YPTB0001	PF00258	Flavodoxin
YPTB0002	PF01037	AsnC family
YPTB0002	PF13412	Winged helix-turn-helix DNA-binding
YPTB0003	PF03590	Aspartate-ammonia ligase
YPTB0004	PF05762	VWA domain containing CoxE-like protein
YPTB0005	PF07728	AAA domain (dynein-related subfamily)
YPTB0005	PF12592	Protein of unknown function (DUF3763)
YPTB0006	PF02705	YPTB0006
YPTB0007	PF05025	RbsD / FucU transport protein family
YPTB0008	PF00294	pfkB family carbohydrate kinase
YPTB0010	PF07690	Major Facilitator Superfamily
YPTB0011	PF00392	Bacterial regulatory proteins, gntR family
YPTB0011	PF07729	FCD domain
YPTB0012	PF00872	YPTB0012
YPTB0013	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
YPTB0015	PF06288	Protein of unknown function (DUF1040)
YPTB0016	PF01636	Phosphotransferase enzyme family
YPTB0017	PF01323	DSBA-like thioredoxin domain
YPTB0018	PF00476	DNA polymerase family A
YPTB0018	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPTB0018	PF01612	3'-5' exonuclease
YPTB0018	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPTB0019	PF01926	50S ribosome-binding GTPase
YPTB0020	PF04220	YPTB0020
YPTB0021	PF04055	Radical SAM superfamily
YPTB0021	PF06969	HemN C-terminal domain
YPTB0022	PF00072	Response regulator receiver domain
YPTB0022	PF00158	Sigma-54 interaction domain
YPTB0022	PF02954	Bacterial regulatory protein, Fis family
YPTB0023	PF00512	His Kinase A (phospho-acceptor) domain
YPTB0023	PF00989	PAS fold
YPTB0023	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB0024	PF00120	Glutamine synthetase, catalytic domain
YPTB0024	PF03951	Glutamine synthetase, beta-Grasp domain
YPTB0025	PF00009	Elongation factor Tu GTP binding domain
YPTB0025	PF00679	Elongation factor G C-terminus
YPTB0025	PF03144	Elongation factor Tu domain 2
YPTB0026	PF13419	Haloacid dehalogenase-like hydrolase
YPTB0027	PF03631	YPTB0027
YPTB0028	PF02580	D-Tyr-tRNA(Tyr) deacylase
YPTB0029	PF00583	Acetyltransferase (GNAT) family
YPTB0029	PF09500	Putative thioesterase (yiiD_Cterm)
YPTB0031	PF00860	Permease family
YPTB0032	PF03616	YPTB0032
YPTB0033	PF00270	DEAD/DEAH box helicase
YPTB0033	PF00271	Helicase conserved C-terminal domain
YPTB0033	PF17191	YPTB0033
YPTB0034	PF00588	SpoU rRNA Methylase family
YPTB0034	PF12105	SpoU, rRNA methylase, C-terminal
YPTB0035	PF02824	TGS domain
YPTB0035	PF04607	Region found in RelA / SpoT proteins
YPTB0035	PF13291	ACT domain
YPTB0035	PF13328	HD domain
YPTB0036	PF01192	RNA polymerase Rpb6
YPTB0037	PF00625	Guanylate kinase
YPTB0038	PF01653	NAD-dependent DNA ligase adenylation domain
YPTB0038	PF03120	NAD-dependent DNA ligase OB-fold domain
YPTB0039	PF03458	YPTB0039
YPTB0040	PF03755	YPTB0040
YPTB0040	PF08340	YPTB0040
YPTB0041	PF01138	3' exoribonuclease family, domain 1
YPTB0041	PF03725	3' exoribonuclease family, domain 2
YPTB0042	PF00156	Phosphoribosyl transferase domain
YPTB0043	PF00440	Bacterial regulatory proteins, tetR family
YPTB0044	PF00692	dUTPase
YPTB0045	PF02441	Flavoprotein
YPTB0045	PF04127	DNA / pantothenate metabolism flavoprotein
YPTB0046	PF04002	RadC-like JAB domain
YPTB0047	PF00830	Ribosomal L28 family
YPTB0048	PF00471	Ribosomal protein L33
YPTB0049	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
YPTB0049	PF06827	Zinc finger found in FPG and IleRS
YPTB0049	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
YPTB0050	PF01467	Cytidylyltransferase
YPTB0051	PF00535	Glycosyl transferase family 2
YPTB0052	PF00534	Glycosyl transferases group 1
YPTB0052	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YPTB0053	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPTB0054	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPTB0055	PF01370	NAD dependent epimerase/dehydratase family
YPTB0056	PF00155	Aminotransferase class I and II
YPTB0057	PF00107	Zinc-binding dehydrogenase
YPTB0057	PF08240	Alcohol dehydrogenase GroES-like domain
YPTB0058	PF04748	Divergent polysaccharide deacetylase
YPTB0059	PF01551	Peptidase family M23
YPTB0060	PF01676	Metalloenzyme superfamily
YPTB0060	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
YPTB0061	PF00581	Rhodanese-like domain
YPTB0062	PF00462	Glutaredoxin
YPTB0063	PF02556	Preprotein translocase subunit SecB
YPTB0064	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YPTB0064	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
YPTB0066	PF00132	Bacterial transferase hexapeptide (six repeats)
YPTB0066	PF06426	Serine acetyltransferase, N-terminal
YPTB0067	PF00588	SpoU rRNA Methylase family
YPTB0068	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPTB0068	PF02805	Metal binding domain of Ada
YPTB0068	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YPTB0068	PF12833	Helix-turn-helix domain
YPTB0069	PF00512	His Kinase A (phospho-acceptor) domain
YPTB0069	PF00672	HAMP domain
YPTB0069	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB0069	PF16527	YPTB0069
YPTB0070	PF00072	Response regulator receiver domain
YPTB0070	PF00486	Transcriptional regulatory protein, C terminal
YPTB0071	PF07813	LTXXQ motif family protein
YPTB0072	PF04754	YPTB0072
YPTB0073	PF01545	Cation efflux family
YPTB0073	PF16916	YPTB0073
YPTB0074	PF00365	Phosphofructokinase
YPTB0075	PF13531	Bacterial extracellular solute-binding protein
YPTB0076	PF13531	Bacterial extracellular solute-binding protein
YPTB0077	PF00939	Sodium:sulfate symporter transmembrane region
YPTB0078	PF03737	Demethylmenaquinone methyltransferase
YPTB0079	PF02585	GlcNAc-PI de-N-acetylase
YPTB0080	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0080	PF03466	LysR substrate binding domain
YPTB0081	PF00121	Triosephosphate isomerase
YPTB0082	PF07305	YPTB0082
YPTB0083	PF05656	YPTB0083
YPTB0084	PF00175	Oxidoreductase NAD-binding domain
YPTB0084	PF00970	Oxidoreductase FAD-binding domain
YPTB0085	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
YPTB0086	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB0086	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB0087	PF00230	Major intrinsic protein
YPTB0089	PF06005	Protein of unknown function (DUF904)
YPTB0090	PF00005	ABC transporter
YPTB0090	PF00664	ABC transporter transmembrane region
YPTB0090	PF03412	Peptidase C39 family
YPTB0091	PF13437	HlyD family secretion protein
YPTB0094	PF14016	YPTB0094
YPTB0095	PF03737	Demethylmenaquinone methyltransferase
YPTB0096	PF01040	UbiA prenyltransferase family
YPTB0097	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB0097	PF07724	AAA domain (Cdc48 subfamily)
YPTB0097	PF10431	C-terminal, D2-small domain, of ClpB protein
YPTB0098	PF00227	Proteasome subunit
YPTB0099	PF05036	Sporulation related domain
YPTB0100	PF00356	Bacterial regulatory proteins, lacI family
YPTB0100	PF13377	Periplasmic binding protein-like domain
YPTB0101	PF00270	DEAD/DEAH box helicase
YPTB0101	PF00271	Helicase conserved C-terminal domain
YPTB0102	PF01197	Ribosomal protein L31
YPTB0103	PF05360	YPTB0103
YPTB0104	PF01340	Met Apo-repressor, MetJ
YPTB0105	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPTB0106	PF00696	Amino acid kinase family
YPTB0106	PF00742	Homoserine dehydrogenase
YPTB0106	PF03447	Homoserine dehydrogenase, NAD binding domain
YPTB0107	PF02219	Methylenetetrahydrofolate reductase
YPTB0108	PF00311	Phosphoenolpyruvate carboxylase
YPTB0109	PF01546	Peptidase family M20/M25/M40
YPTB0109	PF07687	Peptidase dimerisation domain
YPTB0110	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPTB0110	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPTB0111	PF00696	Amino acid kinase family
YPTB0112	PF00206	Lyase
YPTB0112	PF14698	Argininosuccinate lyase C-terminal
YPTB0113	PF00593	TonB dependent receptor
YPTB0113	PF07715	TonB-dependent Receptor Plug Domain
YPTB0114	PF06438	Heme-binding protein A (HasA)
YPTB0115	PF00005	ABC transporter
YPTB0115	PF00664	ABC transporter transmembrane region
YPTB0116	PF13437	HlyD family secretion protein
YPTB0116	PF13533	Biotin-lipoyl like
YPTB0117	PF03544	Gram-negative bacterial TonB protein C-terminal
YPTB0118	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPTB0118	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB0119	PF00462	Glutaredoxin
YPTB0119	PF08534	Redoxin
YPTB0120	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0120	PF03466	LysR substrate binding domain
YPTB0121	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPTB0121	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB0122	PF00440	Bacterial regulatory proteins, tetR family
YPTB0123	PF07226	YPTB0123
YPTB0124	PF05958	tRNA (Uracil-5-)-methyltransferase
YPTB0125	PF00593	TonB dependent receptor
YPTB0125	PF07715	TonB-dependent Receptor Plug Domain
YPTB0126	PF01177	Asp/Glu/Hydantoin racemase
YPTB0127	PF13407	Periplasmic binding protein domain
YPTB0128	PF00005	ABC transporter
YPTB0129	PF02653	YPTB0129
YPTB0130	PF02653	YPTB0130
YPTB0131	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0131	PF03466	LysR substrate binding domain
YPTB0132	PF04219	YPTB0132
YPTB0133	PF01078	Magnesium chelatase, subunit ChlI
YPTB0133	PF13335	YPTB0133
YPTB0133	PF13541	Subunit ChlI of Mg-chelatase
YPTB0134	PF00205	Thiamine pyrophosphate enzyme, central domain
YPTB0134	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPTB0134	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPTB0135	PF13710	ACT domain
YPTB0136	PF01063	Aminotransferase class IV
YPTB0137	PF00920	Dehydratase family
YPTB0138	PF00291	Pyridoxal-phosphate dependent enzyme
YPTB0138	PF00585	C-terminal regulatory domain of Threonine dehydratase
YPTB0139	PF06092	YPTB0139
YPTB0140	PF06092	YPTB0140
YPTB0141	PF06092	YPTB0141
YPTB0142	PF11692	YPTB0142
YPTB0144	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0144	PF03466	LysR substrate binding domain
YPTB0145	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
YPTB0145	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
YPTB0149	PF01320	Colicin immunity protein / pyocin immunity protein
YPTB0151	PF01320	Colicin immunity protein / pyocin immunity protein
YPTB0153	PF01320	Colicin immunity protein / pyocin immunity protein
YPTB0154	PF06530	YPTB0154
YPTB0155	PF10828	YPTB0155
YPTB0156	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB0156	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB0157	PF00419	Fimbrial protein
YPTB0158	PF00577	Outer membrane usher protein
YPTB0158	PF13953	PapC C-terminal domain
YPTB0158	PF13954	PapC N-terminal domain
YPTB0159	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB0159	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB0160	PF16970	YPTB0160
YPTB0161	PF05096	Glutamine cyclotransferase
YPTB0162	PF13616	PPIC-type PPIASE domain
YPTB0163	PF00580	UvrD/REP helicase N-terminal domain
YPTB0163	PF13361	UvrD-like helicase C-terminal domain
YPTB0164	PF02541	Ppx/GppA phosphatase family
YPTB0165	PF00270	DEAD/DEAH box helicase
YPTB0165	PF00271	Helicase conserved C-terminal domain
YPTB0166	PF00085	Thioredoxin
YPTB0167	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPTB0167	PF07497	Rho termination factor, RNA-binding domain
YPTB0167	PF07498	Rho termination factor, N-terminal domain
YPTB0168	PF00953	Glycosyl transferase family 4
YPTB0169	PF02706	Chain length determinant protein
YPTB0170	PF02350	UDP-N-acetylglucosamine 2-epimerase
YPTB0171	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YPTB0171	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YPTB0171	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YPTB0172	PF16363	YPTB0172
YPTB0173	PF00483	Nucleotidyl transferase
YPTB0174	PF00583	Acetyltransferase (GNAT) family
YPTB0175	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPTB0176	PF01943	YPTB0176
YPTB0177	PF07429	YPTB0177
YPTB0178	PF06899	YPTB0178
YPTB0179	PF03808	YPTB0179
YPTB0180	PF00324	Amino acid permease
YPTB0181	PF07219	YPTB0181
YPTB0182	PF04375	YPTB0182
YPTB0183	PF02602	Uroporphyrinogen-III synthase HemD
YPTB0184	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
YPTB0184	PF03900	Porphobilinogen deaminase, C-terminal domain
YPTB0185	PF01295	YPTB0185
YPTB0185	PF12633	YPTB0185
YPTB0186	PF00872	YPTB0186
YPTB0188	PF01491	Frataxin-like domain
YPTB0189	PF13627	YPTB0189
YPTB0190	PF01678	Diaminopimelate epimerase
YPTB0191	PF04340	Protein of unknown function, DUF484
YPTB0192	PF00589	Phage integrase family
YPTB0192	PF02899	Phage integrase, N-terminal SAM-like domain
YPTB0193	PF13419	Haloacid dehalogenase-like hydrolase
YPTB0194	PF00580	UvrD/REP helicase N-terminal domain
YPTB0194	PF13361	UvrD-like helicase C-terminal domain
YPTB0195	PF00440	Bacterial regulatory proteins, tetR family
YPTB0196	PF06792	Uncharacterised protein family (UPF0261)
YPTB0197	PF09370	TIM-barrel signal transduction protein
YPTB0198	PF01544	CorA-like Mg2+ transporter protein
YPTB0199	PF00892	EamA-like transporter family
YPTB0200	PF03061	Thioesterase superfamily
YPTB0201	PF02253	Phospholipase A1
YPTB0202	PF00270	DEAD/DEAH box helicase
YPTB0202	PF00271	Helicase conserved C-terminal domain
YPTB0202	PF00570	HRDC domain
YPTB0202	PF09382	RQC domain
YPTB0202	PF16124	YPTB0202
YPTB0203	PF01810	YPTB0203
YPTB0204	PF01810	YPTB0204
YPTB0205	PF12146	Putative lysophospholipase
YPTB0206	PF08282	haloacid dehalogenase-like hydrolase
YPTB0207	PF03272	YPTB0207
YPTB0208	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPTB0209	PF01266	FAD dependent oxidoreductase
YPTB0209	PF04324	BFD-like [2Fe-2S] binding domain
YPTB0210	PF00890	FAD binding domain
YPTB0211	PF02754	YPTB0211
YPTB0211	PF13183	4Fe-4S dicluster domain
YPTB0212	PF08786	Domain of unknown function (DUF1795)
YPTB0213	PF02592	YPTB0213
YPTB0214	PF01206	Sulfurtransferase TusA
YPTB0215	PF00122	E1-E2 ATPase
YPTB0215	PF00403	Heavy-metal-associated domain
YPTB0215	PF00702	haloacid dehalogenase-like hydrolase
YPTB0216	PF07947	YPTB0216
YPTB0217	PF08850	YPTB0217
YPTB0218	PF10694	Protein of unknown function (DUF2500)
YPTB0219	PF06611	YPTB0219
YPTB0220	PF03602	Conserved hypothetical protein 95
YPTB0221	PF00448	SRP54-type protein, GTPase domain
YPTB0221	PF02881	SRP54-type protein, helical bundle domain
YPTB0222	PF00005	ABC transporter
YPTB0223	PF02687	YPTB0223
YPTB0224	PF00140	Sigma-70 factor, region 1
YPTB0224	PF04542	Sigma-70 region 2
YPTB0224	PF04545	Sigma-70, region 4
YPTB0225	PF12568	Acetyltransferase (GNAT) domain
YPTB0226	PF13458	Periplasmic binding protein
YPTB0227	PF02653	YPTB0227
YPTB0228	PF02653	YPTB0228
YPTB0228	PF11862	YPTB0228
YPTB0229	PF00005	ABC transporter
YPTB0229	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPTB0230	PF00005	ABC transporter
YPTB0235	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB0236	PF16967	YPTB0236
YPTB0237	PF04449	CS1 type fimbrial major subunit
YPTB0238	PF13416	Bacterial extracellular solute-binding protein
YPTB0239	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0240	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0241	PF00005	ABC transporter
YPTB0241	PF08402	TOBE domain
YPTB0242	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPTB0243	PF03547	YPTB0243
YPTB0245	PF06114	Domain of unknown function (DUF955)
YPTB0245	PF13560	Helix-turn-helix domain
YPTB0246	PF00892	EamA-like transporter family
YPTB0247	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0247	PF03466	LysR substrate binding domain
YPTB0248	PF01717	Cobalamin-independent synthase, Catalytic domain
YPTB0248	PF08267	Cobalamin-independent synthase, N-terminal domain
YPTB0249	PF01738	Dienelactone hydrolase family
YPTB0250	PF01048	Phosphorylase superfamily
YPTB0251	PF13350	Tyrosine phosphatase family
YPTB0252	PF02554	YPTB0252
YPTB0252	PF13722	YPTB0252
YPTB0253	PF09335	YPTB0253
YPTB0254	PF02646	YPTB0254
YPTB0255	PF01209	ubiE/COQ5 methyltransferase family
YPTB0256	PF02036	SCP-2 sterol transfer family
YPTB0257	PF03109	YPTB0257
YPTB0258	PF02416	mttA/Hcf106 family
YPTB0260	PF00902	Sec-independent protein translocase protein (TatC)
YPTB0261	PF01026	TatD related DNase
YPTB0262	PF00490	Delta-aminolevulinic acid dehydratase
YPTB0263	PF02357	Transcription termination factor nusG
YPTB0264	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YPTB0265	PF00175	Oxidoreductase NAD-binding domain
YPTB0265	PF00970	Oxidoreductase FAD-binding domain
YPTB0266	PF00108	Thiolase, N-terminal domain
YPTB0266	PF02803	Thiolase, C-terminal domain
YPTB0267	PF00378	Enoyl-CoA hydratase/isomerase family
YPTB0267	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YPTB0267	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YPTB0268	PF00557	Metallopeptidase family M24
YPTB0269	PF01205	Uncharacterized protein family UPF0029
YPTB0269	PF09186	Domain of unknown function (DUF1949)
YPTB0270	PF02386	Cation transport protein
YPTB0271	PF12724	Flavodoxin domain
YPTB0272	PF01565	FAD binding domain
YPTB0272	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
YPTB0273	PF02237	Biotin protein ligase C terminal domain
YPTB0273	PF03099	Biotin/lipoate A/B protein ligase family
YPTB0273	PF08279	HTH domain
YPTB0274	PF00485	Phosphoribulokinase / Uridine kinase family
YPTB0275	PF13673	Acetyltransferase (GNAT) domain
YPTB0276	PF00009	Elongation factor Tu GTP binding domain
YPTB0276	PF03143	Elongation factor Tu C-terminal domain
YPTB0276	PF03144	Elongation factor Tu domain 2
YPTB0277	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
YPTB0278	PF00467	KOW motif
YPTB0278	PF02357	Transcription termination factor nusG
YPTB0279	PF00298	Ribosomal protein L11, RNA binding domain
YPTB0279	PF03946	Ribosomal protein L11, N-terminal domain
YPTB0280	PF00687	Ribosomal protein L1p/L10e family
YPTB0281	PF00466	Ribosomal protein L10
YPTB0282	PF00542	Ribosomal protein L7/L12 C-terminal domain
YPTB0282	PF16320	YPTB0282
YPTB0283	PF00562	RNA polymerase Rpb2, domain 6
YPTB0283	PF04560	RNA polymerase Rpb2, domain 7
YPTB0283	PF04561	RNA polymerase Rpb2, domain 2
YPTB0283	PF04563	RNA polymerase beta subunit
YPTB0283	PF04565	RNA polymerase Rpb2, domain 3
YPTB0283	PF10385	RNA polymerase beta subunit external 1 domain
YPTB0284	PF00623	RNA polymerase Rpb1, domain 2
YPTB0284	PF04983	RNA polymerase Rpb1, domain 3
YPTB0284	PF04997	RNA polymerase Rpb1, domain 1
YPTB0284	PF04998	RNA polymerase Rpb1, domain 5
YPTB0284	PF05000	RNA polymerase Rpb1, domain 4
YPTB0285	PF04055	Radical SAM superfamily
YPTB0285	PF06968	Biotin and Thiamin Synthesis associated domain
YPTB0286	PF05690	Thiazole biosynthesis protein ThiG
YPTB0287	PF02597	ThiS family
YPTB0288	PF00899	ThiF family
YPTB0289	PF02581	Thiamine monophosphate synthase/TENI
YPTB0290	PF01964	ThiC family
YPTB0290	PF13667	ThiC-associated domain
YPTB0291	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
YPTB0292	PF00293	NUDIX domain
YPTB0292	PF09297	NADH pyrophosphatase zinc ribbon domain
YPTB0294	PF01208	Uroporphyrinogen decarboxylase (URO-D)
YPTB0295	PF04493	Endonuclease V
YPTB0296	PF04222	Protein of unknown function (DUF416)
YPTB0297	PF00216	Bacterial DNA-binding protein
YPTB0298	PF07356	YPTB0298
YPTB0298	PF08139	YPTB0298
YPTB0299	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
YPTB0299	PF02843	Phosphoribosylglycinamide synthetase, C domain
YPTB0299	PF02844	Phosphoribosylglycinamide synthetase, N domain
YPTB0300	PF01808	AICARFT/IMPCHase bienzyme
YPTB0300	PF02142	MGS-like domain
YPTB0301	PF01527	Transposase
YPTB0302	PF13276	YPTB0302
YPTB0302	PF13683	YPTB0302
YPTB0303	PF01695	IstB-like ATP binding protein
YPTB0304	PF00665	Integrase core domain
YPTB0304	PF02796	Helix-turn-helix domain of resolvase
YPTB0305	PF12715	Abhydrolase family
YPTB0306	PF00474	Sodium:solute symporter family
YPTB0307	PF04341	YPTB0307
YPTB0308	PF00501	AMP-binding enzyme
YPTB0308	PF13193	AMP-binding enzyme C-terminal domain
YPTB0308	PF16177	YPTB0308
YPTB0309	PF00375	Sodium:dicarboxylate symporter family
YPTB0310	PF00072	Response regulator receiver domain
YPTB0310	PF00196	Bacterial regulatory proteins, luxR family
YPTB0311	PF00072	Response regulator receiver domain
YPTB0311	PF00512	His Kinase A (phospho-acceptor) domain
YPTB0311	PF01627	Hpt domain
YPTB0311	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB0312	PF00263	YPTB0312
YPTB0312	PF03958	Bacterial type II/III secretion system short domain
YPTB0313	PF16693	YPTB0313
YPTB0314	PF08988	Protein of unknown function (DUF1895)
YPTB0315	PF12833	Helix-turn-helix domain
YPTB0316	PF09392	Type III secretion needle MxiH like
YPTB0317	PF06287	YPTB0317
YPTB0319	PF01514	Secretory protein of YscJ/FliF family
YPTB0320	PF13327	YPTB0320
YPTB0321	PF06188	YPTB0321
YPTB0322	PF00771	FHIPEP family
YPTB0323	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPTB0323	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPTB0326	PF01052	Surface presentation of antigens (SPOA)
YPTB0327	PF00813	YPTB0327
YPTB0328	PF01313	YPTB0328
YPTB0329	PF01311	YPTB0329
YPTB0330	PF01312	FlhB HrpN YscU SpaS Family
YPTB0331	PF04143	YPTB0331
YPTB0332	PF01206	Sulfurtransferase TusA
YPTB0333	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0333	PF03466	LysR substrate binding domain
YPTB0335	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPTB0336	PF00005	ABC transporter
YPTB0337	PF01032	FecCD transport family
YPTB0338	PF01497	Periplasmic binding protein
YPTB0339	PF05171	Haemin-degrading HemS
YPTB0340	PF00593	TonB dependent receptor
YPTB0340	PF07715	TonB-dependent Receptor Plug Domain
YPTB0341	PF10636	Hemin uptake protein hemP
YPTB0342	PF13460	NADH(P)-binding
YPTB0343	PF06228	Haem utilisation ChuX/HutX
YPTB0344	PF04055	Radical SAM superfamily
YPTB0345	PF02219	Methylenetetrahydrofolate reductase
YPTB0347	PF15617	YPTB0347
YPTB0348	PF11202	YPTB0348
YPTB0348	PF15608	YPTB0348
YPTB0350	PF12500	YPTB0350
YPTB0350	PF15609	YPTB0350
YPTB0351	PF15632	YPTB0351
YPTB0352	PF02342	TerD domain
YPTB0353	PF02342	TerD domain
YPTB0354	PF05099	Tellurite resistance protein TerB
YPTB0355	PF03741	YPTB0355
YPTB0356	PF02342	TerD domain
YPTB0357	PF02342	TerD domain
YPTB0358	PF06551	YPTB0358
YPTB0359	PF00577	Outer membrane usher protein
YPTB0359	PF13953	PapC C-terminal domain
YPTB0359	PF13954	PapC N-terminal domain
YPTB0360	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB0364	PF01565	FAD binding domain
YPTB0364	PF08031	Berberine and berberine like
YPTB0365	PF03797	Autotransporter beta-domain
YPTB0366	PF04345	Chorismate lyase
YPTB0367	PF01040	UbiA prenyltransferase family
YPTB0368	PF01553	Acyltransferase
YPTB0369	PF01219	Prokaryotic diacylglycerol kinase
YPTB0370	PF00717	Peptidase S24-like
YPTB0370	PF01726	LexA DNA binding domain
YPTB0371	PF01475	Ferric uptake regulator family
YPTB0372	PF01207	Dihydrouridine synthase (Dus)
YPTB0373	PF09583	YPTB0373
YPTB0374	PF00107	Zinc-binding dehydrogenase
YPTB0374	PF08240	Alcohol dehydrogenase GroES-like domain
YPTB0375	PF00772	DnaB-like helicase N terminal domain
YPTB0375	PF03796	DnaB-like helicase C terminal domain
YPTB0376	PF00842	Alanine racemase, C-terminal domain
YPTB0376	PF01168	Alanine racemase, N-terminal domain
YPTB0377	PF00155	Aminotransferase class I and II
YPTB0378	PF04237	YjbR
YPTB0379	PF00005	ABC transporter
YPTB0380	PF00436	Single-strand binding protein family
YPTB0381	PF05336	Domain of unknown function (DUF718)
YPTB0382	PF00465	Iron-containing alcohol dehydrogenase
YPTB0383	PF00596	Class II Aldolase and Adducin N-terminal domain
YPTB0384	PF06134	L-rhamnose isomerase (RhaA)
YPTB0385	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB0385	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB0386	PF02311	AraC-like ligand binding domain
YPTB0386	PF12833	Helix-turn-helix domain
YPTB0387	PF02311	AraC-like ligand binding domain
YPTB0387	PF12833	Helix-turn-helix domain
YPTB0388	PF06379	YPTB0388
YPTB0393	PF03272	YPTB0393
YPTB0393	PF13402	Peptidase M60-like family
YPTB0395	PF00440	Bacterial regulatory proteins, tetR family
YPTB0396	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB0396	PF13247	4Fe-4S dicluster domain
YPTB0396	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YPTB0397	PF12800	4Fe-4S binding domain
YPTB0397	PF13187	4Fe-4S dicluster domain
YPTB0398	PF00384	Molybdopterin oxidoreductase
YPTB0398	PF01568	Molydopterin dinucleotide binding domain
YPTB0398	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPTB0399	PF02683	YPTB0399
YPTB0399	PF11412	Disulphide bond corrector protein DsbC
YPTB0399	PF13899	Thioredoxin-like
YPTB0400	PF03091	CutA1 divalent ion tolerance protein
YPTB0401	PF03605	YPTB0401
YPTB0402	PF00206	Lyase
YPTB0402	PF10415	Fumarase C C-terminus
YPTB0403	PF04186	YPTB0403
YPTB0404	PF00166	Chaperonin 10 Kd subunit
YPTB0405	PF00118	TCP-1/cpn60 chaperonin family
YPTB0406	PF13698	YPTB0406
YPTB0407	PF04055	Radical SAM superfamily
YPTB0407	PF13353	4Fe-4S single cluster domain
YPTB0408	PF01132	Elongation factor P (EF-P) OB domain
YPTB0408	PF08207	Elongation factor P (EF-P) KOW-like domain
YPTB0408	PF09285	Elongation factor P, C-terminal
YPTB0409	PF00893	Small Multidrug Resistance protein
YPTB0410	PF02313	Fumarate reductase subunit D
YPTB0411	PF02300	Fumarate reductase subunit C
YPTB0412	PF13085	2Fe-2S iron-sulfur cluster binding domain
YPTB0412	PF13183	4Fe-4S dicluster domain
YPTB0413	PF00890	FAD binding domain
YPTB0413	PF02910	Fumarate reductase flavoprotein C-term
YPTB0414	PF00152	tRNA synthetases class II (D, K and N)
YPTB0415	PF00924	Mechanosensitive ion channel
YPTB0415	PF12794	YPTB0415
YPTB0415	PF12795	YPTB0415
YPTB0416	PF02666	YPTB0416
YPTB0417	PF03193	Protein of unknown function, DUF258
YPTB0418	PF00929	Exonuclease
YPTB0419	PF08331	YPTB0419
YPTB0419	PF13484	YPTB0419
YPTB0420	PF01256	Carbohydrate kinase
YPTB0420	PF03853	YjeF-related protein N-terminus
YPTB0421	PF02367	Uncharacterised P-loop hydrolase UPF0079
YPTB0422	PF01476	LysM domain
YPTB0422	PF01520	N-acetylmuramoyl-L-alanine amidase
YPTB0422	PF11741	AMIN domain
YPTB0423	PF01119	DNA mismatch repair protein, C-terminal domain
YPTB0423	PF08676	MutL C terminal dimerisation domain
YPTB0423	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB0424	PF01715	IPP transferase
YPTB0425	PF17209	YPTB0425
YPTB0426	PF01926	50S ribosome-binding GTPase
YPTB0426	PF13167	YPTB0426
YPTB0426	PF16360	YPTB0426
YPTB0427	PF01145	SPFH domain / Band 7 family
YPTB0427	PF12221	YPTB0427
YPTB0428	PF01145	SPFH domain / Band 7 family
YPTB0429	PF09838	YPTB0429
YPTB0430	PF00709	Adenylosuccinate synthetase
YPTB0431	PF02082	Transcriptional regulator
YPTB0432	PF00575	S1 RNA binding domain
YPTB0432	PF00773	RNB domain
YPTB0432	PF08206	Ribonuclease B OB domain
YPTB0432	PF08461	Ribonuclease R winged-helix domain
YPTB0433	PF00588	SpoU rRNA Methylase family
YPTB0433	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YPTB0434	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPTB0434	PF02770	Acyl-CoA dehydrogenase, middle domain
YPTB0435	PF07338	Protein of unknown function (DUF1471)
YPTB0436	PF00326	Prolyl oligopeptidase family
YPTB0438	PF01250	Ribosomal protein S6
YPTB0439	PF00436	Single-strand binding protein family
YPTB0440	PF01084	Ribosomal protein S18
YPTB0441	PF01281	Ribosomal protein L9, N-terminal domain
YPTB0441	PF03948	Ribosomal protein L9, C-terminal domain
YPTB0442	PF12582	YPTB0442
YPTB0443	PF04225	Opacity-associated protein A LysM-like domain
YPTB0443	PF08525	YPTB0443
YPTB0444	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPTB0444	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YPTB0445	PF01814	Hemerythrin HHE cation binding domain
YPTB0445	PF04405	YPTB0445
YPTB0446	PF00149	Calcineurin-like phosphoesterase
YPTB0446	PF02872	5'-nucleotidase, C-terminal domain
YPTB0447	PF00459	Inositol monophosphatase family
YPTB0448	PF09695	YPTB0448
YPTB0449	PF06526	Protein of unknown function (DUF1107)
YPTB0450	PF00571	CBS domain
YPTB0450	PF01595	YPTB0450
YPTB0450	PF03471	Transporter associated domain
YPTB0451	PF01625	Peptide methionine sulfoxide reductase
YPTB0452	PF01103	Surface antigen
YPTB0452	PF07244	Surface antigen variable number repeat
YPTB0452	PF17243	YPTB0452
YPTB0453	PF04357	YPTB0453
YPTB0454	PF06094	AIG2-like family
YPTB0455	PF00719	Inorganic pyrophosphatase
YPTB0456	PF00316	Fructose-1-6-bisphosphatase
YPTB0457	PF01225	Mur ligase family, catalytic domain
YPTB0457	PF02875	Mur ligase family, glutamate ligase domain
YPTB0457	PF08245	Mur ligase middle domain
YPTB0458	PF07338	Protein of unknown function (DUF1471)
YPTB0459	PF01316	Arginine repressor, DNA binding domain
YPTB0459	PF02863	Arginine repressor, C-terminal domain
YPTB0460	PF00056	lactate/malate dehydrogenase, NAD binding domain
YPTB0460	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
YPTB0461	PF13693	Winged helix-turn-helix DNA-binding
YPTB0462	PF02316	Mu DNA-binding domain
YPTB0463	PF00348	Polyprenyl synthetase
YPTB0464	PF00829	Ribosomal prokaryotic L21 protein
YPTB0465	PF01016	Ribosomal L27 protein
YPTB0466	PF00892	EamA-like transporter family
YPTB0467	PF01018	GTP1/OBG
YPTB0467	PF01926	50S ribosome-binding GTPase
YPTB0468	PF00512	His Kinase A (phospho-acceptor) domain
YPTB0468	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB0469	PF00072	Response regulator receiver domain
YPTB0469	PF00486	Transcriptional regulatory protein, C terminal
YPTB0470	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
YPTB0471	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPTB0471	PF03449	Transcription elongation factor, N-terminal
YPTB0472	PF01985	CRS1 / YhbY (CRM) domain
YPTB0473	PF01728	FtsJ-like methyltransferase
YPTB0474	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB0474	PF01434	Peptidase family M41
YPTB0474	PF06480	FtsH Extracellular
YPTB0475	PF00809	Pterin binding enzyme
YPTB0476	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPTB0476	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPTB0476	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPTB0476	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPTB0477	PF03840	Preprotein translocase SecG subunit
YPTB0478	PF02576	Uncharacterised BCR, YhbC family COG0779
YPTB0478	PF17384	YPTB0478
YPTB0479	PF08529	NusA N-terminal domain
YPTB0479	PF13184	NusA-like KH domain
YPTB0479	PF14520	Helix-hairpin-helix domain
YPTB0480	PF00009	Elongation factor Tu GTP binding domain
YPTB0480	PF03144	Elongation factor Tu domain 2
YPTB0480	PF04760	Translation initiation factor IF-2, N-terminal region
YPTB0480	PF08364	YPTB0480
YPTB0480	PF11987	Translation-initiation factor 2
YPTB0481	PF02033	Ribosome-binding factor A
YPTB0482	PF01509	TruB family pseudouridylate synthase (N terminal domain)
YPTB0482	PF09157	Pseudouridine synthase II TruB, C-terminal
YPTB0482	PF16198	YPTB0482
YPTB0483	PF00312	Ribosomal protein S15
YPTB0484	PF00013	KH domain
YPTB0484	PF00575	S1 RNA binding domain
YPTB0484	PF01138	3' exoribonuclease family, domain 1
YPTB0484	PF03725	3' exoribonuclease family, domain 2
YPTB0484	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
YPTB0485	PF07719	Tetratricopeptide repeat
YPTB0485	PF13181	Tetratricopeptide repeat
YPTB0486	PF00270	DEAD/DEAH box helicase
YPTB0486	PF00271	Helicase conserved C-terminal domain
YPTB0486	PF03880	DbpA RNA binding domain
YPTB0486	PF12343	YPTB0486
YPTB0488	PF05973	YPTB0488
YPTB0489	PF01381	Helix-turn-helix
YPTB0490	PF00296	Luciferase-like monooxygenase
YPTB0491	PF16576	YPTB0491
YPTB0492	PF00873	AcrB/AcrD/AcrF family
YPTB0493	PF02321	Outer membrane efflux protein
YPTB0494	PF01136	YPTB0494
YPTB0495	PF01136	YPTB0495
YPTB0496	PF02036	SCP-2 sterol transfer family
YPTB0497	PF00583	Acetyltransferase (GNAT) family
YPTB0498	PF01541	GIY-YIG catalytic domain
YPTB0499	PF05426	Alginate lyase
YPTB0499	PF07940	Heparinase II/III-like protein
YPTB0500	PF05426	Alginate lyase
YPTB0501	PF01547	Bacterial extracellular solute-binding protein
YPTB0502	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0503	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0504	PF00005	ABC transporter
YPTB0504	PF08402	TOBE domain
YPTB0505	PF05426	Alginate lyase
YPTB0508	PF12706	Beta-lactamase superfamily domain
YPTB0509	PF13238	AAA domain
YPTB0510	PF07969	Amidohydrolase family
YPTB0511	PF00005	ABC transporter
YPTB0512	PF00005	ABC transporter
YPTB0513	PF06007	YPTB0513
YPTB0514	PF05861	YPTB0514
YPTB0515	PF05845	Bacterial phosphonate metabolism protein (PhnH)
YPTB0516	PF06754	YPTB0516
YPTB0517	PF00392	Bacterial regulatory proteins, gntR family
YPTB0517	PF07702	UTRA domain
YPTB0518	PF13353	4Fe-4S single cluster domain
YPTB0519	PF03477	ATP cone domain
YPTB0519	PF13597	Anaerobic ribonucleoside-triphosphate reductase
YPTB0520	PF00005	ABC transporter
YPTB0521	PF00005	ABC transporter
YPTB0522	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0522	PF12911	YPTB0522
YPTB0523	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0524	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB0525	PF04074	Domain of unknown function (DUF386)
YPTB0526	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YPTB0526	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPTB0527	PF06877	Regulator of ribonuclease activity B
YPTB0528	PF00583	Acetyltransferase (GNAT) family
YPTB0529	PF00133	tRNA synthetases class I (I, L, M and V)
YPTB0529	PF08264	Anticodon-binding domain of tRNA
YPTB0529	PF10458	Valyl tRNA synthetase tRNA binding arm
YPTB0530	PF04364	DNA polymerase III chi subunit, HolC
YPTB0531	PF00883	Cytosol aminopeptidase family, catalytic domain
YPTB0531	PF02789	Cytosol aminopeptidase family, N-terminal domain
YPTB0532	PF03739	YPTB0532
YPTB0533	PF03739	YPTB0533
YPTB0535	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
YPTB0535	PF04851	Type III restriction enzyme, res subunit
YPTB0535	PF12008	Type I restriction and modification enzyme - subunit R C terminal
YPTB0536	PF01420	Type I restriction modification DNA specificity domain
YPTB0537	PF02384	N-6 DNA Methylase
YPTB0537	PF12161	HsdM N-terminal domain
YPTB0538	PF01435	Peptidase family M48
YPTB0539	PF05987	YPTB0539
YPTB0541	PF12833	Helix-turn-helix domain
YPTB0542	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPTB0543	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPTB0544	PF02378	Phosphotransferase system, EIIC
YPTB0545	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPTB0545	PF00381	PTS HPr component phosphorylation site
YPTB0545	PF00391	PEP-utilising enzyme, mobile domain
YPTB0545	PF02896	PEP-utilising enzyme, TIM barrel domain
YPTB0545	PF05524	PEP-utilising enzyme, N-terminal
YPTB0546	PF10696	YPTB0546
YPTB0547	PF03992	Antibiotic biosynthesis monooxygenase
YPTB0548	PF01791	DeoC/LacD family aldolase
YPTB0549	PF13407	Periplasmic binding protein domain
YPTB0550	PF02653	YPTB0550
YPTB0551	PF02653	YPTB0551
YPTB0552	PF00005	ABC transporter
YPTB0553	PF04198	Putative sugar-binding domain
YPTB0554	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB0554	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB0555	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPTB0556	PF04932	YPTB0556
YPTB0557	PF00266	Aminotransferase class-V
YPTB0558	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPTB0558	PF02770	Acyl-CoA dehydrogenase, middle domain
YPTB0558	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
YPTB0559	PF02597	ThiS family
YPTB0561	PF00581	Rhodanese-like domain
YPTB0561	PF00899	ThiF family
YPTB0562	PF13358	DDE superfamily endonuclease
YPTB0564	PF06305	YPTB0564
YPTB0565	PF16576	YPTB0565
YPTB0566	PF00873	AcrB/AcrD/AcrF family
YPTB0569	PF01095	Pectinesterase
YPTB0570	PF00990	GGDEF domain
YPTB0571	PF07256	YPTB0571
YPTB0572	PF05175	Methyltransferase small domain
YPTB0572	PF08468	Methyltransferase small domain N-terminal
YPTB0573	PF03603	DNA polymerase III psi subunit
YPTB0574	PF00583	Acetyltransferase (GNAT) family
YPTB0575	PF00009	Elongation factor Tu GTP binding domain
YPTB0575	PF03144	Elongation factor Tu domain 2
YPTB0575	PF16658	YPTB0575
YPTB0576	PF04972	BON domain
YPTB0577	PF07043	YPTB0577
YPTB0578	PF01734	Patatin-like phospholipase
YPTB0579	PF01026	TatD related DNase
YPTB0580	PF01773	Na+ dependent nucleoside transporter N-terminus
YPTB0580	PF07662	Na+ dependent nucleoside transporter C-terminus
YPTB0580	PF07670	Nucleoside recognition
YPTB0581	PF01791	DeoC/LacD family aldolase
YPTB0582	PF00591	Glycosyl transferase family, a/b domain
YPTB0582	PF02885	Glycosyl transferase family, helical bundle domain
YPTB0582	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
YPTB0583	PF01676	Metalloenzyme superfamily
YPTB0584	PF01048	Phosphorylase superfamily
YPTB0585	PF10144	YPTB0585
YPTB0586	PF12710	haloacid dehalogenase-like hydrolase
YPTB0587	PF13481	AAA domain
YPTB0587	PF13541	Subunit ChlI of Mg-chelatase
YPTB0588	PF01381	Helix-turn-helix
YPTB0588	PF13521	AAA domain
YPTB0589	PF02661	Fic/DOC family
YPTB0589	PF13776	YPTB0589
YPTB0590	PF00005	ABC transporter
YPTB0590	PF12848	ABC transporter
YPTB0591	PF00691	OmpA family
YPTB0592	PF00990	GGDEF domain
YPTB0592	PF17152	YPTB0592
YPTB0593	PF13689	YPTB0593
YPTB0594	PF00122	E1-E2 ATPase
YPTB0594	PF00689	Cation transporting ATPase, C-terminus
YPTB0594	PF00690	Cation transporter/ATPase, N-terminus
YPTB0594	PF00702	haloacid dehalogenase-like hydrolase
YPTB0595	PF01464	Transglycosylase SLT domain
YPTB0595	PF14718	Soluble lytic murein transglycosylase L domain
YPTB0596	PF01371	Trp repressor protein
YPTB0597	PF01931	Protein of unknown function DUF84
YPTB0598	PF00300	Histidine phosphatase superfamily (branch 1)
YPTB0599	PF06445	GyrI-like small molecule binding domain
YPTB0599	PF12833	Helix-turn-helix domain
YPTB0600	PF05981	YPTB0600
YPTB0601	PF00072	Response regulator receiver domain
YPTB0601	PF00486	Transcriptional regulatory protein, C terminal
YPTB0602	PF00696	Amino acid kinase family
YPTB0602	PF00742	Homoserine dehydrogenase
YPTB0602	PF01842	ACT domain
YPTB0602	PF03447	Homoserine dehydrogenase, NAD binding domain
YPTB0602	PF13840	ACT domain
YPTB0603	PF00288	GHMP kinases N terminal domain
YPTB0603	PF08544	GHMP kinases C terminal
YPTB0604	PF00291	Pyridoxal-phosphate dependent enzyme
YPTB0604	PF14821	Threonine synthase N terminus
YPTB0605	PF03883	YPTB0605
YPTB0606	PF00923	Transaldolase
YPTB0607	PF00994	Probable molybdopterin binding domain
YPTB0608	PF07690	Major Facilitator Superfamily
YPTB0610	PF01184	YPTB0610
YPTB0611	PF00012	Hsp70 protein
YPTB0612	PF00226	DnaJ domain
YPTB0612	PF00684	DnaJ central domain
YPTB0612	PF01556	DnaJ C terminal domain
YPTB0613	PF06965	Na+/H+ antiporter 1
YPTB0614	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0614	PF03466	LysR substrate binding domain
YPTB0615	PF01649	Ribosomal protein S20
YPTB0616	PF01687	Riboflavin kinase
YPTB0616	PF06574	FAD synthetase
YPTB0617	PF00133	tRNA synthetases class I (I, L, M and V)
YPTB0617	PF06827	Zinc finger found in FPG and IleRS
YPTB0617	PF08264	Anticodon-binding domain of tRNA
YPTB0618	PF01252	YPTB0618
YPTB0619	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPTB0620	PF02401	LytB protein
YPTB0621	PF01797	Transposase IS200 like
YPTB0622	PF01113	Dihydrodipicolinate reductase, N-terminus
YPTB0622	PF05173	Dihydrodipicolinate reductase, C-terminus
YPTB0623	PF00117	Glutamine amidotransferase class-I
YPTB0623	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
YPTB0624	PF02142	MGS-like domain
YPTB0624	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YPTB0624	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
YPTB0625	PF01810	YPTB0625
YPTB0626	PF06738	YPTB0626
YPTB0627	PF12821	YPTB0627
YPTB0628	PF00186	Dihydrofolate reductase
YPTB0630	PF12582	YPTB0630
YPTB0631	PF00149	Calcineurin-like phosphoesterase
YPTB0632	PF04379	Protein of unknown function (DUF525)
YPTB0633	PF00398	Ribosomal RNA adenine dimethylase
YPTB0634	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
YPTB0635	PF00639	PPIC-type PPIASE domain
YPTB0635	PF09312	SurA N-terminal domain
YPTB0636	PF03968	OstA-like protein
YPTB0636	PF04453	Organic solvent tolerance protein
YPTB0637	PF00226	DnaJ domain
YPTB0637	PF05099	Tellurite resistance protein TerB
YPTB0638	PF00849	RNA pseudouridylate synthase
YPTB0639	PF10074	YPTB0639
YPTB0640	PF06812	YPTB0640
YPTB0641	PF05591	YPTB0641
YPTB0642	PF05943	YPTB0642
YPTB0643	PF05638	Protein of unknown function (DUF796)
YPTB0644	PF04965	Gene 25-like lysozyme
YPTB0645	PF05947	YPTB0645
YPTB0646	PF06996	YPTB0646
YPTB0647	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB0647	PF02861	Clp amino terminal domain
YPTB0647	PF07724	AAA domain (Cdc48 subfamily)
YPTB0648	PF05954	Phage late control gene D protein (GPD)
YPTB0649	PF09937	YPTB0649
YPTB0649	PF13599	Pentapeptide repeats (9 copies)
YPTB0650	PF00805	Pentapeptide repeats (8 copies)
YPTB0650	PF13599	Pentapeptide repeats (9 copies)
YPTB0651	PF12059	YPTB0651
YPTB0652	PF13665	YPTB0652
YPTB0653	PF12790	Type VI secretion lipoprotein
YPTB0654	PF05936	YPTB0654
YPTB0655	PF00691	OmpA family
YPTB0655	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPTB0656	PF06744	YPTB0656
YPTB0656	PF06761	YPTB0656
YPTB0656	PF14331	YPTB0656
YPTB0658	PF00176	SNF2 family N-terminal domain
YPTB0658	PF00271	Helicase conserved C-terminal domain
YPTB0658	PF12137	RNA polymerase recycling family C-terminal
YPTB0659	PF00136	DNA polymerase family B
YPTB0659	PF03104	DNA polymerase family B, exonuclease domain
YPTB0660	PF09335	YPTB0660
YPTB0661	PF00005	ABC transporter
YPTB0662	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0663	PF13343	Bacterial extracellular solute-binding protein
YPTB0666	PF13276	YPTB0666
YPTB0667	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB0667	PF12793	YPTB0667
YPTB0668	PF07690	Major Facilitator Superfamily
YPTB0669	PF00694	Aconitase C-terminal domain
YPTB0670	PF00330	Aconitase family (aconitate hydratase)
YPTB0671	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPTB0672	PF00682	HMGL-like
YPTB0672	PF08502	LeuA allosteric (dimerisation) domain
YPTB0673	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0673	PF03466	LysR substrate binding domain
YPTB0674	PF00501	AMP-binding enzyme
YPTB0675	PF00205	Thiamine pyrophosphate enzyme, central domain
YPTB0675	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPTB0675	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPTB0676	PF01842	ACT domain
YPTB0676	PF10369	Small subunit of acetolactate synthase
YPTB0677	PF00356	Bacterial regulatory proteins, lacI family
YPTB0677	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPTB0678	PF06610	YPTB0678
YPTB0679	PF02381	MraZ protein
YPTB0680	PF01795	MraW methylase family
YPTB0681	PF04999	YPTB0681
YPTB0682	PF00905	Penicillin binding protein transpeptidase domain
YPTB0682	PF03717	Penicillin-binding Protein dimerisation domain
YPTB0683	PF01225	Mur ligase family, catalytic domain
YPTB0683	PF02875	Mur ligase family, glutamate ligase domain
YPTB0683	PF08245	Mur ligase middle domain
YPTB0684	PF01225	Mur ligase family, catalytic domain
YPTB0684	PF02875	Mur ligase family, glutamate ligase domain
YPTB0684	PF08245	Mur ligase middle domain
YPTB0685	PF00953	Glycosyl transferase family 4
YPTB0685	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
YPTB0686	PF02875	Mur ligase family, glutamate ligase domain
YPTB0686	PF08245	Mur ligase middle domain
YPTB0687	PF01098	YPTB0687
YPTB0688	PF03033	Glycosyltransferase family 28 N-terminal domain
YPTB0688	PF04101	Glycosyltransferase family 28 C-terminal domain
YPTB0689	PF01225	Mur ligase family, catalytic domain
YPTB0689	PF02875	Mur ligase family, glutamate ligase domain
YPTB0689	PF08245	Mur ligase middle domain
YPTB0690	PF01820	D-ala D-ala ligase N-terminus
YPTB0690	PF07478	D-ala D-ala ligase C-terminus
YPTB0691	PF03799	Cell division protein FtsQ
YPTB0691	PF08478	POTRA domain, FtsQ-type
YPTB0692	PF02491	SHS2 domain inserted in FTSA
YPTB0692	PF14450	Cell division protein FtsA
YPTB0693	PF00091	Tubulin/FtsZ family, GTPase domain
YPTB0693	PF12327	FtsZ family, C-terminal domain
YPTB0694	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
YPTB0695	PF05258	YPTB0695
YPTB0696	PF06558	YPTB0696
YPTB0697	PF01043	SecA preprotein cross-linking domain
YPTB0697	PF02810	SEC-C motif
YPTB0697	PF07516	SecA Wing and Scaffold domain
YPTB0697	PF07517	SecA DEAD-like domain
YPTB0698	PF00293	NUDIX domain
YPTB0699	PF01797	Transposase IS200 like
YPTB0700	PF03884	Domain of unknown function (DUF329)
YPTB0701	PF07072	Protein of unknown function (DUF1342)
YPTB0702	PF01121	Dephospho-CoA kinase
YPTB0703	PF00478	IMP dehydrogenase / GMP reductase domain
YPTB0704	PF00872	YPTB0704
YPTB0705	PF00482	Type II secretion system (T2SS), protein F
YPTB0706	PF00437	Type II/IV secretion system protein
YPTB0707	PF07963	Prokaryotic N-terminal methylation motif
YPTB0708	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
YPTB0708	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
YPTB0709	PF01510	N-acetylmuramoyl-L-alanine amidase
YPTB0710	PF17113	YPTB0710
YPTB0711	PF00324	Amino acid permease
YPTB0712	PF00392	Bacterial regulatory proteins, gntR family
YPTB0712	PF07729	FCD domain
YPTB0713	PF00456	Transketolase, thiamine diphosphate binding domain
YPTB0714	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YPTB0714	PF00364	Biotin-requiring enzyme
YPTB0714	PF02817	e3 binding domain
YPTB0715	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPTB0715	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB0716	PF00330	Aconitase family (aconitate hydratase)
YPTB0716	PF06434	Aconitate hydratase 2 N-terminus
YPTB0716	PF11791	Aconitate B N-terminal domain
YPTB0717	PF06062	YPTB0717
YPTB0718	PF00892	EamA-like transporter family
YPTB0719	PF02675	S-adenosylmethionine decarboxylase
YPTB0720	PF01564	Spermine/spermidine synthase
YPTB0720	PF17284	YPTB0720
YPTB0721	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YPTB0722	PF00394	Multicopper oxidase
YPTB0722	PF07731	Multicopper oxidase
YPTB0722	PF07732	Multicopper oxidase
YPTB0722	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YPTB0723	PF00156	Phosphoribosyl transferase domain
YPTB0724	PF00484	Carbonic anhydrase
YPTB0725	PF00005	ABC transporter
YPTB0726	PF01061	YPTB0726
YPTB0727	PF01522	Polysaccharide deacetylase
YPTB0728	PF02261	Aspartate decarboxylase
YPTB0729	PF02569	Pantoate-beta-alanine ligase
YPTB0730	PF02548	Ketopantoate hydroxymethyltransferase
YPTB0731	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
YPTB0732	PF01743	Poly A polymerase head domain
YPTB0732	PF12626	Polymerase A arginine-rich C-terminus
YPTB0732	PF12627	Probable RNA and SrmB- binding site of polymerase A
YPTB0733	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPTB0734	PF01258	Prokaryotic dksA/traR C4-type zinc finger
YPTB0735	PF03749	Sugar fermentation stimulation protein
YPTB0736	PF02834	LigT like Phosphoesterase
YPTB0737	PF00270	DEAD/DEAH box helicase
YPTB0737	PF00271	Helicase conserved C-terminal domain
YPTB0737	PF04408	Helicase associated domain (HA2)
YPTB0737	PF08482	YPTB0737
YPTB0738	PF00905	Penicillin binding protein transpeptidase domain
YPTB0738	PF00912	Transglycosylase
YPTB0738	PF14812	YPTB0738
YPTB0738	PF14814	Bifunctional transglycosylase second domain
YPTB0739	PF00005	ABC transporter
YPTB0740	PF01497	Periplasmic binding protein
YPTB0741	PF01032	FecCD transport family
YPTB0742	PF00202	Aminotransferase class-III
YPTB0743	PF00654	Voltage gated chloride channel
YPTB0744	PF01521	Iron-sulphur cluster biosynthesis
YPTB0745	PF03458	YPTB0745
YPTB0746	PF01497	Periplasmic binding protein
YPTB0747	PF01048	Phosphorylase superfamily
YPTB0748	PF01966	HD domain
YPTB0748	PF13286	Phosphohydrolase-associated domain
YPTB0749	PF00595	PDZ domain (Also known as DHR or GLGF)
YPTB0749	PF13180	PDZ domain
YPTB0749	PF13365	Trypsin-like peptidase domain
YPTB0750	PF00072	Response regulator receiver domain
YPTB0750	PF00512	His Kinase A (phospho-acceptor) domain
YPTB0750	PF01627	Hpt domain
YPTB0750	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB0750	PF09984	YPTB0750
YPTB0751	PF02824	TGS domain
YPTB0751	PF04607	Region found in RelA / SpoT proteins
YPTB0751	PF13291	ACT domain
YPTB0751	PF13328	HD domain
YPTB0753	PF03819	MazG nucleotide pyrophosphohydrolase domain
YPTB0754	PF00117	Glutamine amidotransferase class-I
YPTB0754	PF06418	CTP synthase N-terminus
YPTB0755	PF00113	Enolase, C-terminal TIM barrel domain
YPTB0755	PF03952	Enolase, N-terminal domain
YPTB0756	PF00080	Copper/zinc superoxide dismutase (SODC)
YPTB0757	PF04055	Radical SAM superfamily
YPTB0757	PF13394	4Fe-4S single cluster domain
YPTB0758	PF01242	6-pyruvoyl tetrahydropterin synthase
YPTB0759	PF00175	Oxidoreductase NAD-binding domain
YPTB0759	PF00258	Flavodoxin
YPTB0759	PF00667	FAD binding domain
YPTB0760	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YPTB0760	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YPTB0761	PF01507	Phosphoadenosine phosphosulfate reductase family
YPTB0762	PF15919	YPTB0762
YPTB0763	PF07927	YcfA-like protein
YPTB0764	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPTB0764	PF10414	Sirohaem synthase dimerisation region
YPTB0764	PF13241	Putative NAD(P)-binding
YPTB0764	PF14824	Sirohaem biosynthesis protein central
YPTB0765	PF01507	Phosphoadenosine phosphosulfate reductase family
YPTB0766	PF00009	Elongation factor Tu GTP binding domain
YPTB0767	PF01583	Adenylylsulphate kinase
YPTB0768	PF12084	YPTB0768
YPTB0769	PF04977	Septum formation initiator
YPTB0770	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YPTB0771	PF02542	YgbB family
YPTB0772	PF01142	tRNA pseudouridine synthase D (TruD)
YPTB0773	PF01975	Survival protein SurE
YPTB0774	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
YPTB0775	PF01476	LysM domain
YPTB0775	PF01551	Peptidase family M23
YPTB0776	PF00140	Sigma-70 factor, region 1
YPTB0776	PF04539	Sigma-70 region 3
YPTB0776	PF04542	Sigma-70 region 2
YPTB0776	PF04545	Sigma-70, region 4
YPTB0777	PF00872	YPTB0777
YPTB0778	PF00488	MutS domain V
YPTB0778	PF01624	MutS domain I
YPTB0778	PF05188	MutS domain II
YPTB0778	PF05190	MutS family domain IV
YPTB0778	PF05192	MutS domain III
YPTB0779	PF02502	Ribose/Galactose Isomerase
YPTB0780	PF00107	Zinc-binding dehydrogenase
YPTB0780	PF08240	Alcohol dehydrogenase GroES-like domain
YPTB0781	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB0782	PF02733	Dak1 domain
YPTB0783	PF02734	DAK2 domain
YPTB0784	PF04198	Putative sugar-binding domain
YPTB0784	PF13518	Helix-turn-helix domain
YPTB0785	PF02040	YPTB0785
YPTB0786	PF01022	Bacterial regulatory protein, arsR family
YPTB0787	PF04703	FaeA-like protein
YPTB0789	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB0790	PF00034	Cytochrome c
YPTB0790	PF03150	Di-haem cytochrome c peroxidase
YPTB0790	PF14376	YPTB0790
YPTB0792	PF00593	TonB dependent receptor
YPTB0792	PF07715	TonB-dependent Receptor Plug Domain
YPTB0793	PF07906	YPTB0793
YPTB0794	PF00557	Metallopeptidase family M24
YPTB0795	PF11903	YPTB0795
YPTB0796	PF05681	YPTB0796
YPTB0796	PF05683	Fumarase C-terminus
YPTB0797	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB0797	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB0798	PF01261	Xylose isomerase-like TIM barrel
YPTB0799	PF02653	YPTB0799
YPTB0800	PF02653	YPTB0800
YPTB0801	PF00005	ABC transporter
YPTB0802	PF13407	Periplasmic binding protein domain
YPTB0803	PF00455	YPTB0803
YPTB0803	PF08220	DeoR-like helix-turn-helix domain
YPTB0804	PF00596	Class II Aldolase and Adducin N-terminal domain
YPTB0805	PF00384	Molybdopterin oxidoreductase
YPTB0805	PF01568	Molydopterin dinucleotide binding domain
YPTB0805	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPTB0806	PF12800	4Fe-4S binding domain
YPTB0806	PF13247	4Fe-4S dicluster domain
YPTB0807	PF04976	YPTB0807
YPTB0808	PF02613	Nitrate reductase delta subunit
YPTB0809	PF01292	Prokaryotic cytochrome b561
YPTB0810	PF07361	Cytochrome b562
YPTB0811	PF00141	Peroxidase
YPTB0812	PF13407	Periplasmic binding protein domain
YPTB0813	PF10054	Predicted periplasmic lipoprotein (DUF2291)
YPTB0814	PF00005	ABC transporter
YPTB0815	PF02653	YPTB0815
YPTB0816	PF00456	Transketolase, thiamine diphosphate binding domain
YPTB0817	PF02779	Transketolase, pyrimidine binding domain
YPTB0817	PF02780	Transketolase, C-terminal domain
YPTB0818	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB0818	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB0819	PF02952	L-fucose isomerase, C-terminal domain
YPTB0820	PF01047	MarR family
YPTB0820	PF04198	Putative sugar-binding domain
YPTB0821	PF07690	Major Facilitator Superfamily
YPTB0822	PF02464	Competence-damaged protein
YPTB0823	PF00154	recA bacterial DNA recombination protein
YPTB0824	PF02631	RecX family
YPTB0825	PF01411	tRNA synthetases class II (A)
YPTB0825	PF02272	DHHA1 domain
YPTB0825	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YPTB0826	PF02599	Global regulator protein family
YPTB0827	PF13419	Haloacid dehalogenase-like hydrolase
YPTB0829	PF04262	Glutamate-cysteine ligase
YPTB0830	PF02664	S-Ribosylhomocysteinase (LuxS)
YPTB0831	PF00571	CBS domain
YPTB0831	PF01595	YPTB0831
YPTB0831	PF03471	Transporter associated domain
YPTB0832	PF01578	YPTB0832
YPTB0833	PF00448	SRP54-type protein, GTPase domain
YPTB0833	PF02881	SRP54-type protein, helical bundle domain
YPTB0833	PF02978	Signal peptide binding domain
YPTB0834	PF00886	Ribosomal protein S16
YPTB0835	PF01782	RimM N-terminal domain
YPTB0835	PF05239	PRC-barrel domain
YPTB0836	PF01746	tRNA (Guanine-1)-methyltransferase
YPTB0837	PF01245	Ribosomal protein L19
YPTB0838	PF04338	Protein of unknown function, DUF481
YPTB0839	PF03605	YPTB0839
YPTB0840	PF00072	Response regulator receiver domain
YPTB0840	PF04397	LytTr DNA-binding domain
YPTB0841	PF00793	DAHP synthetase I family
YPTB0842	PF01817	Chorismate mutase type II
YPTB0842	PF02153	Prephenate dehydrogenase
YPTB0843	PF00800	Prephenate dehydratase
YPTB0843	PF01817	Chorismate mutase type II
YPTB0844	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
YPTB0845	PF13525	Outer membrane lipoprotein
YPTB0846	PF00849	RNA pseudouridylate synthase
YPTB0846	PF01479	S4 domain
YPTB0847	PF02578	Multi-copper polyphenol oxidoreductase laccase
YPTB0848	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB0848	PF02861	Clp amino terminal domain
YPTB0848	PF07724	AAA domain (Cdc48 subfamily)
YPTB0848	PF10431	C-terminal, D2-small domain, of ClpB protein
YPTB0849	PF10043	YPTB0849
YPTB0850	PF13091	PLD-like domain
YPTB0851	PF00583	Acetyltransferase (GNAT) family
YPTB0851	PF13380	CoA binding domain
YPTB0851	PF13549	ATP-grasp domain
YPTB0851	PF13607	Succinyl-CoA ligase like flavodoxin domain
YPTB0852	PF03942	YPTB0852
YPTB0853	PF00085	Thioredoxin
YPTB0854	PF00588	SpoU rRNA Methylase family
YPTB0854	PF08032	RNA 2'-O ribose methyltransferase substrate binding
YPTB0855	PF07690	Major Facilitator Superfamily
YPTB0856	PF00529	HlyD family secretion protein
YPTB0856	PF16576	YPTB0856
YPTB0857	PF01047	MarR family
YPTB0858	PF05437	YPTB0858
YPTB0859	PF03591	YPTB0859
YPTB0860	PF07690	Major Facilitator Superfamily
YPTB0861	PF11533	Protein of unknown function (DUF3225)
YPTB0862	PF01425	Amidase
YPTB0863	PF13318	YPTB0863
YPTB0864	PF01380	SIS domain
YPTB0864	PF01418	Helix-turn-helix domain, rpiR family
YPTB0866	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB0867	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0868	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB0869	PF00005	ABC transporter
YPTB0870	PF00266	Aminotransferase class-V
YPTB0871	PF01546	Peptidase family M20/M25/M40
YPTB0872	PF00795	Carbon-nitrogen hydrolase
YPTB0873	PF00155	Aminotransferase class I and II
YPTB0874	PF00596	Class II Aldolase and Adducin N-terminal domain
YPTB0876	PF03079	ARD/ARD' family
YPTB0877	PF01008	Initiation factor 2 subunit family
YPTB0878	PF01636	Phosphotransferase enzyme family
YPTB0879	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPTB0879	PF08479	POTRA domain, ShlB-type
YPTB0880	PF05860	haemagglutination activity domain
YPTB0880	PF13018	YPTB0880
YPTB0882	PF03333	Adhesin biosynthesis transcription regulatory protein
YPTB0883	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
YPTB0883	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
YPTB0883	PF09317	YPTB0883
YPTB0884	PF13580	SIS domain
YPTB0885	PF13230	Glutamine amidotransferases class-II
YPTB0886	PF03734	L,D-transpeptidase catalytic domain
YPTB0887	PF05896	YPTB0887
YPTB0887	PF11973	YPTB0887
YPTB0888	PF03116	YPTB0888
YPTB0889	PF04205	FMN-binding domain
YPTB0890	PF02508	YPTB0890
YPTB0891	PF02508	YPTB0891
YPTB0892	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPTB0892	PF00175	Oxidoreductase NAD-binding domain
YPTB0892	PF00970	Oxidoreductase FAD-binding domain
YPTB0893	PF02424	ApbE family
YPTB0894	PF04400	YPTB0894
YPTB0895	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPTB0896	PF00817	impB/mucB/samB family
YPTB0896	PF11798	IMS family HHH motif
YPTB0896	PF11799	impB/mucB/samB family C-terminal domain
YPTB0897	PF01546	Peptidase family M20/M25/M40
YPTB0897	PF07687	Peptidase dimerisation domain
YPTB0898	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB0899	PF03067	Chitin binding domain
YPTB0900	PF16083	YPTB0900
YPTB0901	PF00156	Phosphoribosyl transferase domain
YPTB0902	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
YPTB0903	PF07417	Transcriptional regulator Crl
YPTB0904	PF00696	Amino acid kinase family
YPTB0904	PF01472	PUA domain
YPTB0905	PF00171	Aldehyde dehydrogenase family
YPTB0906	PF07238	PilZ domain
YPTB0906	PF07317	Flagellar regulator YcgR
YPTB0908	PF08241	Methyltransferase domain
YPTB0910	PF00398	Ribosomal RNA adenine dimethylase
YPTB0911	PF01202	Shikimate kinase
YPTB0912	PF06865	Protein of unknown function (DUF1255)
YPTB0913	PF04381	Putative exonuclease, RdgC
YPTB0914	PF00480	ROK family
YPTB0915	PF13476	AAA domain
YPTB0915	PF13558	Putative exonuclease SbcCD, C subunit
YPTB0916	PF00149	Calcineurin-like phosphoesterase
YPTB0916	PF12320	Type 5 capsule protein repressor C-terminal domain
YPTB0917	PF00072	Response regulator receiver domain
YPTB0917	PF00486	Transcriptional regulatory protein, C terminal
YPTB0918	PF00512	His Kinase A (phospho-acceptor) domain
YPTB0918	PF00989	PAS fold
YPTB0918	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB0918	PF11808	YPTB0918
YPTB0919	PF12849	PBP superfamily domain
YPTB0920	PF05525	YPTB0920
YPTB0921	PF00324	Amino acid permease
YPTB0922	PF00128	Alpha amylase, catalytic domain
YPTB0922	PF02903	Alpha amylase, N-terminal ig-like domain
YPTB0923	PF00106	short chain dehydrogenase
YPTB0924	PF01019	Gamma-glutamyltranspeptidase
YPTB0925	PF00578	AhpC/TSA family
YPTB0925	PF10417	C-terminal domain of 1-Cys peroxiredoxin
YPTB0926	PF04336	YPTB0926
YPTB0927	PF02547	Queuosine biosynthesis protein
YPTB0928	PF01702	Queuine tRNA-ribosyltransferase
YPTB0929	PF02699	Preprotein translocase subunit
YPTB0930	PF02355	Protein export membrane protein
YPTB0930	PF07549	SecD/SecF GG Motif
YPTB0930	PF13721	SecD export protein N-terminal TM region
YPTB0931	PF02355	Protein export membrane protein
YPTB0931	PF07549	SecD/SecF GG Motif
YPTB0933	PF03477	ATP cone domain
YPTB0934	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YPTB0934	PF01872	RibD C-terminal domain
YPTB0935	PF00885	6,7-dimethyl-8-ribityllumazine synthase
YPTB0936	PF01029	NusB family
YPTB0937	PF00586	AIR synthase related protein, N-terminal domain
YPTB0937	PF02769	AIR synthase related protein, C-terminal domain
YPTB0938	PF04608	Phosphatidylglycerophosphatase A
YPTB0939	PF02779	Transketolase, pyrimidine binding domain
YPTB0939	PF02780	Transketolase, C-terminal domain
YPTB0939	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
YPTB0940	PF00348	Polyprenyl synthetase
YPTB0941	PF02609	Exonuclease VII small subunit
YPTB0943	PF02568	Thiamine biosynthesis protein (ThiI)
YPTB0943	PF02926	THUMP domain
YPTB0944	PF01965	DJ-1/PfpI family
YPTB0945	PF02558	Ketopantoate reductase PanE/ApbA
YPTB0945	PF08546	Ketopantoate reductase PanE/ApbA C terminal
YPTB0946	PF04461	Protein of unknown function (DUF520)
YPTB0947	PF07690	Major Facilitator Superfamily
YPTB0948	PF01040	UbiA prenyltransferase family
YPTB0949	PF03626	YPTB0949
YPTB0950	PF00510	Cytochrome c oxidase subunit III
YPTB0951	PF00115	Cytochrome C and Quinol oxidase polypeptide I
YPTB0952	PF06481	COX Aromatic Rich Motif
YPTB0953	PF03502	Nucleoside-specific channel-forming protein, Tsx
YPTB0954	PF07690	Major Facilitator Superfamily
YPTB0955	PF03923	YPTB0955
YPTB0955	PF08139	YPTB0955
YPTB0956	PF01722	BolA-like protein
YPTB0958	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPTB0958	PF05697	Bacterial trigger factor protein (TF)
YPTB0958	PF05698	Bacterial trigger factor protein (TF) C-terminus
YPTB0959	PF00574	Clp protease
YPTB0960	PF06689	ClpX C4-type zinc finger
YPTB0960	PF07724	AAA domain (Cdc48 subfamily)
YPTB0960	PF10431	C-terminal, D2-small domain, of ClpB protein
YPTB0961	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB0961	PF02190	ATP-dependent protease La (LON) domain
YPTB0961	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPTB0962	PF00216	Bacterial DNA-binding protein
YPTB0963	PF13145	PPIC-type PPIASE domain
YPTB0963	PF13624	SurA N-terminal domain
YPTB0964	PF12836	Helix-hairpin-helix motif
YPTB0965	PF13279	Thioesterase-like superfamily
YPTB0966	PF06508	Queuosine biosynthesis protein QueC
YPTB0967	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB0967	PF12793	YPTB0967
YPTB0968	PF08282	haloacid dehalogenase-like hydrolase
YPTB0969	PF00291	Pyridoxal-phosphate dependent enzyme
YPTB0970	PF01037	AsnC family
YPTB0970	PF13412	Winged helix-turn-helix DNA-binding
YPTB0971	PF00005	ABC transporter
YPTB0971	PF00664	ABC transporter transmembrane region
YPTB0972	PF00005	ABC transporter
YPTB0972	PF00664	ABC transporter transmembrane region
YPTB0973	PF00543	Nitrogen regulatory protein P-II
YPTB0974	PF00909	Ammonium Transporter Family
YPTB0975	PF13622	Thioesterase-like superfamily
YPTB0976	PF09619	Type III secretion system lipoprotein chaperone (YscW)
YPTB0977	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPTB0978	PF05321	Haemolysin expression modulating protein
YPTB0979	PF10757	YPTB0979
YPTB0981	PF00444	Ribosomal protein L36
YPTB0982	PF01197	Ribosomal protein L31
YPTB0983	PF00873	AcrB/AcrD/AcrF family
YPTB0984	PF00529	HlyD family secretion protein
YPTB0984	PF16576	YPTB0984
YPTB0985	PF00440	Bacterial regulatory proteins, tetR family
YPTB0985	PF08361	MAATS-type transcriptional repressor, C-terminal region
YPTB0986	PF02635	DsrE/DsrF-like family
YPTB0987	PF00924	Mechanosensitive ion channel
YPTB0987	PF12794	YPTB0987
YPTB0987	PF12795	YPTB0987
YPTB0988	PF10689	YPTB0988
YPTB0989	PF07445	Primosomal replication protein priB and priC
YPTB0990	PF04304	YPTB0990
YPTB0991	PF00156	Phosphoribosyl transferase domain
YPTB0992	PF12168	YPTB0992
YPTB0992	PF12169	DNA polymerase III subunits gamma and tau domain III
YPTB0992	PF12170	DNA polymerase III tau subunit V interacting with alpha
YPTB0992	PF13177	DNA polymerase III, delta subunit
YPTB0993	PF02575	YbaB/EbfC DNA-binding family
YPTB0994	PF02132	RecR protein
YPTB0994	PF13662	Toprim domain
YPTB0995	PF00183	Hsp90 protein
YPTB0995	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB0996	PF00406	Adenylate kinase
YPTB0996	PF05191	Adenylate kinase, active site lid
YPTB0997	PF00762	Ferrochelatase
YPTB0998	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPTB0998	PF00175	Oxidoreductase NAD-binding domain
YPTB0998	PF00970	Oxidoreductase FAD-binding domain
YPTB0999	PF00483	Nucleotidyl transferase
YPTB1000	PF16363	YPTB1000
YPTB1001	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPTB1002	PF01370	NAD dependent epimerase/dehydratase family
YPTB1003	PF13450	NAD(P)-binding Rossmann-like domain
YPTB1005	PF00535	Glycosyl transferase family 2
YPTB1006	PF13692	Glycosyl transferases group 1
YPTB1008	PF00534	Glycosyl transferases group 1
YPTB1008	PF13439	Glycosyltransferase Family 4
YPTB1009	PF16363	YPTB1009
YPTB1010	PF01370	NAD dependent epimerase/dehydratase family
YPTB1011	PF00483	Nucleotidyl transferase
YPTB1011	PF01050	Mannose-6-phosphate isomerase
YPTB1012	PF00535	Glycosyl transferase family 2
YPTB1013	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPTB1013	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPTB1013	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPTB1013	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPTB1014	PF02706	Chain length determinant protein
YPTB1015	PF00294	pfkB family carbohydrate kinase
YPTB1016	PF00999	Sodium/hydrogen exchanger family
YPTB1016	PF02254	TrkA-N domain
YPTB1017	PF07690	Major Facilitator Superfamily
YPTB1020	PF04073	Aminoacyl-tRNA editing domain
YPTB1021	PF01963	YPTB1021
YPTB1022	PF00122	E1-E2 ATPase
YPTB1022	PF00403	Heavy-metal-associated domain
YPTB1022	PF00702	haloacid dehalogenase-like hydrolase
YPTB1023	PF13411	MerR HTH family regulatory protein
YPTB1024	PF01957	NfeD-like C-terminal, partner-binding
YPTB1025	PF01145	SPFH domain / Band 7 family
YPTB1026	PF00085	Thioredoxin
YPTB1026	PF14559	Tetratricopeptide repeat
YPTB1026	PF14561	Tetratricopeptide repeat
YPTB1027	PF00106	short chain dehydrogenase
YPTB1028	PF13472	GDSL-like Lipase/Acylhydrolase family
YPTB1029	PF00005	ABC transporter
YPTB1030	PF02687	YPTB1030
YPTB1031	PF02222	ATP-grasp domain
YPTB1032	PF00731	AIR carboxylase
YPTB1033	PF00149	Calcineurin-like phosphoesterase
YPTB1034	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YPTB1035	PF01406	tRNA synthetases class I (C) catalytic domain
YPTB1035	PF09190	DALR domain
YPTB1036	PF13275	S4 domain
YPTB1037	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YPTB1037	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
YPTB1038	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YPTB1044	PF01066	CDP-alcohol phosphatidyltransferase
YPTB1045	PF01148	Cytidylyltransferase family
YPTB1046	PF01553	Acyltransferase
YPTB1047	PF12146	Putative lysophospholipase
YPTB1047	PF12147	YPTB1047
YPTB1048	PF00782	Dual specificity phosphatase, catalytic domain
YPTB1048	PF14378	YPTB1048
YPTB1051	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB1051	PF03466	LysR substrate binding domain
YPTB1052	PF00248	Aldo/keto reductase family
YPTB1053	PF00248	Aldo/keto reductase family
YPTB1055	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPTB1055	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YPTB1055	PF14310	Fibronectin type III-like domain
YPTB1056	PF14345	YPTB1056
YPTB1057	PF09925	YPTB1057
YPTB1057	PF14351	YPTB1057
YPTB1058	PF00849	RNA pseudouridylate synthase
YPTB1058	PF01479	S4 domain
YPTB1059	PF08007	Cupin superfamily protein
YPTB1061	PF03212	Pertactin
YPTB1061	PF03797	Autotransporter beta-domain
YPTB1064	PF05638	Protein of unknown function (DUF796)
YPTB1065	PF06836	YPTB1065
YPTB1067	PF13693	Winged helix-turn-helix DNA-binding
YPTB1068	PF00905	Penicillin binding protein transpeptidase domain
YPTB1068	PF00912	Transglycosylase
YPTB1068	PF06832	YPTB1068
YPTB1069	PF00207	Alpha-2-macroglobulin family
YPTB1069	PF01835	MG2 domain
YPTB1069	PF07703	Alpha-2-macroglobulin family N-terminal region
YPTB1069	PF11974	Alpha-2-macroglobulin MG1 domain
YPTB1070	PF01380	SIS domain
YPTB1070	PF01418	Helix-turn-helix domain, rpiR family
YPTB1071	PF00171	Aldehyde dehydrogenase family
YPTB1072	PF00205	Thiamine pyrophosphate enzyme, central domain
YPTB1072	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPTB1072	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPTB1073	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB1073	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPTB1074	PF13407	Periplasmic binding protein domain
YPTB1075	PF00005	ABC transporter
YPTB1076	PF02653	YPTB1076
YPTB1077	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB1077	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPTB1078	PF00294	pfkB family carbohydrate kinase
YPTB1078	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
YPTB1079	PF01261	Xylose isomerase-like TIM barrel
YPTB1080	PF04962	KduI/IolB family
YPTB1082	PF00005	ABC transporter
YPTB1082	PF00664	ABC transporter transmembrane region
YPTB1083	PF03992	Antibiotic biosynthesis monooxygenase
YPTB1086	PF00196	Bacterial regulatory proteins, luxR family
YPTB1087	PF00313	'Cold-shock' DNA-binding domain
YPTB1088	PF00313	'Cold-shock' DNA-binding domain
YPTB1089	PF02537	YPTB1089
YPTB1090	PF02416	mttA/Hcf106 family
YPTB1091	PF04055	Radical SAM superfamily
YPTB1091	PF16881	YPTB1091
YPTB1092	PF03099	Biotin/lipoate A/B protein ligase family
YPTB1093	PF04359	Protein of unknown function (DUF493)
YPTB1094	PF00768	D-alanyl-D-alanine carboxypeptidase
YPTB1094	PF07943	Penicillin-binding protein 5, C-terminal domain
YPTB1095	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
YPTB1095	PF05036	Sporulation related domain
YPTB1096	PF01098	YPTB1096
YPTB1097	PF00905	Penicillin binding protein transpeptidase domain
YPTB1097	PF03717	Penicillin-binding Protein dimerisation domain
YPTB1098	PF02590	Predicted SPOUT methyltransferase
YPTB1099	PF02410	Oligomerisation domain
YPTB1100	PF01467	Cytidylyltransferase
YPTB1101	PF06144	DNA polymerase III, delta subunit
YPTB1101	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
YPTB1102	PF04390	Lipopolysaccharide-assembly
YPTB1103	PF00133	tRNA synthetases class I (I, L, M and V)
YPTB1103	PF08264	Anticodon-binding domain of tRNA
YPTB1103	PF13603	Leucyl-tRNA synthetase, Domain 2
YPTB1104	PF07295	YPTB1104
YPTB1105	PF00005	ABC transporter
YPTB1106	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1107	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1108	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB1109	PF00795	Carbon-nitrogen hydrolase
YPTB1110	PF00571	CBS domain
YPTB1110	PF03471	Transporter associated domain
YPTB1111	PF02130	Uncharacterized protein family UPF0054
YPTB1112	PF02562	PhoH-like protein
YPTB1113	PF00919	Uncharacterized protein family UPF0004
YPTB1113	PF01938	TRAM domain
YPTB1113	PF04055	Radical SAM superfamily
YPTB1114	PF01494	FAD binding domain
YPTB1115	PF00733	Asparagine synthase
YPTB1115	PF13537	Glutamine amidotransferase domain
YPTB1116	PF13242	HAD-hyrolase-like
YPTB1116	PF13344	Haloacid dehalogenase-like hydrolase
YPTB1117	PF00480	ROK family
YPTB1117	PF01047	MarR family
YPTB1118	PF01979	Amidohydrolase family
YPTB1119	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
YPTB1120	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YPTB1120	PF00367	phosphotransferase system, EIIB
YPTB1120	PF02378	Phosphotransferase system, EIIC
YPTB1121	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPTB1121	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
YPTB1122	PF03573	outer membrane porin, OprD family
YPTB1123	PF00728	Glycosyl hydrolase family 20, catalytic domain
YPTB1123	PF02838	Glycosyl hydrolase family 20, domain 2
YPTB1123	PF03173	Putative carbohydrate binding domain
YPTB1123	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
YPTB1124	PF01475	Ferric uptake regulator family
YPTB1125	PF00258	Flavodoxin
YPTB1127	PF01402	Ribbon-helix-helix protein, copG family
YPTB1128	PF12697	Alpha/beta hydrolase family
YPTB1130	PF01527	Transposase
YPTB1132	PF00665	Integrase core domain
YPTB1132	PF02796	Helix-turn-helix domain of resolvase
YPTB1133	PF01695	IstB-like ATP binding protein
YPTB1135	PF01668	SmpB protein
YPTB1136	PF03364	Polyketide cyclase / dehydrase and lipid transport
YPTB1137	PF03658	RnfH family Ubiquitin
YPTB1138	PF04355	SmpA / OmlA family
YPTB1139	PF02463	RecF/RecN/SMC N terminal domain
YPTB1140	PF01513	ATP-NAD kinase
YPTB1141	PF01025	GrpE
YPTB1142	PF00285	Citrate synthase
YPTB1143	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
YPTB1145	PF00890	FAD binding domain
YPTB1145	PF02910	Fumarate reductase flavoprotein C-term
YPTB1146	PF13085	2Fe-2S iron-sulfur cluster binding domain
YPTB1146	PF13534	4Fe-4S dicluster domain
YPTB1147	PF00676	Dehydrogenase E1 component
YPTB1147	PF02779	Transketolase, pyrimidine binding domain
YPTB1147	PF16078	YPTB1147
YPTB1147	PF16870	YPTB1147
YPTB1148	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
YPTB1148	PF00364	Biotin-requiring enzyme
YPTB1148	PF02817	e3 binding domain
YPTB1149	PF00549	CoA-ligase
YPTB1149	PF08442	ATP-grasp domain
YPTB1150	PF00549	CoA-ligase
YPTB1150	PF02629	CoA binding domain
YPTB1151	PF01654	YPTB1151
YPTB1152	PF02322	YPTB1152
YPTB1153	PF08173	YPTB1153
YPTB1154	PF09600	YPTB1154
YPTB1155	PF03061	Thioesterase superfamily
YPTB1156	PF01618	YPTB1156
YPTB1157	PF02472	Biopolymer transport protein ExbD/TolR
YPTB1158	PF06519	TolA C-terminal
YPTB1159	PF04052	TolB amino-terminal domain
YPTB1159	PF07676	WD40-like Beta Propeller Repeat
YPTB1160	PF00691	OmpA family
YPTB1161	PF13174	Tetratricopeptide repeat
YPTB1161	PF13432	Tetratricopeptide repeat
YPTB1161	PF16331	YPTB1161
YPTB1162	PF02445	Quinolinate synthetase A protein
YPTB1163	PF04973	YPTB1163
YPTB1164	PF01545	Cation efflux family
YPTB1165	PF00793	DAHP synthetase I family
YPTB1166	PF00300	Histidine phosphatase superfamily (branch 1)
YPTB1167	PF07769	YPTB1167
YPTB1168	PF01263	Aldose 1-epimerase
YPTB1169	PF00288	GHMP kinases N terminal domain
YPTB1169	PF08544	GHMP kinases C terminal
YPTB1169	PF10509	Galactokinase galactose-binding signature
YPTB1170	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
YPTB1170	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
YPTB1171	PF16363	YPTB1171
YPTB1172	PF02517	CAAX protease self-immunity
YPTB1173	PF00005	ABC transporter
YPTB1174	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB1174	PF03459	TOBE domain
YPTB1175	PF10766	Protein of unknown function (DUF2592)
YPTB1176	PF13531	Bacterial extracellular solute-binding protein
YPTB1177	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1178	PF00005	ABC transporter
YPTB1178	PF03459	TOBE domain
YPTB1179	PF08282	haloacid dehalogenase-like hydrolase
YPTB1180	PF10282	Lactonase, 7-bladed beta-propeller
YPTB1181	PF00202	Aminotransferase class-III
YPTB1182	PF04055	Radical SAM superfamily
YPTB1182	PF06968	Biotin and Thiamin Synthesis associated domain
YPTB1183	PF00155	Aminotransferase class I and II
YPTB1184	PF08241	Methyltransferase domain
YPTB1185	PF13500	AAA domain
YPTB1186	PF00005	ABC transporter
YPTB1187	PF00271	Helicase conserved C-terminal domain
YPTB1187	PF02151	UvrB/uvrC motif
YPTB1187	PF04851	Type III restriction enzyme, res subunit
YPTB1187	PF12344	Ultra-violet resistance protein B
YPTB1188	PF09905	Uncharacterized conserved protein (DUF2132)
YPTB1189	PF01933	Uncharacterised protein family UPF0052
YPTB1190	PF04055	Radical SAM superfamily
YPTB1190	PF06463	Molybdenum Cofactor Synthesis C
YPTB1190	PF13353	4Fe-4S single cluster domain
YPTB1191	PF01967	MoaC family
YPTB1192	PF02597	ThiS family
YPTB1193	PF02391	MoaE protein
YPTB1194	PF01027	Inhibitor of apoptosis-promoting Bax1
YPTB1195	PF00732	GMC oxidoreductase
YPTB1195	PF05199	GMC oxidoreductase
YPTB1196	PF00171	Aldehyde dehydrogenase family
YPTB1197	PF00440	Bacterial regulatory proteins, tetR family
YPTB1197	PF13977	Bacterial transcriptional repressor
YPTB1198	PF02028	BCCT family transporter
YPTB1199	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB1199	PF03466	LysR substrate binding domain
YPTB1200	PF00892	EamA-like transporter family
YPTB1201	PF01048	Phosphorylase superfamily
YPTB1202	PF03825	YPTB1202
YPTB1203	PF13801	Heavy-metal resistance
YPTB1204	PF00512	His Kinase A (phospho-acceptor) domain
YPTB1204	PF00989	PAS fold
YPTB1204	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB1204	PF17203	YPTB1204
YPTB1205	PF00072	Response regulator receiver domain
YPTB1205	PF00158	Sigma-54 interaction domain
YPTB1205	PF02954	Bacterial regulatory protein, Fis family
YPTB1206	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPTB1207	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB1207	PF03466	LysR substrate binding domain
YPTB1208	PF07110	EthD domain
YPTB1209	PF12698	ABC-2 family transporter protein
YPTB1210	PF12698	ABC-2 family transporter protein
YPTB1211	PF00005	ABC transporter
YPTB1212	PF16576	YPTB1212
YPTB1213	PF00440	Bacterial regulatory proteins, tetR family
YPTB1213	PF09209	Domain of unknown function (DUF1956)
YPTB1214	PF00270	DEAD/DEAH box helicase
YPTB1214	PF00271	Helicase conserved C-terminal domain
YPTB1216	PF01207	Dihydrouridine synthase (Dus)
YPTB1217	PF00768	D-alanyl-D-alanine carboxypeptidase
YPTB1218	PF01565	FAD binding domain
YPTB1218	PF09330	D-lactate dehydrogenase, membrane binding
YPTB1219	PF01928	CYTH domain
YPTB1220	PF01844	HNH endonuclease
YPTB1221	PF05076	Suppressor of fused protein (SUFU)
YPTB1222	PF04226	YPTB1222
YPTB1223	PF00005	ABC transporter
YPTB1224	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
YPTB1225	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1226	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1227	PF07308	YPTB1227
YPTB1228	PF13433	Periplasmic binding protein domain
YPTB1229	PF02653	YPTB1229
YPTB1229	PF13646	HEAT repeats
YPTB1230	PF02653	YPTB1230
YPTB1231	PF00005	ABC transporter
YPTB1231	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPTB1232	PF00005	ABC transporter
YPTB1233	PF13640	2OG-Fe(II) oxygenase superfamily
YPTB1234	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YPTB1235	PF00581	Rhodanese-like domain
YPTB1236	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPTB1237	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1238	PF00005	ABC transporter
YPTB1239	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1240	PF13520	Amino acid permease
YPTB1241	PF01276	Orn/Lys/Arg decarboxylase, major domain
YPTB1241	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YPTB1241	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YPTB1243	PF00892	EamA-like transporter family
YPTB1244	PF00267	Gram-negative porin
YPTB1245	PF06733	DEAD_2
YPTB1245	PF13307	Helicase C-terminal domain
YPTB1246	PF00199	Catalase
YPTB1246	PF06628	Catalase-related immune-responsive
YPTB1247	PF07437	YPTB1247
YPTB1248	PF03222	Tryptophan/tyrosine permease family
YPTB1250	PF00994	Probable molybdopterin binding domain
YPTB1251	PF03974	Ecotin
YPTB1252	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPTB1253	PF00268	Ribonucleotide reductase, small chain
YPTB1254	PF00317	Ribonucleotide reductase, all-alpha domain
YPTB1254	PF02867	Ribonucleotide reductase, barrel domain
YPTB1254	PF03477	ATP cone domain
YPTB1255	PF13489	Methyltransferase domain
YPTB1256	PF00521	DNA gyrase/topoisomerase IV, subunit A
YPTB1256	PF03989	DNA gyrase C-terminal domain, beta-propeller
YPTB1257	PF00072	Response regulator receiver domain
YPTB1257	PF00512	His Kinase A (phospho-acceptor) domain
YPTB1257	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB1257	PF09456	RcsC Alpha-Beta-Loop (ABL)
YPTB1258	PF00072	Response regulator receiver domain
YPTB1258	PF00196	Bacterial regulatory proteins, luxR family
YPTB1259	PF01627	Hpt domain
YPTB1259	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB1259	PF16359	YPTB1259
YPTB1260	PF07690	Major Facilitator Superfamily
YPTB1261	PF00267	Gram-negative porin
YPTB1262	PF00144	Beta-lactamase
YPTB1263	PF13347	MFS/sugar transport protein
YPTB1264	PF12706	Beta-lactamase superfamily domain
YPTB1265	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPTB1265	PF00672	HAMP domain
YPTB1265	PF02743	Cache domain
YPTB1266	PF01278	Omptin family
YPTB1267	PF06183	DinI-like family
YPTB1268	PF00717	Peptidase S24-like
YPTB1268	PF01381	Helix-turn-helix
YPTB1269	PF06530	YPTB1269
YPTB1270	PF07005	Protein of unknown function, DUF1537
YPTB1270	PF17042	YPTB1270
YPTB1272	PF00455	YPTB1272
YPTB1272	PF08220	DeoR-like helix-turn-helix domain
YPTB1273	PF01261	Xylose isomerase-like TIM barrel
YPTB1276	PF10948	YPTB1276
YPTB1277	PF04984	Phage tail sheath protein
YPTB1277	PF17482	YPTB1277
YPTB1278	PF10618	YPTB1278
YPTB1279	PF10109	YPTB1279
YPTB1281	PF07157	YPTB1281
YPTB1282	PF05954	Phage late control gene D protein (GPD)
YPTB1283	PF06890	Bacteriophage Mu Gp45 protein
YPTB1284	PF07409	YPTB1284
YPTB1285	PF04865	YPTB1285
YPTB1286	PF10076	YPTB1286
YPTB1288	PF02413	YPTB1288
YPTB1289	PF01380	SIS domain
YPTB1289	PF01418	Helix-turn-helix domain, rpiR family
YPTB1290	PF00232	Glycosyl hydrolase family 1
YPTB1292	PF09204	Bacterial self-protective colicin-like immunity
YPTB1296	PF00884	Sulfatase
YPTB1296	PF11893	YPTB1296
YPTB1297	PF07208	Protein of unknown function (DUF1414)
YPTB1298	PF04245	YPTB1298
YPTB1299	PF01386	Ribosomal L25p family
YPTB1300	PF00271	Helicase conserved C-terminal domain
YPTB1300	PF04851	Type III restriction enzyme, res subunit
YPTB1301	PF00849	RNA pseudouridylate synthase
YPTB1301	PF01479	S4 domain
YPTB1302	PF07690	Major Facilitator Superfamily
YPTB1303	PF13989	YPTB1303
YPTB1304	PF00005	ABC transporter
YPTB1304	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPTB1305	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1305	PF12911	YPTB1305
YPTB1306	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1307	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB1308	PF00563	EAL domain
YPTB1308	PF12792	YPTB1308
YPTB1309	PF00877	NlpC/P60 family
YPTB1310	PF01569	PAP2 superfamily
YPTB1311	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YPTB1311	PF07683	Cobalamin synthesis protein cobW C-terminal domain
YPTB1313	PF00392	Bacterial regulatory proteins, gntR family
YPTB1313	PF07729	FCD domain
YPTB1314	PF01232	Mannitol dehydrogenase Rossmann domain
YPTB1314	PF08125	Mannitol dehydrogenase C-terminal domain
YPTB1315	PF03786	D-mannonate dehydratase (UxuA)
YPTB1316	PF01132	Elongation factor P (EF-P) OB domain
YPTB1316	PF08207	Elongation factor P (EF-P) KOW-like domain
YPTB1316	PF09285	Elongation factor P, C-terminal
YPTB1317	PF03222	Tryptophan/tyrosine permease family
YPTB1318	PF03692	YPTB1318
YPTB1319	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB1320	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPTB1320	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPTB1321	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPTB1322	PF00171	Aldehyde dehydrogenase family
YPTB1323	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB1323	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB1324	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YPTB1325	PF13407	Periplasmic binding protein domain
YPTB1326	PF00005	ABC transporter
YPTB1327	PF02653	YPTB1327
YPTB1328	PF00293	NUDIX domain
YPTB1329	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPTB1329	PF00381	PTS HPr component phosphorylation site
YPTB1330	PF00294	pfkB family carbohydrate kinase
YPTB1331	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPTB1331	PF02378	Phosphotransferase system, EIIC
YPTB1332	PF00486	Transcriptional regulatory protein, C terminal
YPTB1333	PF17550	YPTB1333
YPTB1335	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB1335	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB1336	PF00577	Outer membrane usher protein
YPTB1336	PF13953	PapC C-terminal domain
YPTB1336	PF13954	PapC N-terminal domain
YPTB1337	PF01261	Xylose isomerase-like TIM barrel
YPTB1338	PF03601	YPTB1338
YPTB1339	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB1339	PF03466	LysR substrate binding domain
YPTB1340	PF00324	Amino acid permease
YPTB1341	PF01497	Periplasmic binding protein
YPTB1342	PF01032	FecCD transport family
YPTB1343	PF00005	ABC transporter
YPTB1344	PF00593	TonB dependent receptor
YPTB1344	PF07715	TonB-dependent Receptor Plug Domain
YPTB1345	PF00043	Glutathione S-transferase, C-terminal domain
YPTB1345	PF13417	Glutathione S-transferase, N-terminal domain
YPTB1346	PF12710	haloacid dehalogenase-like hydrolase
YPTB1347	PF03171	2OG-Fe(II) oxygenase superfamily
YPTB1347	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
YPTB1348	PF03180	NLPA lipoprotein
YPTB1349	PF00005	ABC transporter
YPTB1349	PF09383	NIL domain
YPTB1350	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1351	PF00768	D-alanyl-D-alanine carboxypeptidase
YPTB1351	PF07943	Penicillin-binding protein 5, C-terminal domain
YPTB1352	PF03222	Tryptophan/tyrosine permease family
YPTB1353	PF00455	YPTB1353
YPTB1353	PF08220	DeoR-like helix-turn-helix domain
YPTB1354	PF01791	DeoC/LacD family aldolase
YPTB1355	PF01569	PAP2 superfamily
YPTB1356	PF01569	PAP2 superfamily
YPTB1357	PF02080	TrkA-C domain
YPTB1357	PF06826	YPTB1357
YPTB1358	PF00462	Glutaredoxin
YPTB1359	PF07214	YPTB1359
YPTB1360	PF10722	Putative bacterial sensory transduction regulator
YPTB1361	PF13416	Bacterial extracellular solute-binding protein
YPTB1362	PF00005	ABC transporter
YPTB1362	PF08402	TOBE domain
YPTB1363	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1365	PF10767	YPTB1365
YPTB1366	PF05958	tRNA (Uracil-5-)-methyltransferase
YPTB1367	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB1368	PF01145	SPFH domain / Band 7 family
YPTB1369	PF01497	Periplasmic binding protein
YPTB1370	PF01032	FecCD transport family
YPTB1371	PF00005	ABC transporter
YPTB1372	PF03059	Nicotianamine synthase protein
YPTB1373	PF10100	YPTB1373
YPTB1374	PF00892	EamA-like transporter family
YPTB1375	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1376	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1377	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB1378	PF00005	ABC transporter
YPTB1379	PF01817	Chorismate mutase type II
YPTB1380	PF12883	Protein of unknown function (DUF3828)
YPTB1381	PF01370	NAD dependent epimerase/dehydratase family
YPTB1382	PF11066	YPTB1382
YPTB1382	PF13460	NADH(P)-binding
YPTB1383	PF01212	Beta-eliminating lyase
YPTB1384	PF00205	Thiamine pyrophosphate enzyme, central domain
YPTB1384	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPTB1384	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPTB1385	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPTB1385	PF00175	Oxidoreductase NAD-binding domain
YPTB1385	PF00970	Oxidoreductase FAD-binding domain
YPTB1386	PF03063	Prismane/CO dehydrogenase family
YPTB1387	PF03956	YPTB1387
YPTB1388	PF11398	Protein of unknown function (DUF2813)
YPTB1389	PF04393	YPTB1389
YPTB1390	PF16576	YPTB1390
YPTB1391	PF00005	ABC transporter
YPTB1391	PF02687	YPTB1391
YPTB1391	PF12704	MacB-like periplasmic core domain
YPTB1392	PF00313	'Cold-shock' DNA-binding domain
YPTB1393	PF02617	ATP-dependent Clp protease adaptor protein ClpS
YPTB1394	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB1394	PF02861	Clp amino terminal domain
YPTB1394	PF07724	AAA domain (Cdc48 subfamily)
YPTB1394	PF10431	C-terminal, D2-small domain, of ClpB protein
YPTB1395	PF01176	Translation initiation factor 1A / IF-1
YPTB1396	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
YPTB1397	PF00005	ABC transporter
YPTB1397	PF00664	ABC transporter transmembrane region
YPTB1398	PF00005	ABC transporter
YPTB1398	PF00664	ABC transporter transmembrane region
YPTB1399	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB1400	PF01037	AsnC family
YPTB1400	PF13412	Winged helix-turn-helix DNA-binding
YPTB1401	PF01580	FtsK/SpoIIIE family
YPTB1401	PF09397	Ftsk gamma domain
YPTB1401	PF13491	YPTB1401
YPTB1402	PF03548	Outer membrane lipoprotein carrier protein LolA
YPTB1403	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB1403	PF12002	MgsA AAA+ ATPase C terminal
YPTB1403	PF16193	YPTB1403
YPTB1404	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPTB1404	PF02403	Seryl-tRNA synthetase N-terminal domain
YPTB1405	PF07690	Major Facilitator Superfamily
YPTB1406	PF04055	Radical SAM superfamily
YPTB1406	PF13353	4Fe-4S single cluster domain
YPTB1407	PF01755	YPTB1407
YPTB1408	PF01228	Glycine radical
YPTB1408	PF02901	Pyruvate formate lyase
YPTB1409	PF01226	Formate/nitrite transporter
YPTB1410	PF02624	YcaO-like family
YPTB1411	PF00710	Asparaginase
YPTB1412	PF03895	YadA-like C-terminal region
YPTB1413	PF03895	YadA-like C-terminal region
YPTB1414	PF00266	Aminotransferase class-V
YPTB1415	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YPTB1416	PF02224	Cytidylate kinase
YPTB1417	PF00575	S1 RNA binding domain
YPTB1418	PF00216	Bacterial DNA-binding protein
YPTB1419	PF00753	Metallo-beta-lactamase superfamily
YPTB1419	PF03772	YPTB1419
YPTB1419	PF13567	YPTB1419
YPTB1420	PF00005	ABC transporter
YPTB1420	PF00664	ABC transporter transmembrane region
YPTB1421	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
YPTB1422	PF07063	Domain of unknown function (DUF1338)
YPTB1423	PF00313	'Cold-shock' DNA-binding domain
YPTB1424	PF03966	Trm112p-like protein
YPTB1425	PF02348	Cytidylyltransferase
YPTB1426	PF03881	Fructosamine kinase
YPTB1427	PF13847	Methyltransferase domain
YPTB1428	PF03882	KicB killing factor
YPTB1428	PF17192	YPTB1428
YPTB1428	PF17193	YPTB1428
YPTB1429	PF04288	MukE-like family
YPTB1430	PF04310	MukB N-terminal
YPTB1430	PF13558	Putative exonuclease SbcCD, C subunit
YPTB1430	PF16330	YPTB1430
YPTB1431	PF01471	Putative peptidoglycan binding domain
YPTB1431	PF03734	L,D-transpeptidase catalytic domain
YPTB1432	PF05951	YPTB1432
YPTB1433	PF00753	Metallo-beta-lactamase superfamily
YPTB1434	PF00155	Aminotransferase class I and II
YPTB1435	PF00267	Gram-negative porin
YPTB1436	PF00152	tRNA synthetases class II (D, K and N)
YPTB1436	PF01336	OB-fold nucleic acid binding domain
YPTB1437	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
YPTB1438	PF01433	Peptidase family M1
YPTB1438	PF11940	Domain of unknown function (DUF3458)
YPTB1438	PF17432	YPTB1438
YPTB1439	PF01180	Dihydroorotate dehydrogenase
YPTB1440	PF07126	YPTB1440
YPTB1441	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPTB1441	PF03473	MOSC domain
YPTB1441	PF03476	MOSC N-terminal beta barrel domain
YPTB1442	PF01170	Putative RNA methylase family UPF0020
YPTB1442	PF02926	THUMP domain
YPTB1442	PF10672	S-adenosylmethionine-dependent methyltransferase
YPTB1443	PF00005	ABC transporter
YPTB1443	PF12848	ABC transporter
YPTB1443	PF16326	YPTB1443
YPTB1444	PF04403	YPTB1444
YPTB1445	PF02470	YPTB1445
YPTB1446	PF03886	Protein of unknown function (DUF330)
YPTB1448	PF04957	Ribosome modulation factor
YPTB1449	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPTB1449	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPTB1450	PF07977	FabA-like domain
YPTB1451	PF05362	Lon protease (S16) C-terminal proteolytic domain
YPTB1451	PF13654	AAA domain
YPTB1452	PF06303	Organiser of macrodomain of Terminus of chromosome
YPTB1452	PF17414	YPTB1452
YPTB1453	PF00691	OmpA family
YPTB1453	PF01389	OmpA-like transmembrane domain
YPTB1454	PF03846	Cell division inhibitor SulA
YPTB1455	PF04993	TfoX N-terminal domain
YPTB1455	PF04994	TfoX C-terminal domain
YPTB1456	PF12805	YPTB1456
YPTB1456	PF13515	YPTB1456
YPTB1457	PF03733	YPTB1457
YPTB1458	PF00580	UvrD/REP helicase N-terminal domain
YPTB1458	PF12462	YPTB1458
YPTB1458	PF13361	UvrD-like helicase C-terminal domain
YPTB1459	PF02142	MGS-like domain
YPTB1460	PF09829	YPTB1460
YPTB1461	PF13380	CoA binding domain
YPTB1462	PF08755	Hemimethylated DNA-binding protein YccV like
YPTB1463	PF10672	S-adenosylmethionine-dependent methyltransferase
YPTB1464	PF00708	Acylphosphatase
YPTB1465	PF04358	DsrC like protein
YPTB1469	PF01565	FAD binding domain
YPTB1469	PF13480	Acetyltransferase (GNAT) domain
YPTB1470	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB1472	PF07977	FabA-like domain
YPTB1473	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPTB1473	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPTB1474	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB1475	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
YPTB1475	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
YPTB1476	PF00378	Enoyl-CoA hydratase/isomerase family
YPTB1477	PF00378	Enoyl-CoA hydratase/isomerase family
YPTB1478	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB1479	PF13924	YPTB1479
YPTB1480	PF00550	Phosphopantetheine attachment site
YPTB1481	PF00698	Acyl transferase domain
YPTB1483	PF05591	YPTB1483
YPTB1484	PF05943	YPTB1484
YPTB1485	PF05936	YPTB1485
YPTB1486	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPTB1487	PF00691	OmpA family
YPTB1488	PF05638	Protein of unknown function (DUF796)
YPTB1489	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB1489	PF07724	AAA domain (Cdc48 subfamily)
YPTB1489	PF10431	C-terminal, D2-small domain, of ClpB protein
YPTB1490	PF05954	Phage late control gene D protein (GPD)
YPTB1490	PF10106	YPTB1490
YPTB1490	PF13296	YPTB1490
YPTB1493	PF05954	Phage late control gene D protein (GPD)
YPTB1493	PF10106	YPTB1493
YPTB1493	PF13296	YPTB1493
YPTB1494	PF14485	YPTB1494
YPTB1495	PF01476	LysM domain
YPTB1495	PF05257	CHAP domain
YPTB1498	PF06744	YPTB1498
YPTB1498	PF06761	YPTB1498
YPTB1499	PF06812	YPTB1499
YPTB1499	PF16989	YPTB1499
YPTB1500	PF05488	PAAR motif
YPTB1500	PF15607	YPTB1500
YPTB1502	PF05947	YPTB1502
YPTB1503	PF06996	YPTB1503
YPTB1504	PF12790	Type VI secretion lipoprotein
YPTB1505	PF04965	Gene 25-like lysozyme
YPTB1506	PF06812	YPTB1506
YPTB1506	PF12486	YPTB1506
YPTB1507	PF16809	YPTB1507
YPTB1508	PF00005	ABC transporter
YPTB1508	PF12848	ABC transporter
YPTB1509	PF16809	YPTB1509
YPTB1510	PF00899	ThiF family
YPTB1511	PF00994	Probable molybdopterin binding domain
YPTB1511	PF03453	MoeA N-terminal region (domain I and II)
YPTB1511	PF03454	MoeA C-terminal region (domain IV)
YPTB1512	PF04055	Radical SAM superfamily
YPTB1513	PF00005	ABC transporter
YPTB1514	PF13437	HlyD family secretion protein
YPTB1516	PF00756	Putative esterase
YPTB1517	PF00107	Zinc-binding dehydrogenase
YPTB1517	PF08240	Alcohol dehydrogenase GroES-like domain
YPTB1518	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB1518	PF03466	LysR substrate binding domain
YPTB1519	PF06779	YPTB1519
YPTB1520	PF01227	GTP cyclohydrolase I
YPTB1521	PF04235	YPTB1521
YPTB1522	PF13407	Periplasmic binding protein domain
YPTB1523	PF00005	ABC transporter
YPTB1524	PF02653	YPTB1524
YPTB1525	PF02698	DUF218 domain
YPTB1526	PF00390	Malic enzyme, N-terminal domain
YPTB1526	PF03949	Malic enzyme, NAD binding domain
YPTB1527	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
YPTB1527	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
YPTB1528	PF04172	YPTB1528
YPTB1529	PF03788	YPTB1529
YPTB1530	PF07690	Major Facilitator Superfamily
YPTB1531	PF08309	YPTB1531
YPTB1532	PF13407	Periplasmic binding protein domain
YPTB1534	PF01588	Putative tRNA binding domain
YPTB1534	PF09334	tRNA synthetases class I (M)
YPTB1535	PF10609	ParA/MinD ATPase like
YPTB1536	PF00485	Phosphoribulokinase / Uridine kinase family
YPTB1537	PF00692	dUTPase
YPTB1538	PF05170	YPTB1538
YPTB1538	PF13502	YPTB1538
YPTB1539	PF00571	CBS domain
YPTB1539	PF03471	Transporter associated domain
YPTB1539	PF03741	YPTB1539
YPTB1540	PF06276	Ferric iron reductase FhuF-like transporter
YPTB1540	PF11575	YPTB1540
YPTB1541	PF00282	Pyridoxal-dependent decarboxylase conserved domain
YPTB1542	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YPTB1543	PF13523	Acetyltransferase (GNAT) domain
YPTB1544	PF04183	IucA / IucC family
YPTB1544	PF06276	Ferric iron reductase FhuF-like transporter
YPTB1545	PF00005	ABC transporter
YPTB1546	PF01032	FecCD transport family
YPTB1547	PF01032	FecCD transport family
YPTB1548	PF01497	Periplasmic binding protein
YPTB1549	PF00593	TonB dependent receptor
YPTB1549	PF07715	TonB-dependent Receptor Plug Domain
YPTB1550	PF04183	IucA / IucC family
YPTB1550	PF06276	Ferric iron reductase FhuF-like transporter
YPTB1551	PF00483	Nucleotidyl transferase
YPTB1552	PF00483	Nucleotidyl transferase
YPTB1553	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
YPTB1553	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YPTB1554	PF01797	Transposase IS200 like
YPTB1555	PF01502	Phosphoribosyl-AMP cyclohydrolase
YPTB1555	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
YPTB1556	PF00977	Histidine biosynthesis protein
YPTB1557	PF00977	Histidine biosynthesis protein
YPTB1558	PF00117	Glutamine amidotransferase class-I
YPTB1559	PF00475	Imidazoleglycerol-phosphate dehydratase
YPTB1559	PF13242	HAD-hyrolase-like
YPTB1560	PF00155	Aminotransferase class I and II
YPTB1561	PF00815	Histidinol dehydrogenase
YPTB1562	PF01634	ATP phosphoribosyltransferase
YPTB1562	PF08029	HisG, C-terminal domain
YPTB1563	PF01370	NAD dependent epimerase/dehydratase family
YPTB1565	PF02653	YPTB1565
YPTB1566	PF00005	ABC transporter
YPTB1567	PF00465	Iron-containing alcohol dehydrogenase
YPTB1568	PF13520	Amino acid permease
YPTB1569	PF00929	Exonuclease
YPTB1569	PF08411	Exonuclease C-terminal
YPTB1570	PF07993	Male sterility protein
YPTB1571	PF04363	YPTB1571
YPTB1572	PF02369	Bacterial Ig-like domain (group 1)
YPTB1572	PF09134	Invasin, domain 3
YPTB1572	PF11924	Protein of unknown function (DUF3442)
YPTB1573	PF07690	Major Facilitator Superfamily
YPTB1574	PF04134	YPTB1574
YPTB1575	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB1576	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPTB1577	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YPTB1577	PF13378	Enolase C-terminal domain-like
YPTB1578	PF01070	FMN-dependent dehydrogenase
YPTB1579	PF00764	Arginosuccinate synthase
YPTB1580	PF01554	MatE
YPTB1581	PF07690	Major Facilitator Superfamily
YPTB1582	PF01522	Polysaccharide deacetylase
YPTB1584	PF09831	YPTB1584
YPTB1585	PF00665	Integrase core domain
YPTB1585	PF02796	Helix-turn-helix domain of resolvase
YPTB1586	PF01695	IstB-like ATP binding protein
YPTB1587	PF01258	Prokaryotic dksA/traR C4-type zinc finger
YPTB1588	PF11198	YPTB1588
YPTB1591	PF00593	TonB dependent receptor
YPTB1591	PF07715	TonB-dependent Receptor Plug Domain
YPTB1592	PF00501	AMP-binding enzyme
YPTB1592	PF13193	AMP-binding enzyme C-terminal domain
YPTB1593	PF00975	Thioesterase domain
YPTB1594	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB1595	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPTB1595	PF00550	Phosphopantetheine attachment site
YPTB1595	PF00668	Condensation domain
YPTB1595	PF00698	Acyl transferase domain
YPTB1595	PF00975	Thioesterase domain
YPTB1595	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPTB1595	PF08242	Methyltransferase domain
YPTB1595	PF08659	KR domain
YPTB1595	PF16197	YPTB1595
YPTB1596	PF00501	AMP-binding enzyme
YPTB1596	PF00550	Phosphopantetheine attachment site
YPTB1596	PF00668	Condensation domain
YPTB1596	PF08242	Methyltransferase domain
YPTB1597	PF12833	Helix-turn-helix domain
YPTB1598	PF00005	ABC transporter
YPTB1598	PF00664	ABC transporter transmembrane region
YPTB1599	PF00005	ABC transporter
YPTB1599	PF00664	ABC transporter transmembrane region
YPTB1600	PF07690	Major Facilitator Superfamily
YPTB1601	PF00425	chorismate binding enzyme
YPTB1603	PF00072	Response regulator receiver domain
YPTB1603	PF00196	Bacterial regulatory proteins, luxR family
YPTB1604	PF06808	YPTB1604
YPTB1605	PF04290	YPTB1605
YPTB1606	PF03480	Bacterial extracellular solute-binding protein, family 7
YPTB1607	PF01648	4'-phosphopantetheinyl transferase superfamily
YPTB1608	PF02065	Melibiase
YPTB1608	PF16875	YPTB1608
YPTB1609	PF01306	LacY proton/sugar symporter
YPTB1610	PF00356	Bacterial regulatory proteins, lacI family
YPTB1610	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPTB1611	PF06167	Glucose-regulated metallo-peptidase M90
YPTB1612	PF03795	YCII-related domain
YPTB1613	PF01163	RIO1 family
YPTB1614	PF00005	ABC transporter
YPTB1614	PF00664	ABC transporter transmembrane region
YPTB1615	PF12833	Helix-turn-helix domain
YPTB1616	PF10964	YPTB1616
YPTB1617	PF13996	YPTB1617
YPTB1618	PF13974	YPTB1618
YPTB1619	PF10765	Protein of unknown function (DUF2591)
YPTB1620	PF13269	YPTB1620
YPTB1621	PF00324	Amino acid permease
YPTB1622	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
YPTB1623	PF10736	YPTB1623
YPTB1624	PF00313	'Cold-shock' DNA-binding domain
YPTB1625	PF02578	Multi-copper polyphenol oxidoreductase laccase
YPTB1626	PF13847	Methyltransferase domain
YPTB1628	PF00989	PAS fold
YPTB1628	PF00990	GGDEF domain
YPTB1628	PF13426	PAS domain
YPTB1629	PF00593	TonB dependent receptor
YPTB1629	PF07715	TonB-dependent Receptor Plug Domain
YPTB1630	PF02659	YPTB1630
YPTB1631	PF06173	YPTB1631
YPTB1632	PF03613	YPTB1632
YPTB1633	PF03609	YPTB1633
YPTB1634	PF03610	PTS system fructose IIA component
YPTB1634	PF03830	PTS system sorbose subfamily IIB component
YPTB1635	PF00571	CBS domain
YPTB1635	PF03471	Transporter associated domain
YPTB1635	PF03741	YPTB1635
YPTB1636	PF01047	MarR family
YPTB1637	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPTB1638	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPTB1639	PF00171	Aldehyde dehydrogenase family
YPTB1640	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YPTB1641	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
YPTB1643	PF03328	HpcH/HpaI aldolase/citrate lyase family
YPTB1644	PF07690	Major Facilitator Superfamily
YPTB1644	PF11700	YPTB1644
YPTB1645	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
YPTB1645	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
YPTB1646	PF01613	Flavin reductase like domain
YPTB1647	PF03313	YPTB1647
YPTB1647	PF03315	Serine dehydratase beta chain
YPTB1648	PF00293	NUDIX domain
YPTB1649	PF00425	chorismate binding enzyme
YPTB1649	PF04715	Anthranilate synthase component I, N terminal region
YPTB1650	PF03701	YPTB1650
YPTB1651	PF02222	ATP-grasp domain
YPTB1652	PF00270	DEAD/DEAH box helicase
YPTB1652	PF00271	Helicase conserved C-terminal domain
YPTB1652	PF03880	DbpA RNA binding domain
YPTB1653	PF07130	YebG protein
YPTB1654	PF04266	ASCH domain
YPTB1655	PF13995	YebF-like protein
YPTB1656	PF00326	Prolyl oligopeptidase family
YPTB1656	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
YPTB1657	PF00561	alpha/beta hydrolase fold
YPTB1658	PF06440	DNA polymerase III, theta subunit
YPTB1659	PF00210	Ferritin-like domain
YPTB1660	PF04234	CopC domain
YPTB1661	PF05425	YPTB1661
YPTB1662	PF10709	YPTB1662
YPTB1663	PF07377	Protein of unknown function (DUF1493)
YPTB1665	PF01312	FlhB HrpN YscU SpaS Family
YPTB1666	PF00771	FHIPEP family
YPTB1667	PF06366	YPTB1667
YPTB1668	PF02369	Bacterial Ig-like domain (group 1)
YPTB1668	PF07979	Intimin C-type lectin domain
YPTB1668	PF09134	Invasin, domain 3
YPTB1668	PF11924	Protein of unknown function (DUF3442)
YPTB1669	PF05130	FlgN protein
YPTB1670	PF04316	Anti-sigma-28 factor, FlgM
YPTB1671	PF13144	SAF-like
YPTB1672	PF00460	Flagella basal body rod protein
YPTB1673	PF00460	Flagella basal body rod protein
YPTB1673	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB1674	PF03963	YPTB1674
YPTB1674	PF13860	FlgD Ig-like domain
YPTB1674	PF13861	FlgD Tudor-like domain
YPTB1675	PF00460	Flagella basal body rod protein
YPTB1675	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB1675	PF07559	Flagellar basal body protein FlaE
YPTB1676	PF00460	Flagella basal body rod protein
YPTB1676	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB1677	PF00460	Flagella basal body rod protein
YPTB1677	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB1678	PF02107	YPTB1678
YPTB1679	PF02119	YPTB1679
YPTB1680	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
YPTB1680	PF10135	YPTB1680
YPTB1681	PF00460	Flagella basal body rod protein
YPTB1681	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB1682	PF00669	Bacterial flagellin N-terminal helical region
YPTB1683	PF04198	Putative sugar-binding domain
YPTB1684	PF00596	Class II Aldolase and Adducin N-terminal domain
YPTB1684	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB1685	PF02653	YPTB1685
YPTB1686	PF13407	Periplasmic binding protein domain
YPTB1687	PF00005	ABC transporter
YPTB1688	PF02653	YPTB1688
YPTB1689	PF00294	pfkB family carbohydrate kinase
YPTB1691	PF01311	YPTB1691
YPTB1692	PF01313	YPTB1692
YPTB1693	PF00813	YPTB1693
YPTB1694	PF04347	YPTB1694
YPTB1695	PF01052	Surface presentation of antigens (SPOA)
YPTB1695	PF16973	YPTB1695
YPTB1696	PF01052	Surface presentation of antigens (SPOA)
YPTB1696	PF02154	Flagellar motor switch protein FliM
YPTB1697	PF03748	YPTB1697
YPTB1698	PF02120	Flagellar hook-length control protein FliK
YPTB1699	PF02050	Flagellar FliJ protein
YPTB1700	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPTB1701	PF02108	YPTB1701
YPTB1702	PF01706	FliG C-terminal domain
YPTB1702	PF14841	FliG middle domain
YPTB1702	PF14842	FliG N-terminal domain
YPTB1703	PF01514	Secretory protein of YscJ/FliF family
YPTB1703	PF08345	YPTB1703
YPTB1704	PF02049	YPTB1704
YPTB1708	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPTB1709	PF13487	HD domain
YPTB1710	PF12833	Helix-turn-helix domain
YPTB1711	PF05400	Flagellar protein FliT
YPTB1712	PF02561	Flagellar protein FliS
YPTB1713	PF02465	YPTB1713
YPTB1713	PF07195	YPTB1713
YPTB1713	PF07196	Flagellin hook IN motif
YPTB1714	PF00669	Bacterial flagellin N-terminal helical region
YPTB1714	PF00700	Bacterial flagellin C-terminal helical region
YPTB1715	PF04539	Sigma-70 region 3
YPTB1715	PF04542	Sigma-70 region 2
YPTB1715	PF04545	Sigma-70, region 4
YPTB1716	PF02899	Phage integrase, N-terminal SAM-like domain
YPTB1717	PF00291	Pyridoxal-phosphate dependent enzyme
YPTB1718	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB1719	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1720	PF00005	ABC transporter
YPTB1723	PF00171	Aldehyde dehydrogenase family
YPTB1723	PF01619	Proline dehydrogenase
YPTB1723	PF14850	DNA-binding domain of Proline dehydrogenase
YPTB1724	PF00474	Sodium:solute symporter family
YPTB1725	PF03239	YPTB1725
YPTB1726	PF09375	Imelysin
YPTB1726	PF13473	Cupredoxin-like domain
YPTB1727	PF04261	Dyp-type peroxidase family
YPTB1728	PF03358	NADPH-dependent FMN reductase
YPTB1729	PF01344	Kelch motif
YPTB1730	PF00324	Amino acid permease
YPTB1731	PF13505	Outer membrane protein beta-barrel domain
YPTB1733	PF06942	YPTB1733
YPTB1734	PF10769	YPTB1734
YPTB1735	PF00072	Response regulator receiver domain
YPTB1735	PF00196	Bacterial regulatory proteins, luxR family
YPTB1736	PF01541	GIY-YIG catalytic domain
YPTB1736	PF02151	UvrB/uvrC motif
YPTB1736	PF08459	UvrC Helix-hairpin-helix N-terminal
YPTB1736	PF14520	Helix-hairpin-helix domain
YPTB1737	PF01066	CDP-alcohol phosphatidyltransferase
YPTB1738	PF04606	YPTB1738
YPTB1739	PF05954	Phage late control gene D protein (GPD)
YPTB1740	PF06995	YPTB1740
YPTB1741	PF10145	YPTB1741
YPTB1742	PF06528	YPTB1742
YPTB1743	PF10109	YPTB1743
YPTB1744	PF04985	YPTB1744
YPTB1745	PF04984	Phage tail sheath protein
YPTB1745	PF17482	YPTB1745
YPTB1746	PF16778	YPTB1746
YPTB1747	PF12571	YPTB1747
YPTB1748	PF09684	YPTB1748
YPTB1749	PF04865	YPTB1749
YPTB1750	PF04965	Gene 25-like lysozyme
YPTB1751	PF04717	Phage-related baseplate assembly protein
YPTB1752	PF05069	YPTB1752
YPTB1753	PF06891	YPTB1753
YPTB1755	PF00959	Phage lysozyme
YPTB1756	PF16080	YPTB1756
YPTB1757	PF05489	Phage Tail Protein X
YPTB1758	PF05926	YPTB1758
YPTB1759	PF05944	YPTB1759
YPTB1760	PF05125	YPTB1760
YPTB1761	PF05929	YPTB1761
YPTB1762	PF03237	Terminase-like family
YPTB1762	PF06056	Putative ATPase subunit of terminase (gpP-like)
YPTB1762	PF17289	YPTB1762
YPTB1763	PF03237	Terminase-like family
YPTB1764	PF04860	Phage portal protein
YPTB1766	PF05840	YPTB1766
YPTB1767	PF10809	YPTB1767
YPTB1769	PF06892	YPTB1769
YPTB1771	PF07022	Bacteriophage CI repressor helix-turn-helix domain
YPTB1771	PF16452	YPTB1771
YPTB1772	PF13175	AAA ATPase domain
YPTB1773	PF14491	YPTB1773
YPTB1774	PF00589	Phage integrase family
YPTB1775	PF13271	YPTB1775
YPTB1776	PF00589	Phage integrase family
YPTB1783	PF09588	YqaJ-like viral recombinase domain
YPTB1784	PF03837	YPTB1784
YPTB1786	PF11672	YPTB1786
YPTB1787	PF13619	YPTB1787
YPTB1789	PF13240	YPTB1789
YPTB1790	PF00717	Peptidase S24-like
YPTB1790	PF01381	Helix-turn-helix
YPTB1795	PF04381	Putative exonuclease, RdgC
YPTB1795	PF09397	Ftsk gamma domain
YPTB1797	PF01555	DNA methylase
YPTB1798	PF05869	YPTB1798
YPTB1799	PF00145	C-5 cytosine-specific DNA methylase
YPTB1800	PF07105	YPTB1800
YPTB1802	PF08774	VRR-NUC domain
YPTB1804	PF04971	YPTB1804
YPTB1805	PF00959	Phage lysozyme
YPTB1807	PF11195	YPTB1807
YPTB1808	PF00665	Integrase core domain
YPTB1808	PF02796	Helix-turn-helix domain of resolvase
YPTB1809	PF01695	IstB-like ATP binding protein
YPTB1814	PF13252	YPTB1814
YPTB1819	PF08400	YPTB1819
YPTB1820	PF02413	YPTB1820
YPTB1821	PF07377	Protein of unknown function (DUF1493)
YPTB1824	PF09327	YPTB1824
YPTB1834	PF04606	YPTB1834
YPTB1835	PF05954	Phage late control gene D protein (GPD)
YPTB1836	PF06995	YPTB1836
YPTB1837	PF10145	YPTB1837
YPTB1838	PF06528	YPTB1838
YPTB1839	PF10109	YPTB1839
YPTB1840	PF04985	YPTB1840
YPTB1841	PF04984	Phage tail sheath protein
YPTB1841	PF17482	YPTB1841
YPTB1843	PF12571	YPTB1843
YPTB1844	PF09684	YPTB1844
YPTB1845	PF04865	YPTB1845
YPTB1846	PF04965	Gene 25-like lysozyme
YPTB1847	PF04717	Phage-related baseplate assembly protein
YPTB1849	PF05069	YPTB1849
YPTB1850	PF06891	YPTB1850
YPTB1852	PF13539	D-alanyl-D-alanine carboxypeptidase
YPTB1853	PF05106	YPTB1853
YPTB1854	PF05489	Phage Tail Protein X
YPTB1855	PF05926	YPTB1855
YPTB1856	PF05944	YPTB1856
YPTB1857	PF05125	YPTB1857
YPTB1858	PF05929	YPTB1858
YPTB1859	PF03237	Terminase-like family
YPTB1859	PF06056	Putative ATPase subunit of terminase (gpP-like)
YPTB1859	PF17289	YPTB1859
YPTB1860	PF04860	Phage portal protein
YPTB1862	PF05840	YPTB1862
YPTB1863	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YPTB1864	PF00929	Exonuclease
YPTB1870	PF13560	Helix-turn-helix domain
YPTB1871	PF13250	YPTB1871
YPTB1871	PF13455	YPTB1871
YPTB1875	PF00589	Phage integrase family
YPTB1881	PF05638	Protein of unknown function (DUF796)
YPTB1882	PF00665	Integrase core domain
YPTB1882	PF13565	YPTB1882
YPTB1883	PF01527	Transposase
YPTB1884	PF07690	Major Facilitator Superfamily
YPTB1885	PF00899	ThiF family
YPTB1885	PF13489	Methyltransferase domain
YPTB1886	PF13649	Methyltransferase domain
YPTB1887	PF08892	YPTB1887
YPTB1888	PF08241	Methyltransferase domain
YPTB1889	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
YPTB1889	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPTB1890	PF13302	Acetyltransferase (GNAT) domain
YPTB1891	PF01527	Transposase
YPTB1892	PF00665	Integrase core domain
YPTB1892	PF13565	YPTB1892
YPTB1896	PF10908	YPTB1896
YPTB1899	PF04965	Gene 25-like lysozyme
YPTB1900	PF04717	Phage-related baseplate assembly protein
YPTB1901	PF04365	Protein of unknown function (DUF497)
YPTB1902	PF14384	YPTB1902
YPTB1905	PF00872	YPTB1905
YPTB1910	PF00392	Bacterial regulatory proteins, gntR family
YPTB1910	PF07702	UTRA domain
YPTB1912	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB1913	PF01547	Bacterial extracellular solute-binding protein
YPTB1914	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1915	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB1916	PF00005	ABC transporter
YPTB1916	PF08402	TOBE domain
YPTB1917	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB1917	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB1918	PF00419	Fimbrial protein
YPTB1919	PF00577	Outer membrane usher protein
YPTB1919	PF13953	PapC C-terminal domain
YPTB1919	PF13954	PapC N-terminal domain
YPTB1920	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB1920	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB1921	PF00419	Fimbrial protein
YPTB1922	PF00072	Response regulator receiver domain
YPTB1922	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB1922	PF00512	His Kinase A (phospho-acceptor) domain
YPTB1922	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB1923	PF00072	Response regulator receiver domain
YPTB1923	PF00196	Bacterial regulatory proteins, luxR family
YPTB1924	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
YPTB1924	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
YPTB1925	PF01575	MaoC like domain
YPTB1926	PF03328	HpcH/HpaI aldolase/citrate lyase family
YPTB1927	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB1927	PF03466	LysR substrate binding domain
YPTB1930	PF07690	Major Facilitator Superfamily
YPTB1931	PF04909	Amidohydrolase
YPTB1932	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB1932	PF03466	LysR substrate binding domain
YPTB1933	PF02508	YPTB1933
YPTB1934	PF00155	Aminotransferase class I and II
YPTB1935	PF00324	Amino acid permease
YPTB1936	PF00455	YPTB1936
YPTB1936	PF08220	DeoR-like helix-turn-helix domain
YPTB1937	PF04960	Glutaminase
YPTB1938	PF07690	Major Facilitator Superfamily
YPTB1939	PF03239	YPTB1939
YPTB1940	PF10634	Fe2+ transport protein
YPTB1941	PF04945	YHS domain
YPTB1941	PF10080	YPTB1941
YPTB1942	PF02687	YPTB1942
YPTB1943	PF02687	YPTB1943
YPTB1943	PF12704	MacB-like periplasmic core domain
YPTB1944	PF00005	ABC transporter
YPTB1945	PF00578	AhpC/TSA family
YPTB1946	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
YPTB1947	PF03848	Tellurite resistance protein TehB
YPTB1947	PF09313	Domain of unknown function (DUF1971)
YPTB1948	PF00557	Metallopeptidase family M24
YPTB1948	PF01321	Creatinase/Prolidase N-terminal domain
YPTB1950	PF01522	Polysaccharide deacetylase
YPTB1950	PF14883	Hypothetical glycosyl hydrolase family 13
YPTB1951	PF00535	Glycosyl transferase family 2
YPTB1952	PF13994	YPTB1952
YPTB1953	PF13302	Acetyltransferase (GNAT) domain
YPTB1955	PF02562	PhoH-like protein
YPTB1956	PF01699	Sodium/calcium exchanger protein
YPTB1957	PF00672	HAMP domain
YPTB1957	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB1957	PF07730	Histidine kinase
YPTB1957	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
YPTB1958	PF00155	Aminotransferase class I and II
YPTB1958	PF00392	Bacterial regulatory proteins, gntR family
YPTB1959	PF00202	Aminotransferase class-III
YPTB1960	PF04958	Arginine N-succinyltransferase beta subunit
YPTB1961	PF00171	Aldehyde dehydrogenase family
YPTB1962	PF04996	Succinylarginine dihydrolase
YPTB1963	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
YPTB1964	PF00267	Gram-negative porin
YPTB1965	PF05013	N-formylglutamate amidohydrolase
YPTB1966	PF01979	Amidohydrolase family
YPTB1967	PF00392	Bacterial regulatory proteins, gntR family
YPTB1967	PF07702	UTRA domain
YPTB1968	PF01979	Amidohydrolase family
YPTB1969	PF05962	HutD
YPTB1970	PF00425	chorismate binding enzyme
YPTB1971	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YPTB1971	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YPTB1972	PF01370	NAD dependent epimerase/dehydratase family
YPTB1973	PF00753	Metallo-beta-lactamase superfamily
YPTB1975	PF01370	NAD dependent epimerase/dehydratase family
YPTB1976	PF13506	Glycosyl transferase family 21
YPTB1978	PF04101	Glycosyltransferase family 28 C-terminal domain
YPTB1981	PF07661	YPTB1981
YPTB1981	PF08238	Sel1 repeat
YPTB1982	PF13226	YPTB1982
YPTB1983	PF02502	Ribose/Galactose Isomerase
YPTB1983	PF12408	Ribose-5-phosphate isomerase
YPTB1984	PF08242	Methyltransferase domain
YPTB1985	PF00106	short chain dehydrogenase
YPTB1988	PF13646	HEAT repeats
YPTB1989	PF12697	Alpha/beta hydrolase family
YPTB1990	PF07883	Cupin domain
YPTB1991	PF02627	Carboxymuconolactone decarboxylase family
YPTB1992	PF00512	His Kinase A (phospho-acceptor) domain
YPTB1992	PF00672	HAMP domain
YPTB1992	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB1993	PF00072	Response regulator receiver domain
YPTB1993	PF00486	Transcriptional regulatory protein, C terminal
YPTB1994	PF01738	Dienelactone hydrolase family
YPTB1995	PF12682	Flavodoxin
YPTB1996	PF14358	YPTB1996
YPTB1997	PF13316	YPTB1997
YPTB1998	PF01926	50S ribosome-binding GTPase
YPTB1998	PF06071	Protein of unknown function (DUF933)
YPTB1999	PF01195	Peptidyl-tRNA hydrolase
YPTB2000	PF10762	YPTB2000
YPTB2001	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
YPTB2001	PF14572	Phosphoribosyl synthetase-associated domain
YPTB2002	PF00288	GHMP kinases N terminal domain
YPTB2002	PF08544	GHMP kinases C terminal
YPTB2003	PF03550	Outer membrane lipoprotein LolB
YPTB2004	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
YPTB2004	PF01488	Shikimate / quinate 5-dehydrogenase
YPTB2004	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
YPTB2005	PF00472	RF-1 domain
YPTB2005	PF03462	PCRF domain
YPTB2006	PF13847	Methyltransferase domain
YPTB2007	PF04247	YPTB2007
YPTB2008	PF13369	YPTB2008
YPTB2008	PF13371	Tetratricopeptide repeat
YPTB2009	PF00793	DAHP synthetase I family
YPTB2010	PF01797	Transposase IS200 like
YPTB2011	PF00916	YPTB2011
YPTB2011	PF01740	STAS domain
YPTB2012	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPTB2013	PF13416	Bacterial extracellular solute-binding protein
YPTB2014	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2015	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2016	PF00005	ABC transporter
YPTB2017	PF03009	Glycerophosphoryl diester phosphodiesterase family
YPTB2018	PF00480	ROK family
YPTB2018	PF13412	Winged helix-turn-helix DNA-binding
YPTB2019	PF02811	PHP domain
YPTB2020	PF02613	Nitrate reductase delta subunit
YPTB2021	PF07273	Protein of unknown function (DUF1439)
YPTB2022	PF07690	Major Facilitator Superfamily
YPTB2023	PF13302	Acetyltransferase (GNAT) domain
YPTB2024	PF04337	Protein of unknown function, DUF480
YPTB2025	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB2026	PF03023	YPTB2026
YPTB2027	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPTB2027	PF08479	POTRA domain, ShlB-type
YPTB2027	PF17287	YPTB2027
YPTB2028	PF05860	haemagglutination activity domain
YPTB2028	PF13332	YPTB2028
YPTB2029	PF00750	tRNA synthetases class I (R)
YPTB2029	PF03485	Arginyl tRNA synthetase N terminal domain
YPTB2029	PF05746	DALR anticodon binding domain
YPTB2030	PF06185	YecM protein
YPTB2031	PF03932	CutC family
YPTB2032	PF08003	Protein of unknown function (DUF1698)
YPTB2033	PF13649	Methyltransferase domain
YPTB2034	PF01124	MAPEG family
YPTB2035	PF01904	Protein of unknown function DUF72
YPTB2036	PF00152	tRNA synthetases class II (D, K and N)
YPTB2036	PF01336	OB-fold nucleic acid binding domain
YPTB2036	PF02938	GAD domain
YPTB2037	PF00293	NUDIX domain
YPTB2038	PF01709	Transcriptional regulator
YPTB2039	PF02075	Crossover junction endodeoxyribonuclease RuvC
YPTB2040	PF01330	RuvA N terminal domain
YPTB2040	PF07499	RuvA, C-terminal domain
YPTB2040	PF14520	Helix-hairpin-helix domain
YPTB2041	PF05491	Holliday junction DNA helicase ruvB C-terminus
YPTB2041	PF05496	Holliday junction DNA helicase ruvB N-terminus
YPTB2042	PF00950	YPTB2042
YPTB2043	PF00005	ABC transporter
YPTB2044	PF01297	Periplasmic solute binding protein family
YPTB2045	PF01551	Peptidase family M23
YPTB2045	PF04225	Opacity-associated protein A LysM-like domain
YPTB2045	PF08525	YPTB2045
YPTB2046	PF03279	YPTB2046
YPTB2047	PF00224	Pyruvate kinase, barrel domain
YPTB2047	PF02887	Pyruvate kinase, alpha/beta domain
YPTB2048	PF01380	SIS domain
YPTB2048	PF01418	Helix-turn-helix domain, rpiR family
YPTB2049	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
YPTB2049	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
YPTB2050	PF01081	KDPG and KHG aldolase
YPTB2051	PF00893	Small Multidrug Resistance protein
YPTB2052	PF00893	Small Multidrug Resistance protein
YPTB2053	PF01042	Endoribonuclease L-PSP
YPTB2054	PF06733	DEAD_2
YPTB2054	PF13307	Helicase C-terminal domain
YPTB2055	PF00814	Glycoprotease family
YPTB2056	PF03843	YPTB2056
YPTB2057	PF00501	AMP-binding enzyme
YPTB2057	PF13193	AMP-binding enzyme C-terminal domain
YPTB2058	PF00570	HRDC domain
YPTB2058	PF01612	3'-5' exonuclease
YPTB2059	PF03776	Septum formation topological specificity factor MinE
YPTB2060	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
YPTB2061	PF03775	Septum formation inhibitor MinC, C-terminal domain
YPTB2061	PF05209	Septum formation inhibitor MinC, N-terminal domain
YPTB2062	PF05166	YcgL domain
YPTB2063	PF13406	Transglycosylase SLT domain
YPTB2064	PF01557	Fumarylacetoacetate (FAA) hydrolase family
YPTB2065	PF03692	YPTB2065
YPTB2066	PF07690	Major Facilitator Superfamily
YPTB2067	PF00266	Aminotransferase class-V
YPTB2070	PF02600	Disulfide bond formation protein DsbB
YPTB2071	PF06450	YPTB2071
YPTB2072	PF00392	Bacterial regulatory proteins, gntR family
YPTB2072	PF07840	FadR C-terminal domain
YPTB2073	PF04293	YPTB2073
YPTB2074	PF01266	FAD dependent oxidoreductase
YPTB2075	PF07690	Major Facilitator Superfamily
YPTB2076	PF02678	Pirin
YPTB2076	PF05726	Pirin C-terminal cupin domain
YPTB2077	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2077	PF03466	LysR substrate binding domain
YPTB2078	PF00892	EamA-like transporter family
YPTB2079	PF04285	YPTB2079
YPTB2080	PF06798	YPTB2080
YPTB2080	PF08298	PrkA AAA domain
YPTB2081	PF06629	YPTB2081
YPTB2082	PF01263	Aldose 1-epimerase
YPTB2083	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPTB2083	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YPTB2084	PF01641	SelR domain
YPTB2085	PF07023	YPTB2085
YPTB2086	PF00857	Isochorismatase family
YPTB2087	PF00710	Asparaginase
YPTB2088	PF01343	Peptidase family S49
YPTB2089	PF00881	Nitroreductase family
YPTB2090	PF00586	AIR synthase related protein, N-terminal domain
YPTB2090	PF02769	AIR synthase related protein, C-terminal domain
YPTB2091	PF01131	DNA topoisomerase
YPTB2091	PF01751	Toprim domain
YPTB2092	PF07383	YPTB2092
YPTB2093	PF00293	NUDIX domain
YPTB2094	PF03372	Endonuclease/Exonuclease/phosphatase family
YPTB2095	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2096	PF00872	YPTB2096
YPTB2097	PF00551	Formyl transferase
YPTB2097	PF01842	ACT domain
YPTB2098	PF02810	SEC-C motif
YPTB2099	PF00072	Response regulator receiver domain
YPTB2100	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
YPTB2100	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
YPTB2100	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
YPTB2101	PF00816	H-NS histone family
YPTB2102	PF00265	Thymidine kinase
YPTB2103	PF00171	Aldehyde dehydrogenase family
YPTB2103	PF00465	Iron-containing alcohol dehydrogenase
YPTB2104	PF01914	YPTB2104
YPTB2105	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB2106	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2107	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2107	PF12911	YPTB2107
YPTB2108	PF00005	ABC transporter
YPTB2108	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPTB2109	PF00005	ABC transporter
YPTB2109	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPTB2110	PF04269	Protein of unknown function, DUF440
YPTB2111	PF13091	PLD-like domain
YPTB2111	PF13396	YPTB2111
YPTB2113	PF13505	Outer membrane protein beta-barrel domain
YPTB2115	PF13453	YPTB2115
YPTB2116	PF03795	YCII-related domain
YPTB2117	PF03544	Gram-negative bacterial TonB protein C-terminal
YPTB2117	PF16031	YPTB2117
YPTB2118	PF03061	Thioesterase superfamily
YPTB2119	PF04279	YPTB2119
YPTB2120	PF00916	YPTB2120
YPTB2120	PF01740	STAS domain
YPTB2121	PF06790	YPTB2121
YPTB2123	PF03922	OmpW family
YPTB2124	PF04972	BON domain
YPTB2125	PF00290	Tryptophan synthase alpha chain
YPTB2126	PF00291	Pyridoxal-phosphate dependent enzyme
YPTB2127	PF00218	Indole-3-glycerol phosphate synthase
YPTB2127	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YPTB2128	PF00591	Glycosyl transferase family, a/b domain
YPTB2128	PF02885	Glycosyl transferase family, helical bundle domain
YPTB2129	PF00117	Glutamine amidotransferase class-I
YPTB2130	PF00425	chorismate binding enzyme
YPTB2130	PF04715	Anthranilate synthase component I, N terminal region
YPTB2131	PF08255	YPTB2131
YPTB2133	PF02811	PHP domain
YPTB2134	PF01300	Telomere recombination
YPTB2135	PF00849	RNA pseudouridylate synthase
YPTB2135	PF01479	S4 domain
YPTB2136	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YPTB2136	PF12557	Cob(I)alamin adenosyltransferase N terminal
YPTB2137	PF00106	short chain dehydrogenase
YPTB2138	PF01343	Peptidase family S49
YPTB2138	PF08496	YPTB2138
YPTB2139	PF10692	Protein of unknown function (DUF2498)
YPTB2140	PF01131	DNA topoisomerase
YPTB2140	PF01396	YPTB2140
YPTB2140	PF01751	Toprim domain
YPTB2140	PF08272	Topoisomerase I zinc-ribbon-like
YPTB2141	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2141	PF03466	LysR substrate binding domain
YPTB2143	PF00330	Aconitase family (aconitate hydratase)
YPTB2143	PF00694	Aconitase C-terminal domain
YPTB2144	PF00925	GTP cyclohydrolase II
YPTB2145	PF01569	PAP2 superfamily
YPTB2146	PF06305	YPTB2146
YPTB2147	PF13176	Tetratricopeptide repeat
YPTB2147	PF13432	Tetratricopeptide repeat
YPTB2149	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
YPTB2150	PF01253	Translation initiation factor SUI1
YPTB2151	PF05433	YPTB2151
YPTB2152	PF00596	Class II Aldolase and Adducin N-terminal domain
YPTB2153	PF09932	YPTB2153
YPTB2154	PF00923	Transaldolase
YPTB2155	PF04328	YPTB2155
YPTB2156	PF02554	YPTB2156
YPTB2156	PF13722	YPTB2156
YPTB2157	PF00575	S1 RNA binding domain
YPTB2157	PF00773	RNB domain
YPTB2157	PF08206	Ribonuclease B OB domain
YPTB2158	PF07690	Major Facilitator Superfamily
YPTB2159	PF01370	NAD dependent epimerase/dehydratase family
YPTB2160	PF00633	Helix-hairpin-helix motif
YPTB2160	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPTB2160	PF10576	Iron-sulfur binding domain of endonuclease III
YPTB2161	PF02508	YPTB2161
YPTB2162	PF04205	FMN-binding domain
YPTB2163	PF03116	YPTB2163
YPTB2164	PF06445	GyrI-like small molecule binding domain
YPTB2164	PF12833	Helix-turn-helix domain
YPTB2165	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YPTB2165	PF10531	SLBB domain
YPTB2165	PF13237	4Fe-4S dicluster domain
YPTB2165	PF13375	RnfC Barrel sandwich hybrid domain
YPTB2166	PF04060	Putative Fe-S cluster
YPTB2166	PF14697	4Fe-4S dicluster domain
YPTB2167	PF02508	YPTB2167
YPTB2168	PF10754	YPTB2168
YPTB2169	PF00005	ABC transporter
YPTB2169	PF00664	ABC transporter transmembrane region
YPTB2170	PF13437	HlyD family secretion protein
YPTB2170	PF13533	Biotin-lipoyl like
YPTB2171	PF00005	ABC transporter
YPTB2171	PF00664	ABC transporter transmembrane region
YPTB2171	PF03412	Peptidase C39 family
YPTB2172	PF02610	L-arabinose isomerase
YPTB2172	PF11762	L-arabinose isomerase C-terminal domain
YPTB2173	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB2173	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB2174	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPTB2175	PF00005	ABC transporter
YPTB2176	PF02653	YPTB2176
YPTB2177	PF02311	AraC-like ligand binding domain
YPTB2177	PF12833	Helix-turn-helix domain
YPTB2178	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB2178	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
YPTB2179	PF13593	SBF-like CPA transporter family (DUF4137)
YPTB2180	PF00962	Adenosine/AMP deaminase
YPTB2183	PF00392	Bacterial regulatory proteins, gntR family
YPTB2183	PF07702	UTRA domain
YPTB2184	PF06097	YPTB2184
YPTB2185	PF01238	Phosphomannose isomerase type I
YPTB2186	PF00206	Lyase
YPTB2186	PF10415	Fumarase C C-terminus
YPTB2187	PF05472	DNA replication terminus site-binding protein (Ter protein)
YPTB2188	PF07690	Major Facilitator Superfamily
YPTB2189	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2189	PF03466	LysR substrate binding domain
YPTB2190	PF00480	ROK family
YPTB2191	PF13500	AAA domain
YPTB2192	PF00654	Voltage gated chloride channel
YPTB2193	PF06649	YPTB2193
YPTB2194	PF06932	YPTB2194
YPTB2195	PF00106	short chain dehydrogenase
YPTB2196	PF00158	Sigma-54 interaction domain
YPTB2196	PF02954	Bacterial regulatory protein, Fis family
YPTB2197	PF00171	Aldehyde dehydrogenase family
YPTB2199	PF00892	EamA-like transporter family
YPTB2200	PF00155	Aminotransferase class I and II
YPTB2204	PF13407	Periplasmic binding protein domain
YPTB2205	PF02653	YPTB2205
YPTB2206	PF00005	ABC transporter
YPTB2207	PF10054	Predicted periplasmic lipoprotein (DUF2291)
YPTB2208	PF13379	NMT1-like family
YPTB2209	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2210	PF00005	ABC transporter
YPTB2211	PF01048	Phosphorylase superfamily
YPTB2211	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
YPTB2213	PF07520	YPTB2213
YPTB2214	PF10139	YPTB2214
YPTB2215	PF07313	Protein of unknown function (DUF1460)
YPTB2216	PF00205	Thiamine pyrophosphate enzyme, central domain
YPTB2216	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPTB2216	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPTB2217	PF13710	ACT domain
YPTB2218	PF13419	Haloacid dehalogenase-like hydrolase
YPTB2219	PF13208	YPTB2219
YPTB2219	PF15615	YPTB2219
YPTB2220	PF00245	Alkaline phosphatase
YPTB2221	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
YPTB2221	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
YPTB2222	PF00027	Cyclic nucleotide-binding domain
YPTB2222	PF13545	Crp-like helix-turn-helix domain
YPTB2223	PF00582	Universal stress protein family
YPTB2224	PF02233	NAD(P) transhydrogenase beta subunit
YPTB2225	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
YPTB2225	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
YPTB2225	PF12769	Domain of unknown function (DUF3814)
YPTB2227	PF07338	Protein of unknown function (DUF1471)
YPTB2228	PF13520	Amino acid permease
YPTB2230	PF00072	Response regulator receiver domain
YPTB2230	PF00486	Transcriptional regulatory protein, C terminal
YPTB2231	PF00512	His Kinase A (phospho-acceptor) domain
YPTB2231	PF00672	HAMP domain
YPTB2231	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB2232	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
YPTB2233	PF03497	Anthrax toxin LF subunit
YPTB2234	PF04264	YceI-like domain
YPTB2235	PF01292	Prokaryotic cytochrome b561
YPTB2238	PF00089	Trypsin
YPTB2239	PF01381	Helix-turn-helix
YPTB2240	PF05973	YPTB2240
YPTB2241	PF00270	DEAD/DEAH box helicase
YPTB2241	PF00271	Helicase conserved C-terminal domain
YPTB2241	PF04408	Helicase associated domain (HA2)
YPTB2241	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
YPTB2241	PF11898	YPTB2241
YPTB2242	PF02525	Flavodoxin-like fold
YPTB2243	PF04198	Putative sugar-binding domain
YPTB2244	PF01232	Mannitol dehydrogenase Rossmann domain
YPTB2244	PF08125	Mannitol dehydrogenase C-terminal domain
YPTB2245	PF07027	YPTB2245
YPTB2246	PF13617	YPTB2246
YPTB2247	PF11739	YPTB2247
YPTB2248	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPTB2248	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPTB2249	PF03724	META domain
YPTB2250	PF03891	YPTB2250
YPTB2251	PF02308	YPTB2251
YPTB2252	PF00893	Small Multidrug Resistance protein
YPTB2253	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
YPTB2253	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
YPTB2253	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPTB2253	PF10371	Domain of unknown function
YPTB2253	PF12838	4Fe-4S dicluster domain
YPTB2253	PF17147	YPTB2253
YPTB2254	PF01171	PP-loop family
YPTB2255	PF07859	alpha/beta hydrolase fold
YPTB2256	PF13411	MerR HTH family regulatory protein
YPTB2257	PF01544	CorA-like Mg2+ transporter protein
YPTB2258	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB2259	PF00246	Zinc carboxypeptidase
YPTB2260	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YPTB2260	PF13378	Enolase C-terminal domain-like
YPTB2261	PF08534	Redoxin
YPTB2262	PF00158	Sigma-54 interaction domain
YPTB2262	PF00989	PAS fold
YPTB2263	PF09722	YPTB2263
YPTB2264	PF08808	YPTB2264
YPTB2265	PF05128	YPTB2265
YPTB2266	PF04317	YPTB2266
YPTB2267	PF09584	YPTB2267
YPTB2268	PF04024	YPTB2268
YPTB2269	PF06667	YPTB2269
YPTB2270	PF04012	YPTB2270
YPTB2271	PF00158	Sigma-54 interaction domain
YPTB2271	PF02954	Bacterial regulatory protein, Fis family
YPTB2272	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB2273	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2274	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2274	PF12911	YPTB2274
YPTB2275	PF00005	ABC transporter
YPTB2275	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPTB2276	PF00005	ABC transporter
YPTB2278	PF00854	POT family
YPTB2279	PF06930	YPTB2279
YPTB2280	PF11656	YPTB2280
YPTB2281	PF00043	Glutathione S-transferase, C-terminal domain
YPTB2281	PF02798	Glutathione S-transferase, N-terminal domain
YPTB2282	PF08543	Phosphomethylpyrimidine kinase
YPTB2283	PF00579	tRNA synthetases class I (W and Y)
YPTB2283	PF01479	S4 domain
YPTB2284	PF01243	Pyridoxamine 5'-phosphate oxidase
YPTB2284	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
YPTB2285	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
YPTB2286	PF03702	Uncharacterised protein family (UPF0075)
YPTB2287	PF05433	YPTB2287
YPTB2288	PF01047	MarR family
YPTB2289	PF00248	Aldo/keto reductase family
YPTB2290	PF06945	YPTB2290
YPTB2291	PF00884	Sulfatase
YPTB2291	PF08019	YPTB2291
YPTB2292	PF00440	Bacterial regulatory proteins, tetR family
YPTB2292	PF16925	YPTB2292
YPTB2293	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPTB2295	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YPTB2296	PF00929	Exonuclease
YPTB2297	PF00462	Glutaredoxin
YPTB2298	PF00877	NlpC/P60 family
YPTB2299	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YPTB2299	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YPTB2300	PF00356	Bacterial regulatory proteins, lacI family
YPTB2300	PF13377	Periplasmic binding protein-like domain
YPTB2301	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2301	PF03466	LysR substrate binding domain
YPTB2302	PF07690	Major Facilitator Superfamily
YPTB2303	PF02353	Mycolic acid cyclopropane synthetase
YPTB2304	PF00677	Lumazine binding domain
YPTB2305	PF01554	MatE
YPTB2306	PF00224	Pyruvate kinase, barrel domain
YPTB2306	PF02887	Pyruvate kinase, alpha/beta domain
YPTB2307	PF04728	Lipoprotein leucine-zipper
YPTB2308	PF03734	L,D-transpeptidase catalytic domain
YPTB2309	PF02657	Fe-S metabolism associated domain
YPTB2310	PF00266	Aminotransferase class-V
YPTB2311	PF01458	Uncharacterized protein family (UPF0051)
YPTB2312	PF00005	ABC transporter
YPTB2313	PF01458	Uncharacterized protein family (UPF0051)
YPTB2314	PF01521	Iron-sulphur cluster biosynthesis
YPTB2315	PF03061	Thioesterase superfamily
YPTB2316	PF01565	FAD binding domain
YPTB2316	PF02913	FAD linked oxidases, C-terminal domain
YPTB2316	PF13183	4Fe-4S dicluster domain
YPTB2317	PF01594	YPTB2317
YPTB2318	PF00391	PEP-utilising enzyme, mobile domain
YPTB2318	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
YPTB2318	PF02896	PEP-utilising enzyme, TIM barrel domain
YPTB2319	PF03618	YPTB2319
YPTB2320	PF00793	DAHP synthetase I family
YPTB2321	PF02696	YPTB2321
YPTB2322	PF03099	Biotin/lipoate A/B protein ligase family
YPTB2322	PF10437	Bacterial lipoate protein ligase C-terminus
YPTB2323	PF00877	NlpC/P60 family
YPTB2325	PF00892	EamA-like transporter family
YPTB2326	PF02366	YPTB2326
YPTB2327	PF01522	Polysaccharide deacetylase
YPTB2328	PF00551	Formyl transferase
YPTB2328	PF01370	NAD dependent epimerase/dehydratase family
YPTB2328	PF02911	Formyl transferase, C-terminal domain
YPTB2329	PF00535	Glycosyl transferase family 2
YPTB2330	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
YPTB2331	PF00005	ABC transporter
YPTB2332	PF00255	Glutathione peroxidase
YPTB2333	PF01032	FecCD transport family
YPTB2334	PF10697	YPTB2334
YPTB2335	PF00216	Bacterial DNA-binding protein
YPTB2336	PF01588	Putative tRNA binding domain
YPTB2336	PF03147	Ferredoxin-fold anticodon binding domain
YPTB2336	PF03483	B3/4 domain
YPTB2336	PF03484	tRNA synthetase B5 domain
YPTB2337	PF01409	tRNA synthetases class II core domain (F)
YPTB2337	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
YPTB2339	PF00453	Ribosomal protein L20
YPTB2340	PF01632	Ribosomal protein L35
YPTB2341	PF00707	Translation initiation factor IF-3, C-terminal domain
YPTB2341	PF05198	Translation initiation factor IF-3, N-terminal domain
YPTB2342	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPTB2342	PF02824	TGS domain
YPTB2342	PF03129	Anticodon binding domain
YPTB2342	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
YPTB2343	PF13619	YPTB2343
YPTB2345	PF01914	YPTB2345
YPTB2346	PF01464	Transglycosylase SLT domain
YPTB2347	PF01297	Periplasmic solute binding protein family
YPTB2348	PF00005	ABC transporter
YPTB2349	PF00950	YPTB2349
YPTB2350	PF00950	YPTB2350
YPTB2352	PF03881	Fructosamine kinase
YPTB2353	PF14002	YPTB2353
YPTB2354	PF13419	Haloacid dehalogenase-like hydrolase
YPTB2355	PF07883	Cupin domain
YPTB2356	PF04962	KduI/IolB family
YPTB2357	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB2358	PF06917	Periplasmic pectate lyase
YPTB2359	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2360	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2361	PF00005	ABC transporter
YPTB2362	PF01547	Bacterial extracellular solute-binding protein
YPTB2363	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YPTB2364	PF04307	YPTB2364
YPTB2365	PF00375	Sodium:dicarboxylate symporter family
YPTB2366	PF01471	Putative peptidoglycan binding domain
YPTB2366	PF01510	N-acetylmuramoyl-L-alanine amidase
YPTB2367	PF01614	Bacterial transcriptional regulator
YPTB2367	PF09339	IclR helix-turn-helix domain
YPTB2368	PF14583	Oligogalacturonate lyase
YPTB2369	PF07690	Major Facilitator Superfamily
YPTB2370	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB2370	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB2371	PF00419	Fimbrial protein
YPTB2372	PF00577	Outer membrane usher protein
YPTB2372	PF13953	PapC C-terminal domain
YPTB2372	PF13954	PapC N-terminal domain
YPTB2373	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB2373	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB2374	PF16970	YPTB2374
YPTB2375	PF01435	Peptidase family M48
YPTB2376	PF00595	PDZ domain (Also known as DHR or GLGF)
YPTB2376	PF03572	Peptidase family S41
YPTB2376	PF11818	YPTB2376
YPTB2377	PF04352	ProQ/FINO family
YPTB2377	PF17516	YPTB2377
YPTB2378	PF13185	GAF domain
YPTB2379	PF04403	YPTB2379
YPTB2380	PF02470	YPTB2380
YPTB2381	PF05229	YPTB2381
YPTB2382	PF05229	YPTB2382
YPTB2383	PF05229	YPTB2383
YPTB2385	PF00577	Outer membrane usher protein
YPTB2385	PF13953	PapC C-terminal domain
YPTB2386	PF05229	YPTB2386
YPTB2387	PF07351	YPTB2387
YPTB2388	PF04266	ASCH domain
YPTB2390	PF01734	Patatin-like phospholipase
YPTB2392	PF00842	Alanine racemase, C-terminal domain
YPTB2392	PF01168	Alanine racemase, N-terminal domain
YPTB2394	PF03895	YadA-like C-terminal region
YPTB2394	PF05658	Head domain of trimeric autotransporter adhesin
YPTB2394	PF05662	Coiled stalk of trimeric autotransporter adhesin
YPTB2395	PF01510	N-acetylmuramoyl-L-alanine amidase
YPTB2396	PF04344	Chemotaxis phosphatase, CheZ
YPTB2397	PF00072	Response regulator receiver domain
YPTB2398	PF00072	Response regulator receiver domain
YPTB2398	PF01339	CheB methylesterase
YPTB2399	PF01739	CheR methyltransferase, SAM binding domain
YPTB2399	PF03705	CheR methyltransferase, all-alpha domain
YPTB2400	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPTB2400	PF00672	HAMP domain
YPTB2400	PF02203	Tar ligand binding domain homologue
YPTB2401	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPTB2401	PF00672	HAMP domain
YPTB2401	PF02203	Tar ligand binding domain homologue
YPTB2403	PF10101	YPTB2403
YPTB2404	PF01584	CheW-like domain
YPTB2405	PF01584	CheW-like domain
YPTB2405	PF01627	Hpt domain
YPTB2405	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB2405	PF02895	Signal transducing histidine kinase, homodimeric domain
YPTB2405	PF09078	CheY binding
YPTB2406	PF00691	OmpA family
YPTB2406	PF13677	YPTB2406
YPTB2407	PF01618	YPTB2407
YPTB2409	PF05247	Flagellar transcriptional activator (FlhD)
YPTB2410	PF00122	E1-E2 ATPase
YPTB2410	PF00689	Cation transporting ATPase, C-terminus
YPTB2410	PF00690	Cation transporter/ATPase, N-terminus
YPTB2410	PF00702	haloacid dehalogenase-like hydrolase
YPTB2411	PF02308	YPTB2411
YPTB2412	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPTB2412	PF00672	HAMP domain
YPTB2412	PF02203	Tar ligand binding domain homologue
YPTB2413	PF10781	YPTB2413
YPTB2414	PF00313	'Cold-shock' DNA-binding domain
YPTB2415	PF00703	Glycosyl hydrolases family 2
YPTB2415	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
YPTB2415	PF02837	Glycosyl hydrolases family 2, sugar binding domain
YPTB2415	PF02929	Beta galactosidase small chain
YPTB2415	PF16353	YPTB2415
YPTB2416	PF00107	Zinc-binding dehydrogenase
YPTB2416	PF08240	Alcohol dehydrogenase GroES-like domain
YPTB2417	PF10777	YPTB2417
YPTB2418	PF01037	AsnC family
YPTB2418	PF13412	Winged helix-turn-helix DNA-binding
YPTB2419	PF11004	YPTB2419
YPTB2420	PF14001	YPTB2420
YPTB2421	PF00328	Histidine phosphatase superfamily (branch 2)
YPTB2422	PF01638	HxlR-like helix-turn-helix
YPTB2423	PF05368	NmrA-like family
YPTB2424	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPTB2424	PF08447	PAS fold
YPTB2426	PF00356	Bacterial regulatory proteins, lacI family
YPTB2426	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPTB2427	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPTB2428	PF00849	RNA pseudouridylate synthase
YPTB2429	PF00293	NUDIX domain
YPTB2430	PF03054	tRNA methyl transferase
YPTB2431	PF04356	Protein of unknown function (DUF489)
YPTB2432	PF00206	Lyase
YPTB2432	PF08328	Adenylosuccinate lyase C-terminal
YPTB2433	PF13505	Outer membrane protein beta-barrel domain
YPTB2434	PF00072	Response regulator receiver domain
YPTB2434	PF00486	Transcriptional regulatory protein, C terminal
YPTB2435	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB2435	PF08918	PhoQ Sensor
YPTB2436	PF08007	Cupin superfamily protein
YPTB2437	PF01546	Peptidase family M20/M25/M40
YPTB2437	PF07687	Peptidase dimerisation domain
YPTB2438	PF02146	Sir2 family
YPTB2439	PF00480	ROK family
YPTB2440	PF02687	YPTB2440
YPTB2440	PF12704	MacB-like periplasmic core domain
YPTB2441	PF00005	ABC transporter
YPTB2442	PF02687	YPTB2442
YPTB2442	PF12704	MacB-like periplasmic core domain
YPTB2443	PF00270	DEAD/DEAH box helicase
YPTB2443	PF00271	Helicase conserved C-terminal domain
YPTB2443	PF02559	CarD-like/TRCF domain
YPTB2443	PF03461	TRCF domain
YPTB2444	PF05433	YPTB2444
YPTB2447	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB2448	PF05728	Uncharacterised protein family (UPF0227)
YPTB2449	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPTB2450	PF01636	Phosphotransferase enzyme family
YPTB2451	PF13036	Protein of unknown function (DUF3897)
YPTB2452	PF07233	Protein of unknown function (DUF1425)
YPTB2453	PF01230	HIT domain
YPTB2454	PF08501	Shikimate dehydrogenase substrate binding domain
YPTB2455	PF05840	YPTB2455
YPTB2459	PF14130	YPTB2459
YPTB2462	PF10908	YPTB2462
YPTB2463	PF00367	phosphotransferase system, EIIB
YPTB2463	PF02378	Phosphotransferase system, EIIC
YPTB2464	PF01026	TatD related DNase
YPTB2465	PF09115	DNA polymerase III, delta subunit, C terminal
YPTB2465	PF13177	DNA polymerase III, delta subunit
YPTB2466	PF02223	Thymidylate kinase
YPTB2467	PF02618	YceG-like family
YPTB2468	PF01063	Aminotransferase class IV
YPTB2469	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPTB2469	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPTB2470	PF00550	Phosphopantetheine attachment site
YPTB2471	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB2472	PF00698	Acyl transferase domain
YPTB2473	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
YPTB2473	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YPTB2474	PF02504	Fatty acid synthesis protein
YPTB2475	PF01783	Ribosomal L32p protein family
YPTB2476	PF02620	YPTB2476
YPTB2477	PF02545	Maf-like protein
YPTB2478	PF00849	RNA pseudouridylate synthase
YPTB2478	PF01479	S4 domain
YPTB2479	PF00575	S1 RNA binding domain
YPTB2479	PF10150	Ribonuclease E/G family
YPTB2479	PF12111	Polyribonucleotide phosphorylase C terminal
YPTB2480	PF13333	YPTB2480
YPTB2481	PF03992	Antibiotic biosynthesis monooxygenase
YPTB2482	PF01979	Amidohydrolase family
YPTB2483	PF06183	DinI-like family
YPTB2484	PF13991	YPTB2484
YPTB2485	PF01266	FAD dependent oxidoreductase
YPTB2486	PF00196	Bacterial regulatory proteins, luxR family
YPTB2487	PF01594	YPTB2487
YPTB2488	PF00581	Rhodanese-like domain
YPTB2488	PF12368	YPTB2488
YPTB2490	PF03279	YPTB2490
YPTB2491	PF00854	POT family
YPTB2492	PF07119	YPTB2492
YPTB2493	PF00535	Glycosyl transferase family 2
YPTB2494	PF04349	Periplasmic glucan biosynthesis protein, MdoG
YPTB2497	PF00999	Sodium/hydrogen exchanger family
YPTB2497	PF02080	TrkA-C domain
YPTB2497	PF03471	Transporter associated domain
YPTB2498	PF00892	EamA-like transporter family
YPTB2499	PF00765	Autoinducer synthetase
YPTB2500	PF00196	Bacterial regulatory proteins, luxR family
YPTB2500	PF03472	Autoinducer binding domain
YPTB2501	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2501	PF03466	LysR substrate binding domain
YPTB2502	PF00083	Sugar (and other) transporter
YPTB2503	PF08714	Formaldehyde-activating enzyme (Fae)
YPTB2504	PF00248	Aldo/keto reductase family
YPTB2505	PF09618	CRISPR-associated protein (Cas_Csy4)
YPTB2506	PF09615	YPTB2506
YPTB2507	PF09614	YPTB2507
YPTB2508	PF09611	YPTB2508
YPTB2510	PF01867	CRISPR associated protein Cas1
YPTB2511	PF00924	Mechanosensitive ion channel
YPTB2514	PF08950	Protein of unknown function (DUF1861)
YPTB2515	PF04041	Domain of unknown function (DUF377)
YPTB2516	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2517	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2518	PF13416	Bacterial extracellular solute-binding protein
YPTB2519	PF00356	Bacterial regulatory proteins, lacI family
YPTB2519	PF13377	Periplasmic binding protein-like domain
YPTB2520	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPTB2520	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPTB2520	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPTB2520	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPTB2521	PF00005	ABC transporter
YPTB2521	PF08402	TOBE domain
YPTB2526	PF10004	YPTB2526
YPTB2527	PF04829	YPTB2527
YPTB2527	PF05594	YPTB2527
YPTB2527	PF05860	haemagglutination activity domain
YPTB2527	PF13018	YPTB2527
YPTB2527	PF13332	YPTB2527
YPTB2528	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPTB2528	PF08479	POTRA domain, ShlB-type
YPTB2528	PF17287	YPTB2528
YPTB2529	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPTB2529	PF00175	Oxidoreductase NAD-binding domain
YPTB2529	PF00970	Oxidoreductase FAD-binding domain
YPTB2530	PF00355	Rieske [2Fe-2S] domain
YPTB2530	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
YPTB2531	PF02028	BCCT family transporter
YPTB2532	PF00180	Isocitrate/isopropylmalate dehydrogenase
YPTB2533	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2533	PF03466	LysR substrate binding domain
YPTB2534	PF00356	Bacterial regulatory proteins, lacI family
YPTB2534	PF13407	Periplasmic binding protein domain
YPTB2535	PF02653	YPTB2535
YPTB2536	PF00005	ABC transporter
YPTB2537	PF13407	Periplasmic binding protein domain
YPTB2538	PF00107	Zinc-binding dehydrogenase
YPTB2538	PF08240	Alcohol dehydrogenase GroES-like domain
YPTB2539	PF16809	YPTB2539
YPTB2540	PF16809	YPTB2540
YPTB2541	PF01545	Cation efflux family
YPTB2542	PF13505	Outer membrane protein beta-barrel domain
YPTB2543	PF00892	EamA-like transporter family
YPTB2544	PF00583	Acetyltransferase (GNAT) family
YPTB2545	PF13649	Methyltransferase domain
YPTB2546	PF00210	Ferritin-like domain
YPTB2547	PF02698	DUF218 domain
YPTB2548	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB2549	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2550	PF00005	ABC transporter
YPTB2551	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPTB2551	PF08448	PAS fold
YPTB2551	PF13426	PAS domain
YPTB2553	PF05971	Protein of unknown function (DUF890)
YPTB2554	PF07338	Protein of unknown function (DUF1471)
YPTB2555	PF00591	Glycosyl transferase family, a/b domain
YPTB2555	PF02885	Glycosyl transferase family, helical bundle domain
YPTB2556	PF00501	AMP-binding enzyme
YPTB2557	PF13378	Enolase C-terminal domain-like
YPTB2558	PF00378	Enoyl-CoA hydratase/isomerase family
YPTB2559	PF12697	Alpha/beta hydrolase family
YPTB2560	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YPTB2560	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
YPTB2560	PF16582	YPTB2560
YPTB2561	PF00425	chorismate binding enzyme
YPTB2563	PF05957	YPTB2563
YPTB2565	PF00920	Dehydratase family
YPTB2566	PF03928	Domain of unknown function (DUF336)
YPTB2567	PF07690	Major Facilitator Superfamily
YPTB2568	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPTB2568	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPTB2569	PF00356	Bacterial regulatory proteins, lacI family
YPTB2569	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPTB2570	PF02638	YPTB2570
YPTB2571	PF00106	short chain dehydrogenase
YPTB2572	PF01202	Shikimate kinase
YPTB2573	PF04074	Domain of unknown function (DUF386)
YPTB2575	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPTB2576	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPTB2577	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
YPTB2577	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
YPTB2578	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YPTB2579	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YPTB2580	PF12838	4Fe-4S dicluster domain
YPTB2581	PF00146	NADH dehydrogenase
YPTB2582	PF00384	Molybdopterin oxidoreductase
YPTB2582	PF01568	Molydopterin dinucleotide binding domain
YPTB2582	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPTB2582	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YPTB2582	PF13510	2Fe-2S iron-sulfur cluster binding domain
YPTB2583	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
YPTB2583	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YPTB2584	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
YPTB2585	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YPTB2585	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YPTB2586	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
YPTB2587	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YPTB2588	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2588	PF03466	LysR substrate binding domain
YPTB2589	PF00155	Aminotransferase class I and II
YPTB2590	PF13023	HD domain
YPTB2592	PF02080	TrkA-C domain
YPTB2592	PF03600	Citrate transporter
YPTB2593	PF13419	Haloacid dehalogenase-like hydrolase
YPTB2594	PF03887	YfbU domain
YPTB2595	PF04217	YPTB2595
YPTB2597	PF00871	Acetokinase family
YPTB2598	PF01515	Phosphate acetyl/butaryl transferase
YPTB2598	PF07085	DRTGG domain
YPTB2598	PF13500	AAA domain
YPTB2599	PF00356	Bacterial regulatory proteins, lacI family
YPTB2599	PF13377	Periplasmic binding protein-like domain
YPTB2600	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPTB2601	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPTB2602	PF03611	YPTB2602
YPTB2603	PF00293	NUDIX domain
YPTB2604	PF12850	Calcineurin-like phosphoesterase superfamily domain
YPTB2605	PF00563	EAL domain
YPTB2606	PF01370	NAD dependent epimerase/dehydratase family
YPTB2606	PF08338	Domain of unknown function (DUF1731)
YPTB2607	PF00005	ABC transporter
YPTB2608	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2609	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2610	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB2611	PF02441	Flavoprotein
YPTB2612	PF00156	Phosphoribosyl transferase domain
YPTB2612	PF13522	Glutamine amidotransferase domain
YPTB2613	PF02674	YPTB2613
YPTB2614	PF05036	Sporulation related domain
YPTB2615	PF02875	Mur ligase family, glutamate ligase domain
YPTB2615	PF08245	Mur ligase middle domain
YPTB2616	PF01039	Carboxyl transferase domain
YPTB2617	PF09335	YPTB2617
YPTB2618	PF01416	tRNA pseudouridine synthase
YPTB2619	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPTB2619	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPTB2620	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPTB2620	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPTB2620	PF11890	Domain of unknown function (DUF3410)
YPTB2621	PF02311	AraC-like ligand binding domain
YPTB2621	PF12833	Helix-turn-helix domain
YPTB2622	PF00892	EamA-like transporter family
YPTB2624	PF00419	Fimbrial protein
YPTB2625	PF01177	Asp/Glu/Hydantoin racemase
YPTB2626	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPTB2626	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPTB2627	PF01266	FAD dependent oxidoreductase
YPTB2627	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
YPTB2628	PF08891	YPTB2628
YPTB2629	PF04315	YPTB2629
YPTB2630	PF01925	YPTB2630
YPTB2631	PF03411	Penicillin-insensitive murein endopeptidase
YPTB2632	PF01264	Chorismate synthase
YPTB2633	PF05175	Methyltransferase small domain
YPTB2634	PF01713	Smr domain
YPTB2635	PF00300	Histidine phosphatase superfamily (branch 1)
YPTB2636	PF00378	Enoyl-CoA hydratase/isomerase family
YPTB2636	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
YPTB2636	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YPTB2637	PF00108	Thiolase, N-terminal domain
YPTB2637	PF02803	Thiolase, C-terminal domain
YPTB2638	PF04175	Protein of unknown function (DUF406)
YPTB2639	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
YPTB2640	PF04333	YPTB2640
YPTB2641	PF14559	Tetratricopeptide repeat
YPTB2642	PF03918	Cytochrome C biogenesis protein
YPTB2643	PF08534	Redoxin
YPTB2644	PF01578	YPTB2644
YPTB2644	PF16327	YPTB2644
YPTB2645	PF03100	CcmE
YPTB2646	PF04995	YPTB2646
YPTB2647	PF01578	YPTB2647
YPTB2648	PF03379	YPTB2648
YPTB2649	PF00005	ABC transporter
YPTB2651	PF04011	LemA family
YPTB2652	PF09972	YPTB2652
YPTB2653	PF03831	PhnA protein
YPTB2653	PF08274	PhnA Zinc-Ribbon
YPTB2655	PF04965	Gene 25-like lysozyme
YPTB2656	PF07024	ImpE protein
YPTB2658	PF05488	PAAR motif
YPTB2659	PF05954	Phage late control gene D protein (GPD)
YPTB2660	PF06744	YPTB2660
YPTB2660	PF06761	YPTB2660
YPTB2660	PF14331	YPTB2660
YPTB2661	PF00691	OmpA family
YPTB2661	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPTB2662	PF05936	YPTB2662
YPTB2663	PF12790	Type VI secretion lipoprotein
YPTB2664	PF05638	Protein of unknown function (DUF796)
YPTB2665	PF05943	YPTB2665
YPTB2666	PF05591	YPTB2666
YPTB2667	PF00419	Fimbrial protein
YPTB2668	PF00577	Outer membrane usher protein
YPTB2668	PF13954	PapC N-terminal domain
YPTB2669	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB2669	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB2670	PF16970	YPTB2670
YPTB2671	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB2671	PF02861	Clp amino terminal domain
YPTB2671	PF07724	AAA domain (Cdc48 subfamily)
YPTB2671	PF10431	C-terminal, D2-small domain, of ClpB protein
YPTB2672	PF05947	YPTB2672
YPTB2673	PF06996	YPTB2673
YPTB2674	PF06812	YPTB2674
YPTB2675	PF00419	Fimbrial protein
YPTB2676	PF11397	YPTB2676
YPTB2678	PF00691	OmpA family
YPTB2679	PF08786	Domain of unknown function (DUF1795)
YPTB2680	PF00196	Bacterial regulatory proteins, luxR family
YPTB2681	PF13406	Transglycosylase SLT domain
YPTB2682	PF13343	Bacterial extracellular solute-binding protein
YPTB2683	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2684	PF00005	ABC transporter
YPTB2685	PF09900	YPTB2685
YPTB2686	PF05638	Protein of unknown function (DUF796)
YPTB2687	PF13988	YPTB2687
YPTB2688	PF00384	Molybdopterin oxidoreductase
YPTB2688	PF01568	Molydopterin dinucleotide binding domain
YPTB2688	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPTB2689	PF12800	4Fe-4S binding domain
YPTB2689	PF13247	4Fe-4S dicluster domain
YPTB2690	PF04976	YPTB2690
YPTB2691	PF02613	Nitrate reductase delta subunit
YPTB2692	PF00037	4Fe-4S binding domain
YPTB2692	PF12838	4Fe-4S dicluster domain
YPTB2693	PF05643	Putative bacterial lipoprotein (DUF799)
YPTB2694	PF16068	YPTB2694
YPTB2695	PF03783	Curli production assembly/transport component CsgG
YPTB2696	PF15970	YPTB2696
YPTB2697	PF01292	Prokaryotic cytochrome b561
YPTB2698	PF00155	Aminotransferase class I and II
YPTB2699	PF07350	Protein of unknown function (DUF1479)
YPTB2700	PF02685	Glucokinase
YPTB2701	PF05232	YPTB2701
YPTB2702	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB2702	PF03466	LysR substrate binding domain
YPTB2703	PF00248	Aldo/keto reductase family
YPTB2704	PF10697	YPTB2704
YPTB2705	PF01566	YPTB2705
YPTB2706	PF01773	Na+ dependent nucleoside transporter N-terminus
YPTB2706	PF07662	Na+ dependent nucleoside transporter C-terminus
YPTB2706	PF07670	Nucleoside recognition
YPTB2707	PF00749	tRNA synthetases class I (E and Q), catalytic domain
YPTB2708	PF06042	Bacterial protein of unknown function (DUF925)
YPTB2709	PF14282	YPTB2709
YPTB2710	PF12843	YPTB2710
YPTB2711	PF00533	BRCA1 C Terminus (BRCT) domain
YPTB2711	PF01653	NAD-dependent DNA ligase adenylation domain
YPTB2711	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
YPTB2711	PF03120	NAD-dependent DNA ligase OB-fold domain
YPTB2711	PF12826	Helix-hairpin-helix motif
YPTB2711	PF14520	Helix-hairpin-helix domain
YPTB2712	PF04354	ZipA, C-terminal FtsZ-binding domain
YPTB2713	PF07264	Etoposide-induced protein 2
YPTB2714	PF00291	Pyridoxal-phosphate dependent enzyme
YPTB2715	PF00381	PTS HPr component phosphorylation site
YPTB2716	PF00391	PEP-utilising enzyme, mobile domain
YPTB2716	PF02896	PEP-utilising enzyme, TIM barrel domain
YPTB2716	PF05524	PEP-utilising enzyme, N-terminal
YPTB2717	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YPTB2718	PF00512	His Kinase A (phospho-acceptor) domain
YPTB2718	PF00672	HAMP domain
YPTB2718	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB2719	PF00072	Response regulator receiver domain
YPTB2719	PF00486	Transcriptional regulatory protein, C terminal
YPTB2720	PF16576	YPTB2720
YPTB2721	PF00005	ABC transporter
YPTB2721	PF02687	YPTB2721
YPTB2721	PF12704	MacB-like periplasmic core domain
YPTB2722	PF00581	Rhodanese-like domain
YPTB2722	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPTB2722	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB2724	PF11755	YPTB2724
YPTB2725	PF00557	Metallopeptidase family M24
YPTB2725	PF01321	Creatinase/Prolidase N-terminal domain
YPTB2726	PF00155	Aminotransferase class I and II
YPTB2727	PF00092	von Willebrand factor type A domain
YPTB2728	PF00512	His Kinase A (phospho-acceptor) domain
YPTB2728	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB2729	PF00072	Response regulator receiver domain
YPTB2729	PF00486	Transcriptional regulatory protein, C terminal
YPTB2731	PF00291	Pyridoxal-phosphate dependent enzyme
YPTB2732	PF00005	ABC transporter
YPTB2733	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2734	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2735	PF13531	Bacterial extracellular solute-binding protein
YPTB2736	PF07690	Major Facilitator Superfamily
YPTB2737	PF01380	SIS domain
YPTB2737	PF01418	Helix-turn-helix domain, rpiR family
YPTB2738	PF04074	Domain of unknown function (DUF386)
YPTB2739	PF00480	ROK family
YPTB2740	PF12468	Type III secretion system leucine rich repeat protein
YPTB2740	PF13855	Leucine rich repeat
YPTB2741	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
YPTB2742	PF00701	Dihydrodipicolinate synthetase family
YPTB2743	PF04261	Dyp-type peroxidase family
YPTB2744	PF06572	Protein of unknown function (DUF1131)
YPTB2745	PF04076	Bacterial OB fold (BOF) protein
YPTB2746	PF03212	Pertactin
YPTB2746	PF03797	Autotransporter beta-domain
YPTB2753	PF00583	Acetyltransferase (GNAT) family
YPTB2754	PF01218	Coproporphyrinogen III oxidase
YPTB2755	PF02639	YPTB2755
YPTB2756	PF00390	Malic enzyme, N-terminal domain
YPTB2756	PF01515	Phosphate acetyl/butaryl transferase
YPTB2756	PF03949	Malic enzyme, NAD binding domain
YPTB2757	PF00293	NUDIX domain
YPTB2758	PF03264	NapC/NirT cytochrome c family, N-terminal region
YPTB2759	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
YPTB2760	PF00384	Molybdopterin oxidoreductase
YPTB2760	PF01568	Molydopterin dinucleotide binding domain
YPTB2760	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
YPTB2760	PF10518	TAT (twin-arginine translocation) pathway signal sequence
YPTB2761	PF03927	NapD protein
YPTB2762	PF12838	4Fe-4S dicluster domain
YPTB2762	PF13187	4Fe-4S dicluster domain
YPTB2763	PF00072	Response regulator receiver domain
YPTB2763	PF00196	Bacterial regulatory proteins, luxR family
YPTB2764	PF09904	Winged helix-turn helix
YPTB2765	PF00873	AcrB/AcrD/AcrF family
YPTB2767	PF04307	YPTB2767
YPTB2768	PF04055	Radical SAM superfamily
YPTB2768	PF13353	4Fe-4S single cluster domain
YPTB2769	PF00884	Sulfatase
YPTB2770	PF00005	ABC transporter
YPTB2771	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2772	PF13416	Bacterial extracellular solute-binding protein
YPTB2773	PF12688	Tetratrico peptide repeat
YPTB2774	PF03960	ArsC family
YPTB2775	PF01546	Peptidase family M20/M25/M40
YPTB2775	PF07687	Peptidase dimerisation domain
YPTB2776	PF02557	D-alanyl-D-alanine carboxypeptidase
YPTB2777	PF13980	YPTB2777
YPTB2778	PF05127	Helicase
YPTB2778	PF08351	Domain of unknown function (DUF1726)
YPTB2778	PF13718	GNAT acetyltransferase 2
YPTB2778	PF17176	YPTB2778
YPTB2779	PF04284	YPTB2779
YPTB2780	PF04228	YPTB2780
YPTB2781	PF01259	SAICAR synthetase
YPTB2782	PF06804	NlpB/DapX lipoprotein
YPTB2783	PF00701	Dihydrodipicolinate synthetase family
YPTB2784	PF13740	ACT domain
YPTB2785	PF00578	AhpC/TSA family
YPTB2789	PF01594	YPTB2789
YPTB2790	PF01435	Peptidase family M48
YPTB2790	PF14559	Tetratricopeptide repeat
YPTB2791	PF03960	ArsC family
YPTB2792	PF00308	Bacterial dnaA  protein
YPTB2793	PF00860	Permease family
YPTB2794	PF14681	Uracil phosphoribosyltransferase
YPTB2795	PF00586	AIR synthase related protein, N-terminal domain
YPTB2795	PF02769	AIR synthase related protein, C-terminal domain
YPTB2796	PF00551	Formyl transferase
YPTB2797	PF13302	Acetyltransferase (GNAT) domain
YPTB2798	PF03692	YPTB2798
YPTB2799	PF00005	ABC transporter
YPTB2800	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2801	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2802	PF02503	Polyphosphate kinase middle domain
YPTB2802	PF13089	Polyphosphate kinase N-terminal domain
YPTB2802	PF13090	Polyphosphate kinase C-terminal domain
YPTB2803	PF02541	Ppx/GppA phosphatase family
YPTB2804	PF11119	YPTB2804
YPTB2805	PF00571	CBS domain
YPTB2805	PF01769	Divalent cation transporter
YPTB2805	PF03448	MgtE intracellular N domain
YPTB2806	PF00012	Hsp70 protein
YPTB2807	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2808	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2809	PF13416	Bacterial extracellular solute-binding protein
YPTB2810	PF00202	Aminotransferase class-III
YPTB2811	PF00155	Aminotransferase class I and II
YPTB2811	PF00392	Bacterial regulatory proteins, gntR family
YPTB2812	PF00005	ABC transporter
YPTB2812	PF08402	TOBE domain
YPTB2813	PF13437	HlyD family secretion protein
YPTB2813	PF13533	Biotin-lipoyl like
YPTB2814	PF00873	AcrB/AcrD/AcrF family
YPTB2815	PF00873	AcrB/AcrD/AcrF family
YPTB2816	PF07690	Major Facilitator Superfamily
YPTB2817	PF00512	His Kinase A (phospho-acceptor) domain
YPTB2817	PF00672	HAMP domain
YPTB2817	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB2818	PF00072	Response regulator receiver domain
YPTB2818	PF00486	Transcriptional regulatory protein, C terminal
YPTB2819	PF07411	Domain of unknown function (DUF1508)
YPTB2820	PF01136	YPTB2820
YPTB2820	PF16325	YPTB2820
YPTB2821	PF00781	Diacylglycerol kinase catalytic domain
YPTB2822	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
YPTB2824	PF08543	Phosphomethylpyrimidine kinase
YPTB2825	PF06092	YPTB2825
YPTB2827	PF06836	YPTB2827
YPTB2828	PF06836	YPTB2828
YPTB2829	PF06836	YPTB2829
YPTB2830	PF06836	YPTB2830
YPTB2831	PF05638	Protein of unknown function (DUF796)
YPTB2832	PF00117	Glutamine amidotransferase class-I
YPTB2832	PF00958	GMP synthase C terminal domain
YPTB2832	PF02540	NAD synthase
YPTB2833	PF00478	IMP dehydrogenase / GMP reductase domain
YPTB2833	PF00571	CBS domain
YPTB2834	PF02601	YPTB2834
YPTB2834	PF13742	YPTB2834
YPTB2835	PF07191	zinc-ribbons
YPTB2836	PF03547	YPTB2836
YPTB2837	PF01926	50S ribosome-binding GTPase
YPTB2837	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
YPTB2838	PF13360	PQQ-like domain
YPTB2839	PF09976	Tetratricopeptide repeat
YPTB2840	PF03129	Anticodon binding domain
YPTB2840	PF13393	Histidyl-tRNA synthetase
YPTB2841	PF04551	GcpE protein
YPTB2842	PF13413	Helix-turn-helix domain
YPTB2842	PF13464	YPTB2842
YPTB2843	PF13181	Tetratricopeptide repeat
YPTB2843	PF13431	Tetratricopeptide repeat
YPTB2844	PF04055	Radical SAM superfamily
YPTB2845	PF00334	Nucleoside diphosphate kinase
YPTB2846	PF00030	Beta/Gamma crystallin
YPTB2846	PF08964	Beta/Gamma crystallin
YPTB2846	PF09101	Exotoxin A binding
YPTB2848	PF03212	Pertactin
YPTB2848	PF03797	Autotransporter beta-domain
YPTB2849	PF03212	Pertactin
YPTB2849	PF03797	Autotransporter beta-domain
YPTB2850	PF03212	Pertactin
YPTB2850	PF03797	Autotransporter beta-domain
YPTB2851	PF07179	YPTB2851
YPTB2851	PF14581	YPTB2851
YPTB2852	PF00883	Cytosol aminopeptidase family, catalytic domain
YPTB2852	PF12404	YPTB2852
YPTB2853	PF04384	Iron-sulphur cluster assembly
YPTB2854	PF00111	2Fe-2S iron-sulfur cluster binding domain
YPTB2855	PF00012	Hsp70 protein
YPTB2856	PF00226	DnaJ domain
YPTB2856	PF07743	HSCB C-terminal oligomerisation domain
YPTB2857	PF01521	Iron-sulphur cluster biosynthesis
YPTB2858	PF01592	NifU-like N terminal domain
YPTB2859	PF00266	Aminotransferase class-V
YPTB2860	PF02082	Transcriptional regulator
YPTB2861	PF00588	SpoU rRNA Methylase family
YPTB2862	PF00459	Inositol monophosphatase family
YPTB2863	PF03824	YPTB2863
YPTB2864	PF06226	YPTB2864
YPTB2865	PF00874	PRD domain
YPTB2866	PF12832	MFS_1 like family
YPTB2867	PF13505	Outer membrane protein beta-barrel domain
YPTB2869	PF00464	Serine hydroxymethyltransferase
YPTB2870	PF00042	Globin
YPTB2870	PF00175	Oxidoreductase NAD-binding domain
YPTB2870	PF00970	Oxidoreductase FAD-binding domain
YPTB2871	PF14502	Helix-turn-helix domain
YPTB2871	PF14503	YhfZ C-terminal domain
YPTB2872	PF00543	Nitrogen regulatory protein P-II
YPTB2873	PF00795	Carbon-nitrogen hydrolase
YPTB2873	PF02540	NAD synthase
YPTB2874	PF00072	Response regulator receiver domain
YPTB2874	PF00158	Sigma-54 interaction domain
YPTB2875	PF13942	YPTB2875
YPTB2876	PF00512	His Kinase A (phospho-acceptor) domain
YPTB2876	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB2879	PF02769	AIR synthase related protein, C-terminal domain
YPTB2879	PF13507	CobB/CobQ-like glutamine amidotransferase domain
YPTB2880	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB2880	PF01464	Transglycosylase SLT domain
YPTB2881	PF14437	YPTB2881
YPTB2882	PF12710	haloacid dehalogenase-like hydrolase
YPTB2883	PF01380	SIS domain
YPTB2884	PF01380	SIS domain
YPTB2884	PF01418	Helix-turn-helix domain, rpiR family
YPTB2885	PF12838	4Fe-4S dicluster domain
YPTB2886	PF01648	4'-phosphopantetheinyl transferase superfamily
YPTB2887	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
YPTB2888	PF02565	Recombination protein O C terminal
YPTB2888	PF11967	Recombination protein O N terminal
YPTB2889	PF01926	50S ribosome-binding GTPase
YPTB2889	PF07650	KH domain
YPTB2890	PF00035	Double-stranded RNA binding motif
YPTB2890	PF14622	Ribonuclease-III-like
YPTB2891	PF00717	Peptidase S24-like
YPTB2891	PF10502	Signal peptidase, peptidase S26
YPTB2892	PF00009	Elongation factor Tu GTP binding domain
YPTB2892	PF00679	Elongation factor G C-terminus
YPTB2892	PF03144	Elongation factor Tu domain 2
YPTB2892	PF06421	GTP-binding protein LepA C-terminus
YPTB2894	PF04246	YPTB2894
YPTB2895	PF03888	MucB/RseB family
YPTB2895	PF17188	YPTB2895
YPTB2896	PF03872	Anti sigma-E protein RseA, N-terminal domain
YPTB2896	PF03873	Anti sigma-E protein RseA, C-terminal domain
YPTB2897	PF04542	Sigma-70 region 2
YPTB2897	PF08281	Sigma-70, region 4
YPTB2898	PF00890	FAD binding domain
YPTB2898	PF02910	Fumarate reductase flavoprotein C-term
YPTB2899	PF05175	Methyltransferase small domain
YPTB2900	PF00270	DEAD/DEAH box helicase
YPTB2900	PF00271	Helicase conserved C-terminal domain
YPTB2902	PF11187	Protein of unknown function (DUF2974)
YPTB2903	PF01228	Glycine radical
YPTB2904	PF03167	Uracil DNA glycosylase superfamily
YPTB2905	PF01470	Pyroglutamyl peptidase
YPTB2906	PF06166	YPTB2906
YPTB2907	PF06149	YPTB2907
YPTB2908	PF03746	LamB/YcsF family
YPTB2909	PF02626	Allophanate hydrolase subunit 2
YPTB2910	PF02682	Allophanate hydrolase subunit 1
YPTB2911	PF01784	NIF3 (NGG1p interacting factor 3)
YPTB2912	PF02112	YPTB2912
YPTB2913	PF00875	DNA photolyase
YPTB2913	PF03441	FAD binding domain of DNA photolyase
YPTB2914	PF08349	YPTB2914
YPTB2915	PF10725	YPTB2915
YPTB2916	PF03814	YPTB2916
YPTB2917	PF00122	E1-E2 ATPase
YPTB2917	PF00702	haloacid dehalogenase-like hydrolase
YPTB2918	PF02669	YPTB2918
YPTB2919	PF00512	His Kinase A (phospho-acceptor) domain
YPTB2919	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB2919	PF02702	Osmosensitive K+ channel His kinase sensor domain
YPTB2919	PF13492	GAF domain
YPTB2919	PF13493	Domain of unknown function (DUF4118)
YPTB2920	PF00072	Response regulator receiver domain
YPTB2920	PF00486	Transcriptional regulatory protein, C terminal
YPTB2921	PF00892	EamA-like transporter family
YPTB2923	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
YPTB2923	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YPTB2923	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
YPTB2923	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
YPTB2924	PF03925	SeqA protein
YPTB2924	PF17206	YPTB2924
YPTB2927	PF04794	YdjC-like protein
YPTB2928	PF07883	Cupin domain
YPTB2928	PF12833	Helix-turn-helix domain
YPTB2929	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
YPTB2931	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPTB2932	PF02537	YPTB2932
YPTB2933	PF02537	YPTB2933
YPTB2934	PF02254	TrkA-N domain
YPTB2934	PF07885	Ion channel
YPTB2935	PF06411	HdeA/HdeB family
YPTB2936	PF03824	YPTB2936
YPTB2937	PF03253	Urea transporter
YPTB2938	PF01774	UreD urease accessory protein
YPTB2939	PF02492	CobW/HypB/UreG, nucleotide-binding domain
YPTB2940	PF01730	UreF
YPTB2941	PF02814	UreE urease accessory protein, N-terminal domain
YPTB2941	PF05194	UreE urease accessory protein, C-terminal domain
YPTB2942	PF00449	Urease alpha-subunit, N-terminal domain
YPTB2942	PF01979	Amidohydrolase family
YPTB2943	PF00699	Urease beta subunit
YPTB2944	PF00547	Urease, gamma subunit
YPTB2945	PF00005	ABC transporter
YPTB2946	PF00005	ABC transporter
YPTB2947	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2948	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2949	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB2950	PF00313	'Cold-shock' DNA-binding domain
YPTB2951	PF04899	YPTB2951
YPTB2952	PF06711	YPTB2952
YPTB2953	PF09400	Protein of unknown function (DUF2002)
YPTB2954	PF06392	YPTB2954
YPTB2955	PF00462	Glutaredoxin
YPTB2956	PF07972	NrdI Flavodoxin like
YPTB2957	PF00317	Ribonucleotide reductase, all-alpha domain
YPTB2957	PF02867	Ribonucleotide reductase, barrel domain
YPTB2957	PF08343	Ribonucleotide reductase N-terminal
YPTB2958	PF00268	Ribonucleotide reductase, small chain
YPTB2959	PF00005	ABC transporter
YPTB2959	PF00571	CBS domain
YPTB2960	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2961	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPTB2962	PF01522	Polysaccharide deacetylase
YPTB2963	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
YPTB2964	PF00929	Exonuclease
YPTB2965	PF00075	RNase H
YPTB2966	PF08241	Methyltransferase domain
YPTB2967	PF00753	Metallo-beta-lactamase superfamily
YPTB2967	PF16123	YPTB2967
YPTB2968	PF01464	Transglycosylase SLT domain
YPTB2968	PF01476	LysM domain
YPTB2969	PF03372	Endonuclease/Exonuclease/phosphatase family
YPTB2971	PF00248	Aldo/keto reductase family
YPTB2972	PF13242	HAD-hyrolase-like
YPTB2973	PF00005	ABC transporter
YPTB2973	PF09383	NIL domain
YPTB2974	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB2975	PF03180	NLPA lipoprotein
YPTB2976	PF16358	YPTB2976
YPTB2977	PF01980	Uncharacterised protein family UPF0066
YPTB2978	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
YPTB2978	PF03129	Anticodon binding domain
YPTB2978	PF04073	Aminoacyl-tRNA editing domain
YPTB2979	PF04170	NlpE N-terminal domain
YPTB2979	PF17185	YPTB2979
YPTB2980	PF00472	RF-1 domain
YPTB2981	PF07152	YaeQ protein
YPTB2982	PF06786	YPTB2982
YPTB2983	PF07073	Modulator of Rho-dependent transcription termination (ROF)
YPTB2984	PF00034	Cytochrome c
YPTB2985	PF01171	PP-loop family
YPTB2985	PF09179	TilS substrate binding domain
YPTB2985	PF11734	TilS substrate C-terminal domain
YPTB2986	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YPTB2987	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
YPTB2988	PF01336	OB-fold nucleic acid binding domain
YPTB2988	PF02811	PHP domain
YPTB2988	PF07733	Bacterial DNA polymerase III alpha subunit
YPTB2988	PF14579	Helix-hairpin-helix motif
YPTB2989	PF01351	Ribonuclease HII
YPTB2990	PF02684	YPTB2990
YPTB2991	PF00132	Bacterial transferase hexapeptide (six repeats)
YPTB2991	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
YPTB2992	PF07977	FabA-like domain
YPTB2993	PF00132	Bacterial transferase hexapeptide (six repeats)
YPTB2993	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
YPTB2994	PF03938	Outer membrane protein (OmpH-like)
YPTB2995	PF01103	Surface antigen
YPTB2995	PF07244	Surface antigen variable number repeat
YPTB2996	PF00595	PDZ domain (Also known as DHR or GLGF)
YPTB2996	PF02163	Peptidase family M50
YPTB2997	PF01148	Cytidylyltransferase family
YPTB2998	PF01255	Putative undecaprenyl diphosphate synthase
YPTB2999	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
YPTB2999	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
YPTB2999	PF13288	DXP reductoisomerase C-terminal domain
YPTB3000	PF01765	Ribosome recycling factor
YPTB3001	PF00696	Amino acid kinase family
YPTB3002	PF00889	Elongation factor TS
YPTB3003	PF00318	Ribosomal protein S2
YPTB3004	PF00557	Metallopeptidase family M24
YPTB3005	PF01842	ACT domain
YPTB3005	PF01909	Nucleotidyltransferase domain
YPTB3005	PF01966	HD domain
YPTB3005	PF08335	GlnD PII-uridylyltransferase
YPTB3006	PF00132	Bacterial transferase hexapeptide (six repeats)
YPTB3006	PF14602	Hexapeptide repeat of succinyl-transferase
YPTB3006	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
YPTB3007	PF11944	YPTB3007
YPTB3008	PF00258	Flavodoxin
YPTB3009	PF00849	RNA pseudouridylate synthase
YPTB3010	PF04287	tRNA pseudouridine synthase C
YPTB3011	PF07348	Syd protein (SUKH-2)
YPTB3012	PF14489	QueF-like protein
YPTB3012	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
YPTB3013	PF03641	Possible lysine decarboxylase
YPTB3013	PF11892	Domain of unknown function (DUF3412)
YPTB3013	PF14793	Domain of unknown function (DUF4478)
YPTB3014	PF01367	5'-3' exonuclease, C-terminal SAM fold
YPTB3014	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
YPTB3015	PF01728	FtsJ-like methyltransferase
YPTB3016	PF04241	YPTB3016
YPTB3017	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3017	PF03466	LysR substrate binding domain
YPTB3018	PF00266	Aminotransferase class-V
YPTB3019	PF02657	Fe-S metabolism associated domain
YPTB3020	PF00899	ThiF family
YPTB3021	PF03562	MltA specific insert domain
YPTB3021	PF06725	3D domain
YPTB3022	PF01520	N-acetylmuramoyl-L-alanine amidase
YPTB3022	PF11741	AMIN domain
YPTB3023	PF00583	Acetyltransferase (GNAT) family
YPTB3023	PF00696	Amino acid kinase family
YPTB3024	PF13538	UvrD-like helicase C-terminal domain
YPTB3024	PF13604	AAA domain
YPTB3025	PF00580	UvrD/REP helicase N-terminal domain
YPTB3025	PF13361	UvrD-like helicase C-terminal domain
YPTB3026	PF00675	Insulinase (Peptidase family M16)
YPTB3026	PF05193	Peptidase M16 inactive domain
YPTB3026	PF16187	YPTB3026
YPTB3027	PF04257	Exodeoxyribonuclease V, gamma subunit
YPTB3028	PF07963	Prokaryotic N-terminal methylation motif
YPTB3028	PF12528	YPTB3028
YPTB3029	PF10713	YPTB3029
YPTB3031	PF07963	Prokaryotic N-terminal methylation motif
YPTB3033	PF00303	Thymidylate synthase
YPTB3034	PF01790	YPTB3034
YPTB3035	PF00391	PEP-utilising enzyme, mobile domain
YPTB3035	PF01590	GAF domain
YPTB3035	PF02896	PEP-utilising enzyme, TIM barrel domain
YPTB3035	PF05524	PEP-utilising enzyme, N-terminal
YPTB3036	PF00293	NUDIX domain
YPTB3037	PF02976	DNA mismatch repair enzyme MutH
YPTB3038	PF00248	Aldo/keto reductase family
YPTB3041	PF07690	Major Facilitator Superfamily
YPTB3042	PF00501	AMP-binding enzyme
YPTB3042	PF01553	Acyltransferase
YPTB3042	PF13193	AMP-binding enzyme C-terminal domain
YPTB3043	PF00384	Molybdopterin oxidoreductase
YPTB3043	PF01568	Molydopterin dinucleotide binding domain
YPTB3044	PF00356	Bacterial regulatory proteins, lacI family
YPTB3044	PF13377	Periplasmic binding protein-like domain
YPTB3045	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
YPTB3045	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPTB3046	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3046	PF03466	LysR substrate binding domain
YPTB3047	PF07690	Major Facilitator Superfamily
YPTB3048	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3048	PF03466	LysR substrate binding domain
YPTB3049	PF00753	Metallo-beta-lactamase superfamily
YPTB3050	PF01323	DSBA-like thioredoxin domain
YPTB3051	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPTB3051	PF02203	Tar ligand binding domain homologue
YPTB3053	PF00486	Transcriptional regulatory protein, C terminal
YPTB3054	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
YPTB3055	PF01478	Type IV leader peptidase family
YPTB3055	PF06750	YPTB3055
YPTB3057	PF05134	Type II secretion system (T2SS), protein L
YPTB3057	PF12693	GspL periplasmic domain
YPTB3058	PF03934	Type II secretion system (T2SS), protein K
YPTB3059	PF07963	Prokaryotic N-terminal methylation motif
YPTB3059	PF11612	Type II secretion system (T2SS), protein J
YPTB3060	PF02501	Type II secretion system (T2SS), protein I
YPTB3061	PF07963	Prokaryotic N-terminal methylation motif
YPTB3062	PF07963	Prokaryotic N-terminal methylation motif
YPTB3062	PF08334	Type II secretion system (T2SS), protein G
YPTB3063	PF00482	Type II secretion system (T2SS), protein F
YPTB3064	PF00437	Type II/IV secretion system protein
YPTB3065	PF00263	YPTB3065
YPTB3065	PF03958	Bacterial type II/III secretion system short domain
YPTB3066	PF11356	Type IV pilus biogenesis
YPTB3068	PF00484	Carbonic anhydrase
YPTB3071	PF16946	YPTB3071
YPTB3072	PF03797	Autotransporter beta-domain
YPTB3073	PF02278	Polysaccharide lyase family 8, super-sandwich domain
YPTB3073	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
YPTB3073	PF09092	Lyase, N terminal
YPTB3073	PF09093	Lyase, catalytic
YPTB3074	PF00884	Sulfatase
YPTB3075	PF00455	YPTB3075
YPTB3075	PF08220	DeoR-like helix-turn-helix domain
YPTB3076	PF08013	Tagatose 6 phosphate kinase
YPTB3077	PF01380	SIS domain
YPTB3078	PF03830	PTS system sorbose subfamily IIB component
YPTB3079	PF03609	YPTB3079
YPTB3080	PF03613	YPTB3080
YPTB3081	PF03610	PTS system fructose IIA component
YPTB3082	PF01979	Amidohydrolase family
YPTB3083	PF13561	Enoyl-(Acyl carrier protein) reductase
YPTB3084	PF07470	Glycosyl Hydrolase Family 88
YPTB3085	PF04055	Radical SAM superfamily
YPTB3085	PF13186	Iron-sulfur cluster-binding domain
YPTB3086	PF00884	Sulfatase
YPTB3087	PF10022	YPTB3087
YPTB3088	PF01116	Fructose-bisphosphate aldolase class-II
YPTB3089	PF01965	DJ-1/PfpI family
YPTB3091	PF00356	Bacterial regulatory proteins, lacI family
YPTB3091	PF13377	Periplasmic binding protein-like domain
YPTB3092	PF07690	Major Facilitator Superfamily
YPTB3093	PF01055	Glycosyl hydrolases family 31
YPTB3093	PF13802	Galactose mutarotase-like
YPTB3093	PF17137	YPTB3093
YPTB3094	PF00356	Bacterial regulatory proteins, lacI family
YPTB3094	PF13377	Periplasmic binding protein-like domain
YPTB3095	PF02264	LamB porin
YPTB3097	PF02449	Beta-galactosidase
YPTB3097	PF08532	Beta-galactosidase trimerisation domain
YPTB3097	PF08533	Beta-galactosidase C-terminal domain
YPTB3098	PF07745	Glycosyl hydrolase family 53
YPTB3099	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3100	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3101	PF13416	Bacterial extracellular solute-binding protein
YPTB3102	PF00005	ABC transporter
YPTB3102	PF08402	TOBE domain
YPTB3103	PF00005	ABC transporter
YPTB3104	PF02653	YPTB3104
YPTB3105	PF13407	Periplasmic binding protein domain
YPTB3107	PF05708	Orthopoxvirus protein of unknown function (DUF830)
YPTB3108	PF03551	Transcriptional regulator PadR-like family
YPTB3109	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
YPTB3110	PF05488	PAAR motif
YPTB3112	PF11340	YPTB3112
YPTB3114	PF09204	Bacterial self-protective colicin-like immunity
YPTB3116	PF05488	PAAR motif
YPTB3116	PF06958	S-type Pyocin
YPTB3117	PF02661	Fic/DOC family
YPTB3120	PF05930	Prophage CP4-57 regulatory protein (AlpA)
YPTB3121	PF05973	YPTB3121
YPTB3122	PF03288	Poxvirus D5 protein-like
YPTB3122	PF08273	Zinc-binding domain of primase-helicase
YPTB3122	PF08706	YPTB3122
YPTB3122	PF13362	Toprim domain
YPTB3123	PF15731	YPTB3123
YPTB3124	PF15723	YPTB3124
YPTB3125	PF01381	Helix-turn-helix
YPTB3126	PF05016	Plasmid stabilisation system protein
YPTB3129	PF00589	Phage integrase family
YPTB3130	PF01381	Helix-turn-helix
YPTB3131	PF10743	Regulatory phage protein cox
YPTB3134	PF17282	YPTB3134
YPTB3135	PF12961	Domain of Unknown Function with PDB structure (DUF3850)
YPTB3136	PF00929	Exonuclease
YPTB3137	PF05840	YPTB3137
YPTB3138	PF04606	YPTB3138
YPTB3139	PF04860	Phage portal protein
YPTB3140	PF03237	Terminase-like family
YPTB3140	PF06056	Putative ATPase subunit of terminase (gpP-like)
YPTB3140	PF17289	YPTB3140
YPTB3141	PF05929	YPTB3141
YPTB3142	PF05125	YPTB3142
YPTB3143	PF05944	YPTB3143
YPTB3144	PF05926	YPTB3144
YPTB3145	PF06891	YPTB3145
YPTB3147	PF10758	YPTB3147
YPTB3148	PF10772	YPTB3148
YPTB3149	PF04550	YPTB3149
YPTB3150	PF13539	D-alanyl-D-alanine carboxypeptidase
YPTB3152	PF10963	YPTB3152
YPTB3153	PF10145	YPTB3153
YPTB3154	PF10761	YPTB3154
YPTB3155	PF04865	YPTB3155
YPTB3157	PF03406	YPTB3157
YPTB3157	PF12571	YPTB3157
YPTB3158	PF02413	YPTB3158
YPTB3162	PF00589	Phage integrase family
YPTB3162	PF13356	Domain of unknown function (DUF4102)
YPTB3163	PF00152	tRNA synthetases class II (D, K and N)
YPTB3163	PF01336	OB-fold nucleic acid binding domain
YPTB3165	PF01368	DHH family
YPTB3165	PF02272	DHHA1 domain
YPTB3166	PF10411	Disulfide bond isomerase protein N-terminus
YPTB3166	PF13098	Thioredoxin-like domain
YPTB3167	PF00589	Phage integrase family
YPTB3167	PF02899	Phage integrase, N-terminal SAM-like domain
YPTB3168	PF00258	Flavodoxin
YPTB3169	PF06123	YPTB3169
YPTB3170	PF00512	His Kinase A (phospho-acceptor) domain
YPTB3170	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB3170	PF14827	Sensory domain of two-component sensor kinase
YPTB3171	PF00072	Response regulator receiver domain
YPTB3171	PF00486	Transcriptional regulatory protein, C terminal
YPTB3172	PF07254	YPTB3172
YPTB3173	PF03937	Flavinator of succinate dehydrogenase
YPTB3174	PF01571	Aminomethyltransferase folate-binding domain
YPTB3175	PF09933	YPTB3175
YPTB3176	PF03006	YPTB3176
YPTB3179	PF13924	YPTB3179
YPTB3180	PF02347	Glycine cleavage system P-protein
YPTB3181	PF01597	Glycine cleavage H-protein
YPTB3182	PF01571	Aminomethyltransferase folate-binding domain
YPTB3182	PF08669	Glycine cleavage T-protein C-terminal barrel domain
YPTB3183	PF01494	FAD binding domain
YPTB3184	PF01494	FAD binding domain
YPTB3185	PF00557	Metallopeptidase family M24
YPTB3185	PF05195	Aminopeptidase P, N-terminal domain
YPTB3186	PF03695	Uncharacterised protein family (UPF0149)
YPTB3187	PF05164	Cell division protein ZapA
YPTB3188	PF01812	5-formyltetrahydrofolate cyclo-ligase family
YPTB3189	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPTB3189	PF01842	ACT domain
YPTB3189	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPTB3190	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
YPTB3191	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3191	PF03466	LysR substrate binding domain
YPTB3192	PF04402	Protein of unknown function (DUF541)
YPTB3193	PF01810	YPTB3193
YPTB3194	PF00924	Mechanosensitive ion channel
YPTB3194	PF05552	Conserved TM helix
YPTB3195	PF01116	Fructose-bisphosphate aldolase class-II
YPTB3196	PF00162	Phosphoglycerate kinase
YPTB3197	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPTB3197	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
YPTB3198	PF00456	Transketolase, thiamine diphosphate binding domain
YPTB3198	PF02779	Transketolase, pyrimidine binding domain
YPTB3198	PF02780	Transketolase, C-terminal domain
YPTB3199	PF01435	Peptidase family M48
YPTB3200	PF00355	Rieske [2Fe-2S] domain
YPTB3201	PF01797	Transposase IS200 like
YPTB3202	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YPTB3203	PF00438	S-adenosylmethionine synthetase, N-terminal domain
YPTB3203	PF02772	S-adenosylmethionine synthetase, central domain
YPTB3203	PF02773	S-adenosylmethionine synthetase, C-terminal domain
YPTB3204	PF10263	YPTB3204
YPTB3204	PF17283	YPTB3204
YPTB3205	PF04231	Endonuclease I
YPTB3206	PF04452	RNA methyltransferase
YPTB3207	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
YPTB3207	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
YPTB3208	PF02622	Uncharacterized ACR, COG1678
YPTB3209	PF03652	Uncharacterised protein family (UPF0081)
YPTB3210	PF00795	Carbon-nitrogen hydrolase
YPTB3211	PF04371	Porphyromonas-type peptidyl-arginine deiminase
YPTB3212	PF00437	Type II/IV secretion system protein
YPTB3213	PF01168	Alanine racemase, N-terminal domain
YPTB3214	PF03807	NADP oxidoreductase coenzyme F420-dependent
YPTB3214	PF14748	Pyrroline-5-carboxylate reductase dimerisation
YPTB3215	PF02325	YPTB3215
YPTB3216	PF02594	Uncharacterised ACR, YggU family COG1872
YPTB3217	PF01725	Ham1 family
YPTB3218	PF04055	Radical SAM superfamily
YPTB3218	PF06969	HemN C-terminal domain
YPTB3219	PF11713	Peptidase C80 family
YPTB3220	PF11101	YPTB3220
YPTB3221	PF04960	Glutaminase
YPTB3222	PF04320	YPTB3222
YPTB3223	PF02390	Putative methyltransferase
YPTB3224	PF00633	Helix-hairpin-helix motif
YPTB3224	PF00730	HhH-GPD superfamily base excision DNA repair protein
YPTB3224	PF10576	Iron-sulfur binding domain of endonuclease III
YPTB3224	PF14815	NUDIX domain
YPTB3225	PF04362	Bacterial Fe(2+) trafficking
YPTB3226	PF01464	Transglycosylase SLT domain
YPTB3226	PF11873	Domain of unknown function (DUF3393)
YPTB3227	PF01497	Periplasmic binding protein
YPTB3228	PF00593	TonB dependent receptor
YPTB3228	PF07715	TonB-dependent Receptor Plug Domain
YPTB3229	PF02653	YPTB3229
YPTB3230	PF00005	ABC transporter
YPTB3231	PF13407	Periplasmic binding protein domain
YPTB3232	PF01276	Orn/Lys/Arg decarboxylase, major domain
YPTB3232	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
YPTB3232	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
YPTB3236	PF03811	YPTB3236
YPTB3236	PF12759	YPTB3236
YPTB3238	PF01551	Peptidase family M23
YPTB3242	PF03811	YPTB3242
YPTB3242	PF12759	YPTB3242
YPTB3245	PF05954	Phage late control gene D protein (GPD)
YPTB3245	PF10106	YPTB3245
YPTB3245	PF13296	YPTB3245
YPTB3246	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB3246	PF07724	AAA domain (Cdc48 subfamily)
YPTB3246	PF10431	C-terminal, D2-small domain, of ClpB protein
YPTB3247	PF05638	Protein of unknown function (DUF796)
YPTB3248	PF00691	OmpA family
YPTB3249	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPTB3250	PF05936	YPTB3250
YPTB3251	PF05943	YPTB3251
YPTB3252	PF05591	YPTB3252
YPTB3255	PF03811	YPTB3255
YPTB3255	PF12759	YPTB3255
YPTB3257	PF02517	CAAX protease self-immunity
YPTB3258	PF00765	Autoinducer synthetase
YPTB3259	PF00196	Bacterial regulatory proteins, luxR family
YPTB3259	PF03472	Autoinducer binding domain
YPTB3260	PF10503	Esterase PHB depolymerase
YPTB3261	PF00775	Dioxygenase
YPTB3262	PF07690	Major Facilitator Superfamily
YPTB3263	PF04183	IucA / IucC family
YPTB3263	PF06276	Ferric iron reductase FhuF-like transporter
YPTB3264	PF13523	Acetyltransferase (GNAT) domain
YPTB3265	PF04183	IucA / IucC family
YPTB3265	PF06276	Ferric iron reductase FhuF-like transporter
YPTB3266	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
YPTB3267	PF00593	TonB dependent receptor
YPTB3267	PF07715	TonB-dependent Receptor Plug Domain
YPTB3268	PF13347	MFS/sugar transport protein
YPTB3269	PF00150	Cellulase (glycosyl hydrolase family 5)
YPTB3270	PF00356	Bacterial regulatory proteins, lacI family
YPTB3270	PF13377	Periplasmic binding protein-like domain
YPTB3271	PF00939	Sodium:sulfate symporter transmembrane region
YPTB3273	PF15571	YPTB3273
YPTB3281	PF15587	YPTB3281
YPTB3282	PF03527	YPTB3282
YPTB3282	PF05593	YPTB3282
YPTB3284	PF05954	Phage late control gene D protein (GPD)
YPTB3284	PF06715	Gp5 C-terminal repeat (3 copies)
YPTB3285	PF03797	Autotransporter beta-domain
YPTB3286	PF03797	Autotransporter beta-domain
YPTB3287	PF02447	YPTB3287
YPTB3290	PF00005	ABC transporter
YPTB3290	PF00664	ABC transporter transmembrane region
YPTB3291	PF00005	ABC transporter
YPTB3291	PF00664	ABC transporter transmembrane region
YPTB3292	PF07690	Major Facilitator Superfamily
YPTB3293	PF00975	Thioesterase domain
YPTB3294	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB3295	PF01370	NAD dependent epimerase/dehydratase family
YPTB3296	PF00501	AMP-binding enzyme
YPTB3296	PF00550	Phosphopantetheine attachment site
YPTB3296	PF00668	Condensation domain
YPTB3296	PF00975	Thioesterase domain
YPTB3296	PF08242	Methyltransferase domain
YPTB3297	PF00109	Beta-ketoacyl synthase, N-terminal domain
YPTB3297	PF00501	AMP-binding enzyme
YPTB3297	PF00550	Phosphopantetheine attachment site
YPTB3297	PF00668	Condensation domain
YPTB3297	PF02801	Beta-ketoacyl synthase, C-terminal domain
YPTB3298	PF00593	TonB dependent receptor
YPTB3298	PF07715	TonB-dependent Receptor Plug Domain
YPTB3299	PF01546	Peptidase family M20/M25/M40
YPTB3299	PF07687	Peptidase dimerisation domain
YPTB3300	PF03806	YPTB3300
YPTB3301	PF12468	Type III secretion system leucine rich repeat protein
YPTB3301	PF14496	C-terminal novel E3 ligase, LRR-interacting
YPTB3302	PF12468	Type III secretion system leucine rich repeat protein
YPTB3302	PF14496	C-terminal novel E3 ligase, LRR-interacting
YPTB3303	PF13018	YPTB3303
YPTB3305	PF07906	YPTB3305
YPTB3306	PF00873	AcrB/AcrD/AcrF family
YPTB3307	PF16576	YPTB3307
YPTB3308	PF00563	EAL domain
YPTB3308	PF00989	PAS fold
YPTB3308	PF00990	GGDEF domain
YPTB3308	PF05228	YPTB3308
YPTB3309	PF13518	Helix-turn-helix domain
YPTB3310	PF00665	Integrase core domain
YPTB3310	PF13276	YPTB3310
YPTB3311	PF00872	YPTB3311
YPTB3312	PF10840	YPTB3312
YPTB3313	PF05433	YPTB3313
YPTB3314	PF05656	YPTB3314
YPTB3318	PF00691	OmpA family
YPTB3319	PF01618	YPTB3319
YPTB3320	PF04539	Sigma-70 region 3
YPTB3320	PF04542	Sigma-70 region 2
YPTB3320	PF04545	Sigma-70, region 4
YPTB3321	PF03748	YPTB3321
YPTB3322	PF02120	Flagellar hook-length control protein FliK
YPTB3324	PF02561	Flagellar protein FliS
YPTB3325	PF02465	YPTB3325
YPTB3325	PF07195	YPTB3325
YPTB3325	PF07196	Flagellin hook IN motif
YPTB3326	PF00669	Bacterial flagellin N-terminal helical region
YPTB3326	PF00700	Bacterial flagellin C-terminal helical region
YPTB3327	PF00486	Transcriptional regulatory protein, C terminal
YPTB3330	PF00669	Bacterial flagellin N-terminal helical region
YPTB3331	PF00460	Flagella basal body rod protein
YPTB3331	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB3332	PF10135	YPTB3332
YPTB3333	PF02119	YPTB3333
YPTB3334	PF02107	YPTB3334
YPTB3335	PF00460	Flagella basal body rod protein
YPTB3335	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB3336	PF00460	Flagella basal body rod protein
YPTB3336	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB3337	PF00460	Flagella basal body rod protein
YPTB3337	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB3337	PF07559	Flagellar basal body protein FlaE
YPTB3338	PF03963	YPTB3338
YPTB3338	PF13860	FlgD Ig-like domain
YPTB3338	PF13861	FlgD Tudor-like domain
YPTB3339	PF00460	Flagella basal body rod protein
YPTB3339	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
YPTB3340	PF00460	Flagella basal body rod protein
YPTB3341	PF13144	SAF-like
YPTB3342	PF04316	Anti-sigma-28 factor, FlgM
YPTB3343	PF05130	FlgN protein
YPTB3344	PF02050	Flagellar FliJ protein
YPTB3345	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPTB3346	PF02108	YPTB3346
YPTB3346	PF09811	YPTB3346
YPTB3347	PF01706	FliG C-terminal domain
YPTB3347	PF14841	FliG middle domain
YPTB3347	PF14842	FliG N-terminal domain
YPTB3348	PF01514	Secretory protein of YscJ/FliF family
YPTB3348	PF08345	YPTB3348
YPTB3349	PF02049	YPTB3349
YPTB3350	PF00158	Sigma-54 interaction domain
YPTB3350	PF02954	Bacterial regulatory protein, Fis family
YPTB3351	PF01052	Surface presentation of antigens (SPOA)
YPTB3352	PF01052	Surface presentation of antigens (SPOA)
YPTB3353	PF00813	YPTB3353
YPTB3354	PF01313	YPTB3354
YPTB3355	PF01311	YPTB3355
YPTB3356	PF01312	FlhB HrpN YscU SpaS Family
YPTB3357	PF00771	FHIPEP family
YPTB3358	PF11153	YPTB3358
YPTB3360	PF01497	Periplasmic binding protein
YPTB3361	PF00419	Fimbrial protein
YPTB3362	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB3362	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB3363	PF00577	Outer membrane usher protein
YPTB3363	PF13953	PapC C-terminal domain
YPTB3363	PF13954	PapC N-terminal domain
YPTB3364	PF00419	Fimbrial protein
YPTB3365	PF00704	Glycosyl hydrolases family 18
YPTB3366	PF03067	Chitin binding domain
YPTB3370	PF01478	Type IV leader peptidase family
YPTB3372	PF00263	YPTB3372
YPTB3372	PF13629	YPTB3372
YPTB3375	PF00437	Type II/IV secretion system protein
YPTB3376	PF00482	Type II secretion system (T2SS), protein F
YPTB3377	PF00482	Type II secretion system (T2SS), protein F
YPTB3379	PF07811	YPTB3379
YPTB3380	PF16964	YPTB3380
YPTB3382	PF02472	Biopolymer transport protein ExbD/TolR
YPTB3383	PF01618	YPTB3383
YPTB3384	PF01053	Cys/Met metabolism PLP-dependent enzyme
YPTB3385	PF09335	YPTB3385
YPTB3386	PF06719	YPTB3386
YPTB3386	PF12833	Helix-turn-helix domain
YPTB3387	PF00465	Iron-containing alcohol dehydrogenase
YPTB3388	PF00248	Aldo/keto reductase family
YPTB3389	PF04055	Radical SAM superfamily
YPTB3389	PF08497	YPTB3389
YPTB3389	PF11842	YPTB3389
YPTB3390	PF07731	Multicopper oxidase
YPTB3390	PF07732	Multicopper oxidase
YPTB3391	PF01553	Acyltransferase
YPTB3392	PF00521	DNA gyrase/topoisomerase IV, subunit A
YPTB3392	PF03989	DNA gyrase C-terminal domain, beta-propeller
YPTB3393	PF02525	Flavodoxin-like fold
YPTB3394	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3394	PF03466	LysR substrate binding domain
YPTB3395	PF00204	DNA gyrase B
YPTB3395	PF00986	DNA gyrase B subunit, carboxyl terminus
YPTB3395	PF01751	Toprim domain
YPTB3395	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB3396	PF05728	Uncharacterised protein family (UPF0227)
YPTB3397	PF00149	Calcineurin-like phosphoesterase
YPTB3398	PF06853	YPTB3398
YPTB3399	PF00293	NUDIX domain
YPTB3400	PF02321	Outer membrane efflux protein
YPTB3401	PF06693	YPTB3401
YPTB3402	PF03738	Glutathionylspermidine synthase preATP-grasp
YPTB3403	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
YPTB3404	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
YPTB3405	PF04380	YPTB3405
YPTB3406	PF13520	Amino acid permease
YPTB3407	PF00294	pfkB family carbohydrate kinase
YPTB3407	PF01467	Cytidylyltransferase
YPTB3408	PF03710	Glutamate-ammonia ligase adenylyltransferase
YPTB3408	PF08335	GlnD PII-uridylyltransferase
YPTB3409	PF01928	CYTH domain
YPTB3410	PF08239	Bacterial SH3 domain
YPTB3411	PF01743	Poly A polymerase head domain
YPTB3411	PF01966	HD domain
YPTB3411	PF12627	Probable RNA and SrmB- binding site of polymerase A
YPTB3412	PF02673	YPTB3412
YPTB3413	PF02152	Dihydroneopterin aldolase
YPTB3414	PF02660	YPTB3414
YPTB3415	PF00814	Glycoprotease family
YPTB3416	PF01165	Ribosomal protein S21
YPTB3417	PF01807	CHC2 zinc finger
YPTB3417	PF08275	DNA primase catalytic core, N-terminal domain
YPTB3417	PF08278	DNA primase DnaG DnaB-binding
YPTB3417	PF10410	DnaB-helicase binding domain of primase
YPTB3417	PF13155	Toprim-like
YPTB3418	PF00140	Sigma-70 factor, region 1
YPTB3418	PF03979	Sigma-70 factor, region 1
YPTB3418	PF04539	Sigma-70 region 3
YPTB3418	PF04542	Sigma-70 region 2
YPTB3418	PF04545	Sigma-70, region 4
YPTB3418	PF04546	Sigma-70, non-essential region
YPTB3419	PF03592	Terminase small subunit
YPTB3424	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3424	PF03466	LysR substrate binding domain
YPTB3426	PF08803	Putative mono-oxygenase ydhR
YPTB3427	PF01042	Endoribonuclease L-PSP
YPTB3428	PF01042	Endoribonuclease L-PSP
YPTB3429	PF08348	YPTB3429
YPTB3429	PF13309	YPTB3429
YPTB3430	PF10604	Polyketide cyclase / dehydrase and lipid transport
YPTB3431	PF03553	YPTB3431
YPTB3432	PF00155	Aminotransferase class I and II
YPTB3435	PF17090	YPTB3435
YPTB3436	PF13437	HlyD family secretion protein
YPTB3436	PF13533	Biotin-lipoyl like
YPTB3437	PF04632	YPTB3437
YPTB3438	PF02321	Outer membrane efflux protein
YPTB3439	PF00933	Glycosyl hydrolase family 3 N terminal domain
YPTB3439	PF01915	Glycosyl hydrolase family 3 C-terminal domain
YPTB3439	PF14310	Fibronectin type III-like domain
YPTB3441	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3442	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3443	PF01547	Bacterial extracellular solute-binding protein
YPTB3444	PF00356	Bacterial regulatory proteins, lacI family
YPTB3444	PF13377	Periplasmic binding protein-like domain
YPTB3446	PF00005	ABC transporter
YPTB3446	PF08402	TOBE domain
YPTB3447	PF10091	Putative glucoamylase
YPTB3448	PF13557	YPTB3448
YPTB3449	PF03797	Autotransporter beta-domain
YPTB3455	PF07262	Protein of unknown function (DUF1436)
YPTB3460	PF04829	YPTB3460
YPTB3460	PF05860	haemagglutination activity domain
YPTB3460	PF13018	YPTB3460
YPTB3460	PF13332	YPTB3460
YPTB3461	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPTB3461	PF08479	POTRA domain, ShlB-type
YPTB3461	PF17287	YPTB3461
YPTB3462	PF00092	von Willebrand factor type A domain
YPTB3463	PF02342	TerD domain
YPTB3464	PF00092	von Willebrand factor type A domain
YPTB3465	PF00092	von Willebrand factor type A domain
YPTB3465	PF15616	YPTB3465
YPTB3466	PF13672	Protein phosphatase 2C
YPTB3467	PF00069	Protein kinase domain
YPTB3468	PF03729	YPTB3468
YPTB3469	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
YPTB3469	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB3470	PF05175	Methyltransferase small domain
YPTB3471	PF03212	Pertactin
YPTB3471	PF03797	Autotransporter beta-domain
YPTB3472	PF01863	Protein of unknown function DUF45
YPTB3473	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB3474	PF00375	Sodium:dicarboxylate symporter family
YPTB3475	PF10688	YPTB3475
YPTB3476	PF04295	YPTB3476
YPTB3476	PF08666	SAF domain
YPTB3477	PF01232	Mannitol dehydrogenase Rossmann domain
YPTB3477	PF08125	Mannitol dehydrogenase C-terminal domain
YPTB3478	PF02614	Glucuronate isomerase
YPTB3479	PF07690	Major Facilitator Superfamily
YPTB3480	PF00392	Bacterial regulatory proteins, gntR family
YPTB3480	PF07729	FCD domain
YPTB3482	PF09335	YPTB3482
YPTB3483	PF13721	SecD export protein N-terminal TM region
YPTB3484	PF06476	YPTB3484
YPTB3485	PF05957	YPTB3485
YPTB3486	PF07332	YPTB3486
YPTB3487	PF13997	YPTB3487
YPTB3488	PF07681	YPTB3488
YPTB3489	PF13409	Glutathione S-transferase, N-terminal domain
YPTB3489	PF13410	Glutathione S-transferase, C-terminal domain
YPTB3490	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3490	PF03466	LysR substrate binding domain
YPTB3491	PF02678	Pirin
YPTB3492	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPTB3493	PF04348	LppC putative lipoprotein
YPTB3494	PF02021	Uncharacterised protein family UPF0102
YPTB3495	PF13580	SIS domain
YPTB3496	PF04972	BON domain
YPTB3497	PF00912	Transglycosylase
YPTB3500	PF00072	Response regulator receiver domain
YPTB3500	PF00512	His Kinase A (phospho-acceptor) domain
YPTB3500	PF00989	PAS fold
YPTB3500	PF01627	Hpt domain
YPTB3500	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB3501	PF04055	Radical SAM superfamily
YPTB3501	PF16199	YPTB3501
YPTB3502	PF00310	Glutamine amidotransferases class-II
YPTB3502	PF01493	GXGXG motif
YPTB3502	PF01645	Conserved region in glutamate synthase
YPTB3502	PF04898	Glutamate synthase central domain
YPTB3503	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB3503	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
YPTB3505	PF04386	Stringent starvation protein B
YPTB3506	PF00043	Glutathione S-transferase, C-terminal domain
YPTB3506	PF02798	Glutathione S-transferase, N-terminal domain
YPTB3507	PF00380	Ribosomal protein S9/S16
YPTB3508	PF00572	Ribosomal protein L13
YPTB3509	PF03969	AFG1-like ATPase
YPTB3510	PF06295	YPTB3510
YPTB3511	PF00595	PDZ domain (Also known as DHR or GLGF)
YPTB3511	PF13180	PDZ domain
YPTB3511	PF13365	Trypsin-like peptidase domain
YPTB3512	PF13180	PDZ domain
YPTB3512	PF13365	Trypsin-like peptidase domain
YPTB3513	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YPTB3514	PF01722	BolA-like protein
YPTB3515	PF13466	STAS domain
YPTB3516	PF05494	Toluene tolerance, Ttg2
YPTB3517	PF02470	YPTB3517
YPTB3518	PF02405	YPTB3518
YPTB3519	PF00005	ABC transporter
YPTB3520	PF01699	Sodium/calcium exchanger protein
YPTB3521	PF00571	CBS domain
YPTB3521	PF01380	SIS domain
YPTB3522	PF08282	haloacid dehalogenase-like hydrolase
YPTB3523	PF06835	Lipopolysaccharide-assembly, LptC-related
YPTB3524	PF03968	OstA-like protein
YPTB3525	PF00005	ABC transporter
YPTB3525	PF12399	Branched-chain amino acid ATP-binding cassette transporter
YPTB3526	PF00309	YPTB3526
YPTB3526	PF04552	Sigma-54, DNA binding domain
YPTB3526	PF04963	Sigma-54 factor, core binding domain
YPTB3527	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
YPTB3528	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPTB3529	PF03668	YPTB3529
YPTB3530	PF00381	PTS HPr component phosphorylation site
YPTB3531	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
YPTB3531	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
YPTB3532	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
YPTB3532	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
YPTB3533	PF01042	Endoribonuclease L-PSP
YPTB3534	PF16743	YPTB3534
YPTB3535	PF00356	Bacterial regulatory proteins, lacI family
YPTB3535	PF13377	Periplasmic binding protein-like domain
YPTB3536	PF00367	phosphotransferase system, EIIB
YPTB3536	PF02378	Phosphotransferase system, EIIC
YPTB3537	PF00128	Alpha amylase, catalytic domain
YPTB3537	PF11941	Domain of unknown function (DUF3459)
YPTB3538	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPTB3538	PF14760	Rnk N-terminus
YPTB3539	PF07361	Cytochrome b562
YPTB3541	PF01523	Putative modulator of DNA gyrase
YPTB3542	PF04751	Protein of unknown function (DUF615)
YPTB3543	PF01337	Barstar (barnase inhibitor)
YPTB3544	PF00545	ribonuclease
YPTB3545	PF00171	Aldehyde dehydrogenase family
YPTB3546	PF04632	YPTB3546
YPTB3547	PF13437	HlyD family secretion protein
YPTB3547	PF13533	Biotin-lipoyl like
YPTB3548	PF07869	YPTB3548
YPTB3549	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3549	PF03466	LysR substrate binding domain
YPTB3550	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
YPTB3551	PF03538	Salmonella virulence plasmid 28
YPTB3553	PF03534	Salmonella virulence plasmid 65kDa B protein
YPTB3553	PF12255	Insecticide toxin TcdB middle/C-terminal region
YPTB3553	PF12256	Insecticide toxin TcdB middle/N-terminal region
YPTB3554	PF16083	YPTB3554
YPTB3555	PF13539	D-alanyl-D-alanine carboxypeptidase
YPTB3558	PF01523	Putative modulator of DNA gyrase
YPTB3559	PF00795	Carbon-nitrogen hydrolase
YPTB3560	PF13116	YPTB3560
YPTB3560	PF13502	YPTB3560
YPTB3561	PF00575	S1 RNA binding domain
YPTB3561	PF10150	Ribonuclease E/G family
YPTB3562	PF02545	Maf-like protein
YPTB3563	PF04093	YPTB3563
YPTB3564	PF04085	rod shape-determining protein MreC
YPTB3565	PF06723	MreB/Mbl protein
YPTB3566	PF00563	EAL domain
YPTB3566	PF00990	GGDEF domain
YPTB3566	PF17157	YPTB3566
YPTB3567	PF00107	Zinc-binding dehydrogenase
YPTB3567	PF08240	Alcohol dehydrogenase GroES-like domain
YPTB3568	PF00174	Oxidoreductase molybdopterin binding domain
YPTB3569	PF01794	YPTB3569
YPTB3570	PF01220	Dehydroquinase class II
YPTB3571	PF00364	Biotin-requiring enzyme
YPTB3572	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
YPTB3572	PF02785	Biotin carboxylase C-terminal domain
YPTB3572	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
YPTB3573	PF06196	YPTB3573
YPTB3574	PF00474	Sodium:solute symporter family
YPTB3575	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
YPTB3576	PF01207	Dihydrouridine synthase (Dus)
YPTB3577	PF02954	Bacterial regulatory protein, Fis family
YPTB3579	PF00392	Bacterial regulatory proteins, gntR family
YPTB3579	PF07729	FCD domain
YPTB3580	PF07690	Major Facilitator Superfamily
YPTB3581	PF02627	Carboxymuconolactone decarboxylase family
YPTB3582	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
YPTB3582	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
YPTB3583	PF00753	Metallo-beta-lactamase superfamily
YPTB3584	PF05433	YPTB3584
YPTB3585	PF00313	'Cold-shock' DNA-binding domain
YPTB3586	PF00313	'Cold-shock' DNA-binding domain
YPTB3587	PF00313	'Cold-shock' DNA-binding domain
YPTB3589	PF13449	Esterase-like activity of phytase
YPTB3590	PF02798	Glutathione S-transferase, N-terminal domain
YPTB3590	PF13410	Glutathione S-transferase, C-terminal domain
YPTB3591	PF01380	SIS domain
YPTB3592	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB3592	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB3593	PF02653	YPTB3593
YPTB3594	PF02653	YPTB3594
YPTB3595	PF00005	ABC transporter
YPTB3596	PF13407	Periplasmic binding protein domain
YPTB3597	PF03279	YPTB3597
YPTB3599	PF00999	Sodium/hydrogen exchanger family
YPTB3600	PF00860	Permease family
YPTB3601	PF04221	RelB antitoxin
YPTB3602	PF00005	ABC transporter
YPTB3603	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3604	PF00296	Luciferase-like monooxygenase
YPTB3605	PF09084	NMT1/THI5 like
YPTB3606	PF03358	NADPH-dependent FMN reductase
YPTB3607	PF01791	DeoC/LacD family aldolase
YPTB3608	PF00294	pfkB family carbohydrate kinase
YPTB3609	PF05025	RbsD / FucU transport protein family
YPTB3610	PF02311	AraC-like ligand binding domain
YPTB3610	PF12833	Helix-turn-helix domain
YPTB3611	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
YPTB3612	PF01261	Xylose isomerase-like TIM barrel
YPTB3613	PF05954	Phage late control gene D protein (GPD)
YPTB3615	PF03527	YPTB3615
YPTB3615	PF05488	PAAR motif
YPTB3615	PF05593	YPTB3615
YPTB3616	PF08786	Domain of unknown function (DUF1795)
YPTB3617	PF05954	Phage late control gene D protein (GPD)
YPTB3618	PF01381	Helix-turn-helix
YPTB3619	PF08845	YPTB3619
YPTB3621	PF03527	YPTB3621
YPTB3621	PF05488	PAAR motif
YPTB3621	PF05593	YPTB3621
YPTB3622	PF08786	Domain of unknown function (DUF1795)
YPTB3623	PF05954	Phage late control gene D protein (GPD)
YPTB3624	PF06812	YPTB3624
YPTB3624	PF12486	YPTB3624
YPTB3625	PF06744	YPTB3625
YPTB3625	PF06761	YPTB3625
YPTB3625	PF14331	YPTB3625
YPTB3626	PF06812	YPTB3626
YPTB3626	PF16989	YPTB3626
YPTB3627	PF11319	YPTB3627
YPTB3628	PF02954	Bacterial regulatory protein, Fis family
YPTB3629	PF00004	ATPase family associated with various cellular activities (AAA)
YPTB3629	PF07724	AAA domain (Cdc48 subfamily)
YPTB3629	PF10431	C-terminal, D2-small domain, of ClpB protein
YPTB3630	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
YPTB3631	PF05936	YPTB3631
YPTB3632	PF12790	Type VI secretion lipoprotein
YPTB3634	PF06996	YPTB3634
YPTB3635	PF05947	YPTB3635
YPTB3636	PF04965	Gene 25-like lysozyme
YPTB3637	PF05943	YPTB3637
YPTB3638	PF05591	YPTB3638
YPTB3639	PF05638	Protein of unknown function (DUF796)
YPTB3641	PF07148	YPTB3641
YPTB3642	PF02264	LamB porin
YPTB3643	PF00005	ABC transporter
YPTB3643	PF08402	TOBE domain
YPTB3645	PF13416	Bacterial extracellular solute-binding protein
YPTB3646	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3646	PF14785	Maltose transport system permease protein MalF P2 domain
YPTB3647	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3648	PF06146	YPTB3648
YPTB3649	PF00342	Phosphoglucose isomerase
YPTB3650	PF00696	Amino acid kinase family
YPTB3652	PF05860	haemagglutination activity domain
YPTB3652	PF13332	YPTB3652
YPTB3653	PF00809	Pterin binding enzyme
YPTB3653	PF02310	B12 binding domain
YPTB3653	PF02574	Homocysteine S-methyltransferase
YPTB3653	PF02607	B12 binding domain
YPTB3653	PF02965	Vitamin B12 dependent methionine synthase, activation domain
YPTB3654	PF01614	Bacterial transcriptional regulator
YPTB3654	PF09339	IclR helix-turn-helix domain
YPTB3655	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
YPTB3656	PF00463	Isocitrate lyase family
YPTB3657	PF01274	Malate synthase
YPTB3658	PF04204	Homoserine O-succinyltransferase
YPTB3659	PF00132	Bacterial transferase hexapeptide (six repeats)
YPTB3660	PF01488	Shikimate / quinate 5-dehydrogenase
YPTB3660	PF08501	Shikimate dehydrogenase substrate binding domain
YPTB3661	PF01300	Telomere recombination
YPTB3662	PF01396	YPTB3662
YPTB3663	PF04361	YPTB3663
YPTB3664	PF02481	DNA recombination-mediator protein A
YPTB3665	PF01327	Polypeptide deformylase
YPTB3666	PF00551	Formyl transferase
YPTB3666	PF02911	Formyl transferase, C-terminal domain
YPTB3667	PF01029	NusB family
YPTB3667	PF01189	NOL1/NOP2/sun family
YPTB3668	PF02080	TrkA-C domain
YPTB3668	PF02254	TrkA-N domain
YPTB3669	PF01741	Large-conductance mechanosensitive channel, MscL
YPTB3670	PF03889	YPTB3670
YPTB3671	PF13411	MerR HTH family regulatory protein
YPTB3672	PF01196	Ribosomal protein L17
YPTB3673	PF01000	RNA polymerase Rpb3/RpoA insert domain
YPTB3673	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
YPTB3673	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
YPTB3674	PF00163	Ribosomal protein S4/S9 N-terminal domain
YPTB3674	PF01479	S4 domain
YPTB3675	PF00411	Ribosomal protein S11
YPTB3676	PF00416	Ribosomal protein S13/S18
YPTB3677	PF00444	Ribosomal protein L36
YPTB3678	PF00344	SecY translocase
YPTB3679	PF00828	Ribosomal protein L18e/L15
YPTB3680	PF00327	Ribosomal protein L30p/L7e
YPTB3681	PF00333	Ribosomal protein S5, N-terminal domain
YPTB3681	PF03719	Ribosomal protein S5, C-terminal domain
YPTB3682	PF00861	Ribosomal L18p/L5e family
YPTB3683	PF00347	Ribosomal protein L6
YPTB3684	PF00410	Ribosomal protein S8
YPTB3685	PF00253	Ribosomal protein S14p/S29e
YPTB3686	PF00281	Ribosomal protein L5
YPTB3686	PF00673	ribosomal L5P family C-terminus
YPTB3687	PF00467	KOW motif
YPTB3687	PF17136	YPTB3687
YPTB3688	PF00238	Ribosomal protein L14p/L23e
YPTB3689	PF00366	Ribosomal protein S17
YPTB3690	PF00831	Ribosomal L29 protein
YPTB3691	PF00252	Ribosomal protein L16p/L10e
YPTB3692	PF00189	Ribosomal protein S3, C-terminal domain
YPTB3692	PF07650	KH domain
YPTB3693	PF00237	Ribosomal protein L22p/L17e
YPTB3694	PF00203	Ribosomal protein S19
YPTB3695	PF00181	Ribosomal Proteins L2, RNA binding domain
YPTB3695	PF03947	Ribosomal Proteins L2, C-terminal domain
YPTB3696	PF00276	Ribosomal protein L23
YPTB3697	PF00573	Ribosomal protein L4/L1 family
YPTB3698	PF00297	Ribosomal protein L3
YPTB3699	PF00338	Ribosomal protein S10p/S20e
YPTB3700	PF00210	Ferritin-like domain
YPTB3701	PF04324	BFD-like [2Fe-2S] binding domain
YPTB3702	PF00009	Elongation factor Tu GTP binding domain
YPTB3702	PF03143	Elongation factor Tu C-terminal domain
YPTB3702	PF03144	Elongation factor Tu domain 2
YPTB3703	PF00009	Elongation factor Tu GTP binding domain
YPTB3703	PF00679	Elongation factor G C-terminus
YPTB3703	PF03144	Elongation factor Tu domain 2
YPTB3703	PF03764	Elongation factor G, domain IV
YPTB3703	PF14492	Elongation Factor G, domain II
YPTB3704	PF00177	Ribosomal protein S7p/S5e
YPTB3705	PF00164	Ribosomal protein S12/S23
YPTB3706	PF04077	DsrH like protein
YPTB3707	PF02635	DsrE/DsrF-like family
YPTB3708	PF02635	DsrE/DsrF-like family
YPTB3709	PF08348	YPTB3709
YPTB3709	PF13309	YPTB3709
YPTB3710	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPTB3710	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YPTB3711	PF04102	SlyX
YPTB3712	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
YPTB3713	PF09526	YPTB3713
YPTB3714	PF00999	Sodium/hydrogen exchanger family
YPTB3714	PF02254	TrkA-N domain
YPTB3715	PF02525	Flavodoxin-like fold
YPTB3716	PF00005	ABC transporter
YPTB3716	PF12848	ABC transporter
YPTB3717	PF00535	Glycosyl transferase family 2
YPTB3718	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
YPTB3719	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
YPTB3720	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3721	PF00005	ABC transporter
YPTB3722	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
YPTB3723	PF01810	YPTB3723
YPTB3724	PF00561	alpha/beta hydrolase fold
YPTB3725	PF06794	Uncharacterised protein family (UPF0270)
YPTB3726	PF00485	Phosphoribulokinase / Uridine kinase family
YPTB3727	PF06836	YPTB3727
YPTB3728	PF02566	OsmC-like protein
YPTB3729	PF00027	Cyclic nucleotide-binding domain
YPTB3729	PF00325	Bacterial regulatory proteins, crp family
YPTB3730	PF12805	YPTB3730
YPTB3730	PF13515	YPTB3730
YPTB3731	PF00202	Aminotransferase class-III
YPTB3732	PF00117	Glutamine amidotransferase class-I
YPTB3733	PF05872	YPTB3733
YPTB3734	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YPTB3735	PF02056	Family 4 glycosyl hydrolase
YPTB3735	PF11975	Family 4 glycosyl hydrolase C-terminal domain
YPTB3736	PF00356	Bacterial regulatory proteins, lacI family
YPTB3736	PF13377	Periplasmic binding protein-like domain
YPTB3737	PF00593	TonB dependent receptor
YPTB3737	PF07715	TonB-dependent Receptor Plug Domain
YPTB3738	PF07690	Major Facilitator Superfamily
YPTB3739	PF07969	Amidohydrolase family
YPTB3740	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
YPTB3740	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
YPTB3740	PF04324	BFD-like [2Fe-2S] binding domain
YPTB3740	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB3741	PF13806	Rieske-like [2Fe-2S] domain
YPTB3742	PF01226	Formate/nitrite transporter
YPTB3743	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
YPTB3743	PF10414	Sirohaem synthase dimerisation region
YPTB3743	PF13241	Putative NAD(P)-binding
YPTB3743	PF14824	Sirohaem biosynthesis protein central
YPTB3744	PF00579	tRNA synthetases class I (W and Y)
YPTB3745	PF13419	Haloacid dehalogenase-like hydrolase
YPTB3746	PF00834	Ribulose-phosphate 3 epimerase family
YPTB3747	PF02086	D12 class N6 adenine-specific DNA methyltransferase
YPTB3748	PF05036	Sporulation related domain
YPTB3749	PF01761	3-dehydroquinate synthase
YPTB3750	PF01202	Shikimate kinase
YPTB3751	PF00263	YPTB3751
YPTB3751	PF03958	Bacterial type II/III secretion system short domain
YPTB3752	PF10748	YPTB3752
YPTB3754	PF05137	YPTB3754
YPTB3755	PF11104	Type IV pilus assembly protein PilM;
YPTB3756	PF00905	Penicillin binding protein transpeptidase domain
YPTB3756	PF00912	Transglycosylase
YPTB3756	PF17092	YPTB3756
YPTB3757	PF00293	NUDIX domain
YPTB3758	PF07095	Intracellular growth attenuator protein IgaA
YPTB3759	PF13419	Haloacid dehalogenase-like hydrolase
YPTB3760	PF01479	S4 domain
YPTB3761	PF01430	Hsp33 protein
YPTB3762	PF01293	Phosphoenolpyruvate carboxykinase
YPTB3763	PF00512	His Kinase A (phospho-acceptor) domain
YPTB3763	PF00672	HAMP domain
YPTB3763	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB3764	PF00072	Response regulator receiver domain
YPTB3764	PF00486	Transcriptional regulatory protein, C terminal
YPTB3765	PF01272	Transcription elongation factor, GreA/GreB, C-term
YPTB3765	PF03449	Transcription elongation factor, N-terminal
YPTB3766	PF00575	S1 RNA binding domain
YPTB3766	PF09371	Tex-like protein N-terminal domain
YPTB3766	PF12836	Helix-hairpin-helix motif
YPTB3766	PF16921	YPTB3766
YPTB3767	PF04023	FeoA domain
YPTB3768	PF02421	Ferrous iron transport protein B
YPTB3768	PF07664	YPTB3768
YPTB3768	PF07670	Nucleoside recognition
YPTB3769	PF09012	FeoC like transcriptional regulator
YPTB3770	PF07338	Protein of unknown function (DUF1471)
YPTB3771	PF00561	alpha/beta hydrolase fold
YPTB3772	PF00156	Phosphoribosyl transferase domain
YPTB3773	PF01106	NifU-like domain
YPTB3773	PF01521	Iron-sulphur cluster biosynthesis
YPTB3774	PF02446	4-alpha-glucanotransferase
YPTB3775	PF00343	Carbohydrate phosphorylase
YPTB3776	PF00196	Bacterial regulatory proteins, luxR family
YPTB3777	PF00581	Rhodanese-like domain
YPTB3778	PF01694	Rhomboid family
YPTB3778	PF12122	Protein of unknown function (DUF3582)
YPTB3779	PF00455	YPTB3779
YPTB3779	PF08220	DeoR-like helix-turn-helix domain
YPTB3781	PF06092	YPTB3781
YPTB3782	PF01266	FAD dependent oxidoreductase
YPTB3782	PF16901	YPTB3782
YPTB3783	PF00343	Carbohydrate phosphorylase
YPTB3784	PF00534	Glycosyl transferases group 1
YPTB3784	PF08323	Starch synthase catalytic domain
YPTB3785	PF00483	Nucleotidyl transferase
YPTB3786	PF00128	Alpha amylase, catalytic domain
YPTB3786	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YPTB3787	PF00128	Alpha amylase, catalytic domain
YPTB3787	PF02806	Alpha amylase, C-terminal all-beta domain
YPTB3787	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YPTB3788	PF06580	YPTB3788
YPTB3788	PF07694	5TMR of 5TMR-LYT
YPTB3789	PF01476	LysM domain
YPTB3789	PF02369	Bacterial Ig-like domain (group 1)
YPTB3789	PF11924	Protein of unknown function (DUF3442)
YPTB3790	PF01118	Semialdehyde dehydrogenase, NAD binding domain
YPTB3790	PF02774	Semialdehyde dehydrogenase, dimerisation domain
YPTB3791	PF01914	YPTB3791
YPTB3795	PF15538	YPTB3795
YPTB3796	PF01202	Shikimate kinase
YPTB3797	PF02447	YPTB3797
YPTB3798	PF00356	Bacterial regulatory proteins, lacI family
YPTB3798	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
YPTB3799	PF02678	Pirin
YPTB3801	PF00072	Response regulator receiver domain
YPTB3801	PF00486	Transcriptional regulatory protein, C terminal
YPTB3802	PF00294	pfkB family carbohydrate kinase
YPTB3803	PF01116	Fructose-bisphosphate aldolase class-II
YPTB3804	PF07385	Protein of unknown function (DUF1498)
YPTB3805	PF13407	Periplasmic binding protein domain
YPTB3806	PF02653	YPTB3806
YPTB3807	PF00005	ABC transporter
YPTB3808	PF00072	Response regulator receiver domain
YPTB3808	PF00512	His Kinase A (phospho-acceptor) domain
YPTB3808	PF00672	HAMP domain
YPTB3808	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB3808	PF12860	YPTB3808
YPTB3809	PF03486	HI0933-like protein
YPTB3810	PF01384	YPTB3810
YPTB3811	PF10625	YPTB3811
YPTB3812	PF00582	Universal stress protein family
YPTB3813	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YPTB3813	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YPTB3814	PF08548	Peptidase M10 serralysin C terminal
YPTB3815	PF04445	Putative SAM-dependent methyltransferase
YPTB3816	PF01432	Peptidase family M3
YPTB3817	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
YPTB3818	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YPTB3818	PF07992	Pyridine nucleotide-disulphide oxidoreductase
YPTB3819	PF05651	YPTB3819
YPTB3819	PF13556	PucR C-terminal helix-turn-helix domain
YPTB3820	PF02447	YPTB3820
YPTB3821	PF02595	Glycerate kinase family
YPTB3822	PF06092	YPTB3822
YPTB3823	PF11692	YPTB3823
YPTB3824	PF03212	Pertactin
YPTB3824	PF03797	Autotransporter beta-domain
YPTB3825	PF03631	YPTB3825
YPTB3826	PF02611	CDP-diacylglycerol pyrophosphatase
YPTB3827	PF05170	YPTB3827
YPTB3828	PF00563	EAL domain
YPTB3829	PF01361	Tautomerase enzyme
YPTB3830	PF00294	pfkB family carbohydrate kinase
YPTB3831	PF00675	Insulinase (Peptidase family M16)
YPTB3831	PF05193	Peptidase M16 inactive domain
YPTB3832	PF00375	Sodium:dicarboxylate symporter family
YPTB3833	PF00754	F5/8 type C domain
YPTB3834	PF06917	Periplasmic pectate lyase
YPTB3835	PF06178	Oligogalacturonate-specific porin protein (KdgM)
YPTB3836	PF00563	EAL domain
YPTB3836	PF00990	GGDEF domain
YPTB3836	PF17154	YPTB3836
YPTB3837	PF01270	Glycosyl hydrolases family 8
YPTB3838	PF00005	ABC transporter
YPTB3838	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPTB3839	PF00005	ABC transporter
YPTB3839	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
YPTB3840	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3840	PF12911	YPTB3840
YPTB3841	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3842	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
YPTB3843	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
YPTB3843	PF08479	POTRA domain, ShlB-type
YPTB3843	PF17287	YPTB3843
YPTB3844	PF05860	haemagglutination activity domain
YPTB3845	PF07690	Major Facilitator Superfamily
YPTB3846	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB3846	PF05231	YPTB3846
YPTB3846	PF07730	Histidine kinase
YPTB3847	PF00072	Response regulator receiver domain
YPTB3847	PF00196	Bacterial regulatory proteins, luxR family
YPTB3848	PF00884	Sulfatase
YPTB3848	PF08019	YPTB3848
YPTB3849	PF12146	Putative lysophospholipase
YPTB3850	PF00324	Amino acid permease
YPTB3851	PF00221	Aromatic amino acid lyase
YPTB3852	PF01175	Urocanase
YPTB3852	PF17391	YPTB3852
YPTB3852	PF17392	YPTB3852
YPTB3855	PF00892	EamA-like transporter family
YPTB3856	PF13535	ATP-grasp domain
YPTB3857	PF01497	Periplasmic binding protein
YPTB3858	PF01032	FecCD transport family
YPTB3859	PF01032	FecCD transport family
YPTB3860	PF00005	ABC transporter
YPTB3864	PF13356	Domain of unknown function (DUF4102)
YPTB3865	PF13708	YPTB3865
YPTB3866	PF06755	YPTB3866
YPTB3867	PF06154	YagB/YeeU/YfjZ family
YPTB3868	PF04002	RadC-like JAB domain
YPTB3872	PF01695	IstB-like ATP binding protein
YPTB3873	PF11726	YPTB3873
YPTB3875	PF00665	Integrase core domain
YPTB3875	PF02796	Helix-turn-helix domain of resolvase
YPTB3876	PF01695	IstB-like ATP binding protein
YPTB3878	PF01863	Protein of unknown function DUF45
YPTB3879	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
YPTB3879	PF04851	Type III restriction enzyme, res subunit
YPTB3880	PF13310	YPTB3880
YPTB3881	PF01420	Type I restriction modification DNA specificity domain
YPTB3882	PF02384	N-6 DNA Methylase
YPTB3882	PF12161	HsdM N-terminal domain
YPTB3883	PF01420	Type I restriction modification DNA specificity domain
YPTB3884	PF01609	Transposase DDE domain
YPTB3886	PF00589	Phage integrase family
YPTB3886	PF13356	Domain of unknown function (DUF4102)
YPTB3887	PF12833	Helix-turn-helix domain
YPTB3887	PF13377	Periplasmic binding protein-like domain
YPTB3888	PF02653	YPTB3888
YPTB3889	PF00005	ABC transporter
YPTB3890	PF13407	Periplasmic binding protein domain
YPTB3892	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
YPTB3892	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
YPTB3893	PF00419	Fimbrial protein
YPTB3894	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
YPTB3894	PF02753	Pili assembly chaperone PapD, C-terminal domain
YPTB3895	PF00577	Outer membrane usher protein
YPTB3895	PF13953	PapC C-terminal domain
YPTB3895	PF13954	PapC N-terminal domain
YPTB3896	PF00419	Fimbrial protein
YPTB3897	PF01757	YPTB3897
YPTB3898	PF13518	Helix-turn-helix domain
YPTB3899	PF00665	Integrase core domain
YPTB3899	PF13276	YPTB3899
YPTB3900	PF02423	Ornithine cyclodeaminase/mu-crystallin family
YPTB3901	PF00291	Pyridoxal-phosphate dependent enzyme
YPTB3902	PF07676	WD40-like Beta Propeller Repeat
YPTB3902	PF12566	YPTB3902
YPTB3903	PF07119	YPTB3903
YPTB3904	PF00011	Hsp20/alpha crystallin family
YPTB3905	PF00011	Hsp20/alpha crystallin family
YPTB3906	PF02080	TrkA-C domain
YPTB3906	PF06826	YPTB3906
YPTB3907	PF00155	Aminotransferase class I and II
YPTB3909	PF00128	Alpha amylase, catalytic domain
YPTB3910	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YPTB3910	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
YPTB3912	PF00691	OmpA family
YPTB3912	PF13488	YPTB3912
YPTB3913	PF13673	Acetyltransferase (GNAT) domain
YPTB3914	PF03352	Methyladenine glycosylase
YPTB3915	PF02091	Glycyl-tRNA synthetase alpha subunit
YPTB3916	PF02092	YPTB3916
YPTB3916	PF05746	DALR anticodon binding domain
YPTB3917	PF11254	YPTB3917
YPTB3918	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YPTB3918	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
YPTB3918	PF02378	Phosphotransferase system, EIIC
YPTB3919	PF01232	Mannitol dehydrogenase Rossmann domain
YPTB3919	PF08125	Mannitol dehydrogenase C-terminal domain
YPTB3920	PF05068	Mannitol repressor
YPTB3921	PF10928	Protein of unknown function (DUF2810)
YPTB3922	PF10517	YPTB3922
YPTB3924	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
YPTB3924	PF00672	HAMP domain
YPTB3924	PF16591	YPTB3924
YPTB3925	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
YPTB3925	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
YPTB3926	PF02634	FdhD/NarQ family
YPTB3928	PF09163	Formate dehydrogenase N, transmembrane
YPTB3928	PF13247	4Fe-4S dicluster domain
YPTB3929	PF01292	Prokaryotic cytochrome b561
YPTB3930	PF04216	Protein involved in formate dehydrogenase formation
YPTB3931	PF03841	L-seryl-tRNA selenium transferase
YPTB3931	PF12390	YPTB3931
YPTB3932	PF00009	Elongation factor Tu GTP binding domain
YPTB3932	PF09106	Elongation factor SelB, winged helix
YPTB3932	PF09107	Elongation factor SelB, winged helix
YPTB3935	PF13988	YPTB3935
YPTB3936	PF07690	Major Facilitator Superfamily
YPTB3937	PF00665	Integrase core domain
YPTB3937	PF13276	YPTB3937
YPTB3938	PF13518	Helix-turn-helix domain
YPTB3939	PF08282	haloacid dehalogenase-like hydrolase
YPTB3940	PF00204	DNA gyrase B
YPTB3940	PF00986	DNA gyrase B subunit, carboxyl terminus
YPTB3940	PF01751	Toprim domain
YPTB3940	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YPTB3941	PF02463	RecF/RecN/SMC N terminal domain
YPTB3942	PF00712	DNA polymerase III beta subunit, N-terminal domain
YPTB3942	PF02767	DNA polymerase III beta subunit, central domain
YPTB3942	PF02768	DNA polymerase III beta subunit, C-terminal domain
YPTB3943	PF00308	Bacterial dnaA  protein
YPTB3943	PF08299	Bacterial dnaA protein helix-turn-helix
YPTB3943	PF11638	DnaA N-terminal domain
YPTB3945	PF00468	Ribosomal protein L34
YPTB3946	PF00825	Ribonuclease P
YPTB3947	PF01809	YPTB3947
YPTB3948	PF02096	60Kd inner membrane protein
YPTB3948	PF14849	YidC periplasmic domain
YPTB3949	PF01926	50S ribosome-binding GTPase
YPTB3949	PF10396	GTP-binding protein TrmE N-terminus
YPTB3949	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
YPTB3950	PF07055	Enoyl reductase FAD binding domain
YPTB3950	PF12241	Trans-2-enoyl-CoA reductase catalytic region
YPTB3950	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
YPTB3953	PF00860	Permease family
YPTB3954	PF13419	Haloacid dehalogenase-like hydrolase
YPTB3955	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3956	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3957	PF00497	Bacterial extracellular solute-binding proteins, family 3
YPTB3958	PF04519	YPTB3958
YPTB3959	PF01895	PhoU domain
YPTB3960	PF00005	ABC transporter
YPTB3961	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3962	PF00528	Binding-protein-dependent transport system inner membrane component
YPTB3963	PF12849	PBP superfamily domain
YPTB3964	PF01380	SIS domain
YPTB3964	PF13522	Glutamine amidotransferase domain
YPTB3965	PF00132	Bacterial transferase hexapeptide (six repeats)
YPTB3965	PF12804	MobA-like NTP transferase domain
YPTB3966	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
YPTB3966	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
YPTB3967	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPTB3967	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPTB3968	PF00231	ATP synthase
YPTB3969	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
YPTB3969	PF00306	ATP synthase alpha/beta chain, C terminal domain
YPTB3969	PF02874	ATP synthase alpha/beta family, beta-barrel domain
YPTB3970	PF00213	ATP synthase delta (OSCP) subunit
YPTB3971	PF00430	ATP synthase B/B' CF(0)
YPTB3972	PF00137	ATP synthase subunit C
YPTB3973	PF00119	ATP synthase A chain
YPTB3974	PF03899	YPTB3974
YPTB3975	PF02527	rRNA small subunit methyltransferase G
YPTB3976	PF01134	Glucose inhibited division protein A
YPTB3976	PF13932	GidA associated domain 3
pYV0001	PF00069	Protein kinase domain
pYV0001	PF09632	Rac1-binding domain
pYV0003	PF00665	Integrase core domain
pYV0005	PF02387	pYV0005
pYV0007	PF10723	Replication regulatory protein RepB
pYV0008	PF00665	Integrase core domain
pYV0009	PF01527	Transposase
pYV0011	PF01527	Transposase
pYV0013	PF03895	YadA-like C-terminal region
pYV0013	PF05658	Head domain of trimeric autotransporter adhesin
pYV0013	PF05662	Coiled stalk of trimeric autotransporter adhesin
pYV0016	PF01526	pYV0016
pYV0016	PF13700	pYV0016
pYV0017	PF00239	Resolvase, N terminal domain
pYV0017	PF02796	Helix-turn-helix domain of resolvase
pYV0018	PF01527	Transposase
pYV0019	PF13276	pYV0019
pYV0019	PF13683	pYV0019
pYV0020	PF05932	Tir chaperone protein (CesT) family
pYV0021	PF01695	IstB-like ATP binding protein
pYV0022	PF00665	Integrase core domain
pYV0023	PF13683	pYV0023
pYV0024	PF05932	Tir chaperone protein (CesT) family
pYV0025	PF03545	Yersinia virulence determinant (YopE)
pYV0025	PF09020	YopE, N terminal
pYV0026	PF05016	Plasmid stabilisation system protein
pYV0027	PF03693	Uncharacterised protein family (UPF0156)
pYV0031	PF02195	ParB-like nuclease domain
pYV0032	PF00376	MerR family regulatory protein
pYV0032	PF13614	AAA domain
pYV0034	PF13683	pYV0034
pYV0036	PF01527	Transposase
pYV0041	PF03543	Yersinia/Haemophilus virulence surface antigen
pYV0042	PF05932	Tir chaperone protein (CesT) family
pYV0046	PF00872	pYV0046
pYV0047	PF12468	Type III secretion system leucine rich repeat protein
pYV0047	PF13516	Leucine Rich repeat
pYV0051	PF13610	pYV0051
pYV0054	PF05844	YopD protein
pYV0055	PF04888	pYV0055
pYV0056	PF07720	Tetratricopeptide repeat
pYV0057	PF04792	V antigen (LcrV) protein
pYV0058	PF07216	pYV0058
pYV0059	PF09621	pYV0059
pYV0060	PF00771	FHIPEP family
pYV0062	PF09474	pYV0062
pYV0064	PF09059	TyeA
pYV0065	PF07201	HrpJ-like domain
pYV0067	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
pYV0067	PF02874	ATP synthase alpha/beta family, beta-barrel domain
pYV0068	PF07321	Type III secretion protein YscO
pYV0069	PF02120	Flagellar hook-length control protein FliK
pYV0070	PF01052	Surface presentation of antigens (SPOA)
pYV0071	PF00813	pYV0071
pYV0072	PF01313	pYV0072
pYV0073	PF01311	pYV0073
pYV0074	PF01312	FlhB HrpN YscU SpaS Family
pYV0075	PF09619	Type III secretion system lipoprotein chaperone (YscW)
pYV0076	PF02311	AraC-like ligand binding domain
pYV0076	PF12833	Helix-turn-helix domain
pYV0077	PF17551	pYV0077
pYV0078	PF05932	Tir chaperone protein (CesT) family
pYV0079	PF00263	pYV0079
pYV0079	PF03958	Bacterial type II/III secretion system short domain
pYV0080	PF16693	pYV0080
pYV0080	PF16697	pYV0080
pYV0081	PF08988	Protein of unknown function (DUF1895)
pYV0082	PF09392	Type III secretion needle MxiH like
pYV0083	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
pYV0084	PF09025	YopR Core
pYV0085	PF17001	pYV0085
pYV0086	PF01514	Secretory protein of YscJ/FliF family
pYV0087	PF06578	pYV0087
pYV0088	PF02108	pYV0088
pYV0089	PF09013	YopH, N-terminal
pYV0090	PF01527	Transposase
pYV0094	PF00102	Protein-tyrosine phosphatase
pYV0094	PF09013	YopH, N-terminal
pYV0095	PF13683	pYV0095
pYV0098	PF03421	pYV0098
pYptb0001	PF01051	Initiator Replication protein
pYptb0004	PF01464	Transglycosylase SLT domain
pYptb0005	PF04956	pYptb0005
pYptb0006	PF03135	pYptb0006
pYptb0006	PF05101	pYptb0006
pYptb0007	PF07996	Type IV secretion system proteins
pYptb0008	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
pYptb0009	PF06769	Plasmid encoded toxin Txe
pYptb0011	PF04610	pYptb0011
pYptb0012	PF04335	VirB8 protein
pYptb0013	PF03524	Conjugal transfer protein
pYptb0014	PF03743	Bacterial conjugation TrbI-like protein
pYptb0015	PF00437	Type II/IV secretion system protein
pYptb0016	PF13117	pYptb0016
pYptb0018	PF03895	YadA-like C-terminal region
pYptb0018	PF05662	Coiled stalk of trimeric autotransporter adhesin
pYptb0020	PF00816	H-NS histone family
pYptb0029	PF01935	Domain of unknown function DUF87
pYptb0029	PF12696	TraM recognition site of TraD and TraG
pYptb0031	PF01131	DNA topoisomerase
pYptb0031	PF01751	Toprim domain
pYptb0031	PF13342	pYptb0031
pYptb0035	PF08401	pYptb0035
pYptb0037	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
pYptb0038	PF09274	ParG