3B match to protein family HMM TIGR01931 gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3311 YpsIP31758_3312 YpsIP31758_3312 YpsIP31758_3312 3722517 3722882 + putative 6-pyruvoyl tetrahydrobiopterin synthase identified by match to protein family HMM PF01242%3B match to protein family HMM TIGR03367 gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3312 YpsIP31758_3313 YpsIP31758_3313 YpsIP31758_3313 3723116 3723787 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3313 YpsIP31758_3314 YpsIP31758_3314 YpsIP31758_3314 3723806 3723907 - hypothetical protein identified by glimmer%3B putative gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3314 YpsIP31758_3315 YpsIP31758_3315 sodC sodC 3723891 3724478 - copper/zinc superoxide dismutase identified by similarity to SP:P53636%3B match to protein family HMM PF00080 gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3315 YpsIP31758_3316 YpsIP31758_3316 eno eno 3724850 3726145 - phosphopyruvate hydratase identified by match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060 gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3316 YpsIP31758_3317 YpsIP31758_3317 pyrG pyrG 3726226 3727863 - CTP synthase identified by match to protein family HMM PF00117%3B match to protein family HMM PF06418%3B match to protein family HMM TIGR00337 gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3317 YpsIP31758_3318 YpsIP31758_3318 YpsIP31758_3318 3728075 3728917 - MazG family protein identified by match to protein family HMM PF03819%3B match to protein family HMM TIGR00444 gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3318 YpsIP31758_3319 YpsIP31758_3319 relA relA 3729098 3731332 - GTP pyrophosphokinase identified by similarity to SP:P11585%3B match to protein family HMM PF01842%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691 gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3319 YpsIP31758_3320 YpsIP31758_3320 YpsIP31758_3320 3731342 3731467 - conserved hypothetical protein identified by similarity to RF:NP_668146.1 gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3320 YpsIP31758_3321 YpsIP31758_3321 YpsIP31758_3321 3731483 3731665 - hypothetical protein identified by glimmer%3B putative gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3321 YpsIP31758_3322 YpsIP31758_3322 barA barA 3731776 3734568 + signal transduction histidine-protein kinase BarA identified by similarity to SP:P0AEC5%3B match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3322 YpsIP31758_3323 YpsIP31758_3323 degP degP 3734727 3736172 - protease Do identified by similarity to SP:P09376%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037 gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3323 YpsIP31758_3324 YpsIP31758_3324 YpsIP31758_3324 3736370 3737890 - deoxyguanosinetriphosphate triphosphohydrolase identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR01353 gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3324 YpsIP31758_3325 YpsIP31758_3325 mtnN mtnN 3738167 3738868 + MTA/SAH nucleosidase identified by similarity to SP:P24247%3B match to protein family HMM PF01048%3B match to protein family HMM TIGR01704 gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3325 YpsIP31758_3326 YpsIP31758_3326 btuF btuF 3738868 3739710 + vitamin B12-binding protein identified by similarity to SP:P37028%3B match to protein family HMM PF01497 gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3326 YpsIP31758_3327 YpsIP31758_3327 YpsIP31758_3327 3739710 3740324 + putative membrane protein identified by match to protein family HMM PF03458 gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3327 YpsIP31758_3328 YpsIP31758_3328 YpsIP31758_3328 3740609 3740953 - iron-sulfur cluster assembly accessory protein identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049 gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3328 YpsIP31758_3329 YpsIP31758_3329 clcA clcA 3741089 3742525 - H(+)/Cl(-) exchange transporter ClcA identified by similarity to SP:P37019%3B match to protein family HMM PF00654 gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3329 YpsIP31758_3330 YpsIP31758_3330 hemL hemL 3742867 3744147 + glutamate-1-semialdehyde-2%2C1-aminomutase identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00713 gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3330 YpsIP31758_3331 YpsIP31758_3331 fhuB fhuB 3744520 3746532 - ferrichrome ABC transporter%2C permease protein identified by similarity to SP:P06972%3B match to protein family HMM PF01032 gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3331 YpsIP31758_3332 YpsIP31758_3332 fhuD fhuD 3746514 3747425 - ferrichrome ABC transporter%2C periplasmic ferrichrome-binding protein identified by similarity to SP:P07822%3B match to protein family HMM PF01497 gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3332 YpsIP31758_3333 YpsIP31758_3333 fhuC fhuC 3747584 3748378 - ferrichrome ABC transporter%2C ATP-binding protein identified by similarity to SP:P07821%3B match to protein family HMM PF00005 gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3333 YpsIP31758_3334 YpsIP31758_3334 mrcB mrcB 3748700 3751180 - penicillin-binding protein 1B identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02071 gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3334 YpsIP31758_3335 YpsIP31758_3335 hrpB hrpB 3751289 3753793 - ATP-dependent helicase HrpB identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04408%3B match to protein family HMM TIGR01970 gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3335 YpsIP31758_3336 YpsIP31758_3336 ligT ligT 3753933 3754508 + 2'-5' RNA ligase identified by similarity to SP:P37025%3B match to protein family HMM PF02834%3B match to protein family HMM TIGR02258 gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3336 YpsIP31758_3337 YpsIP31758_3337 sfsA sfsA 3754498 3755253 + sugar fermentation stimulation protein identified by match to protein family HMM PF03749%3B match to protein family HMM TIGR00230 gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3337 YpsIP31758_3338 YpsIP31758_3338 dksA dksA 3755423 3755878 + RNA polymerase-binding protein DksA identified by match to protein family HMM PF01258%3B match to protein family HMM TIGR02420 gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3338 YpsIP31758_3339 YpsIP31758_3339 gluQ gluQ 3756158 3757123 + glutamyl-Q tRNA(Asp) synthetase identified by similarity to SP:P27305%3B match to protein family HMM PF00749 gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3339 YpsIP31758_3340 YpsIP31758_3340 pcnB pcnB 3757212 3758687 + poly(A) polymerase identified by similarity to SP:P0ABF1%3B match to protein family HMM PF01743%3B match to protein family HMM TIGR01942 gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3340 YpsIP31758_3341 YpsIP31758_3341 folK folK 3758695 3759174 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase identified by match to protein family HMM PF01288%3B match to protein family HMM TIGR01498 gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3341 YpsIP31758_3342 YpsIP31758_3342 YpsIP31758_3342 3759322 3759459 - hypothetical protein identified by glimmer%3B putative gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3342 YpsIP31758_3343 YpsIP31758_3343 panB panB 3759443 3760240 + 3-methyl-2-oxobutanoate hydroxymethyltransferase identified by match to protein family HMM PF02548%3B match to protein family HMM TIGR00222 gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3343 YpsIP31758_3344 YpsIP31758_3344 panC panC 3760328 3761182 + pantoate--beta-alanine ligase identified by match to protein family HMM PF02569%3B match to protein family HMM TIGR00018 gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3344 YpsIP31758_3345 YpsIP31758_3345 panD panD 3761593 3761973 + aspartate 1-decarboxylase identified by match to protein family HMM PF02261%3B match to protein family HMM TIGR00223 gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3345 YpsIP31758_3346 YpsIP31758_3346 YpsIP31758_3346 3762106 3763359 - polysaccharide deacetylase family protein identified by match to protein family HMM PF01522 gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3346 YpsIP31758_3347 YpsIP31758_3347 YpsIP31758_3347 3763470 3763598 + hypothetical protein identified by glimmer%3B putative gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3347 YpsIP31758_3348 YpsIP31758_3348 YpsIP31758_3348 3763621 3764391 - ABC transporter%2C permease protein identified by match to protein family HMM PF01061 gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3348 YpsIP31758_3349 YpsIP31758_3349 YpsIP31758_3349 3764388 3765314 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3349 YpsIP31758_3350 YpsIP31758_3350 YpsIP31758_3350 3765550 3766212 + carbonic anhydrase identified by match to protein family HMM PF00484 gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3350 YpsIP31758_3351 YpsIP31758_3351 hpt hpt 3766402 3766947 - hypoxanthine phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01203 gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3351 YpsIP31758_3352 YpsIP31758_3352 cueO cueO 3767158 3768759 - blue copper oxidase CueO identified by similarity to SP:P36649%3B match to protein family HMM PF00394%3B match to protein family HMM PF07731%3B match to protein family HMM PF07732%3B match to protein family HMM TIGR01409 gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3352 YpsIP31758_3353 YpsIP31758_3353 YpsIP31758_3353 3769076 3769423 + conserved hypothetical protein identified by similarity to SP:P0AA95 gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3353 YpsIP31758_3354 YpsIP31758_3354 speE speE 3769540 3770430 + spermidine synthase identified by match to protein family HMM PF01564%3B match to protein family HMM TIGR00417 gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3354 YpsIP31758_3355 YpsIP31758_3355 speD speD 3770508 3771302 + S-adenosylmethionine decarboxylase proenzyme identified by match to protein family HMM PF02675 gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3355 YpsIP31758_3356 YpsIP31758_3356 YpsIP31758_3356 3771487 3771642 - hypothetical protein identified by glimmer%3B putative gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3356 YpsIP31758_3357 YpsIP31758_3357 YpsIP31758_3357 3771740 3772627 + integral membrane protein identified by match to protein family HMM PF00892 gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3357 YpsIP31758_3358 YpsIP31758_3358 YpsIP31758_3358 3772752 3773111 - conserved hypothetical protein identified by match to protein family HMM PF06062 gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3358 YpsIP31758_3359 YpsIP31758_3359 acnB acnB 3773410 3776007 - aconitate hydratase 2 identified by similarity to SP:P36683%3B match to protein family HMM PF00330%3B match to protein family HMM PF06434%3B match to protein family HMM TIGR00117 gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3359 YpsIP31758_3360 YpsIP31758_3360 lpdA lpdA 3776567 3777991 - dihydrolipoamide dehydrogenase identified by similarity to SP:P0A9P0%3B match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350 gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3360 YpsIP31758_3361 YpsIP31758_3361 YpsIP31758_3361 3778118 3778279 - hypothetical protein identified by glimmer%3B putative gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3361 YpsIP31758_3362 YpsIP31758_3362 aceF aceF 3778297 3779877 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase identified by similarity to SP:P06959%3B match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817%3B match to protein family HMM TIGR01348 gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3362 YpsIP31758_3363 YpsIP31758_3363 aceE aceE 3779891 3782554 - pyruvate dehydrogenase%2C E1 component identified by similarity to SP:P06958%3B match to protein family HMM TIGR00759 gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3363 YpsIP31758_3364 YpsIP31758_3364 pdhR pdhR 3782750 3783514 - pyruvate dehydrogenase complex repressor identified by similarity to SP:P0ACL9%3B match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3364 YpsIP31758_3365 YpsIP31758_3365 YpsIP31758_3365 3783980 3784099 + hypothetical protein identified by glimmer%3B putative gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3365 YpsIP31758_3366 YpsIP31758_3366 aroP2 aroP2 3784377 3785774 + aromatic amino acid transport protein AroP identified by similarity to SP:P15993%3B match to protein family HMM PF00324 gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3366 YpsIP31758_3367 YpsIP31758_3367 YpsIP31758_3367 3786207 3787061 - AmpE-like protein identified by similarity to SP:P0AE15 gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3367 YpsIP31758_3368 YpsIP31758_3368 ampD ampD 3787334 3787885 - N-acetyl-anhydromuramyl-L-alanine amidase identified by similarity to GB:AAK71524.1%3B match to protein family HMM PF01510 gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3368 YpsIP31758_3369 YpsIP31758_3369 nadC nadC 3787998 3788906 + nicotinate-nucleotide pyrophosphorylase identified by match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR00078 gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3369 YpsIP31758_3370 YpsIP31758_3370 pilA pilA 3789109 3789573 + type IV pilin PilA identified by similarity to GB:AAX12396.1%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3370 YpsIP31758_3371 YpsIP31758_3371 YpsIP31758_3371 3789566 3791104 + putative protein transport protein HofB identified by match to protein family HMM PF00437 gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3371 YpsIP31758_3372 YpsIP31758_3372 YpsIP31758_3372 3791101 3792300 + putative protein transport protein HofC identified by match to protein family HMM PF00482 gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3372 YpsIP31758_3373 YpsIP31758_3373 guaC guaC 3792741 3793784 - guanosine monophosphate reductase identified by match to protein family HMM PF00478%3B match to protein family HMM TIGR01305 gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3373 YpsIP31758_3374 YpsIP31758_3374 coaE coaE 3794080 3794700 + dephospho-CoA kinase identified by match to protein family HMM PF01121%3B match to protein family HMM TIGR00152 gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3374 YpsIP31758_3375 YpsIP31758_3375 YpsIP31758_3375 3794697 3795449 + conserved hypothetical protein identified by match to protein family HMM PF07072 gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3375 YpsIP31758_3376 YpsIP31758_3376 yacG yacG 3795657 3795863 + zinc-binding protein YacG identified by similarity to SP:P0A8H8%3B match to protein family HMM PF03884 gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3376 YpsIP31758_3377 YpsIP31758_3377 mutT mutT 3796033 3796419 - mutator mutT protein identified by similarity to SP:P08337%3B match to protein family HMM PF00293%3B match to protein family HMM TIGR00586 gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3377 YpsIP31758_3378 YpsIP31758_3378 secA secA 3796714 3799428 - preprotein translocase%2C SecA subunit identified by similarity to SP:P10408%3B match to protein family HMM PF01043%3B match to protein family HMM PF02810%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963 gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3378 YpsIP31758_3379 YpsIP31758_3379 secM secM 3799506 3800039 - secretion monitor protein SecM identified by similarity to SP:P62395%3B match to protein family HMM PF06558 gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3379 YpsIP31758_3380 YpsIP31758_3380 YpsIP31758_3380 3800068 3800592 + conserved hypothetical protein identified by similarity to GB:CAG76707.1 gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3380 YpsIP31758_3381 YpsIP31758_3381 lpxC lpxC 3800774 3801694 - UDP-3-0-acyl N-acetylglucosamine deacetylase identified by match to protein family HMM PF03331%3B match to protein family HMM TIGR00325 gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3381 YpsIP31758_3382 YpsIP31758_3382 ftsZ ftsZ 3801794 3802945 - cell division protein FtsZ identified by similarity to SP:P0A9A6%3B match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065 gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3382 YpsIP31758_3383 YpsIP31758_3383 ftsA ftsA 3803018 3804274 - cell division protein FtsA identified by similarity to SP:P0ABH0%3B match to protein family HMM PF02491%3B match to protein family HMM TIGR01174 gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3383 YpsIP31758_3384 YpsIP31758_3384 ftsQ ftsQ 3804301 3805128 - cell division protein FtsQ identified by similarity to SP:P06136%3B match to protein family HMM PF03799 gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3384 YpsIP31758_3385 YpsIP31758_3385 YpsIP31758_3385 3805130 3806050 - D-alanine--D-alanine ligase identified by similarity to SP:P07862%3B match to protein family HMM PF01820%3B match to protein family HMM PF07478%3B match to protein family HMM TIGR01205 gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3385 YpsIP31758_3386 YpsIP31758_3386 murC murC 3806043 3807545 - UDP-N-acetylmuramate--alanine ligase identified by similarity to SP:P17952%3B match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01082 gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3386 YpsIP31758_3387 YpsIP31758_3387 murG murG 3807656 3808726 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase identified by similarity to SP:P17443%3B match to protein family HMM PF03033%3B match to protein family HMM PF04101%3B match to protein family HMM TIGR01133 gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3387 YpsIP31758_3388 YpsIP31758_3388 ftsW ftsW 3808723 3809925 - cell division protein FtsW identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02614 gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3388 YpsIP31758_3389 YpsIP31758_3389 murD murD 3809925 3811241 - UDP-N-acetylmuramoylalanine--D-glutamate ligase identified by match to protein family HMM PF02875%3B match to protein family HMM TIGR01087 gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3389 YpsIP31758_3390 YpsIP31758_3390 mraY mraY 3811244 3812326 - phospho-N-acetylmuramoyl-pentapeptide-transferase identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR00445 gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3390 YpsIP31758_3391 YpsIP31758_3391 murF murF 3812320 3813696 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase identified by similarity to SP:P11880%3B match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01143 gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3391 YpsIP31758_3392 YpsIP31758_3392 murE murE 3813693 3815180 - UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase identified by similarity to SP:P22188%3B match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01085 gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3392 YpsIP31758_3393 YpsIP31758_3393 YpsIP31758_3393 3815167 3816930 - penicillin-binding protein identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717 gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3393 YpsIP31758_3394 YpsIP31758_3394 ftsL ftsL 3816996 3817313 - cell division protein FtsL identified by similarity to SP:P22187%3B match to protein family HMM PF04999%3B match to protein family HMM TIGR02209 gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3394 YpsIP31758_3395 YpsIP31758_3395 mraW mraW 3817310 3818272 - S-adenosyl-methyltransferase MraW identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006 gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3395 YpsIP31758_3396 YpsIP31758_3396 mraZ mraZ 3818275 3818733 - mraZ protein identified by match to protein family HMM PF02381%3B match to protein family HMM TIGR00242 gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3396 YpsIP31758_3397 YpsIP31758_3397 YpsIP31758_3397 3819835 3820275 + putative membrane protein identified by match to protein family HMM PF06610 gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3397 YpsIP31758_3398 YpsIP31758_3398 YpsIP31758_3398 3820475 3820984 - IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3398 YpsIP31758_3399 YpsIP31758_3399 YpsIP31758_3399 3821117 3822127 - D-fructose-responsive transcription factor identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532%3B match to protein family HMM TIGR02417 gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3399 YpsIP31758_3400 YpsIP31758_3400 ilvN ilvN 3822578 3823072 - acetolactate synthase%2C small subunit identified by match to protein family HMM PF01842%3B match to protein family HMM TIGR00119 gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3400 YpsIP31758_3401 YpsIP31758_3401 ilvB1 ilvB1 3823075 3824802 - acetolactate synthase%2C large subunit%2C biosynthetic type identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118 gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3401 YpsIP31758_3402 YpsIP31758_3402 YpsIP31758_3402 3825262 3827067 - AMP binding protein identified by match to protein family HMM PF00501 gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3402 YpsIP31758_3403 YpsIP31758_3403 YpsIP31758_3403 3827620 3828576 - substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3403 YpsIP31758_3404 YpsIP31758_3404 leuL leuL 3829622 3829705 + leucine operon leader peptide identified by match to protein family HMM PF08054 gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3404 YpsIP31758_3405 YpsIP31758_3405 leuA leuA 3829791 3831353 + 2-isopropylmalate synthase identified by match to protein family HMM PF00682%3B match to protein family HMM TIGR00973 gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3405 YpsIP31758_3406 YpsIP31758_3406 leuB leuB 3831356 3832447 + 3-isopropylmalate dehydrogenase identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00169 gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3406 YpsIP31758_3407 YpsIP31758_3407 leuC leuC 3832449 3833879 + 3-isopropylmalate dehydratase%2C large subunit identified by match to protein family HMM PF00330%3B match to protein family HMM TIGR00170 gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3407 YpsIP31758_3408 YpsIP31758_3408 leuD leuD 3833894 3834496 + 3-isopropylmalate dehydratase%2C small subunit identified by match to protein family HMM PF00694%3B match to protein family HMM TIGR00171 gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3408 YpsIP31758_3409 YpsIP31758_3409 setA setA 3834737 3835918 - sugar efflux transporter A identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00899 gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3409 YpsIP31758_3410 YpsIP31758_3410 YpsIP31758_3410 3836396 3836515 + hypothetical protein identified by glimmer%3B putative gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3410 YpsIP31758_3411 YpsIP31758_3411 sgrR sgrR 3836650 3838311 + sugar transport-related sRNA identified by similarity to SP:P33595%3B match to protein family HMM PF00496 gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3411 YpsIP31758_3412 YpsIP31758_3412 thiamin/thiamin pyrophosphate ABC transporter/thiamin/thiamin pyrophospate-binding protein thiamin/thiamin pyrophosphate ABC transporter/thiamin/thiamin pyrophospate-binding protein 3839251 3840954 + pseudogene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3412 YpsIP31758_3413 YpsIP31758_3413 YpsIP31758_3413 3839640 3840149 - IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3413 YpsIP31758_3415 YpsIP31758_3415 thiP thiP 3840930 3842537 + thiamine/thiamine pyrophosphate ABC transporter%2C permease protein identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01253 gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3415 YpsIP31758_3416 YpsIP31758_3416 thiQ thiQ 3842524 3843234 + thiamine ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01277 gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3416 YpsIP31758_3417 YpsIP31758_3417 YpsIP31758_3417 3843303 3844070 - putative membrane protein gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3417 YpsIP31758_3418 YpsIP31758_3418 polB polB 3844266 3846635 + DNA polymerase II identified by similarity to SP:P21189%3B match to protein family HMM PF00136%3B match to protein family HMM PF03104 gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3418 YpsIP31758_3419 YpsIP31758_3419 rapA rapA 3847096 3850002 + RNA polymerase-associated protein RapA identified by similarity to SP:P60240%3B match to protein family HMM PF00176%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851 gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3419 YpsIP31758_3420 YpsIP31758_3420 YpsIP31758_3420 3850258 3850611 - conserved hypothetical protein identified by similarity to GB:AAY59153.1 gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3420 YpsIP31758_3421 YpsIP31758_3421 YpsIP31758_3421 3850633 3854127 - conserved hypothetical protein identified by match to protein family HMM PF06744%3B match to protein family HMM PF06761%3B match to protein family HMM TIGR03348 gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3421 YpsIP31758_3422 YpsIP31758_3422 YpsIP31758_3422 3854136 3855746 - OmpA domain protein identified by match to protein family HMM PF00691%3B match to protein family HMM TIGR03349 gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3422 YpsIP31758_3423 YpsIP31758_3423 YpsIP31758_3423 3855743 3857098 - conserved hypothetical protein identified by match to protein family HMM PF05936%3B match to protein family HMM TIGR03353 gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3423 YpsIP31758_3424 YpsIP31758_3424 YpsIP31758_3424 3857218 3857709 - putative lipoprotein identified by similarity to GB:CAC89370.1%3B match to protein family HMM TIGR03352 gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3424 YpsIP31758_3425 YpsIP31758_3425 YpsIP31758_3425 3857702 3858067 - conserved hypothetical protein identified by similarity to GB:AAY59268.1 gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3425 YpsIP31758_3426 YpsIP31758_3426 YpsIP31758_3426 3858073 3858690 - conserved hypothetical protein identified by similarity to GB:CAE31305.1 gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3426 YpsIP31758_3427 YpsIP31758_3427 YpsIP31758_3427 3858683 3859786 - pentapeptide repeat protein identified by match to protein family HMM PF00805 gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3427 YpsIP31758_3428 YpsIP31758_3428 YpsIP31758_3428 3859812 3862031 - pentapeptide repeat protein identified by match to protein family HMM PF00805 gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3428 YpsIP31758_3429 YpsIP31758_3429 YpsIP31758_3429 3862044 3864392 - Rhs element Vgr protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646%3B match to protein family HMM TIGR03361 gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3429 YpsIP31758_3430 YpsIP31758_3430 YpsIP31758_3430 3864496 3867099 - ATPase%2C AAA family identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR03345 gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3430 YpsIP31758_3431 YpsIP31758_3431 YpsIP31758_3431 3867102 3868085 - conserved hypothetical protein identified by match to protein family HMM PF06996%3B match to protein family HMM TIGR03347 gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3431 YpsIP31758_3432 YpsIP31758_3432 YpsIP31758_3432 3868078 3869922 - conserved hypothetical protein identified by match to protein family HMM PF05947%3B match to protein family HMM TIGR03359 gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3432 YpsIP31758_3433 YpsIP31758_3433 YpsIP31758_3433 3869955 3870398 - conserved hypothetical protein identified by match to protein family HMM PF07025%3B match to protein family HMM TIGR03357 gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3433 YpsIP31758_3434 YpsIP31758_3434 YpsIP31758_3434 3870472 3870990 - conserved hypothetical protein identified by match to protein family HMM PF05638 gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3434 YpsIP31758_3435 YpsIP31758_3435 YpsIP31758_3435 3871153 3872655 - conserved hypothetical protein identified by similarity to GB:AAU46096.1%3B match to protein family HMM PF05943%3B match to protein family HMM TIGR03355 gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3435 YpsIP31758_3436 YpsIP31758_3436 YpsIP31758_3436 3872664 3873224 - conserved hypothetical protein identified by match to protein family HMM PF05591%3B match to protein family HMM TIGR03358 gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3436 YpsIP31758_3437 YpsIP31758_3437 YpsIP31758_3437 3873235 3874248 - ImpA domain protein identified by match to protein family HMM PF06812 gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3437 YpsIP31758_3438 YpsIP31758_3438 YpsIP31758_3438 3874578 3875321 + conserved hypothetical protein identified by similarity to GB:CAD16315.1 gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3438 YpsIP31758_3439 YpsIP31758_3439 rluA rluA 3876544 3877164 + ribosomal large subunit pseudouridine synthase A identified by similarity to SP:P0AA37%3B match to protein family HMM PF00849 gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3439 YpsIP31758_3440 YpsIP31758_3440 djlA djlA 3877481 3878314 - dnaJ-like protein DjlA identified by similarity to SP:P31680%3B match to protein family HMM PF00226 gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3440 YpsIP31758_3441 YpsIP31758_3441 imp imp 3878499 3880841 + organic solvent tolerance protein identified by similarity to SP:P31554%3B match to protein family HMM PF03968%3B match to protein family HMM PF04453 gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3441 YpsIP31758_3442 YpsIP31758_3442 surA surA 3880909 3882213 + chaperone SurA identified by similarity to SP:P0ABZ6%3B match to protein family HMM PF00639 gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3442 YpsIP31758_3443 YpsIP31758_3443 pdxA pdxA 3882197 3883192 + 4-hydroxythreonine-4-phosphate dehydrogenase identified by match to protein family HMM PF04166%3B match to protein family HMM TIGR00557 gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3443 YpsIP31758_3444 YpsIP31758_3444 ksgA ksgA 3883185 3884003 + dimethyladenosine transferase identified by similarity to SP:P06992%3B match to protein family HMM PF00398%3B match to protein family HMM TIGR00755 gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3444 YpsIP31758_3445 YpsIP31758_3445 apaG apaG 3884017 3884394 + apaG protein identified by match to protein family HMM PF04379 gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3445 YpsIP31758_3446 YpsIP31758_3446 YpsIP31758_3446 3884411 3885280 + bis(5'-nucleosyl)-tetraphosphatase (symmetrical) identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00668 gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3446 YpsIP31758_3447 YpsIP31758_3447 YpsIP31758_3447 3885370 3885834 - conserved hypothetical protein identified by similarity to GB:AAT35189.1 gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3447 YpsIP31758_3448 YpsIP31758_3448 YpsIP31758_3448 3886321 3886440 - hypothetical protein identified by glimmer%3B putative gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3448 YpsIP31758_3449 YpsIP31758_3449 folA folA 3886657 3887139 - dihydrofolate reductase identified by match to protein family HMM PF00186 gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3449 YpsIP31758_3450 YpsIP31758_3450 YpsIP31758_3450 3887289 3887753 - conserved hypothetical protein identified by similarity to GB:AAM87237.1 gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3450 YpsIP31758_3451 YpsIP31758_3451 YpsIP31758_3451 3887750 3888550 - conserved hypothetical protein identified by similarity to GB:CAH19866.1%3B match to protein family HMM PF06738 gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3451 YpsIP31758_3452 YpsIP31758_3452 YpsIP31758_3452 3888865 3889479 + translocator protein%2C LysE family identified by match to protein family HMM PF01810 gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3452 YpsIP31758_3453 YpsIP31758_3453 carB carB 3889705 3892938 - carbamoyl-phosphate synthase%2C large subunit identified by match to protein family HMM PF00289%3B match to protein family HMM PF02142%3B match to protein family HMM PF02786%3B match to protein family HMM PF02787%3B match to protein family HMM TIGR01369 gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3453 YpsIP31758_3454 YpsIP31758_3454 carA carA 3892954 3894129 - carbamoyl-phosphate synthase%2C small subunit identified by match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368 gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3454 YpsIP31758_3455 YpsIP31758_3455 dapB dapB 3894602 3895423 - dihydrodipicolinate reductase identified by match to protein family HMM PF01113%3B match to protein family HMM PF05173%3B match to protein family HMM TIGR00036 gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3455 YpsIP31758_3456 YpsIP31758_3456 YpsIP31758_3456 3895812 3895937 - hypothetical protein identified by glimmer%3B putative gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3456 YpsIP31758_3457 YpsIP31758_3457 ispH ispH 3896005 3896958 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase identified by match to protein family HMM PF02401%3B match to protein family HMM TIGR00216 gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3457 YpsIP31758_3458 YpsIP31758_3458 YpsIP31758_3458 3896939 3897397 - peptidyl-prolyl cis-trans isomerase%2C FKBP-type identified by match to protein family HMM PF00254 gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3458 YpsIP31758_3459 YpsIP31758_3459 lspA lspA 3897465 3897974 - signal peptidase II identified by similarity to SP:P00804%3B match to protein family HMM PF01252%3B match to protein family HMM TIGR00077 gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3459 YpsIP31758_3460 YpsIP31758_3460 ileS ileS 3897974 3900790 - isoleucyl-tRNA synthetase identified by similarity to SP:P00956%3B match to protein family HMM PF00133%3B match to protein family HMM PF06827%3B match to protein family HMM TIGR00392 gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3460 YpsIP31758_3461 YpsIP31758_3461 ribF ribF 3900822 3901760 - riboflavin biosynthesis protein RibF identified by match to protein family HMM PF01467%3B match to protein family HMM PF01687%3B match to protein family HMM PF06574%3B match to protein family HMM TIGR00083 gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3461 YpsIP31758_3462 YpsIP31758_3462 rpsT rpsT 3902175 3902438 + ribosomal protein S20 identified by match to protein family HMM PF01649%3B match to protein family HMM TIGR00029 gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3462 YpsIP31758_3463 YpsIP31758_3463 nhaR nhaR 3902569 3903468 - transcriptional activator protein NhaR identified by similarity to SP:P0A9G2%3B match to protein family HMM PF00126 gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3463 YpsIP31758_3464 YpsIP31758_3464 nhaA nhaA 3903598 3904782 - Na+/H+ antiporter NhaA identified by similarity to SP:P13738%3B match to protein family HMM PF06965%3B match to protein family HMM TIGR00773 gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3464 YpsIP31758_3465 YpsIP31758_3465 dnaJ dnaJ 3905025 3906164 - chaperone protein DnaJ identified by similarity to SP:P08622%3B match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349 gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3465 YpsIP31758_3466 YpsIP31758_3466 dnaK dnaK 3906276 3908186 - chaperone protein DnaK identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR02350 gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3466 YpsIP31758_3467 YpsIP31758_3467 YpsIP31758_3467 3908560 3909171 + gpr1/fun34/yaaH family protein identified by match to protein family HMM PF01184 gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3467 YpsIP31758_3468 YpsIP31758_3468 YpsIP31758_3468 3909461 3911908 + acetyltransferase%2C GNAT family domain protein identified by match to protein family HMM PF00583 gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3468 YpsIP31758_3469 YpsIP31758_3469 YpsIP31758_3469 3911987 3913366 - transporter%2C major facilitator family identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3469 YpsIP31758_3470 YpsIP31758_3470 YpsIP31758_3470 3913494 3914081 - putative molybdopterin biosynthesis mog protein identified by similarity to SP:P28694%3B match to protein family HMM PF00994%3B match to protein family HMM TIGR00177 gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3470 YpsIP31758_3471 YpsIP31758_3471 YpsIP31758_3471 3914167 3914325 - hypothetical protein identified by glimmer%3B putative gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3471 YpsIP31758_3472 YpsIP31758_3472 tal tal 3914369 3915322 - transaldolase identified by match to protein family HMM PF00923%3B match to protein family HMM TIGR00874 gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3472 YpsIP31758_3473 YpsIP31758_3473 YpsIP31758_3473 3915854 3916630 + conserved hypothetical protein identified by similarity to SP:P0A8I4%3B match to protein family HMM PF03883 gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3473 YpsIP31758_3474 YpsIP31758_3474 thrC thrC 3917446 3918735 - threonine synthase identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260 gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3474 YpsIP31758_3475 YpsIP31758_3475 thrB thrB 3918739 3919668 - homoserine kinase identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00191 gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3475 YpsIP31758_3476 YpsIP31758_3476 thrA thrA 3919671 3922130 - bifunctional aspartokinase/homoserine dehydrogenase I identified by similarity to SP:P00561%3B match to protein family HMM PF00696%3B match to protein family HMM PF00742%3B match to protein family HMM PF01842%3B match to protein family HMM PF03447%3B match to protein family HMM TIGR00657 gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3476 YpsIP31758_3477 YpsIP31758_3477 thrL thrL 3922249 3922335 - thr operon leader peptide identified by match to protein family HMM TIGR02077 gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3477 YpsIP31758_3478 YpsIP31758_3478 YpsIP31758_3478 3923234 3923950 + DNA-binding response regulator ArcA identified by similarity to SP:P0A9Q1%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3478 YpsIP31758_3479 YpsIP31758_3479 creA creA 3924124 3924591 - creA protein identified by match to protein family HMM PF05981 gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3479 YpsIP31758_3480 YpsIP31758_3480 YpsIP31758_3480 3925680 3926327 - phosphoglycerate mutase family protein identified by match to protein family HMM PF00300 gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3480 YpsIP31758_3481 YpsIP31758_3481 rob rob 3924817 3925683 + right origin-binding protein identified by similarity to SP:P0ACI2%3B match to protein family HMM PF00165%3B match to protein family HMM PF06445 gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3481 YpsIP31758_3482 YpsIP31758_3482 YpsIP31758_3482 3926976 3927368 - trp operon repressor identified by match to protein family HMM PF01371%3B match to protein family HMM TIGR01321 gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3482 YpsIP31758_3483 YpsIP31758_3483 YpsIP31758_3483 3926437 3926979 + conserved hypothetical protein TIGR00258 identified by match to protein family HMM PF01931%3B match to protein family HMM TIGR00258 gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3483 YpsIP31758_3484 YpsIP31758_3484 YpsIP31758_3484 3927605 3929524 - putative soluble lytic murein transglycosylase identified by similarity to SP:P03810%3B match to protein family HMM PF01464 gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3484 YpsIP31758_3485 YpsIP31758_3485 YpsIP31758_3485 3930094 3932820 + cation-transporting ATPase%2C P-type%2C HAD superfamily%2C subfamily IC identified by match to protein family HMM PF00122%3B match to protein family HMM PF00689%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494 gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3485 YpsIP31758_3486 YpsIP31758_3486 YpsIP31758_3486 3933186 3933809 + conserved hypothetical protein identified by similarity to RF:ZP_00824084.1 gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3486 YpsIP31758_3487 YpsIP31758_3487 YpsIP31758_3487 3933830 3935107 + putative diguanylate cyclase%2C GGDEF domain identified by similarity to SP:P46139%3B match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3487 YpsIP31758_3488 YpsIP31758_3488 YpsIP31758_3488 3935113 3935619 + ompA family protein identified by match to protein family HMM PF00691 gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3488 YpsIP31758_3489 YpsIP31758_3489 YpsIP31758_3489 3935802 3937469 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3489 YpsIP31758_3490 YpsIP31758_3490 YpsIP31758_3490 3937615 3938745 - Fic family protein identified by match to protein family HMM PF02661 gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3490 YpsIP31758_3491 YpsIP31758_3491 YpsIP31758_3491 3938902 3940173 - nicotinamide-nucleotide adenylyltransferase identified by match to protein family HMM PF01381%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01526 gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3491 YpsIP31758_3492 YpsIP31758_3492 radA radA 3940332 3941714 - DNA repair protein radA identified by similarity to SP:P24554%3B match to protein family HMM TIGR00416 gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3492 YpsIP31758_3493 YpsIP31758_3493 serB serB 3941817 3942797 - phosphoserine phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR00338%3B match to protein family HMM TIGR01488 gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3493 YpsIP31758_3494 YpsIP31758_3494 YpsIP31758_3494 3943031 3943732 + putative membrane protein Smp gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3494 YpsIP31758_3495 YpsIP31758_3495 deoD deoD 3943844 3944563 - purine nucleoside phosphorylase identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR00107 gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3495 YpsIP31758_3496 YpsIP31758_3496 deoB deoB 3944688 3945911 - phosphopentomutase identified by match to protein family HMM PF01676%3B match to protein family HMM PF08342%3B match to protein family HMM TIGR01696 gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3496 YpsIP31758_3497 YpsIP31758_3497 deoA deoA 3946043 3947365 - thymidine phosphorylase identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM PF07831%3B match to protein family HMM TIGR02643%3B match to protein family HMM TIGR02644 gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3497 YpsIP31758_3498 YpsIP31758_3498 deoC1 deoC1 3947486 3948283 - deoxyribose-phosphate aldolase identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126 gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3498 YpsIP31758_3499 YpsIP31758_3499 YpsIP31758_3499 3948904 3950175 - nucleoside transporter%2C NupC family identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804 gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3499 YpsIP31758_3500 YpsIP31758_3500 YpsIP31758_3500 3950710 3951498 - hydrolase%2C TatD family identified by match to protein family HMM PF01026 gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3500 YpsIP31758_3501 YpsIP31758_3501 YpsIP31758_3501 3951535 3952803 - phospholipase%2C patatin family identified by match to protein family HMM PF01734 gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3501 YpsIP31758_3502 YpsIP31758_3502 YpsIP31758_3502 3952880 3953041 - conserved hypothetical protein gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3502 YpsIP31758_3503 YpsIP31758_3503 osmY osmY 3953208 3953822 - Osmotically induced periplasmic protein OsmY identified by similarity to SP:P27291%3B match to protein family HMM PF04972 gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3503 YpsIP31758_3504 YpsIP31758_3504 prfC prfC 3954150 3955739 - peptide chain release factor 3 identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00503 gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3504 YpsIP31758_3505 YpsIP31758_3505 rimI rimI 3955917 3956360 - ribosomal-protein-alanine acetyltransferase identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR01575 gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3505 YpsIP31758_3506 YpsIP31758_3506 holD holD 3956305 3956742 - DNA polymerase III%2C psi subunit identified by similarity to SP:P28632%3B match to protein family HMM PF03603 gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3506 YpsIP31758_3507 YpsIP31758_3507 YpsIP31758_3507 3956855 3957898 + methyltransferase family protein identified by match to protein family HMM PF05175 gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3507 YpsIP31758_3508 YpsIP31758_3508 YpsIP31758_3508 3958795 3959034 - putative membrane protein identified by similarity to SP:P55914%3B match to protein family HMM PF07256 gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3508 YpsIP31758_3509 YpsIP31758_3509 YpsIP31758_3509 3959376 3960530 + diguanylate cyclase (GGDEF) domain protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3509 YpsIP31758_3510 YpsIP31758_3510 YpsIP31758_3510 3960764 3960892 - hypothetical protein identified by glimmer%3B putative gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3510 YpsIP31758_3511 YpsIP31758_3511 pemA pemA 3961106 3962191 - pectinesterase A identified by similarity to SP:P07863%3B match to protein family HMM PF01095 gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3511 YpsIP31758_3512 YpsIP31758_3512 YpsIP31758_3512 3963688 3966774 - transporter%2C AcrB/AcrD/AcrF family identified by match to protein family HMM PF00873 gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3512 YpsIP31758_3513 YpsIP31758_3513 YpsIP31758_3513 3966774 3967856 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3513 YpsIP31758_3514 YpsIP31758_3514 YpsIP31758_3514 3967908 3968141 - conserved hypothetical protein identified by similarity to GB:ABA75796.1 gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3514 YpsIP31758_3515 YpsIP31758_3515 YpsIP31758_3515 3968951 3970183 - O-antigen polymerase domain protein identified by match to protein family HMM PF04932 gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3515 YpsIP31758_3516 YpsIP31758_3516 YpsIP31758_3516 3970231 3971394 - putative lipopolysaccharide heptosyltransferase III identified by similarity to SP:P25742%3B match to protein family HMM PF01075%3B match to protein family HMM TIGR02201 gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3516 YpsIP31758_3517 YpsIP31758_3517 YpsIP31758_3517 3971382 3971510 + hypothetical protein identified by glimmer%3B putative gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3517 YpsIP31758_3518 YpsIP31758_3518 YpsIP31758_3518 3971740 3973332 - carbohydrate kinase%2C FGGY family identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782 gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3518 YpsIP31758_3519 YpsIP31758_3519 YpsIP31758_3519 3973503 3974423 - sugar-binding transcriptional regulatory%2C Crp/Fnr family identified by match to protein family HMM PF04198 gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3519 YpsIP31758_3520 YpsIP31758_3520 YpsIP31758_3520 3974422 3974716 + conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3520 YpsIP31758_3521 YpsIP31758_3521 lsrA lsrA 3974826 3976409 + autoinducer AI-2 ABC transporter%2C ATP binding protein identified by similarity to SP:P77257%3B match to protein family HMM PF00005 gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3521 YpsIP31758_3522 YpsIP31758_3522 lsrC lsrC 3976403 3977458 + autoinducer AI-2 ABC transporter%2C permease protein LsrC identified by similarity to SP:P77672%3B match to protein family HMM PF02653 gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3522 YpsIP31758_3523 YpsIP31758_3523 lsrD lsrD 3977455 3978456 + autoinducer AI-2 ABC transporter%2C permease protein LsrD identified by similarity to SP:P0AFS2%3B match to protein family HMM PF02653 gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3523 YpsIP31758_3524 YpsIP31758_3524 lsrB lsrB 3978501 3979520 + autoinducer AI-2 ABC transporter%2C periplasmic AI-2-binding protein identified by similarity to SP:P76142 gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3524 YpsIP31758_3525 YpsIP31758_3525 YpsIP31758_3525 3979576 3980451 + deoC/fbaB aldolase family protein identified by match to protein family HMM PF01791 gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3525 YpsIP31758_3526 YpsIP31758_3526 YpsIP31758_3526 3980516 3980806 + antibiotic biosynthesis monooxygenase domain protein identified by match to protein family HMM PF03992 gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3526 YpsIP31758_3527 YpsIP31758_3527 YpsIP31758_3527 3981129 3981620 + conserved hypothetical protein identified by similarity to SP:P18390 gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3527 YpsIP31758_3528 YpsIP31758_3528 YpsIP31758_3528 3981682 3984258 - phosphocarrier%2C HPr family identified by match to protein family HMM PF00359%3B match to protein family HMM PF00381%3B match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR00848%3B match to protein family HMM TIGR01417 gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3528 YpsIP31758_3529 YpsIP31758_3529 frwC frwC 3984623 3985705 + PTS system%2C fructose-specific EIIC component 2 identified by similarity to SP:P32672%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR01427 gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3529 YpsIP31758_3530 YpsIP31758_3530 frwB frwB 3986269 3986589 + PTS system%2C fructose-specific EIIB component 2 identified by similarity to SP:P69819%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829 gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3530 YpsIP31758_3531 YpsIP31758_3531 YpsIP31758_3531 3987019 3987894 - transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165 gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3531 YpsIP31758_3532 YpsIP31758_3532 YpsIP31758_3532 3986682 3987026 + putative PTS system%2C Fru family%2C IIB component identified by match to protein family HMM PF02379 gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3532 YpsIP31758_3533 YpsIP31758_3533 YpsIP31758_3533 3987896 3988432 - conserved hypothetical protein identified by similarity to GB:AAY93118.1 gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3533 YpsIP31758_3534 YpsIP31758_3534 YpsIP31758_3534 3989138 3990334 + putative membrane protein identified by similarity to SP:Q08022%3B match to protein family HMM PF05987 gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3534 YpsIP31758_3535 YpsIP31758_3535 YpsIP31758_3535 3990363 3991409 + peptidase%2C M48 family identified by match to protein family HMM PF01435 gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3535 YpsIP31758_3536 YpsIP31758_3536 YpsIP31758_3536 3991753 3994344 + type I restriction-modification system%2C M subunit identified by match to protein family HMM PF02384%3B match to protein family HMM TIGR00497 gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3536 YpsIP31758_3537 YpsIP31758_3537 YpsIP31758_3537 3994346 3995605 + putative type I restriction-modification system%2C S subunit gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3537 YpsIP31758_3538 YpsIP31758_3538 YpsIP31758_3538 3995615 3998863 + type I site-specific deoxyribonuclease%2C HsdR family identified by match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00348 gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3538 YpsIP31758_3539 YpsIP31758_3539 YpsIP31758_3539 3998876 3998998 - hypothetical protein identified by glimmer%3B putative gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3539 YpsIP31758_3540 YpsIP31758_3540 YpsIP31758_3540 3999144 4000379 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3540 YpsIP31758_3541 YpsIP31758_3541 YpsIP31758_3541 4000767 4001843 - putative permease identified by match to protein family HMM PF03739 gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3541 YpsIP31758_3542 YpsIP31758_3542 YpsIP31758_3542 4001843 4002937 - putative permease identified by match to protein family HMM PF03739 gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3542 YpsIP31758_3543 YpsIP31758_3543 pepA pepA 4003217 4004728 + cytosol aminopeptidase identified by match to protein family HMM PF00883%3B match to protein family HMM PF02789 gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3543 YpsIP31758_3544 YpsIP31758_3544 holC holC 4004879 4005328 + DNA polymerase III%2C chi subunit identified by similarity to SP:P28905%3B match to protein family HMM PF04364 gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3544 YpsIP31758_3545 YpsIP31758_3545 valS valS 4005341 4008238 + valyl-tRNA synthetase identified by match to protein family HMM PF00133%3B match to protein family HMM TIGR00422 gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3545 YpsIP31758_3546 YpsIP31758_3546 YpsIP31758_3546 4008381 4008884 + acetyltransferase%2C GNAT family identified by similarity to SP:Q08021%3B match to protein family HMM PF00583 gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3546 YpsIP31758_3547 YpsIP31758_3547 YpsIP31758_3547 4008934 4009053 + conserved domain protein identified by similarity to GB:AAM85265.1 gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3547 YpsIP31758_3548 YpsIP31758_3548 YpsIP31758_3548 4009243 4009674 - conserved hypothetical protein identified by match to protein family HMM PF06877 gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3548 YpsIP31758_3549 YpsIP31758_3549 argF argF 4009885 4010892 + ornithine carbamoyltransferase identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00658 gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3549 YpsIP31758_3550 YpsIP31758_3550 YpsIP31758_3550 4011155 4011613 - conserved hypothetical protein identified by similarity to SP:P39335%3B match to protein family HMM PF04074%3B match to protein family HMM TIGR00022 gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3550 YpsIP31758_3551 YpsIP31758_3551 YpsIP31758_3551 4012251 4013819 + ABC dipeptide/oligopeptide/nickel transporter%2C periplasmic dipeptide/oligopeptide/nickel-binding protein identified by match to protein family HMM PF00496 gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3551 YpsIP31758_3552 YpsIP31758_3552 YpsIP31758_3552 4013915 4014964 + ABC dipeptide/oligopeptide/nickel transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3552 YpsIP31758_3553 YpsIP31758_3553 YpsIP31758_3553 4014983 4015819 + ABC dipeptide/oligopeptide/nickel transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3553 YpsIP31758_3554 YpsIP31758_3554 YpsIP31758_3554 4015812 4016690 + ABC dipeptide/oligopeptide/nickel transporter%2C ATP binding protein identified by match to protein family HMM PF00005 gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3554 YpsIP31758_3555 YpsIP31758_3555 YpsIP31758_3555 4016677 4017393 + ABC dipeptide/oligopeptide/nickel transporter%2C ATP binding protein identified by match to protein family HMM PF00005 gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3555 YpsIP31758_3556 YpsIP31758_3556 nrdD nrdD 4017827 4019965 + anaerobic ribonucleoside-triphosphate reductase identified by match to protein family HMM PF01228%3B match to protein family HMM PF03477%3B match to protein family HMM TIGR02487 gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3556 YpsIP31758_3557 YpsIP31758_3557 nrdG nrdG 4020172 4020606 + anaerobic ribonucleoside-triphosphate reductase activating protein identified by match to protein family HMM TIGR02491 gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3557 YpsIP31758_3558 YpsIP31758_3558 YpsIP31758_3558 4020652 4020786 - hypothetical protein identified by glimmer%3B putative gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3558 YpsIP31758_3559 YpsIP31758_3559 phnF phnF 4020966 4021691 + phosphonates metabolism transcriptional regulator PhnF identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702%3B match to protein family HMM TIGR02325 gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3559 YpsIP31758_3560 YpsIP31758_3560 phnG phnG 4021692 4022168 + phosphonate metabolism protein PhnG identified by match to protein family HMM PF06754%3B match to protein family HMM TIGR03293 gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3560 YpsIP31758_3561 YpsIP31758_3561 phnH phnH 4022168 4022794 + phosphonate metabolism protein PhnH identified by match to protein family HMM PF05845 gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3561 YpsIP31758_3562 YpsIP31758_3562 phnI phnI 4022794 4023954 + phosphonate metabolism protein PhnI identified by similarity to SP:P16687%3B match to protein family HMM PF05861 gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3562 YpsIP31758_3563 YpsIP31758_3563 phnJ phnJ 4023947 4024828 + phosphonate metabolism protein PhnJ identified by match to protein family HMM PF06007 gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3563 YpsIP31758_3564 YpsIP31758_3564 phnK phnK 4024831 4025619 + phosphonate C-P lyase system protein PhnK identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR02323 gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3564 YpsIP31758_3565 YpsIP31758_3565 phnL phnL 4026008 4026727 + phosphonate C-P lyase system protein PhnL identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR02324 gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3565 YpsIP31758_3566 YpsIP31758_3566 phnM phnM 4026724 4027860 + phosphonate metabolism protein PhnM identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR02318 gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3566 YpsIP31758_3567 YpsIP31758_3567 YpsIP31758_3567 4027860 4028441 + putative phosphonate metabolism ribose 1%2C5-bisphosphokinase PhnN identified by match to protein family HMM TIGR02322 gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3567 YpsIP31758_3568 YpsIP31758_3568 phnP phnP 4028432 4029184 + phosphonate metabolism protein PhnP identified by similarity to SP:P16692%3B match to protein family HMM PF00753%3B match to protein family HMM TIGR03307 gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3568 YpsIP31758_3569 YpsIP31758_3569 YpsIP31758_3569 4029197 4029835 - conserved hypothetical protein gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3569 YpsIP31758_3570 YpsIP31758_3570 YpsIP31758_3570 4029987 4030430 - conserved hypothetical protein identified by similarity to SP:Q7MZ10 gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3570 YpsIP31758_3571 YpsIP31758_3571 YpsIP31758_3571 4030559 4031725 - conserved hypothetical protein identified by similarity to GB:BAC74609.1 gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3571 YpsIP31758_3572 YpsIP31758_3572 YpsIP31758_3572 4031740 4032834 - carbohydrate uptake ABC transporter-1 (CUT1) family%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459 gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3572 YpsIP31758_3573 YpsIP31758_3573 YpsIP31758_3573 4032846 4033685 - carbohydrate uptake ABC transporter-1 (CUT1) family%2C permease protein identified by match to protein family HMM PF00528 gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3573 YpsIP31758_3574 YpsIP31758_3574 YpsIP31758_3574 4033704 4034588 - carbohydrate uptake ABC transporter-1 (CUT1) family%2C permease protein identified by match to protein family HMM PF00528 gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3574 YpsIP31758_3575 YpsIP31758_3575 YpsIP31758_3575 4034596 4035909 - carbohydrate uptake ABC transporter-1 (CUT1) family%2C periplasmic carbohydrate-binding protein identified by match to protein family HMM PF01547 gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3575 YpsIP31758_3576 YpsIP31758_3576 YpsIP31758_3576 4036473 4037705 + conserved hypothetical protein gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3576 YpsIP31758_3577 YpsIP31758_3577 YpsIP31758_3577 4037729 4039747 + heparinase II/III-like family protein identified by match to protein family HMM PF07940 gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3577 YpsIP31758_3578 YpsIP31758_3578 YpsIP31758_3578 4039975 4040262 + GIY-YIG domain protein identified by match to protein family HMM PF01541 gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3578 YpsIP31758_3579 YpsIP31758_3579 YpsIP31758_3579 4040437 4040940 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3579 YpsIP31758_3580 YpsIP31758_3580 YpsIP31758_3580 4040934 4041455 - SCP-2 sterol transfer family protein identified by match to protein family HMM PF02036 gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3580 YpsIP31758_3581 YpsIP31758_3581 YpsIP31758_3581 4041536 4041661 + hypothetical protein identified by glimmer%3B putative gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3581 YpsIP31758_3582 YpsIP31758_3582 YpsIP31758_3582 4041771 4042766 + peptidase%2C U32 family identified by similarity to GB:AAC64577.1%3B match to protein family HMM PF01136 gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3582 YpsIP31758_3583 YpsIP31758_3583 YpsIP31758_3583 4042778 4043656 + peptidase%2C U32 family identified by match to protein family HMM PF01136 gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3583 YpsIP31758_3584 YpsIP31758_3584 oprM oprM 4043797 4045203 - outer membrane protein oprM identified by similarity to SP:Q51487%3B match to protein family HMM PF02321%3B match to protein family HMM TIGR01845 gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3584 YpsIP31758_3585 YpsIP31758_3585 YpsIP31758_3585 4045205 4048330 - RND transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915 gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3585 YpsIP31758_3586 YpsIP31758_3586 YpsIP31758_3586 4048334 4049494 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3586 YpsIP31758_3587 YpsIP31758_3587 YpsIP31758_3587 4050002 4051057 + Luciferase-like monooxygenase family protein identified by similarity to SP:P0ADV5%3B match to protein family HMM PF00296 gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3587 YpsIP31758_3588 YpsIP31758_3588 YpsIP31758_3588 4051312 4051623 - DNA-binding protein identified by match to protein family HMM PF01381 gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3588 YpsIP31758_3589 YpsIP31758_3589 YpsIP31758_3589 4052058 4052231 - hypothetical protein identified by glimmer%3B putative gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3589 YpsIP31758_3590 YpsIP31758_3590 YpsIP31758_3590 4052251 4054245 - ATP-dependent RNA helicase%2C DEAD/DEAH box family identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880 gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3590 YpsIP31758_3591 YpsIP31758_3591 nlpI nlpI 4054432 4055316 - lipoprotein NlpI identified by similarity to SP:P39833%3B match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3591 YpsIP31758_3592 YpsIP31758_3592 pnp pnp 4055441 4057558 - polyribonucleotide nucleotidyltransferase identified by similarity to SP:P05055%3B match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726 gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3592 YpsIP31758_3593 YpsIP31758_3593 rpsO rpsO 4057822 4058091 - ribosomal protein S15 identified by match to protein family HMM PF00312%3B match to protein family HMM TIGR00952 gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3593 YpsIP31758_3594 YpsIP31758_3594 truB truB 4058213 4059187 - tRNA pseudouridine synthase B identified by similarity to SP:P60340%3B match to protein family HMM PF01509%3B match to protein family HMM TIGR00431 gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3594 YpsIP31758_3595 YpsIP31758_3595 rbfA rbfA 4059187 4059597 - ribosome-binding factor A identified by match to protein family HMM PF02033%3B match to protein family HMM TIGR00082 gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3595 YpsIP31758_3596 YpsIP31758_3596 YpsIP31758_3596 4059663 4062341 - translation initiation factor IF-2 identified by match to protein family HMM PF00009%3B match to protein family HMM PF01926%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487 gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3596 YpsIP31758_3597 YpsIP31758_3597 nusA nusA 4062366 4063853 - transcription termination factor NusA identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR01953%3B match to protein family HMM TIGR01954 gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3597 YpsIP31758_3598 YpsIP31758_3598 YpsIP31758_3598 4063875 4064339 - conserved hypothetical protein identified by similarity to GB:AAS60855.1%3B match to protein family HMM PF02576 gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3598 YpsIP31758_3599 YpsIP31758_3599 YpsIP31758_3599 4064859 4065194 - preprotein translocase%2C SecG subunit identified by match to protein family HMM PF03840%3B match to protein family HMM TIGR00810 gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3599 YpsIP31758_3600 YpsIP31758_3600 glmM glmM 4065417 4066757 - phosphoglucosamine mutase identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880%3B match to protein family HMM TIGR01455 gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3600 YpsIP31758_3601 YpsIP31758_3601 folP folP 4066767 4067600 - dihydropteroate synthase identified by similarity to PDB:1AJ0%3B match to protein family HMM PF00809%3B match to protein family HMM TIGR01496 gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3601 YpsIP31758_3602 YpsIP31758_3602 hflB hflB 4067720 4069654 - ATP-dependent metallopeptidase HflB identified by similarity to SP:P0AAI3%3B match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241 gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3602 YpsIP31758_3603 YpsIP31758_3603 rrmJ rrmJ 4069711 4070340 - ribosomal RNA large subunit methyltransferase J identified by match to protein family HMM PF01728%3B match to protein family HMM TIGR00438 gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3603 YpsIP31758_3604 YpsIP31758_3604 YpsIP31758_3604 4070487 4070780 + conserved hypothetical protein TIGR00253 identified by match to protein family HMM PF01985%3B match to protein family HMM TIGR00253 gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3604 YpsIP31758_3605 YpsIP31758_3605 greA greA 4070908 4071384 - transcription elongation factor GreA identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462 gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3605 YpsIP31758_3606 YpsIP31758_3606 dacB dacB 4071642 4073090 + D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase identified by match to protein family HMM PF02113%3B match to protein family HMM TIGR00666 gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3606 YpsIP31758_3607 YpsIP31758_3607 basR basR 4073096 4073758 + transcriptional regulatory protein BasR/PmrA identified by similarity to SP:P30843%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3607 YpsIP31758_3608 YpsIP31758_3608 basS basS 4073755 4074822 + sensor protein BasS/PmrB identified by similarity to SP:P30844%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3608 YpsIP31758_3609 YpsIP31758_3609 YpsIP31758_3609 4074917 4076089 - GTP-binding protein Obg/CgtA identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR02729 gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3609 YpsIP31758_3610 YpsIP31758_3610 YpsIP31758_3610 4076090 4077076 - integral membrane protein identified by match to protein family HMM PF00892 gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3610 YpsIP31758_3611 YpsIP31758_3611 rpmA rpmA 4077164 4077421 - ribosomal protein L27 identified by match to protein family HMM PF01016%3B match to protein family HMM TIGR00062 gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3611 YpsIP31758_3612 YpsIP31758_3612 rplU rplU 4077441 4077752 - ribosomal protein L21 identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061 gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3612 YpsIP31758_3613 YpsIP31758_3613 ispB ispB 4078012 4078983 + octaprenyl-diphosphate synthase identified by similarity to SP:P0AD57%3B match to protein family HMM PF00348 gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3613 YpsIP31758_3614 YpsIP31758_3614 YpsIP31758_3614 4079080 4079427 - conserved hypothetical protein identified by similarity to GB:CAE16916.1 gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3614 YpsIP31758_3615 YpsIP31758_3615 sfsB sfsB 4079611 4079886 + Sugar fermentation stimulation protein B similar to Ner repressor protein of phage Mu%3B identified by similarity to SP:P0ACH1 gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3615 YpsIP31758_3616 YpsIP31758_3616 mdh mdh 4080320 4081258 - malate dehydrogenase%2C NAD-dependent identified by match to protein family HMM PF00056%3B match to protein family HMM PF02866%3B match to protein family HMM TIGR01772 gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3616 YpsIP31758_3617 YpsIP31758_3617 argR argR 4081722 4082192 + arginine repressor identified by match to protein family HMM PF01316%3B match to protein family HMM PF02863%3B match to protein family HMM TIGR01529 gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3617 YpsIP31758_3618 YpsIP31758_3618 YpsIP31758_3618 4082581 4082844 + conserved hypothetical protein identified by similarity to SP:P64614%3B match to protein family HMM PF07338 gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3618 YpsIP31758_3619 YpsIP31758_3619 YpsIP31758_3619 4082847 4083053 - hypothetical protein identified by glimmer%3B putative gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3619 YpsIP31758_3620 YpsIP31758_3620 mpl mpl 4083140 4084525 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01081 gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3620 YpsIP31758_3621 YpsIP31758_3621 fbp fbp 4084696 4085709 + fructose-1%2C6-bisphosphatase identified by match to protein family HMM PF00316 gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3621 YpsIP31758_3622 YpsIP31758_3622 ppa ppa 4085909 4086436 + inorganic pyrophosphatase identified by match to protein family HMM PF00719 gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3622 YpsIP31758_3623 YpsIP31758_3623 YpsIP31758_3623 4086535 4086891 - conserved hypothetical protein identified by match to protein family HMM PF03674 gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3623 YpsIP31758_3624 YpsIP31758_3624 YpsIP31758_3624 4086894 4090832 - conserved hypothetical protein identified by match to protein family HMM PF04357 gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3624 YpsIP31758_3625 YpsIP31758_3625 YpsIP31758_3625 4090829 4092565 - surface antigen/outer membrane protein%2C OMP85 family identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244 gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3625 YpsIP31758_3626 YpsIP31758_3626 msrA msrA 4092840 4093478 + methionine-S-sulfoxide reductase identified by match to protein family HMM PF01625%3B match to protein family HMM TIGR00401 gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3626 YpsIP31758_3627 YpsIP31758_3627 YpsIP31758_3627 4093756 4095087 + CBS/transporter associated domain protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3627 YpsIP31758_3628 YpsIP31758_3628 YpsIP31758_3628 4095195 4095407 - conserved hypothetical protein identified by match to protein family HMM PF06526 gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3628 YpsIP31758_3629 YpsIP31758_3629 YpsIP31758_3629 4095743 4096306 + conserved hypothetical protein identified by match to protein family HMM TIGR01626 gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3629 YpsIP31758_3630 YpsIP31758_3630 cysQ cysQ 4096309 4097049 - 3'(2')%2C5'-bisphosphate nucleotidase identified by similarity to SP:P22255%3B match to protein family HMM PF00459%3B match to protein family HMM TIGR01331 gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3630 YpsIP31758_3631 YpsIP31758_3631 cpdB cpdB 4097502 4099472 + 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872%3B match to protein family HMM TIGR01390 gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3631 YpsIP31758_3632 YpsIP31758_3632 YpsIP31758_3632 4099601 4100266 + hemerythrin HHE cation binding domain protein identified by match to protein family HMM PF01814%3B match to protein family HMM PF04405 gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3632 YpsIP31758_3633 YpsIP31758_3633 YpsIP31758_3633 4100364 4100984 - peptidyl-prolyl cis-trans isomerase%2C FKBP-type identified by similarity to SP:P0A9L3%3B match to protein family HMM PF00254 gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3633 YpsIP31758_3634 YpsIP31758_3634 YpsIP31758_3634 4101333 4102073 + opacity-associated protein A family identified by match to protein family HMM PF04225 gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3634 YpsIP31758_3635 YpsIP31758_3635 YpsIP31758_3635 4102213 4102668 + hypothetical protein identified by glimmer%3B putative gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3635 YpsIP31758_3636 YpsIP31758_3636 rplI rplI 4102734 4103186 - ribosomal protein L9 identified by match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158 gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3636 YpsIP31758_3637 YpsIP31758_3637 rpsR rpsR 4103226 4103453 - ribosomal protein S18 identified by match to protein family HMM PF01084%3B match to protein family HMM TIGR00165 gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3637 YpsIP31758_3638 YpsIP31758_3638 priB priB 4103458 4103775 - primosomal replication protein n identified by similarity to SP:P07013%3B match to protein family HMM PF00436 gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3638 YpsIP31758_3639 YpsIP31758_3639 rpsF rpsF 4103784 4104176 - ribosomal protein S6 identified by match to protein family HMM PF01250%3B match to protein family HMM TIGR00166 gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3639 YpsIP31758_3640 YpsIP31758_3640 YpsIP31758_3640 4104543 4105292 - phospholipase/carboxylesterase family protein identified by match to protein family HMM PF02230 gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3640 YpsIP31758_3641 YpsIP31758_3641 YpsIP31758_3641 4105452 4105580 - hypothetical protein identified by glimmer%3B putative gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3641 YpsIP31758_3642 YpsIP31758_3642 YpsIP31758_3642 4105483 4105794 + putative lipoprotein identified by match to protein family HMM PF07338 gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3642 YpsIP31758_3643 YpsIP31758_3643 YpsIP31758_3643 4105866 4107509 - acyl-CoA dehydrogenase family protein identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028 gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3643 YpsIP31758_3644 YpsIP31758_3644 YpsIP31758_3644 4107917 4108657 - RNA methyltransferase%2C TrmH family%2C group 3 identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186 gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3644 YpsIP31758_3645 YpsIP31758_3645 YpsIP31758_3645 4108631 4108774 + hypothetical protein identified by glimmer%3B putative gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3645 YpsIP31758_3646 YpsIP31758_3646 rnr rnr 4108775 4111309 - ribonuclease R identified by match to protein family HMM PF00575%3B match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00358%3B match to protein family HMM TIGR02063 gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3646 YpsIP31758_3647 YpsIP31758_3647 nsrR nsrR 4111550 4111975 - nitrite-sensitive repressor NsrR identified by similarity to SP:P21498%3B match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3647 YpsIP31758_3648 YpsIP31758_3648 purA purA 4112364 4113662 - adenylosuccinate synthetase identified by match to protein family HMM PF00709%3B match to protein family HMM TIGR00184 gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3648 YpsIP31758_3649 YpsIP31758_3649 YpsIP31758_3649 4113762 4114070 - putative membrane protein identified by similarity to SP:P39289 gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3649 YpsIP31758_3650 YpsIP31758_3650 hflC hflC 4114134 4115138 - HflC protein identified by match to protein family HMM PF01145%3B match to protein family HMM TIGR01932 gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3650 YpsIP31758_3651 YpsIP31758_3651 hflK hflK 4115142 4116404 - HflK protein identified by match to protein family HMM PF01145%3B match to protein family HMM TIGR01933 gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3651 YpsIP31758_3652 YpsIP31758_3652 hflX hflX 4116645 4117931 - GTP-binding protein HflX identified by match to protein family HMM PF01926 gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3652 YpsIP31758_3653 YpsIP31758_3653 hfq hfq 4118030 4118335 - RNA chaperone Hfq identified by similarity to SP:P0A6X3%3B match to protein family HMM PF01423%3B match to protein family HMM TIGR02383 gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3653 YpsIP31758_3654 YpsIP31758_3654 miaA miaA 4118452 4119393 - tRNA delta(2)-isopentenylpyrophosphate transferase identified by match to protein family HMM PF01715%3B match to protein family HMM TIGR00174 gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3654 YpsIP31758_3655 YpsIP31758_3655 mutL mutL 4119386 4121293 - DNA mismatch repair protein MutL identified by similarity to SP:P23367%3B match to protein family HMM PF01119%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00585 gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3655 YpsIP31758_3656 YpsIP31758_3656 YpsIP31758_3656 4121309 4123090 - N-acetylmuramoyl-L-alanine amidase%2C family 3 identified by match to protein family HMM PF01476%3B match to protein family HMM PF01520 gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3656 YpsIP31758_3657 YpsIP31758_3657 YpsIP31758_3657 4123230 4123700 - conserved hypothetical protein TIGR00150 identified by match to protein family HMM PF02367%3B match to protein family HMM TIGR00150 gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3657 YpsIP31758_3658 YpsIP31758_3658 YpsIP31758_3658 4123711 4125225 - YjeF family protein identified by match to protein family HMM PF01256%3B match to protein family HMM PF03853%3B match to protein family HMM TIGR00196%3B match to protein family HMM TIGR00197 gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3658 YpsIP31758_3659 YpsIP31758_3659 YpsIP31758_3659 4126442 4126555 - hypothetical protein identified by glimmer%3B putative gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3659 YpsIP31758_3660 YpsIP31758_3660 YpsIP31758_3660 4125224 4126459 + iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00276 gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3660 YpsIP31758_3661 YpsIP31758_3661 orn orn 4127412 4127957 - oligoribonuclease identified by similarity to SP:P0A784%3B match to protein family HMM PF00929 gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3661 YpsIP31758_3662 YpsIP31758_3662 rsgA rsgA 4128157 4129209 + ribosome small subunit-dependent GTPase A identified by match to protein family HMM PF03193%3B match to protein family HMM TIGR00157 gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3662 YpsIP31758_3663 YpsIP31758_3663 psd psd 4129657 4130538 + phosphatidylserine decarboxylase identified by match to protein family HMM PF02666%3B match to protein family HMM TIGR00163 gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3663 YpsIP31758_3664 YpsIP31758_3664 YpsIP31758_3664 4130580 4133921 + mechanosensitive ion channel domain protein identified by match to protein family HMM PF00924 gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3664 YpsIP31758_3665 YpsIP31758_3665 genX genX 4134183 4135160 - lysyl-tRNA synthetase-like protein identified by match to protein family HMM PF00152%3B match to protein family HMM PF00587%3B match to protein family HMM TIGR00462 gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3665 YpsIP31758_3666 YpsIP31758_3666 YpsIP31758_3666 4135320 4135511 - putative membrane protein gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3666 YpsIP31758_3667 YpsIP31758_3667 frdA frdA 4135618 4137441 + fumarate reductase%2C flavoprotein subunit identified by match to protein family HMM PF00890%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01176%3B match to protein family HMM TIGR01812 gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3667 YpsIP31758_3668 YpsIP31758_3668 frdB frdB 4137434 4138168 + fumarate reductase%2C iron-sulfur protein identified by similarity to SP:P20921%3B match to protein family HMM PF00037%3B match to protein family HMM PF00111%3B match to protein family HMM TIGR00384 gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3668 YpsIP31758_3669 YpsIP31758_3669 frdC frdC 4138185 4138577 + fumarate reductase%2C C subunit identified by match to protein family HMM PF02300 gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3669 YpsIP31758_3670 YpsIP31758_3670 frdD frdD 4138594 4138950 + fumarate reductase%2C D subunit identified by match to protein family HMM PF02313 gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3670 YpsIP31758_3671 YpsIP31758_3671 sugE sugE 4139115 4139429 - quaternary ammonium compound-resistance protein SugE identified by similarity to SP:P69937%3B match to protein family HMM PF00893 gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3671 YpsIP31758_3672 YpsIP31758_3672 efp efp 4139676 4140242 - translation elongation factor P identified by match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM TIGR00038 gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3672 YpsIP31758_3673 YpsIP31758_3673 YpsIP31758_3673 4140278 4141306 + iron-sulfur cluster-binding protein%2C KamA family identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00238 gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3673 YpsIP31758_3674 YpsIP31758_3674 YpsIP31758_3674 4141778 4142176 - conserved hypothetical protein identified by similarity to GB:CAE16504.1 gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3674 YpsIP31758_3675 YpsIP31758_3675 groL groL 4142801 4144447 - chaperonin GroL identified by similarity to SP:P0A6F5%3B match to protein family HMM PF00118%3B match to protein family HMM TIGR02348 gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3675 YpsIP31758_3676 YpsIP31758_3676 groS groS 4144494 4144787 - chaperonin GroS identified by match to protein family HMM PF00166 gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3676 YpsIP31758_3677 YpsIP31758_3677 fxsA fxsA 4145042 4145629 - protein fxsA identified by similarity to SP:P37147%3B match to protein family HMM PF04186 gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3677 YpsIP31758_3678 YpsIP31758_3678 aspA aspA 4146053 4147489 + aspartate ammonia-lyase identified by similarity to SP:P33109%3B match to protein family HMM PF00206%3B match to protein family HMM TIGR00839 gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3678 YpsIP31758_3679 YpsIP31758_3679 dcuA dcuA 4147609 4148910 + anaerobic C4-dicarboxylate transporter DcuA identified by similarity to SP:P0ABN5%3B match to protein family HMM PF03605%3B match to protein family HMM TIGR00770 gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3679 YpsIP31758_3680 YpsIP31758_3680 cutA cutA 4149095 4149454 + divalent-cation tolerance protein cutA identified by similarity to SP:P69488%3B match to protein family HMM PF03091 gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3680 YpsIP31758_3681 YpsIP31758_3681 dsbD dsbD 4149430 4151217 + thiol:disulfide interchange protein DsbD identified by similarity to SP:P36655%3B match to protein family HMM PF00085%3B match to protein family HMM PF02683 gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3681 YpsIP31758_3682 YpsIP31758_3682 fdhF fdhF 4151279 4153426 - anaerobic formate dehydrogenase%2C alpha subunit%2C archaeal-type identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01591 gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3682 YpsIP31758_3683 YpsIP31758_3683 YpsIP31758_3683 4153449 4154006 - iron-sulfur cluster-binding protein identified by similarity to SP:P0AAK4%3B match to protein family HMM PF00037 gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3683 YpsIP31758_3684 YpsIP31758_3684 YpsIP31758_3684 4154029 4156044 - putative anaerobic formate dehydrogenase%2C iron-sulfur subunit identified by match to protein family HMM PF00037%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01318 gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3684 YpsIP31758_3685 YpsIP31758_3685 YpsIP31758_3685 4156464 4157039 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3685 YpsIP31758_3686 YpsIP31758_3686 YpsIP31758_3686 4157513 4158481 - putative phage integrase identified by match to protein family HMM PF00589 gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3686 YpsIP31758_3687 YpsIP31758_3687 YpsIP31758_3687 4158523 4159719 - putative helicase identified by match to protein family HMM PF07514 gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3687 YpsIP31758_3688 YpsIP31758_3688 YpsIP31758_3688 4159911 4160558 + conserved domain protein identified by similarity to GB:CAD09331.1 gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3688 YpsIP31758_3689 YpsIP31758_3689 YpsIP31758_3689 4160572 4161477 - conserved hypothetical protein gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3689 YpsIP31758_3690 YpsIP31758_3690 YpsIP31758_3690 4161587 4162558 - antirestriction protein identified by similarity to SP:P27189%3B similarity to GB:AAP70295.1 gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3690 YpsIP31758_3691 YpsIP31758_3691 YpsIP31758_3691 4163226 4163657 + conserved hypothetical protein identified by similarity to GB:CAE16653.1 gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3691 YpsIP31758_3692 YpsIP31758_3692 YpsIP31758_3692 4163688 4167947 + RHS/YD repeat protein identified by match to protein family HMM PF03527%3B match to protein family HMM PF05488%3B match to protein family HMM PF05593%3B match to protein family HMM TIGR01643 gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3692 YpsIP31758_3693 YpsIP31758_3693 YpsIP31758_3693 4167963 4168580 + conserved hypothetical protein identified by similarity to GB:CAE16649.1 gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3693 YpsIP31758_3694 YpsIP31758_3694 YpsIP31758_3694 4168820 4169257 + hypothetical protein identified by glimmer%3B putative gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3694 YpsIP31758_3695 YpsIP31758_3695 YpsIP31758_3695 4169387 4169941 + conserved hypothetical protein identified by similarity to GB:CAE16650.1 gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3695 YpsIP31758_3696 YpsIP31758_3696 YpsIP31758_3696 4170053 4170577 + conserved hypothetical protein identified by similarity to GB:AAN50778.1 gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3696 YpsIP31758_3697 YpsIP31758_3697 YpsIP31758_3697 4170921 4171811 - conserved hypothetical protein identified by similarity to RF:YP_048704.1%3B match to protein family HMM PF00589 gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3697 YpsIP31758_3698 YpsIP31758_3698 YpsIP31758_3698 4172940 4173236 + conserved domain protein identified by similarity to GB:AAP94110.1 gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3698 YpsIP31758_3699 YpsIP31758_3699 YpsIP31758_3699 4173268 4174791 - putative membrane protein gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3699 YpsIP31758_3700 YpsIP31758_3700 YpsIP31758_3700 4174791 4176197 - conserved hypothetical protein identified by similarity to GB:AAX39459.1 gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3700 YpsIP31758_3701 YpsIP31758_3701 YpsIP31758_3701 4176218 4177171 - conserved hypothetical protein identified by match to protein family HMM PF07513 gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3701 YpsIP31758_3702 YpsIP31758_3702 YpsIP31758_3702 4177168 4177572 - conserved hypothetical protein identified by match to protein family HMM PF07511 gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3702 YpsIP31758_3703 YpsIP31758_3703 YpsIP31758_3703 4178309 4180441 + conserved hypothetical protein identified by similarity to GB:AAY37683.1 gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3703 YpsIP31758_3704 YpsIP31758_3704 YpsIP31758_3704 4181327 4182028 + putative lipoprotein identified by similarity to GB:AAY47222.1 gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3704 YpsIP31758_3705 YpsIP31758_3705 YpsIP31758_3705 4182460 4185306 - conserved hypothetical protein identified by similarity to GB:AAN62279.1 gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3705 YpsIP31758_3706 YpsIP31758_3706 YpsIP31758_3706 4185306 4185707 - putative lipoprotein gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3706 YpsIP31758_3707 YpsIP31758_3707 YpsIP31758_3707 4185720 4187237 - conserved hypothetical protein identified by similarity to GB:CAE13378.1 gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3707 YpsIP31758_3708 YpsIP31758_3708 YpsIP31758_3708 4187234 4188100 - conserved hypothetical protein identified by similarity to GB:CAD09344.1 gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3708 YpsIP31758_3709 YpsIP31758_3709 YpsIP31758_3709 4188097 4188750 - conserved hypothetical protein identified by similarity to GB:CAD09343.1 gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3709 YpsIP31758_3710 YpsIP31758_3710 YpsIP31758_3710 4188747 4189121 - conserved hypothetical protein identified by similarity to GB:AAT47189.1 gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3710 YpsIP31758_3711 YpsIP31758_3711 YpsIP31758_3711 4189131 4189481 - conserved hypothetical protein identified by similarity to GB:CAE13375.1 gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3711 YpsIP31758_3712 YpsIP31758_3712 YpsIP31758_3712 4189497 4189742 - hypothetical protein identified by glimmer%3B putative gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3712 YpsIP31758_3713 YpsIP31758_3713 YpsIP31758_3713 4189742 4190050 - plasmid conserved hypothetical protein%2C RAQPRD family identified by match to protein family HMM TIGR01690 gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3713 YpsIP31758_3714 YpsIP31758_3714 YpsIP31758_3714 4190571 4191458 - hypothetical protein identified by glimmer%3B putative gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3714 YpsIP31758_3715 YpsIP31758_3715 YpsIP31758_3715 4191576 4193381 - conserved hypothetical protein identified by similarity to RF:NP_936746.1 gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3715 YpsIP31758_3716 YpsIP31758_3716 YpsIP31758_3716 4193378 4194616 - conserved hypothetical protein identified by similarity to RF:NP_936745.1 gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3716 YpsIP31758_3717 YpsIP31758_3717 YpsIP31758_3717 4194737 4195489 - conserved hypothetical protein gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3717 YpsIP31758_3718 YpsIP31758_3718 YpsIP31758_3718 4195489 4197609 - conserved hypothetical protein identified by similarity to GB:CAD09338.1 gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3718 YpsIP31758_3719 YpsIP31758_3719 YpsIP31758_3719 4197668 4198189 - conserved hypothetical protein identified by similarity to GB:CAD09336.1 gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3719 YpsIP31758_3720 YpsIP31758_3720 YpsIP31758_3720 4198186 4198824 - transglycosylase SLT domain protein identified by match to protein family HMM PF01464 gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3720 YpsIP31758_3721 YpsIP31758_3721 YpsIP31758_3721 4198803 4199621 - conserved hypothetical protein identified by similarity to GB:CAD09334.1 gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3721 YpsIP31758_3722 YpsIP31758_3722 YpsIP31758_3722 4199713 4200045 - conserved hypothetical protein identified by similarity to GB:CAE13392.1 gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3722 YpsIP31758_3723 YpsIP31758_3723 YpsIP31758_3723 4200035 4200241 - hypothetical protein identified by glimmer%3B putative gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3723 YpsIP31758_3724 YpsIP31758_3724 YpsIP31758_3724 4200453 4200809 + DNA binding protein identified by match to protein family HMM PF01381 gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3724 YpsIP31758_3725 YpsIP31758_3725 YpsIP31758_3725 4200871 4201002 + hypothetical protein identified by glimmer%3B putative gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3725 YpsIP31758_3726 YpsIP31758_3726 YpsIP31758_3726 4201125 4202057 - putative transposase identified by match to protein family HMM PF04754%3B match to protein family HMM TIGR01784 gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3726 YpsIP31758_3727 YpsIP31758_3727 YpsIP31758_3727 4202151 4203428 - bacterial shufflon protein identified by match to protein family HMM PF04917 gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3727 YpsIP31758_3728 YpsIP31758_3728 YpsIP31758_3728 4203432 4204100 - type IV prepilin peptidase identified by match to protein family HMM PF01478 gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3728 YpsIP31758_3729 YpsIP31758_3729 pilS pilS 4204097 4204684 - type IV pilus biogenesis protein identified by similarity to SP:P33553 gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3729 YpsIP31758_3730 YpsIP31758_3730 pilR pilR 4204699 4205799 - type IV pilus biogenesis protein PilR identified by match to protein family HMM PF00482 gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3730 YpsIP31758_3731 YpsIP31758_3731 YpsIP31758_3731 4205801 4207354 - type IV secretion system protein identified by match to protein family HMM PF00437 gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3731 YpsIP31758_3732 YpsIP31758_3732 pilP1 pilP1 4207364 4207858 - type IV pilus biogenesis protein PilP identified by match to protein family HMM TIGR03021 gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3732 YpsIP31758_3733 YpsIP31758_3733 YpsIP31758_3733 4207845 4209182 - pilin accessory protein PilO identified by match to protein family HMM PF06864 gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3733 YpsIP31758_3734 YpsIP31758_3734 YpsIP31758_3734 4209185 4210777 - type IVB pilus formation outer membrane protein%2C R64 PilN family identified by match to protein family HMM PF00263%3B match to protein family HMM PF07655%3B match to protein family HMM TIGR02520 gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3734 YpsIP31758_3735 YpsIP31758_3735 YpsIP31758_3735 4210791 4211228 - PilM protein identified by match to protein family HMM PF07419 gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3735 YpsIP31758_3736 YpsIP31758_3736 YpsIP31758_3736 4211230 4212300 - pilus biogenesis protein identified by similarity to GB:AAL05516.1 gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3736 YpsIP31758_3737 YpsIP31758_3737 YpsIP31758_3737 4212438 4212824 - PIN domain protein identified by match to protein family HMM PF01850 gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3737 YpsIP31758_3738 YpsIP31758_3738 YpsIP31758_3738 4212821 4213054 - prevent-host-death family protein identified by match to protein family HMM TIGR01552 gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3738 YpsIP31758_3739 YpsIP31758_3739 YpsIP31758_3739 4213225 4213656 - conserved hypothetical protein identified by similarity to GB:CAE16490.1%3B match to protein family HMM PF01724 gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3739 YpsIP31758_3740 YpsIP31758_3740 YpsIP31758_3740 4213859 4214401 - conserved hypothetical protein identified by similarity to GB:CAD09313.1 gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3740 YpsIP31758_3741 YpsIP31758_3741 YpsIP31758_3741 4214398 4214517 - hypothetical protein identified by glimmer%3B putative gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3741 YpsIP31758_3742 YpsIP31758_3742 YpsIP31758_3742 4214702 4215460 - conserved hypothetical protein identified by similarity to GB:AAO71695.1 gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3742 YpsIP31758_3743 YpsIP31758_3743 YpsIP31758_3743 4215620 4216819 - conserved hypothetical protein identified by similarity to GB:CAG73439.1 gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3743 YpsIP31758_3744 YpsIP31758_3744 YpsIP31758_3744 4217055 4217216 - conserved hypothetical protein identified by similarity to GB:CAG73438.1 gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3744 YpsIP31758_3745 YpsIP31758_3745 YpsIP31758_3745 4217285 4217866 - conserved hypothetical protein identified by similarity to GB:CAE13329.1 gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3745 YpsIP31758_3746 YpsIP31758_3746 YpsIP31758_3746 4217863 4219509 - conserved hypothetical protein identified by similarity to GB:CAE92953.1 gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3746 YpsIP31758_3747 YpsIP31758_3747 dnaB2 dnaB2 4219538 4220899 - replicative DNA helicase identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665 gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3747 YpsIP31758_3748 YpsIP31758_3748 YpsIP31758_3748 4220892 4221773 - conserved hypothetical protein identified by similarity to RF:YP_048634.1 gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3748 YpsIP31758_3749 YpsIP31758_3749 YpsIP31758_3749 4222334 4224904 - viral enhancin protein identified by match to protein family HMM PF03272 gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3749 YpsIP31758_3750 YpsIP31758_3750 YpsIP31758_3750 4224919 4225086 - conserved hypothetical protein identified by similarity to GB:AAV33283.1 gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3750 YpsIP31758_3751 YpsIP31758_3751 YpsIP31758_3751 4225316 4225741 + conserved hypothetical protein identified by similarity to RF:YP_308821.1 gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3751 YpsIP31758_3752 YpsIP31758_3752 rhaT rhaT 4226621 4227655 + L-rhamnose-proton symporter identified by similarity to SP:P27125%3B match to protein family HMM PF06379%3B match to protein family HMM TIGR00776 gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3752 YpsIP31758_3753 YpsIP31758_3753 rhaR rhaR 4227804 4228676 - transcriptional activator RhaR identified by similarity to SP:P09378%3B match to protein family HMM PF00165%3B match to protein family HMM PF02311 gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3753 YpsIP31758_3754 YpsIP31758_3754 rhaS rhaS 4228810 4229631 - transcriptional activator RhaS identified by similarity to SP:P09377%3B match to protein family HMM PF00165%3B match to protein family HMM PF02311%3B match to protein family HMM PF07883 gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3754 YpsIP31758_3755 YpsIP31758_3755 rhaB rhaB 4229953 4231515 + rhamnulokinase identified by similarity to SP:P32171%3B match to protein family HMM PF00370%3B match to protein family HMM TIGR02627 gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3755 YpsIP31758_3756 YpsIP31758_3756 rhaA rhaA 4231512 4232768 + L-rhamnose isomerase identified by similarity to SP:P32170%3B match to protein family HMM PF06134%3B match to protein family HMM TIGR01748 gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3756 YpsIP31758_3757 YpsIP31758_3757 rhaD rhaD 4232781 4233605 + rhamnulose-1-phosphate aldolase identified by similarity to SP:P32169%3B match to protein family HMM PF00596%3B match to protein family HMM TIGR02624 gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3757 YpsIP31758_3758 YpsIP31758_3758 fucO fucO 4233672 4234820 + lactaldehyde reductase identified by match to protein family HMM PF00465%3B match to protein family HMM TIGR02638 gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3758 YpsIP31758_3759 YpsIP31758_3759 rhaU rhaU 4234834 4235148 + L-rhamnose 1-epimerase identified by match to protein family HMM PF05336%3B match to protein family HMM TIGR02625 gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3759 YpsIP31758_3760 YpsIP31758_3760 ssb ssb 4235360 4235908 - single-strand binding protein identified by similarity to SP:P28046%3B match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3760 YpsIP31758_3761 YpsIP31758_3761 uvrA uvrA 4236507 4239350 + UvrABC system%2C A protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630 gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3761 YpsIP31758_3762 YpsIP31758_3762 YpsIP31758_3762 4239443 4239802 - conserved hypothetical protein identified by similarity to SP:P32699%3B match to protein family HMM PF04237 gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3762 YpsIP31758_3763 YpsIP31758_3763 tyrB tyrB 4240329 4241522 - aromatic-amino-acid aminotransferase identified by similarity to SP:P04693%3B match to protein family HMM PF00155 gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3763 YpsIP31758_3764 YpsIP31758_3764 alr2 alr2 4241708 4242787 - alanine racemase identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492 gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3764 YpsIP31758_3765 YpsIP31758_3765 dnaB1 dnaB1 4242884 4244290 - replicative DNA helicase identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665 gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3765 YpsIP31758_3766 YpsIP31758_3766 YpsIP31758_3766 4244622 4245605 + quinone oxidoreductase identified by similarity to SP:P40783%3B match to protein family HMM PF00107 gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3766 YpsIP31758_3767 YpsIP31758_3767 pspG pspG 4245950 4246168 - phage shock protein G identified by similarity to SP:P32696%3B match to protein family HMM TIGR02975 gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3767 YpsIP31758_3768 YpsIP31758_3768 dusA dusA 4246693 4247730 - tRNA-dihydrouridine synthase A identified by similarity to SP:P32695%3B match to protein family HMM PF01207%3B match to protein family HMM TIGR00742 gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3768 YpsIP31758_3769 YpsIP31758_3769 zur zur 4247982 4248494 + zinc uptake regulation protein identified by similarity to SP:P0AC51%3B match to protein family HMM PF01475 gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3769 YpsIP31758_3770 YpsIP31758_3770 lexA lexA 4248675 4249283 - LexA repressor identified by match to protein family HMM PF00717%3B match to protein family HMM PF01726%3B match to protein family HMM TIGR00498 gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3770 YpsIP31758_3771 YpsIP31758_3771 dgkA dgkA 4249408 4249779 - diacylglycerol kinase identified by similarity to SP:P0ABN1%3B match to protein family HMM PF01219 gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3771 YpsIP31758_3772 YpsIP31758_3772 plsB plsB 4249907 4252384 + glycerol-3-phosphate acyltransferase identified by similarity to SP:P0A7A7%3B match to protein family HMM PF01553 gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3772 YpsIP31758_3773 YpsIP31758_3773 ubiA ubiA 4252565 4253431 - 4-hydroxybenzoate polyprenyl transferase identified by similarity to SP:P26601%3B match to protein family HMM PF01040%3B match to protein family HMM TIGR01474 gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3773 YpsIP31758_3774 YpsIP31758_3774 ubiC ubiC 4253597 4254121 - chorismate--pyruvate lyase identified by similarity to SP:P26602%3B match to protein family HMM PF04345 gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3774 YpsIP31758_3775 YpsIP31758_3775 YpsIP31758_3775 4254954 4258811 + putative autotransporter protein identified by match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3775 YpsIP31758_3776 YpsIP31758_3776 YpsIP31758_3776 4259133 4261190 - putative oxidoreductase%2C FAD-binding identified by similarity to GB:AAU48385.1%3B match to protein family HMM PF00041%3B match to protein family HMM PF01565%3B match to protein family HMM PF02839%3B match to protein family HMM PF08031 gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3776 YpsIP31758_3777 YpsIP31758_3777 YpsIP31758_3777 4261479 4261601 - hypothetical protein identified by glimmer%3B putative gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3777 YpsIP31758_3778 YpsIP31758_3778 YpsIP31758_3778 4261897 4262088 + hypothetical protein identified by glimmer%3B putative gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3778 YpsIP31758_3779 YpsIP31758_3779 YpsIP31758_3779 4262193 4263611 - conserved domain protein identified by similarity to GB:CAD85609.1 gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3779 YpsIP31758_3780 YpsIP31758_3780 YpsIP31758_3780 4264704 4264901 - putative membrane protein gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3780 YpsIP31758_3781 YpsIP31758_3781 YpsIP31758_3781 4264967 4265659 - putative gram-negative pili assembly chaperone gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3781 YpsIP31758_3782 YpsIP31758_3782 YpsIP31758_3782 4265782 4268160 - fimbrial usher protein identified by match to protein family HMM PF00577 gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3782 YpsIP31758_3783 YpsIP31758_3783 YpsIP31758_3783 4268411 4269049 - conserved hypothetical protein identified by similarity to GB:ABA51426.1%3B match to protein family HMM PF06551 gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3783 YpsIP31758_3784 YpsIP31758_3784 terE terE 4269762 4270337 - tellurium resistance protein identified by similarity to SP:Q52358%3B match to protein family HMM PF02342 gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3784 YpsIP31758_3785 YpsIP31758_3785 terD terD 4270521 4271099 - tellurium resistance protein identified by similarity to SP:P18781%3B match to protein family HMM PF02342 gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3785 YpsIP31758_3786 YpsIP31758_3786 terC terC 4271163 4272200 - tellurite resistance protein identified by similarity to GB:AAD47287.1%3B match to protein family HMM PF03741 gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3786 YpsIP31758_3787 YpsIP31758_3787 terB terB 4272222 4272677 - tellurite resistance protein identified by similarity to GB:AAD47286.1%3B match to protein family HMM PF05099 gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3787 YpsIP31758_3788 YpsIP31758_3788 terA terA 4272710 4273894 - tellurite resistance protein identified by similarity to GB:AAD47285.1%3B match to protein family HMM PF02342 gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3788 YpsIP31758_3789 YpsIP31758_3789 terZ terZ 4273894 4274487 - tellurium resistance protein identified by similarity to SP:Q52353%3B match to protein family HMM PF02342 gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3789 YpsIP31758_3790 YpsIP31758_3790 YpsIP31758_3790 4274763 4275824 + conserved hypothetical protein identified by similarity to GB:CAI61976.2 gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3790 YpsIP31758_3791 YpsIP31758_3791 YpsIP31758_3791 4275836 4276972 + conserved hypothetical protein identified by similarity to GB:BAB34772.1 gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3791 YpsIP31758_3792 YpsIP31758_3792 YpsIP31758_3792 4276965 4277777 + conserved hypothetical protein identified by similarity to GB:AAR07669.1 gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3792 YpsIP31758_3793 YpsIP31758_3793 YpsIP31758_3793 4277770 4278849 + conserved hypothetical protein identified by similarity to GB:CAI61973.1 gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3793 YpsIP31758_3794 YpsIP31758_3794 YpsIP31758_3794 4278849 4279808 + conserved hypothetical protein identified by similarity to GB:BAB34768.1 gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3794 YpsIP31758_3795 YpsIP31758_3795 YpsIP31758_3795 4280205 4280693 + conserved hypothetical protein identified by similarity to GB:BAB34766.1 gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3795 YpsIP31758_3796 YpsIP31758_3796 YpsIP31758_3796 4281008 4281808 + Methylenetetrahydrofolate reductase identified by match to protein family HMM PF02219 gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3796 YpsIP31758_3797 YpsIP31758_3797 YpsIP31758_3797 4282149 4283462 + radical SAM domain/HemN domain protein identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969 gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3797 YpsIP31758_3798 YpsIP31758_3798 YpsIP31758_3798 4283513 4284022 + conserved hypothetical protein identified by match to protein family HMM PF06228 gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3798 YpsIP31758_3799 YpsIP31758_3799 YpsIP31758_3799 4284056 4284706 + NmrA family protein identified by match to protein family HMM PF05368 gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3799 YpsIP31758_3800 YpsIP31758_3800 hemP hemP 4284792 4284983 + hemin uptake protein identified by similarity to SP:P31516 gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3800 YpsIP31758_3801 YpsIP31758_3801 hmuR hmuR 4285114 4287144 + TonB-dependent hemin receptor HmuR identified by similarity to SP:Q56989%3B match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01785%3B match to protein family HMM TIGR01786 gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3801 YpsIP31758_3802 YpsIP31758_3802 hmuS hmuS 4287263 4288300 + hemin transport protein HmuS identified by similarity to SP:Q56990%3B match to protein family HMM PF05171 gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3802 YpsIP31758_3803 YpsIP31758_3803 hmuT hmuT 4288297 4289136 + hemin ABC transporter%2C periplasmic hemin-binding protein identified by similarity to SP:Q56991%3B match to protein family HMM PF01497 gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3803 YpsIP31758_3804 YpsIP31758_3804 hmuU hmuU 4289133 4290137 + hemin ABC transporter%2C permease protein HmuU identified by similarity to SP:Q56992%3B match to protein family HMM PF01032 gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3804 YpsIP31758_3805 YpsIP31758_3805 hmuV hmuV 4290130 4290930 + hemin ABC transporter%2C ATP-binding protein identified by similarity to SP:Q56993%3B match to protein family HMM PF00005 gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3805 YpsIP31758_3806 YpsIP31758_3806 metC2 metC2 4291071 4292252 - cystathionine beta-lyase identified by match to protein family HMM PF01053%3B match to protein family HMM TIGR01324 gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3806 YpsIP31758_3807 YpsIP31758_3807 YpsIP31758_3807 4292298 4293584 - putative serine transporter gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3807 YpsIP31758_3808 YpsIP31758_3808 YpsIP31758_3808 4293754 4294737 + substrate-binding transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3808 YpsIP31758_3809 YpsIP31758_3809 YpsIP31758_3809 4294815 4295084 - conserved hypothetical protein identified by match to protein family HMM PF01206 gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3809 YpsIP31758_3810 YpsIP31758_3810 YpsIP31758_3810 4295081 4296295 - YeeE/YedE family protein identified by match to protein family HMM PF04143 gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3810 YpsIP31758_3811 YpsIP31758_3811 YpsIP31758_3811 4296675 4297745 - type III secretion protein%2C YscU/HrpY family identified by match to protein family HMM PF01312%3B match to protein family HMM TIGR01404 gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3811 YpsIP31758_3812 YpsIP31758_3812 epaR epaR 4297732 4298526 - type III secretion apparatus protein SpaR/YscT/HrcT identified by match to protein family HMM PF01311%3B match to protein family HMM TIGR01401 gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3812 YpsIP31758_3813 YpsIP31758_3813 YpsIP31758_3813 4298528 4298809 - type III secretion protein%2C HrpO family identified by match to protein family HMM PF01313%3B match to protein family HMM TIGR01403 gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3813 YpsIP31758_3814 YpsIP31758_3814 epaP epaP 4298818 4299468 - type III secretion apparatus protein%2C YscR/HrcR family identified by match to protein family HMM PF00813%3B match to protein family HMM TIGR01102 gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3814 YpsIP31758_3815 YpsIP31758_3815 epaO epaO 4299595 4300557 - type III secretion apparatus protein%2C YscQ/HrcQ family identified by match to protein family HMM PF01052%3B match to protein family HMM TIGR02551 gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3815 YpsIP31758_3816 YpsIP31758_3816 YpsIP31758_3816 4300535 4300933 - hypothetical protein identified by glimmer%3B putative gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3816 YpsIP31758_3817 YpsIP31758_3817 YpsIP31758_3817 4300914 4301315 - type III secretion system protein identified by similarity to GB:ABA39814.1 gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3817 YpsIP31758_3818 YpsIP31758_3818 YpsIP31758_3818 4301312 4302649 - type III secretion apparatus H+-transporting two-sector ATPase identified by match to protein family HMM PF00006%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01026%3B match to protein family HMM TIGR02546 gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3818 YpsIP31758_3819 YpsIP31758_3819 YpsIP31758_3819 4302636 4304684 - type III secretion protein%2C HrcV family identified by match to protein family HMM PF00771%3B match to protein family HMM TIGR01399 gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3819 YpsIP31758_3820 YpsIP31758_3820 YpsIP31758_3820 4304677 4305324 - type III secretion apparatus protein%2C HrpE/YscL family identified by match to protein family HMM TIGR02499 gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3820 YpsIP31758_3821 YpsIP31758_3821 YpsIP31758_3821 4305321 4305914 - conserved hypothetical protein identified by similarity to GB:AAQ60259.1 gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3821 YpsIP31758_3822 YpsIP31758_3822 YpsIP31758_3822 4306109 4306840 - type III secretion apparatus lipoprotein%2C YscJ/HrcJ family identified by match to protein family HMM PF01514%3B match to protein family HMM TIGR02544 gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3822 YpsIP31758_3823 YpsIP31758_3823 YpsIP31758_3823 4305969 4306127 + hypothetical protein identified by glimmer%3B putative gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3823 YpsIP31758_3824 YpsIP31758_3824 YpsIP31758_3824 4306837 4307082 - type III secretion apparatus protein%2C YscI/HrpB identified by match to protein family HMM TIGR02497 gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3824 YpsIP31758_3825 YpsIP31758_3825 YpsIP31758_3825 4307186 4307434 - type III secretion system protein%2C SsaH family identified by similarity to GB:AAV69416.1%3B match to protein family HMM TIGR02498 gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3825 YpsIP31758_3826 YpsIP31758_3826 eprI eprI 4307431 4307646 - type III secretion apparatus needle protein identified by match to protein family HMM TIGR02105 gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3826 YpsIP31758_3827 YpsIP31758_3827 YpsIP31758_3827 4307656 4308363 - transcriptional regulator%2C AraC family identified by match to protein family HMM PF00165 gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3827 YpsIP31758_3828 YpsIP31758_3828 YpsIP31758_3828 4308470 4308691 - type III secretion system protein%2C YseE family identified by match to protein family HMM TIGR02501 gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3828 YpsIP31758_3829 YpsIP31758_3829 YpsIP31758_3829 4308710 4309924 - type III secretion apparatus protein%2C YscD/HrpQ family identified by match to protein family HMM TIGR02500 gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3829 YpsIP31758_3830 YpsIP31758_3830 YpsIP31758_3830 4309926 4311443 - type III secretion outer membrane pore%2C YscC/HrcC family identified by match to protein family HMM PF00263%3B match to protein family HMM PF03958%3B match to protein family HMM TIGR02516 gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3830 YpsIP31758_3831 YpsIP31758_3831 YpsIP31758_3831 4311448 4311570 - hypothetical protein identified by glimmer%3B putative gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3831 YpsIP31758_3832 YpsIP31758_3832 YpsIP31758_3832 4311670 4314489 + putative sensor histidine kinase/response regulator EsrA identified by similarity to GB:AAV69423.1%3B match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3832 YpsIP31758_3833 YpsIP31758_3833 YpsIP31758_3833 4314503 4315135 + putative DNA-binding response regulator EsrB identified by similarity to GB:AAX76904.1%3B match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3833 YpsIP31758_3834 YpsIP31758_3834 gltP gltP 4315330 4316646 - glutamate/aspartate symport protein identified by similarity to SP:P21345%3B match to protein family HMM PF00375 gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3834 YpsIP31758_3835 YpsIP31758_3835 acsA acsA 4317501 4319459 + acetate--CoA ligase identified by similarity to SP:P27550%3B match to protein family HMM PF00501%3B match to protein family HMM TIGR02188 gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3835 YpsIP31758_3836 YpsIP31758_3836 YpsIP31758_3836 4319516 4319827 + conserved hypothetical protein identified by similarity to GB:CAH19547.1%3B match to protein family HMM PF04341 gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3836 YpsIP31758_3837 YpsIP31758_3837 actP actP 4319824 4321479 + cation/acetate symporter ActP identified by similarity to SP:P32705%3B match to protein family HMM PF00474%3B match to protein family HMM TIGR00813%3B match to protein family HMM TIGR02711 gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3837 YpsIP31758_3838 YpsIP31758_3838 YpsIP31758_3838 4321548 4322630 - conserved hypothetical protein identified by similarity to GB:CAG76684.1 gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3838 YpsIP31758_3839 YpsIP31758_3839 YpsIP31758_3839 4323356 4323517 + hypothetical protein identified by glimmer%3B putative gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3839 YpsIP31758_3843 YpsIP31758_3843 purH purH 4329535 4331124 + bifunctional purine biosynthesis protein PurH identified by match to protein family HMM PF01808%3B match to protein family HMM PF02142%3B match to protein family HMM TIGR00355 gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3843 YpsIP31758_3844 YpsIP31758_3844 purD purD 4331184 4332470 + phosphoribosylamine--glycine ligase identified by match to protein family HMM PF01071%3B match to protein family HMM PF02655%3B match to protein family HMM PF02843%3B match to protein family HMM PF02844%3B match to protein family HMM TIGR00877 gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3844 YpsIP31758_3845 YpsIP31758_3845 YpsIP31758_3845 4332618 4333319 - putative lipoprotein identified by match to protein family HMM PF07356 gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3845 YpsIP31758_3846 YpsIP31758_3846 hupA hupA 4333321 4333596 - DNA-binding protein HU-alpha identified by similarity to SP:P0ACF0%3B match to protein family HMM PF00216 gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3846 YpsIP31758_3847 YpsIP31758_3847 YpsIP31758_3847 4333785 4334375 - conserved hypothetical protein identified by similarity to SP:P32680%3B match to protein family HMM PF04222 gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3847 YpsIP31758_3848 YpsIP31758_3848 nfi nfi 4334421 4335125 - endonuclease V identified by similarity to SP:P68739%3B match to protein family HMM PF04493 gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3848 YpsIP31758_3849 YpsIP31758_3849 hemE hemE 4335191 4336258 - uroporphyrinogen decarboxylase identified by match to protein family HMM PF01208%3B match to protein family HMM TIGR01464 gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3849 YpsIP31758_3850 YpsIP31758_3850 YpsIP31758_3850 4336377 4337162 - hypothetical protein identified by glimmer%3B putative gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3850 YpsIP31758_3851 YpsIP31758_3851 YpsIP31758_3851 4337255 4338037 - hydrolase%2C NUDIX family identified by match to protein family HMM PF00293 gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3851 YpsIP31758_3852 YpsIP31758_3852 rsd rsd 4338134 4338643 + regulator of sigma D identified by similarity to SP:P31690%3B match to protein family HMM PF04353 gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3852 YpsIP31758_3853 YpsIP31758_3853 thiC thiC 4339018 4341063 + thiamine biosynthesis protein ThiC identified by match to protein family HMM PF01964%3B match to protein family HMM TIGR00190 gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3853 YpsIP31758_3854 YpsIP31758_3854 thiE thiE 4341077 4341724 + thiamine-phosphate pyrophosphorylase identified by match to protein family HMM PF02581%3B match to protein family HMM TIGR00693 gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3854 YpsIP31758_3855 YpsIP31758_3855 thiF thiF 4341714 4342511 + adenylyltransferase ThiF identified by similarity to SP:P30138%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237 gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3855 YpsIP31758_3856 YpsIP31758_3856 thiG thiG 4342725 4343540 + thiazole biosynthesis protein ThiG identified by similarity to SP:P30139%3B match to protein family HMM PF05690 gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3856 YpsIP31758_3857 YpsIP31758_3857 thiH thiH 4343533 4344663 + thiazole biosynthesis protein ThiH identified by similarity to SP:P30140%3B match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR02351 gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3857 YpsIP31758_3858 YpsIP31758_3858 YpsIP31758_3858 4344991 4345500 - IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3858 YpsIP31758_3859 YpsIP31758_3859 rpoC rpoC 4345680 4349900 - DNA-directed RNA polymerase%2C beta' subunit identified by match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386 gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3859 YpsIP31758_3860 YpsIP31758_3860 rpoB rpoB 4350029 4354057 - DNA-directed RNA polymerase%2C beta subunit identified by match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04561%3B match to protein family HMM PF04563%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013 gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3860 YpsIP31758_3861 YpsIP31758_3861 rplL rplL 4354400 4354768 - ribosomal protein L7/L12 identified by match to protein family HMM PF00542%3B match to protein family HMM TIGR00855 gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3861 YpsIP31758_3862 YpsIP31758_3862 rplJ rplJ 4354835 4355332 - ribosomal protein L10 identified by match to protein family HMM PF00466 gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3862 YpsIP31758_3863 YpsIP31758_3863 rplA rplA 4355697 4356401 - ribosomal protein L1 identified by match to protein family HMM PF00687%3B match to protein family HMM TIGR01169 gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3863 YpsIP31758_3864 YpsIP31758_3864 rplK rplK 4356405 4356833 - ribosomal protein L11 identified by match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632 gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3864 YpsIP31758_3865 YpsIP31758_3865 nusG nusG 4357024 4357569 - transcription termination/antitermination factor NusG identified by similarity to SP:P16921%3B match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922 gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3865 YpsIP31758_3866 YpsIP31758_3866 secE secE 4357571 4357954 - preprotein translocase%2C SecE subunit identified by similarity to SP:P16920%3B match to protein family HMM PF00584%3B match to protein family HMM TIGR00964 gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3866 YpsIP31758_3867 YpsIP31758_3867 tuf2 tuf2 4358205 4359389 - translation elongation factor Tu identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485 gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3867 YpsIP31758_3868 YpsIP31758_3868 YpsIP31758_3868 4360378 4360923 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3868 YpsIP31758_3869 YpsIP31758_3869 YpsIP31758_3869 4361147 4361656 - IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3869 YpsIP31758_3870 YpsIP31758_3870 coaA coaA 4361844 4362794 + pantothenate kinase identified by match to protein family HMM PF00485%3B match to protein family HMM TIGR00554 gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3870 YpsIP31758_3871 YpsIP31758_3871 birA birA 4362829 4363788 - birA bifunctional protein identified by similarity to SP:P06709%3B match to protein family HMM PF02237%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00121%3B match to protein family HMM TIGR00122 gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3871 YpsIP31758_3872 YpsIP31758_3872 murB murB 4363785 4364822 - UDP-N-acetylenolpyruvoylglucosamine reductase identified by match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179 gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3872 YpsIP31758_3876 YpsIP31758_3876 YpsIP31758_3876 4371036 4371578 + conserved hypothetical protein identified by similarity to SP:P0A9X0 gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3876 YpsIP31758_3877 YpsIP31758_3877 aroE aroE 4371633 4372454 - shikimate 5-dehydrogenase identified by similarity to SP:P15770%3B match to protein family HMM PF01488%3B match to protein family HMM TIGR00507 gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3877 YpsIP31758_3878 YpsIP31758_3878 rimN rimN 4372463 4373035 - ribosomal modification protein RimN identified by similarity to SP:P45748%3B match to protein family HMM PF01300 gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3878 YpsIP31758_3879 YpsIP31758_3879 YpsIP31758_3879 4373037 4373576 - topoisomerase DNA binding C4 zinc finger domain protein identified by match to protein family HMM PF01396 gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3879 YpsIP31758_3880 YpsIP31758_3880 smg smg 4373617 4374090 - smg protein identified by match to protein family HMM PF04361 gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3880 YpsIP31758_3881 YpsIP31758_3881 dprA dprA 4374062 4375183 - DNA protecting protein DprA identified by similarity to SP:P43862%3B match to protein family HMM PF02481%3B match to protein family HMM TIGR00732 gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3881 YpsIP31758_3882 YpsIP31758_3882 def def 4375318 4375830 + peptide deformylase identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079 gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3882 YpsIP31758_3883 YpsIP31758_3883 fmt fmt 4375855 4376802 + methionyl-tRNA formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460 gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3883 YpsIP31758_3884 YpsIP31758_3884 rsmB rsmB 4376896 4378185 + ribosomal RNA small subunit methyltransferase B identified by match to protein family HMM PF01029%3B match to protein family HMM PF01189%3B match to protein family HMM TIGR00563 gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3884 YpsIP31758_3885 YpsIP31758_3885 trkA trkA 4378241 4379617 + Trk system potassium uptake protein TrkA identified by similarity to SP:P23868%3B match to protein family HMM PF02080%3B match to protein family HMM PF02254%3B match to protein family HMM PF03807 gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3885 YpsIP31758_3886 YpsIP31758_3886 mscL mscL 4379756 4380169 + large conductance mechanosensitive channel protein identified by similarity to SP:P0A742%3B match to protein family HMM PF01741%3B match to protein family HMM TIGR00220 gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3886 YpsIP31758_3887 YpsIP31758_3887 YpsIP31758_3887 4380279 4380479 - conserved hypothetical protein identified by similarity to GB:CAG76901.1%3B match to protein family HMM PF03889 gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3887 YpsIP31758_3888 YpsIP31758_3888 zntR zntR 4380567 4380992 - Zn(II)-responsive transcriptional regulator identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR02043 gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3888 YpsIP31758_3889 YpsIP31758_3889 rplQ rplQ 4381439 4381828 - ribosomal protein L17 identified by match to protein family HMM PF01196%3B match to protein family HMM TIGR00059 gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3889 YpsIP31758_3890 YpsIP31758_3890 rpoA rpoA 4381869 4382858 - DNA-directed RNA polymerase%2C alpha subunit identified by match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027 gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3890 YpsIP31758_3891 YpsIP31758_3891 rpsD rpsD 4382884 4383504 - ribosomal protein S4 identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017 gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3891 YpsIP31758_3892 YpsIP31758_3892 rpsK rpsK 4383535 4383924 - ribosomal protein S11 identified by match to protein family HMM PF00411 gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3892 YpsIP31758_3893 YpsIP31758_3893 rpsM rpsM 4383941 4384297 - ribosomal protein S13 identified by match to protein family HMM PF00416 gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3893 YpsIP31758_3894 YpsIP31758_3894 secY secY 4384595 4385926 - preprotein translocase%2C SecY subunit identified by similarity to SP:P03844%3B match to protein family HMM PF00344%3B match to protein family HMM TIGR00967 gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3894 YpsIP31758_3895 YpsIP31758_3895 rplO rplO 4385934 4386368 - ribosomal protein L15 identified by match to protein family HMM PF00256%3B match to protein family HMM PF01305%3B match to protein family HMM TIGR01071 gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3895 YpsIP31758_3896 YpsIP31758_3896 rpmD rpmD 4386372 4386551 - ribosomal protein L30 identified by match to protein family HMM PF00327%3B match to protein family HMM TIGR01308 gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3896 YpsIP31758_3897 YpsIP31758_3897 rpsE rpsE 4386554 4387057 - ribosomal protein S5 identified by match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021 gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3897 YpsIP31758_3898 YpsIP31758_3898 rplR rplR 4387072 4387425 - ribosomal protein L18 identified by match to protein family HMM PF00861%3B match to protein family HMM TIGR00060 gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3898 YpsIP31758_3899 YpsIP31758_3899 rplF rplF 4387435 4387968 - ribosomal protein L6 identified by match to protein family HMM PF00347 gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3899 YpsIP31758_3900 YpsIP31758_3900 rpsH rpsH 4387983 4388375 - ribosomal protein S8 identified by match to protein family HMM PF00410 gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3900 YpsIP31758_3901 YpsIP31758_3901 rpsN rpsN 4388409 4388714 - ribosomal protein S14 identified by similarity to SP:Q8ZJ99%3B match to protein family HMM PF00253 gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3901 YpsIP31758_3902 YpsIP31758_3902 rplE rplE 4388728 4389267 - ribosomal protein L5 identified by match to protein family HMM PF00281%3B match to protein family HMM PF00673 gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3902 YpsIP31758_3903 YpsIP31758_3903 rplX rplX 4389282 4389596 - ribosomal protein L24 identified by match to protein family HMM PF00467%3B match to protein family HMM TIGR01079 gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3903 YpsIP31758_3904 YpsIP31758_3904 rplN rplN 4389607 4389978 - ribosomal protein L14 identified by match to protein family HMM PF00238%3B match to protein family HMM TIGR01067 gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3904 YpsIP31758_3905 YpsIP31758_3905 YpsIP31758_3905 4390295 4390804 - IS1541%2C transposase identified by match to protein family HMM PF01797 gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3905 YpsIP31758_3906 YpsIP31758_3906 rpsQ rpsQ 4390858 4391124 - ribosomal protein s17 identified by match to protein family HMM PF00366 gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3906 YpsIP31758_3907 YpsIP31758_3907 rpmC rpmC 4391124 4391315 - ribosomal protein L29 identified by match to protein family HMM PF00831%3B match to protein family HMM TIGR00012 gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3907 YpsIP31758_3908 YpsIP31758_3908 rplP rplP 4391315 4391725 - ribosomal protein L16 identified by match to protein family HMM PF00252%3B match to protein family HMM TIGR01164 gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3908 YpsIP31758_3909 YpsIP31758_3909 rpsC rpsC 4391738 4392436 - ribosomal protein S3 identified by match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009 gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3909 YpsIP31758_3910 YpsIP31758_3910 rplV rplV 4392454 4392786 - ribosomal protein L22 identified by match to protein family HMM PF00237%3B match to protein family HMM TIGR01044 gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3910 YpsIP31758_3911 YpsIP31758_3911 rpsS rpsS 4392801 4393079 - ribosomal protein S19 identified by match to protein family HMM PF00203%3B match to protein family HMM TIGR01050 gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3911 YpsIP31758_3912 YpsIP31758_3912 rplB rplB 4393094 4393918 - ribosomal protein L2 identified by match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171 gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3912 YpsIP31758_3913 YpsIP31758_3913 rplW rplW 4393935 4394237 - ribosomal protein L23 identified by match to protein family HMM PF00276 gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3913 YpsIP31758_3914 YpsIP31758_3914 rplD rplD 4394234 4394839 - ribosomal protein L4 identified by match to protein family HMM PF00573 gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3914 YpsIP31758_3915 YpsIP31758_3915 rplC rplC 4394856 4395485 - ribosomal protein L3 identified by match to protein family HMM PF00297 gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3915 YpsIP31758_3916 YpsIP31758_3916 rpsJ rpsJ 4395518 4395829 - ribosomal protein S10 identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049 gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3916 YpsIP31758_3917 YpsIP31758_3917 bfr bfr 4396243 4396716 - bacterioferritin identified by match to protein family HMM PF00210%3B match to protein family HMM TIGR00754 gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3917 YpsIP31758_3918 YpsIP31758_3918 tuf1 tuf1 4397128 4398312 - translation elongation factor Tu identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485 gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3918 YpsIP31758_3919 YpsIP31758_3919 fusA fusA 4398384 4400492 - translation elongation factor G identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484 gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3919 YpsIP31758_3920 YpsIP31758_3920 rpsG rpsG 4400586 4401056 - ribosomal protein S7 identified by match to protein family HMM PF00177%3B match to protein family HMM TIGR01029 gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3920 YpsIP31758_3921 YpsIP31758_3921 rpsL rpsL 4401153 4401527 - ribosomal protein S12 identified by match to protein family HMM PF00164%3B match to protein family HMM TIGR00981 gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3921 YpsIP31758_3922 YpsIP31758_3922 tusB tusB 4401665 4401952 - tRNA 2-thiouridine synthesizing protein B identified by similarity to SP:P45530%3B match to protein family HMM PF04077%3B match to protein family HMM TIGR03011 gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3922 YpsIP31758_3923 YpsIP31758_3923 tusC tusC 4401972 4402337 - tRNA 2-thiouridine synthesizing protein C identified by similarity to SP:P45531%3B match to protein family HMM PF02635%3B match to protein family HMM TIGR03010 gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3923 YpsIP31758_3924 YpsIP31758_3924 tusD tusD 4402337 4402732 - tRNA 2-thiouridine synthesizing sulfurtransferase TusD identified by similarity to SP:P45532%3B match to protein family HMM PF02635%3B match to protein family HMM TIGR03012 gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3924 YpsIP31758_3925 YpsIP31758_3925 YpsIP31758_3925 4402732 4403454 - conserved hypothetical protein identified by similarity to GB:CAD08161.1 gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3925 YpsIP31758_3926 YpsIP31758_3926 YpsIP31758_3926 4403708 4404508 - peptidyl-prolyl cis-trans isomerase%2C FKBP-type identified by similarity to SP:P45523%3B match to protein family HMM PF00254%3B match to protein family HMM PF01346 gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3926 YpsIP31758_3927 YpsIP31758_3927 YpsIP31758_3927 4404823 4405041 + slyX protein identified by similarity to SP:P0A8R4%3B match to protein family HMM PF04102 gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3927 YpsIP31758_3928 YpsIP31758_3928 slyD slyD 4405242 4405841 - peptidyl-prolyl cis-trans isomerase SlyD identified by match to protein family HMM PF00254 gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3928 YpsIP31758_3929 YpsIP31758_3929 YpsIP31758_3929 4405936 4406157 - conserved hypothetical protein identified by match to protein family HMM TIGR02443 gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3929 YpsIP31758_3930 YpsIP31758_3930 kefB kefB 4406173 4407981 - glutathione-regulated potassium-efflux system protein KefB identified by similarity to SP:P45522%3B match to protein family HMM PF00999%3B match to protein family HMM PF02254%3B match to protein family HMM TIGR00932 gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3930 YpsIP31758_3931 YpsIP31758_3931 kefG kefG 4407985 4408533 - glutathione-regulated potassium-efflux system ancillary protein KefG identified by similarity to SP:P0A756%3B match to protein family HMM PF02525 gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3931 YpsIP31758_3932 YpsIP31758_3932 YpsIP31758_3932 4408784 4410706 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3932 YpsIP31758_3933 YpsIP31758_3933 YpsIP31758_3933 4410841 4411830 + glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3933 YpsIP31758_3934 YpsIP31758_3934 YpsIP31758_3934 4411923 4412903 + heptosyltransferase family protein identified by match to protein family HMM PF01075 gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3934 YpsIP31758_3935 YpsIP31758_3935 tauD tauD 4412916 4413764 - alpha-ketoglutarate-dependent taurine dioxygenase identified by similarity to SP:P37610%3B match to protein family HMM PF02668 gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3935 YpsIP31758_3936 YpsIP31758_3936 tauC tauC 4413761 4414615 - taurine ABC transporter%2C permease protein identified by similarity to SP:Q47539%3B match to protein family HMM PF00528 gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3936 YpsIP31758_3937 YpsIP31758_3937 tauB tauB 4414612 4415379 - taurine ABC transporter%2C ATP-binding protein identified by similarity to SP:Q47538%3B match to protein family HMM PF00005 gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3937 YpsIP31758_3938 YpsIP31758_3938 tauA tauA 4415388 4416431 - taurine ABC transporter%2C periplasmic taurine-binding protein identified by similarity to SP:Q47537%3B match to protein family HMM PF04069%3B match to protein family HMM TIGR01729 gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3938 YpsIP31758_3939 YpsIP31758_3939 YpsIP31758_3939 4416634 4417236 - translocator protein%2C LysE family identified by match to protein family HMM PF01810 gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3939 YpsIP31758_3940 YpsIP31758_3940 YpsIP31758_3940 4417338 4418318 + hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3940 YpsIP31758_3941 YpsIP31758_3941 YpsIP31758_3941 4418315 4418551 + conserved hypothetical protein identified by similarity to SP:P67627%3B match to protein family HMM PF06794 gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3941 YpsIP31758_3942 YpsIP31758_3942 YpsIP31758_3942 4418700 4419569 + putative phosphoribulokinase identified by similarity to SP:P37307%3B match to protein family HMM PF00485 gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3942 YpsIP31758_3943 YpsIP31758_3943 YpsIP31758_3943 4419747 4420145 - conserved hypothetical protein identified by similarity to GB:CAH22965.1%3B match to protein family HMM PF06836 gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3943 YpsIP31758_3944 YpsIP31758_3944 YpsIP31758_3944 4420250 4420657 - OsmC family protein identified by match to protein family HMM PF02566 gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3944 YpsIP31758_3945 YpsIP31758_3945 crp crp 4420994 4421626 + catabolite gene activator identified by similarity to SP:P0ACJ8%3B match to protein family HMM PF00027%3B match to protein family HMM PF00325 gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3945 YpsIP31758_3946 YpsIP31758_3946 YpsIP31758_3946 4421706 4423826 + integral membrane protein%2C YccS/YhfK family identified by match to protein family HMM PF05976%3B match to protein family HMM TIGR01667 gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3946 YpsIP31758_3947 YpsIP31758_3947 argD argD 4423871 4425088 - acetylornithine/succinyldiaminopimelate aminotransferase identified by similarity to SP:P18335%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00707%3B match to protein family HMM TIGR03246 gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3947 YpsIP31758_3948 YpsIP31758_3948 pabA pabA 4425221 4425796 - para-aminobenzoate synthase glutamine amidotransferase component II identified by similarity to SP:P00903%3B match to protein family HMM PF00117%3B match to protein family HMM TIGR00566 gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3948 YpsIP31758_3949 YpsIP31758_3949 YpsIP31758_3949 4426040 4427581 - conserved hypothetical protein identified by similarity to RF:YP_158049.1%3B match to protein family HMM PF05872 gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3949 YpsIP31758_3950 YpsIP31758_3950 ppiA ppiA 4427907 4428476 - peptidyl-prolyl cis-trans isomerase A identified by similarity to SP:P20752%3B match to protein family HMM PF00160 gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3950 YpsIP31758_3951 YpsIP31758_3951 celF celF 4429006 4430319 + 6-phospho-beta-glucosidase identified by similarity to SP:P46320%3B match to protein family HMM PF02056 gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3951 YpsIP31758_3952 YpsIP31758_3952 YpsIP31758_3952 4430589 4431575 + sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3952 YpsIP31758_3953 YpsIP31758_3953 oprC oprC 4431670 4433715 - TonB-dependent copper receptor OprC identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01778 gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3953 YpsIP31758_3954 YpsIP31758_3954 tsgA tsgA 4434201 4435385 + major facilitator family transporter TsgA identified by match to protein family HMM PF07690 gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3954 YpsIP31758_3955 YpsIP31758_3955 codA codA 4435470 4436780 - cytosine deaminase identified by similarity to SP:P25524%3B match to protein family HMM PF07969 gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3955 YpsIP31758_3956 YpsIP31758_3956 nirB nirB 4437090 4439636 + nitrite reductase [NAD(P)H]%2C large subunit identified by similarity to SP:P08201%3B match to protein family HMM PF00070%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM PF04324%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR02374 gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3956 YpsIP31758_3957 YpsIP31758_3957 nirD nirD 4439633 4439959 + nitrite reductase [NAD(P)H]%2C small subunit identified by match to protein family HMM TIGR02378 gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3957 YpsIP31758_3958 YpsIP31758_3958 fnt fnt 4440150 4440956 + formate/nitrite transporter identified by match to protein family HMM PF01226%3B match to protein family HMM TIGR00790 gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3958 YpsIP31758_3959 YpsIP31758_3959 cysG1 cysG1 4441019 4442440 + siroheme synthase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469%3B match to protein family HMM TIGR01470 gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3959 YpsIP31758_3960 YpsIP31758_3960 trpS trpS 4442559 4443599 - tryptophanyl-tRNA synthetase identified by similarity to SP:P00954%3B match to protein family HMM PF00579%3B match to protein family HMM TIGR00233 gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3960 YpsIP31758_3961 YpsIP31758_3961 gph2 gph2 4443601 4444299 - phosphoglycolate phosphatase%2C bacterial identified by similarity to SP:P32662%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01449%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3961 YpsIP31758_3962 YpsIP31758_3962 rpe rpe 4444292 4444969 - ribulose-phosphate 3-epimerase identified by similarity to SP:P32661%3B match to protein family HMM PF00834%3B match to protein family HMM TIGR01163 gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3962 YpsIP31758_3963 YpsIP31758_3963 dam dam 4445272 4446087 - DNA adenine methylase identified by similarity to SP:P0AEE8%3B match to protein family HMM PF02086%3B match to protein family HMM TIGR00571 gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3963 YpsIP31758_3964 YpsIP31758_3964 YpsIP31758_3964 4446171 4447160 - putative DamX protein identified by similarity to SP:P11557%3B match to protein family HMM PF05036 gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3964 YpsIP31758_3965 YpsIP31758_3965 aroB aroB 4447414 4448502 - 3-dehydroquinate synthase identified by similarity to SP:P07639%3B match to protein family HMM PF01761%3B match to protein family HMM TIGR01357 gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3965 YpsIP31758_3966 YpsIP31758_3966 aroK aroK 4448559 4449080 - shikimate kinase identified by similarity to SP:P0A6D7%3B match to protein family HMM PF01202 gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3966 YpsIP31758_3967 YpsIP31758_3967 hofQ hofQ 4449429 4450805 - protein transporter HofQ identified by similarity to SP:P34749%3B match to protein family HMM PF00263%3B match to protein family HMM PF03958%3B match to protein family HMM PF07660%3B match to protein family HMM TIGR02515 gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3967 YpsIP31758_3968 YpsIP31758_3968 YpsIP31758_3968 4451010 4451369 - conserved hypothetical protein identified by similarity to GB:AAS60428.1 gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3968 YpsIP31758_3969 YpsIP31758_3969 YpsIP31758_3969 4451389 4451970 - conserved hypothetical protein identified by similarity to GB:AAS60427.1 gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3969 YpsIP31758_3970 YpsIP31758_3970 YpsIP31758_3970 4451963 4452568 - fimbrial assembly protein PilN identified by match to protein family HMM PF05137 gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3970 YpsIP31758_3971 YpsIP31758_3971 YpsIP31758_3971 4452568 4453464 - conserved hypothetical protein identified by similarity to GB:CAE12389.1 gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3971 YpsIP31758_3972 YpsIP31758_3972 mrcA mrcA 4453584 4456139 + penicillin-binding protein 1A identified by similarity to SP:P02918%3B match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02074 gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3972 YpsIP31758_3973 YpsIP31758_3973 nudE nudE 4456276 4456821 - ADP compounds hydrolase nudE identified by similarity to SP:P45799%3B match to protein family HMM PF00293 gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3973 YpsIP31758_3974 YpsIP31758_3974 YpsIP31758_3974 4457408 4459555 + Intracellular growth attenuator family protein identified by match to protein family HMM PF07095 gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3974 YpsIP31758_3975 YpsIP31758_3975 YpsIP31758_3975 4459699 4460379 + HAD hydrolase%2C IA family identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3975 YpsIP31758_3976 YpsIP31758_3976 hslR hslR 4460408 4460815 + heat shock protein 15 identified by similarity to SP:P0ACG8%3B match to protein family HMM PF01479 gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3976 YpsIP31758_3977 YpsIP31758_3977 hslO hslO 4460978 4461859 + chaperonin HslO identified by similarity to SP:P0A6Y5%3B match to protein family HMM PF01430 gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3977 YpsIP31758_3978 YpsIP31758_3978 pckA pckA 4462056 4463675 + phosphoenolpyruvate carboxykinase (ATP) identified by match to protein family HMM PF01293%3B match to protein family HMM TIGR00224 gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3978 YpsIP31758_3979 YpsIP31758_3979 envZ envZ 4463911 4465263 - osmolarity sensor protein EnvZ identified by similarity to SP:P02933%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3979 YpsIP31758_3980 YpsIP31758_3980 ompR ompR 4465260 4465979 - transcriptional regulatory protein OmpR identified by similarity to SP:P0AA16%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3980 YpsIP31758_3981 YpsIP31758_3981 greB greB 4466115 4466630 - transcription elongation factor GreB identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01461 gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3981 YpsIP31758_3982 YpsIP31758_3982 YpsIP31758_3982 4467164 4469539 + conserved hypothetical protein identified by similarity to SP:P46837%3B match to protein family HMM PF00575 gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3982 YpsIP31758_3983 YpsIP31758_3983 YpsIP31758_3983 4469921 4470067 - hypothetical protein identified by glimmer%3B putative gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3983 YpsIP31758_3984 YpsIP31758_3984 feoA feoA 4470062 4470289 + ferrous iron transport protein A identified by similarity to SP:P33649%3B match to protein family HMM PF04023 gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3984 YpsIP31758_3985 YpsIP31758_3985 feoB feoB 4470381 4472696 + ferrous iron transport protein B identified by similarity to SP:P33650%3B match to protein family HMM PF01926%3B match to protein family HMM PF02421%3B match to protein family HMM PF07664%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00437 gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3985 YpsIP31758_3986 YpsIP31758_3986 YpsIP31758_3986 4472732 4472989 + conserved hypothetical protein identified by similarity to GB:BAC53663.1 gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3986 YpsIP31758_3987 YpsIP31758_3987 YpsIP31758_3987 4473127 4473396 - conserved hypothetical protein identified by similarity to SP:P64614%3B match to protein family HMM PF07338 gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3987 YpsIP31758_3988 YpsIP31758_3988 bioH bioH 4473566 4474342 - carboxylesterase bioH identified by similarity to SP:P13001%3B match to protein family HMM PF00561%3B match to protein family HMM TIGR01738 gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3988 YpsIP31758_3989 YpsIP31758_3989 YpsIP31758_3989 4474429 4475130 + protein GntX identified by similarity to SP:Q8FCT3 gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3989 YpsIP31758_3990 YpsIP31758_3990 YpsIP31758_3990 4475190 4475765 + hesB-like domain/nifU-like domain protein identified by match to protein family HMM PF01106%3B match to protein family HMM PF01521 gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3990 YpsIP31758_3991 YpsIP31758_3991 YpsIP31758_3991 4475777 4475974 + hypothetical protein identified by glimmer%3B putative gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3991 YpsIP31758_3992 YpsIP31758_3992 malQ malQ 4476086 4478182 - 4-alpha-glucanotransferase identified by similarity to SP:P15977%3B match to protein family HMM PF02446%3B match to protein family HMM TIGR00217 gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3992 YpsIP31758_3993 YpsIP31758_3993 malP malP 4478195 4480600 - maltodextrin phosphorylase identified by similarity to SP:P00490%3B match to protein family HMM PF00343%3B match to protein family HMM TIGR02093 gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3993 YpsIP31758_3994 YpsIP31758_3994 malT malT 4480918 4483629 + transcriptional regulator MalT identified by similarity to SP:P06993%3B match to protein family HMM PF00196 gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3994 YpsIP31758_3995 YpsIP31758_3995 glpE glpE 4484003 4484332 + thiosulfate sulfurtransferase GlpE identified by similarity to SP:P0A6V5%3B match to protein family HMM PF00581 gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3995 YpsIP31758_3996 YpsIP31758_3996 YpsIP31758_3996 4484350 4485186 + peptidase%2C S54 (rhomboid) family protein identified by match to protein family HMM PF01694 gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3996 YpsIP31758_3997 YpsIP31758_3997 glpR glpR 4485221 4485979 + glycerol-3-phosphate regulon repressor identified by similarity to SP:P0ACL0%3B match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3997 YpsIP31758_3998 YpsIP31758_3998 YpsIP31758_3998 4486617 4487018 - conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAV78349.1 pseudogene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3998 YpsIP31758_3999 YpsIP31758_3999 YpsIP31758_3999 4487188 4487652 - putative enterobacterial membrane protein identified by match to protein family HMM PF06092 gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_3999 YpsIP31758_4000 YpsIP31758_4000 glpD glpD 4488734 4490248 + aerobic glycerol-3-phosphate dehydrogenase identified by similarity to SP:P13035%3B match to protein family HMM PF01266 gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4000 YpsIP31758_4001 YpsIP31758_4001 YpsIP31758_4001 4490278 4490400 - hypothetical protein identified by glimmer%3B putative gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4001 YpsIP31758_4002 YpsIP31758_4002 glgP glgP 4490410 4492857 - glycogen phosphorylase identified by similarity to SP:P0AC87%3B match to protein family HMM PF00343%3B match to protein family HMM TIGR02093 gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4002 YpsIP31758_4003 YpsIP31758_4003 glgA glgA 4493027 4494457 - glycogen synthase identified by similarity to SP:P0A6U8%3B match to protein family HMM PF00534%3B match to protein family HMM TIGR02095 gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4003 YpsIP31758_4004 YpsIP31758_4004 glgC glgC 4494668 4495954 - glucose-1-phosphate adenylyltransferase identified by similarity to SP:P0A6V1%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR02091 gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4004 YpsIP31758_4005 YpsIP31758_4005 glgX glgX 4495964 4497952 - glycogen debranching enzyme GlgX identified by similarity to SP:P15067%3B match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02100 gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4005 YpsIP31758_4006 YpsIP31758_4006 glgB glgB 4497954 4500137 - 1%2C4-alpha-glucan branching enzyme identified by similarity to SP:P07762%3B match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR01515 gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4006 YpsIP31758_4007 YpsIP31758_4007 YpsIP31758_4007 4500644 4502341 + sensor histidine kinase identified by match to protein family HMM PF02518%3B match to protein family HMM PF06580%3B match to protein family HMM PF07694 gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4007 YpsIP31758_4008 YpsIP31758_4008 YpsIP31758_4008 4502514 4517375 - putative invasin identified by similarity to SP:P11922%3B match to protein family HMM PF01476%3B match to protein family HMM PF02369%3B match to protein family HMM TIGR01451 gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4008 YpsIP31758_4009 YpsIP31758_4009 YpsIP31758_4009 4519053 4519196 - conserved hypothetical protein%2C authentic frameshift%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to GB:AAT94176.1 pseudogene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4009 YpsIP31758_4010 YpsIP31758_4010 YpsIP31758_4010 4519354 4519641 - conserved hypothetical protein identified by similarity to GB:AAX46805.1 gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4010 YpsIP31758_4011 YpsIP31758_4011 YpsIP31758_4011 4519648 4519956 - conserved domain protein identified by similarity to GB:ABB41561.1 gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4011 YpsIP31758_4012 YpsIP31758_4012 YpsIP31758_4012 4519967 4520791 - conserved hypothetical protein identified by similarity to GB:AAO17190.1 gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4012 YpsIP31758_4013 YpsIP31758_4013 asd asd 4521208 4522311 - aspartate-semialdehyde dehydrogenase identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01745 gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4013 YpsIP31758_4014 YpsIP31758_4014 YpsIP31758_4014 4522327 4522464 + hypothetical protein identified by glimmer%3B putative gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4014 YpsIP31758_4015 YpsIP31758_4015 YpsIP31758_4015 4522679 4523263 + membrane protein%2C MarC family identified by match to protein family HMM PF01914 gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4015 YpsIP31758_4016 YpsIP31758_4016 YpsIP31758_4016 4523448 4523837 - conserved domain protein identified by similarity to GB:AAN68710.1 gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4016 YpsIP31758_4017 YpsIP31758_4017 YpsIP31758_4017 4523943 4524335 - conserved hypothetical protein identified by similarity to GB:AAZ37889.1 gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4017 YpsIP31758_4018 YpsIP31758_4018 YpsIP31758_4018 4524442 4524831 - conserved hypothetical protein identified by similarity to GB:AAZ37889.1 gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4018 YpsIP31758_4019 YpsIP31758_4019 YpsIP31758_4019 4524828 4526078 - conserved domain protein gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4019 YpsIP31758_4020 YpsIP31758_4020 gntK gntK 4526418 4526921 - thermoresistant gluconokinase identified by similarity to SP:P46859%3B match to protein family HMM PF01202%3B match to protein family HMM TIGR01313 gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4020 YpsIP31758_4021 YpsIP31758_4021 gntT gntT 4527138 4528454 + high-affinity gluconate transporter GntT identified by similarity to SP:P39835%3B match to protein family HMM PF02447%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00791 gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4021 YpsIP31758_4022 YpsIP31758_4022 YpsIP31758_4022 4528516 4529511 - sugar-binding transcriptional regulator%2C LacI family identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4022 YpsIP31758_4023 YpsIP31758_4023 YpsIP31758_4023 4529640 4530335 - YhhW family protein identified by match to protein family HMM PF02678%3B match to protein family HMM PF07883 gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4023 YpsIP31758_4024 YpsIP31758_4024 YpsIP31758_4024 4531100 4531837 + DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4024 YpsIP31758_4025 YpsIP31758_4025 YpsIP31758_4025 4531912 4532919 - kinase%2C pfkB family identified by match to protein family HMM PF00294 gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4025 YpsIP31758_4026 YpsIP31758_4026 YpsIP31758_4026 4532929 4533789 - putative fructose-bisphosphate aldolase identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167 gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4026 YpsIP31758_4027 YpsIP31758_4027 YpsIP31758_4027 4533815 4534498 - conserved hypothetical protein identified by match to protein family HMM PF07385 gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4027 YpsIP31758_4028 YpsIP31758_4028 rbsB6 rbsB6 4534573 4535517 - ribose ABC transporter%2C periplasmic ribose-binding protein identified by similarity to SP:P36949%3B match to protein family HMM PF00532 gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4028 YpsIP31758_4029 YpsIP31758_4029 rbsC7 rbsC7 4535548 4536540 - ribose ABC transporter%2C permease protein identified by similarity to SP:P36948%3B match to protein family HMM PF02653 gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4029 YpsIP31758_4030 YpsIP31758_4030 rbsA6 rbsA6 4536533 4538056 - ribose ABC transporter%2C ATP-binding protein identified by similarity to SP:P36947%3B match to protein family HMM PF00005 gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4030 YpsIP31758_4031 YpsIP31758_4031 YpsIP31758_4031 4538245 4540800 + sensory box histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4031 YpsIP31758_4032 YpsIP31758_4032 YpsIP31758_4032 4540936 4542132 - conserved hypothetical protein TIGR00275 identified by match to protein family HMM PF01266%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00275 gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4032 YpsIP31758_4033 YpsIP31758_4033 pitA pitA 4542443 4543939 + low-affinity inorganic phosphate transporter identified by similarity to SP:P37308%3B match to protein family HMM PF01384 gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4033 YpsIP31758_4034 YpsIP31758_4034 uspB uspB 4544086 4544421 - universal stress protein B identified by similarity to SP:P0A8S5 gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4034 YpsIP31758_4035 YpsIP31758_4035 YpsIP31758_4035 4545129 4545575 + universal stress protein A identified by match to protein family HMM PF00582 gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4035 YpsIP31758_4036 YpsIP31758_4036 gdhA gdhA 4545822 4547165 + NADP-specific glutamate dehydrogenase identified by similarity to SP:P15111%3B match to protein family HMM PF00208%3B match to protein family HMM PF02812 gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4036 YpsIP31758_4037 YpsIP31758_4037 YpsIP31758_4037 4547415 4548743 + metalloprotease identified by similarity to SP:P23694%3B match to protein family HMM PF00353%3B match to protein family HMM PF00413 gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4037 YpsIP31758_4038 YpsIP31758_4038 YpsIP31758_4038 4548808 4549578 - conserved hypothetical protein identified by match to protein family HMM PF04445 gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4038 YpsIP31758_4039 YpsIP31758_4039 YpsIP31758_4039 4549600 4549776 + hypothetical protein identified by glimmer%3B putative gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4039 YpsIP31758_4040 YpsIP31758_4040 YpsIP31758_4040 4549792 4550812 - IS630 family transposase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to RF:YP_309178.1 pseudogene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4040 YpsIP31758_4041 YpsIP31758_4041 YpsIP31758_4041 4551615 4551791 + hypothetical protein identified by glimmer%3B putative gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4041 YpsIP31758_4042 YpsIP31758_4042 YpsIP31758_4042 4551894 4552370 - putative enterobacterial membrane protein gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4042 YpsIP31758_4043 YpsIP31758_4043 YpsIP31758_4043 4552372 4553220 - conserved hypothetical protein identified by similarity to GB:AAN83172.1%3B match to protein family HMM TIGR03034 gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4043 YpsIP31758_4044 YpsIP31758_4044 YpsIP31758_4044 4553463 4553798 - IS3 family transposase%2C orfB identified by similarity to RF:NP_719796.1 gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4044 YpsIP31758_4045 YpsIP31758_4045 YpsIP31758_4045 4553746 4554020 - IS3 family transposase%2C orfA%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to RF:ZP_00818874.1 pseudogene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4045 YpsIP31758_4046 YpsIP31758_4046 YpsIP31758_4046 4554086 4554655 - hypothetical protein identified by glimmer%3B putative gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4046 YpsIP31758_4047 YpsIP31758_4047 prlC prlC 4555074 4557122 - oligopeptidase A identified by similarity to SP:P27298%3B match to protein family HMM PF01432 gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4047 YpsIP31758_4048 YpsIP31758_4048 YpsIP31758_4048 4557451 4558293 + conserved hypothetical protein identified by similarity to RF:ZP_00793643.1%3B match to protein family HMM PF04378 gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4048 YpsIP31758_4049 YpsIP31758_4049 gor gor 4558461 4559813 + glutathione-disulfide reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01421 gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4049 YpsIP31758_4050 YpsIP31758_4050 YpsIP31758_4050 4560084 4561211 + putative carbohydrate diacid regulator identified by similarity to SP:P37047%3B match to protein family HMM PF05651 gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4050 YpsIP31758_4051 YpsIP31758_4051 YpsIP31758_4051 4561389 4562657 + transporter%2C gluconate:H+ symporter (GntP) family identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600 gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4051 YpsIP31758_4052 YpsIP31758_4052 YpsIP31758_4052 4562668 4563804 + glycerate kinase identified by match to protein family HMM PF02595%3B match to protein family HMM TIGR00045 gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4052 YpsIP31758_4053 YpsIP31758_4053 YpsIP31758_4053 4564050 4564547 - conserved hypothetical protein identified by similarity to GB:AAN83171.1%3B match to protein family HMM PF06092 gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4053 YpsIP31758_4054 YpsIP31758_4054 YpsIP31758_4054 4564549 4565418 - conserved hypothetical protein identified by match to protein family HMM TIGR03034 gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4054 YpsIP31758_4055 YpsIP31758_4055 YpsIP31758_4055 4565506 4568709 - putative autotransporter protein identified by match to protein family HMM PF03212%3B match to protein family HMM PF03797%3B match to protein family HMM TIGR01414 gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4055 YpsIP31758_4056 YpsIP31758_4056 YpsIP31758_4056 4569317 4570402 + ribonuclease BN-like family protein identified by match to protein family HMM PF03631%3B match to protein family HMM TIGR00766 gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4056 YpsIP31758_4057 YpsIP31758_4057 YpsIP31758_4057 4570406 4571203 + putative CDP-diacylglycerol pyrophosphatase identified by match to protein family HMM PF02611 gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4057 YpsIP31758_4058 YpsIP31758_4058 YpsIP31758_4058 4571208 4573445 - AsmA family protein identified by match to protein family HMM PF05170 gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4058 YpsIP31758_4059 YpsIP31758_4059 YpsIP31758_4059 4573750 4574577 - cyclic diguanylate phosphodiesterase (EAL) domain protein identified by match to protein family HMM PF00563 gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4059 YpsIP31758_4060 YpsIP31758_4060 dmpI dmpI 4574795 4574995 + 4-oxalocrotonate tautomerase family enzyme identified by match to protein family HMM PF01361%3B match to protein family HMM TIGR00013 gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4060 YpsIP31758_4061 YpsIP31758_4061 YpsIP31758_4061 4575003 4575110 + hypothetical protein identified by glimmer%3B putative gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4061 YpsIP31758_4062 YpsIP31758_4062 kdgK kdgK 4575274 4576218 + 2-dehydro-3-deoxygluconokinase identified by similarity to SP:P45416%3B match to protein family HMM PF00294 gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4062 YpsIP31758_4063 YpsIP31758_4063 YpsIP31758_4063 4576382 4577881 - peptidase%2C M16 family identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4063 YpsIP31758_4064 YpsIP31758_4064 dctA dctA 4578246 4579535 - aerobic C4-dicarboxylate transport protein identified by similarity to SP:P0A830%3B match to protein family HMM PF00375 gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4064 YpsIP31758_4065 YpsIP31758_4065 YpsIP31758_4065 4580007 4580486 - F5/8 type C domain protein identified by match to protein family HMM PF00754 gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4065 YpsIP31758_4066 YpsIP31758_4066 YpsIP31758_4066 4580611 4582329 - periplasmic pectate lyase identified by match to protein family HMM PF06917 gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4066 YpsIP31758_4067 YpsIP31758_4067 YpsIP31758_4067 4582367 4582489 + hypothetical protein identified by glimmer%3B putative gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4067 YpsIP31758_4068 YpsIP31758_4068 kdgM1 kdgM1 4582575 4583279 - oligogalacturonate-specific porin protein KdgM identified by similarity to SP:Q934G3%3B match to protein family HMM PF06178%3B match to protein family HMM TIGR03304 gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4068 YpsIP31758_4069 YpsIP31758_4069 YpsIP31758_4069 4583920 4585935 - putative diguanylate cyclase/cyclic diguanylate phosphodiesterase identified by match to protein family HMM PF00563%3B match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4069 YpsIP31758_4070 YpsIP31758_4070 bcsZ bcsZ 4586251 4587366 - endoglucanase identified by similarity to SP:P37651%3B match to protein family HMM PF01270 gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4070 YpsIP31758_4071 YpsIP31758_4071 dppF dppF 4587484 4588560 - dipeptide ABC transporter%2C ATP-binding protein DppF identified by similarity to SP:P37313%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4071 YpsIP31758_4072 YpsIP31758_4072 dppD dppD 4588557 4589537 - dipeptide ABC transporter%2C ATP-binding protein DppD identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4072 YpsIP31758_4073 YpsIP31758_4073 dppC dppC 4589551 4590453 - dipeptide ABC transporter%2C permease protein DppC identified by similarity to SP:P0AEG1%3B match to protein family HMM PF00528 gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4073 YpsIP31758_4074 YpsIP31758_4074 dppB dppB 4590464 4591483 - dipeptide ABC transporter%2C permease protein DppB identified by similarity to SP:P0AEF8%3B match to protein family HMM PF00528 gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4074 YpsIP31758_4075 YpsIP31758_4075 dppA dppA 4591766 4593373 - dipeptide ABC transporter%2C periplasmic dipeptide-binding protein identified by similarity to SP:P23847%3B match to protein family HMM PF00496 gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4075 YpsIP31758_4076 YpsIP31758_4076 YpsIP31758_4076 4594042 4595712 - haemolysin secretion/activation protein%2C ShlB/FhaC/HecB family identified by match to protein family HMM PF03865 gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4076 YpsIP31758_4077 YpsIP31758_4077 YpsIP31758_4077 4595913 4597304 - putative hemagglutinin/hemolysin identified by match to protein family HMM PF05594%3B match to protein family HMM PF05860%3B match to protein family HMM TIGR01731%3B match to protein family HMM TIGR01901 gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4077 YpsIP31758_4078 YpsIP31758_4078 uhpC uhpC 4597810 4599141 - regulatory protein UhpC identified by similarity to SP:P09836%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00881 gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4078 YpsIP31758_4079 YpsIP31758_4079 uhpB uhpB 4599236 4600765 - sensor histidine kinase UhpB identified by similarity to SP:P09835%3B match to protein family HMM PF02518%3B match to protein family HMM PF05231%3B match to protein family HMM PF07730 gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4079 YpsIP31758_4080 YpsIP31758_4080 uhpA uhpA 4600762 4601352 - transcriptional regulatory protein UhpA identified by similarity to SP:P0AGA6%3B match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4080 YpsIP31758_4081 YpsIP31758_4081 eptB eptB 4601468 4603159 - phosphoethanolamine transferase identified by similarity to SP:P37661%3B match to protein family HMM PF00884 gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4081 YpsIP31758_4082 YpsIP31758_4082 YpsIP31758_4082 4603688 4605151 - conserved hypothetical protein identified by similarity to GB:AAY92303.1 gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4082 YpsIP31758_4083 YpsIP31758_4083 YpsIP31758_4083 4605363 4605563 + hypothetical protein identified by glimmer%3B putative gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4083 YpsIP31758_4084 YpsIP31758_4084 YpsIP31758_4084 4605619 4607022 - Amino acid permease family protein identified by match to protein family HMM PF00324 gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4084 YpsIP31758_4085 YpsIP31758_4085 hutH hutH 4607354 4608886 - histidine ammonia-lyase identified by similarity to SP:P21310%3B match to protein family HMM PF00221%3B match to protein family HMM TIGR01225 gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4085 YpsIP31758_4086 YpsIP31758_4086 hutU hutU 4608883 4610574 - urocanate hydratase identified by match to protein family HMM PF01175%3B match to protein family HMM TIGR01228 gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4086 YpsIP31758_4087 YpsIP31758_4087 YpsIP31758_4087 4611301 4612245 + pyridoxal-phosphate dependent protein identified by match to protein family HMM PF00291 gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4087 YpsIP31758_4088 YpsIP31758_4088 YpsIP31758_4088 4612242 4612808 + putative phosphoribosyl transferase protein identified by match to protein family HMM PF00156 gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4088 YpsIP31758_4089 YpsIP31758_4089 YpsIP31758_4089 4612891 4613820 + putative membrane protein gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4089 YpsIP31758_4090 YpsIP31758_4090 YpsIP31758_4090 4613822 4615066 + phosphoribosylglycinamide synthetase family protein identified by match to protein family HMM PF01071 gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4090 YpsIP31758_4091 YpsIP31758_4091 YpsIP31758_4091 4615589 4616542 + iron chelate ABC transporter%2C periplasmic iron-binding protein identified by match to protein family HMM PF01497 gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4091 YpsIP31758_4092 YpsIP31758_4092 YpsIP31758_4092 4616552 4617511 + iron chelate ABC transporter%2C permease protein identified by match to protein family HMM PF01032 gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4092 YpsIP31758_4093 YpsIP31758_4093 YpsIP31758_4093 4617501 4618508 + iron chelate ABC transporter%2C permease protein identified by match to protein family HMM PF01032 gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4093 YpsIP31758_4094 YpsIP31758_4094 YpsIP31758_4094 4619260 4620030 - conserved hypothetical protein identified by similarity to RF:NP_927507.1 gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4094 YpsIP31758_4095 YpsIP31758_4095 YpsIP31758_4095 4618505 4619263 + iron chelate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4095 YpsIP31758_4096 YpsIP31758_4096 YpsIP31758_4096 4620075 4620455 - conserved hypothetical protein identified by similarity to GB:CAE55812.1 gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4096 YpsIP31758_4097 YpsIP31758_4097 YpsIP31758_4097 4620690 4620962 - site-specific recombinase%2C phage integrase family%2C truncation gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4097 YpsIP31758_4098 YpsIP31758_4098 xylR xylR 4621348 4622541 - xylose operon regulatory protein identified by similarity to SP:P0ACI3%3B match to protein family HMM PF00165 gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4098 YpsIP31758_4099 YpsIP31758_4099 YpsIP31758_4099 4622631 4623815 - putative xylose transport system permease protein XylH identified by match to protein family HMM PF02653 gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4099 YpsIP31758_4100 YpsIP31758_4100 xylG xylG 4623802 4625334 - D-xylose transport ATP-binding protein xylG identified by similarity to SP:P37388%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02633 gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4100 YpsIP31758_4101 YpsIP31758_4101 xylF xylF 4625542 4626537 - D-xylose-binding periplasmic protein identified by similarity to SP:P37387%3B match to protein family HMM PF00532%3B match to protein family HMM TIGR02634 gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4101 YpsIP31758_4102 YpsIP31758_4102 xylA xylA 4627000 4628319 + xylose isomerase identified by similarity to SP:P00944%3B match to protein family HMM PF01261%3B match to protein family HMM TIGR02630 gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4102 YpsIP31758_4103 YpsIP31758_4103 xylB xylB 4628443 4629897 + xylulokinase identified by similarity to SP:P09099%3B match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01312 gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4103 YpsIP31758_4104 YpsIP31758_4104 YpsIP31758_4104 4629977 4630963 - hypothetical protein identified by glimmer%3B putative gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4104 YpsIP31758_4105 YpsIP31758_4105 YpsIP31758_4105 4631002 4631751 - pili assembly chaperone protein identified by match to protein family HMM PF00345%3B match to protein family HMM PF02753 gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4105 YpsIP31758_4106 YpsIP31758_4106 YpsIP31758_4106 4631862 4634354 - fimbrial usher protein identified by match to protein family HMM PF00577 gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4106 YpsIP31758_4107 YpsIP31758_4107 YpsIP31758_4107 4634430 4634987 - fimbrial protein identified by match to protein family HMM PF00419 gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4107 YpsIP31758_4108 YpsIP31758_4108 YpsIP31758_4108 4635855 4636847 - putative acyltransferase identified by match to protein family HMM PF01757 gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4108 YpsIP31758_4109 YpsIP31758_4109 YpsIP31758_4109 4635742 4635858 + hypothetical protein identified by glimmer%3B putative gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4109 YpsIP31758_4110 YpsIP31758_4110 mdfA mdfA 4637831 4639060 + multidrug translocase MdfA identified by similarity to SP:P0AEY8%3B match to protein family HMM PF07690 gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4110 YpsIP31758_4111 YpsIP31758_4111 YpsIP31758_4111 4639533 4640351 + conserved hypothetical protein identified by similarity to GB:CAG73979.1 gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4111 YpsIP31758_4112 YpsIP31758_4112 YpsIP31758_4112 4640365 4640697 - hypothetical protein identified by glimmer%3B putative gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4112 YpsIP31758_4113 YpsIP31758_4113 Tn3 family transposase Tn3 family transposase 4640986 4641450 + pseudogene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4113 YpsIP31758_4114 YpsIP31758_4114 selB selB 4641457 4643430 - selenocysteine-specific translation elongation factor identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00475 gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4114 YpsIP31758_4115 YpsIP31758_4115 selA selA 4643427 4644815 - L-seryl-tRNA selenium transferase identified by match to protein family HMM PF03841%3B match to protein family HMM TIGR00474 gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4115 YpsIP31758_4116 YpsIP31758_4116 fdhE fdhE 4645011 4645940 - formate dehydrogenase accessory protein FdhE identified by match to protein family HMM PF04216%3B match to protein family HMM TIGR01562 gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4116 YpsIP31758_4117 YpsIP31758_4117 fdoI fdoI 4645940 4646614 - aerobic formate dehydrogenase%2C cytochrome b556 subunit identified by similarity to SP:P32174%3B match to protein family HMM PF01292%3B match to protein family HMM TIGR01583 gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4117 YpsIP31758_4118 YpsIP31758_4118 YpsIP31758_4118 4646611 4647582 - putative aerobic formate dehydrogenase%2C iron-sulfur subunit identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR01582 gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4118 YpsIP31758_4119 YpsIP31758_4119 fdoG fdoG 4647595 4650642 - aerobic formate dehydrogenase%2C alpha subunit%2C proteobacterial-type Selenoprotein. identified by similarity to SP:P32176%3B match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01409%3B match to protein family HMM TIGR01553 gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4119 YpsIP31758_4120 YpsIP31758_4120 YpsIP31758_4120 4650839 4651663 + aerobic formate dehydrogenase accessory protein identified by match to protein family HMM PF02634%3B match to protein family HMM TIGR00129 gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4120 YpsIP31758_4121 YpsIP31758_4121 sodA sodA 4652098 4652721 + superoxide dismutase (Mn) identified by similarity to SP:P00448%3B match to protein family HMM PF00081%3B match to protein family HMM PF02777 gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4121 YpsIP31758_4122 YpsIP31758_4122 YpsIP31758_4122 4653065 4655014 + methyl-accepting chemotaxis protein identified by similarity to SP:P07017%3B match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4122 YpsIP31758_4123 YpsIP31758_4123 YpsIP31758_4123 4655152 4655535 + conserved hypothetical protein identified by similarity to GB:AAY91326.1 gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4123 YpsIP31758_4124 YpsIP31758_4124 YpsIP31758_4124 4656067 4656543 + conserved hypothetical protein identified by similarity to GB:CAC93518.1 gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4124 YpsIP31758_4125 YpsIP31758_4125 YpsIP31758_4125 4656712 4657068 - conserved hypothetical protein identified by similarity to GB:CAG73010.1 gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4125 YpsIP31758_4126 YpsIP31758_4126 mtlR mtlR 4657317 4657871 - mannitol operon repressor identified by similarity to SP:P36563%3B match to protein family HMM PF05068 gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4126 YpsIP31758_4127 YpsIP31758_4127 mtlD mtlD 4658078 4659241 - mannitol-1-phosphate 5-dehydrogenase identified by similarity to SP:P09424%3B match to protein family HMM PF01232%3B match to protein family HMM PF08125 gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4127 YpsIP31758_4128 YpsIP31758_4128 mtlA mtlA 4659378 4661309 - PTS system%2C mannitol-specific EIICBA component identified by similarity to SP:P00550%3B match to protein family HMM PF00359%3B match to protein family HMM PF02302%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00851 gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4128 YpsIP31758_4129 YpsIP31758_4129 YpsIP31758_4129 4661791 4662510 - putative lipoprotein identified by similarity to SP:P0ADK3 gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4129 YpsIP31758_4130 YpsIP31758_4130 glyS glyS 4662982 4665051 - glycyl-tRNA synthetase%2C beta subunit identified by similarity to SP:P00961%3B match to protein family HMM PF02092%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00211 gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4130 YpsIP31758_4131 YpsIP31758_4131 glyQ glyQ 4665061 4665975 - glycyl-tRNA synthetase%2C alpha subunit identified by similarity to SP:P00960%3B match to protein family HMM PF02091%3B match to protein family HMM TIGR00388 gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4131 YpsIP31758_4132 YpsIP31758_4132 tag tag 4666304 4666876 + DNA-3-methyladenine glycosylase I identified by similarity to SP:P05100%3B match to protein family HMM PF03352%3B match to protein family HMM TIGR00624 gene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4132 YpsIP31758_4133 YpsIP31758_4133 YpsIP31758_4133 4666873 4667328 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4133 YpsIP31758_4134 YpsIP31758_4134 YpsIP31758_4134 4667410 4667532 + hypothetical protein identified by glimmer%3B putative gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4134 YpsIP31758_4135 YpsIP31758_4135 YpsIP31758_4135 4667688 4668347 + OmpA family protein identified by match to protein family HMM PF00691%3B match to protein family HMM PF05433 gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4135 YpsIP31758_4136 YpsIP31758_4136 YpsIP31758_4136 4668478 4669122 - conserved hypothetical protein identified by similarity to GB:AAU46478.1 gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4136 YpsIP31758_4137 YpsIP31758_4137 tkrA tkrA 4669641 4670621 + 2-ketogluconate reductase identified by similarity to SP:P37666%3B match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4137 YpsIP31758_4138 YpsIP31758_4138 malS malS 4670910 4672973 + alpha-amylase identified by similarity to SP:P25718%3B match to protein family HMM PF00128 gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4138 YpsIP31758_4139 YpsIP31758_4139 YpsIP31758_4139 4673387 4673830 + hypothetical protein identified by glimmer%3B putative gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4139 YpsIP31758_4140 YpsIP31758_4140 YpsIP31758_4140 4674286 4675551 + aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4140 YpsIP31758_4141 YpsIP31758_4141 YpsIP31758_4141 4675664 4677322 - putative transport protein YidE identified by match to protein family HMM PF02080%3B match to protein family HMM PF06826%3B match to protein family HMM TIGR01625 gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4141 YpsIP31758_4142 YpsIP31758_4142 ibpB ibpB 4677695 4678159 - small heat shock protein IbpB identified by similarity to SP:P0C058%3B match to protein family HMM PF00011 gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4142 YpsIP31758_4143 YpsIP31758_4143 ibpA ibpA 4678440 4678853 - small heat shock protein IbpA identified by similarity to SP:P0C054%3B match to protein family HMM PF00011 gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4143 YpsIP31758_4144 YpsIP31758_4144 YpsIP31758_4144 4679221 4679559 + putative lipoprotein identified by match to protein family HMM PF07119 gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4144 YpsIP31758_4145 YpsIP31758_4145 YpsIP31758_4145 4679599 4680214 - conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4145 YpsIP31758_4146 YpsIP31758_4146 YpsIP31758_4146 4680422 4681384 + putative threonine ammonia-lyase%2C catabolic identified by match to protein family HMM PF00291 gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4146 YpsIP31758_4147 YpsIP31758_4147 YpsIP31758_4147 4681378 4682331 + Ornithine cyclodeaminase/mu-crystallin family identified by match to protein family HMM PF02423 gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4147 YpsIP31758_4148 YpsIP31758_4148 YpsIP31758_4148 4682369 4682593 + conserved hypothetical protein identified by similarity to RF:ZP_00793549.1 gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4148 YpsIP31758_4149 YpsIP31758_4149 YpsIP31758_4149 4683069 4683878 - Cof-like hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4149 YpsIP31758_4150 YpsIP31758_4150 gyrB gyrB 4684094 4686508 - DNA gyrase%2C B subunit identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059 gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4150 YpsIP31758_4151 YpsIP31758_4151 YpsIP31758_4151 4686528 4687613 - DNA replication and repair protein recF identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00611 gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4151 YpsIP31758_4152 YpsIP31758_4152 dnaN dnaN 4687786 4688886 - DNA polymerase III%2C beta subunit identified by match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663 gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4152 YpsIP31758_4153 YpsIP31758_4153 dnaA dnaA 4688891 4690279 - chromosomal replication initiator protein DnaA identified by similarity to SP:P03004%3B match to protein family HMM PF00308%3B match to protein family HMM TIGR00362 gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4153 YpsIP31758_4154 YpsIP31758_4154 rpmH rpmH 4690995 4691135 + ribosomal protein L34 identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030 gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4154 YpsIP31758_4155 YpsIP31758_4155 rnpA rnpA 4691154 4691513 + ribonuclease P protein component identified by match to protein family HMM PF00825%3B match to protein family HMM TIGR00188 gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4155 YpsIP31758_4156 YpsIP31758_4156 YpsIP31758_4156 4693351 4693521 - hypothetical protein identified by glimmer%3B putative gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4156 YpsIP31758_4157 YpsIP31758_4157 YpsIP31758_4157 4691737 4693377 + inner membrane protein OxaA identified by match to protein family HMM PF02096 gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4157 YpsIP31758_4158 YpsIP31758_4158 trmE trmE 4693520 4694884 + tRNA modification GTPase TrmE identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00450%3B match to protein family HMM TIGR00650 gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4158 YpsIP31758_4159 YpsIP31758_4159 YpsIP31758_4159 4695091 4696290 + alcohol dehydrogenase%2C short-chain family identified by match to protein family HMM PF07055 gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4159 YpsIP31758_4160 YpsIP31758_4160 YpsIP31758_4160 4696373 4696786 - conserved hypothetical protein identified by similarity to GB:CAH22065.1%3B match to protein family HMM PF06836 gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4160 YpsIP31758_4161 YpsIP31758_4161 YpsIP31758_4161 4697020 4698348 - purine transporter%2C AzgA family identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916 gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4161 YpsIP31758_4162 YpsIP31758_4162 YpsIP31758_4162 4698841 4699509 + HAD hydrolase%2C IA family identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4162 YpsIP31758_4163 YpsIP31758_4163 YpsIP31758_4163 4699525 4700280 - polar amino amino acid ABC transporter%2C PAAT family%2C permease protein identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4163 YpsIP31758_4164 YpsIP31758_4164 YpsIP31758_4164 4700282 4701019 - polar amino amino acid ABC transporter%2C PAAT family%2C permease protein identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4164 YpsIP31758_4165 YpsIP31758_4165 YpsIP31758_4165 4701202 4702056 - polar amino acid uptake ABC transporter%2C PAAT family%2C periplasmic amino acid-binding protein identified by match to protein family HMM PF00497 gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4165 YpsIP31758_4166 YpsIP31758_4166 YpsIP31758_4166 4702276 4702908 - conserved hypothetical protein identified by similarity to GB:CAG73284.1%3B match to protein family HMM PF04519 gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4166 YpsIP31758_4167 YpsIP31758_4167 phoU phoU 4703243 4703965 - phosphate transport system regulatory protein PhoU identified by similarity to SP:P0A9K7%3B match to protein family HMM PF01895%3B match to protein family HMM TIGR02135 gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4167 YpsIP31758_4168 YpsIP31758_4168 pstB1 pstB1 4704053 4704829 - phosphate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972 gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4168 YpsIP31758_4169 YpsIP31758_4169 pstA1 pstA1 4704910 4705797 - phosphate ABC transporter%2C permease protein PstA identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974 gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4169 YpsIP31758_4170 YpsIP31758_4170 pstC2 pstC2 4705799 4706755 - phosphate ABC transporter%2C permease protein PstC identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR02138 gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4170 YpsIP31758_4171 YpsIP31758_4171 pstS pstS 4706985 4708025 - phosphate ABC transporter%2C phosphate-binding protein PstS identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR00975 gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4171 YpsIP31758_4172 YpsIP31758_4172 YpsIP31758_4172 4708230 4708349 + hypothetical protein identified by glimmer%3B putative gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4172 YpsIP31758_4173 YpsIP31758_4173 glmS glmS 4708508 4710337 - glucosamine--fructose-6-phosphate aminotransferase%2C isomerizing identified by match to protein family HMM PF00310%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR01135 gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4173 YpsIP31758_4174 YpsIP31758_4174 glmU glmU 4710538 4711908 - UDP-N-acetylglucosamine pyrophosphorylase identified by match to protein family HMM PF00132%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR01173 gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4174 YpsIP31758_4175 YpsIP31758_4175 atpC atpC 4712529 4712951 - ATP synthase F1%2C epsilon subunit identified by match to protein family HMM PF00401%3B match to protein family HMM PF02823%3B match to protein family HMM TIGR01216 gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4175 YpsIP31758_4176 YpsIP31758_4176 atpD atpD 4712973 4714355 - ATP synthase F1%2C beta subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039 gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4176 YpsIP31758_4177 YpsIP31758_4177 atpG atpG 4714511 4715374 - ATP synthase F1%2C gamma subunit identified by match to protein family HMM PF00231%3B match to protein family HMM TIGR01146 gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4177 YpsIP31758_4178 YpsIP31758_4178 atpA atpA 4715436 4716977 - ATP synthase F1%2C alpha subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR00962 gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4178 YpsIP31758_4179 YpsIP31758_4179 atpH atpH 4716992 4717525 - ATP synthase F1%2C delta subunit identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145 gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4179 YpsIP31758_4180 YpsIP31758_4180 atpF atpF 4717540 4718010 - ATP synthase F0%2C B subunit identified by match to protein family HMM PF00430%3B match to protein family HMM TIGR01144 gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4180 YpsIP31758_4181 YpsIP31758_4181 atpE atpE 4718072 4718311 - ATP synthase F0%2C C subunit identified by match to protein family HMM PF00137%3B match to protein family HMM TIGR01260 gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4181 YpsIP31758_4182 YpsIP31758_4182 atpB atpB 4718361 4719185 - ATP synthase F0%2C A subunit identified by match to protein family HMM PF00119%3B match to protein family HMM TIGR01131 gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4182 YpsIP31758_4183 YpsIP31758_4183 atpI atpI 4719241 4719624 - ATP synthase F0%2C I subunit identified by match to protein family HMM PF03899 gene gene4289 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4183 YpsIP31758_4184 YpsIP31758_4184 gidB gidB 4720291 4720911 - methyltransferase GidB identified by similarity to SP:P44728%3B match to protein family HMM PF02527%3B match to protein family HMM TIGR00138 gene gene4290 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4184 YpsIP31758_4185 YpsIP31758_4185 YpsIP31758_4185 4720959 4721060 - hypothetical protein identified by glimmer%3B putative gene gene4291 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4185 YpsIP31758_4186 YpsIP31758_4186 gidA gidA 4721057 4722946 - glucose-inhibited division protein A also called tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA (PS:P0A6U3)%3B identified by similarity to SP:P0A6U3%3B match to protein family HMM PF01134%3B match to protein family HMM PF01266%3B match to protein family HMM TIGR00136 gene gene4292 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4186 YpsIP31758_4189 YpsIP31758_4189 rrsA rrsA 12024 13501 + 16S ribosomal RNA rRNA gene11 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4189 YpsIP31758_4190 YpsIP31758_4190 YpsIP31758_4190 13678 13755 + tRNA-Glu tRNA gene12 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4190 YpsIP31758_4191 YpsIP31758_4191 rrlA rrlA 14007 16913 + 23S ribosomal RNA rRNA gene13 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4191 YpsIP31758_4192 YpsIP31758_4192 rrfA rrfA 17021 17140 + 5S ribosomal RNA rRNA gene14 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4192 YpsIP31758_4193 YpsIP31758_4193 rrsB rrsB 159801 161278 + 16S ribosomal RNA rRNA gene146 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4193 YpsIP31758_4194 YpsIP31758_4194 YpsIP31758_4194 161455 161532 + tRNA-Glu tRNA gene147 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4194 YpsIP31758_4195 YpsIP31758_4195 rrlB rrlB 161784 164690 + 23S ribosomal RNA rRNA gene148 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4195 YpsIP31758_4196 YpsIP31758_4196 rrfB rrfB 164798 164917 + 5S ribosomal RNA rRNA gene149 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4196 YpsIP31758_4197 YpsIP31758_4197 YpsIP31758_4197 165040 165118 + tRNA-Asp tRNA gene150 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4197 YpsIP31758_4198 YpsIP31758_4198 YpsIP31758_4198 165125 165202 + tRNA-Trp tRNA gene151 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4198 YpsIP31758_4199 YpsIP31758_4199 YpsIP31758_4199 221179 221255 + tRNA-Arg tRNA gene200 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4199 YpsIP31758_4200 YpsIP31758_4200 YpsIP31758_4200 221338 221415 + tRNA-His tRNA gene201 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4200 YpsIP31758_4201 YpsIP31758_4201 YpsIP31758_4201 221430 221518 + tRNA-Leu tRNA gene202 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4201 YpsIP31758_4202 YpsIP31758_4202 YpsIP31758_4202 221592 221670 + tRNA-Pro tRNA gene203 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4202 YpsIP31758_4203 YpsIP31758_4203 rrsC rrsC 322816 324293 + 16S ribosomal RNA rRNA gene297 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4203 YpsIP31758_4204 YpsIP31758_4204 YpsIP31758_4204 324436 324514 + tRNA-Ile tRNA gene298 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4204 YpsIP31758_4205 YpsIP31758_4205 YpsIP31758_4205 324564 324641 + tRNA-Ala tRNA gene299 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4205 YpsIP31758_4206 YpsIP31758_4206 rrlC rrlC 324859 327765 + 23S ribosomal RNA rRNA gene300 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4206 YpsIP31758_4207 YpsIP31758_4207 YpsIP31758_4207 328005 328082 + tRNA-Thr tRNA gene302 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4207 YpsIP31758_4208 YpsIP31758_4208 rrfC rrfC 328120 328239 + 5S ribosomal RNA rRNA gene303 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4208 YpsIP31758_4209 YpsIP31758_4209 YpsIP31758_4209 649301 649379 - tRNA-Met tRNA gene568 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4209 YpsIP31758_4210 YpsIP31758_4210 YpsIP31758_4210 977582 977659 - tRNA-Phe tRNA gene826 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4210 YpsIP31758_4211 YpsIP31758_4211 YpsIP31758_4211 1068026 1068099 + tRNA-Gly tRNA gene902 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4211 YpsIP31758_4212 YpsIP31758_4212 YpsIP31758_4212 1195603 1195679 - tRNA-Met tRNA gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4212 YpsIP31758_4213 YpsIP31758_4213 YpsIP31758_4213 1195740 1195816 - tRNA-Met tRNA gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4213 YpsIP31758_4214 YpsIP31758_4214 YpsIP31758_4214 1195984 1196060 - tRNA-Met tRNA gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4214 YpsIP31758_4215 YpsIP31758_4215 rrsD rrsD 1247834 1249311 + 16S ribosomal RNA rRNA gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4215 YpsIP31758_4216 YpsIP31758_4216 YpsIP31758_4216 1249488 1249565 + tRNA-Glu tRNA gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4216 YpsIP31758_4217 YpsIP31758_4217 rrlD rrlD 1249817 1252723 + 23S ribosomal RNA rRNA gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4217 YpsIP31758_4218 YpsIP31758_4218 rrfD rrfD 1252831 1252950 + 5S ribosomal RNA rRNA gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4218 YpsIP31758_4219 YpsIP31758_4219 YpsIP31758_4219 1253073 1253151 + tRNA-Asp tRNA gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4219 YpsIP31758_4220 YpsIP31758_4220 YpsIP31758_4220 1260509 1260587 + tRNA-Asp tRNA gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4220 YpsIP31758_4221 YpsIP31758_4221 YpsIP31758_4221 1550997 1551074 - tRNA-Ala tRNA gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4221 YpsIP31758_4222 YpsIP31758_4222 YpsIP31758_4222 1551150 1551227 - tRNA-Ala tRNA gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4222 YpsIP31758_4223 YpsIP31758_4223 YpsIP31758_4223 1553148 1553223 + tRNA-Val tRNA gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4223 YpsIP31758_4224 YpsIP31758_4224 YpsIP31758_4224 1553260 1553335 + tRNA-Val tRNA gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4224 YpsIP31758_4225 YpsIP31758_4225 YpsIP31758_4225 1553379 1553456 + tRNA-Val tRNA gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4225 YpsIP31758_4226 YpsIP31758_4226 YpsIP31758_4226 1553654 1553731 + tRNA-Lys tRNA gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4226 YpsIP31758_4227 YpsIP31758_4227 YpsIP31758_4227 1622954 1623028 + tRNA-Arg tRNA gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4227 YpsIP31758_4228 YpsIP31758_4228 YpsIP31758_4228 2025240 2025318 - tRNA-Val tRNA gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4228 YpsIP31758_4229 YpsIP31758_4229 YpsIP31758_4229 2025467 2025545 - tRNA-Val tRNA gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4229 YpsIP31758_4230 YpsIP31758_4230 YpsIP31758_4230 2025603 2025681 - tRNA-Val tRNA gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4230 YpsIP31758_4231 YpsIP31758_4231 YpsIP31758_4231 2275524 2275610 + tRNA-Tyr tRNA gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4231 YpsIP31758_4232 YpsIP31758_4232 YpsIP31758_4232 2275674 2275760 + tRNA-Tyr tRNA gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4232 YpsIP31758_4233 YpsIP31758_4233 YpsIP31758_4233 2366861 2366952 + tRNA-Ser tRNA gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4233 YpsIP31758_4234 YpsIP31758_4234 YpsIP31758_4234 2374510 2374601 + tRNA-Ser tRNA gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4234 YpsIP31758_4235 YpsIP31758_4235 YpsIP31758_4235 2494338 2494415 + tRNA-Asn tRNA gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4235 YpsIP31758_4236 YpsIP31758_4236 YpsIP31758_4236 2557109 2557194 - tRNA-Leu tRNA gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4236 YpsIP31758_4237 YpsIP31758_4237 YpsIP31758_4237 2557204 2557279 - tRNA-Cys tRNA gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4237 YpsIP31758_4238 YpsIP31758_4238 YpsIP31758_4238 2557331 2557406 - tRNA-Gly tRNA gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4238 YpsIP31758_4239 YpsIP31758_4239 YpsIP31758_4239 2563856 2563933 - tRNA-Lys tRNA gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4239 YpsIP31758_4240 YpsIP31758_4240 YpsIP31758_4240 2693239 2693316 + tRNA-Asn tRNA gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4240 YpsIP31758_4241 YpsIP31758_4241 YpsIP31758_4241 2704257 2704334 + tRNA-Asn tRNA gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4241 YpsIP31758_4242 YpsIP31758_4242 YpsIP31758_4242 2861232 2861321 - tRNA-Ser tRNA gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4242 YpsIP31758_4243 YpsIP31758_4243 YpsIP31758_4243 3079302 3079380 + tRNA-Pro tRNA gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4243 YpsIP31758_4244 YpsIP31758_4244 YpsIP31758_4244 3111104 3111179 - tRNA-Thr tRNA gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4244 YpsIP31758_4245 YpsIP31758_4245 YpsIP31758_4245 3111184 3111273 - tRNA-Ser tRNA gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4245 YpsIP31758_4246 YpsIP31758_4246 YpsIP31758_4246 3235183 3235253 - tRNA-OTHER pseudogenic_tRNA gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4246 YpsIP31758_4247 YpsIP31758_4247 YpsIP31758_4247 3235350 3235420 - tRNA-Lys tRNA gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4247 YpsIP31758_4248 YpsIP31758_4248 YpsIP31758_4248 3235517 3235587 - tRNA-Lys tRNA gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4248 YpsIP31758_4249 YpsIP31758_4249 YpsIP31758_4249 3235684 3235754 - tRNA-OTHER pseudogenic_tRNA gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4249 YpsIP31758_4250 YpsIP31758_4250 YpsIP31758_4250 3235782 3235857 - tRNA-Lys tRNA gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4250 YpsIP31758_4251 YpsIP31758_4251 YpsIP31758_4251 3235885 3235960 - tRNA-Lys tRNA gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4251 YpsIP31758_4252 YpsIP31758_4252 YpsIP31758_4252 3235988 3236063 - tRNA-Lys tRNA gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4252 YpsIP31758_4253 YpsIP31758_4253 YpsIP31758_4253 3236090 3236167 - tRNA-Lys tRNA gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4253 YpsIP31758_4254 YpsIP31758_4254 YpsIP31758_4254 3263983 3264346 + gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4254 YpsIP31758_4255 YpsIP31758_4255 YpsIP31758_4255 3286365 3286443 + tRNA-Met tRNA gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4255 YpsIP31758_4256 YpsIP31758_4256 YpsIP31758_4256 3286449 3286535 + tRNA-Leu tRNA gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4256 YpsIP31758_4257 YpsIP31758_4257 YpsIP31758_4257 3286564 3286638 + tRNA-Gln tRNA gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4257 YpsIP31758_4258 YpsIP31758_4258 YpsIP31758_4258 3286721 3286797 + tRNA-Gln tRNA gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4258 YpsIP31758_4259 YpsIP31758_4259 YpsIP31758_4259 3286828 3286906 + tRNA-Met tRNA gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4259 YpsIP31758_4260 YpsIP31758_4260 YpsIP31758_4260 3286910 3286986 + tRNA-Gln tRNA gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4260 YpsIP31758_4261 YpsIP31758_4261 YpsIP31758_4261 3391250 3391328 - tRNA-Arg tRNA gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4261 YpsIP31758_4262 YpsIP31758_4262 rrfE rrfE 3612672 3612791 - 5S ribosomal RNA rRNA gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4262 YpsIP31758_4263 YpsIP31758_4263 rrlE rrlE 3612899 3615805 - 23S ribosomal RNA rRNA gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4263 YpsIP31758_4264 YpsIP31758_4264 YpsIP31758_4264 3616023 3616100 - tRNA-Ala tRNA gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4264 YpsIP31758_4265 YpsIP31758_4265 YpsIP31758_4265 3616150 3616228 - tRNA-Ile tRNA gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4265 YpsIP31758_4266 YpsIP31758_4266 rrsE rrsE 3616371 3617848 - 16S ribosomal RNA rRNA gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4266 YpsIP31758_4267 YpsIP31758_4267 YpsIP31758_4267 3642656 3642727 - tRNA-OTHER pseudogenic_tRNA gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4267 YpsIP31758_4268 YpsIP31758_4268 YpsIP31758_4268 3642806 3642884 - tRNA-Arg tRNA gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4268 YpsIP31758_4269 YpsIP31758_4269 YpsIP31758_4269 3642962 3643040 - tRNA-Arg tRNA gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4269 YpsIP31758_4270 YpsIP31758_4270 YpsIP31758_4270 3643096 3643174 - tRNA-Arg tRNA gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4270 YpsIP31758_4271 YpsIP31758_4271 YpsIP31758_4271 3643181 3643275 - tRNA-Ser tRNA gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4271 YpsIP31758_4272 YpsIP31758_4272 YpsIP31758_4272 3958156 3958242 + tRNA-Leu tRNA gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4272 YpsIP31758_4273 YpsIP31758_4273 YpsIP31758_4273 3958338 3958426 + tRNA-Leu tRNA gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4273 YpsIP31758_4274 YpsIP31758_4274 YpsIP31758_4274 3958539 3958625 + tRNA-Leu tRNA gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4274 YpsIP31758_4275 YpsIP31758_4275 YpsIP31758_4275 4000577 4000663 - tRNA-Leu tRNA gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4275 YpsIP31758_4276 YpsIP31758_4276 YpsIP31758_4276 4064543 4064619 - tRNA-Met tRNA gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4276 YpsIP31758_4277 YpsIP31758_4277 YpsIP31758_4277 4064679 4064767 - tRNA-Leu tRNA gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4277 YpsIP31758_4278 YpsIP31758_4278 YpsIP31758_4278 4126771 4126846 - tRNA-Gly tRNA gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4278 YpsIP31758_4279 YpsIP31758_4279 YpsIP31758_4279 4126914 4126989 - tRNA-Gly tRNA gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4279 YpsIP31758_4280 YpsIP31758_4280 YpsIP31758_4280 4127080 4127157 - tRNA-Gly tRNA gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4280 YpsIP31758_4281 YpsIP31758_4281 YpsIP31758_4281 4157183 4157260 + tRNA-Phe tRNA gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4281 YpsIP31758_4282 YpsIP31758_4282 rrfF rrfF 4323713 4323832 - 5S ribosomal RNA rRNA gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4282 YpsIP31758_4283 YpsIP31758_4283 rrlF rrlF 4323940 4326846 - 23S ribosomal RNA rRNA gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4283 YpsIP31758_4284 YpsIP31758_4284 YpsIP31758_4284 4327097 4327174 - tRNA-Glu tRNA gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4284 YpsIP31758_4285 YpsIP31758_4285 rrsF rrsF 4327351 4328828 - 16S ribosomal RNA rRNA gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4285 YpsIP31758_4286 YpsIP31758_4286 YpsIP31758_4286 4359497 4359574 - tRNA-Thr tRNA gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4286 YpsIP31758_4287 YpsIP31758_4287 YpsIP31758_4287 4359580 4359654 - tRNA-Gly tRNA gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4287 YpsIP31758_4288 YpsIP31758_4288 YpsIP31758_4288 4359804 4359888 - tRNA-Tyr tRNA gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4288 YpsIP31758_4289 YpsIP31758_4289 YpsIP31758_4289 4359906 4359983 - tRNA-Thr tRNA gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4289 YpsIP31758_4290 YpsIP31758_4290 rrfG rrfG 4365284 4365403 - 5S ribosomal RNA rRNA gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4290 YpsIP31758_4291 YpsIP31758_4291 rrlG rrlG 4365511 4368417 - 23S ribosomal RNA rRNA gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4291 YpsIP31758_4292 YpsIP31758_4292 YpsIP31758_4292 4368635 4368712 - tRNA-Ala tRNA gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4292 YpsIP31758_4293 YpsIP31758_4293 YpsIP31758_4293 4368762 4368840 - tRNA-Ile tRNA gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4293 YpsIP31758_4294 YpsIP31758_4294 rrsG rrsG 4368983 4370460 - 16S ribosomal RNA rRNA gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4294 YpsIP31758_4295 YpsIP31758_4295 YpsIP31758_4295 4597616 4597694 - tRNA-Pro tRNA gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4295 YpsIP31758_4296 YpsIP31758_4296 YpsIP31758_4296 4621124 4621218 - tRNA-Sec tRNA gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4296 YpsIP31758_4297 YpsIP31758_4297 spf spf 25613 25730 + gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4297 YpsIP31758_4298 YpsIP31758_4298 YpsIP31758_4298 26868 27121 + gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4298 YpsIP31758_4300 YpsIP31758_4300 rrf rrf 327875 327990 + 5S ribosomal RNA rRNA gene301 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4300 YpsIP31758_4301 YpsIP31758_4301 YpsIP31758_4301 547912 548024 - gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4301 YpsIP31758_4302 YpsIP31758_4302 YpsIP31758_4302 554644 554946 + gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4302 YpsIP31758_4304 YpsIP31758_4304 YpsIP31758_4304 1037218 1037399 - gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4304 YpsIP31758_4305 YpsIP31758_4305 YpsIP31758_4305 1165923 1166017 + gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4305 YpsIP31758_4306 YpsIP31758_4306 gcvB gcvB 1200711 1200817 - gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4306 YpsIP31758_4307 YpsIP31758_4307 YpsIP31758_4307 1208063 1208385 + gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4307 YpsIP31758_4308 YpsIP31758_4308 YpsIP31758_4308 1215459 1215665 + gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4308 YpsIP31758_4309 YpsIP31758_4309 YpsIP31758_4309 1353391 1353555 - gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4309 YpsIP31758_4311 YpsIP31758_4311 YpsIP31758_4311 1418759 1418844 - gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4311 YpsIP31758_4312 YpsIP31758_4312 rprA rprA 2008789 2008897 - gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4312 YpsIP31758_4313 YpsIP31758_4313 YpsIP31758_4313 2063571 2063671 + gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4313 YpsIP31758_4314 YpsIP31758_4314 YpsIP31758_4314 2639150 2639399 + gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4314 YpsIP31758_4315 YpsIP31758_4315 YpsIP31758_4315 2639187 2639288 - gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4315 YpsIP31758_4316 YpsIP31758_4316 YpsIP31758_4316 2873877 2873946 + gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4316 YpsIP31758_4317 YpsIP31758_4317 rybB rybB 3004582 3004662 + gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4317 YpsIP31758_4318 YpsIP31758_4318 micF micF 3114232 3114318 + gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4318 YpsIP31758_4321 YpsIP31758_4321 sroB sroB 3409729 3409812 - gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4321 YpsIP31758_4322 YpsIP31758_4322 srpB srpB 3460689 3460788 - gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4322 YpsIP31758_4323 YpsIP31758_4323 sraD sraD 3639626 3639700 + gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4323 YpsIP31758_4325 YpsIP31758_4325 YpsIP31758_4325 4057624 4057805 + gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4325 YpsIP31758_4326 YpsIP31758_4326 YpsIP31758_4326 4058035 4058153 - gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4326 YpsIP31758_4329 YpsIP31758_4329 YpsIP31758_4329 4530557 4530660 - gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_4329 YpsIP31758_A0001 YpsIP31758_A0001 YpsIP31758_A0001 26005 27261 + bacterial shufflon protein%2C N-terminal constant region identified by match to protein family HMM PF04917 gene gene4455 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0001 YpsIP31758_A0002 YpsIP31758_A0002 YpsIP31758_A0002 27495 27896 + hypothetical protein identified by glimmer%3B putative gene gene4456 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0002 YpsIP31758_A0003 YpsIP31758_A0003 YpsIP31758_A0003 27901 28332 + type IV pilus biogenesis protein PilM identified by similarity to GB:BAB12660.1 gene gene4457 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0003 YpsIP31758_A0004 YpsIP31758_A0004 YpsIP31758_A0004 28344 28967 + putative membrane protein gene gene4458 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0004 YpsIP31758_A0005 YpsIP31758_A0005 YpsIP31758_A0005 28986 29492 + transglycosylase SLT domain identified by match to protein family HMM PF01464 gene gene4459 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0005 YpsIP31758_A0006 YpsIP31758_A0006 YpsIP31758_A0006 29517 30002 + conserved hypothetical protein gene gene4460 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0006 YpsIP31758_A0007 YpsIP31758_A0007 YpsIP31758_A0007 30036 30335 + conserved hypothetical protein possibly involved in plasmid conjugation gene gene4461 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0007 YpsIP31758_A0008 YpsIP31758_A0008 YpsIP31758_A0008 30468 30716 + conserved hypothetical protein similar to hypothetical protein from Yersinia pseudotuberculosis IP 32953%2C GenBank Accession Number BX936400.1 gene gene4462 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0008 YpsIP31758_A0009 YpsIP31758_A0009 YpsIP31758_A0009 30797 31144 + single-strand binding protein family protein identified by match to protein family HMM PF00436 gene gene4463 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0009 YpsIP31758_A0010 YpsIP31758_A0010 YpsIP31758_A0010 32134 32799 - conserved hypothetical protein similar to hypothetical protein from Yersinia pestis pG8786 plasmid%2C GenBank Accession Number AJ698720.1 gene gene4464 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0010 YpsIP31758_A0011 YpsIP31758_A0011 YpsIP31758_A0011 32812 32982 - hypothetical protein identified by glimmer%3B putative gene gene4465 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0011 YpsIP31758_A0012 YpsIP31758_A0012 YpsIP31758_A0012 33378 33923 + hypothetical protein identified by glimmer%3B putative gene gene4466 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0012 YpsIP31758_A0013 YpsIP31758_A0013 YpsIP31758_A0013 34385 34684 + hypothetical protein identified by glimmer%3B putative gene gene4467 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0013 YpsIP31758_A0014 YpsIP31758_A0014 YpsIP31758_A0014 35038 35337 + hypothetical protein identified by glimmer%3B putative gene gene4468 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0014 YpsIP31758_A0015 YpsIP31758_A0015 YpsIP31758_A0015 35377 35859 + type IV pilus biogenesis protein PilT gene gene4469 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0015 YpsIP31758_A0016 YpsIP31758_A0016 YpsIP31758_A0016 36026 36691 - surface exclusion protien identified by match to protein family HMM PF02517 gene gene4470 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0016 YpsIP31758_A0017 YpsIP31758_A0017 YpsIP31758_A0017 36756 37538 - hypothetical protein identified by glimmer%3B putative gene gene4471 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0017 YpsIP31758_A0018 YpsIP31758_A0018 YpsIP31758_A0018 37549 38265 - hypothetical protein identified by glimmer%3B putative gene gene4472 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0018 YpsIP31758_A0019 YpsIP31758_A0019 YpsIP31758_A0019 38579 39370 + putative integrase/resolvase identified by match to protein family HMM PF00589 gene gene4473 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0019 YpsIP31758_A0020 YpsIP31758_A0020 YpsIP31758_A0020 39675 42635 - DNA primase TraC identified by similarity to SP:P27189%3B match to protein family HMM PF01751 gene gene4475 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0020 YpsIP31758_A0021 YpsIP31758_A0021 YpsIP31758_A0021 39534 39689 + hypothetical protein identified by glimmer%3B putative gene gene4474 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0021 YpsIP31758_A0022 YpsIP31758_A0022 YpsIP31758_A0022 42628 42861 - putative conjugal transfer protein TraD identified by similarity to SP:P27193 gene gene4476 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0022 YpsIP31758_A0023 YpsIP31758_A0023 YpsIP31758_A0023 42867 44906 - DNA topoisomerase III identified by match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01056 gene gene4477 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0023 YpsIP31758_A0024 YpsIP31758_A0024 YpsIP31758_A0024 44942 45466 - conjugal transfer protein TraF identified by match to protein family HMM TIGR02771 gene gene4478 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0024 YpsIP31758_A0025 YpsIP31758_A0025 YpsIP31758_A0025 45463 47400 - conjugal transfer protein TraG identified by similarity to SP:Q00185%3B match to protein family HMM PF02534 gene gene4479 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0025 YpsIP31758_A0026 YpsIP31758_A0026 YpsIP31758_A0026 47397 50018 - conjugal transfer protein TraI identified by match to protein family HMM PF03432 gene gene4480 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0026 YpsIP31758_A0027 YpsIP31758_A0027 YpsIP31758_A0027 50056 50412 - conjugal transfer protein TraJ identified by similarity to SP:P17909 gene gene4481 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0027 YpsIP31758_A0028 YpsIP31758_A0028 YpsIP31758_A0028 50435 50554 - hypothetical protein identified by glimmer%3B putative gene gene4482 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0028 YpsIP31758_A0029 YpsIP31758_A0029 YpsIP31758_A0029 50746 51123 + conjugal transfer protein TraK gene gene4483 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0029 YpsIP31758_A0030 YpsIP31758_A0030 YpsIP31758_A0030 51135 51863 + conjugal transfer protein TraL gene gene4484 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0030 YpsIP31758_A0031 YpsIP31758_A0031 YpsIP31758_A0031 51860 52300 + putative conjugal transfer protein TraM gene gene4485 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0031 YpsIP31758_A0032 YpsIP31758_A0032 YpsIP31758_A0032 52464 53483 - phosphoribosyltransferase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene4486 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0032 YpsIP31758_A0033 YpsIP31758_A0033 YpsIP31758_A0033 53734 54021 + conserved hypothetical protein identified by similarity to GB:AAZ38110.1 gene gene4487 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0033 YpsIP31758_A0034 YpsIP31758_A0034 YpsIP31758_A0034 54309 54728 + conserved hypothetical protein gene gene4488 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0034 YpsIP31758_A0035 YpsIP31758_A0035 YpsIP31758_A0035 54761 55000 + conserved hypothetical protein gene gene4489 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0035 YpsIP31758_A0036 YpsIP31758_A0036 YpsIP31758_A0036 55088 55408 - hypothetical protein identified by glimmer%3B putative gene gene4490 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0036 YpsIP31758_A0037 YpsIP31758_A0037 YpsIP31758_A0037 55522 56574 - transcription repressor protein KorB identified by similarity to SP:P07674%3B match to protein family HMM PF02195%3B match to protein family HMM PF06613%3B match to protein family HMM TIGR00180 gene gene4491 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0037 YpsIP31758_A0038 YpsIP31758_A0038 YpsIP31758_A0038 56571 57656 - plasmid partition protein identified by match to protein family HMM PF01656 gene gene4492 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0038 YpsIP31758_A0040 YpsIP31758_A0040 YpsIP31758_A0040 57838 58155 - putative stable inheritance protein gene gene4493 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0040 YpsIP31758_A0041 YpsIP31758_A0041 YpsIP31758_A0041 519 1556 - conserved hypothetical protein identified by similarity to GB:AAR13133.1 gene gene4429 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0041 YpsIP31758_A0042 YpsIP31758_A0042 YpsIP31758_A0042 1836 2138 - plasmid stabilization system protein%2C RelE/ParE family identified by match to protein family HMM PF05016 gene gene4430 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0042 YpsIP31758_A0043 YpsIP31758_A0043 YpsIP31758_A0043 2126 2416 - conserved hypothetical protein gene gene4431 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0043 YpsIP31758_A0044 YpsIP31758_A0044 YpsIP31758_A0044 3354 3650 - hypothetical protein identified by glimmer%3B putative gene gene4432 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0044 YpsIP31758_A0045 YpsIP31758_A0045 YpsIP31758_A0045 3928 4839 - conserved hypothetical protein similar to Atu6113 from A. tumifaciens C58 pTi plasmid gene gene4433 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0045 YpsIP31758_A0046 YpsIP31758_A0046 YpsIP31758_A0046 5634 6002 + conjugal transfer protein TrbA identified by match to protein family HMM PF01381 gene gene4434 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0046 YpsIP31758_A0047 YpsIP31758_A0047 YpsIP31758_A0047 6020 7120 + conjugal transfer protein TrbB identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR02782 gene gene4435 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0047 YpsIP31758_A0048 YpsIP31758_A0048 YpsIP31758_A0048 7133 7513 + conjugal transfer protein TrbC identified by match to protein family HMM PF04956 gene gene4436 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0048 YpsIP31758_A0049 YpsIP31758_A0049 YpsIP31758_A0049 7516 7830 + conjugal transfer protein TrbD mating pair formation%3B identified by match to protein family HMM PF05245 gene gene4437 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0049 YpsIP31758_A0050 YpsIP31758_A0050 YpsIP31758_A0050 7823 10360 + conjugal transfer protein TrbE identified by match to protein family HMM PF03135%3B match to protein family HMM TIGR00929 gene gene4438 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0050 YpsIP31758_A0051 YpsIP31758_A0051 YpsIP31758_A0051 10357 11079 + conjugal transfer protein TrbF identified by match to protein family HMM PF04585 gene gene4439 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0051 YpsIP31758_A0052 YpsIP31758_A0052 YpsIP31758_A0052 11094 11981 + conjugal transfer protein TrbG identified by similarity to SP:P55404%3B match to protein family HMM PF03524%3B match to protein family HMM TIGR02775 gene gene4440 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0052 YpsIP31758_A0053 YpsIP31758_A0053 YpsIP31758_A0053 11984 12433 + conjugal transfer protein TrbH identified by match to protein family HMM PF07283 gene gene4441 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0053 YpsIP31758_A0054 YpsIP31758_A0054 YpsIP31758_A0054 12438 13817 + conjugal transfer protein TrbI identified by match to protein family HMM PF03743 gene gene4442 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0054 YpsIP31758_A0055 YpsIP31758_A0055 YpsIP31758_A0055 13835 14611 + conjugal transfer protein TrbJ identified by match to protein family HMM TIGR02780 gene gene4443 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0055 YpsIP31758_A0056 YpsIP31758_A0056 YpsIP31758_A0056 14774 16195 + conjugal transfer protein TrbL/VirB6 identified by match to protein family HMM PF04610%3B match to protein family HMM TIGR02783 gene gene4444 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0056 YpsIP31758_A0057 YpsIP31758_A0057 YpsIP31758_A0057 16248 16868 + conjugal transfer protein TrbN identified by match to protein family HMM PF01464 gene gene4445 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0057 YpsIP31758_A0058 YpsIP31758_A0058 YpsIP31758_A0058 16987 17466 + transcriptional activator identified by match to protein family HMM PF02357 gene gene4446 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0058 YpsIP31758_A0059 YpsIP31758_A0059 YpsIP31758_A0059 17489 18421 + putative secretion system protein PilL identified by similarity to GB:AAL05516.1 gene gene4447 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0059 YpsIP31758_A0060 YpsIP31758_A0060 YpsIP31758_A0060 18434 20140 + type IV pilus/secretion system protein%2C PilN family identified by match to protein family HMM PF07655%3B match to protein family HMM TIGR02520 gene gene4448 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0060 YpsIP31758_A0061 YpsIP31758_A0061 YpsIP31758_A0061 20150 21484 + putative type IV secretion system protein PilO2 gene gene4449 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0061 YpsIP31758_A0062 YpsIP31758_A0062 pilP2 pilP2 21471 21914 + type IV pilus biogenesis/secretion protein PilP identified by similarity to GB:AAP22530.1%3B match to protein family HMM TIGR03021 gene gene4450 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0062 YpsIP31758_A0063 YpsIP31758_A0063 YpsIP31758_A0063 21911 23443 + putative type IV secretion system protein PilQ identified by match to protein family HMM PF00437 gene gene4451 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0063 YpsIP31758_A0064 YpsIP31758_A0064 YpsIP31758_A0064 23436 24500 + putative type IV secretion system protein PilR identified by match to protein family HMM PF00482 gene gene4452 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0064 YpsIP31758_A0065 YpsIP31758_A0065 YpsIP31758_A0065 24517 25023 + putative type IV secretion system protein PilS2 gene gene4453 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0065 YpsIP31758_A0066 YpsIP31758_A0066 YpsIP31758_A0066 25039 25992 + type IV secretion system protein identified by match to protein family HMM PF00437 gene gene4454 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_A0066 YpsIP31758_B0001 YpsIP31758_B0001 YpsIP31758_B0001 151696 153015 - hypothetical protein identified by glimmer%3B putative gene gene4428 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0001 YpsIP31758_B0002 YpsIP31758_B0002 YpsIP31758_B0002 596 1870 + hypothetical protein identified by glimmer%3B putative gene gene4293 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0002 YpsIP31758_B0003 YpsIP31758_B0003 YpsIP31758_B0003 1964 8365 + helicase. putatve identified by match to protein family HMM PF00271 gene gene4294 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0003 YpsIP31758_B0004 YpsIP31758_B0004 YpsIP31758_B0004 8970 9767 + hypothetical protein identified by glimmer%3B putative gene gene4295 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0004 YpsIP31758_B0005 YpsIP31758_B0005 YpsIP31758_B0005 9787 10539 + hypothetical protein identified by glimmer%3B putative gene gene4296 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0005 YpsIP31758_B0006 YpsIP31758_B0006 YpsIP31758_B0006 10542 11687 + hypothetical protein identified by glimmer%3B putative gene gene4297 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0006 YpsIP31758_B0007 YpsIP31758_B0007 YpsIP31758_B0007 11698 12858 + putative lipoprotein gene gene4298 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0007 YpsIP31758_B0008 YpsIP31758_B0008 YpsIP31758_B0008 12938 13993 + M23 peptidase domain protein identified by match to protein family HMM PF01551 gene gene4299 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0008 YpsIP31758_B0009 YpsIP31758_B0009 YpsIP31758_B0009 14008 15687 + hypothetical protein identified by glimmer%3B putative gene gene4300 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0009 YpsIP31758_B0010 YpsIP31758_B0010 YpsIP31758_B0010 15793 16500 - type IV prepilin peptidase PilD identified by match to protein family HMM PF01478 gene gene4301 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0010 YpsIP31758_B0011 YpsIP31758_B0011 YpsIP31758_B0011 16497 16976 - conjugal transfer protein identified by match to protein family HMM PF01464 gene gene4302 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0011 YpsIP31758_B0012 YpsIP31758_B0012 YpsIP31758_B0012 17153 17611 + type IV pilus biogenesis protein PilM gene gene4303 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0012 YpsIP31758_B0013 YpsIP31758_B0013 YpsIP31758_B0013 17749 18915 + type IV pilus biosynthesis protein PilL identified by similarity to GB:AAL05516.1 gene gene4304 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0013 YpsIP31758_B0014 YpsIP31758_B0014 YpsIP31758_B0014 18931 20625 + type IV pilus biogenesis protein%2C PilN family identified by match to protein family HMM PF00263%3B match to protein family HMM PF07655%3B match to protein family HMM TIGR02520 gene gene4305 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0014 YpsIP31758_B0015 YpsIP31758_B0015 YpsIP31758_B0015 20716 22251 + type IV pilus biogenesis protein PilO2 gene gene4306 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0015 YpsIP31758_B0016 YpsIP31758_B0016 pilP3 pilP3 22238 22774 + type IV pilus biogenesis protein PilP identified by match to protein family HMM TIGR03021 gene gene4307 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0016 YpsIP31758_B0017 YpsIP31758_B0017 YpsIP31758_B0017 22802 24301 + type IV pilus biosynthesis protein PilQ identified by match to protein family HMM PF00437 gene gene4308 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0017 YpsIP31758_B0018 YpsIP31758_B0018 YpsIP31758_B0018 24350 25429 + bacterial type II secretion system protein F domain identified by match to protein family HMM PF00482 gene gene4309 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0018 YpsIP31758_B0019 YpsIP31758_B0019 YpsIP31758_B0019 25453 25980 + type IV prepilin domain protein PilS identified by match to protein family HMM TIGR02532 gene gene4310 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0019 YpsIP31758_B0020 YpsIP31758_B0020 YpsIP31758_B0020 26018 26974 + type IV secretion system protein PilT identified by match to protein family HMM PF00437 gene gene4311 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0020 YpsIP31758_B0021 YpsIP31758_B0021 YpsIP31758_B0021 26993 28279 + type IV pilus biogenesis protein PilV similarity to shufflon proteins%3B identified by match to protein family HMM PF04917%3B match to protein family HMM TIGR02532 gene gene4312 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0021 YpsIP31758_B0022 YpsIP31758_B0022 YpsIP31758_B0022 28990 30117 + shufflon-specific DNA recombinase identified by similarity to SP:P10487%3B match to protein family HMM PF00589 gene gene4313 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0022 YpsIP31758_B0023 YpsIP31758_B0023 YpsIP31758_B0023 30238 30870 - hypothetical protein identified by glimmer%3B putative gene gene4314 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0023 YpsIP31758_B0024 YpsIP31758_B0024 YpsIP31758_B0024 31069 31194 + hypothetical protein identified by glimmer%3B putative gene gene4315 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0024 YpsIP31758_B0025 YpsIP31758_B0025 YpsIP31758_B0025 31244 32746 - conserved hypothetical protein weak similarity to traC gene gene4316 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0025 YpsIP31758_B0026 YpsIP31758_B0026 YpsIP31758_B0026 32927 33907 + hypothetical protein identified by glimmer%3B putative gene gene4317 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0026 YpsIP31758_B0027 YpsIP31758_B0027 YpsIP31758_B0027 33907 34389 + hypothetical protein identified by glimmer%3B putative gene gene4318 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0027 YpsIP31758_B0028 YpsIP31758_B0028 YpsIP31758_B0028 34389 35030 + hypothetical protein identified by glimmer%3B putative gene gene4319 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0028 YpsIP31758_B0029 YpsIP31758_B0029 YpsIP31758_B0029 35096 35545 + hypothetical protein identified by glimmer%3B putative gene gene4320 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0029 YpsIP31758_B0030 YpsIP31758_B0030 YpsIP31758_B0030 35580 35987 + hypothetical protein identified by glimmer%3B putative gene gene4321 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0030 YpsIP31758_B0031 YpsIP31758_B0031 YpsIP31758_B0031 35996 37555 + putative DNA topoisomerase identified by match to protein family HMM PF01751 gene gene4322 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0031 YpsIP31758_B0032 YpsIP31758_B0032 YpsIP31758_B0032 37527 37994 + hypothetical protein identified by glimmer%3B putative gene gene4323 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0032 YpsIP31758_B0033 YpsIP31758_B0033 YpsIP31758_B0033 38031 40478 + putative DNA topoisomerase III identified by match to protein family HMM PF01131%3B match to protein family HMM PF01751 gene gene4324 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0033 YpsIP31758_B0034 YpsIP31758_B0034 YpsIP31758_B0034 40729 42777 + putative DNA replication primase identified by similarity to SP:P27189%3B similarity to GB:AAP70295.1 gene gene4325 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0034 YpsIP31758_B0035 YpsIP31758_B0035 YpsIP31758_B0035 42851 43351 + hypothetical protein identified by glimmer%3B putative gene gene4326 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0035 YpsIP31758_B0036 YpsIP31758_B0036 YpsIP31758_B0036 43466 44107 - hypothetical protein identified by glimmer%3B putative gene gene4327 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0036 YpsIP31758_B0037 YpsIP31758_B0037 YpsIP31758_B0037 44523 45080 + conserved hypothetical protein gene gene4328 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0037 YpsIP31758_B0038 YpsIP31758_B0038 YpsIP31758_B0038 45070 45666 + hypothetical protein identified by glimmer%3B putative gene gene4329 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0038 YpsIP31758_B0039 YpsIP31758_B0039 YpsIP31758_B0039 45659 46153 + hypothetical protein identified by glimmer%3B putative gene gene4330 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0039 YpsIP31758_B0040 YpsIP31758_B0040 YpsIP31758_B0040 46146 46808 + conserved hypothetical protein gene gene4331 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0040 YpsIP31758_B0041 YpsIP31758_B0041 YpsIP31758_B0041 47080 47271 + conserved hypothetical protein gene gene4332 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0041 YpsIP31758_B0042 YpsIP31758_B0042 YpsIP31758_B0042 47271 47531 + hypothetical protein identified by glimmer%3B putative gene gene4333 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0042 YpsIP31758_B0043 YpsIP31758_B0043 YpsIP31758_B0043 49007 49552 - hypothetical protein identified by glimmer%3B putative gene gene4334 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0043 YpsIP31758_B0044 YpsIP31758_B0044 YpsIP31758_B0044 49728 49934 + haemolysin expression modulating protein identified by similarity to SP:P23870%3B match to protein family HMM PF05321 gene gene4335 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0044 YpsIP31758_B0045 YpsIP31758_B0045 YpsIP31758_B0045 51008 51259 + hypothetical protein identified by glimmer%3B putative gene gene4336 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0045 YpsIP31758_B0046 YpsIP31758_B0046 YpsIP31758_B0046 51291 52031 + hypothetical protein identified by glimmer%3B putative gene gene4337 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0046 YpsIP31758_B0047 YpsIP31758_B0047 YpsIP31758_B0047 52482 53237 - conserved hypothetical protein gene gene4338 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0047 YpsIP31758_B0048 YpsIP31758_B0048 YpsIP31758_B0048 53494 53610 - transposase%2C truncation gene gene4339 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0048 YpsIP31758_B0049 YpsIP31758_B0049 YpsIP31758_B0049 53809 54195 - putative lipoprotein identified by similarity to GB:AAZ26481.1 gene gene4340 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0049 YpsIP31758_B0050 YpsIP31758_B0050 YpsIP31758_B0050 54197 55375 - conserved hypothetical protein gene gene4341 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0050 YpsIP31758_B0051 YpsIP31758_B0051 YpsIP31758_B0051 55378 55914 - conserved hypothetical protein gene gene4342 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0051 YpsIP31758_B0052 YpsIP31758_B0052 YpsIP31758_B0052 56448 56867 + mutagenesis and repair protein MucA identified by similarity to SP:P07376%3B match to protein family HMM PF00717 gene gene4343 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0052 YpsIP31758_B0053 YpsIP31758_B0053 YpsIP31758_B0053 56870 58135 + mutagenesis and repair protein MucB identified by similarity to SP:P07375%3B match to protein family HMM PF00817 gene gene4344 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0053 YpsIP31758_B0054 YpsIP31758_B0054 YpsIP31758_B0054 58370 58570 + conserved hypothetical protein gene gene4345 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0054 YpsIP31758_B0055 YpsIP31758_B0055 YpsIP31758_B0055 58563 59291 + conserved hypothetical protein gene gene4346 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0055 YpsIP31758_B0056 YpsIP31758_B0056 YpsIP31758_B0056 59791 60450 + hypothetical protein identified by glimmer%3B putative gene gene4347 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0056 YpsIP31758_B0057 YpsIP31758_B0057 YpsIP31758_B0057 60616 61206 + hypothetical protein identified by glimmer%3B putative gene gene4348 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0057 YpsIP31758_B0058 YpsIP31758_B0058 YpsIP31758_B0058 61336 62319 + hypothetical protein identified by glimmer%3B putative gene gene4349 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0058 YpsIP31758_B0059 YpsIP31758_B0059 YpsIP31758_B0059 62291 63076 + conserved hypothetical protein gene gene4350 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0059 YpsIP31758_B0060 YpsIP31758_B0060 YpsIP31758_B0060 63339 63545 + virulence modulating protein identified by similarity to SP:P27720%3B match to protein family HMM PF05321 gene gene4351 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0060 YpsIP31758_B0061 YpsIP31758_B0061 YpsIP31758_B0061 63912 65165 + hypothetical protein identified by glimmer%3B putative gene gene4352 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0061 YpsIP31758_B0062 YpsIP31758_B0062 YpsIP31758_B0062 65878 66474 + GTP cyclohydrolase II domain protein identified by match to protein family HMM PF00925 gene gene4353 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0062 YpsIP31758_B0063 YpsIP31758_B0063 YpsIP31758_B0063 66487 68148 + conserved domain protein identified by match to protein family HMM PF00400 gene gene4354 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0063 YpsIP31758_B0064 YpsIP31758_B0064 YpsIP31758_B0064 68249 69187 + conserved hypothetical protein identified by match to protein family HMM PF03781 gene gene4355 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0064 YpsIP31758_B0065 YpsIP31758_B0065 YpsIP31758_B0065 69197 71044 + hypothetical protein identified by glimmer%3B putative gene gene4356 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0065 YpsIP31758_B0066 YpsIP31758_B0066 YpsIP31758_B0066 71244 72476 + putative membrane protein identified by match to protein family HMM PF07690 gene gene4357 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0066 YpsIP31758_B0067 YpsIP31758_B0067 YpsIP31758_B0067 72485 73063 + putative oxidoreductase gene gene4358 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0067 YpsIP31758_B0068 YpsIP31758_B0068 YpsIP31758_B0068 74150 74806 - hypothetical protein identified by glimmer%3B putative gene gene4359 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0068 YpsIP31758_B0069 YpsIP31758_B0069 YpsIP31758_B0069 75295 75567 - hypothetical protein identified by glimmer%3B putative gene gene4360 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0069 YpsIP31758_B0070 YpsIP31758_B0070 YpsIP31758_B0070 75564 76358 - conserved hypothetical protein gene gene4361 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0070 YpsIP31758_B0071 YpsIP31758_B0071 YpsIP31758_B0071 76523 77980 - hypothetical protein identified by glimmer%3B putative gene gene4362 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0071 YpsIP31758_B0072 YpsIP31758_B0072 YpsIP31758_B0072 78329 79402 - hypothetical protein identified by glimmer%3B putative gene gene4363 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0072 YpsIP31758_B0073 YpsIP31758_B0073 YpsIP31758_B0073 82045 82290 - ChpR family protein identified by match to protein family HMM PF04014 gene gene4364 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0073 YpsIP31758_B0074 YpsIP31758_B0074 YpsIP31758_B0074 82551 83390 - conserved hypothetical protein gene gene4365 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0074 YpsIP31758_B0075 YpsIP31758_B0075 YpsIP31758_B0075 83794 84912 - putative conjugal transfer protein TraE gene gene4366 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0075 YpsIP31758_B0076 YpsIP31758_B0076 YpsIP31758_B0076 86182 87726 - conserved hypothetical protein gene gene4367 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0076 YpsIP31758_B0077 YpsIP31758_B0077 YpsIP31758_B0077 88093 89100 - hypothetical protein identified by glimmer%3B putative gene gene4368 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0077 YpsIP31758_B0078 YpsIP31758_B0078 YpsIP31758_B0078 89530 89916 - conserved hypothetical protein identified by similarity to GB:CAE14944.1 gene gene4369 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0078 YpsIP31758_B0079 YpsIP31758_B0079 YpsIP31758_B0079 89918 91330 - conserved hypothetical protein gene gene4370 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0079 YpsIP31758_B0080 YpsIP31758_B0080 YpsIP31758_B0080 91343 91930 - hypothetical protein identified by glimmer%3B putative gene gene4371 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0080 YpsIP31758_B0081 YpsIP31758_B0081 YpsIP31758_B0081 92100 92549 + hypothetical protein identified by glimmer%3B putative gene gene4372 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0081 YpsIP31758_B0082 YpsIP31758_B0082 YpsIP31758_B0082 92987 93670 + conserved hypothetical protein gene gene4373 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0082 YpsIP31758_B0083 YpsIP31758_B0083 YpsIP31758_B0083 93811 94704 - hypothetical protein identified by glimmer%3B putative gene gene4374 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0083 YpsIP31758_B0084 YpsIP31758_B0084 YpsIP31758_B0084 95269 95619 - hypothetical protein identified by glimmer%3B putative gene gene4375 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0084 YpsIP31758_B0085 YpsIP31758_B0085 YpsIP31758_B0085 95833 96606 + hypothetical protein identified by glimmer%3B putative gene gene4376 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0085 YpsIP31758_B0086 YpsIP31758_B0086 YpsIP31758_B0086 97034 97675 + hypothetical protein identified by glimmer%3B putative gene gene4377 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0086 YpsIP31758_B0087 YpsIP31758_B0087 YpsIP31758_B0087 97665 98189 + conserved hypothetical protein gene gene4378 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0087 YpsIP31758_B0088 YpsIP31758_B0088 YpsIP31758_B0088 98182 98637 + conserved hypothetical protein gene gene4379 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0088 YpsIP31758_B0089 YpsIP31758_B0089 YpsIP31758_B0089 98637 99281 + hypothetical protein identified by glimmer%3B putative gene gene4380 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0089 YpsIP31758_B0090 YpsIP31758_B0090 YpsIP31758_B0090 100218 101069 - putative endonuclease identified by match to protein family HMM PF01223 gene gene4381 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0090 YpsIP31758_B0091 YpsIP31758_B0091 YpsIP31758_B0091 101361 102191 - hypothetical protein identified by glimmer%3B putative gene gene4382 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0091 YpsIP31758_B0092 YpsIP31758_B0092 YpsIP31758_B0092 102713 103843 + putative integrase family protein identified by match to protein family HMM PF00589 gene gene4383 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0092 YpsIP31758_B0093 YpsIP31758_B0093 YpsIP31758_B0093 104452 105609 - DNA-binding protein homolog gene gene4384 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0093 YpsIP31758_B0094 YpsIP31758_B0094 YpsIP31758_B0094 106241 106351 - hypothetical protein identified by glimmer%3B putative gene gene4385 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0094 YpsIP31758_B0095 YpsIP31758_B0095 YpsIP31758_B0095 106389 107120 + hypothetical protein identified by glimmer%3B putative gene gene4386 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0095 YpsIP31758_B0096 YpsIP31758_B0096 YpsIP31758_B0096 107209 107700 + hypothetical protein identified by glimmer%3B putative gene gene4387 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0096 YpsIP31758_B0097 YpsIP31758_B0097 YpsIP31758_B0097 107749 110271 - type IV secretion system protein DotA homolog identified by similarity to GB:AAP75486.1 gene gene4388 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0097 YpsIP31758_B0098 YpsIP31758_B0098 YpsIP31758_B0098 110541 111107 + hypothetical protein identified by glimmer%3B putative gene gene4389 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0098 YpsIP31758_B0099 YpsIP31758_B0099 YpsIP31758_B0099 111501 112385 - putative lipoprotein gene gene4390 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0099 YpsIP31758_B0100 YpsIP31758_B0100 YpsIP31758_B0100 112397 112963 - hypothetical protein identified by glimmer%3B putative gene gene4391 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0100 YpsIP31758_B0101 YpsIP31758_B0101 YpsIP31758_B0101 112978 113796 - hypothetical protein identified by glimmer%3B putative gene gene4392 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0101 YpsIP31758_B0102 YpsIP31758_B0102 YpsIP31758_B0102 114028 114951 - hypothetical protein identified by glimmer%3B putative gene gene4393 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0102 YpsIP31758_B0103 YpsIP31758_B0103 YpsIP31758_B0103 114952 115911 - hypothetical protein identified by glimmer%3B putative gene gene4394 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0103 YpsIP31758_B0104 YpsIP31758_B0104 YpsIP31758_B0104 115982 117295 - type IV secretion system protein IcmP/DotM similar to Legionella pneumophila icm/dot system%3B identified by similarity to GB:AAS92046.1 gene gene4395 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0104 YpsIP31758_B0105 YpsIP31758_B0105 YpsIP31758_B0105 117309 117902 - hypothetical protein identified by glimmer%3B putative gene gene4396 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0105 YpsIP31758_B0106 YpsIP31758_B0106 YpsIP31758_B0106 118095 119045 - plasmid stability protein StbA family protein gene gene4397 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0106 YpsIP31758_B0107 YpsIP31758_B0107 YpsIP31758_B0107 120219 120518 - conserved hypothetical protein similar to Yersinia enterocolitica plasmid pYVe8081 hypothetical protein%2C GenBank Accession Number AF336309.1 gene gene4398 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0107 YpsIP31758_B0108 YpsIP31758_B0108 YpsIP31758_B0108 120524 121153 - conserved hypothetical protein identified by similarity to GB:AAN37569.1 gene gene4399 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0108 YpsIP31758_B0109 YpsIP31758_B0109 YpsIP31758_B0109 121503 121673 - hypothetical protein identified by glimmer%3B putative gene gene4400 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0109 YpsIP31758_B0110 YpsIP31758_B0110 YpsIP31758_B0110 121779 122942 - type IV secretion system protein DotB identified by similarity to GB:AAC38181.1%3B match to protein family HMM PF00437 gene gene4401 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0110 YpsIP31758_B0111 YpsIP31758_B0111 YpsIP31758_B0111 122942 123790 - putative type IV secretion system protein DotC identified by similarity to GB:AAC38180.1 gene gene4402 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0111 YpsIP31758_B0112 YpsIP31758_B0112 YpsIP31758_B0112 123805 124260 - putative lipoprotein identified by similarity to GB:AAO91139.1 gene gene4403 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0112 YpsIP31758_B0113 YpsIP31758_B0113 YpsIP31758_B0113 125182 126216 + hypothetical protein identified by glimmer%3B putative gene gene4404 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0113 YpsIP31758_B0114 YpsIP31758_B0114 YpsIP31758_B0114 126571 127365 + putative type IV secretion system protein IcmL/DotI gene gene4405 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0114 YpsIP31758_B0115 YpsIP31758_B0115 YpsIP31758_B0115 127367 128452 + putative type IV secretion system protein IcmK/DotH gene gene4406 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0115 YpsIP31758_B0116 YpsIP31758_B0116 YpsIP31758_B0116 128505 129893 + putative type IV secretion system protein IcmE/DotG gene gene4407 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0116 YpsIP31758_B0117 YpsIP31758_B0117 YpsIP31758_B0117 129904 130590 + putative type IV secretion system protein IcmG/DotF gene gene4408 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0117 YpsIP31758_B0118 YpsIP31758_B0118 YpsIP31758_B0118 130601 131182 + putative type IV secretion system protein IcmC/DotIE gene gene4409 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0118 YpsIP31758_B0119 YpsIP31758_B0119 YpsIP31758_B0119 131682 132401 + putative type IV secretion system protein IcmJ/DotN identified by match to protein family HMM PF01844 gene gene4410 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0119 YpsIP31758_B0120 YpsIP31758_B0120 YpsIP31758_B0120 132414 133607 + hypothetical protein identified by glimmer%3B putative gene gene4411 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0120 YpsIP31758_B0121 YpsIP31758_B0121 YpsIP31758_B0121 133805 136900 + putative type IV secretion system protein IcmB/DotO gene gene4412 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0121 YpsIP31758_B0122 YpsIP31758_B0122 YpsIP31758_B0122 136944 139748 + putative type IV secretion system protein IcmO/DotL gene gene4413 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0122 YpsIP31758_B0123 YpsIP31758_B0123 YpsIP31758_B0123 139846 140271 + DNA-binding protein H-NS identified by match to protein family HMM PF00816 gene gene4414 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0123 YpsIP31758_B0124 YpsIP31758_B0124 YpsIP31758_B0124 140366 140995 + hypothetical protein identified by glimmer%3B putative gene gene4415 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0124 YpsIP31758_B0125 YpsIP31758_B0125 YpsIP31758_B0125 141048 141527 + putative conjugal transfer protein TrbN identified by match to protein family HMM PF01464 gene gene4416 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0125 YpsIP31758_B0126 YpsIP31758_B0126 YpsIP31758_B0126 141546 142061 + single-strand binding protein family protein identified by match to protein family HMM PF00436 gene gene4417 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0126 YpsIP31758_B0127 YpsIP31758_B0127 YpsIP31758_B0127 142138 142401 + site-specific recombinase%2C resolvase family%2C truncation gene gene4418 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0127 YpsIP31758_B0128 YpsIP31758_B0128 YpsIP31758_B0128 143153 143992 + hypothetical protein identified by glimmer%3B putative gene gene4419 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0128 YpsIP31758_B0129 YpsIP31758_B0129 YpsIP31758_B0129 144749 145591 + conserved hypothetical protein identified by match to protein family HMM PF04221 gene gene4420 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0129 YpsIP31758_B0130 YpsIP31758_B0130 YpsIP31758_B0130 145705 145857 + hypothetical protein identified by glimmer%3B putative gene gene4421 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0130 YpsIP31758_B0131 YpsIP31758_B0131 YpsIP31758_B0131 146089 146232 + hypothetical protein identified by glimmer%3B putative gene gene4422 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0131 YpsIP31758_B0132 YpsIP31758_B0132 YpsIP31758_B0132 146606 146995 + hypothetical protein identified by glimmer%3B putative gene gene4423 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0132 YpsIP31758_B0133 YpsIP31758_B0133 YpsIP31758_B0133 147016 147396 + hypothetical protein identified by glimmer%3B putative gene gene4424 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0133 YpsIP31758_B0134 YpsIP31758_B0134 YpsIP31758_B0134 147539 147979 - conserved hypothetical protein gene gene4425 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0134 YpsIP31758_B0135 YpsIP31758_B0135 YpsIP31758_B0135 149279 149560 + conserved hypothetical protein gene gene4426 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0135 YpsIP31758_B0136 YpsIP31758_B0136 YpsIP31758_B0136 150687 151715 + plasmid replication protein identified by match to protein family HMM PF01051 gene gene4427 http://www.ncbi.nlm.nih.gov/gene/?term=YpsIP31758_B0136