locus-tag class description YPTB0001 PF00258 Flavodoxin YPTB0002 PF01037 Lrp/AsnC ligand binding domain YPTB0003 PF03590 Aspartate-ammonia ligase YPTB0004 PF05762 VWA domain containing CoxE-like protein YPTB0005 PF07728 AAA domain (dynein-related subfamily) YPTB0005 PF17868 AAA lid domain YPTB0005 PF12592 Protein of unknown function (DUF3763) YPTB0006 PF02705 K+ potassium transporter YPTB0007 PF05025 RbsD / FucU transport protein family YPTB0008 PF00294 pfkB family carbohydrate kinase YPTB0010 PF07690 Major Facilitator Superfamily YPTB0011 PF00392 Bacterial regulatory proteins, gntR family YPTB0011 PF07729 FCD domain YPTB0012 PF00872 Transposase, Mutator family YPTB0013 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPTB0015 PF06288 Protein of unknown function (DUF1040) YPTB0016 PF01636 Phosphotransferase enzyme family YPTB0017 PF01323 DSBA-like thioredoxin domain YPTB0018 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPTB0018 PF01612 3'-5' exonuclease YPTB0018 PF00476 DNA polymerase family A YPTB0018 PF01367 5'-3' exonuclease, C-terminal SAM fold YPTB0019 PF01926 50S ribosome-binding GTPase YPTB0020 PF04220 Der GTPase activator (YihI) YPTB0021 PF06969 HemN C-terminal domain YPTB0021 PF04055 Radical SAM superfamily YPTB0022 PF02954 Bacterial regulatory protein, Fis family YPTB0022 PF00158 Sigma-54 interaction domain YPTB0022 PF00072 Response regulator receiver domain YPTB0023 PF00989 PAS fold YPTB0023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB0023 PF00512 His Kinase A (phospho-acceptor) domain YPTB0024 PF03951 Glutamine synthetase, beta-Grasp domain YPTB0024 PF00120 Glutamine synthetase, catalytic domain YPTB0026 PF13419 Haloacid dehalogenase-like hydrolase YPTB0027 PF03631 Virulence factor BrkB YPTB0028 PF02580 D-Tyr-tRNA(Tyr) deacylase YPTB0029 PF09500 Putative thioesterase (yiiD_Cterm) YPTB0029 PF00583 Acetyltransferase (GNAT) family YPTB0030 PF05170 AsmA family YPTB0031 PF00860 Permease family YPTB0032 PF03616 Sodium/glutamate symporter YPTB0033 PF00270 DEAD/DEAH box helicase YPTB0033 PF00271 Helicase conserved C-terminal domain YPTB0033 PF17191 RecG wedge domain YPTB0034 PF00588 SpoU rRNA Methylase family YPTB0034 PF12105 SpoU, rRNA methylase, C-terminal YPTB0035 PF02824 TGS domain YPTB0035 PF04607 Region found in RelA / SpoT proteins YPTB0035 PF13291 ACT domain YPTB0036 PF01192 RNA polymerase Rpb6 YPTB0037 PF00625 Guanylate kinase YPTB0038 PF01653 NAD-dependent DNA ligase adenylation domain YPTB0038 PF03120 NAD-dependent DNA ligase OB-fold domain YPTB0039 PF03458 UPF0126 domain YPTB0040 PF08340 Domain of unknown function (DUF1732) YPTB0040 PF03755 YicC-like family, N-terminal region YPTB0041 PF03725 3' exoribonuclease family, domain 2 YPTB0041 PF01138 3' exoribonuclease family, domain 1 YPTB0042 PF00156 Phosphoribosyl transferase domain YPTB0043 PF00440 Bacterial regulatory proteins, tetR family YPTB0044 PF00692 dUTPase YPTB0045 PF02441 Flavoprotein YPTB0045 PF04127 DNA / pantothenate metabolism flavoprotein YPTB0046 PF04002 RadC-like JAB domain YPTB0047 PF00830 Ribosomal L28 family YPTB0048 PF00471 Ribosomal protein L33 YPTB0049 PF06827 Zinc finger found in FPG and IleRS YPTB0049 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPTB0049 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPTB0050 PF01467 Cytidylyltransferase-like YPTB0051 PF00535 Glycosyl transferase family 2 YPTB0052 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPTB0053 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTB0054 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTB0055 PF01370 NAD dependent epimerase/dehydratase family YPTB0056 PF00155 Aminotransferase class I and II YPTB0057 PF08240 Alcohol dehydrogenase GroES-like domain YPTB0057 PF00107 Zinc-binding dehydrogenase YPTB0058 PF04748 Divergent polysaccharide deacetylase YPTB0059 PF01551 Peptidase family M23 YPTB0060 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPTB0060 PF01676 Metalloenzyme superfamily YPTB0061 PF00581 Rhodanese-like domain YPTB0062 PF00462 Glutaredoxin YPTB0063 PF02556 Preprotein translocase subunit SecB YPTB0064 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPTB0064 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPTB0066 PF06426 Serine acetyltransferase, N-terminal YPTB0066 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB0067 PF00588 SpoU rRNA Methylase family YPTB0068 PF12833 Helix-turn-helix domain YPTB0068 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTB0068 PF02805 Metal binding domain of Ada YPTB0068 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPTB0069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB0069 PF00672 HAMP domain YPTB0069 PF00512 His Kinase A (phospho-acceptor) domain YPTB0069 PF16527 Two-component sensor protein CpxA, periplasmic domain YPTB0070 PF00072 Response regulator receiver domain YPTB0070 PF00486 Transcriptional regulatory protein, C terminal YPTB0071 PF07813 LTXXQ motif family protein YPTB0072 PF04754 Putative transposase, YhgA-like YPTB0073 PF16916 Dimerisation domain of Zinc Transporter YPTB0073 PF01545 Cation efflux family YPTB0074 PF00365 Phosphofructokinase YPTB0077 PF00939 Sodium:sulfate symporter transmembrane region YPTB0078 PF03737 Aldolase/RraA YPTB0079 PF02585 GlcNAc-PI de-N-acetylase YPTB0080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0080 PF03466 LysR substrate binding domain YPTB0081 PF00121 Triosephosphate isomerase YPTB0082 PF07305 Protein of unknown function (DUF1454) YPTB0083 PF05656 Protein of unknown function (DUF805) YPTB0084 PF00175 Oxidoreductase NAD-binding domain YPTB0084 PF00970 Oxidoreductase FAD-binding domain YPTB0085 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPTB0086 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB0086 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB0087 PF00230 Major intrinsic protein YPTB0089 PF06005 Cell division protein ZapB YPTB0090 PF00664 ABC transporter transmembrane region YPTB0090 PF03412 Peptidase C39 family YPTB0090 PF00005 ABC transporter YPTB0091 PF00529 HlyD membrane-fusion protein of T1SS YPTB0091 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB0095 PF03737 Aldolase/RraA YPTB0096 PF01040 UbiA prenyltransferase family YPTB0097 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB0097 PF07724 AAA domain (Cdc48 subfamily) YPTB0097 PF00004 ATPase family associated with various cellular activities (AAA) YPTB0098 PF00227 Proteasome subunit YPTB0099 PF05036 Sporulation related domain YPTB0100 PF00356 Bacterial regulatory proteins, lacI family YPTB0101 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPTB0101 PF18074 Primosomal protein N C-terminal domain YPTB0101 PF17764 3′ DNA-binding domain (3′BD) YPTB0101 PF00271 Helicase conserved C-terminal domain YPTB0101 PF00270 DEAD/DEAH box helicase YPTB0102 PF01197 Ribosomal protein L31 YPTB0103 PF05360 yiaA/B two helix domain YPTB0104 PF01340 Met Apo-repressor, MetJ YPTB0105 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTB0106 PF03447 Homoserine dehydrogenase, NAD binding domain YPTB0106 PF00696 Amino acid kinase family YPTB0106 PF00742 Homoserine dehydrogenase YPTB0107 PF02219 Methylenetetrahydrofolate reductase YPTB0108 PF00311 Phosphoenolpyruvate carboxylase YPTB0109 PF01546 Peptidase family M20/M25/M40 YPTB0109 PF07687 Peptidase dimerisation domain YPTB0110 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTB0110 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTB0111 PF00696 Amino acid kinase family YPTB0112 PF14698 Argininosuccinate lyase C-terminal YPTB0112 PF00206 Lyase YPTB0113 PF07715 TonB-dependent Receptor Plug Domain YPTB0113 PF00593 TonB dependent receptor YPTB0115 PF00664 ABC transporter transmembrane region YPTB0115 PF00005 ABC transporter YPTB0116 PF00529 HlyD membrane-fusion protein of T1SS YPTB0117 PF03544 Gram-negative bacterial TonB protein C-terminal YPTB0118 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB0118 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB0119 PF08534 Redoxin YPTB0119 PF00462 Glutaredoxin YPTB0120 PF03466 LysR substrate binding domain YPTB0120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0121 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB0121 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB0122 PF00440 Bacterial regulatory proteins, tetR family YPTB0123 PF07226 Protein of unknown function (DUF1422) YPTB0124 PF05958 tRNA (Uracil-5-)-methyltransferase YPTB0125 PF00593 TonB dependent receptor YPTB0125 PF07715 TonB-dependent Receptor Plug Domain YPTB0126 PF01177 Asp/Glu/Hydantoin racemase YPTB0127 PF13407 Periplasmic binding protein domain YPTB0128 PF00005 ABC transporter YPTB0129 PF02653 Branched-chain amino acid transport system / permease component YPTB0130 PF02653 Branched-chain amino acid transport system / permease component YPTB0131 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0131 PF03466 LysR substrate binding domain YPTB0132 PF04219 Protein of unknown function, DUF YPTB0133 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPTB0133 PF01078 Magnesium chelatase, subunit ChlI YPTB0134 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB0134 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB0134 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB0136 PF01063 Amino-transferase class IV YPTB0137 PF00920 Dehydratase family YPTB0138 PF00585 C-terminal regulatory domain of Threonine dehydratase YPTB0138 PF00291 Pyridoxal-phosphate dependent enzyme YPTB0144 PF03466 LysR substrate binding domain YPTB0144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPTB0145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPTB0149 PF01320 Colicin immunity protein / pyocin immunity protein YPTB0150 PF06958 S-type Pyocin YPTB0151 PF01320 Colicin immunity protein / pyocin immunity protein YPTB0152 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 YPTB0152 PF03515 Colicin-like bacteriocin tRNase domain YPTB0153 PF01320 Colicin immunity protein / pyocin immunity protein YPTB0156 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB0156 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB0158 PF13954 PapC N-terminal domain YPTB0158 PF00577 Outer membrane usher protein YPTB0158 PF13953 PapC C-terminal domain YPTB0159 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB0159 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB0163 PF00580 UvrD/REP helicase N-terminal domain YPTB0163 PF13361 UvrD-like helicase C-terminal domain YPTB0164 PF02541 Ppx/GppA phosphatase family YPTB0165 PF00270 DEAD/DEAH box helicase YPTB0165 PF00271 Helicase conserved C-terminal domain YPTB0166 PF00085 Thioredoxin YPTB0167 PF07498 Rho termination factor, N-terminal domain YPTB0167 PF07497 Rho termination factor, RNA-binding domain YPTB0167 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB0168 PF00953 Glycosyl transferase family 4 YPTB0169 PF02706 Chain length determinant protein YPTB0170 PF02350 UDP-N-acetylglucosamine 2-epimerase YPTB0171 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPTB0171 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPTB0171 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPTB0172 PF16363 GDP-mannose 4,6 dehydratase YPTB0173 PF00483 Nucleotidyl transferase YPTB0175 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTB0176 PF01943 Polysaccharide biosynthesis protein YPTB0177 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPTB0178 PF06899 WzyE protein, O-antigen assembly polymerase YPTB0179 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPTB0180 PF00324 Amino acid permease YPTB0181 PF07719 Tetratricopeptide repeat YPTB0181 PF07219 HemY protein N-terminus YPTB0182 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPTB0183 PF02602 Uroporphyrinogen-III synthase HemD YPTB0184 PF03900 Porphobilinogen deaminase, C-terminal domain YPTB0184 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPTB0185 PF12633 Adenylate cyclase NT domain YPTB0185 PF01295 Adenylate cyclase, class-I YPTB0186 PF00872 Transposase, Mutator family YPTB0188 PF01491 Frataxin-like domain YPTB0189 PF13627 Prokaryotic lipoprotein-attachment site YPTB0190 PF01678 Diaminopimelate epimerase YPTB0191 PF04340 Protein of unknown function, DUF484 YPTB0192 PF00589 Phage integrase family YPTB0192 PF02899 Phage integrase, N-terminal SAM-like domain YPTB0193 PF13419 Haloacid dehalogenase-like hydrolase YPTB0194 PF13361 UvrD-like helicase C-terminal domain YPTB0194 PF00580 UvrD/REP helicase N-terminal domain YPTB0197 PF09370 Phosphoenolpyruvate hydrolase-like YPTB0198 PF01544 CorA-like Mg2+ transporter protein YPTB0199 PF00892 EamA-like transporter family YPTB0200 PF03061 Thioesterase superfamily YPTB0201 PF02253 Phospholipase A1 YPTB0202 PF09382 RQC domain YPTB0202 PF16124 RecQ zinc-binding YPTB0202 PF00570 HRDC domain YPTB0202 PF00271 Helicase conserved C-terminal domain YPTB0202 PF00270 DEAD/DEAH box helicase YPTB0203 PF01810 LysE type translocator YPTB0204 PF01810 LysE type translocator YPTB0205 PF12146 Serine aminopeptidase, S33 YPTB0208 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB0209 PF04324 BFD-like [2Fe-2S] binding domain YPTB0209 PF01266 FAD dependent oxidoreductase YPTB0210 PF00890 FAD binding domain YPTB0211 PF13183 4Fe-4S dicluster domain YPTB0211 PF02754 Cysteine-rich domain YPTB0212 PF08786 DcrB YPTB0213 PF02592 Putative vitamin uptake transporter YPTB0214 PF01206 Sulfurtransferase TusA YPTB0215 PF00403 Heavy-metal-associated domain YPTB0216 PF07947 YhhN family YPTB0219 PF06611 Protein of unknown function (DUF1145) YPTB0221 PF02881 SRP54-type protein, helical bundle domain YPTB0221 PF02881 SRP54-type protein, helical bundle domain YPTB0221 PF00448 SRP54-type protein, GTPase domain YPTB0221 PF00448 SRP54-type protein, GTPase domain YPTB0222 PF00005 ABC transporter YPTB0223 PF18075 FtsX extracellular domain YPTB0223 PF02687 FtsX-like permease family YPTB0224 PF00140 Sigma-70 factor, region 1.2 YPTB0224 PF04545 Sigma-70, region 4 YPTB0224 PF04542 Sigma-70 region 2 YPTB0225 PF12568 Acetyltransferase (GNAT) domain, PanZ YPTB0226 PF13458 Periplasmic binding protein YPTB0227 PF02653 Branched-chain amino acid transport system / permease component YPTB0228 PF02653 Branched-chain amino acid transport system / permease component YPTB0228 PF11862 Domain of unknown function (DUF3382) YPTB0229 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPTB0229 PF00005 ABC transporter YPTB0230 PF00005 ABC transporter YPTB0238 PF13416 Bacterial extracellular solute-binding protein YPTB0239 PF00528 Binding-protein-dependent transport system inner membrane component YPTB0240 PF00528 Binding-protein-dependent transport system inner membrane component YPTB0241 PF17912 MalK OB fold domain YPTB0241 PF00005 ABC transporter YPTB0242 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB0243 PF03547 Membrane transport protein YPTB0246 PF00892 EamA-like transporter family YPTB0247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0247 PF03466 LysR substrate binding domain YPTB0248 PF01717 Cobalamin-independent synthase, Catalytic domain YPTB0248 PF08267 Cobalamin-independent synthase, N-terminal domain YPTB0249 PF01738 Dienelactone hydrolase family YPTB0250 PF01048 Phosphorylase superfamily YPTB0252 PF13722 5TM C-terminal transporter carbon starvation CstA YPTB0252 PF02554 Carbon starvation protein CstA YPTB0253 PF09335 SNARE associated Golgi protein YPTB0254 PF02646 RmuC family YPTB0255 PF01209 ubiE/COQ5 methyltransferase family YPTB0256 PF02036 SCP-2 sterol transfer family YPTB0257 PF03109 ABC1 family YPTB0258 PF02416 mttA/Hcf106 family YPTB0260 PF00902 Sec-independent protein translocase protein (TatC) YPTB0261 PF01026 TatD related DNase YPTB0262 PF00490 Delta-aminolevulinic acid dehydratase YPTB0263 PF02357 Transcription termination factor nusG YPTB0264 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPTB0265 PF00175 Oxidoreductase NAD-binding domain YPTB0265 PF00970 Oxidoreductase FAD-binding domain YPTB0266 PF02803 Thiolase, C-terminal domain YPTB0266 PF00108 Thiolase, N-terminal domain YPTB0267 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPTB0267 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPTB0267 PF00378 Enoyl-CoA hydratase/isomerase YPTB0268 PF00557 Metallopeptidase family M24 YPTB0269 PF09186 Domain of unknown function (DUF1949) YPTB0269 PF01205 Uncharacterized protein family UPF0029 YPTB0270 PF02386 Cation transport protein YPTB0271 PF12724 Flavodoxin domain YPTB0272 PF01565 FAD binding domain YPTB0272 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPTB0273 PF02237 Biotin protein ligase C terminal domain YPTB0273 PF03099 Biotin/lipoate A/B protein ligase family YPTB0273 PF08279 HTH domain YPTB0274 PF00485 Phosphoribulokinase / Uridine kinase family YPTB0275 PF13673 Acetyltransferase (GNAT) domain YPTB0276 PF03143 Elongation factor Tu C-terminal domain YPTB0276 PF03144 Elongation factor Tu domain 2 YPTB0276 PF00009 Elongation factor Tu GTP binding domain YPTB0277 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPTB0278 PF02357 Transcription termination factor nusG YPTB0278 PF00467 KOW motif YPTB0279 PF03946 Ribosomal protein L11, N-terminal domain YPTB0279 PF00298 Ribosomal protein L11, RNA binding domain YPTB0280 PF00687 Ribosomal protein L1p/L10e family YPTB0281 PF00466 Ribosomal protein L10 YPTB0282 PF00542 Ribosomal protein L7/L12 C-terminal domain YPTB0282 PF16320 Ribosomal protein L7/L12 dimerisation domain YPTB0283 PF04560 RNA polymerase Rpb2, domain 7 YPTB0283 PF00562 RNA polymerase Rpb2, domain 6 YPTB0283 PF10385 RNA polymerase beta subunit external 1 domain YPTB0283 PF04565 RNA polymerase Rpb2, domain 3 YPTB0283 PF04561 RNA polymerase Rpb2, domain 2 YPTB0283 PF04563 RNA polymerase beta subunit YPTB0284 PF04997 RNA polymerase Rpb1, domain 1 YPTB0284 PF00623 RNA polymerase Rpb1, domain 2 YPTB0284 PF04983 RNA polymerase Rpb1, domain 3 YPTB0284 PF04998 RNA polymerase Rpb1, domain 5 YPTB0284 PF05000 RNA polymerase Rpb1, domain 4 YPTB0285 PF06968 Biotin and Thiamin Synthesis associated domain YPTB0285 PF04055 Radical SAM superfamily YPTB0286 PF05690 Thiazole biosynthesis protein ThiG YPTB0288 PF00899 ThiF family YPTB0289 PF02581 Thiamine monophosphate synthase YPTB0290 PF13667 ThiC-associated domain YPTB0290 PF01964 Radical SAM ThiC family YPTB0291 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPTB0292 PF09297 NADH pyrophosphatase zinc ribbon domain YPTB0292 PF00293 NUDIX domain YPTB0294 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPTB0295 PF04493 Endonuclease V YPTB0296 PF04222 Protein of unknown function (DUF416) YPTB0297 PF00216 Bacterial DNA-binding protein YPTB0298 PF07356 Protein of unknown function (DUF1481) YPTB0299 PF02844 Phosphoribosylglycinamide synthetase, N domain YPTB0299 PF02843 Phosphoribosylglycinamide synthetase, C domain YPTB0299 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPTB0300 PF01808 AICARFT/IMPCHase bienzyme YPTB0300 PF02142 MGS-like domain YPTB0301 PF01527 Transposase YPTB0302 PF13683 Integrase core domain YPTB0302 PF13276 HTH-like domain YPTB0303 PF01695 IstB-like ATP binding protein YPTB0304 PF00665 Integrase core domain YPTB0304 PF02796 Helix-turn-helix domain of resolvase YPTB0306 PF00474 Sodium:solute symporter family YPTB0307 PF04341 Protein of unknown function, DUF485 YPTB0308 PF16177 Acetyl-coenzyme A synthetase N-terminus YPTB0308 PF00501 AMP-binding enzyme YPTB0308 PF13193 AMP-binding enzyme C-terminal domain YPTB0309 PF00375 Sodium:dicarboxylate symporter family YPTB0310 PF00196 Bacterial regulatory proteins, luxR family YPTB0310 PF00072 Response regulator receiver domain YPTB0311 PF00672 HAMP domain YPTB0311 PF00072 Response regulator receiver domain YPTB0311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB0311 PF00512 His Kinase A (phospho-acceptor) domain YPTB0311 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPTB0311 PF01627 Hpt domain YPTB0315 PF14525 AraC-binding-like domain YPTB0315 PF12833 Helix-turn-helix domain YPTB0319 PF01514 Secretory protein of YscJ/FliF family YPTB0322 PF00771 FHIPEP family YPTB0323 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB0323 PF18269 T3SS EscN ATPase C-terminal domain YPTB0326 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTB0327 PF00813 FliP family YPTB0328 PF01313 Bacterial export proteins, family 3 YPTB0329 PF01311 Bacterial export proteins, family 1 YPTB0330 PF01312 FlhB HrpN YscU SpaS Family YPTB0331 PF04143 Sulphur transport YPTB0332 PF01206 Sulfurtransferase TusA YPTB0333 PF03466 LysR substrate binding domain YPTB0333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0334 PF03222 Tryptophan/tyrosine permease family YPTB0335 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTB0336 PF00005 ABC transporter YPTB0337 PF01032 FecCD transport family YPTB0338 PF01497 Periplasmic binding protein YPTB0339 PF05171 Haemin-degrading HemS.ChuX domain YPTB0340 PF00593 TonB dependent receptor YPTB0340 PF07715 TonB-dependent Receptor Plug Domain YPTB0341 PF10636 Hemin uptake protein hemP YPTB0342 PF13460 NAD(P)H-binding YPTB0343 PF06228 Haem utilisation ChuX/HutX YPTB0344 PF04055 Radical SAM superfamily YPTB0348 PF11202 Phosphoribosyl transferase (PRTase) YPTB0348 PF15608 PELOTA RNA binding domain YPTB0352 PF02342 TerD domain YPTB0353 PF02342 TerD domain YPTB0354 PF05099 Tellurite resistance protein TerB YPTB0355 PF03741 Integral membrane protein TerC family YPTB0356 PF02342 TerD domain YPTB0357 PF02342 TerD domain YPTB0359 PF00577 Outer membrane usher protein YPTB0359 PF13954 PapC N-terminal domain YPTB0359 PF13953 PapC C-terminal domain YPTB0360 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB0364 PF08031 Berberine and berberine like YPTB0364 PF01565 FAD binding domain YPTB0365 PF12951 Passenger-associated-transport-repeat YPTB0366 PF04345 Chorismate lyase YPTB0367 PF01040 UbiA prenyltransferase family YPTB0368 PF01553 Acyltransferase YPTB0369 PF01219 Prokaryotic diacylglycerol kinase YPTB0370 PF01726 LexA DNA binding domain YPTB0370 PF00717 Peptidase S24-like YPTB0371 PF01475 Ferric uptake regulator family YPTB0372 PF01207 Dihydrouridine synthase (Dus) YPTB0373 PF09583 Phage shock protein G (Phageshock_PspG) YPTB0374 PF00107 Zinc-binding dehydrogenase YPTB0374 PF08240 Alcohol dehydrogenase GroES-like domain YPTB0375 PF00772 DnaB-like helicase N terminal domain YPTB0375 PF03796 DnaB-like helicase C terminal domain YPTB0376 PF00842 Alanine racemase, C-terminal domain YPTB0376 PF01168 Alanine racemase, N-terminal domain YPTB0377 PF00155 Aminotransferase class I and II YPTB0378 PF04237 YjbR YPTB0379 PF17760 UvrA interaction domain YPTB0379 PF17755 UvrA DNA-binding domain YPTB0379 PF00005 ABC transporter YPTB0380 PF00436 Single-strand binding protein family YPTB0381 PF05336 L-rhamnose mutarotase YPTB0382 PF00465 Iron-containing alcohol dehydrogenase YPTB0383 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB0384 PF06134 L-rhamnose isomerase (RhaA) YPTB0385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB0385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB0386 PF02311 AraC-like ligand binding domain YPTB0386 PF12833 Helix-turn-helix domain YPTB0387 PF12833 Helix-turn-helix domain YPTB0387 PF02311 AraC-like ligand binding domain YPTB0388 PF06379 L-rhamnose-proton symport protein (RhaT) YPTB0396 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB0396 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPTB0396 PF13247 4Fe-4S dicluster domain YPTB0397 PF13247 4Fe-4S dicluster domain YPTB0397 PF12800 4Fe-4S binding domain YPTB0398 PF01568 Molydopterin dinucleotide binding domain YPTB0398 PF00384 Molybdopterin oxidoreductase YPTB0398 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB0399 PF02683 Cytochrome C biogenesis protein transmembrane region YPTB0399 PF11412 Disulphide bond corrector protein DsbC YPTB0400 PF03091 CutA1 divalent ion tolerance protein YPTB0401 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPTB0402 PF00206 Lyase YPTB0402 PF10415 Fumarase C C-terminus YPTB0403 PF04186 FxsA cytoplasmic membrane protein YPTB0404 PF00166 Chaperonin 10 Kd subunit YPTB0405 PF00118 TCP-1/cpn60 chaperonin family YPTB0406 PF13698 Domain of unknown function (DUF4156) YPTB0407 PF04055 Radical SAM superfamily YPTB0408 PF09285 Elongation factor P, C-terminal YPTB0408 PF08207 Elongation factor P (EF-P) KOW-like domain YPTB0408 PF01132 Elongation factor P (EF-P) OB domain YPTB0409 PF00893 Small Multidrug Resistance protein YPTB0410 PF02313 Fumarate reductase subunit D YPTB0411 PF02300 Fumarate reductase subunit C YPTB0412 PF13183 4Fe-4S dicluster domain YPTB0412 PF13085 2Fe-2S iron-sulfur cluster binding domain YPTB0413 PF02910 Fumarate reductase flavoprotein C-term YPTB0413 PF00890 FAD binding domain YPTB0414 PF00152 tRNA synthetases class II (D, K and N) YPTB0415 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPTB0415 PF12795 Mechanosensitive ion channel porin domain YPTB0415 PF00924 Mechanosensitive ion channel YPTB0416 PF02666 Phosphatidylserine decarboxylase YPTB0417 PF03193 RsgA GTPase YPTB0418 PF00929 Exonuclease YPTB0419 PF08331 Domain of unknown function (DUF1730) YPTB0420 PF01256 Carbohydrate kinase YPTB0420 PF03853 YjeF-related protein N-terminus YPTB0421 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPTB0422 PF01520 N-acetylmuramoyl-L-alanine amidase YPTB0423 PF08676 MutL C terminal dimerisation domain YPTB0423 PF01119 DNA mismatch repair protein, C-terminal domain YPTB0425 PF17209 Hfq protein YPTB0426 PF01926 50S ribosome-binding GTPase YPTB0426 PF13167 GTP-binding GTPase N-terminal YPTB0426 PF16360 GTP-binding GTPase Middle Region YPTB0427 PF12221 Bacterial membrane protein N terminal YPTB0427 PF01145 SPFH domain / Band 7 family YPTB0428 PF01145 SPFH domain / Band 7 family YPTB0429 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPTB0430 PF00709 Adenylosuccinate synthetase YPTB0431 PF02082 Transcriptional regulator YPTB0432 PF08461 Ribonuclease R winged-helix domain YPTB0432 PF00575 S1 RNA binding domain YPTB0432 PF00773 RNB domain YPTB0432 PF08206 Ribonuclease B OB domain YPTB0432 PF17876 Cold shock domain YPTB0433 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPTB0433 PF00588 SpoU rRNA Methylase family YPTB0434 PF18158 Adaptive response protein AidB N-terminal domain YPTB0434 PF02770 Acyl-CoA dehydrogenase, middle domain YPTB0434 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTB0435 PF07338 Protein of unknown function (DUF1471) YPTB0436 PF00326 Prolyl oligopeptidase family YPTB0438 PF01250 Ribosomal protein S6 YPTB0439 PF00436 Single-strand binding protein family YPTB0440 PF01084 Ribosomal protein S18 YPTB0441 PF01281 Ribosomal protein L9, N-terminal domain YPTB0441 PF03948 Ribosomal protein L9, C-terminal domain YPTB0443 PF08525 Opacity-associated protein A N-terminal motif YPTB0443 PF04225 Opacity-associated protein A LysM-like domain YPTB0444 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPTB0444 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB0445 PF01814 Hemerythrin HHE cation binding domain YPTB0445 PF04405 Domain of Unknown function (DUF542) YPTB0446 PF00149 Calcineurin-like phosphoesterase YPTB0446 PF02872 5'-nucleotidase, C-terminal domain YPTB0447 PF00459 Inositol monophosphatase family YPTB0448 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPTB0449 PF06526 Protein of unknown function (DUF1107) YPTB0450 PF03471 Transporter associated domain YPTB0450 PF01595 Cyclin M transmembrane N-terminal domain YPTB0450 PF00571 CBS domain YPTB0451 PF01625 Peptide methionine sulfoxide reductase YPTB0452 PF17243 POTRA domain TamA domain 1 YPTB0452 PF07244 Surface antigen variable number repeat YPTB0452 PF01103 Surface antigen YPTB0453 PF04357 TamB, inner membrane protein subunit of TAM complex YPTB0454 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPTB0455 PF00719 Inorganic pyrophosphatase YPTB0456 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPTB0457 PF08245 Mur ligase middle domain YPTB0457 PF01225 Mur ligase family, catalytic domain YPTB0457 PF02875 Mur ligase family, glutamate ligase domain YPTB0459 PF02863 Arginine repressor, C-terminal domain YPTB0459 PF01316 Arginine repressor, DNA binding domain YPTB0460 PF00056 lactate/malate dehydrogenase, NAD binding domain YPTB0460 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPTB0461 PF13693 Winged helix-turn-helix DNA-binding YPTB0463 PF00348 Polyprenyl synthetase YPTB0464 PF00829 Ribosomal prokaryotic L21 protein YPTB0465 PF01016 Ribosomal L27 protein YPTB0466 PF00892 EamA-like transporter family YPTB0467 PF01018 GTP1/OBG YPTB0467 PF01926 50S ribosome-binding GTPase YPTB0468 PF00512 His Kinase A (phospho-acceptor) domain YPTB0468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB0468 PF00672 HAMP domain YPTB0469 PF00486 Transcriptional regulatory protein, C terminal YPTB0469 PF00072 Response regulator receiver domain YPTB0470 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPTB0471 PF03449 Transcription elongation factor, N-terminal YPTB0471 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTB0472 PF01985 CRS1 / YhbY (CRM) domain YPTB0473 PF01728 FtsJ-like methyltransferase YPTB0474 PF06480 FtsH Extracellular YPTB0474 PF17862 AAA+ lid domain YPTB0474 PF00004 ATPase family associated with various cellular activities (AAA) YPTB0474 PF01434 Peptidase family M41 YPTB0475 PF00809 Pterin binding enzyme YPTB0476 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTB0476 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTB0476 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTB0476 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTB0477 PF03840 Preprotein translocase SecG subunit YPTB0478 PF17384 RimP C-terminal SH3 domain YPTB0478 PF02576 RimP N-terminal domain YPTB0479 PF08529 NusA N-terminal domain YPTB0479 PF13184 NusA-like KH domain YPTB0479 PF00575 S1 RNA binding domain YPTB0480 PF04760 Translation initiation factor IF-2, N-terminal region YPTB0480 PF00009 Elongation factor Tu GTP binding domain YPTB0480 PF03144 Elongation factor Tu domain 2 YPTB0480 PF08364 Bacterial translation initiation factor IF-2 associated region YPTB0480 PF11987 Translation-initiation factor 2 YPTB0481 PF02033 Ribosome-binding factor A YPTB0482 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPTB0482 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPTB0482 PF09157 Pseudouridine synthase II TruB, C-terminal YPTB0483 PF00312 Ribosomal protein S15 YPTB0484 PF00575 S1 RNA binding domain YPTB0484 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPTB0484 PF01138 3' exoribonuclease family, domain 1 YPTB0484 PF00013 KH domain YPTB0484 PF03725 3' exoribonuclease family, domain 2 YPTB0485 PF13181 Tetratricopeptide repeat YPTB0485 PF07719 Tetratricopeptide repeat YPTB0486 PF03880 DbpA RNA binding domain YPTB0486 PF00270 DEAD/DEAH box helicase YPTB0486 PF12343 Cold shock protein DEAD box A YPTB0486 PF00271 Helicase conserved C-terminal domain YPTB0489 PF01381 Helix-turn-helix YPTB0490 PF00296 Luciferase-like monooxygenase YPTB0491 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB0491 PF00529 HlyD membrane-fusion protein of T1SS YPTB0492 PF00873 AcrB/AcrD/AcrF family YPTB0493 PF02321 Outer membrane efflux protein YPTB0493 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTB0497 PF13508 Acetyltransferase (GNAT) domain YPTB0498 PF01541 GIY-YIG catalytic domain YPTB0501 PF13416 Bacterial extracellular solute-binding protein YPTB0503 PF00528 Binding-protein-dependent transport system inner membrane component YPTB0504 PF00005 ABC transporter YPTB0504 PF17912 MalK OB fold domain YPTB0504 PF03459 TOBE domain YPTB0507 PF13460 NAD(P)H-binding YPTB0508 PF12706 Beta-lactamase superfamily domain YPTB0510 PF07969 Amidohydrolase family YPTB0511 PF00005 ABC transporter YPTB0512 PF00005 ABC transporter YPTB0513 PF06007 Phosphonate metabolism protein PhnJ YPTB0514 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPTB0515 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPTB0516 PF06754 Phosphonate metabolism protein PhnG YPTB0517 PF07702 UTRA domain YPTB0517 PF00392 Bacterial regulatory proteins, gntR family YPTB0519 PF03477 ATP cone domain YPTB0519 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPTB0520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB0520 PF00005 ABC transporter YPTB0521 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB0521 PF00005 ABC transporter YPTB0522 PF00528 Binding-protein-dependent transport system inner membrane component YPTB0522 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB0523 PF00528 Binding-protein-dependent transport system inner membrane component YPTB0525 PF04074 YhcH/YjgK/YiaL YPTB0526 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPTB0526 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPTB0527 PF06877 Regulator of ribonuclease activity B YPTB0528 PF00583 Acetyltransferase (GNAT) family YPTB0529 PF10458 Valyl tRNA synthetase tRNA binding arm YPTB0529 PF00133 tRNA synthetases class I (I, L, M and V) YPTB0529 PF08264 Anticodon-binding domain of tRNA YPTB0530 PF04364 DNA polymerase III chi subunit, HolC YPTB0531 PF02789 Cytosol aminopeptidase family, N-terminal domain YPTB0531 PF00883 Cytosol aminopeptidase family, catalytic domain YPTB0532 PF03739 Lipopolysaccharide export system permease LptF/LptG YPTB0533 PF03739 Lipopolysaccharide export system permease LptF/LptG YPTB0535 PF12008 Type I restriction and modification enzyme - subunit R C terminal YPTB0535 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPTB0535 PF18766 SWI2/SNF2 ATPase YPTB0537 PF02384 N-6 DNA Methylase YPTB0537 PF12161 HsdM N-terminal domain YPTB0539 PF05987 Bacterial protein of unknown function (DUF898) YPTB0541 PF12833 Helix-turn-helix domain YPTB0542 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB0543 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB0545 PF00381 PTS HPr component phosphorylation site YPTB0545 PF05524 PEP-utilising enzyme, N-terminal YPTB0545 PF00391 PEP-utilising enzyme, mobile domain YPTB0545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB0545 PF02896 PEP-utilising enzyme, TIM barrel domain YPTB0546 PF10696 Protein of unknown function (DUF2501) YPTB0547 PF03992 Antibiotic biosynthesis monooxygenase YPTB0548 PF01791 DeoC/LacD family aldolase YPTB0549 PF13407 Periplasmic binding protein domain YPTB0550 PF02653 Branched-chain amino acid transport system / permease component YPTB0551 PF02653 Branched-chain amino acid transport system / permease component YPTB0552 PF00005 ABC transporter YPTB0553 PF04198 Putative sugar-binding domain YPTB0553 PF00325 Bacterial regulatory proteins, crp family YPTB0554 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB0554 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB0555 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTB0557 PF00266 Aminotransferase class-V YPTB0558 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTB0558 PF02770 Acyl-CoA dehydrogenase, middle domain YPTB0558 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPTB0561 PF00899 ThiF family YPTB0561 PF00581 Rhodanese-like domain YPTB0565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB0566 PF00873 AcrB/AcrD/AcrF family YPTB0569 PF01095 Pectinesterase YPTB0570 PF00990 Diguanylate cyclase, GGDEF domain YPTB0571 PF07256 Protein of unknown function (DUF1435) YPTB0572 PF08468 Methyltransferase small domain N-terminal YPTB0572 PF05175 Methyltransferase small domain YPTB0573 PF03603 DNA polymerase III psi subunit YPTB0574 PF00583 Acetyltransferase (GNAT) family YPTB0575 PF16658 Class II release factor RF3, C-terminal domain YPTB0575 PF03144 Elongation factor Tu domain 2 YPTB0575 PF00009 Elongation factor Tu GTP binding domain YPTB0576 PF04972 BON domain YPTB0577 PF07043 Protein of unknown function (DUF1328) YPTB0578 PF01734 Patatin-like phospholipase YPTB0579 PF01026 TatD related DNase YPTB0580 PF07662 Na+ dependent nucleoside transporter C-terminus YPTB0580 PF07670 Nucleoside recognition YPTB0580 PF01773 Na+ dependent nucleoside transporter N-terminus YPTB0581 PF01791 DeoC/LacD family aldolase YPTB0582 PF00591 Glycosyl transferase family, a/b domain YPTB0582 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPTB0582 PF02885 Glycosyl transferase family, helical bundle domain YPTB0583 PF01676 Metalloenzyme superfamily YPTB0584 PF01048 Phosphorylase superfamily YPTB0585 PF10144 Bacterial virulence factor haemolysin YPTB0586 PF18429 Domain of unknown function (DUF5609) YPTB0587 PF18073 Rubredoxin metal binding domain YPTB0588 PF13521 AAA domain YPTB0588 PF01381 Helix-turn-helix YPTB0590 PF00005 ABC transporter YPTB0590 PF12848 ABC transporter YPTB0591 PF00691 OmpA family YPTB0592 PF17152 Periplasmic sensor domain YPTB0592 PF00990 Diguanylate cyclase, GGDEF domain YPTB0594 PF00690 Cation transporter/ATPase, N-terminus YPTB0594 PF00689 Cation transporting ATPase, C-terminus YPTB0595 PF01464 Transglycosylase SLT domain YPTB0595 PF14718 Soluble lytic murein transglycosylase L domain YPTB0596 PF01371 Trp repressor protein YPTB0597 PF01931 Protein of unknown function DUF84 YPTB0598 PF00300 Histidine phosphatase superfamily (branch 1) YPTB0599 PF12833 Helix-turn-helix domain YPTB0599 PF06445 GyrI-like small molecule binding domain YPTB0600 PF05981 CreA protein YPTB0601 PF00072 Response regulator receiver domain YPTB0601 PF00486 Transcriptional regulatory protein, C terminal YPTB0602 PF00742 Homoserine dehydrogenase YPTB0602 PF01842 ACT domain YPTB0602 PF00696 Amino acid kinase family YPTB0602 PF13840 ACT domain YPTB0602 PF03447 Homoserine dehydrogenase, NAD binding domain YPTB0603 PF08544 GHMP kinases C terminal YPTB0603 PF00288 GHMP kinases N terminal domain YPTB0604 PF14821 Threonine synthase N terminus YPTB0604 PF00291 Pyridoxal-phosphate dependent enzyme YPTB0605 PF03883 Peroxide stress protein YaaA YPTB0606 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPTB0607 PF00994 Probable molybdopterin binding domain YPTB0608 PF07690 Major Facilitator Superfamily YPTB0610 PF01184 GPR1/FUN34/yaaH family YPTB0611 PF00012 Hsp70 protein YPTB0612 PF00684 DnaJ central domain YPTB0612 PF01556 DnaJ C terminal domain YPTB0612 PF00226 DnaJ domain YPTB0613 PF06965 Na+/H+ antiporter 1 YPTB0614 PF03466 LysR substrate binding domain YPTB0614 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0615 PF01649 Ribosomal protein S20 YPTB0616 PF01687 Riboflavin kinase YPTB0616 PF06574 FAD synthetase YPTB0617 PF08264 Anticodon-binding domain of tRNA YPTB0617 PF00133 tRNA synthetases class I (I, L, M and V) YPTB0617 PF06827 Zinc finger found in FPG and IleRS YPTB0618 PF01252 Signal peptidase (SPase) II YPTB0619 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB0620 PF02401 LytB protein YPTB0621 PF01797 Transposase IS200 like YPTB0622 PF01113 Dihydrodipicolinate reductase, N-terminus YPTB0622 PF05173 Dihydrodipicolinate reductase, C-terminus YPTB0623 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPTB0623 PF00117 Glutamine amidotransferase class-I YPTB0624 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPTB0624 PF02142 MGS-like domain YPTB0624 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPTB0625 PF01810 LysE type translocator YPTB0626 PF06738 Putative threonine/serine exporter YPTB0627 PF12821 Threonine/Serine exporter, ThrE YPTB0628 PF00186 Dihydrofolate reductase YPTB0631 PF00149 Calcineurin-like phosphoesterase YPTB0632 PF04379 ApaG domain YPTB0633 PF00398 Ribosomal RNA adenine dimethylase YPTB0634 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPTB0635 PF00639 PPIC-type PPIASE domain YPTB0635 PF09312 SurA N-terminal domain YPTB0636 PF04453 LPS transport system D YPTB0636 PF03968 OstA-like protein YPTB0637 PF05099 Tellurite resistance protein TerB YPTB0637 PF00226 DnaJ domain YPTB0638 PF00849 RNA pseudouridylate synthase YPTB0647 PF00004 ATPase family associated with various cellular activities (AAA) YPTB0647 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB0647 PF17871 AAA lid domain YPTB0647 PF07724 AAA domain (Cdc48 subfamily) YPTB0648 PF04717 Type VI secretion system, phage-baseplate injector YPTB0655 PF05736 OprF membrane domain YPTB0655 PF00691 OmpA family YPTB0658 PF00176 SNF2 family N-terminal domain YPTB0658 PF18339 RapA N-terminal Tudor like domain 1 YPTB0658 PF00271 Helicase conserved C-terminal domain YPTB0658 PF18337 RapA N-terminal Tudor like domain YPTB0658 PF12137 RNA polymerase recycling family C-terminal YPTB0659 PF00136 DNA polymerase family B YPTB0659 PF03104 DNA polymerase family B, exonuclease domain YPTB0660 PF09335 SNARE associated Golgi protein YPTB0661 PF00005 ABC transporter YPTB0662 PF00528 Binding-protein-dependent transport system inner membrane component YPTB0666 PF13683 Integrase core domain YPTB0666 PF13276 HTH-like domain YPTB0667 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB0667 PF12793 Sugar transport-related sRNA regulator N-term YPTB0668 PF07690 Major Facilitator Superfamily YPTB0669 PF00694 Aconitase C-terminal domain YPTB0670 PF00330 Aconitase family (aconitate hydratase) YPTB0671 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTB0672 PF08502 LeuA allosteric (dimerisation) domain YPTB0672 PF00682 HMGL-like YPTB0673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0673 PF03466 LysR substrate binding domain YPTB0674 PF00501 AMP-binding enzyme YPTB0675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB0675 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB0675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB0676 PF10369 Small subunit of acetolactate synthase YPTB0677 PF00356 Bacterial regulatory proteins, lacI family YPTB0677 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB0678 PF06610 L-alanine exporter YPTB0679 PF02381 MraZ protein, putative antitoxin-like YPTB0680 PF01795 MraW methylase family YPTB0681 PF04999 Cell division protein FtsL YPTB0682 PF00905 Penicillin binding protein transpeptidase domain YPTB0682 PF03717 Penicillin-binding Protein dimerisation domain YPTB0683 PF08245 Mur ligase middle domain YPTB0683 PF01225 Mur ligase family, catalytic domain YPTB0683 PF02875 Mur ligase family, glutamate ligase domain YPTB0684 PF01225 Mur ligase family, catalytic domain YPTB0684 PF02875 Mur ligase family, glutamate ligase domain YPTB0684 PF08245 Mur ligase middle domain YPTB0685 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPTB0685 PF00953 Glycosyl transferase family 4 YPTB0686 PF02875 Mur ligase family, glutamate ligase domain YPTB0686 PF08245 Mur ligase middle domain YPTB0687 PF01098 Cell cycle protein YPTB0688 PF03033 Glycosyltransferase family 28 N-terminal domain YPTB0688 PF04101 Glycosyltransferase family 28 C-terminal domain YPTB0689 PF01225 Mur ligase family, catalytic domain YPTB0689 PF08245 Mur ligase middle domain YPTB0689 PF02875 Mur ligase family, glutamate ligase domain YPTB0690 PF01820 D-ala D-ala ligase N-terminus YPTB0690 PF07478 D-ala D-ala ligase C-terminus YPTB0691 PF08478 POTRA domain, FtsQ-type YPTB0691 PF03799 Cell division protein FtsQ YPTB0692 PF02491 SHS2 domain inserted in FTSA YPTB0693 PF12327 FtsZ family, C-terminal domain YPTB0693 PF00091 Tubulin/FtsZ family, GTPase domain YPTB0694 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPTB0696 PF06558 Secretion monitor precursor protein (SecM) YPTB0697 PF07517 SecA DEAD-like domain YPTB0697 PF02810 SEC-C motif YPTB0697 PF07516 SecA Wing and Scaffold domain YPTB0697 PF01043 SecA preprotein cross-linking domain YPTB0698 PF00293 NUDIX domain YPTB0699 PF01797 Transposase IS200 like YPTB0700 PF03884 DNA gyrase inhibitor YacG YPTB0701 PF07072 Cell division protein YPTB0702 PF01121 Dephospho-CoA kinase YPTB0703 PF00478 IMP dehydrogenase / GMP reductase domain YPTB0704 PF00872 Transposase, Mutator family YPTB0705 PF00482 Type II secretion system (T2SS), protein F YPTB0706 PF00437 Type II/IV secretion system protein YPTB0706 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPTB0707 PF07963 Prokaryotic N-terminal methylation motif YPTB0708 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPTB0708 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPTB0709 PF01510 N-acetylmuramoyl-L-alanine amidase YPTB0710 PF17113 Regulatory signalling modulator protein AmpE YPTB0711 PF00324 Amino acid permease YPTB0712 PF00392 Bacterial regulatory proteins, gntR family YPTB0712 PF07729 FCD domain YPTB0713 PF17831 Pyruvate dehydrogenase E1 component middle domain YPTB0713 PF00456 Transketolase, thiamine diphosphate binding domain YPTB0714 PF02817 e3 binding domain YPTB0714 PF00364 Biotin-requiring enzyme YPTB0714 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPTB0715 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB0715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB0716 PF11791 Aconitate B N-terminal domain YPTB0716 PF06434 Aconitate hydratase 2 N-terminus YPTB0716 PF00330 Aconitase family (aconitate hydratase) YPTB0717 PF06062 Uncharacterised protein family (UPF0231) YPTB0718 PF00892 EamA-like transporter family YPTB0719 PF02675 S-adenosylmethionine decarboxylase YPTB0720 PF17284 Spermidine synthase tetramerisation domain YPTB0721 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPTB0722 PF00394 Multicopper oxidase YPTB0722 PF07731 Multicopper oxidase YPTB0722 PF07732 Multicopper oxidase YPTB0722 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPTB0723 PF00156 Phosphoribosyl transferase domain YPTB0724 PF00484 Carbonic anhydrase YPTB0725 PF00005 ABC transporter YPTB0726 PF01061 ABC-2 type transporter YPTB0727 PF01522 Polysaccharide deacetylase YPTB0728 PF02261 Aspartate decarboxylase YPTB0729 PF02569 Pantoate-beta-alanine ligase YPTB0730 PF02548 Ketopantoate hydroxymethyltransferase YPTB0731 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPTB0732 PF12627 Probable RNA and SrmB- binding site of polymerase A YPTB0732 PF12626 Polymerase A arginine-rich C-terminus YPTB0732 PF01743 Poly A polymerase head domain YPTB0733 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTB0734 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPTB0735 PF17746 SfsA N-terminal OB domain YPTB0735 PF03749 Sugar fermentation stimulation protein RE domain YPTB0736 PF02834 LigT like Phosphoesterase YPTB0737 PF08482 ATP-dependent helicase C-terminal YPTB0737 PF04408 Helicase associated domain (HA2) YPTB0737 PF00270 DEAD/DEAH box helicase YPTB0737 PF00271 Helicase conserved C-terminal domain YPTB0738 PF00905 Penicillin binding protein transpeptidase domain YPTB0738 PF00912 Transglycosylase YPTB0738 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPTB0738 PF14814 Bifunctional transglycosylase second domain YPTB0739 PF00005 ABC transporter YPTB0740 PF01497 Periplasmic binding protein YPTB0741 PF01032 FecCD transport family YPTB0742 PF00202 Aminotransferase class-III YPTB0743 PF00654 Voltage gated chloride channel YPTB0744 PF01521 Iron-sulphur cluster biosynthesis YPTB0745 PF03458 UPF0126 domain YPTB0746 PF01497 Periplasmic binding protein YPTB0747 PF01048 Phosphorylase superfamily YPTB0748 PF13286 Phosphohydrolase-associated domain YPTB0748 PF01966 HD domain YPTB0749 PF00595 PDZ domain YPTB0750 PF00672 HAMP domain YPTB0750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB0750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPTB0750 PF00512 His Kinase A (phospho-acceptor) domain YPTB0750 PF00072 Response regulator receiver domain YPTB0750 PF01627 Hpt domain YPTB0751 PF02824 TGS domain YPTB0751 PF04607 Region found in RelA / SpoT proteins YPTB0751 PF13291 ACT domain YPTB0753 PF03819 MazG nucleotide pyrophosphohydrolase domain YPTB0754 PF06418 CTP synthase N-terminus YPTB0754 PF00117 Glutamine amidotransferase class-I YPTB0755 PF03952 Enolase, N-terminal domain YPTB0755 PF00113 Enolase, C-terminal TIM barrel domain YPTB0756 PF00080 Copper/zinc superoxide dismutase (SODC) YPTB0757 PF04055 Radical SAM superfamily YPTB0758 PF01242 6-pyruvoyl tetrahydropterin synthase YPTB0759 PF00175 Oxidoreductase NAD-binding domain YPTB0759 PF00258 Flavodoxin YPTB0759 PF00667 FAD binding domain YPTB0760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPTB0760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPTB0761 PF01507 Phosphoadenosine phosphosulfate reductase family YPTB0764 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTB0764 PF14824 Sirohaem biosynthesis protein central YPTB0764 PF10414 Sirohaem synthase dimerisation region YPTB0765 PF01507 Phosphoadenosine phosphosulfate reductase family YPTB0766 PF00009 Elongation factor Tu GTP binding domain YPTB0768 PF12084 Protein of unknown function (DUF3561) YPTB0769 PF04977 Septum formation initiator YPTB0770 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPTB0771 PF02542 YgbB family YPTB0772 PF01142 tRNA pseudouridine synthase D (TruD) YPTB0773 PF01975 Survival protein SurE YPTB0775 PF01476 LysM domain YPTB0775 PF01551 Peptidase family M23 YPTB0776 PF04539 Sigma-70 region 3 YPTB0776 PF00140 Sigma-70 factor, region 1.2 YPTB0776 PF04545 Sigma-70, region 4 YPTB0776 PF04542 Sigma-70 region 2 YPTB0777 PF00872 Transposase, Mutator family YPTB0778 PF05188 MutS domain II YPTB0778 PF05192 MutS domain III YPTB0778 PF01624 MutS domain I YPTB0778 PF05190 MutS family domain IV YPTB0778 PF00488 MutS domain V YPTB0779 PF02502 Ribose/Galactose Isomerase YPTB0780 PF08240 Alcohol dehydrogenase GroES-like domain YPTB0780 PF00107 Zinc-binding dehydrogenase YPTB0782 PF02733 Dak1 domain YPTB0783 PF02734 DAK2 domain YPTB0784 PF04198 Putative sugar-binding domain YPTB0784 PF13936 Helix-turn-helix domain YPTB0785 PF02040 Arsenical pump membrane protein YPTB0786 PF01022 Bacterial regulatory protein, arsR family YPTB0789 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB0790 PF14376 Haem-binding domain YPTB0790 PF00034 Cytochrome c YPTB0790 PF03150 Di-haem cytochrome c peroxidase YPTB0792 PF07715 TonB-dependent Receptor Plug Domain YPTB0792 PF00593 TonB dependent receptor YPTB0794 PF00557 Metallopeptidase family M24 YPTB0796 PF05683 Fumarase C-terminus YPTB0796 PF05681 Fumarate hydratase (Fumerase) YPTB0797 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB0797 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB0798 PF01261 Xylose isomerase-like TIM barrel YPTB0799 PF02653 Branched-chain amino acid transport system / permease component YPTB0800 PF02653 Branched-chain amino acid transport system / permease component YPTB0801 PF00005 ABC transporter YPTB0803 PF00455 DeoR C terminal sensor domain YPTB0803 PF08220 DeoR-like helix-turn-helix domain YPTB0804 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB0805 PF01568 Molydopterin dinucleotide binding domain YPTB0805 PF00384 Molybdopterin oxidoreductase YPTB0805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB0806 PF13247 4Fe-4S dicluster domain YPTB0806 PF12800 4Fe-4S binding domain YPTB0807 PF04976 DMSO reductase anchor subunit (DmsC) YPTB0808 PF02613 Nitrate reductase delta subunit YPTB0809 PF01292 Prokaryotic cytochrome b561 YPTB0810 PF07361 Cytochrome b562 YPTB0811 PF00141 Peroxidase YPTB0814 PF00005 ABC transporter YPTB0815 PF02653 Branched-chain amino acid transport system / permease component YPTB0816 PF00456 Transketolase, thiamine diphosphate binding domain YPTB0817 PF02779 Transketolase, pyrimidine binding domain YPTB0817 PF02780 Transketolase, C-terminal domain YPTB0818 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB0818 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB0821 PF07690 Major Facilitator Superfamily YPTB0822 PF02464 Competence-damaged protein YPTB0823 PF00154 recA bacterial DNA recombination protein YPTB0824 PF02631 RecX family YPTB0825 PF01411 tRNA synthetases class II (A) YPTB0825 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPTB0825 PF02272 DHHA1 domain YPTB0826 PF02599 Global regulator protein family YPTB0827 PF13419 Haloacid dehalogenase-like hydrolase YPTB0828 PF09335 SNARE associated Golgi protein YPTB0829 PF04262 Glutamate-cysteine ligase YPTB0830 PF02664 S-Ribosylhomocysteinase (LuxS) YPTB0831 PF03471 Transporter associated domain YPTB0831 PF00571 CBS domain YPTB0831 PF01595 Cyclin M transmembrane N-terminal domain YPTB0832 PF01578 Cytochrome C assembly protein YPTB0833 PF02881 SRP54-type protein, helical bundle domain YPTB0833 PF00448 SRP54-type protein, GTPase domain YPTB0833 PF02978 Signal peptide binding domain YPTB0834 PF00886 Ribosomal protein S16 YPTB0835 PF01782 RimM N-terminal domain YPTB0835 PF05239 PRC-barrel domain YPTB0836 PF01746 tRNA (Guanine-1)-methyltransferase YPTB0837 PF01245 Ribosomal protein L19 YPTB0838 PF04338 Protein of unknown function, DUF481 YPTB0839 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPTB0840 PF04397 LytTr DNA-binding domain YPTB0840 PF00072 Response regulator receiver domain YPTB0841 PF00793 DAHP synthetase I family YPTB0842 PF02153 Prephenate dehydrogenase YPTB0842 PF01817 Chorismate mutase type II YPTB0843 PF00800 Prephenate dehydratase YPTB0843 PF01817 Chorismate mutase type II YPTB0844 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPTB0845 PF13525 Outer membrane lipoprotein YPTB0846 PF00849 RNA pseudouridylate synthase YPTB0846 PF01479 S4 domain YPTB0848 PF17871 AAA lid domain YPTB0848 PF02861 Clp amino terminal domain, pathogenicity island component YPTB0848 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB0848 PF07724 AAA domain (Cdc48 subfamily) YPTB0848 PF00004 ATPase family associated with various cellular activities (AAA) YPTB0849 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPTB0850 PF13091 PLD-like domain YPTB0851 PF13607 Succinyl-CoA ligase like flavodoxin domain YPTB0851 PF13380 CoA binding domain YPTB0851 PF00583 Acetyltransferase (GNAT) family YPTB0853 PF00085 Thioredoxin YPTB0854 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPTB0854 PF00588 SpoU rRNA Methylase family YPTB0855 PF07690 Major Facilitator Superfamily YPTB0856 PF00529 HlyD membrane-fusion protein of T1SS YPTB0856 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB0857 PF01047 MarR family YPTB0858 PF05437 Branched-chain amino acid transport protein (AzlD) YPTB0859 PF03591 AzlC protein YPTB0860 PF07690 Major Facilitator Superfamily YPTB0862 PF01425 Amidase YPTB0866 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB0867 PF00528 Binding-protein-dependent transport system inner membrane component YPTB0869 PF00005 ABC transporter YPTB0870 PF00266 Aminotransferase class-V YPTB0871 PF07687 Peptidase dimerisation domain YPTB0871 PF01546 Peptidase family M20/M25/M40 YPTB0872 PF00795 Carbon-nitrogen hydrolase YPTB0873 PF00155 Aminotransferase class I and II YPTB0874 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB0876 PF03079 ARD/ARD' family YPTB0877 PF01008 Initiation factor 2 subunit family YPTB0878 PF01636 Phosphotransferase enzyme family YPTB0879 PF08479 POTRA domain, ShlB-type YPTB0879 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB0880 PF05860 haemagglutination activity domain YPTB0881 PF18254 HMW1 domain 2 YPTB0881 PF18071 HMW1C N-terminal YPTB0883 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPTB0883 PF09317 Domain of unknown function (DUF1974) YPTB0883 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTB0884 PF13580 SIS domain YPTB0885 PF13230 Glutamine amidotransferases class-II YPTB0886 PF03734 L,D-transpeptidase catalytic domain YPTB0887 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPTB0887 PF11973 NQRA C-terminal domain YPTB0888 PF03116 NQR2, RnfD, RnfE family YPTB0889 PF04205 FMN-binding domain YPTB0890 PF02508 Rnf-Nqr subunit, membrane protein YPTB0891 PF02508 Rnf-Nqr subunit, membrane protein YPTB0892 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB0892 PF00175 Oxidoreductase NAD-binding domain YPTB0892 PF00970 Oxidoreductase FAD-binding domain YPTB0893 PF02424 ApbE family YPTB0895 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB0896 PF11799 impB/mucB/samB family C-terminal domain YPTB0896 PF11798 IMS family HHH motif YPTB0896 PF00817 impB/mucB/samB family YPTB0897 PF07687 Peptidase dimerisation domain YPTB0897 PF01546 Peptidase family M20/M25/M40 YPTB0898 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB0898 PF03466 LysR substrate binding domain YPTB0901 PF00156 Phosphoribosyl transferase domain YPTB0903 PF07417 Sigma factor-binding transcriptional regulator Crl YPTB0904 PF01472 PUA domain YPTB0904 PF00696 Amino acid kinase family YPTB0905 PF00171 Aldehyde dehydrogenase family YPTB0906 PF07238 PilZ domain YPTB0906 PF07317 Flagellar regulator YcgR YPTB0908 PF08241 Methyltransferase domain YPTB0911 PF01202 Shikimate kinase YPTB0912 PF06865 Pyrimidine/purine nucleoside phosphorylase YPTB0913 PF04381 Putative exonuclease, RdgC YPTB0914 PF00480 ROK family YPTB0915 PF13476 AAA domain YPTB0916 PF00149 Calcineurin-like phosphoesterase YPTB0916 PF12320 Type 5 capsule protein repressor C-terminal domain YPTB0917 PF00486 Transcriptional regulatory protein, C terminal YPTB0917 PF00072 Response regulator receiver domain YPTB0918 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB0918 PF00512 His Kinase A (phospho-acceptor) domain YPTB0918 PF00989 PAS fold YPTB0918 PF11808 Phosphate regulon sensor protein PhoR YPTB0919 PF12849 PBP superfamily domain YPTB0920 PF05525 Branched-chain amino acid transport protein YPTB0921 PF00324 Amino acid permease YPTB0922 PF00128 Alpha amylase, catalytic domain YPTB0922 PF02903 Alpha amylase, N-terminal ig-like domain YPTB0925 PF00578 AhpC/TSA family YPTB0925 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPTB0926 PF04336 Acyl carrier protein phosphodiesterase YPTB0927 PF02547 Queuosine biosynthesis protein YPTB0928 PF01702 Queuine tRNA-ribosyltransferase YPTB0929 PF02699 Preprotein translocase subunit YPTB0930 PF07549 SecD/SecF GG Motif YPTB0930 PF13721 SecD export protein N-terminal TM region YPTB0930 PF02355 Protein export membrane protein YPTB0931 PF07549 SecD/SecF GG Motif YPTB0931 PF02355 Protein export membrane protein YPTB0933 PF03477 ATP cone domain YPTB0934 PF01872 RibD C-terminal domain YPTB0934 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPTB0935 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPTB0936 PF01029 NusB family YPTB0937 PF00586 AIR synthase related protein, N-terminal domain YPTB0937 PF02769 AIR synthase related protein, C-terminal domain YPTB0938 PF04608 Phosphatidylglycerophosphatase A YPTB0939 PF02779 Transketolase, pyrimidine binding domain YPTB0939 PF02780 Transketolase, C-terminal domain YPTB0939 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPTB0940 PF00348 Polyprenyl synthetase YPTB0941 PF02609 Exonuclease VII small subunit YPTB0943 PF02926 THUMP domain YPTB0943 PF02568 Thiamine biosynthesis protein (ThiI) YPTB0944 PF01965 DJ-1/PfpI family YPTB0945 PF02558 Ketopantoate reductase PanE/ApbA YPTB0945 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPTB0946 PF04461 Protein of unknown function (DUF520) YPTB0947 PF07690 Major Facilitator Superfamily YPTB0948 PF01040 UbiA prenyltransferase family YPTB0949 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPTB0950 PF00510 Cytochrome c oxidase subunit III YPTB0951 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPTB0952 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPTB0952 PF06481 COX Aromatic Rich Motif YPTB0953 PF03502 Nucleoside-specific channel-forming protein, Tsx YPTB0954 PF07690 Major Facilitator Superfamily YPTB0955 PF03923 Uncharacterized lipoprotein YPTB0955 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTB0956 PF01722 BolA-like protein YPTB0958 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB0958 PF05698 Bacterial trigger factor protein (TF) C-terminus YPTB0958 PF05697 Bacterial trigger factor protein (TF) YPTB0959 PF00574 Clp protease YPTB0960 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB0960 PF06689 ClpX C4-type zinc finger YPTB0960 PF07724 AAA domain (Cdc48 subfamily) YPTB0961 PF05362 Lon protease (S16) C-terminal proteolytic domain YPTB0961 PF00004 ATPase family associated with various cellular activities (AAA) YPTB0961 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPTB0962 PF00216 Bacterial DNA-binding protein YPTB0963 PF13145 PPIC-type PPIASE domain YPTB0966 PF06508 Queuosine biosynthesis protein QueC YPTB0967 PF12793 Sugar transport-related sRNA regulator N-term YPTB0967 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB0969 PF00291 Pyridoxal-phosphate dependent enzyme YPTB0970 PF01037 Lrp/AsnC ligand binding domain YPTB0970 PF13404 AsnC-type helix-turn-helix domain YPTB0971 PF00664 ABC transporter transmembrane region YPTB0971 PF00005 ABC transporter YPTB0972 PF00005 ABC transporter YPTB0972 PF00664 ABC transporter transmembrane region YPTB0973 PF00543 Nitrogen regulatory protein P-II YPTB0974 PF00909 Ammonium Transporter Family YPTB0976 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPTB0977 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTB0978 PF05321 Haemolysin expression modulating protein YPTB0979 PF10757 Biofilm formation regulator YbaJ YPTB0981 PF00444 Ribosomal protein L36 YPTB0982 PF01197 Ribosomal protein L31 YPTB0983 PF00873 AcrB/AcrD/AcrF family YPTB0984 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB0984 PF00529 HlyD membrane-fusion protein of T1SS YPTB0985 PF00440 Bacterial regulatory proteins, tetR family YPTB0985 PF08361 MAATS-type transcriptional repressor, C-terminal region YPTB0986 PF02635 DsrE/DsrF-like family YPTB0987 PF12795 Mechanosensitive ion channel porin domain YPTB0987 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPTB0987 PF00924 Mechanosensitive ion channel YPTB0988 PF10689 Protein of unknown function (DUF2496) YPTB0990 PF04304 Protein of unknown function (DUF454) YPTB0991 PF00156 Phosphoribosyl transferase domain YPTB0992 PF12169 DNA polymerase III subunits gamma and tau domain III YPTB0992 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPTB0992 PF12170 DNA polymerase III tau subunit V interacting with alpha YPTB0993 PF02575 YbaB/EbfC DNA-binding family YPTB0994 PF13662 Toprim domain YPTB0994 PF02132 RecR protein YPTB0995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB0995 PF00183 Hsp90 protein YPTB0996 PF05191 Adenylate kinase, active site lid YPTB0997 PF00762 Ferrochelatase YPTB0998 PF00175 Oxidoreductase NAD-binding domain YPTB0998 PF00970 Oxidoreductase FAD-binding domain YPTB0998 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB0999 PF00483 Nucleotidyl transferase YPTB1000 PF16363 GDP-mannose 4,6 dehydratase YPTB1001 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTB1002 PF01370 NAD dependent epimerase/dehydratase family YPTB1008 PF13439 Glycosyltransferase Family 4 YPTB1008 PF00534 Glycosyl transferases group 1 YPTB1009 PF16363 GDP-mannose 4,6 dehydratase YPTB1010 PF01370 NAD dependent epimerase/dehydratase family YPTB1011 PF01050 Mannose-6-phosphate isomerase YPTB1011 PF00483 Nucleotidyl transferase YPTB1012 PF00535 Glycosyl transferase family 2 YPTB1013 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTB1013 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTB1013 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTB1013 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTB1014 PF02706 Chain length determinant protein YPTB1015 PF00294 pfkB family carbohydrate kinase YPTB1016 PF02254 TrkA-N domain YPTB1016 PF00999 Sodium/hydrogen exchanger family YPTB1017 PF07690 Major Facilitator Superfamily YPTB1020 PF04073 Aminoacyl-tRNA editing domain YPTB1021 PF01963 TraB family YPTB1022 PF00403 Heavy-metal-associated domain YPTB1023 PF13411 MerR HTH family regulatory protein YPTB1024 PF01957 NfeD-like C-terminal, partner-binding YPTB1025 PF01145 SPFH domain / Band 7 family YPTB1025 PF16200 C-terminal region of band_7 YPTB1026 PF00085 Thioredoxin YPTB1027 PF00106 short chain dehydrogenase YPTB1028 PF13472 GDSL-like Lipase/Acylhydrolase family YPTB1029 PF00005 ABC transporter YPTB1031 PF02222 ATP-grasp domain YPTB1031 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPTB1032 PF00731 AIR carboxylase YPTB1033 PF00149 Calcineurin-like phosphoesterase YPTB1034 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPTB1035 PF01406 tRNA synthetases class I (C) catalytic domain YPTB1035 PF09190 DALR domain YPTB1037 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPTB1037 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPTB1044 PF01066 CDP-alcohol phosphatidyltransferase YPTB1046 PF01553 Acyltransferase YPTB1047 PF12146 Serine aminopeptidase, S33 YPTB1047 PF12147 Putative methyltransferase YPTB1048 PF00782 Dual specificity phosphatase, catalytic domain YPTB1051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB1051 PF03466 LysR substrate binding domain YPTB1052 PF00248 Aldo/keto reductase family YPTB1053 PF00248 Aldo/keto reductase family YPTB1058 PF01479 S4 domain YPTB1058 PF00849 RNA pseudouridylate synthase YPTB1059 PF08007 Cupin superfamily protein YPTB1061 PF13018 Extended Signal Peptide of Type V secretion system YPTB1061 PF03797 Autotransporter beta-domain YPTB1061 PF03212 Pertactin YPTB1061 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB1064 PF05638 Type VI secretion system effector, Hcp YPTB1067 PF13693 Winged helix-turn-helix DNA-binding YPTB1068 PF00905 Penicillin binding protein transpeptidase domain YPTB1068 PF00912 Transglycosylase YPTB1068 PF06832 Penicillin-Binding Protein C-terminus Family YPTB1069 PF07703 Alpha-2-macroglobulin bait region domain YPTB1069 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPTB1069 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPTB1069 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPTB1069 PF01835 MG2 domain YPTB1069 PF17962 Bacterial macroglobulin domain 6 YPTB1069 PF00207 Alpha-2-macroglobulin family YPTB1071 PF00171 Aldehyde dehydrogenase family YPTB1072 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB1072 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB1072 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB1073 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB1073 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB1074 PF13407 Periplasmic binding protein domain YPTB1075 PF00005 ABC transporter YPTB1076 PF02653 Branched-chain amino acid transport system / permease component YPTB1077 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB1077 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB1078 PF00294 pfkB family carbohydrate kinase YPTB1079 PF01261 Xylose isomerase-like TIM barrel YPTB1080 PF04962 KduI/IolB family YPTB1082 PF00664 ABC transporter transmembrane region YPTB1082 PF00005 ABC transporter YPTB1086 PF00196 Bacterial regulatory proteins, luxR family YPTB1087 PF00313 'Cold-shock' DNA-binding domain YPTB1088 PF00313 'Cold-shock' DNA-binding domain YPTB1089 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTB1090 PF02416 mttA/Hcf106 family YPTB1091 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPTB1091 PF04055 Radical SAM superfamily YPTB1092 PF03099 Biotin/lipoate A/B protein ligase family YPTB1093 PF04359 Protein of unknown function (DUF493) YPTB1094 PF00768 D-alanyl-D-alanine carboxypeptidase YPTB1094 PF07943 Penicillin-binding protein 5, C-terminal domain YPTB1095 PF03330 Lytic transglycolase YPTB1095 PF05036 Sporulation related domain YPTB1096 PF01098 Cell cycle protein YPTB1097 PF00905 Penicillin binding protein transpeptidase domain YPTB1097 PF03717 Penicillin-binding Protein dimerisation domain YPTB1098 PF02590 Predicted SPOUT methyltransferase YPTB1100 PF01467 Cytidylyltransferase-like YPTB1101 PF06144 DNA polymerase III, delta subunit YPTB1101 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPTB1102 PF04390 Lipopolysaccharide-assembly YPTB1103 PF00133 tRNA synthetases class I (I, L, M and V) YPTB1103 PF13603 Leucyl-tRNA synthetase, Domain 2 YPTB1103 PF08264 Anticodon-binding domain of tRNA YPTB1104 PF07295 Zinc-ribbon containing domain YPTB1105 PF00005 ABC transporter YPTB1106 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1107 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1108 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB1109 PF00795 Carbon-nitrogen hydrolase YPTB1110 PF00571 CBS domain YPTB1110 PF03471 Transporter associated domain YPTB1111 PF02130 Uncharacterized protein family UPF0054 YPTB1112 PF02562 PhoH-like protein YPTB1113 PF04055 Radical SAM superfamily YPTB1113 PF00919 Uncharacterized protein family UPF0004 YPTB1113 PF01938 TRAM domain YPTB1114 PF01494 FAD binding domain YPTB1115 PF00733 Asparagine synthase YPTB1115 PF13537 Glutamine amidotransferase domain YPTB1116 PF13344 Haloacid dehalogenase-like hydrolase YPTB1117 PF00480 ROK family YPTB1117 PF01047 MarR family YPTB1118 PF01979 Amidohydrolase family YPTB1119 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPTB1120 PF02378 Phosphotransferase system, EIIC YPTB1120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPTB1120 PF00367 phosphotransferase system, EIIB YPTB1121 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTB1121 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPTB1122 PF03573 outer membrane porin, OprD family YPTB1123 PF02838 Glycosyl hydrolase family 20, domain 2 YPTB1123 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPTB1123 PF03173 Putative carbohydrate binding domain YPTB1123 PF00728 Glycosyl hydrolase family 20, catalytic domain YPTB1124 PF01475 Ferric uptake regulator family YPTB1125 PF00258 Flavodoxin YPTB1127 PF01402 Ribbon-helix-helix protein, copG family YPTB1128 PF12697 Alpha/beta hydrolase family YPTB1130 PF01527 Transposase YPTB1132 PF02796 Helix-turn-helix domain of resolvase YPTB1132 PF00665 Integrase core domain YPTB1133 PF01695 IstB-like ATP binding protein YPTB1135 PF01668 SmpB protein YPTB1136 PF03364 Polyketide cyclase / dehydrase and lipid transport YPTB1137 PF03658 RnfH family Ubiquitin YPTB1138 PF04355 SmpA / OmlA family YPTB1139 PF02463 RecF/RecN/SMC N terminal domain YPTB1140 PF01513 ATP-NAD kinase YPTB1141 PF01025 GrpE YPTB1142 PF00285 Citrate synthase, C-terminal domain YPTB1143 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPTB1144 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPTB1145 PF00890 FAD binding domain YPTB1145 PF02910 Fumarate reductase flavoprotein C-term YPTB1146 PF13085 2Fe-2S iron-sulfur cluster binding domain YPTB1147 PF16078 2-oxoglutarate dehydrogenase N-terminus YPTB1147 PF02779 Transketolase, pyrimidine binding domain YPTB1147 PF16870 2-oxoglutarate dehydrogenase C-terminal YPTB1147 PF00676 Dehydrogenase E1 component YPTB1148 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPTB1148 PF02817 e3 binding domain YPTB1148 PF00364 Biotin-requiring enzyme YPTB1149 PF00549 CoA-ligase YPTB1149 PF08442 ATP-grasp domain YPTB1150 PF00549 CoA-ligase YPTB1150 PF02629 CoA binding domain YPTB1151 PF01654 Cytochrome bd terminal oxidase subunit I YPTB1152 PF02322 Cytochrome bd terminal oxidase subunit II YPTB1153 PF08173 Membrane bound YbgT-like protein YPTB1154 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPTB1155 PF03061 Thioesterase superfamily YPTB1156 PF01618 MotA/TolQ/ExbB proton channel family YPTB1157 PF02472 Biopolymer transport protein ExbD/TolR YPTB1158 PF06519 TolA C-terminal YPTB1158 PF06519 TolA C-terminal YPTB1159 PF07676 WD40-like Beta Propeller Repeat YPTB1159 PF04052 TolB amino-terminal domain YPTB1160 PF00691 OmpA family YPTB1161 PF13174 Tetratricopeptide repeat YPTB1161 PF16331 TolA binding protein trimerisation YPTB1162 PF02445 Quinolinate synthetase A protein YPTB1163 PF04973 Nicotinamide mononucleotide transporter YPTB1164 PF01545 Cation efflux family YPTB1165 PF00793 DAHP synthetase I family YPTB1166 PF00300 Histidine phosphatase superfamily (branch 1) YPTB1168 PF01263 Aldose 1-epimerase YPTB1169 PF00288 GHMP kinases N terminal domain YPTB1169 PF08544 GHMP kinases C terminal YPTB1169 PF10509 Galactokinase galactose-binding signature YPTB1170 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPTB1170 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPTB1171 PF16363 GDP-mannose 4,6 dehydratase YPTB1173 PF00005 ABC transporter YPTB1174 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB1174 PF03459 TOBE domain YPTB1175 PF10766 Multidrug efflux pump-associated protein AcrZ YPTB1177 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1178 PF03459 TOBE domain YPTB1178 PF00005 ABC transporter YPTB1180 PF10282 Lactonase, 7-bladed beta-propeller YPTB1181 PF00202 Aminotransferase class-III YPTB1182 PF06968 Biotin and Thiamin Synthesis associated domain YPTB1182 PF04055 Radical SAM superfamily YPTB1183 PF00155 Aminotransferase class I and II YPTB1184 PF08241 Methyltransferase domain YPTB1187 PF00271 Helicase conserved C-terminal domain YPTB1187 PF12344 Ultra-violet resistance protein B YPTB1187 PF04851 Type III restriction enzyme, res subunit YPTB1187 PF17757 UvrB interaction domain YPTB1187 PF02151 UvrB/uvrC motif YPTB1188 PF09905 DNA-binding protein VF530 YPTB1189 PF01933 Uncharacterised protein family UPF0052 YPTB1190 PF04055 Radical SAM superfamily YPTB1190 PF06463 Molybdenum Cofactor Synthesis C YPTB1191 PF01967 MoaC family YPTB1192 PF02597 ThiS family YPTB1193 PF02391 MoaE protein YPTB1194 PF01027 Inhibitor of apoptosis-promoting Bax1 YPTB1195 PF05199 GMC oxidoreductase YPTB1195 PF00732 GMC oxidoreductase YPTB1196 PF00171 Aldehyde dehydrogenase family YPTB1197 PF13977 BetI-type transcriptional repressor, C-terminal YPTB1197 PF00440 Bacterial regulatory proteins, tetR family YPTB1198 PF02028 BCCT, betaine/carnitine/choline family transporter YPTB1199 PF03466 LysR substrate binding domain YPTB1199 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB1201 PF01048 Phosphorylase superfamily YPTB1202 PF03825 Nucleoside H+ symporter YPTB1203 PF13801 Heavy-metal resistance YPTB1204 PF00512 His Kinase A (phospho-acceptor) domain YPTB1204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB1205 PF00158 Sigma-54 interaction domain YPTB1205 PF00072 Response regulator receiver domain YPTB1205 PF02954 Bacterial regulatory protein, Fis family YPTB1206 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTB1207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB1207 PF03466 LysR substrate binding domain YPTB1211 PF00005 ABC transporter YPTB1212 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB1213 PF09209 Tetracyclin repressor-like, C-terminal domain YPTB1213 PF00440 Bacterial regulatory proteins, tetR family YPTB1214 PF00271 Helicase conserved C-terminal domain YPTB1214 PF00270 DEAD/DEAH box helicase YPTB1216 PF01207 Dihydrouridine synthase (Dus) YPTB1217 PF00768 D-alanyl-D-alanine carboxypeptidase YPTB1218 PF09330 D-lactate dehydrogenase, membrane binding YPTB1218 PF01565 FAD binding domain YPTB1219 PF01928 CYTH domain YPTB1220 PF01844 HNH endonuclease YPTB1222 PF04226 Transglycosylase associated protein YPTB1223 PF00005 ABC transporter YPTB1225 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1226 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1227 PF07308 Protein of unknown function (DUF1456) YPTB1228 PF13188 PAS domain YPTB1228 PF02954 Bacterial regulatory protein, Fis family YPTB1228 PF00158 Sigma-54 interaction domain YPTB1229 PF02653 Branched-chain amino acid transport system / permease component YPTB1230 PF02653 Branched-chain amino acid transport system / permease component YPTB1231 PF00005 ABC transporter YPTB1232 PF00005 ABC transporter YPTB1235 PF00581 Rhodanese-like domain YPTB1236 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTB1237 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1238 PF00005 ABC transporter YPTB1239 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1240 PF13520 Amino acid permease YPTB1241 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPTB1241 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPTB1241 PF01276 Orn/Lys/Arg decarboxylase, major domain YPTB1243 PF00892 EamA-like transporter family YPTB1244 PF00267 Gram-negative porin YPTB1245 PF13307 Helicase C-terminal domain YPTB1245 PF06733 DEAD_2 YPTB1246 PF06628 Catalase-related immune-responsive YPTB1246 PF00199 Catalase YPTB1247 PF07437 YfaZ precursor YPTB1248 PF03222 Tryptophan/tyrosine permease family YPTB1250 PF00994 Probable molybdopterin binding domain YPTB1251 PF03974 Ecotin YPTB1252 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB1253 PF00268 Ribonucleotide reductase, small chain YPTB1254 PF03477 ATP cone domain YPTB1254 PF00317 Ribonucleotide reductase, all-alpha domain YPTB1254 PF02867 Ribonucleotide reductase, barrel domain YPTB1256 PF00521 DNA gyrase/topoisomerase IV, subunit A YPTB1256 PF03989 DNA gyrase C-terminal domain, beta-propeller YPTB1257 PF09456 RcsC Alpha-Beta-Loop (ABL) YPTB1257 PF00072 Response regulator receiver domain YPTB1257 PF00512 His Kinase A (phospho-acceptor) domain YPTB1257 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB1258 PF00072 Response regulator receiver domain YPTB1258 PF00196 Bacterial regulatory proteins, luxR family YPTB1259 PF01627 Hpt domain YPTB1259 PF16359 RcsD-ABL domain YPTB1259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB1260 PF07690 Major Facilitator Superfamily YPTB1261 PF00267 Gram-negative porin YPTB1262 PF00144 Beta-lactamase YPTB1264 PF12706 Beta-lactamase superfamily domain YPTB1265 PF00672 HAMP domain YPTB1265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB1265 PF02743 Cache domain YPTB1266 PF01278 Omptin family YPTB1267 PF06183 DinI-like family YPTB1268 PF00717 Peptidase S24-like YPTB1268 PF01381 Helix-turn-helix YPTB1269 PF06530 Phage antitermination protein Q YPTB1270 PF17042 Nucleotide-binding C-terminal domain YPTB1270 PF07005 Sugar-binding N-terminal domain YPTB1272 PF00455 DeoR C terminal sensor domain YPTB1272 PF08220 DeoR-like helix-turn-helix domain YPTB1273 PF01261 Xylose isomerase-like TIM barrel YPTB1277 PF17482 Phage tail sheath C-terminal domain YPTB1277 PF04984 Phage tail sheath protein subtilisin-like domain YPTB1285 PF04865 Baseplate J-like protein YPTB1289 PF01418 Helix-turn-helix domain, rpiR family YPTB1289 PF01380 SIS domain YPTB1290 PF00232 Glycosyl hydrolase family 1 YPTB1296 PF11893 Domain of unknown function (DUF3413) YPTB1296 PF00884 Sulfatase YPTB1297 PF07208 Protein of unknown function (DUF1414) YPTB1298 PF04245 37-kD nucleoid-associated bacterial protein YPTB1299 PF01386 Ribosomal L25p family YPTB1300 PF00271 Helicase conserved C-terminal domain YPTB1300 PF04851 Type III restriction enzyme, res subunit YPTB1301 PF01479 S4 domain YPTB1301 PF00849 RNA pseudouridylate synthase YPTB1302 PF07690 Major Facilitator Superfamily YPTB1303 PF13989 YejG-like protein YPTB1304 PF00005 ABC transporter YPTB1304 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB1305 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1305 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB1306 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1307 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB1308 PF00563 EAL domain YPTB1308 PF12792 CSS motif domain associated with EAL YPTB1309 PF00877 NlpC/P60 family YPTB1310 PF01569 PAP2 superfamily YPTB1311 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPTB1311 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPTB1313 PF00392 Bacterial regulatory proteins, gntR family YPTB1313 PF07729 FCD domain YPTB1314 PF08125 Mannitol dehydrogenase C-terminal domain YPTB1314 PF01232 Mannitol dehydrogenase Rossmann domain YPTB1315 PF03786 D-mannonate dehydratase (UxuA) YPTB1316 PF09285 Elongation factor P, C-terminal YPTB1316 PF01132 Elongation factor P (EF-P) OB domain YPTB1316 PF08207 Elongation factor P (EF-P) KOW-like domain YPTB1317 PF03222 Tryptophan/tyrosine permease family YPTB1318 PF03692 Putative zinc- or iron-chelating domain YPTB1320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB1320 PF01842 ACT domain YPTB1320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB1322 PF00171 Aldehyde dehydrogenase family YPTB1323 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB1323 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB1324 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPTB1326 PF00005 ABC transporter YPTB1327 PF02653 Branched-chain amino acid transport system / permease component YPTB1328 PF00293 NUDIX domain YPTB1329 PF00381 PTS HPr component phosphorylation site YPTB1329 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB1330 PF00294 pfkB family carbohydrate kinase YPTB1331 PF02378 Phosphotransferase system, EIIC YPTB1331 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB1332 PF00486 Transcriptional regulatory protein, C terminal YPTB1333 PF17550 Family of unknown function YPTB1335 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB1335 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB1336 PF00577 Outer membrane usher protein YPTB1336 PF13953 PapC C-terminal domain YPTB1336 PF13954 PapC N-terminal domain YPTB1337 PF01261 Xylose isomerase-like TIM barrel YPTB1338 PF03601 Conserved hypothetical protein 698 YPTB1339 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB1339 PF03466 LysR substrate binding domain YPTB1340 PF00324 Amino acid permease YPTB1342 PF01032 FecCD transport family YPTB1343 PF00005 ABC transporter YPTB1344 PF00593 TonB dependent receptor YPTB1344 PF07715 TonB-dependent Receptor Plug Domain YPTB1345 PF13417 Glutathione S-transferase, N-terminal domain YPTB1345 PF00043 Glutathione S-transferase, C-terminal domain YPTB1348 PF03180 NLPA lipoprotein YPTB1349 PF00005 ABC transporter YPTB1349 PF09383 NIL domain YPTB1350 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1351 PF00768 D-alanyl-D-alanine carboxypeptidase YPTB1351 PF07943 Penicillin-binding protein 5, C-terminal domain YPTB1353 PF00455 DeoR C terminal sensor domain YPTB1353 PF08220 DeoR-like helix-turn-helix domain YPTB1354 PF01791 DeoC/LacD family aldolase YPTB1355 PF01569 PAP2 superfamily YPTB1357 PF02080 TrkA-C domain YPTB1357 PF06826 Predicted Permease Membrane Region YPTB1358 PF00462 Glutaredoxin YPTB1359 PF07214 Protein of unknown function (DUF1418) YPTB1360 PF10722 Putative bacterial sensory transduction regulator YPTB1361 PF13416 Bacterial extracellular solute-binding protein YPTB1362 PF08402 TOBE domain YPTB1362 PF00005 ABC transporter YPTB1363 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1365 PF10767 Protein of unknown function (DUF2593) YPTB1366 PF05958 tRNA (Uracil-5-)-methyltransferase YPTB1367 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB1370 PF01032 FecCD transport family YPTB1371 PF00005 ABC transporter YPTB1372 PF03059 Nicotianamine synthase protein YPTB1373 PF10100 Staphylopine dehydrogenase YPTB1374 PF00892 EamA-like transporter family YPTB1375 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1376 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1377 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB1378 PF00005 ABC transporter YPTB1379 PF01817 Chorismate mutase type II YPTB1380 PF12883 Protein of unknown function (DUF3828) YPTB1381 PF01370 NAD dependent epimerase/dehydratase family YPTB1382 PF11066 Protein of unknown function (DUF2867) YPTB1382 PF13460 NAD(P)H-binding YPTB1383 PF01212 Beta-eliminating lyase YPTB1384 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB1384 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB1384 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB1385 PF00175 Oxidoreductase NAD-binding domain YPTB1385 PF00970 Oxidoreductase FAD-binding domain YPTB1385 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB1386 PF03063 Prismane/CO dehydrogenase family YPTB1387 PF03956 Lysine exporter LysO YPTB1388 PF11398 Protein of unknown function (DUF2813) YPTB1389 PF04393 Protein of unknown function (DUF535) YPTB1390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB1391 PF00005 ABC transporter YPTB1391 PF02687 FtsX-like permease family YPTB1391 PF12704 MacB-like periplasmic core domain YPTB1392 PF00313 'Cold-shock' DNA-binding domain YPTB1393 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPTB1394 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB1394 PF17871 AAA lid domain YPTB1394 PF02861 Clp amino terminal domain, pathogenicity island component YPTB1394 PF07724 AAA domain (Cdc48 subfamily) YPTB1394 PF00004 ATPase family associated with various cellular activities (AAA) YPTB1395 PF01176 Translation initiation factor 1A / IF-1 YPTB1396 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPTB1397 PF00664 ABC transporter transmembrane region YPTB1397 PF00005 ABC transporter YPTB1398 PF00664 ABC transporter transmembrane region YPTB1398 PF00005 ABC transporter YPTB1399 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB1400 PF01037 Lrp/AsnC ligand binding domain YPTB1401 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPTB1401 PF09397 Ftsk gamma domain YPTB1401 PF17854 FtsK alpha domain YPTB1401 PF01580 FtsK/SpoIIIE family YPTB1402 PF03548 Outer membrane lipoprotein carrier protein LolA YPTB1403 PF16193 AAA C-terminal domain YPTB1403 PF12002 MgsA AAA+ ATPase C terminal YPTB1403 PF00004 ATPase family associated with various cellular activities (AAA) YPTB1404 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTB1404 PF02403 Seryl-tRNA synthetase N-terminal domain YPTB1405 PF07690 Major Facilitator Superfamily YPTB1406 PF04055 Radical SAM superfamily YPTB1408 PF02901 Pyruvate formate lyase-like YPTB1408 PF01228 Glycine radical YPTB1409 PF01226 Formate/nitrite transporter YPTB1410 PF18381 YcaO cyclodehydratase C-terminal domain YPTB1410 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPTB1411 PF00710 Asparaginase, N-terminal YPTB1411 PF17763 Glutaminase/Asparaginase C-terminal domain YPTB1414 PF00266 Aminotransferase class-V YPTB1415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPTB1416 PF02224 Cytidylate kinase YPTB1417 PF00575 S1 RNA binding domain YPTB1418 PF00216 Bacterial DNA-binding protein YPTB1419 PF03772 Competence protein YPTB1419 PF00753 Metallo-beta-lactamase superfamily YPTB1420 PF00664 ABC transporter transmembrane region YPTB1420 PF00005 ABC transporter YPTB1421 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPTB1422 PF07063 Domain of unknown function (DUF1338) YPTB1423 PF00313 'Cold-shock' DNA-binding domain YPTB1424 PF03966 Trm112p-like protein YPTB1425 PF02348 Cytidylyltransferase YPTB1426 PF01636 Phosphotransferase enzyme family YPTB1428 PF17193 MukF C-terminal domain YPTB1428 PF17192 MukF middle domain YPTB1428 PF03882 MukF winged-helix domain YPTB1429 PF04288 MukE-like family YPTB1430 PF04310 MukB N-terminal YPTB1430 PF16330 MukB hinge domain YPTB1431 PF01471 Putative peptidoglycan binding domain YPTB1431 PF03734 L,D-transpeptidase catalytic domain YPTB1432 PF05951 Bacterial protein of unknown function (DUF882) YPTB1433 PF00753 Metallo-beta-lactamase superfamily YPTB1434 PF00155 Aminotransferase class I and II YPTB1435 PF00267 Gram-negative porin YPTB1436 PF00152 tRNA synthetases class II (D, K and N) YPTB1436 PF01336 OB-fold nucleic acid binding domain YPTB1437 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPTB1437 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPTB1438 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPTB1438 PF01433 Peptidase family M1 domain YPTB1438 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPTB1439 PF01180 Dihydroorotate dehydrogenase YPTB1440 PF07126 Cell-division protein ZapC YPTB1441 PF03476 MOSC N-terminal beta barrel domain YPTB1441 PF03473 MOSC domain YPTB1441 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB1442 PF10672 S-adenosylmethionine-dependent methyltransferase YPTB1442 PF01170 Putative RNA methylase family UPF0020 YPTB1442 PF02926 THUMP domain YPTB1443 PF00005 ABC transporter YPTB1443 PF16326 ABC transporter C-terminal domain YPTB1443 PF12848 ABC transporter YPTB1444 PF04403 Paraquat-inducible protein A YPTB1445 PF02470 MlaD protein YPTB1446 PF03886 ABC-type transport auxiliary lipoprotein component YPTB1448 PF04957 Ribosome modulation factor YPTB1449 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB1449 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB1450 PF07977 FabA-like domain YPTB1451 PF05362 Lon protease (S16) C-terminal proteolytic domain YPTB1451 PF13654 AAA domain YPTB1452 PF06303 MatP N-terminal domain YPTB1452 PF17414 MatP C-terminal ribbon-helix-helix domain YPTB1453 PF01389 OmpA-like transmembrane domain YPTB1453 PF00691 OmpA family YPTB1454 PF03846 Cell division inhibitor SulA YPTB1455 PF04993 TfoX N-terminal domain YPTB1455 PF04994 TfoX C-terminal domain YPTB1456 PF12805 FUSC-like inner membrane protein yccS YPTB1457 PF03733 Inner membrane component domain YPTB1458 PF00580 UvrD/REP helicase N-terminal domain YPTB1458 PF12462 DNA helicase IV / RNA helicase N terminal YPTB1458 PF13361 UvrD-like helicase C-terminal domain YPTB1459 PF02142 MGS-like domain YPTB1460 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPTB1461 PF13380 CoA binding domain YPTB1462 PF08755 Hemimethylated DNA-binding protein YccV like YPTB1463 PF17785 PUA-like domain YPTB1463 PF10672 S-adenosylmethionine-dependent methyltransferase YPTB1464 PF00708 Acylphosphatase YPTB1465 PF04358 DsrC like protein YPTB1469 PF08031 Berberine and berberine like YPTB1469 PF01565 FAD binding domain YPTB1472 PF07977 FabA-like domain YPTB1473 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB1473 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB1475 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPTB1475 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPTB1477 PF00378 Enoyl-CoA hydratase/isomerase YPTB1480 PF00550 Phosphopantetheine attachment site YPTB1481 PF00698 Acyl transferase domain YPTB1487 PF05736 OprF membrane domain YPTB1487 PF00691 OmpA family YPTB1489 PF07724 AAA domain (Cdc48 subfamily) YPTB1489 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB1489 PF17871 AAA lid domain YPTB1489 PF00004 ATPase family associated with various cellular activities (AAA) YPTB1508 PF00005 ABC transporter YPTB1508 PF12848 ABC transporter YPTB1510 PF00899 ThiF family YPTB1511 PF03453 MoeA N-terminal region (domain I and II) YPTB1511 PF03454 MoeA C-terminal region (domain IV) YPTB1511 PF00994 Probable molybdopterin binding domain YPTB1513 PF00005 ABC transporter YPTB1514 PF13533 Biotin-lipoyl like YPTB1516 PF00756 Putative esterase YPTB1517 PF00107 Zinc-binding dehydrogenase YPTB1517 PF08240 Alcohol dehydrogenase GroES-like domain YPTB1518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB1518 PF03466 LysR substrate binding domain YPTB1519 PF06779 Uncharacterised MFS-type transporter YbfB YPTB1520 PF01227 GTP cyclohydrolase I YPTB1521 PF04235 Protein of unknown function (DUF418) YPTB1522 PF13407 Periplasmic binding protein domain YPTB1523 PF00005 ABC transporter YPTB1524 PF02653 Branched-chain amino acid transport system / permease component YPTB1525 PF02698 DUF218 domain YPTB1526 PF03949 Malic enzyme, NAD binding domain YPTB1526 PF00390 Malic enzyme, N-terminal domain YPTB1527 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPTB1527 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPTB1528 PF04172 LrgB-like family YPTB1529 PF03788 LrgA family YPTB1530 PF07690 Major Facilitator Superfamily YPTB1534 PF09334 tRNA synthetases class I (M) YPTB1534 PF01588 Putative tRNA binding domain YPTB1535 PF10609 NUBPL iron-transfer P-loop NTPase YPTB1536 PF00485 Phosphoribulokinase / Uridine kinase family YPTB1537 PF00692 dUTPase YPTB1538 PF05170 AsmA family YPTB1539 PF00571 CBS domain YPTB1539 PF03471 Transporter associated domain YPTB1539 PF03741 Integral membrane protein TerC family YPTB1540 PF11575 FhuF 2Fe-2S C-terminal domain YPTB1540 PF06276 Ferric iron reductase FhuF-like transporter YPTB1541 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPTB1542 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPTB1544 PF06276 Ferric iron reductase FhuF-like transporter YPTB1544 PF04183 IucA / IucC family YPTB1545 PF00005 ABC transporter YPTB1546 PF01032 FecCD transport family YPTB1547 PF01032 FecCD transport family YPTB1548 PF01497 Periplasmic binding protein YPTB1549 PF00593 TonB dependent receptor YPTB1549 PF07715 TonB-dependent Receptor Plug Domain YPTB1549 PF07660 Secretin and TonB N terminus short domain YPTB1550 PF06276 Ferric iron reductase FhuF-like transporter YPTB1550 PF04183 IucA / IucC family YPTB1551 PF00483 Nucleotidyl transferase YPTB1552 PF00483 Nucleotidyl transferase YPTB1553 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPTB1553 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPTB1554 PF01797 Transposase IS200 like YPTB1555 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPTB1555 PF01502 Phosphoribosyl-AMP cyclohydrolase YPTB1556 PF00977 Histidine biosynthesis protein YPTB1557 PF00977 Histidine biosynthesis protein YPTB1558 PF00117 Glutamine amidotransferase class-I YPTB1559 PF00475 Imidazoleglycerol-phosphate dehydratase YPTB1560 PF00155 Aminotransferase class I and II YPTB1561 PF00815 Histidinol dehydrogenase YPTB1562 PF08029 HisG, C-terminal domain YPTB1562 PF01634 ATP phosphoribosyltransferase YPTB1563 PF01370 NAD dependent epimerase/dehydratase family YPTB1565 PF02653 Branched-chain amino acid transport system / permease component YPTB1566 PF00005 ABC transporter YPTB1567 PF00465 Iron-containing alcohol dehydrogenase YPTB1568 PF13520 Amino acid permease YPTB1569 PF00929 Exonuclease YPTB1569 PF08411 Exonuclease C-terminal YPTB1571 PF04363 Protein of unknown function (DUF496) YPTB1572 PF09134 Invasin, domain 3 YPTB1572 PF11924 Inverse autotransporter, beta-domain YPTB1572 PF02369 Bacterial Ig-like domain (group 1) YPTB1573 PF07690 Major Facilitator Superfamily YPTB1574 PF04134 Protein of unknown function, DUF393 YPTB1576 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB1577 PF13378 Enolase C-terminal domain-like YPTB1577 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPTB1578 PF01070 FMN-dependent dehydrogenase YPTB1579 PF00764 Arginosuccinate synthase YPTB1580 PF01554 MatE YPTB1582 PF01522 Polysaccharide deacetylase YPTB1584 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPTB1585 PF02796 Helix-turn-helix domain of resolvase YPTB1585 PF00665 Integrase core domain YPTB1586 PF01695 IstB-like ATP binding protein YPTB1591 PF00593 TonB dependent receptor YPTB1591 PF07715 TonB-dependent Receptor Plug Domain YPTB1592 PF00501 AMP-binding enzyme YPTB1592 PF13193 AMP-binding enzyme C-terminal domain YPTB1593 PF00975 Thioesterase domain YPTB1595 PF16197 Ketoacyl-synthetase C-terminal extension YPTB1595 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB1595 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB1595 PF00698 Acyl transferase domain YPTB1595 PF00550 Phosphopantetheine attachment site YPTB1595 PF00668 Condensation domain YPTB1596 PF08242 Methyltransferase domain YPTB1596 PF00501 AMP-binding enzyme YPTB1596 PF00668 Condensation domain YPTB1596 PF00550 Phosphopantetheine attachment site YPTB1598 PF00664 ABC transporter transmembrane region YPTB1598 PF08021 Siderophore-interacting FAD-binding domain YPTB1598 PF04954 Siderophore-interacting protein YPTB1598 PF00005 ABC transporter YPTB1599 PF00664 ABC transporter transmembrane region YPTB1599 PF00005 ABC transporter YPTB1600 PF07690 Major Facilitator Superfamily YPTB1601 PF00425 chorismate binding enzyme YPTB1603 PF00196 Bacterial regulatory proteins, luxR family YPTB1603 PF00072 Response regulator receiver domain YPTB1604 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPTB1606 PF03480 Bacterial extracellular solute-binding protein, family 7 YPTB1607 PF01648 4'-phosphopantetheinyl transferase superfamily YPTB1607 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPTB1608 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPTB1608 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPTB1609 PF01306 LacY proton/sugar symporter YPTB1610 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB1610 PF00356 Bacterial regulatory proteins, lacI family YPTB1611 PF06167 Glucose-regulated metallo-peptidase M90 YPTB1614 PF00664 ABC transporter transmembrane region YPTB1614 PF00005 ABC transporter YPTB1615 PF12833 Helix-turn-helix domain YPTB1616 PF10964 Protein of unknown function (DUF2766) YPTB1617 PF13996 YobH-like protein YPTB1618 PF13974 YebO-like protein YPTB1621 PF00324 Amino acid permease YPTB1622 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPTB1623 PF10736 Protein of unknown function (DUF2627) YPTB1624 PF00313 'Cold-shock' DNA-binding domain YPTB1626 PF13847 Methyltransferase domain YPTB1628 PF05231 MASE1 YPTB1628 PF13426 PAS domain YPTB1628 PF00990 Diguanylate cyclase, GGDEF domain YPTB1628 PF08448 PAS fold YPTB1628 PF08447 PAS fold YPTB1628 PF00563 EAL domain YPTB1629 PF07715 TonB-dependent Receptor Plug Domain YPTB1629 PF00593 TonB dependent receptor YPTB1630 PF02659 Putative manganese efflux pump YPTB1631 PF06173 Protein of unknown function (DUF986) YPTB1632 PF03613 PTS system mannose/fructose/sorbose family IID component YPTB1633 PF03609 PTS system sorbose-specific iic component YPTB1634 PF03610 PTS system fructose IIA component YPTB1634 PF03830 PTS system sorbose subfamily IIB component YPTB1635 PF03471 Transporter associated domain YPTB1635 PF03741 Integral membrane protein TerC family YPTB1636 PF01047 MarR family YPTB1637 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB1638 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB1639 PF00171 Aldehyde dehydrogenase family YPTB1640 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPTB1641 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPTB1642 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB1643 PF03328 HpcH/HpaI aldolase/citrate lyase family YPTB1644 PF07690 Major Facilitator Superfamily YPTB1645 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPTB1645 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPTB1646 PF01613 Flavin reductase like domain YPTB1647 PF03315 Serine dehydratase beta chain YPTB1647 PF03313 Serine dehydratase alpha chain YPTB1648 PF00293 NUDIX domain YPTB1649 PF04715 Anthranilate synthase component I, N terminal region YPTB1649 PF00425 chorismate binding enzyme YPTB1650 PF03701 Uncharacterised protein family (UPF0181) YPTB1651 PF02222 ATP-grasp domain YPTB1652 PF00271 Helicase conserved C-terminal domain YPTB1652 PF00270 DEAD/DEAH box helicase YPTB1652 PF03880 DbpA RNA binding domain YPTB1653 PF07130 YebG protein YPTB1655 PF13995 YebF-like protein YPTB1656 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPTB1656 PF00326 Prolyl oligopeptidase family YPTB1657 PF00561 alpha/beta hydrolase fold YPTB1658 PF06440 DNA polymerase III, theta subunit YPTB1659 PF00210 Ferritin-like domain YPTB1660 PF04234 CopC domain YPTB1662 PF10709 Protein of unknown function (DUF2511) YPTB1665 PF01312 FlhB HrpN YscU SpaS Family YPTB1666 PF00771 FHIPEP family YPTB1667 PF06366 Flagellar protein FlhE YPTB1668 PF09134 Invasin, domain 3 YPTB1668 PF07979 Intimin C-type lectin domain YPTB1668 PF11924 Inverse autotransporter, beta-domain YPTB1668 PF02369 Bacterial Ig-like domain (group 1) YPTB1669 PF05130 FlgN protein YPTB1670 PF04316 Anti-sigma-28 factor, FlgM YPTB1671 PF17656 FlgA N-terminal domain YPTB1671 PF13144 Chaperone for flagella basal body P-ring formation YPTB1672 PF00460 Flagella basal body rod protein YPTB1673 PF00460 Flagella basal body rod protein YPTB1673 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB1674 PF13861 FlgD Tudor-like domain YPTB1674 PF03963 Flagellar hook capping protein - N-terminal region YPTB1674 PF13860 FlgD Ig-like domain YPTB1675 PF07559 Flagellar basal body protein FlaE YPTB1675 PF00460 Flagella basal body rod protein YPTB1675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB1676 PF00460 Flagella basal body rod protein YPTB1676 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB1677 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB1677 PF00460 Flagella basal body rod protein YPTB1678 PF02107 Flagellar L-ring protein YPTB1679 PF02119 Flagellar P-ring protein YPTB1680 PF10135 Rod binding protein YPTB1680 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPTB1681 PF00460 Flagella basal body rod protein YPTB1681 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB1682 PF00669 Bacterial flagellin N-terminal helical region YPTB1683 PF04198 Putative sugar-binding domain YPTB1684 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB1685 PF02653 Branched-chain amino acid transport system / permease component YPTB1686 PF13407 Periplasmic binding protein domain YPTB1687 PF00005 ABC transporter YPTB1688 PF02653 Branched-chain amino acid transport system / permease component YPTB1689 PF00294 pfkB family carbohydrate kinase YPTB1691 PF01311 Bacterial export proteins, family 1 YPTB1692 PF01313 Bacterial export proteins, family 3 YPTB1693 PF00813 FliP family YPTB1694 PF04347 Flagellar biosynthesis protein, FliO YPTB1695 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTB1695 PF16973 Flagellar motor switch protein FliN N-terminal YPTB1696 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTB1696 PF02154 Flagellar motor switch protein FliM YPTB1697 PF03748 Flagellar basal body-associated protein FliL YPTB1698 PF02120 Flagellar hook-length control protein FliK YPTB1699 PF02050 Flagellar FliJ protein YPTB1700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB1700 PF18269 T3SS EscN ATPase C-terminal domain YPTB1701 PF02108 Flagellar assembly protein FliH YPTB1702 PF01706 FliG C-terminal domain YPTB1702 PF14841 FliG middle domain YPTB1702 PF14842 FliG N-terminal domain YPTB1703 PF08345 Flagellar M-ring protein C-terminal YPTB1703 PF01514 Secretory protein of YscJ/FliF family YPTB1704 PF02049 Flagellar hook-basal body complex protein FliE YPTB1708 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTB1709 PF01966 HD domain YPTB1710 PF12833 Helix-turn-helix domain YPTB1711 PF05400 Flagellar protein FliT YPTB1712 PF02561 Flagellar protein FliS YPTB1713 PF07195 Flagellar hook-associated protein 2 C-terminus YPTB1713 PF07196 Flagellin hook IN motif YPTB1713 PF02465 Flagellar hook-associated protein 2 N-terminus YPTB1714 PF00669 Bacterial flagellin N-terminal helical region YPTB1714 PF08884 Flagellin D3 domain YPTB1714 PF00700 Bacterial flagellin C-terminal helical region YPTB1715 PF04545 Sigma-70, region 4 YPTB1715 PF04539 Sigma-70 region 3 YPTB1715 PF04542 Sigma-70 region 2 YPTB1716 PF02899 Phage integrase, N-terminal SAM-like domain YPTB1717 PF00291 Pyridoxal-phosphate dependent enzyme YPTB1723 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPTB1723 PF01619 Proline dehydrogenase YPTB1723 PF14850 DNA-binding domain of Proline dehydrogenase YPTB1723 PF00171 Aldehyde dehydrogenase family YPTB1724 PF00474 Sodium:solute symporter family YPTB1725 PF03239 Iron permease FTR1 family YPTB1726 PF13473 Cupredoxin-like domain YPTB1726 PF09375 Imelysin YPTB1727 PF04261 Dyp-type peroxidase family YPTB1728 PF03358 NADPH-dependent FMN reductase YPTB1729 PF01344 Kelch motif YPTB1730 PF00324 Amino acid permease YPTB1731 PF13505 Outer membrane protein beta-barrel domain YPTB1733 PF06942 GlpM protein YPTB1734 PF10769 Protein of unknown function (DUF2594) YPTB1735 PF00072 Response regulator receiver domain YPTB1735 PF00196 Bacterial regulatory proteins, luxR family YPTB1736 PF08459 UvrC Helix-hairpin-helix N-terminal YPTB1736 PF02151 UvrB/uvrC motif YPTB1736 PF01541 GIY-YIG catalytic domain YPTB1737 PF01066 CDP-alcohol phosphatidyltransferase YPTB1738 PF04606 Ogr/Delta-like zinc finger YPTB1766 PF05840 Bacteriophage replication gene A protein (GPA) YPTB1769 PF06892 Phage regulatory protein CII (CP76) YPTB1771 PF07022 Bacteriophage CI repressor helix-turn-helix domain YPTB1771 PF16452 Bacteriophage CI repressor C-terminal domain YPTB1774 PF02899 Phage integrase, N-terminal SAM-like domain YPTB1774 PF00589 Phage integrase family YPTB1790 PF00717 Peptidase S24-like YPTB1790 PF01381 Helix-turn-helix YPTB1795 PF04381 Putative exonuclease, RdgC YPTB1797 PF01555 DNA methylase YPTB1798 PF05869 DNA N-6-adenine-methyltransferase (Dam) YPTB1804 PF04971 Bacteriophage P21 holin S YPTB1805 PF00959 Phage lysozyme YPTB1808 PF02796 Helix-turn-helix domain of resolvase YPTB1808 PF00665 Integrase core domain YPTB1809 PF01695 IstB-like ATP binding protein YPTB1820 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPTB1834 PF04606 Ogr/Delta-like zinc finger YPTB1841 PF17482 Phage tail sheath C-terminal domain YPTB1841 PF04984 Phage tail sheath protein subtilisin-like domain YPTB1862 PF05840 Bacteriophage replication gene A protein (GPA) YPTB1863 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPTB1864 PF00929 Exonuclease YPTB1875 PF02899 Phage integrase, N-terminal SAM-like domain YPTB1875 PF00589 Phage integrase family YPTB1881 PF05638 Type VI secretion system effector, Hcp YPTB1886 PF13649 Methyltransferase domain YPTB1891 PF01527 Transposase YPTB1905 PF00872 Transposase, Mutator family YPTB1911 PF00480 ROK family YPTB1912 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB1912 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB1914 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1915 PF00528 Binding-protein-dependent transport system inner membrane component YPTB1916 PF00005 ABC transporter YPTB1916 PF08402 TOBE domain YPTB1917 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB1917 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB1919 PF00577 Outer membrane usher protein YPTB1919 PF13953 PapC C-terminal domain YPTB1919 PF13954 PapC N-terminal domain YPTB1920 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB1920 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB1922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB1922 PF00072 Response regulator receiver domain YPTB1922 PF00512 His Kinase A (phospho-acceptor) domain YPTB1922 PF01627 Hpt domain YPTB1922 PF00989 PAS fold YPTB1922 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB1923 PF00072 Response regulator receiver domain YPTB1923 PF00196 Bacterial regulatory proteins, luxR family YPTB1924 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPTB1924 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPTB1925 PF01575 MaoC like domain YPTB1926 PF03328 HpcH/HpaI aldolase/citrate lyase family YPTB1927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB1927 PF03466 LysR substrate binding domain YPTB1931 PF04909 Amidohydrolase YPTB1933 PF02508 Rnf-Nqr subunit, membrane protein YPTB1934 PF00155 Aminotransferase class I and II YPTB1935 PF00324 Amino acid permease YPTB1936 PF00455 DeoR C terminal sensor domain YPTB1936 PF08220 DeoR-like helix-turn-helix domain YPTB1937 PF04960 Glutaminase YPTB1939 PF03239 Iron permease FTR1 family YPTB1940 PF10634 Fe2+ transport protein YPTB1942 PF02687 FtsX-like permease family YPTB1942 PF12704 MacB-like periplasmic core domain YPTB1942 PF00005 ABC transporter YPTB1944 PF12704 MacB-like periplasmic core domain YPTB1944 PF02687 FtsX-like permease family YPTB1944 PF00005 ABC transporter YPTB1945 PF00578 AhpC/TSA family YPTB1947 PF09313 Domain of unknown function (DUF1971) YPTB1947 PF03848 Tellurite resistance protein TehB YPTB1948 PF00557 Metallopeptidase family M24 YPTB1950 PF14883 Hypothetical glycosyl hydrolase family 13 YPTB1950 PF01522 Polysaccharide deacetylase YPTB1951 PF00535 Glycosyl transferase family 2 YPTB1952 PF13994 PgaD-like protein YPTB1955 PF02562 PhoH-like protein YPTB1956 PF01699 Sodium/calcium exchanger protein YPTB1957 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB1957 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPTB1957 PF00672 HAMP domain YPTB1957 PF07730 Histidine kinase YPTB1958 PF00155 Aminotransferase class I and II YPTB1958 PF00392 Bacterial regulatory proteins, gntR family YPTB1959 PF00202 Aminotransferase class-III YPTB1960 PF04958 Arginine N-succinyltransferase beta subunit YPTB1961 PF00171 Aldehyde dehydrogenase family YPTB1962 PF04996 Succinylarginine dihydrolase YPTB1963 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPTB1964 PF00267 Gram-negative porin YPTB1966 PF01979 Amidohydrolase family YPTB1967 PF00392 Bacterial regulatory proteins, gntR family YPTB1967 PF07702 UTRA domain YPTB1968 PF01979 Amidohydrolase family YPTB1971 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPTB1971 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPTB1972 PF01370 NAD dependent epimerase/dehydratase family YPTB1984 PF08242 Methyltransferase domain YPTB1992 PF00672 HAMP domain YPTB1992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB1992 PF00512 His Kinase A (phospho-acceptor) domain YPTB1993 PF00072 Response regulator receiver domain YPTB1993 PF00486 Transcriptional regulatory protein, C terminal YPTB1994 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPTB1998 PF01926 50S ribosome-binding GTPase YPTB1998 PF06071 Protein of unknown function (DUF933) YPTB1999 PF01195 Peptidyl-tRNA hydrolase YPTB2000 PF10762 Protein of unknown function (DUF2583) YPTB2001 PF14572 Phosphoribosyl synthetase-associated domain YPTB2001 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPTB2002 PF00288 GHMP kinases N terminal domain YPTB2002 PF08544 GHMP kinases C terminal YPTB2003 PF03550 Outer membrane lipoprotein LolB YPTB2004 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPTB2004 PF01488 Shikimate / quinate 5-dehydrogenase YPTB2004 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPTB2005 PF03462 PCRF domain YPTB2005 PF00472 RF-1 domain YPTB2006 PF13847 Methyltransferase domain YPTB2006 PF17827 PrmC N-terminal domain YPTB2007 PF04247 Invasion gene expression up-regulator, SirB YPTB2008 PF13369 Transglutaminase-like superfamily YPTB2009 PF00793 DAHP synthetase I family YPTB2010 PF01797 Transposase IS200 like YPTB2011 PF01740 STAS domain YPTB2011 PF00916 Sulfate permease family YPTB2012 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB2015 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2016 PF08402 TOBE domain YPTB2016 PF00005 ABC transporter YPTB2017 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB2018 PF00480 ROK family YPTB2018 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPTB2019 PF02811 PHP domain YPTB2020 PF02613 Nitrate reductase delta subunit YPTB2021 PF07273 Protein of unknown function (DUF1439) YPTB2022 PF07690 Major Facilitator Superfamily YPTB2023 PF13302 Acetyltransferase (GNAT) domain YPTB2024 PF04337 Protein of unknown function, DUF480 YPTB2025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB2026 PF03023 Lipid II flippase MurJ YPTB2027 PF08479 POTRA domain, ShlB-type YPTB2027 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB2027 PF17287 POTRA domain YPTB2028 PF05860 haemagglutination activity domain YPTB2028 PF13332 Hemagglutinin repeat YPTB2029 PF00750 tRNA synthetases class I (R) YPTB2029 PF03485 Arginyl tRNA synthetase N terminal domain YPTB2029 PF05746 DALR anticodon binding domain YPTB2030 PF06185 YecM protein YPTB2031 PF03932 CutC family YPTB2032 PF08003 Protein of unknown function (DUF1698) YPTB2033 PF13649 Methyltransferase domain YPTB2034 PF01124 MAPEG family YPTB2035 PF01904 Protein of unknown function DUF72 YPTB2036 PF00152 tRNA synthetases class II (D, K and N) YPTB2036 PF02938 GAD domain YPTB2036 PF01336 OB-fold nucleic acid binding domain YPTB2037 PF00293 NUDIX domain YPTB2038 PF01709 Transcriptional regulator YPTB2039 PF02075 Crossover junction endodeoxyribonuclease RuvC YPTB2040 PF01330 RuvA N terminal domain YPTB2040 PF07499 RuvA, C-terminal domain YPTB2041 PF05491 RuvB C-terminal winged helix domain YPTB2041 PF17864 RuvB AAA lid domain YPTB2041 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPTB2042 PF00950 ABC 3 transport family YPTB2043 PF00005 ABC transporter YPTB2044 PF01297 Zinc-uptake complex component A periplasmic YPTB2045 PF08525 Opacity-associated protein A N-terminal motif YPTB2045 PF01476 LysM domain YPTB2045 PF01551 Peptidase family M23 YPTB2046 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTB2047 PF00224 Pyruvate kinase, barrel domain YPTB2047 PF02887 Pyruvate kinase, alpha/beta domain YPTB2048 PF01380 SIS domain YPTB2048 PF01418 Helix-turn-helix domain, rpiR family YPTB2049 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPTB2049 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPTB2050 PF01081 KDPG and KHG aldolase YPTB2051 PF00893 Small Multidrug Resistance protein YPTB2052 PF00893 Small Multidrug Resistance protein YPTB2053 PF01042 Endoribonuclease L-PSP YPTB2054 PF13307 Helicase C-terminal domain YPTB2054 PF04851 Type III restriction enzyme, res subunit YPTB2055 PF00814 Glycoprotease family YPTB2056 PF03843 Outer membrane lipoprotein Slp family YPTB2057 PF13193 AMP-binding enzyme C-terminal domain YPTB2057 PF00501 AMP-binding enzyme YPTB2058 PF00570 HRDC domain YPTB2058 PF01612 3'-5' exonuclease YPTB2059 PF03776 Septum formation topological specificity factor MinE YPTB2060 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPTB2061 PF05209 Septum formation inhibitor MinC, N-terminal domain YPTB2061 PF03775 Septum formation inhibitor MinC, C-terminal domain YPTB2062 PF05166 YcgL domain YPTB2063 PF13406 Transglycosylase SLT domain YPTB2064 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB2065 PF03692 Putative zinc- or iron-chelating domain YPTB2067 PF00266 Aminotransferase class-V YPTB2070 PF02600 Disulfide bond formation protein DsbB YPTB2071 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPTB2072 PF07840 FadR C-terminal domain YPTB2072 PF00392 Bacterial regulatory proteins, gntR family YPTB2073 PF04293 SpoVR like protein YPTB2074 PF01266 FAD dependent oxidoreductase YPTB2075 PF07690 Major Facilitator Superfamily YPTB2076 PF02678 Pirin YPTB2076 PF05726 Pirin C-terminal cupin domain YPTB2077 PF03466 LysR substrate binding domain YPTB2077 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2079 PF04285 Protein of unknown function (DUF444) YPTB2080 PF08298 PrkA AAA domain YPTB2080 PF06798 PrkA serine protein kinase C-terminal domain YPTB2081 PF06629 MltA-interacting protein MipA YPTB2082 PF01263 Aldose 1-epimerase YPTB2083 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTB2083 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPTB2084 PF01641 SelR domain YPTB2085 PF07023 Protein of unknown function (DUF1315) YPTB2086 PF00857 Isochorismatase family YPTB2087 PF17763 Glutaminase/Asparaginase C-terminal domain YPTB2087 PF00710 Asparaginase, N-terminal YPTB2088 PF01343 Peptidase family S49 YPTB2089 PF00881 Nitroreductase family YPTB2090 PF02769 AIR synthase related protein, C-terminal domain YPTB2090 PF00586 AIR synthase related protein, N-terminal domain YPTB2091 PF01751 Toprim domain YPTB2091 PF01131 DNA topoisomerase YPTB2092 PF07383 Protein of unknown function (DUF1496) YPTB2093 PF00293 NUDIX domain YPTB2094 PF03372 Endonuclease/Exonuclease/phosphatase family YPTB2095 PF03466 LysR substrate binding domain YPTB2095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2096 PF00872 Transposase, Mutator family YPTB2097 PF01842 ACT domain YPTB2097 PF00551 Formyl transferase YPTB2098 PF02810 SEC-C motif YPTB2099 PF00072 Response regulator receiver domain YPTB2100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPTB2100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPTB2100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPTB2101 PF00816 H-NS histone family YPTB2102 PF00265 Thymidine kinase YPTB2103 PF00465 Iron-containing alcohol dehydrogenase YPTB2103 PF00171 Aldehyde dehydrogenase family YPTB2104 PF01914 MarC family integral membrane protein YPTB2105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB2106 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2107 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2107 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB2108 PF00005 ABC transporter YPTB2108 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB2109 PF00005 ABC transporter YPTB2109 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB2110 PF04269 Protein of unknown function, DUF440 YPTB2111 PF13091 PLD-like domain YPTB2111 PF13396 Phospholipase_D-nuclease N-terminal YPTB2113 PF13505 Outer membrane protein beta-barrel domain YPTB2116 PF03795 YCII-related domain YPTB2117 PF03544 Gram-negative bacterial TonB protein C-terminal YPTB2118 PF03061 Thioesterase superfamily YPTB2119 PF04279 Intracellular septation protein A YPTB2123 PF03922 OmpW family YPTB2125 PF00290 Tryptophan synthase alpha chain YPTB2126 PF00291 Pyridoxal-phosphate dependent enzyme YPTB2127 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPTB2127 PF00218 Indole-3-glycerol phosphate synthase YPTB2128 PF02885 Glycosyl transferase family, helical bundle domain YPTB2128 PF00591 Glycosyl transferase family, a/b domain YPTB2129 PF00117 Glutamine amidotransferase class-I YPTB2130 PF00425 chorismate binding enzyme YPTB2130 PF04715 Anthranilate synthase component I, N terminal region YPTB2133 PF02811 PHP domain YPTB2134 PF01300 Telomere recombination YPTB2135 PF01479 S4 domain YPTB2135 PF00849 RNA pseudouridylate synthase YPTB2136 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPTB2137 PF00106 short chain dehydrogenase YPTB2138 PF08496 Peptidase family S49 N-terminal YPTB2138 PF01343 Peptidase family S49 YPTB2139 PF10692 Protein of unknown function (DUF2498) YPTB2140 PF01751 Toprim domain YPTB2140 PF01396 Topoisomerase DNA binding C4 zinc finger YPTB2140 PF08272 Topoisomerase I zinc-ribbon-like YPTB2140 PF01131 DNA topoisomerase YPTB2141 PF03466 LysR substrate binding domain YPTB2141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2143 PF00330 Aconitase family (aconitate hydratase) YPTB2143 PF00694 Aconitase C-terminal domain YPTB2144 PF00925 GTP cyclohydrolase II YPTB2145 PF01569 PAP2 superfamily YPTB2146 PF06305 Lipopolysaccharide assembly protein A domain YPTB2147 PF18073 Rubredoxin metal binding domain YPTB2149 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPTB2150 PF01253 Translation initiation factor SUI1 YPTB2151 PF05433 Glycine zipper 2TM domain YPTB2152 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB2154 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPTB2155 PF04328 Selenoprotein, putative YPTB2156 PF02554 Carbon starvation protein CstA YPTB2156 PF13722 5TM C-terminal transporter carbon starvation CstA YPTB2157 PF08206 Ribonuclease B OB domain YPTB2157 PF00773 RNB domain YPTB2157 PF00575 S1 RNA binding domain YPTB2157 PF17876 Cold shock domain YPTB2158 PF07690 Major Facilitator Superfamily YPTB2159 PF01370 NAD dependent epimerase/dehydratase family YPTB2160 PF10576 Iron-sulfur binding domain of endonuclease III YPTB2160 PF00633 Helix-hairpin-helix motif YPTB2160 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTB2161 PF02508 Rnf-Nqr subunit, membrane protein YPTB2162 PF04205 FMN-binding domain YPTB2163 PF03116 NQR2, RnfD, RnfE family YPTB2164 PF12833 Helix-turn-helix domain YPTB2164 PF06445 GyrI-like small molecule binding domain YPTB2165 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPTB2165 PF13237 4Fe-4S dicluster domain YPTB2165 PF13375 RnfC Barrel sandwich hybrid domain YPTB2165 PF10531 SLBB domain YPTB2166 PF04060 Putative Fe-S cluster YPTB2167 PF02508 Rnf-Nqr subunit, membrane protein YPTB2168 PF10754 Protein of unknown function (DUF2569) YPTB2169 PF00005 ABC transporter YPTB2169 PF03412 Peptidase C39 family YPTB2169 PF00664 ABC transporter transmembrane region YPTB2170 PF13533 Biotin-lipoyl like YPTB2171 PF03412 Peptidase C39 family YPTB2171 PF00005 ABC transporter YPTB2171 PF00664 ABC transporter transmembrane region YPTB2172 PF02610 L-arabinose isomerase YPTB2172 PF11762 L-arabinose isomerase C-terminal domain YPTB2173 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB2174 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB2175 PF00005 ABC transporter YPTB2176 PF02653 Branched-chain amino acid transport system / permease component YPTB2177 PF12833 Helix-turn-helix domain YPTB2177 PF02311 AraC-like ligand binding domain YPTB2178 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB2178 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB2179 PF13593 SBF-like CPA transporter family (DUF4137) YPTB2180 PF00962 Adenosine/AMP deaminase YPTB2184 PF06097 Bacterial protein of unknown function (DUF945) YPTB2185 PF01238 Phosphomannose isomerase type I YPTB2186 PF10415 Fumarase C C-terminus YPTB2186 PF00206 Lyase YPTB2187 PF05472 DNA replication terminus site-binding protein (Ter protein) YPTB2188 PF07690 Major Facilitator Superfamily YPTB2189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2189 PF03466 LysR substrate binding domain YPTB2190 PF00480 ROK family YPTB2192 PF00654 Voltage gated chloride channel YPTB2193 PF06649 Protein of unknown function (DUF1161) YPTB2194 PF06932 Protein of unknown function (DUF1283) YPTB2195 PF00106 short chain dehydrogenase YPTB2196 PF00158 Sigma-54 interaction domain YPTB2196 PF01590 GAF domain YPTB2196 PF02954 Bacterial regulatory protein, Fis family YPTB2197 PF00171 Aldehyde dehydrogenase family YPTB2199 PF00892 EamA-like transporter family YPTB2200 PF00155 Aminotransferase class I and II YPTB2204 PF13407 Periplasmic binding protein domain YPTB2205 PF02653 Branched-chain amino acid transport system / permease component YPTB2206 PF00005 ABC transporter YPTB2208 PF09084 NMT1/THI5 like YPTB2209 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2210 PF00005 ABC transporter YPTB2211 PF01048 Phosphorylase superfamily YPTB2211 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPTB2216 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB2216 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB2216 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB2217 PF01842 ACT domain YPTB2218 PF13419 Haloacid dehalogenase-like hydrolase YPTB2220 PF00245 Alkaline phosphatase YPTB2221 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPTB2221 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTB2222 PF00027 Cyclic nucleotide-binding domain YPTB2222 PF13545 Crp-like helix-turn-helix domain YPTB2223 PF00582 Universal stress protein family YPTB2224 PF02233 NAD(P) transhydrogenase beta subunit YPTB2225 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPTB2225 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPTB2225 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPTB2227 PF07338 Protein of unknown function (DUF1471) YPTB2228 PF13520 Amino acid permease YPTB2230 PF00486 Transcriptional regulatory protein, C terminal YPTB2230 PF00072 Response regulator receiver domain YPTB2231 PF00672 HAMP domain YPTB2231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB2231 PF00512 His Kinase A (phospho-acceptor) domain YPTB2232 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPTB2233 PF18807 Tripartite Tc toxins repeat YPTB2233 PF14431 YwqJ-like deaminase YPTB2234 PF04264 YceI-like domain YPTB2235 PF01292 Prokaryotic cytochrome b561 YPTB2238 PF00089 Trypsin YPTB2241 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPTB2241 PF00270 DEAD/DEAH box helicase YPTB2241 PF11898 Domain of unknown function (DUF3418) YPTB2241 PF04408 Helicase associated domain (HA2) YPTB2241 PF00271 Helicase conserved C-terminal domain YPTB2242 PF02525 Flavodoxin-like fold YPTB2243 PF00325 Bacterial regulatory proteins, crp family YPTB2243 PF04198 Putative sugar-binding domain YPTB2244 PF08125 Mannitol dehydrogenase C-terminal domain YPTB2244 PF01232 Mannitol dehydrogenase Rossmann domain YPTB2245 PF07027 Protein of unknown function (DUF1318) YPTB2246 PF13617 YnbE-like lipoprotein YPTB2247 PF11739 Dicarboxylate transport YPTB2248 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB2248 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB2249 PF03724 META domain YPTB2250 PF03891 Domain of unknown function (DUF333) YPTB2251 PF02308 MgtC family YPTB2252 PF00893 Small Multidrug Resistance protein YPTB2253 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPTB2253 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB2253 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPTB2253 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPTB2253 PF10371 Domain of unknown function YPTB2254 PF01171 PP-loop family YPTB2255 PF07859 alpha/beta hydrolase fold YPTB2255 PF13472 GDSL-like Lipase/Acylhydrolase family YPTB2257 PF01544 CorA-like Mg2+ transporter protein YPTB2258 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB2259 PF00246 Zinc carboxypeptidase YPTB2260 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPTB2260 PF13378 Enolase C-terminal domain-like YPTB2261 PF08534 Redoxin YPTB2262 PF00158 Sigma-54 interaction domain YPTB2262 PF18024 Helix-turn-helix domain YPTB2265 PF05128 Domain of unknown function (DUF697) YPTB2266 PF04317 YcjX-like family, DUF463 YPTB2268 PF04024 PspC domain YPTB2269 PF06667 Phage shock protein B YPTB2270 PF04012 PspA/IM30 family YPTB2271 PF00158 Sigma-54 interaction domain YPTB2271 PF02954 Bacterial regulatory protein, Fis family YPTB2272 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB2273 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2274 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2274 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB2275 PF00005 ABC transporter YPTB2275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB2276 PF00005 ABC transporter YPTB2278 PF00854 POT family YPTB2279 PF04893 Yip1 domain YPTB2280 PF11656 YjbD family (DUF3811) YPTB2281 PF00043 Glutathione S-transferase, C-terminal domain YPTB2281 PF02798 Glutathione S-transferase, N-terminal domain YPTB2282 PF08543 Phosphomethylpyrimidine kinase YPTB2283 PF00579 tRNA synthetases class I (W and Y) YPTB2283 PF01479 S4 domain YPTB2284 PF01243 Pyridoxamine 5'-phosphate oxidase YPTB2284 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPTB2285 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPTB2286 PF03702 Anhydro-N-acetylmuramic acid kinase YPTB2287 PF05433 Glycine zipper 2TM domain YPTB2288 PF01047 MarR family YPTB2289 PF00248 Aldo/keto reductase family YPTB2290 PF06945 Protein of unknown function (DUF1289) YPTB2291 PF00884 Sulfatase YPTB2291 PF08019 Phosphoethanolamine transferase EptA/EptB YPTB2292 PF16925 Tetracyclin repressor-like, C-terminal domain YPTB2292 PF00440 Bacterial regulatory proteins, tetR family YPTB2293 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTB2294 PF14431 YwqJ-like deaminase YPTB2294 PF18807 Tripartite Tc toxins repeat YPTB2295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPTB2296 PF00929 Exonuclease YPTB2297 PF00462 Glutaredoxin YPTB2298 PF00877 NlpC/P60 family YPTB2299 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPTB2299 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPTB2300 PF00356 Bacterial regulatory proteins, lacI family YPTB2301 PF03466 LysR substrate binding domain YPTB2301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2302 PF07690 Major Facilitator Superfamily YPTB2304 PF00677 Lumazine binding domain YPTB2305 PF01554 MatE YPTB2306 PF02887 Pyruvate kinase, alpha/beta domain YPTB2306 PF00224 Pyruvate kinase, barrel domain YPTB2307 PF04728 Lipoprotein leucine-zipper YPTB2308 PF01476 LysM domain YPTB2308 PF03734 L,D-transpeptidase catalytic domain YPTB2308 PF17969 L,D-transpeptidase C-terminal domain YPTB2309 PF02657 Fe-S metabolism associated domain YPTB2310 PF00266 Aminotransferase class-V YPTB2311 PF01458 Uncharacterized protein family (UPF0051) YPTB2312 PF00005 ABC transporter YPTB2313 PF01458 Uncharacterized protein family (UPF0051) YPTB2314 PF01521 Iron-sulphur cluster biosynthesis YPTB2315 PF03061 Thioesterase superfamily YPTB2316 PF13183 4Fe-4S dicluster domain YPTB2316 PF02913 FAD linked oxidases, C-terminal domain YPTB2316 PF01565 FAD binding domain YPTB2317 PF01594 AI-2E family transporter YPTB2318 PF02896 PEP-utilising enzyme, TIM barrel domain YPTB2318 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPTB2318 PF00391 PEP-utilising enzyme, mobile domain YPTB2319 PF03618 Kinase/pyrophosphorylase YPTB2320 PF00793 DAHP synthetase I family YPTB2321 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPTB2322 PF03099 Biotin/lipoate A/B protein ligase family YPTB2322 PF10437 Bacterial lipoate protein ligase C-terminus YPTB2323 PF00877 NlpC/P60 family YPTB2325 PF00892 EamA-like transporter family YPTB2326 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPTB2327 PF01522 Polysaccharide deacetylase YPTB2328 PF01370 NAD dependent epimerase/dehydratase family YPTB2328 PF02911 Formyl transferase, C-terminal domain YPTB2328 PF00551 Formyl transferase YPTB2329 PF00535 Glycosyl transferase family 2 YPTB2330 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTB2331 PF00005 ABC transporter YPTB2332 PF00255 Glutathione peroxidase YPTB2333 PF01032 FecCD transport family YPTB2335 PF00216 Bacterial DNA-binding protein YPTB2336 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPTB2336 PF01588 Putative tRNA binding domain YPTB2336 PF03147 Ferredoxin-fold anticodon binding domain YPTB2336 PF03484 tRNA synthetase B5 domain YPTB2336 PF03483 B3/4 domain YPTB2337 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPTB2337 PF01409 tRNA synthetases class II core domain (F) YPTB2339 PF00453 Ribosomal protein L20 YPTB2340 PF01632 Ribosomal protein L35 YPTB2341 PF05198 Translation initiation factor IF-3, N-terminal domain YPTB2341 PF00707 Translation initiation factor IF-3, C-terminal domain YPTB2342 PF02824 TGS domain YPTB2342 PF03129 Anticodon binding domain YPTB2342 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTB2342 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPTB2343 PF13619 KTSC domain YPTB2345 PF01914 MarC family integral membrane protein YPTB2346 PF01464 Transglycosylase SLT domain YPTB2347 PF01297 Zinc-uptake complex component A periplasmic YPTB2348 PF00005 ABC transporter YPTB2349 PF00950 ABC 3 transport family YPTB2350 PF00950 ABC 3 transport family YPTB2353 PF14002 YniB-like protein YPTB2354 PF13419 Haloacid dehalogenase-like hydrolase YPTB2355 PF07883 Cupin domain YPTB2356 PF04962 KduI/IolB family YPTB2358 PF06917 Periplasmic pectate lyase YPTB2359 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2360 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2361 PF00005 ABC transporter YPTB2361 PF17912 MalK OB fold domain YPTB2361 PF03459 TOBE domain YPTB2362 PF01547 Bacterial extracellular solute-binding protein YPTB2363 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPTB2364 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPTB2366 PF01510 N-acetylmuramoyl-L-alanine amidase YPTB2367 PF09339 IclR helix-turn-helix domain YPTB2367 PF01614 Bacterial transcriptional regulator YPTB2368 PF14583 Oligogalacturonate lyase YPTB2369 PF07690 Major Facilitator Superfamily YPTB2370 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB2370 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB2372 PF13954 PapC N-terminal domain YPTB2372 PF00577 Outer membrane usher protein YPTB2372 PF13953 PapC C-terminal domain YPTB2373 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB2373 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB2374 PF00419 Fimbrial protein YPTB2375 PF01435 Peptidase family M48 YPTB2376 PF03572 Peptidase family S41 YPTB2376 PF17804 Tail specific protease N-terminal domain YPTB2376 PF00595 PDZ domain YPTB2376 PF11818 C-terminal domain of tail specific protease (DUF3340) YPTB2377 PF04352 ProQ/FINO family YPTB2377 PF17516 ProQ C-terminal domain YPTB2378 PF13185 GAF domain YPTB2379 PF04403 Paraquat-inducible protein A YPTB2380 PF02470 MlaD protein YPTB2387 PF07351 Protein of unknown function (DUF1480) YPTB2392 PF01168 Alanine racemase, N-terminal domain YPTB2392 PF00842 Alanine racemase, C-terminal domain YPTB2394 PF03895 YadA-like membrane anchor domain YPTB2394 PF13018 Extended Signal Peptide of Type V secretion system YPTB2394 PF03895 YadA-like membrane anchor domain YPTB2394 PF05658 Head domain of trimeric autotransporter adhesin YPTB2394 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTB2394 PF13018 Extended Signal Peptide of Type V secretion system YPTB2394 PF05658 Head domain of trimeric autotransporter adhesin YPTB2394 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTB2395 PF01510 N-acetylmuramoyl-L-alanine amidase YPTB2396 PF04344 Chemotaxis phosphatase, CheZ YPTB2397 PF00072 Response regulator receiver domain YPTB2398 PF00072 Response regulator receiver domain YPTB2398 PF01339 CheB methylesterase YPTB2399 PF01739 CheR methyltransferase, SAM binding domain YPTB2399 PF03705 CheR methyltransferase, all-alpha domain YPTB2400 PF02203 Tar ligand binding domain homologue YPTB2400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB2400 PF00672 HAMP domain YPTB2401 PF02203 Tar ligand binding domain homologue YPTB2401 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB2401 PF00672 HAMP domain YPTB2404 PF01584 CheW-like domain YPTB2405 PF01627 Hpt domain YPTB2405 PF02895 Signal transducing histidine kinase, homodimeric domain YPTB2405 PF09078 CheY binding YPTB2405 PF01584 CheW-like domain YPTB2405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB2406 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPTB2406 PF00691 OmpA family YPTB2407 PF01618 MotA/TolQ/ExbB proton channel family YPTB2409 PF05247 Flagellar transcriptional activator (FlhD) YPTB2410 PF00689 Cation transporting ATPase, C-terminus YPTB2410 PF00690 Cation transporter/ATPase, N-terminus YPTB2411 PF02308 MgtC family YPTB2412 PF00672 HAMP domain YPTB2412 PF02203 Tar ligand binding domain homologue YPTB2412 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB2413 PF10781 Dextransucrase DSRB YPTB2414 PF00313 'Cold-shock' DNA-binding domain YPTB2415 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPTB2415 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPTB2415 PF00703 Glycosyl hydrolases family 2 YPTB2415 PF16353 Domain of unknown function(DUF4981) YPTB2415 PF02929 Beta galactosidase small chain YPTB2416 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB2416 PF16197 Ketoacyl-synthetase C-terminal extension YPTB2416 PF00107 Zinc-binding dehydrogenase YPTB2416 PF08240 Alcohol dehydrogenase GroES-like domain YPTB2416 PF00698 Acyl transferase domain YPTB2416 PF00550 Phosphopantetheine attachment site YPTB2416 PF14765 Polyketide synthase dehydratase YPTB2416 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB2416 PF08659 KR domain YPTB2417 PF10777 Inner membrane protein YlaC YPTB2418 PF13404 AsnC-type helix-turn-helix domain YPTB2418 PF01037 Lrp/AsnC ligand binding domain YPTB2420 PF14001 YdfZ protein YPTB2421 PF00328 Histidine phosphatase superfamily (branch 2) YPTB2422 PF01638 HxlR-like helix-turn-helix YPTB2423 PF05368 NmrA-like family YPTB2424 PF08447 PAS fold YPTB2424 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB2426 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB2426 PF00356 Bacterial regulatory proteins, lacI family YPTB2427 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTB2428 PF00849 RNA pseudouridylate synthase YPTB2429 PF00293 NUDIX domain YPTB2431 PF04356 Protein of unknown function (DUF489) YPTB2432 PF08328 Adenylosuccinate lyase C-terminal YPTB2432 PF00206 Lyase YPTB2434 PF00072 Response regulator receiver domain YPTB2434 PF00486 Transcriptional regulatory protein, C terminal YPTB2435 PF08918 PhoQ Sensor YPTB2435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB2436 PF08007 Cupin superfamily protein YPTB2437 PF01546 Peptidase family M20/M25/M40 YPTB2437 PF07687 Peptidase dimerisation domain YPTB2438 PF02146 Sir2 family YPTB2439 PF00480 ROK family YPTB2440 PF02687 FtsX-like permease family YPTB2440 PF12704 MacB-like periplasmic core domain YPTB2441 PF00005 ABC transporter YPTB2442 PF02687 FtsX-like permease family YPTB2442 PF12704 MacB-like periplasmic core domain YPTB2443 PF02559 CarD-like/TRCF domain YPTB2443 PF00270 DEAD/DEAH box helicase YPTB2443 PF17757 UvrB interaction domain YPTB2443 PF00271 Helicase conserved C-terminal domain YPTB2443 PF03461 TRCF domain YPTB2444 PF05433 Glycine zipper 2TM domain YPTB2447 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB2448 PF05728 Uncharacterised protein family (UPF0227) YPTB2449 PF00933 Glycosyl hydrolase family 3 N terminal domain YPTB2450 PF01636 Phosphotransferase enzyme family YPTB2451 PF13036 Peptidoglycan-synthase activator LpoB YPTB2451 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTB2452 PF07233 Protein of unknown function (DUF1425) YPTB2453 PF01230 HIT domain YPTB2454 PF08501 Shikimate dehydrogenase substrate binding domain YPTB2463 PF00367 phosphotransferase system, EIIB YPTB2463 PF02378 Phosphotransferase system, EIIC YPTB2464 PF01026 TatD related DNase YPTB2465 PF09115 DNA polymerase III, delta subunit, C terminal YPTB2466 PF02223 Thymidylate kinase YPTB2467 PF02618 YceG-like family YPTB2468 PF01063 Amino-transferase class IV YPTB2469 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB2469 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB2470 PF00550 Phosphopantetheine attachment site YPTB2472 PF00698 Acyl transferase domain YPTB2473 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPTB2473 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPTB2474 PF02504 Fatty acid synthesis protein YPTB2475 PF01783 Ribosomal L32p protein family YPTB2476 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPTB2477 PF02545 Maf-like protein YPTB2478 PF01479 S4 domain YPTB2478 PF00849 RNA pseudouridylate synthase YPTB2479 PF00575 S1 RNA binding domain YPTB2479 PF12111 Polyribonucleotide phosphorylase C terminal YPTB2479 PF10150 Ribonuclease E/G family YPTB2481 PF03992 Antibiotic biosynthesis monooxygenase YPTB2482 PF01979 Amidohydrolase family YPTB2483 PF06183 DinI-like family YPTB2484 PF13991 BssS protein family YPTB2485 PF01266 FAD dependent oxidoreductase YPTB2486 PF00196 Bacterial regulatory proteins, luxR family YPTB2487 PF01594 AI-2E family transporter YPTB2490 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTB2491 PF00854 POT family YPTB2492 PF07119 Protein of unknown function (DUF1375) YPTB2493 PF00535 Glycosyl transferase family 2 YPTB2494 PF04349 Periplasmic glucan biosynthesis protein, MdoG YPTB2497 PF00999 Sodium/hydrogen exchanger family YPTB2497 PF03471 Transporter associated domain YPTB2497 PF02080 TrkA-C domain YPTB2499 PF00765 Autoinducer synthase YPTB2500 PF03472 Autoinducer binding domain YPTB2500 PF00196 Bacterial regulatory proteins, luxR family YPTB2501 PF03466 LysR substrate binding domain YPTB2501 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2502 PF00083 Sugar (and other) transporter YPTB2504 PF00248 Aldo/keto reductase family YPTB2505 PF09618 CRISPR-associated protein (Cas_Csy4) YPTB2506 PF09615 CRISPR-associated protein (Cas_Csy3) YPTB2507 PF09614 CRISPR-associated protein (Cas_Csy2) YPTB2508 PF09611 CRISPR-associated protein (Cas_Csy1) YPTB2510 PF01867 CRISPR associated protein Cas1 YPTB2511 PF00924 Mechanosensitive ion channel YPTB2515 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPTB2516 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2517 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2519 PF00356 Bacterial regulatory proteins, lacI family YPTB2520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTB2520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTB2520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTB2520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTB2521 PF17912 MalK OB fold domain YPTB2521 PF00005 ABC transporter YPTB2527 PF04829 Pre-toxin domain with VENN motif YPTB2527 PF05860 haemagglutination activity domain YPTB2527 PF13332 Hemagglutinin repeat YPTB2527 PF13018 Extended Signal Peptide of Type V secretion system YPTB2528 PF08479 POTRA domain, ShlB-type YPTB2528 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB2528 PF17287 POTRA domain YPTB2529 PF00175 Oxidoreductase NAD-binding domain YPTB2529 PF00970 Oxidoreductase FAD-binding domain YPTB2529 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB2530 PF00355 Rieske [2Fe-2S] domain YPTB2530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPTB2531 PF02028 BCCT, betaine/carnitine/choline family transporter YPTB2532 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTB2533 PF03466 LysR substrate binding domain YPTB2533 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2534 PF00356 Bacterial regulatory proteins, lacI family YPTB2535 PF02653 Branched-chain amino acid transport system / permease component YPTB2536 PF00005 ABC transporter YPTB2537 PF13407 Periplasmic binding protein domain YPTB2538 PF08240 Alcohol dehydrogenase GroES-like domain YPTB2538 PF00107 Zinc-binding dehydrogenase YPTB2542 PF13505 Outer membrane protein beta-barrel domain YPTB2543 PF00892 EamA-like transporter family YPTB2545 PF13649 Methyltransferase domain YPTB2546 PF00210 Ferritin-like domain YPTB2548 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB2549 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2550 PF00005 ABC transporter YPTB2551 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB2551 PF08447 PAS fold YPTB2551 PF13426 PAS domain YPTB2553 PF05971 RNA methyltransferase YPTB2554 PF07338 Protein of unknown function (DUF1471) YPTB2555 PF02885 Glycosyl transferase family, helical bundle domain YPTB2556 PF13193 AMP-binding enzyme C-terminal domain YPTB2556 PF00501 AMP-binding enzyme YPTB2557 PF13378 Enolase C-terminal domain-like YPTB2558 PF00378 Enoyl-CoA hydratase/isomerase YPTB2559 PF12697 Alpha/beta hydrolase family YPTB2560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB2560 PF16582 Middle domain of thiamine pyrophosphate YPTB2560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB2561 PF00425 chorismate binding enzyme YPTB2563 PF05957 Bacterial protein of unknown function (DUF883) YPTB2565 PF00920 Dehydratase family YPTB2566 PF03928 Haem-degrading YPTB2567 PF07690 Major Facilitator Superfamily YPTB2568 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB2568 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB2569 PF00356 Bacterial regulatory proteins, lacI family YPTB2571 PF00106 short chain dehydrogenase YPTB2572 PF01202 Shikimate kinase YPTB2573 PF04074 YhcH/YjgK/YiaL YPTB2575 PF00361 Proton-conducting membrane transporter YPTB2576 PF00361 Proton-conducting membrane transporter YPTB2577 PF00361 Proton-conducting membrane transporter YPTB2577 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPTB2578 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPTB2579 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPTB2580 PF12838 4Fe-4S dicluster domain YPTB2581 PF00146 NADH dehydrogenase YPTB2582 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPTB2582 PF01568 Molydopterin dinucleotide binding domain YPTB2582 PF00384 Molybdopterin oxidoreductase YPTB2582 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB2583 PF10531 SLBB domain YPTB2583 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPTB2583 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPTB2585 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPTB2585 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPTB2586 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPTB2587 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPTB2588 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2588 PF03466 LysR substrate binding domain YPTB2589 PF00155 Aminotransferase class I and II YPTB2592 PF03600 Citrate transporter YPTB2592 PF02080 TrkA-C domain YPTB2593 PF13419 Haloacid dehalogenase-like hydrolase YPTB2594 PF03887 YfbU domain YPTB2595 PF04217 Protein of unknown function, DUF412 YPTB2597 PF00871 Acetokinase family YPTB2598 PF07085 DRTGG domain YPTB2598 PF01515 Phosphate acetyl/butaryl transferase YPTB2599 PF00356 Bacterial regulatory proteins, lacI family YPTB2599 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB2600 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB2602 PF03611 PTS system sugar-specific permease component YPTB2603 PF00293 NUDIX domain YPTB2604 PF12850 Calcineurin-like phosphoesterase superfamily domain YPTB2606 PF01370 NAD dependent epimerase/dehydratase family YPTB2606 PF08338 Domain of unknown function (DUF1731) YPTB2607 PF00005 ABC transporter YPTB2608 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2609 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2610 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB2611 PF02441 Flavoprotein YPTB2612 PF00156 Phosphoribosyl transferase domain YPTB2613 PF02674 Colicin V production protein YPTB2614 PF05036 Sporulation related domain YPTB2615 PF08245 Mur ligase middle domain YPTB2615 PF02875 Mur ligase family, glutamate ligase domain YPTB2616 PF01039 Carboxyl transferase domain YPTB2616 PF17848 Acetyl-coA carboxylase zinc finger domain YPTB2617 PF09335 SNARE associated Golgi protein YPTB2618 PF01416 tRNA pseudouridine synthase YPTB2619 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTB2619 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTB2620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB2620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB2620 PF11890 Domain of unknown function (DUF3410) YPTB2622 PF00892 EamA-like transporter family YPTB2624 PF00419 Fimbrial protein YPTB2625 PF01177 Asp/Glu/Hydantoin racemase YPTB2626 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB2626 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB2627 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPTB2627 PF01266 FAD dependent oxidoreductase YPTB2628 PF08891 YfcL protein YPTB2629 PF04315 Elongation factor P hydroxylase YPTB2630 PF01925 Sulfite exporter TauE/SafE YPTB2631 PF03411 Penicillin-insensitive murein endopeptidase YPTB2632 PF01264 Chorismate synthase YPTB2633 PF05175 Methyltransferase small domain YPTB2634 PF01713 Smr domain YPTB2635 PF00300 Histidine phosphatase superfamily (branch 1) YPTB2636 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPTB2636 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPTB2636 PF00378 Enoyl-CoA hydratase/isomerase YPTB2637 PF02803 Thiolase, C-terminal domain YPTB2637 PF00108 Thiolase, N-terminal domain YPTB2638 PF04175 Protein of unknown function (DUF406) YPTB2639 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPTB2640 PF04333 MlaA lipoprotein YPTB2641 PF03918 Cytochrome C biogenesis protein YPTB2642 PF03918 Cytochrome C biogenesis protein YPTB2643 PF08534 Redoxin YPTB2644 PF01578 Cytochrome C assembly protein YPTB2644 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPTB2645 PF03100 CcmE YPTB2646 PF04995 Heme exporter protein D (CcmD) YPTB2647 PF01578 Cytochrome C assembly protein YPTB2648 PF03379 CcmB protein YPTB2649 PF00005 ABC transporter YPTB2651 PF04011 LemA family YPTB2653 PF03831 PhnA domain YPTB2653 PF08274 PhnA Zinc-Ribbon YPTB2659 PF04717 Type VI secretion system, phage-baseplate injector YPTB2668 PF00577 Outer membrane usher protein YPTB2668 PF13954 PapC N-terminal domain YPTB2668 PF13953 PapC C-terminal domain YPTB2669 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB2669 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB2670 PF16970 Type-1 fimbrial protein, A YPTB2671 PF07724 AAA domain (Cdc48 subfamily) YPTB2671 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB2671 PF17871 AAA lid domain YPTB2671 PF00004 ATPase family associated with various cellular activities (AAA) YPTB2681 PF13406 Transglycosylase SLT domain YPTB2683 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2684 PF00005 ABC transporter YPTB2686 PF05638 Type VI secretion system effector, Hcp YPTB2688 PF01568 Molydopterin dinucleotide binding domain YPTB2688 PF00384 Molybdopterin oxidoreductase YPTB2688 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB2689 PF13247 4Fe-4S dicluster domain YPTB2689 PF12800 4Fe-4S binding domain YPTB2690 PF04976 DMSO reductase anchor subunit (DmsC) YPTB2691 PF02613 Nitrate reductase delta subunit YPTB2693 PF05643 Putative bacterial lipoprotein (DUF799) YPTB2695 PF03783 Curli production assembly/transport component CsgG YPTB2697 PF01292 Prokaryotic cytochrome b561 YPTB2698 PF00155 Aminotransferase class I and II YPTB2699 PF07350 Protein of unknown function (DUF1479) YPTB2700 PF02685 Glucokinase YPTB2702 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB2702 PF03466 LysR substrate binding domain YPTB2703 PF00248 Aldo/keto reductase family YPTB2705 PF01566 Natural resistance-associated macrophage protein YPTB2706 PF01773 Na+ dependent nucleoside transporter N-terminus YPTB2706 PF07670 Nucleoside recognition YPTB2706 PF07662 Na+ dependent nucleoside transporter C-terminus YPTB2707 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTB2710 PF12843 Putative quorum-sensing-regulated virulence factor YPTB2711 PF12826 Helix-hairpin-helix motif YPTB2711 PF00533 BRCA1 C Terminus (BRCT) domain YPTB2711 PF01653 NAD-dependent DNA ligase adenylation domain YPTB2711 PF03120 NAD-dependent DNA ligase OB-fold domain YPTB2711 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPTB2712 PF04354 ZipA, C-terminal FtsZ-binding domain YPTB2714 PF00291 Pyridoxal-phosphate dependent enzyme YPTB2715 PF00381 PTS HPr component phosphorylation site YPTB2716 PF02896 PEP-utilising enzyme, TIM barrel domain YPTB2716 PF05524 PEP-utilising enzyme, N-terminal YPTB2716 PF00391 PEP-utilising enzyme, mobile domain YPTB2717 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPTB2718 PF00512 His Kinase A (phospho-acceptor) domain YPTB2718 PF00672 HAMP domain YPTB2718 PF16527 Two-component sensor protein CpxA, periplasmic domain YPTB2718 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB2719 PF00072 Response regulator receiver domain YPTB2719 PF00486 Transcriptional regulatory protein, C terminal YPTB2720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB2721 PF00005 ABC transporter YPTB2721 PF02687 FtsX-like permease family YPTB2721 PF12704 MacB-like periplasmic core domain YPTB2722 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB2722 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB2723 PF00474 Sodium:solute symporter family YPTB2725 PF05195 Aminopeptidase P, N-terminal domain YPTB2725 PF00557 Metallopeptidase family M24 YPTB2726 PF00155 Aminotransferase class I and II YPTB2728 PF00512 His Kinase A (phospho-acceptor) domain YPTB2728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB2728 PF00672 HAMP domain YPTB2729 PF00072 Response regulator receiver domain YPTB2729 PF00486 Transcriptional regulatory protein, C terminal YPTB2731 PF00291 Pyridoxal-phosphate dependent enzyme YPTB2732 PF00005 ABC transporter YPTB2733 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2734 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2736 PF07690 Major Facilitator Superfamily YPTB2737 PF01380 SIS domain YPTB2737 PF01418 Helix-turn-helix domain, rpiR family YPTB2738 PF04074 YhcH/YjgK/YiaL YPTB2739 PF00480 ROK family YPTB2740 PF12468 Type III secretion system leucine rich repeat protein YPTB2741 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPTB2742 PF00701 Dihydrodipicolinate synthetase family YPTB2743 PF04261 Dyp-type peroxidase family YPTB2744 PF06572 Protein of unknown function (DUF1131) YPTB2745 PF04076 Bacterial OB fold (BOF) protein YPTB2746 PF13018 Extended Signal Peptide of Type V secretion system YPTB2746 PF03797 Autotransporter beta-domain YPTB2746 PF03212 Pertactin YPTB2746 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB2753 PF00583 Acetyltransferase (GNAT) family YPTB2754 PF01218 Coproporphyrinogen III oxidase YPTB2755 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPTB2756 PF01515 Phosphate acetyl/butaryl transferase YPTB2756 PF03949 Malic enzyme, NAD binding domain YPTB2756 PF00390 Malic enzyme, N-terminal domain YPTB2757 PF00293 NUDIX domain YPTB2758 PF03264 NapC/NirT cytochrome c family, N-terminal region YPTB2759 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPTB2760 PF00384 Molybdopterin oxidoreductase YPTB2760 PF01568 Molydopterin dinucleotide binding domain YPTB2760 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPTB2760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB2761 PF03927 NapD protein YPTB2762 PF13187 4Fe-4S dicluster domain YPTB2762 PF12800 4Fe-4S binding domain YPTB2762 PF00037 4Fe-4S binding domain YPTB2763 PF00196 Bacterial regulatory proteins, luxR family YPTB2763 PF00072 Response regulator receiver domain YPTB2765 PF00873 AcrB/AcrD/AcrF family YPTB2767 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPTB2768 PF04055 Radical SAM superfamily YPTB2768 PF13186 Iron-sulfur cluster-binding domain YPTB2769 PF00884 Sulfatase YPTB2770 PF08402 TOBE domain YPTB2770 PF00005 ABC transporter YPTB2771 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2774 PF03960 ArsC family YPTB2775 PF07687 Peptidase dimerisation domain YPTB2775 PF01546 Peptidase family M20/M25/M40 YPTB2776 PF02557 D-alanyl-D-alanine carboxypeptidase YPTB2777 PF13980 Uncharacterised protein family (UPF0370) YPTB2778 PF17176 tRNA-binding domain YPTB2778 PF05127 Helicase YPTB2778 PF13718 GNAT acetyltransferase 2 YPTB2778 PF08351 Domain of unknown function (DUF1726) YPTB2779 PF04284 Protein of unknown function (DUF441) YPTB2780 PF04228 Putative neutral zinc metallopeptidase YPTB2781 PF01259 SAICAR synthetase YPTB2782 PF06804 NlpB/DapX lipoprotein YPTB2783 PF00701 Dihydrodipicolinate synthetase family YPTB2784 PF01842 ACT domain YPTB2785 PF00578 AhpC/TSA family YPTB2789 PF01594 AI-2E family transporter YPTB2790 PF01435 Peptidase family M48 YPTB2790 PF07720 Tetratricopeptide repeat YPTB2791 PF03960 ArsC family YPTB2792 PF00308 Bacterial dnaA protein YPTB2793 PF00860 Permease family YPTB2795 PF02769 AIR synthase related protein, C-terminal domain YPTB2795 PF00586 AIR synthase related protein, N-terminal domain YPTB2796 PF00551 Formyl transferase YPTB2797 PF13302 Acetyltransferase (GNAT) domain YPTB2799 PF00005 ABC transporter YPTB2800 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2801 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2802 PF02503 Polyphosphate kinase middle domain YPTB2802 PF13090 Polyphosphate kinase C-terminal domain 2 YPTB2802 PF17941 Polyphosphate kinase C-terminal domain 1 YPTB2802 PF13089 Polyphosphate kinase N-terminal domain YPTB2803 PF02541 Ppx/GppA phosphatase family YPTB2805 PF00571 CBS domain YPTB2805 PF01769 Divalent cation transporter YPTB2805 PF03448 MgtE intracellular N domain YPTB2806 PF00012 Hsp70 protein YPTB2807 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2808 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2810 PF00202 Aminotransferase class-III YPTB2811 PF00155 Aminotransferase class I and II YPTB2811 PF00392 Bacterial regulatory proteins, gntR family YPTB2812 PF00005 ABC transporter YPTB2812 PF08402 TOBE domain YPTB2813 PF13533 Biotin-lipoyl like YPTB2814 PF00873 AcrB/AcrD/AcrF family YPTB2815 PF00873 AcrB/AcrD/AcrF family YPTB2816 PF07690 Major Facilitator Superfamily YPTB2817 PF00672 HAMP domain YPTB2817 PF00512 His Kinase A (phospho-acceptor) domain YPTB2817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB2818 PF00486 Transcriptional regulatory protein, C terminal YPTB2818 PF00072 Response regulator receiver domain YPTB2819 PF07411 Domain of unknown function (DUF1508) YPTB2821 PF00781 Diacylglycerol kinase catalytic domain YPTB2824 PF08543 Phosphomethylpyrimidine kinase YPTB2831 PF05638 Type VI secretion system effector, Hcp YPTB2832 PF00117 Glutamine amidotransferase class-I YPTB2832 PF00958 GMP synthase C terminal domain YPTB2832 PF02540 NAD synthase YPTB2833 PF00571 CBS domain YPTB2833 PF00478 IMP dehydrogenase / GMP reductase domain YPTB2834 PF13742 OB-fold nucleic acid binding domain YPTB2834 PF02601 Exonuclease VII, large subunit YPTB2835 PF07191 zinc-ribbons YPTB2837 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPTB2837 PF01926 50S ribosome-binding GTPase YPTB2838 PF13360 PQQ-like domain YPTB2839 PF09976 Tetratricopeptide repeat-like domain YPTB2840 PF13393 Histidyl-tRNA synthetase YPTB2840 PF03129 Anticodon binding domain YPTB2841 PF04551 GcpE protein YPTB2842 PF13464 Domain of unknown function (DUF4115) YPTB2844 PF04055 Radical SAM superfamily YPTB2845 PF00334 Nucleoside diphosphate kinase YPTB2848 PF03212 Pertactin YPTB2848 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB2848 PF03797 Autotransporter beta-domain YPTB2849 PF03797 Autotransporter beta-domain YPTB2849 PF03212 Pertactin YPTB2849 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB2850 PF03212 Pertactin YPTB2850 PF03797 Autotransporter beta-domain YPTB2850 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB2851 PF14581 SseB protein C-terminal domain YPTB2851 PF07179 SseB protein N-terminal domain YPTB2852 PF00883 Cytosol aminopeptidase family, catalytic domain YPTB2852 PF12404 Peptidase YPTB2853 PF04384 Iron-sulphur cluster assembly YPTB2854 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB2855 PF00012 Hsp70 protein YPTB2856 PF07743 HSCB C-terminal oligomerisation domain YPTB2856 PF00226 DnaJ domain YPTB2857 PF01521 Iron-sulphur cluster biosynthesis YPTB2858 PF01592 NifU-like N terminal domain YPTB2859 PF00266 Aminotransferase class-V YPTB2860 PF02082 Transcriptional regulator YPTB2861 PF00588 SpoU rRNA Methylase family YPTB2862 PF00459 Inositol monophosphatase family YPTB2863 PF03824 High-affinity nickel-transport protein YPTB2864 PF06226 Protein of unknown function (DUF1007) YPTB2865 PF00874 PRD domain YPTB2866 PF12832 MFS_1 like family YPTB2867 PF13505 Outer membrane protein beta-barrel domain YPTB2869 PF00464 Serine hydroxymethyltransferase YPTB2870 PF00970 Oxidoreductase FAD-binding domain YPTB2870 PF00175 Oxidoreductase NAD-binding domain YPTB2870 PF00042 Globin YPTB2871 PF14503 YhfZ C-terminal domain YPTB2871 PF14502 Helix-turn-helix domain YPTB2872 PF00543 Nitrogen regulatory protein P-II YPTB2873 PF00795 Carbon-nitrogen hydrolase YPTB2873 PF02540 NAD synthase YPTB2874 PF00158 Sigma-54 interaction domain YPTB2874 PF00072 Response regulator receiver domain YPTB2875 PF13942 YfhG lipoprotein YPTB2876 PF00512 His Kinase A (phospho-acceptor) domain YPTB2876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB2879 PF02769 AIR synthase related protein, C-terminal domain YPTB2879 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPTB2879 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPTB2880 PF01464 Transglycosylase SLT domain YPTB2880 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB2881 PF14437 MafB19-like deaminase YPTB2883 PF01380 SIS domain YPTB2884 PF01418 Helix-turn-helix domain, rpiR family YPTB2884 PF01380 SIS domain YPTB2885 PF12838 4Fe-4S dicluster domain YPTB2886 PF01648 4'-phosphopantetheinyl transferase superfamily YPTB2887 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPTB2888 PF11967 Recombination protein O N terminal YPTB2888 PF02565 Recombination protein O C terminal YPTB2889 PF07650 KH domain YPTB2889 PF01926 50S ribosome-binding GTPase YPTB2890 PF00035 Double-stranded RNA binding motif YPTB2890 PF14622 Ribonuclease-III-like YPTB2891 PF10502 Signal peptidase, peptidase S26 YPTB2892 PF00679 Elongation factor G C-terminus YPTB2892 PF03144 Elongation factor Tu domain 2 YPTB2892 PF00009 Elongation factor Tu GTP binding domain YPTB2892 PF06421 GTP-binding protein LepA C-terminus YPTB2895 PF17188 MucB/RseB C-terminal domain YPTB2895 PF03888 MucB/RseB N-terminal domain YPTB2896 PF03872 Anti sigma-E protein RseA, N-terminal domain YPTB2896 PF03873 Anti sigma-E protein RseA, C-terminal domain YPTB2897 PF04542 Sigma-70 region 2 YPTB2897 PF08281 Sigma-70, region 4 YPTB2898 PF00890 FAD binding domain YPTB2898 PF02910 Fumarate reductase flavoprotein C-term YPTB2899 PF05175 Methyltransferase small domain YPTB2900 PF00271 Helicase conserved C-terminal domain YPTB2900 PF00270 DEAD/DEAH box helicase YPTB2901 PF12796 Ankyrin repeats (3 copies) YPTB2903 PF01228 Glycine radical YPTB2904 PF03167 Uracil DNA glycosylase superfamily YPTB2905 PF01470 Pyroglutamyl peptidase YPTB2908 PF03746 LamB/YcsF family YPTB2909 PF02626 Carboxyltransferase domain, subdomain A and B YPTB2910 PF02682 Carboxyltransferase domain, subdomain C and D YPTB2911 PF01784 NIF3 (NGG1p interacting factor 3) YPTB2912 PF02112 cAMP phosphodiesterases class-II YPTB2913 PF03441 FAD binding domain of DNA photolyase YPTB2913 PF00875 DNA photolyase YPTB2914 PF08349 Protein of unknown function (DUF1722) YPTB2915 PF10725 Protein of unknown function (DUF2517) YPTB2916 PF03814 Potassium-transporting ATPase A subunit YPTB2918 PF02669 K+-transporting ATPase, c chain YPTB2919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB2919 PF13492 GAF domain YPTB2919 PF13493 Domain of unknown function (DUF4118) YPTB2919 PF02702 Osmosensitive K+ channel His kinase sensor domain YPTB2919 PF00512 His Kinase A (phospho-acceptor) domain YPTB2920 PF00072 Response regulator receiver domain YPTB2920 PF00486 Transcriptional regulatory protein, C terminal YPTB2923 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTB2923 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTB2923 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTB2923 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTB2924 PF03925 SeqA protein C-terminal domain YPTB2924 PF17206 SeqA protein N-terminal domain YPTB2927 PF04794 YdjC-like protein YPTB2928 PF12833 Helix-turn-helix domain YPTB2928 PF07883 Cupin domain YPTB2929 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPTB2931 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB2932 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTB2933 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTB2934 PF07885 Ion channel YPTB2934 PF02254 TrkA-N domain YPTB2935 PF06411 HdeA/HdeB family YPTB2936 PF03824 High-affinity nickel-transport protein YPTB2937 PF03253 Urea transporter YPTB2938 PF01774 UreD urease accessory protein YPTB2939 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPTB2940 PF01730 UreF YPTB2941 PF02814 UreE urease accessory protein, N-terminal domain YPTB2941 PF05194 UreE urease accessory protein, C-terminal domain YPTB2942 PF00449 Urease alpha-subunit, N-terminal domain YPTB2942 PF01979 Amidohydrolase family YPTB2943 PF00699 Urease beta subunit YPTB2944 PF00547 Urease, gamma subunit YPTB2945 PF00005 ABC transporter YPTB2946 PF00005 ABC transporter YPTB2947 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2947 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB2948 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2949 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB2950 PF00313 'Cold-shock' DNA-binding domain YPTB2952 PF06711 Protein of unknown function (DUF1198) YPTB2953 PF09400 Protein of unknown function (DUF2002) YPTB2954 PF06392 Acid shock protein repeat YPTB2956 PF07972 NrdI Flavodoxin like YPTB2957 PF08343 Ribonucleotide reductase N-terminal YPTB2957 PF00317 Ribonucleotide reductase, all-alpha domain YPTB2957 PF02867 Ribonucleotide reductase, barrel domain YPTB2958 PF00268 Ribonucleotide reductase, small chain YPTB2959 PF00571 CBS domain YPTB2959 PF00005 ABC transporter YPTB2960 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2961 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTB2963 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPTB2964 PF00929 Exonuclease YPTB2965 PF00075 RNase H YPTB2966 PF08241 Methyltransferase domain YPTB2967 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPTB2967 PF00753 Metallo-beta-lactamase superfamily YPTB2968 PF01464 Transglycosylase SLT domain YPTB2968 PF01476 LysM domain YPTB2969 PF03372 Endonuclease/Exonuclease/phosphatase family YPTB2971 PF00248 Aldo/keto reductase family YPTB2973 PF00005 ABC transporter YPTB2973 PF09383 NIL domain YPTB2974 PF00528 Binding-protein-dependent transport system inner membrane component YPTB2975 PF03180 NLPA lipoprotein YPTB2976 PF16358 RcsF lipoprotein YPTB2977 PF18389 TrmO C-terminal domain YPTB2977 PF01980 tRNA-methyltransferase O YPTB2978 PF03129 Anticodon binding domain YPTB2978 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTB2978 PF04073 Aminoacyl-tRNA editing domain YPTB2979 PF04170 NlpE N-terminal domain YPTB2979 PF17185 NlpE C-terminal OB domain YPTB2980 PF00472 RF-1 domain YPTB2981 PF07152 YaeQ protein YPTB2982 PF06786 Uncharacterised protein family (UPF0253) YPTB2983 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPTB2984 PF00034 Cytochrome c YPTB2985 PF01171 PP-loop family YPTB2985 PF09179 TilS substrate binding domain YPTB2985 PF11734 TilS substrate C-terminal domain YPTB2986 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPTB2987 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPTB2988 PF01336 OB-fold nucleic acid binding domain YPTB2988 PF02811 PHP domain YPTB2988 PF14579 Helix-hairpin-helix motif YPTB2988 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPTB2988 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPTB2989 PF01351 Ribonuclease HII YPTB2990 PF02684 Lipid-A-disaccharide synthetase YPTB2991 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB2991 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPTB2992 PF07977 FabA-like domain YPTB2993 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPTB2993 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB2994 PF03938 Outer membrane protein (OmpH-like) YPTB2995 PF07244 Surface antigen variable number repeat YPTB2995 PF01103 Surface antigen YPTB2996 PF17820 PDZ domain YPTB2996 PF02163 Peptidase family M50 YPTB2998 PF01255 Putative undecaprenyl diphosphate synthase YPTB2999 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPTB2999 PF13288 DXP reductoisomerase C-terminal domain YPTB2999 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPTB3000 PF01765 Ribosome recycling factor YPTB3001 PF00696 Amino acid kinase family YPTB3002 PF00889 Elongation factor TS YPTB3003 PF00318 Ribosomal protein S2 YPTB3004 PF00557 Metallopeptidase family M24 YPTB3005 PF01909 Nucleotidyltransferase domain YPTB3005 PF08335 GlnD PII-uridylyltransferase YPTB3005 PF01842 ACT domain YPTB3005 PF01966 HD domain YPTB3006 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB3006 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPTB3006 PF14602 Hexapeptide repeat of succinyl-transferase YPTB3007 PF11944 Protein of unknown function (DUF3461) YPTB3008 PF00258 Flavodoxin YPTB3009 PF00849 RNA pseudouridylate synthase YPTB3010 PF04287 tRNA pseudouridine synthase C YPTB3011 PF07348 Syd protein (SUKH-2) YPTB3012 PF14489 QueF-like protein YPTB3012 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPTB3013 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPTB3013 PF11892 Domain of unknown function (DUF3412) YPTB3013 PF03641 Possible lysine decarboxylase YPTB3014 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPTB3014 PF01367 5'-3' exonuclease, C-terminal SAM fold YPTB3015 PF01728 FtsJ-like methyltransferase YPTB3015 PF18125 RlmM ferredoxin-like domain YPTB3016 PF04241 Protein of unknown function (DUF423) YPTB3017 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3017 PF03466 LysR substrate binding domain YPTB3018 PF00266 Aminotransferase class-V YPTB3019 PF02657 Fe-S metabolism associated domain YPTB3020 PF00899 ThiF family YPTB3021 PF06725 3D domain YPTB3021 PF03562 MltA specific insert domain YPTB3022 PF01520 N-acetylmuramoyl-L-alanine amidase YPTB3022 PF11741 AMIN domain YPTB3023 PF00696 Amino acid kinase family YPTB3023 PF00583 Acetyltransferase (GNAT) family YPTB3024 PF13538 UvrD-like helicase C-terminal domain YPTB3025 PF13361 UvrD-like helicase C-terminal domain YPTB3025 PF00580 UvrD/REP helicase N-terminal domain YPTB3025 PF12705 PD-(D/E)XK nuclease superfamily YPTB3026 PF16187 Middle or third domain of peptidase_M16 YPTB3026 PF05193 Peptidase M16 inactive domain YPTB3026 PF00675 Insulinase (Peptidase family M16) YPTB3027 PF17946 RecC C-terminal domain YPTB3033 PF00303 Thymidylate synthase YPTB3034 PF01790 Prolipoprotein diacylglyceryl transferase YPTB3035 PF01590 GAF domain YPTB3035 PF00391 PEP-utilising enzyme, mobile domain YPTB3035 PF05524 PEP-utilising enzyme, N-terminal YPTB3035 PF02896 PEP-utilising enzyme, TIM barrel domain YPTB3036 PF00293 NUDIX domain YPTB3037 PF02976 DNA mismatch repair enzyme MutH YPTB3038 PF00248 Aldo/keto reductase family YPTB3041 PF07690 Major Facilitator Superfamily YPTB3042 PF01553 Acyltransferase YPTB3042 PF13193 AMP-binding enzyme C-terminal domain YPTB3042 PF00501 AMP-binding enzyme YPTB3043 PF00384 Molybdopterin oxidoreductase YPTB3043 PF01568 Molydopterin dinucleotide binding domain YPTB3044 PF00356 Bacterial regulatory proteins, lacI family YPTB3045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPTB3045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPTB3046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3046 PF03466 LysR substrate binding domain YPTB3047 PF07690 Major Facilitator Superfamily YPTB3048 PF03466 LysR substrate binding domain YPTB3048 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3051 PF00672 HAMP domain YPTB3051 PF02203 Tar ligand binding domain homologue YPTB3051 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB3055 PF06750 Bacterial Peptidase A24 N-terminal domain YPTB3055 PF01478 Type IV leader peptidase family YPTB3060 PF07963 Prokaryotic N-terminal methylation motif YPTB3060 PF02501 Type II secretion system (T2SS), protein I YPTB3062 PF08334 Type II secretion system (T2SS), protein G YPTB3062 PF07963 Prokaryotic N-terminal methylation motif YPTB3063 PF00482 Type II secretion system (T2SS), protein F YPTB3065 PF00263 Bacterial type II and III secretion system protein YPTB3065 PF03958 Bacterial type II/III secretion system short domain YPTB3068 PF00484 Carbonic anhydrase YPTB3073 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPTB3073 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPTB3073 PF09092 Lyase, N terminal YPTB3073 PF09093 Lyase, catalytic YPTB3074 PF00884 Sulfatase YPTB3075 PF00455 DeoR C terminal sensor domain YPTB3075 PF08220 DeoR-like helix-turn-helix domain YPTB3076 PF08013 Tagatose 6 phosphate kinase YPTB3077 PF01380 SIS domain YPTB3078 PF03830 PTS system sorbose subfamily IIB component YPTB3079 PF03609 PTS system sorbose-specific iic component YPTB3080 PF03613 PTS system mannose/fructose/sorbose family IID component YPTB3081 PF03610 PTS system fructose IIA component YPTB3082 PF01979 Amidohydrolase family YPTB3085 PF13186 Iron-sulfur cluster-binding domain YPTB3085 PF04055 Radical SAM superfamily YPTB3086 PF00884 Sulfatase YPTB3088 PF01116 Fructose-bisphosphate aldolase class-II YPTB3091 PF00356 Bacterial regulatory proteins, lacI family YPTB3092 PF07690 Major Facilitator Superfamily YPTB3093 PF16338 Domain of unknown function (DUF4968) YPTB3093 PF01055 Glycosyl hydrolases family 31 YPTB3093 PF17137 Domain of unknown function (DUF5110) YPTB3093 PF13802 Galactose mutarotase-like YPTB3094 PF00356 Bacterial regulatory proteins, lacI family YPTB3095 PF02264 LamB porin YPTB3097 PF08533 Beta-galactosidase C-terminal domain YPTB3097 PF08532 Beta-galactosidase trimerisation domain YPTB3097 PF02449 Beta-galactosidase YPTB3098 PF07745 Glycosyl hydrolase family 53 YPTB3099 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3100 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3101 PF13416 Bacterial extracellular solute-binding protein YPTB3102 PF17912 MalK OB fold domain YPTB3102 PF00005 ABC transporter YPTB3103 PF00005 ABC transporter YPTB3104 PF02653 Branched-chain amino acid transport system / permease component YPTB3105 PF13407 Periplasmic binding protein domain YPTB3107 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPTB3108 PF03551 Transcriptional regulator PadR-like family YPTB3123 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPTB3124 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPTB3129 PF00589 Phage integrase family YPTB3129 PF02899 Phage integrase, N-terminal SAM-like domain YPTB3137 PF05840 Bacteriophage replication gene A protein (GPA) YPTB3162 PF00589 Phage integrase family YPTB3162 PF13356 Arm DNA-binding domain YPTB3162 PF14659 Phage integrase, N-terminal SAM-like domain YPTB3163 PF00152 tRNA synthetases class II (D, K and N) YPTB3163 PF01336 OB-fold nucleic acid binding domain YPTB3165 PF17768 RecJ OB domain YPTB3165 PF02272 DHHA1 domain YPTB3165 PF01368 DHH family YPTB3166 PF13098 Thioredoxin-like domain YPTB3166 PF10411 Disulfide bond isomerase protein N-terminus YPTB3167 PF00589 Phage integrase family YPTB3167 PF02899 Phage integrase, N-terminal SAM-like domain YPTB3168 PF00258 Flavodoxin YPTB3169 PF06123 Inner membrane protein CreD YPTB3170 PF00512 His Kinase A (phospho-acceptor) domain YPTB3170 PF00672 HAMP domain YPTB3170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB3171 PF00072 Response regulator receiver domain YPTB3171 PF00486 Transcriptional regulatory protein, C terminal YPTB3172 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPTB3173 PF03937 Flavinator of succinate dehydrogenase YPTB3174 PF01571 Aminomethyltransferase folate-binding domain YPTB3176 PF03006 Haemolysin-III related YPTB3180 PF02347 Glycine cleavage system P-protein YPTB3181 PF01597 Glycine cleavage H-protein YPTB3182 PF01571 Aminomethyltransferase folate-binding domain YPTB3182 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPTB3183 PF01494 FAD binding domain YPTB3184 PF01494 FAD binding domain YPTB3185 PF00557 Metallopeptidase family M24 YPTB3185 PF05195 Aminopeptidase P, N-terminal domain YPTB3186 PF03695 Uncharacterised protein family (UPF0149) YPTB3187 PF05164 Cell division protein ZapA YPTB3188 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPTB3189 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB3189 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB3189 PF01842 ACT domain YPTB3190 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPTB3191 PF03466 LysR substrate binding domain YPTB3191 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3192 PF04402 Protein of unknown function (DUF541) YPTB3193 PF01810 LysE type translocator YPTB3194 PF05552 Conserved TM helix YPTB3194 PF00924 Mechanosensitive ion channel YPTB3195 PF01116 Fructose-bisphosphate aldolase class-II YPTB3196 PF00162 Phosphoglycerate kinase YPTB3197 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTB3197 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPTB3198 PF00456 Transketolase, thiamine diphosphate binding domain YPTB3198 PF02779 Transketolase, pyrimidine binding domain YPTB3198 PF02780 Transketolase, C-terminal domain YPTB3199 PF01435 Peptidase family M48 YPTB3201 PF01797 Transposase IS200 like YPTB3202 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPTB3202 PF17944 Arginine decarboxylase C-terminal helical extension YPTB3202 PF17810 Arginine decarboxylase helical bundle domain YPTB3203 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPTB3203 PF02772 S-adenosylmethionine synthetase, central domain YPTB3203 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPTB3204 PF10263 SprT-like family YPTB3204 PF17283 SprT-like zinc ribbon domain YPTB3205 PF04231 Endonuclease I YPTB3206 PF04452 RNA methyltransferase YPTB3207 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPTB3207 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPTB3208 PF02622 Uncharacterized ACR, COG1678 YPTB3209 PF03652 Holliday junction resolvase YPTB3210 PF00795 Carbon-nitrogen hydrolase YPTB3211 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPTB3212 PF00437 Type II/IV secretion system protein YPTB3213 PF01168 Alanine racemase, N-terminal domain YPTB3214 PF03807 NADP oxidoreductase coenzyme F420-dependent YPTB3214 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPTB3215 PF02325 YGGT family YPTB3216 PF02594 Uncharacterised ACR, YggU family COG1872 YPTB3217 PF01725 Ham1 family YPTB3218 PF04055 Radical SAM superfamily YPTB3218 PF06969 HemN C-terminal domain YPTB3219 PF11647 Membrane Localization Domain YPTB3219 PF11713 Peptidase C80 family YPTB3219 PF12146 Serine aminopeptidase, S33 YPTB3219 PF16671 Actin cross-linking domain YPTB3219 PF07634 RtxA repeat YPTB3220 PF11101 Protein of unknown function (DUF2884) YPTB3221 PF04960 Glutaminase YPTB3222 PF04320 Protein with unknown function (DUF469) YPTB3223 PF02390 Putative methyltransferase YPTB3224 PF10576 Iron-sulfur binding domain of endonuclease III YPTB3224 PF00633 Helix-hairpin-helix motif YPTB3224 PF14815 NUDIX domain YPTB3224 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTB3225 PF04362 Bacterial Fe(2+) trafficking YPTB3226 PF01464 Transglycosylase SLT domain YPTB3226 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPTB3228 PF07715 TonB-dependent Receptor Plug Domain YPTB3229 PF02653 Branched-chain amino acid transport system / permease component YPTB3230 PF00005 ABC transporter YPTB3231 PF13407 Periplasmic binding protein domain YPTB3232 PF01276 Orn/Lys/Arg decarboxylase, major domain YPTB3232 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPTB3232 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPTB3236 PF03811 InsA N-terminal domain YPTB3236 PF12759 InsA C-terminal domain YPTB3242 PF12759 InsA C-terminal domain YPTB3242 PF03811 InsA N-terminal domain YPTB3246 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB3246 PF17871 AAA lid domain YPTB3246 PF00004 ATPase family associated with various cellular activities (AAA) YPTB3246 PF07724 AAA domain (Cdc48 subfamily) YPTB3248 PF00691 OmpA family YPTB3248 PF05736 OprF membrane domain YPTB3255 PF12759 InsA C-terminal domain YPTB3255 PF03811 InsA N-terminal domain YPTB3257 PF02517 CPBP intramembrane metalloprotease YPTB3258 PF00765 Autoinducer synthase YPTB3259 PF03472 Autoinducer binding domain YPTB3259 PF00196 Bacterial regulatory proteins, luxR family YPTB3263 PF06276 Ferric iron reductase FhuF-like transporter YPTB3263 PF04183 IucA / IucC family YPTB3265 PF06276 Ferric iron reductase FhuF-like transporter YPTB3265 PF04183 IucA / IucC family YPTB3266 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPTB3267 PF00593 TonB dependent receptor YPTB3267 PF07715 TonB-dependent Receptor Plug Domain YPTB3270 PF00356 Bacterial regulatory proteins, lacI family YPTB3271 PF00939 Sodium:sulfate symporter transmembrane region YPTB3282 PF03527 RHS protein YPTB3282 PF05593 RHS Repeat YPTB3284 PF04717 Type VI secretion system, phage-baseplate injector YPTB3285 PF12951 Passenger-associated-transport-repeat YPTB3286 PF12951 Passenger-associated-transport-repeat YPTB3287 PF02447 GntP family permease YPTB3290 PF00664 ABC transporter transmembrane region YPTB3290 PF00005 ABC transporter YPTB3291 PF08021 Siderophore-interacting FAD-binding domain YPTB3291 PF00005 ABC transporter YPTB3291 PF04954 Siderophore-interacting protein YPTB3291 PF00664 ABC transporter transmembrane region YPTB3293 PF00975 Thioesterase domain YPTB3296 PF00501 AMP-binding enzyme YPTB3296 PF00668 Condensation domain YPTB3296 PF08242 Methyltransferase domain YPTB3296 PF00550 Phosphopantetheine attachment site YPTB3297 PF00501 AMP-binding enzyme YPTB3297 PF00550 Phosphopantetheine attachment site YPTB3297 PF08242 Methyltransferase domain YPTB3297 PF00668 Condensation domain YPTB3298 PF00593 TonB dependent receptor YPTB3298 PF07715 TonB-dependent Receptor Plug Domain YPTB3299 PF01546 Peptidase family M20/M25/M40 YPTB3299 PF07687 Peptidase dimerisation domain YPTB3300 PF03806 AbgT putative transporter family YPTB3301 PF14496 C-terminal novel E3 ligase, LRR-interacting YPTB3301 PF12468 Type III secretion system leucine rich repeat protein YPTB3302 PF12468 Type III secretion system leucine rich repeat protein YPTB3302 PF14496 C-terminal novel E3 ligase, LRR-interacting YPTB3303 PF03797 Autotransporter beta-domain YPTB3305 PF07906 ShET2 enterotoxin, N-terminal region YPTB3306 PF00873 AcrB/AcrD/AcrF family YPTB3307 PF00529 HlyD membrane-fusion protein of T1SS YPTB3307 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB3308 PF13188 PAS domain YPTB3308 PF03707 Bacterial signalling protein N terminal repeat YPTB3308 PF00990 Diguanylate cyclase, GGDEF domain YPTB3308 PF00563 EAL domain YPTB3310 PF13333 Integrase core domain YPTB3310 PF00665 Integrase core domain YPTB3310 PF13276 HTH-like domain YPTB3311 PF00872 Transposase, Mutator family YPTB3313 PF05433 Glycine zipper 2TM domain YPTB3318 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPTB3318 PF00691 OmpA family YPTB3319 PF01618 MotA/TolQ/ExbB proton channel family YPTB3320 PF04545 Sigma-70, region 4 YPTB3320 PF04542 Sigma-70 region 2 YPTB3325 PF07196 Flagellin hook IN motif YPTB3325 PF07195 Flagellar hook-associated protein 2 C-terminus YPTB3325 PF02465 Flagellar hook-associated protein 2 N-terminus YPTB3326 PF07196 Flagellin hook IN motif YPTB3326 PF00669 Bacterial flagellin N-terminal helical region YPTB3326 PF00700 Bacterial flagellin C-terminal helical region YPTB3327 PF00486 Transcriptional regulatory protein, C terminal YPTB3327 PF18500 CadC C-terminal domain 1 YPTB3331 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB3331 PF00460 Flagella basal body rod protein YPTB3333 PF02119 Flagellar P-ring protein YPTB3334 PF02107 Flagellar L-ring protein YPTB3335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB3335 PF00460 Flagella basal body rod protein YPTB3336 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB3336 PF00460 Flagella basal body rod protein YPTB3337 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB3337 PF07559 Flagellar basal body protein FlaE YPTB3337 PF00460 Flagella basal body rod protein YPTB3338 PF13860 FlgD Ig-like domain YPTB3338 PF03963 Flagellar hook capping protein - N-terminal region YPTB3338 PF13861 FlgD Tudor-like domain YPTB3339 PF00460 Flagella basal body rod protein YPTB3339 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB3340 PF00460 Flagella basal body rod protein YPTB3341 PF13144 Chaperone for flagella basal body P-ring formation YPTB3345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB3345 PF18269 T3SS EscN ATPase C-terminal domain YPTB3348 PF08345 Flagellar M-ring protein C-terminal YPTB3348 PF01514 Secretory protein of YscJ/FliF family YPTB3349 PF02049 Flagellar hook-basal body complex protein FliE YPTB3350 PF00158 Sigma-54 interaction domain YPTB3350 PF02954 Bacterial regulatory protein, Fis family YPTB3350 PF00072 Response regulator receiver domain YPTB3352 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTB3353 PF00813 FliP family YPTB3354 PF01313 Bacterial export proteins, family 3 YPTB3355 PF01311 Bacterial export proteins, family 1 YPTB3356 PF01312 FlhB HrpN YscU SpaS Family YPTB3357 PF00771 FHIPEP family YPTB3360 PF01497 Periplasmic binding protein YPTB3361 PF00419 Fimbrial protein YPTB3361 PF09222 Fimbrial adhesin F17-AG, lectin domain YPTB3362 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB3362 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB3363 PF00577 Outer membrane usher protein YPTB3363 PF13954 PapC N-terminal domain YPTB3363 PF13953 PapC C-terminal domain YPTB3364 PF00419 Fimbrial protein YPTB3365 PF00704 Glycosyl hydrolases family 18 YPTB3366 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YPTB3366 PF18416 N-acetylglucosamine binding protein domain 2 YPTB3372 PF04972 BON domain YPTB3372 PF00263 Bacterial type II and III secretion system protein YPTB3372 PF13629 Pilus formation protein N terminal region YPTB3375 PF00437 Type II/IV secretion system protein YPTB3382 PF02472 Biopolymer transport protein ExbD/TolR YPTB3383 PF01618 MotA/TolQ/ExbB proton channel family YPTB3384 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTB3385 PF09335 SNARE associated Golgi protein YPTB3386 PF12833 Helix-turn-helix domain YPTB3386 PF06719 AraC-type transcriptional regulator N-terminus YPTB3387 PF00465 Iron-containing alcohol dehydrogenase YPTB3388 PF00248 Aldo/keto reductase family YPTB3389 PF04055 Radical SAM superfamily YPTB3389 PF08497 Radical SAM N-terminal YPTB3389 PF11842 Domain of unknown function (DUF3362) YPTB3390 PF07732 Multicopper oxidase YPTB3390 PF07731 Multicopper oxidase YPTB3391 PF01553 Acyltransferase YPTB3392 PF03989 DNA gyrase C-terminal domain, beta-propeller YPTB3392 PF00521 DNA gyrase/topoisomerase IV, subunit A YPTB3393 PF02525 Flavodoxin-like fold YPTB3394 PF03466 LysR substrate binding domain YPTB3394 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB3395 PF00986 DNA gyrase B subunit, carboxyl terminus YPTB3395 PF00204 DNA gyrase B YPTB3395 PF01751 Toprim domain YPTB3396 PF05728 Uncharacterised protein family (UPF0227) YPTB3397 PF00149 Calcineurin-like phosphoesterase YPTB3398 PF06853 Protein of unknown function (DUF1249) YPTB3399 PF00293 NUDIX domain YPTB3400 PF02321 Outer membrane efflux protein YPTB3401 PF06693 Protein of unknown function (DUF1190) YPTB3402 PF03738 Glutathionylspermidine synthase preATP-grasp YPTB3403 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPTB3404 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPTB3405 PF04380 Membrane fusogenic activity YPTB3406 PF13520 Amino acid permease YPTB3407 PF00294 pfkB family carbohydrate kinase YPTB3407 PF01467 Cytidylyltransferase-like YPTB3408 PF03710 Glutamate-ammonia ligase adenylyltransferase YPTB3408 PF08335 GlnD PII-uridylyltransferase YPTB3409 PF01928 CYTH domain YPTB3410 PF08239 Bacterial SH3 domain YPTB3411 PF01966 HD domain YPTB3411 PF01743 Poly A polymerase head domain YPTB3411 PF12627 Probable RNA and SrmB- binding site of polymerase A YPTB3412 PF02673 Bacitracin resistance protein BacA YPTB3413 PF02152 Dihydroneopterin aldolase YPTB3414 PF02660 Glycerol-3-phosphate acyltransferase YPTB3415 PF00814 Glycoprotease family YPTB3416 PF01165 Ribosomal protein S21 YPTB3417 PF01807 CHC2 zinc finger YPTB3417 PF08278 DNA primase DnaG DnaB-binding YPTB3417 PF08275 DNA primase catalytic core, N-terminal domain YPTB3417 PF10410 DnaB-helicase binding domain of primase YPTB3418 PF04546 Sigma-70, non-essential region YPTB3418 PF03979 Sigma-70 factor, region 1.1 YPTB3418 PF00140 Sigma-70 factor, region 1.2 YPTB3418 PF04539 Sigma-70 region 3 YPTB3418 PF04542 Sigma-70 region 2 YPTB3418 PF04545 Sigma-70, region 4 YPTB3424 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3424 PF03466 LysR substrate binding domain YPTB3428 PF01042 Endoribonuclease L-PSP YPTB3436 PF00529 HlyD membrane-fusion protein of T1SS YPTB3436 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB3437 PF04632 Fusaric acid resistance protein family YPTB3439 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPTB3439 PF00933 Glycosyl hydrolase family 3 N terminal domain YPTB3439 PF14310 Fibronectin type III-like domain YPTB3441 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3442 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3443 PF13416 Bacterial extracellular solute-binding protein YPTB3444 PF00356 Bacterial regulatory proteins, lacI family YPTB3445 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPTB3446 PF00005 ABC transporter YPTB3446 PF17912 MalK OB fold domain YPTB3446 PF03459 TOBE domain YPTB3455 PF07262 CDI immunity protein YPTB3460 PF13018 Extended Signal Peptide of Type V secretion system YPTB3460 PF13332 Hemagglutinin repeat YPTB3460 PF05860 haemagglutination activity domain YPTB3460 PF04829 Pre-toxin domain with VENN motif YPTB3461 PF17287 POTRA domain YPTB3461 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB3461 PF08479 POTRA domain, ShlB-type YPTB3462 PF00092 von Willebrand factor type A domain YPTB3463 PF02342 TerD domain YPTB3465 PF00092 von Willebrand factor type A domain YPTB3468 PF03729 Short repeat of unknown function (DUF308) YPTB3469 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTB3469 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB3470 PF05175 Methyltransferase small domain YPTB3471 PF03797 Autotransporter beta-domain YPTB3472 PF01863 Protein of unknown function DUF45 YPTB3473 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB3474 PF00375 Sodium:dicarboxylate symporter family YPTB3475 PF10688 Bacterial inner membrane protein YPTB3476 PF08666 SAF domain YPTB3476 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPTB3477 PF08125 Mannitol dehydrogenase C-terminal domain YPTB3477 PF01232 Mannitol dehydrogenase Rossmann domain YPTB3478 PF02614 Glucuronate isomerase YPTB3479 PF07690 Major Facilitator Superfamily YPTB3480 PF00392 Bacterial regulatory proteins, gntR family YPTB3480 PF07729 FCD domain YPTB3482 PF09335 SNARE associated Golgi protein YPTB3483 PF13721 SecD export protein N-terminal TM region YPTB3485 PF05957 Bacterial protein of unknown function (DUF883) YPTB3486 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPTB3488 PF07681 DoxX YPTB3489 PF13409 Glutathione S-transferase, N-terminal domain YPTB3490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3490 PF03466 LysR substrate binding domain YPTB3491 PF02678 Pirin YPTB3491 PF17954 Quercetinase C-terminal cupin domain YPTB3492 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTB3493 PF04348 LppC putative lipoprotein YPTB3494 PF02021 Uncharacterised protein family UPF0102 YPTB3495 PF13580 SIS domain YPTB3496 PF04972 BON domain YPTB3497 PF00912 Transglycosylase YPTB3500 PF01627 Hpt domain YPTB3500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB3500 PF00512 His Kinase A (phospho-acceptor) domain YPTB3500 PF00072 Response regulator receiver domain YPTB3500 PF00989 PAS fold YPTB3500 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPTB3501 PF16199 Radical_SAM C-terminal domain YPTB3501 PF04055 Radical SAM superfamily YPTB3502 PF01645 Conserved region in glutamate synthase YPTB3502 PF04898 Glutamate synthase central domain YPTB3502 PF00310 Glutamine amidotransferases class-II YPTB3502 PF01493 GXGXG motif YPTB3503 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB3503 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPTB3505 PF04386 Stringent starvation protein B YPTB3506 PF02798 Glutathione S-transferase, N-terminal domain YPTB3506 PF00043 Glutathione S-transferase, C-terminal domain YPTB3507 PF00380 Ribosomal protein S9/S16 YPTB3508 PF00572 Ribosomal protein L13 YPTB3509 PF03969 AFG1-like ATPase YPTB3510 PF06295 Protein of unknown function (DUF1043) YPTB3511 PF00595 PDZ domain YPTB3511 PF13180 PDZ domain YPTB3512 PF13180 PDZ domain YPTB3513 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPTB3514 PF01722 BolA-like protein YPTB3515 PF13466 STAS domain YPTB3516 PF05494 MlaC protein YPTB3517 PF02470 MlaD protein YPTB3518 PF02405 Permease MlaE YPTB3519 PF00005 ABC transporter YPTB3520 PF01699 Sodium/calcium exchanger protein YPTB3521 PF01380 SIS domain YPTB3521 PF00571 CBS domain YPTB3523 PF06835 Lipopolysaccharide-assembly, LptC-related YPTB3524 PF03968 OstA-like protein YPTB3525 PF00005 ABC transporter YPTB3525 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPTB3526 PF04552 Sigma-54, DNA binding domain YPTB3526 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPTB3526 PF04963 Sigma-54 factor, core binding domain YPTB3527 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPTB3528 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB3529 PF03668 P-loop ATPase protein family YPTB3530 PF00381 PTS HPr component phosphorylation site YPTB3531 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPTB3531 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPTB3532 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPTB3532 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPTB3533 PF01042 Endoribonuclease L-PSP YPTB3535 PF00356 Bacterial regulatory proteins, lacI family YPTB3536 PF00367 phosphotransferase system, EIIB YPTB3536 PF02378 Phosphotransferase system, EIIC YPTB3537 PF00128 Alpha amylase, catalytic domain YPTB3537 PF11941 Domain of unknown function (DUF3459) YPTB3538 PF14760 Rnk N-terminus YPTB3538 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTB3539 PF07361 Cytochrome b562 YPTB3541 PF01523 Putative modulator of DNA gyrase YPTB3542 PF04751 Protein of unknown function (DUF615) YPTB3543 PF01337 Barstar (barnase inhibitor) YPTB3545 PF00171 Aldehyde dehydrogenase family YPTB3546 PF04632 Fusaric acid resistance protein family YPTB3547 PF13533 Biotin-lipoyl like YPTB3548 PF07869 Protein of unknown function (DUF1656) YPTB3549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3549 PF03466 LysR substrate binding domain YPTB3550 PF03466 LysR substrate binding domain YPTB3550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB3552 PF18413 Neuraminidase-like domain YPTB3552 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPTB3553 PF03534 Salmonella virulence plasmid 65kDa B protein YPTB3553 PF12255 Insecticide toxin TcdB middle/C-terminal region YPTB3553 PF12256 Insecticide toxin TcdB middle/N-terminal region YPTB3557 PF18807 Tripartite Tc toxins repeat YPTB3557 PF14431 YwqJ-like deaminase YPTB3558 PF01523 Putative modulator of DNA gyrase YPTB3559 PF00795 Carbon-nitrogen hydrolase YPTB3560 PF13116 Protein of unknown function YPTB3560 PF13502 AsmA-like C-terminal region YPTB3561 PF10150 Ribonuclease E/G family YPTB3561 PF00575 S1 RNA binding domain YPTB3562 PF02545 Maf-like protein YPTB3563 PF04093 rod shape-determining protein MreD YPTB3564 PF04085 rod shape-determining protein MreC YPTB3566 PF00990 Diguanylate cyclase, GGDEF domain YPTB3566 PF17157 Gammaproteobacterial periplasmic sensor domain YPTB3566 PF00563 EAL domain YPTB3567 PF00107 Zinc-binding dehydrogenase YPTB3567 PF08240 Alcohol dehydrogenase GroES-like domain YPTB3568 PF00174 Oxidoreductase molybdopterin binding domain YPTB3569 PF01794 Ferric reductase like transmembrane component YPTB3570 PF01220 Dehydroquinase class II YPTB3571 PF00364 Biotin-requiring enzyme YPTB3572 PF00289 Biotin carboxylase, N-terminal domain YPTB3572 PF02785 Biotin carboxylase C-terminal domain YPTB3572 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPTB3573 PF06196 Protein of unknown function (DUF997) YPTB3574 PF00474 Sodium:solute symporter family YPTB3576 PF01207 Dihydrouridine synthase (Dus) YPTB3577 PF02954 Bacterial regulatory protein, Fis family YPTB3580 PF07690 Major Facilitator Superfamily YPTB3581 PF02627 Carboxymuconolactone decarboxylase family YPTB3582 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPTB3582 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPTB3583 PF00753 Metallo-beta-lactamase superfamily YPTB3584 PF05433 Glycine zipper 2TM domain YPTB3585 PF00313 'Cold-shock' DNA-binding domain YPTB3586 PF00313 'Cold-shock' DNA-binding domain YPTB3587 PF00313 'Cold-shock' DNA-binding domain YPTB3590 PF02798 Glutathione S-transferase, N-terminal domain YPTB3591 PF00571 CBS domain YPTB3591 PF01380 SIS domain YPTB3592 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB3592 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB3594 PF02653 Branched-chain amino acid transport system / permease component YPTB3595 PF00005 ABC transporter YPTB3597 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTB3599 PF00999 Sodium/hydrogen exchanger family YPTB3600 PF00860 Permease family YPTB3601 PF04221 RelB antitoxin YPTB3602 PF00005 ABC transporter YPTB3603 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3604 PF00296 Luciferase-like monooxygenase YPTB3605 PF09084 NMT1/THI5 like YPTB3606 PF03358 NADPH-dependent FMN reductase YPTB3608 PF00294 pfkB family carbohydrate kinase YPTB3609 PF05025 RbsD / FucU transport protein family YPTB3610 PF02311 AraC-like ligand binding domain YPTB3610 PF12833 Helix-turn-helix domain YPTB3611 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB3611 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB3613 PF04717 Type VI secretion system, phage-baseplate injector YPTB3615 PF05593 RHS Repeat YPTB3615 PF03527 RHS protein YPTB3617 PF04717 Type VI secretion system, phage-baseplate injector YPTB3621 PF03527 RHS protein YPTB3621 PF14220 Domain of unknown function (DUF4329) YPTB3621 PF05593 RHS Repeat YPTB3623 PF04717 Type VI secretion system, phage-baseplate injector YPTB3629 PF17871 AAA lid domain YPTB3629 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB3629 PF07724 AAA domain (Cdc48 subfamily) YPTB3629 PF00004 ATPase family associated with various cellular activities (AAA) YPTB3639 PF05638 Type VI secretion system effector, Hcp YPTB3641 PF07148 Maltose operon periplasmic protein precursor (MalM) YPTB3642 PF02264 LamB porin YPTB3643 PF17912 MalK OB fold domain YPTB3643 PF00005 ABC transporter YPTB3645 PF01547 Bacterial extracellular solute-binding protein YPTB3646 PF14785 Maltose transport system permease protein MalF P2 domain YPTB3646 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3647 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3648 PF06146 Phosphate-starvation-inducible E YPTB3649 PF00342 Phosphoglucose isomerase YPTB3650 PF01842 ACT domain YPTB3650 PF00696 Amino acid kinase family YPTB3652 PF13332 Hemagglutinin repeat YPTB3652 PF05860 haemagglutination activity domain YPTB3653 PF02607 B12 binding domain YPTB3653 PF02310 B12 binding domain YPTB3653 PF00809 Pterin binding enzyme YPTB3653 PF02574 Homocysteine S-methyltransferase YPTB3653 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPTB3654 PF01614 Bacterial transcriptional regulator YPTB3654 PF09339 IclR helix-turn-helix domain YPTB3655 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPTB3656 PF00463 Isocitrate lyase family YPTB3657 PF01274 Malate synthase YPTB3658 PF04204 Homoserine O-succinyltransferase YPTB3659 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB3660 PF08501 Shikimate dehydrogenase substrate binding domain YPTB3660 PF01488 Shikimate / quinate 5-dehydrogenase YPTB3660 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPTB3661 PF01300 Telomere recombination YPTB3662 PF01396 Topoisomerase DNA binding C4 zinc finger YPTB3663 PF04361 Protein of unknown function (DUF494) YPTB3664 PF02481 DNA recombination-mediator protein A YPTB3664 PF17782 DprA winged helix domain YPTB3665 PF01327 Polypeptide deformylase YPTB3666 PF00551 Formyl transferase YPTB3666 PF02911 Formyl transferase, C-terminal domain YPTB3667 PF01189 16S rRNA methyltransferase RsmB/F YPTB3667 PF01029 NusB family YPTB3668 PF02254 TrkA-N domain YPTB3668 PF02080 TrkA-C domain YPTB3669 PF01741 Large-conductance mechanosensitive channel, MscL YPTB3670 PF03889 Alternative ribosome-rescue factor A YPTB3671 PF13411 MerR HTH family regulatory protein YPTB3672 PF01196 Ribosomal protein L17 YPTB3673 PF01000 RNA polymerase Rpb3/RpoA insert domain YPTB3673 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPTB3673 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPTB3674 PF00163 Ribosomal protein S4/S9 N-terminal domain YPTB3674 PF01479 S4 domain YPTB3675 PF00411 Ribosomal protein S11 YPTB3676 PF00416 Ribosomal protein S13/S18 YPTB3677 PF00444 Ribosomal protein L36 YPTB3678 PF00344 SecY translocase YPTB3679 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPTB3680 PF00327 Ribosomal protein L30p/L7e YPTB3681 PF03719 Ribosomal protein S5, C-terminal domain YPTB3681 PF00333 Ribosomal protein S5, N-terminal domain YPTB3682 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPTB3683 PF00347 Ribosomal protein L6 YPTB3684 PF00410 Ribosomal protein S8 YPTB3685 PF00253 Ribosomal protein S14p/S29e YPTB3686 PF00281 Ribosomal protein L5 YPTB3686 PF00673 ribosomal L5P family C-terminus YPTB3687 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPTB3687 PF00467 KOW motif YPTB3688 PF00238 Ribosomal protein L14p/L23e YPTB3689 PF00366 Ribosomal protein S17 YPTB3690 PF00831 Ribosomal L29 protein YPTB3691 PF00252 Ribosomal protein L16p/L10e YPTB3692 PF07650 KH domain YPTB3692 PF00189 Ribosomal protein S3, C-terminal domain YPTB3693 PF00237 Ribosomal protein L22p/L17e YPTB3694 PF00203 Ribosomal protein S19 YPTB3695 PF03947 Ribosomal Proteins L2, C-terminal domain YPTB3695 PF00181 Ribosomal Proteins L2, RNA binding domain YPTB3696 PF00276 Ribosomal protein L23 YPTB3697 PF00573 Ribosomal protein L4/L1 family YPTB3698 PF00297 Ribosomal protein L3 YPTB3699 PF00338 Ribosomal protein S10p/S20e YPTB3700 PF00210 Ferritin-like domain YPTB3701 PF04324 BFD-like [2Fe-2S] binding domain YPTB3702 PF00009 Elongation factor Tu GTP binding domain YPTB3702 PF03144 Elongation factor Tu domain 2 YPTB3702 PF03143 Elongation factor Tu C-terminal domain YPTB3703 PF14492 Elongation Factor G, domain II YPTB3703 PF03764 Elongation factor G, domain IV YPTB3703 PF00009 Elongation factor Tu GTP binding domain YPTB3703 PF00679 Elongation factor G C-terminus YPTB3703 PF03144 Elongation factor Tu domain 2 YPTB3704 PF00177 Ribosomal protein S7p/S5e YPTB3705 PF00164 Ribosomal protein S12/S23 YPTB3706 PF04077 DsrH like protein YPTB3707 PF02635 DsrE/DsrF-like family YPTB3708 PF02635 DsrE/DsrF-like family YPTB3709 PF08348 YheO-like PAS domain YPTB3709 PF13309 HTH domain YPTB3710 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPTB3710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB3711 PF04102 SlyX YPTB3712 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB3713 PF09526 Probable metal-binding protein (DUF2387) YPTB3714 PF02254 TrkA-N domain YPTB3714 PF00999 Sodium/hydrogen exchanger family YPTB3715 PF02525 Flavodoxin-like fold YPTB3716 PF12848 ABC transporter YPTB3716 PF00005 ABC transporter YPTB3717 PF00535 Glycosyl transferase family 2 YPTB3719 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPTB3720 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3721 PF00005 ABC transporter YPTB3722 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTB3723 PF01810 LysE type translocator YPTB3724 PF00561 alpha/beta hydrolase fold YPTB3725 PF06794 Uncharacterised protein family (UPF0270) YPTB3726 PF00485 Phosphoribulokinase / Uridine kinase family YPTB3728 PF02566 OsmC-like protein YPTB3729 PF00027 Cyclic nucleotide-binding domain YPTB3729 PF13545 Crp-like helix-turn-helix domain YPTB3730 PF12805 FUSC-like inner membrane protein yccS YPTB3731 PF00202 Aminotransferase class-III YPTB3732 PF00117 Glutamine amidotransferase class-I YPTB3733 PF05872 Bacterial protein of unknown function (DUF853) YPTB3734 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPTB3735 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPTB3735 PF02056 Family 4 glycosyl hydrolase YPTB3736 PF00356 Bacterial regulatory proteins, lacI family YPTB3738 PF07690 Major Facilitator Superfamily YPTB3739 PF07969 Amidohydrolase family YPTB3740 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB3740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPTB3740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPTB3740 PF04324 BFD-like [2Fe-2S] binding domain YPTB3740 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPTB3741 PF13806 Rieske-like [2Fe-2S] domain YPTB3742 PF01226 Formate/nitrite transporter YPTB3743 PF10414 Sirohaem synthase dimerisation region YPTB3743 PF14824 Sirohaem biosynthesis protein central YPTB3743 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTB3744 PF00579 tRNA synthetases class I (W and Y) YPTB3745 PF13419 Haloacid dehalogenase-like hydrolase YPTB3746 PF00834 Ribulose-phosphate 3 epimerase family YPTB3747 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPTB3748 PF05036 Sporulation related domain YPTB3749 PF01761 3-dehydroquinate synthase YPTB3750 PF01202 Shikimate kinase YPTB3751 PF03958 Bacterial type II/III secretion system short domain YPTB3751 PF00263 Bacterial type II and III secretion system protein YPTB3756 PF00912 Transglycosylase YPTB3756 PF00905 Penicillin binding protein transpeptidase domain YPTB3756 PF17092 Penicillin-binding protein OB-like domain YPTB3757 PF00293 NUDIX domain YPTB3758 PF07095 Intracellular growth attenuator protein IgaA YPTB3759 PF13419 Haloacid dehalogenase-like hydrolase YPTB3760 PF01479 S4 domain YPTB3761 PF01430 Hsp33 protein YPTB3762 PF01293 Phosphoenolpyruvate carboxykinase YPTB3763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB3763 PF00672 HAMP domain YPTB3763 PF00512 His Kinase A (phospho-acceptor) domain YPTB3764 PF00072 Response regulator receiver domain YPTB3764 PF00486 Transcriptional regulatory protein, C terminal YPTB3765 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTB3765 PF03449 Transcription elongation factor, N-terminal YPTB3766 PF17674 HHH domain YPTB3766 PF00575 S1 RNA binding domain YPTB3766 PF16921 Tex protein YqgF-like domain YPTB3766 PF09371 Tex-like protein N-terminal domain YPTB3767 PF04023 FeoA domain YPTB3768 PF02421 Ferrous iron transport protein B YPTB3768 PF07664 Ferrous iron transport protein B C terminus YPTB3768 PF07670 Nucleoside recognition YPTB3768 PF17910 FeoB cytosolic helical domain YPTB3769 PF09012 FeoC like transcriptional regulator YPTB3770 PF07338 Protein of unknown function (DUF1471) YPTB3771 PF00561 alpha/beta hydrolase fold YPTB3772 PF00156 Phosphoribosyl transferase domain YPTB3773 PF01106 NifU-like domain YPTB3773 PF01521 Iron-sulphur cluster biosynthesis YPTB3774 PF02446 4-alpha-glucanotransferase YPTB3775 PF00343 Carbohydrate phosphorylase YPTB3776 PF17874 MalT-like TPR region YPTB3776 PF00196 Bacterial regulatory proteins, luxR family YPTB3777 PF00581 Rhodanese-like domain YPTB3778 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPTB3778 PF01694 Rhomboid family YPTB3779 PF00455 DeoR C terminal sensor domain YPTB3779 PF08220 DeoR-like helix-turn-helix domain YPTB3782 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPTB3782 PF01266 FAD dependent oxidoreductase YPTB3783 PF00343 Carbohydrate phosphorylase YPTB3784 PF00534 Glycosyl transferases group 1 YPTB3784 PF08323 Starch synthase catalytic domain YPTB3785 PF00483 Nucleotidyl transferase YPTB3786 PF00128 Alpha amylase, catalytic domain YPTB3786 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPTB3786 PF18390 Glycogen debranching enzyme C-terminal domain YPTB3787 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPTB3787 PF02806 Alpha amylase, C-terminal all-beta domain YPTB3787 PF00128 Alpha amylase, catalytic domain YPTB3788 PF06580 Histidine kinase YPTB3788 PF07694 5TMR of 5TMR-LYT YPTB3789 PF09134 Invasin, domain 3 YPTB3789 PF07979 Intimin C-type lectin domain YPTB3789 PF11924 Inverse autotransporter, beta-domain YPTB3789 PF02369 Bacterial Ig-like domain (group 1) YPTB3790 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTB3790 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTB3791 PF01914 MarC family integral membrane protein YPTB3795 PF05638 Type VI secretion system effector, Hcp YPTB3796 PF01202 Shikimate kinase YPTB3797 PF02447 GntP family permease YPTB3798 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB3798 PF00356 Bacterial regulatory proteins, lacI family YPTB3799 PF17954 Quercetinase C-terminal cupin domain YPTB3799 PF02678 Pirin YPTB3801 PF00072 Response regulator receiver domain YPTB3801 PF00486 Transcriptional regulatory protein, C terminal YPTB3803 PF01116 Fructose-bisphosphate aldolase class-II YPTB3805 PF13407 Periplasmic binding protein domain YPTB3806 PF02653 Branched-chain amino acid transport system / permease component YPTB3807 PF00005 ABC transporter YPTB3808 PF00512 His Kinase A (phospho-acceptor) domain YPTB3808 PF08448 PAS fold YPTB3808 PF00072 Response regulator receiver domain YPTB3808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB3808 PF13188 PAS domain YPTB3810 PF01384 Phosphate transporter family YPTB3811 PF10625 Universal stress protein B (UspB) YPTB3812 PF00582 Universal stress protein family YPTB3813 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPTB3813 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPTB3814 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPTB3814 PF08548 Peptidase M10 serralysin C terminal YPTB3814 PF00413 Matrixin YPTB3815 PF04445 Putative SAM-dependent methyltransferase YPTB3816 PF01432 Peptidase family M3 YPTB3817 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPTB3818 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB3818 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB3819 PF05651 Putative sugar diacid recognition YPTB3819 PF17853 GGDEF-like domain YPTB3819 PF13556 PucR C-terminal helix-turn-helix domain YPTB3820 PF02447 GntP family permease YPTB3821 PF02595 Glycerate kinase family YPTB3825 PF03631 Virulence factor BrkB YPTB3826 PF02611 CDP-diacylglycerol pyrophosphatase YPTB3827 PF05170 AsmA family YPTB3828 PF00563 EAL domain YPTB3829 PF01361 Tautomerase enzyme YPTB3830 PF00294 pfkB family carbohydrate kinase YPTB3831 PF00675 Insulinase (Peptidase family M16) YPTB3831 PF05193 Peptidase M16 inactive domain YPTB3832 PF00375 Sodium:dicarboxylate symporter family YPTB3834 PF06917 Periplasmic pectate lyase YPTB3835 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPTB3836 PF00563 EAL domain YPTB3836 PF17154 Gammaproteobacterial periplasmic sensor domain YPTB3836 PF00672 HAMP domain YPTB3836 PF00990 Diguanylate cyclase, GGDEF domain YPTB3837 PF01270 Glycosyl hydrolases family 8 YPTB3838 PF00005 ABC transporter YPTB3838 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB3839 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB3839 PF00005 ABC transporter YPTB3840 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3840 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB3841 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3842 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB3843 PF17287 POTRA domain YPTB3843 PF08479 POTRA domain, ShlB-type YPTB3843 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB3844 PF13332 Hemagglutinin repeat YPTB3844 PF05860 haemagglutination activity domain YPTB3844 PF04829 Pre-toxin domain with VENN motif YPTB3844 PF05594 Haemagluttinin repeat YPTB3845 PF07690 Major Facilitator Superfamily YPTB3846 PF05231 MASE1 YPTB3846 PF07730 Histidine kinase YPTB3846 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB3847 PF00196 Bacterial regulatory proteins, luxR family YPTB3847 PF00072 Response regulator receiver domain YPTB3848 PF08019 Phosphoethanolamine transferase EptA/EptB YPTB3848 PF00884 Sulfatase YPTB3849 PF12146 Serine aminopeptidase, S33 YPTB3850 PF00324 Amino acid permease YPTB3851 PF00221 Aromatic amino acid lyase YPTB3852 PF01175 Urocanase Rossmann-like domain YPTB3852 PF17391 Urocanase N-terminal domain YPTB3852 PF17392 Urocanase C-terminal domain YPTB3857 PF01497 Periplasmic binding protein YPTB3858 PF01032 FecCD transport family YPTB3859 PF01032 FecCD transport family YPTB3860 PF00005 ABC transporter YPTB3864 PF00589 Phage integrase family YPTB3864 PF13356 Arm DNA-binding domain YPTB3866 PF06755 CbtA_toxin of type IV toxin-antitoxin system YPTB3867 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YPTB3868 PF04002 RadC-like JAB domain YPTB3872 PF01695 IstB-like ATP binding protein YPTB3875 PF00665 Integrase core domain YPTB3875 PF02796 Helix-turn-helix domain of resolvase YPTB3876 PF01695 IstB-like ATP binding protein YPTB3879 PF18766 SWI2/SNF2 ATPase YPTB3879 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPTB3879 PF11867 Domain of unknown function (DUF3387) YPTB3881 PF01420 Type I restriction modification DNA specificity domain YPTB3882 PF02384 N-6 DNA Methylase YPTB3882 PF12161 HsdM N-terminal domain YPTB3886 PF13356 Arm DNA-binding domain YPTB3886 PF00589 Phage integrase family YPTB3886 PF14659 Phage integrase, N-terminal SAM-like domain YPTB3887 PF12833 Helix-turn-helix domain YPTB3888 PF02653 Branched-chain amino acid transport system / permease component YPTB3889 PF00005 ABC transporter YPTB3890 PF13407 Periplasmic binding protein domain YPTB3892 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB3892 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB3894 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB3894 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB3895 PF13954 PapC N-terminal domain YPTB3895 PF13953 PapC C-terminal domain YPTB3895 PF00577 Outer membrane usher protein YPTB3896 PF00419 Fimbrial protein YPTB3897 PF01757 Acyltransferase family YPTB3899 PF13333 Integrase core domain YPTB3899 PF00665 Integrase core domain YPTB3899 PF13276 HTH-like domain YPTB3900 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPTB3901 PF00291 Pyridoxal-phosphate dependent enzyme YPTB3901 PF13291 ACT domain YPTB3902 PF12566 Protein of unknown function (DUF3748) YPTB3902 PF07676 WD40-like Beta Propeller Repeat YPTB3903 PF07119 Protein of unknown function (DUF1375) YPTB3904 PF00011 Hsp20/alpha crystallin family YPTB3905 PF00011 Hsp20/alpha crystallin family YPTB3906 PF02080 TrkA-C domain YPTB3906 PF06826 Predicted Permease Membrane Region YPTB3907 PF00155 Aminotransferase class I and II YPTB3909 PF00128 Alpha amylase, catalytic domain YPTB3910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB3910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB3912 PF00691 OmpA family YPTB3912 PF13488 Glycine zipper YPTB3914 PF03352 Methyladenine glycosylase YPTB3915 PF02091 Glycyl-tRNA synthetase alpha subunit YPTB3916 PF05746 DALR anticodon binding domain YPTB3916 PF02092 Glycyl-tRNA synthetase beta subunit YPTB3917 PF11254 Protein of unknown function (DUF3053) YPTB3918 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB3918 PF02378 Phosphotransferase system, EIIC YPTB3918 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB3919 PF08125 Mannitol dehydrogenase C-terminal domain YPTB3919 PF01232 Mannitol dehydrogenase Rossmann domain YPTB3920 PF05068 Mannitol repressor YPTB3921 PF10928 Protein of unknown function (DUF2810) YPTB3924 PF00672 HAMP domain YPTB3924 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB3924 PF02203 Tar ligand binding domain homologue YPTB3925 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPTB3925 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPTB3926 PF02634 FdhD/NarQ family YPTB3928 PF09163 Formate dehydrogenase N, transmembrane YPTB3928 PF13247 4Fe-4S dicluster domain YPTB3929 PF01292 Prokaryotic cytochrome b561 YPTB3930 PF04216 Protein involved in formate dehydrogenase formation YPTB3931 PF03841 L-seryl-tRNA selenium transferase YPTB3931 PF12390 Selenocysteine synthase N terminal YPTB3932 PF09107 Elongation factor SelB, winged helix YPTB3932 PF09106 Elongation factor SelB, winged helix YPTB3932 PF03144 Elongation factor Tu domain 2 YPTB3932 PF00009 Elongation factor Tu GTP binding domain YPTB3936 PF07690 Major Facilitator Superfamily YPTB3937 PF13276 HTH-like domain YPTB3937 PF00665 Integrase core domain YPTB3937 PF13333 Integrase core domain YPTB3940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB3940 PF00986 DNA gyrase B subunit, carboxyl terminus YPTB3940 PF00204 DNA gyrase B YPTB3940 PF01751 Toprim domain YPTB3940 PF18053 DNA gyrase B subunit insert domain YPTB3941 PF02463 RecF/RecN/SMC N terminal domain YPTB3942 PF00712 DNA polymerase III beta subunit, N-terminal domain YPTB3942 PF02767 DNA polymerase III beta subunit, central domain YPTB3942 PF02768 DNA polymerase III beta subunit, C-terminal domain YPTB3943 PF08299 Bacterial dnaA protein helix-turn-helix YPTB3943 PF11638 DnaA N-terminal domain YPTB3943 PF00308 Bacterial dnaA protein YPTB3945 PF00468 Ribosomal protein L34 YPTB3946 PF00825 Ribonuclease P YPTB3947 PF01809 Putative membrane protein insertion efficiency factor YPTB3948 PF14849 YidC periplasmic domain YPTB3948 PF02096 60Kd inner membrane protein YPTB3949 PF10396 GTP-binding protein TrmE N-terminus YPTB3949 PF12631 MnmE helical domain YPTB3949 PF01926 50S ribosome-binding GTPase YPTB3950 PF07055 Enoyl reductase FAD binding domain YPTB3950 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPTB3950 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPTB3953 PF00860 Permease family YPTB3954 PF13419 Haloacid dehalogenase-like hydrolase YPTB3955 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3956 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3957 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB3959 PF01895 PhoU domain YPTB3960 PF00005 ABC transporter YPTB3961 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3962 PF00528 Binding-protein-dependent transport system inner membrane component YPTB3963 PF12849 PBP superfamily domain YPTB3964 PF01380 SIS domain YPTB3965 PF12804 MobA-like NTP transferase domain YPTB3965 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB3966 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPTB3966 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPTB3967 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB3967 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPTB3968 PF00231 ATP synthase YPTB3969 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB3969 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPTB3969 PF00306 ATP synthase alpha/beta chain, C terminal domain YPTB3970 PF00213 ATP synthase delta (OSCP) subunit YPTB3971 PF00430 ATP synthase B/B' CF(0) YPTB3972 PF00137 ATP synthase subunit C YPTB3973 PF00119 ATP synthase A chain YPTB3974 PF03899 ATP synthase I chain YPTB3975 PF02527 rRNA small subunit methyltransferase G YPTB3976 PF01134 Glucose inhibited division protein A YPTB3976 PF13932 GidA associated domain pYV0001 PF09632 Rac1-binding domain pYV0001 PF00069 Protein kinase domain pYV0005 PF02387 IncFII RepA protein family pYV0007 PF10723 Replication regulatory protein RepB pYV0010 PF07057 DNA helicase TraI pYV0010 PF18272 single-stranded DNA binding TraI N-terminal subdomain pYV0010 PF18340 DNA relaxase TraI 2B/2B-like domain pYV0010 PF08751 TrwC relaxase pYV0013 PF05662 Coiled stalk of trimeric autotransporter adhesin pYV0013 PF05658 Head domain of trimeric autotransporter adhesin pYV0013 PF03895 YadA-like membrane anchor domain pYV0016 PF01526 Tn3 transposase DDE domain pYV0016 PF13700 Domain of unknown function (DUF4158) pYV0017 PF00239 Resolvase, N terminal domain pYV0017 PF02796 Helix-turn-helix domain of resolvase pYV0018 PF01527 Transposase pYV0019 PF13683 Integrase core domain pYV0019 PF13276 HTH-like domain pYV0021 PF01695 IstB-like ATP binding protein pYV0022 PF00665 Integrase core domain pYV0023 PF13276 HTH-like domain pYV0023 PF13683 Integrase core domain pYV0024 PF05932 Tir chaperone protein (CesT) family pYV0025 PF03545 Yersinia virulence determinant (YopE) pYV0025 PF09020 YopE, N terminal pYV0027 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH pYV0031 PF02195 ParB-like nuclease domain pYV0031 PF18090 Centromere-binding protein HTH domain pYV0032 PF13614 AAA domain pYV0035 PF00665 Integrase core domain pYV0041 PF03543 Yersinia/Haemophilus virulence surface antigen pYV0042 PF05932 Tir chaperone protein (CesT) family pYV0047 PF12468 Type III secretion system leucine rich repeat protein pYV0047 PF12468 Type III secretion system leucine rich repeat protein pYV0051 PF13610 DDE domain pYV0054 PF05844 YopD protein pYV0055 PF04888 Secretion system effector C (SseC) like family pYV0056 PF07720 Tetratricopeptide repeat pYV0057 PF04792 V antigen (LcrV) protein pYV0058 PF07216 LcrG protein pYV0059 PF09621 Type III secretion system regulator (LcrR) pYV0060 PF00771 FHIPEP family pYV0062 PF09474 Type III secretion system YscX (type_III_YscX) pYV0064 PF09059 TyeA pYV0065 PF07201 HrpJ-like domain pYV0067 PF18269 T3SS EscN ATPase C-terminal domain pYV0067 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain pYV0067 PF02874 ATP synthase alpha/beta family, beta-barrel domain pYV0068 PF07321 Type III secretion protein YscO pYV0069 PF02120 Flagellar hook-length control protein FliK pYV0070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term pYV0071 PF00813 FliP family pYV0072 PF01313 Bacterial export proteins, family 3 pYV0073 PF01311 Bacterial export proteins, family 1 pYV0074 PF01312 FlhB HrpN YscU SpaS Family pYV0076 PF12833 Helix-turn-helix domain pYV0076 PF02311 AraC-like ligand binding domain pYV0077 PF17551 Family of unknown function (DUF5463) pYV0078 PF05932 Tir chaperone protein (CesT) family pYV0080 PF16697 Inner membrane component of T3SS, cytoplasmic domain pYV0080 PF16693 Inner membrane component of T3SS, periplasmic domain pYV0081 PF08988 Type III secretion system, cytoplasmic E component of needle pYV0082 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF pYV0083 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) pYV0084 PF09025 YopR, type III needle-polymerisation regulator pYV0085 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI pYV0086 PF01514 Secretory protein of YscJ/FliF family pYV0087 PF06578 YOP proteins translocation protein K (YscK) pYV0088 PF02108 Flagellar assembly protein FliH pYV0089 PF09013 YopH, N-terminal pYV0090 PF01527 Transposase pYV0094 PF00102 Protein-tyrosine phosphatase pYV0094 PF09013 YopH, N-terminal pYV0095 PF13683 Integrase core domain pYV0095 PF13276 HTH-like domain pYptb0004 PF01464 Transglycosylase SLT domain pYptb0006 PF03135 CagE, TrbE, VirB family, component of type IV transporter system pYptb0008 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system pYptb0009 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system pYptb0012 PF04335 VirB8 protein pYptb0013 PF03524 Conjugal transfer protein pYptb0014 PF03743 Bacterial conjugation TrbI-like protein pYptb0015 PF00437 Type II/IV secretion system protein pYptb0020 PF00816 H-NS histone family pYptb0031 PF01131 DNA topoisomerase pYptb0031 PF01751 Toprim domain pYptb0035 PF13362 Toprim domain pYptb0035 PF18818 Metallopeptidase superfamily domain pYptb0035 PF08401 Domain of unknown function (DUF1738) pYptb0037 PF00376 MerR family regulatory protein pYptb0037 PF13614 AAA domain