YPTB0002 SM00344 helix_turn_helix ASNC type YPTB0004 SM00327 von Willebrand factor (vWF) type A domain YPTB0005 SM00382 ATPases associated with a variety of cellular activities YPTB0011 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB0011 SM00895 YPTB0011 YPTB0018 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPTB0018 SM00474 3'-5' exonuclease YPTB0018 SM00475 5'-3' exonuclease YPTB0018 SM00482 DNA polymerase A domain YPTB0021 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB0022 SM00382 ATPases associated with a variety of cellular activities YPTB0022 SM00448 cheY-homologous receiver domain YPTB0023 SM00091 PAS domain YPTB0023 SM00387 Histidine kinase-like ATPases YPTB0023 SM00388 His Kinase A (phosphoacceptor) domain YPTB0024 SM01230 YPTB0024 YPTB0033 SM00487 DEAD-like helicases superfamily YPTB0033 SM00490 helicase superfamily c-terminal domain YPTB0035 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTB0035 SM00954 Region found in RelA / SpoT proteins YPTB0036 SM01409 YPTB0036 YPTB0037 SM00072 Guanylate kinase homologues. YPTB0038 SM00532 Ligase N family YPTB0049 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YPTB0049 SM01232 YPTB0049 YPTB0057 SM00829 Enoylreductase YPTB0061 SM00450 Rhodanese Homology Domain YPTB0066 SM00971 Serine acetyltransferase, N-terminal YPTB0068 SM00342 helix_turn_helix, arabinose operon control protein YPTB0069 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB0069 SM00387 Histidine kinase-like ATPases YPTB0069 SM00388 His Kinase A (phosphoacceptor) domain YPTB0070 SM00448 cheY-homologous receiver domain YPTB0070 SM00862 Transcriptional regulatory protein, C terminal YPTB0090 SM00382 ATPases associated with a variety of cellular activities YPTB0097 SM00382 ATPases associated with a variety of cellular activities YPTB0097 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB0100 SM00354 helix_turn _helix lactose operon repressor YPTB0101 SM00487 DEAD-like helicases superfamily YPTB0101 SM00490 helicase superfamily c-terminal domain YPTB0110 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPTB0115 SM00382 ATPases associated with a variety of cellular activities YPTB0128 SM00382 ATPases associated with a variety of cellular activities YPTB0133 SM00382 ATPases associated with a variety of cellular activities YPTB0165 SM00487 DEAD-like helicases superfamily YPTB0165 SM00490 helicase superfamily c-terminal domain YPTB0167 SM00357 Cold shock protein domain YPTB0167 SM00382 ATPases associated with a variety of cellular activities YPTB0167 SM00959 Rho termination factor, N-terminal domain YPTB0171 SM00984 UDP binding domain YPTB0188 SM01219 YPTB0188 YPTB0202 SM00341 Helicase and RNase D C-terminal YPTB0202 SM00487 DEAD-like helicases superfamily YPTB0202 SM00490 helicase superfamily c-terminal domain YPTB0202 SM00956 YPTB0202 YPTB0221 SM00382 ATPases associated with a variety of cellular activities YPTB0221 SM00962 SRP54-type protein, GTPase domain YPTB0221 SM00963 SRP54-type protein, helical bundle domain YPTB0222 SM00382 ATPases associated with a variety of cellular activities YPTB0229 SM00382 ATPases associated with a variety of cellular activities YPTB0230 SM00382 ATPases associated with a variety of cellular activities YPTB0241 SM00382 ATPases associated with a variety of cellular activities YPTB0245 SM00530 Helix-turn-helix XRE-family like proteins YPTB0262 SM01004 Delta-aminolevulinic acid dehydratase YPTB0263 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPTB0263 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPTB0278 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPTB0278 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPTB0279 SM00649 Ribosomal protein L11/L12 YPTB0284 SM00663 RNA polymerase I subunit A N-terminus YPTB0285 SM00876 Biotin and Thiamin Synthesis associated domain YPTB0297 SM00411 bacterial (prokaryotic) histone like domain YPTB0299 SM01209 YPTB0299 YPTB0299 SM01210 YPTB0299 YPTB0300 SM00798 AICARFT/IMPCHase bienzyme YPTB0300 SM00851 MGS-like domain YPTB0303 SM00382 ATPases associated with a variety of cellular activities YPTB0310 SM00421 helix_turn_helix, Lux Regulon YPTB0310 SM00448 cheY-homologous receiver domain YPTB0311 SM00387 Histidine kinase-like ATPases YPTB0311 SM00388 His Kinase A (phosphoacceptor) domain YPTB0311 SM00448 cheY-homologous receiver domain YPTB0315 SM00342 helix_turn_helix, arabinose operon control protein YPTB0323 SM00382 ATPases associated with a variety of cellular activities YPTB0336 SM00382 ATPases associated with a variety of cellular activities YPTB0344 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB0364 SM00060 Fibronectin type 3 domain YPTB0365 SM00869 Autotransporter beta-domain YPTB0368 SM00563 Phosphate acyltransferases YPTB0374 SM00829 Enoylreductase YPTB0375 SM00382 ATPases associated with a variety of cellular activities YPTB0376 SM01005 Alanine racemase, C-terminal domain YPTB0383 SM01007 Class II Aldolase and Adducin N-terminal domain YPTB0386 SM00342 helix_turn_helix, arabinose operon control protein YPTB0387 SM00342 helix_turn_helix, arabinose operon control protein YPTB0393 SM01276 YPTB0393 YPTB0398 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTB0404 SM00883 Chaperonin 10 Kd subunit YPTB0408 SM00841 Elongation factor P, C-terminal YPTB0408 SM01185 YPTB0408 YPTB0418 SM00479 YPTB0418 YPTB0422 SM00257 Lysin motif YPTB0422 SM00646 YPTB0422 YPTB0423 SM00853 MutL C terminal dimerisation domain YPTB0423 SM01340 YPTB0423 YPTB0427 SM00244 prohibitin homologues YPTB0428 SM00244 prohibitin homologues YPTB0430 SM00788 Adenylosuccinate synthetase YPTB0432 SM00316 Ribosomal protein S1-like RNA-binding domain YPTB0432 SM00357 Cold shock protein domain YPTB0432 SM00955 YPTB0432 YPTB0433 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPTB0450 SM00116 Domain in cystathionine beta-synthase and other proteins. YPTB0450 SM01091 Transporter associated domain YPTB0468 SM00387 Histidine kinase-like ATPases YPTB0468 SM00388 His Kinase A (phosphoacceptor) domain YPTB0469 SM00448 cheY-homologous receiver domain YPTB0469 SM00862 Transcriptional regulatory protein, C terminal YPTB0472 SM01103 YPTB0472 YPTB0474 SM00382 ATPases associated with a variety of cellular activities YPTB0479 SM00316 Ribosomal protein S1-like RNA-binding domain YPTB0479 SM00322 K homology RNA-binding domain YPTB0483 SM01387 YPTB0483 YPTB0484 SM00316 Ribosomal protein S1-like RNA-binding domain YPTB0484 SM00322 K homology RNA-binding domain YPTB0485 SM00028 Tetratricopeptide repeats YPTB0486 SM00487 DEAD-like helicases superfamily YPTB0486 SM00490 helicase superfamily c-terminal domain YPTB0489 SM00530 Helix-turn-helix XRE-family like proteins YPTB0504 SM00382 ATPases associated with a variety of cellular activities YPTB0507 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPTB0508 SM00849 Metallo-beta-lactamase superfamily YPTB0509 SM00072 Guanylate kinase homologues. YPTB0511 SM00382 ATPases associated with a variety of cellular activities YPTB0512 SM00382 ATPases associated with a variety of cellular activities YPTB0517 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB0517 SM00866 YPTB0517 YPTB0520 SM00382 ATPases associated with a variety of cellular activities YPTB0521 SM00382 ATPases associated with a variety of cellular activities YPTB0535 SM00487 DEAD-like helicases superfamily YPTB0541 SM00342 helix_turn_helix, arabinose operon control protein YPTB0548 SM01133 YPTB0548 YPTB0552 SM00382 ATPases associated with a variety of cellular activities YPTB0561 SM00450 Rhodanese Homology Domain YPTB0570 SM00267 diguanylate cyclase YPTB0576 SM00749 bacterial OsmY and nodulation domain YPTB0581 SM01133 YPTB0581 YPTB0582 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YPTB0587 SM00382 ATPases associated with a variety of cellular activities YPTB0588 SM00530 Helix-turn-helix XRE-family like proteins YPTB0590 SM00382 ATPases associated with a variety of cellular activities YPTB0592 SM00267 diguanylate cyclase YPTB0594 SM00831 Cation transporter/ATPase, N-terminus YPTB0598 SM00855 Phosphoglycerate mutase family YPTB0599 SM00342 helix_turn_helix, arabinose operon control protein YPTB0599 SM00871 Bacterial transcription activator, effector binding domain YPTB0601 SM00448 cheY-homologous receiver domain YPTB0601 SM00862 Transcriptional regulatory protein, C terminal YPTB0607 SM00852 Probable molybdopterin binding domain YPTB0612 SM00271 DnaJ molecular chaperone homology domain YPTB0616 SM00904 Riboflavin kinase YPTB0621 SM01321 YPTB0621 YPTB0623 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YPTB0624 SM00851 MGS-like domain YPTB0624 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPTB0633 SM00650 Ribosomal RNA adenine dimethylases YPTB0637 SM00271 DnaJ molecular chaperone homology domain YPTB0647 SM00382 ATPases associated with a variety of cellular activities YPTB0647 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB0658 SM00487 DEAD-like helicases superfamily YPTB0658 SM00490 helicase superfamily c-terminal domain YPTB0659 SM00486 DNA polymerase type-B family YPTB0661 SM00382 ATPases associated with a variety of cellular activities YPTB0671 SM01329 YPTB0671 YPTB0672 SM00917 LeuA allosteric (dimerisation) domain YPTB0677 SM00354 helix_turn _helix lactose operon repressor YPTB0692 SM00842 Cell division protein FtsA YPTB0693 SM00864 Tubulin/FtsZ family, GTPase domain YPTB0693 SM00865 Tubulin/FtsZ family, C-terminal domain YPTB0697 SM00957 SecA DEAD-like domain YPTB0697 SM00958 SecA preprotein cross-linking domain YPTB0699 SM01321 YPTB0699 YPTB0703 SM01240 YPTB0703 YPTB0709 SM00644 YPTB0709 YPTB0712 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB0712 SM00895 YPTB0712 YPTB0724 SM00947 Carbonic anhydrase YPTB0725 SM00382 ATPases associated with a variety of cellular activities YPTB0737 SM00487 DEAD-like helicases superfamily YPTB0737 SM00490 helicase superfamily c-terminal domain YPTB0737 SM00847 Helicase associated domain (HA2) Add an annotation YPTB0739 SM00382 ATPases associated with a variety of cellular activities YPTB0748 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTB0749 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTB0750 SM00073 Histidine Phosphotransfer domain YPTB0750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB0750 SM00387 Histidine kinase-like ATPases YPTB0750 SM00388 His Kinase A (phosphoacceptor) domain YPTB0750 SM00448 cheY-homologous receiver domain YPTB0751 SM00954 Region found in RelA / SpoT proteins YPTB0755 SM01192 YPTB0755 YPTB0755 SM01193 YPTB0755 YPTB0775 SM00257 Lysin motif YPTB0778 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YPTB0778 SM00534 ATPase domain of DNA mismatch repair MUTS family YPTB0780 SM00829 Enoylreductase YPTB0783 SM01120 YPTB0783 YPTB0786 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YPTB0789 SM00062 Bacterial periplasmic substrate-binding proteins YPTB0790 SM01235 YPTB0790 YPTB0801 SM00382 ATPases associated with a variety of cellular activities YPTB0803 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTB0803 SM01134 YPTB0803 YPTB0804 SM01007 Class II Aldolase and Adducin N-terminal domain YPTB0805 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTB0814 SM00382 ATPases associated with a variety of cellular activities YPTB0817 SM00861 Transketolase, pyrimidine binding domain YPTB0823 SM00382 ATPases associated with a variety of cellular activities YPTB0825 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPTB0831 SM01091 Transporter associated domain YPTB0833 SM00382 ATPases associated with a variety of cellular activities YPTB0833 SM00962 SRP54-type protein, GTPase domain YPTB0833 SM00963 SRP54-type protein, helical bundle domain YPTB0840 SM00448 cheY-homologous receiver domain YPTB0840 SM00850 LytTr DNA-binding domain YPTB0842 SM00830 Chorismate mutase type II YPTB0843 SM00830 Chorismate mutase type II YPTB0846 SM00363 S4 RNA-binding domain YPTB0848 SM00382 ATPases associated with a variety of cellular activities YPTB0848 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB0850 SM00155 Phospholipase D. Active site motifs. YPTB0851 SM00881 CoA binding domain YPTB0852 SM01144 YPTB0852 YPTB0854 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPTB0857 SM00347 helix_turn_helix multiple antibiotic resistance protein YPTB0866 SM00062 Bacterial periplasmic substrate-binding proteins YPTB0869 SM00382 ATPases associated with a variety of cellular activities YPTB0874 SM01007 Class II Aldolase and Adducin N-terminal domain YPTB0880 SM00710 Parallel beta-helix repeats YPTB0880 SM00912 haemagglutination activity domain YPTB0889 SM00900 YPTB0889 YPTB0899 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YPTB0904 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPTB0917 SM00448 cheY-homologous receiver domain YPTB0917 SM00862 Transcriptional regulatory protein, C terminal YPTB0918 SM00091 PAS domain YPTB0918 SM00387 Histidine kinase-like ATPases YPTB0918 SM00388 His Kinase A (phosphoacceptor) domain YPTB0922 SM00642 Alpha-amylase domain YPTB0929 SM01323 YPTB0929 YPTB0939 SM00861 Transketolase, pyrimidine binding domain YPTB0943 SM00981 YPTB0943 YPTB0960 SM00382 ATPases associated with a variety of cellular activities YPTB0960 SM00994 ClpX C4-type zinc finger YPTB0960 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB0961 SM00382 ATPases associated with a variety of cellular activities YPTB0961 SM00464 Found in ATP-dependent protease La (LON) YPTB0962 SM00411 bacterial (prokaryotic) histone like domain YPTB0970 SM00344 helix_turn_helix ASNC type YPTB0971 SM00382 ATPases associated with a variety of cellular activities YPTB0972 SM00382 ATPases associated with a variety of cellular activities YPTB0973 SM00938 Nitrogen regulatory protein P-II YPTB0992 SM00382 ATPases associated with a variety of cellular activities YPTB0994 SM00493 YPTB0994 YPTB0995 SM00387 Histidine kinase-like ATPases YPTB1023 SM00422 helix_turn_helix, mercury resistance YPTB1025 SM00244 prohibitin homologues YPTB1027 SM00822 YPTB1027 YPTB1029 SM00382 ATPases associated with a variety of cellular activities YPTB1032 SM01001 AIR carboxylase YPTB1035 SM00840 YPTB1035 YPTB1046 SM00563 Phosphate acyltransferases YPTB1048 SM00195 Dual specificity phosphatase, catalytic domain YPTB1048 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPTB1055 SM01217 YPTB1055 YPTB1058 SM00363 S4 RNA-binding domain YPTB1059 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPTB1061 SM00869 Autotransporter beta-domain YPTB1069 SM01359 YPTB1069 YPTB1069 SM01360 YPTB1069 YPTB1075 SM00382 ATPases associated with a variety of cellular activities YPTB1082 SM00382 ATPases associated with a variety of cellular activities YPTB1086 SM00421 helix_turn_helix, Lux Regulon YPTB1088 SM00357 Cold shock protein domain YPTB1091 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB1094 SM00936 Penicillin-binding protein 5, C-terminal domain YPTB1105 SM00382 ATPases associated with a variety of cellular activities YPTB1108 SM00062 Bacterial periplasmic substrate-binding proteins YPTB1110 SM00116 Domain in cystathionine beta-synthase and other proteins. YPTB1110 SM01091 Transporter associated domain YPTB1113 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB1123 SM01081 Putative carbohydrate binding domain YPTB1133 SM00382 ATPases associated with a variety of cellular activities YPTB1147 SM00861 Transketolase, pyrimidine binding domain YPTB1150 SM00881 CoA binding domain YPTB1166 SM00855 Phosphoglycerate mutase family YPTB1173 SM00382 ATPases associated with a variety of cellular activities YPTB1178 SM00382 ATPases associated with a variety of cellular activities YPTB1182 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB1182 SM00876 Biotin and Thiamin Synthesis associated domain YPTB1186 SM00382 ATPases associated with a variety of cellular activities YPTB1187 SM00487 DEAD-like helicases superfamily YPTB1187 SM00490 helicase superfamily c-terminal domain YPTB1190 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB1204 SM00091 PAS domain YPTB1204 SM00387 Histidine kinase-like ATPases YPTB1204 SM00388 His Kinase A (phosphoacceptor) domain YPTB1205 SM00382 ATPases associated with a variety of cellular activities YPTB1205 SM00448 cheY-homologous receiver domain YPTB1211 SM00382 ATPases associated with a variety of cellular activities YPTB1214 SM00487 DEAD-like helicases superfamily YPTB1214 SM00490 helicase superfamily c-terminal domain YPTB1219 SM01118 YPTB1219 YPTB1220 SM00507 HNH nucleases YPTB1223 SM00382 ATPases associated with a variety of cellular activities YPTB1232 SM00382 ATPases associated with a variety of cellular activities YPTB1235 SM00450 Rhodanese Homology Domain YPTB1238 SM00382 ATPases associated with a variety of cellular activities YPTB1245 SM00487 DEAD-like helicases superfamily YPTB1245 SM00488 YPTB1245 YPTB1245 SM00491 YPTB1245 YPTB1246 SM01060 YPTB1246 YPTB1250 SM00852 Probable molybdopterin binding domain YPTB1256 SM00434 DNA Topoisomerase IV YPTB1257 SM00387 Histidine kinase-like ATPases YPTB1257 SM00388 His Kinase A (phosphoacceptor) domain YPTB1257 SM00448 cheY-homologous receiver domain YPTB1258 SM00421 helix_turn_helix, Lux Regulon YPTB1258 SM00448 cheY-homologous receiver domain YPTB1259 SM00387 Histidine kinase-like ATPases YPTB1265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTB1265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB1268 SM00530 Helix-turn-helix XRE-family like proteins YPTB1272 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTB1272 SM01134 YPTB1272 YPTB1300 SM00487 DEAD-like helicases superfamily YPTB1300 SM00490 helicase superfamily c-terminal domain YPTB1301 SM00363 S4 RNA-binding domain YPTB1304 SM00382 ATPases associated with a variety of cellular activities YPTB1308 SM00052 Putative diguanylate phosphodiesterase YPTB1310 SM00014 Acid phosphatase homologues YPTB1311 SM00833 Cobalamin synthesis protein cobW C-terminal domain YPTB1313 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB1313 SM00895 YPTB1313 YPTB1316 SM00841 Elongation factor P, C-terminal YPTB1316 SM01185 YPTB1316 YPTB1326 SM00382 ATPases associated with a variety of cellular activities YPTB1332 SM00862 Transcriptional regulatory protein, C terminal YPTB1337 SM00518 AP endonuclease family 2 YPTB1343 SM00382 ATPases associated with a variety of cellular activities YPTB1349 SM00382 ATPases associated with a variety of cellular activities YPTB1349 SM00930 YPTB1349 YPTB1351 SM00936 Penicillin-binding protein 5, C-terminal domain YPTB1353 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTB1353 SM01134 YPTB1353 YPTB1354 SM01133 YPTB1354 YPTB1355 SM00014 Acid phosphatase homologues YPTB1362 SM00382 ATPases associated with a variety of cellular activities YPTB1367 SM00062 Bacterial periplasmic substrate-binding proteins YPTB1367 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPTB1368 SM00244 prohibitin homologues YPTB1371 SM00382 ATPases associated with a variety of cellular activities YPTB1377 SM00062 Bacterial periplasmic substrate-binding proteins YPTB1377 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPTB1378 SM00382 ATPases associated with a variety of cellular activities YPTB1379 SM00830 Chorismate mutase type II YPTB1391 SM00382 ATPases associated with a variety of cellular activities YPTB1392 SM00357 Cold shock protein domain YPTB1394 SM00382 ATPases associated with a variety of cellular activities YPTB1394 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB1395 SM00316 Ribosomal protein S1-like RNA-binding domain YPTB1397 SM00382 ATPases associated with a variety of cellular activities YPTB1398 SM00382 ATPases associated with a variety of cellular activities YPTB1400 SM00344 helix_turn_helix ASNC type YPTB1401 SM00843 YPTB1401 YPTB1403 SM00382 ATPases associated with a variety of cellular activities YPTB1411 SM00870 YPTB1411 YPTB1417 SM00316 Ribosomal protein S1-like RNA-binding domain YPTB1418 SM00411 bacterial (prokaryotic) histone like domain YPTB1419 SM00849 Metallo-beta-lactamase superfamily YPTB1420 SM00382 ATPases associated with a variety of cellular activities YPTB1422 SM01150 YPTB1422 YPTB1423 SM00357 Cold shock protein domain YPTB1433 SM00849 Metallo-beta-lactamase superfamily YPTB1442 SM00981 YPTB1442 YPTB1443 SM00382 ATPases associated with a variety of cellular activities YPTB1449 SM00825 Beta-ketoacyl synthase YPTB1459 SM00851 MGS-like domain YPTB1461 SM00881 CoA binding domain YPTB1462 SM00992 Hemimethylated DNA-binding protein YccV like YPTB1463 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPTB1473 SM00825 Beta-ketoacyl synthase YPTB1481 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPTB1489 SM00382 ATPases associated with a variety of cellular activities YPTB1489 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB1495 SM00257 Lysin motif YPTB1508 SM00382 ATPases associated with a variety of cellular activities YPTB1511 SM00852 Probable molybdopterin binding domain YPTB1513 SM00382 ATPases associated with a variety of cellular activities YPTB1517 SM00829 Enoylreductase YPTB1523 SM00382 ATPases associated with a variety of cellular activities YPTB1526 SM00919 Malic enzyme, NAD binding domain YPTB1526 SM01274 YPTB1526 YPTB1539 SM01091 Transporter associated domain YPTB1543 SM01006 Siderophore biosynthesis protein domain YPTB1545 SM00382 ATPases associated with a variety of cellular activities YPTB1553 SM01350 YPTB1553 YPTB1554 SM01321 YPTB1554 YPTB1566 SM00382 ATPases associated with a variety of cellular activities YPTB1572 SM00634 Bacterial Ig-like domain (group 1) YPTB1577 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPTB1586 SM00382 ATPases associated with a variety of cellular activities YPTB1595 SM00822 YPTB1595 YPTB1595 SM00823 Phosphopantetheine attachment site YPTB1595 SM00824 Thioesterase YPTB1595 SM00825 Beta-ketoacyl synthase YPTB1595 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPTB1596 SM00823 Phosphopantetheine attachment site YPTB1597 SM00342 helix_turn_helix, arabinose operon control protein YPTB1598 SM00382 ATPases associated with a variety of cellular activities YPTB1599 SM00382 ATPases associated with a variety of cellular activities YPTB1603 SM00421 helix_turn_helix, Lux Regulon YPTB1603 SM00448 cheY-homologous receiver domain YPTB1610 SM00354 helix_turn _helix lactose operon repressor YPTB1613 SM00090 RIO-like kinase YPTB1614 SM00382 ATPases associated with a variety of cellular activities YPTB1615 SM00342 helix_turn_helix, arabinose operon control protein YPTB1624 SM00357 Cold shock protein domain YPTB1628 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPTB1628 SM00091 PAS domain YPTB1628 SM00267 diguanylate cyclase YPTB1635 SM01091 Transporter associated domain YPTB1636 SM00347 helix_turn_helix multiple antibiotic resistance protein YPTB1646 SM00903 Flavin reductase like domain YPTB1652 SM00487 DEAD-like helicases superfamily YPTB1652 SM00490 helicase superfamily c-terminal domain YPTB1654 SM01022 YPTB1654 YPTB1668 SM00634 Bacterial Ig-like domain (group 1) YPTB1671 SM00858 YPTB1671 YPTB1680 SM00047 Lysozyme subfamily 2 YPTB1684 SM01007 Class II Aldolase and Adducin N-terminal domain YPTB1687 SM00382 ATPases associated with a variety of cellular activities YPTB1700 SM00382 ATPases associated with a variety of cellular activities YPTB1708 SM00478 endonuclease III YPTB1709 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTB1710 SM00342 helix_turn_helix, arabinose operon control protein YPTB1718 SM00062 Bacterial periplasmic substrate-binding proteins YPTB1718 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPTB1720 SM00382 ATPases associated with a variety of cellular activities YPTB1735 SM00421 helix_turn_helix, Lux Regulon YPTB1735 SM00448 cheY-homologous receiver domain YPTB1736 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPTB1736 SM00465 GIY-YIG type nucleases (URI domain) YPTB1790 SM00530 Helix-turn-helix XRE-family like proteins YPTB1795 SM00843 YPTB1795 YPTB1802 SM00990 YPTB1802 YPTB1809 SM00382 ATPases associated with a variety of cellular activities YPTB1864 SM00479 YPTB1864 YPTB1870 SM00530 Helix-turn-helix XRE-family like proteins YPTB1871 SM00974 YPTB1871 YPTB1910 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB1910 SM00866 YPTB1910 YPTB1916 SM00382 ATPases associated with a variety of cellular activities YPTB1922 SM00062 Bacterial periplasmic substrate-binding proteins YPTB1922 SM00387 Histidine kinase-like ATPases YPTB1922 SM00388 His Kinase A (phosphoacceptor) domain YPTB1922 SM00448 cheY-homologous receiver domain YPTB1923 SM00421 helix_turn_helix, Lux Regulon YPTB1923 SM00448 cheY-homologous receiver domain YPTB1936 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTB1936 SM01134 YPTB1936 YPTB1944 SM00382 ATPases associated with a variety of cellular activities YPTB1957 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB1957 SM00387 Histidine kinase-like ATPases YPTB1958 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB1967 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB1967 SM00866 YPTB1967 YPTB1981 SM00671 Sel1-like repeats. YPTB1982 SM00671 Sel1-like repeats. YPTB1992 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB1992 SM00387 Histidine kinase-like ATPases YPTB1992 SM00388 His Kinase A (phosphoacceptor) domain YPTB1993 SM00448 cheY-homologous receiver domain YPTB1993 SM00862 Transcriptional regulatory protein, C terminal YPTB2001 SM01400 YPTB2001 YPTB2005 SM00937 YPTB2005 YPTB2010 SM01321 YPTB2010 YPTB2016 SM00382 ATPases associated with a variety of cellular activities YPTB2019 SM00481 DNA polymerase alpha chain like domain YPTB2028 SM00912 haemagglutination activity domain YPTB2029 SM00836 DALR anticodon binding domain YPTB2029 SM01016 Arginyl tRNA synthetase N terminal dom YPTB2040 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPTB2041 SM00382 ATPases associated with a variety of cellular activities YPTB2043 SM00382 ATPases associated with a variety of cellular activities YPTB2045 SM00257 Lysin motif YPTB2054 SM00487 DEAD-like helicases superfamily YPTB2054 SM00491 YPTB2054 YPTB2058 SM00341 Helicase and RNase D C-terminal YPTB2058 SM00474 3'-5' exonuclease YPTB2072 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB2080 SM00763 PrkA AAA domain YPTB2083 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTB2087 SM00870 YPTB2087 YPTB2091 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPTB2091 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPTB2091 SM00493 YPTB2091 YPTB2099 SM00448 cheY-homologous receiver domain YPTB2100 SM00984 UDP binding domain YPTB2101 SM00528 Domain in histone-like proteins of HNS family YPTB2108 SM00382 ATPases associated with a variety of cellular activities YPTB2109 SM00382 ATPases associated with a variety of cellular activities YPTB2111 SM00155 Phospholipase D. Active site motifs. YPTB2124 SM00749 bacterial OsmY and nodulation domain YPTB2133 SM00481 DNA polymerase alpha chain like domain YPTB2135 SM00363 S4 RNA-binding domain YPTB2137 SM00822 YPTB2137 YPTB2140 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPTB2140 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPTB2140 SM00493 YPTB2140 YPTB2145 SM00014 Acid phosphatase homologues YPTB2147 SM00028 Tetratricopeptide repeats YPTB2149 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YPTB2152 SM01007 Class II Aldolase and Adducin N-terminal domain YPTB2157 SM00357 Cold shock protein domain YPTB2157 SM00955 YPTB2157 YPTB2160 SM00478 endonuclease III YPTB2160 SM00525 YPTB2160 YPTB2162 SM00900 YPTB2162 YPTB2164 SM00342 helix_turn_helix, arabinose operon control protein YPTB2169 SM00382 ATPases associated with a variety of cellular activities YPTB2171 SM00382 ATPases associated with a variety of cellular activities YPTB2175 SM00382 ATPases associated with a variety of cellular activities YPTB2177 SM00342 helix_turn_helix, arabinose operon control protein YPTB2183 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB2183 SM00866 YPTB2183 YPTB2196 SM00382 ATPases associated with a variety of cellular activities YPTB2206 SM00382 ATPases associated with a variety of cellular activities YPTB2210 SM00382 ATPases associated with a variety of cellular activities YPTB2220 SM00098 Alkaline phosphatase homologues YPTB2222 SM00100 Cyclic nucleotide-monophosphate binding domain YPTB2222 SM00419 helix_turn_helix, cAMP Regulatory protein YPTB2225 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YPTB2225 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YPTB2230 SM00448 cheY-homologous receiver domain YPTB2230 SM00862 Transcriptional regulatory protein, C terminal YPTB2231 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB2231 SM00387 Histidine kinase-like ATPases YPTB2231 SM00388 His Kinase A (phosphoacceptor) domain YPTB2234 SM00867 YceI-like domain YPTB2238 SM00020 Trypsin-like serine protease YPTB2239 SM00530 Helix-turn-helix XRE-family like proteins YPTB2241 SM00382 ATPases associated with a variety of cellular activities YPTB2241 SM00487 DEAD-like helicases superfamily YPTB2241 SM00490 helicase superfamily c-terminal domain YPTB2241 SM00847 Helicase associated domain (HA2) Add an annotation YPTB2253 SM00890 Domain of unknown function YPTB2256 SM00422 helix_turn_helix, mercury resistance YPTB2260 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPTB2262 SM00091 PAS domain YPTB2262 SM00382 ATPases associated with a variety of cellular activities YPTB2264 SM00953 YPTB2264 YPTB2271 SM00382 ATPases associated with a variety of cellular activities YPTB2275 SM00382 ATPases associated with a variety of cellular activities YPTB2276 SM00382 ATPases associated with a variety of cellular activities YPTB2283 SM00363 S4 RNA-binding domain YPTB2288 SM00347 helix_turn_helix multiple antibiotic resistance protein YPTB2296 SM00479 YPTB2296 YPTB2300 SM00354 helix_turn _helix lactose operon repressor YPTB2312 SM00382 ATPases associated with a variety of cellular activities YPTB2331 SM00382 ATPases associated with a variety of cellular activities YPTB2335 SM00411 bacterial (prokaryotic) histone like domain YPTB2336 SM00873 B3/4 domain YPTB2336 SM00874 tRNA synthetase B5 domain YPTB2336 SM00896 Ferredoxin-fold anticodon binding domain YPTB2342 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPTB2348 SM00382 ATPases associated with a variety of cellular activities YPTB2361 SM00382 ATPases associated with a variety of cellular activities YPTB2366 SM00644 YPTB2366 YPTB2367 SM00346 helix_turn_helix isocitrate lyase regulation YPTB2376 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTB2376 SM00245 tail specific protease YPTB2377 SM00945 ProQ/FINO family YPTB2381 SM00972 Spore Coat Protein U domain YPTB2382 SM00972 Spore Coat Protein U domain YPTB2383 SM00972 Spore Coat Protein U domain YPTB2386 SM00972 Spore Coat Protein U domain YPTB2388 SM01022 YPTB2388 YPTB2392 SM01005 Alanine racemase, C-terminal domain YPTB2395 SM00644 YPTB2395 YPTB2397 SM00448 cheY-homologous receiver domain YPTB2398 SM00448 cheY-homologous receiver domain YPTB2399 SM00138 Methyltransferase, chemotaxis proteins YPTB2400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTB2400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB2400 SM00319 Homologues of the ligand binding domain of Tar YPTB2401 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTB2401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB2401 SM00319 Homologues of the ligand binding domain of Tar YPTB2404 SM00260 Two component signalling adaptor domain YPTB2405 SM00073 Histidine Phosphotransfer domain YPTB2405 SM00260 Two component signalling adaptor domain YPTB2405 SM00387 Histidine kinase-like ATPases YPTB2405 SM01231 YPTB2405 YPTB2410 SM00831 Cation transporter/ATPase, N-terminus YPTB2412 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTB2412 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB2412 SM00319 Homologues of the ligand binding domain of Tar YPTB2414 SM00357 Cold shock protein domain YPTB2415 SM01038 Beta galactosidase small chain YPTB2416 SM00829 Enoylreductase YPTB2418 SM00344 helix_turn_helix ASNC type YPTB2424 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPTB2424 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTB2426 SM00354 helix_turn _helix lactose operon repressor YPTB2427 SM01329 YPTB2427 YPTB2434 SM00448 cheY-homologous receiver domain YPTB2434 SM00862 Transcriptional regulatory protein, C terminal YPTB2435 SM00387 Histidine kinase-like ATPases YPTB2435 SM00388 His Kinase A (phosphoacceptor) domain YPTB2436 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPTB2441 SM00382 ATPases associated with a variety of cellular activities YPTB2443 SM00487 DEAD-like helicases superfamily YPTB2443 SM00490 helicase superfamily c-terminal domain YPTB2443 SM00982 YPTB2443 YPTB2443 SM01058 CarD-like/TRCF domain YPTB2469 SM00825 Beta-ketoacyl synthase YPTB2471 SM00822 YPTB2471 YPTB2472 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPTB2478 SM00363 S4 RNA-binding domain YPTB2479 SM00316 Ribosomal protein S1-like RNA-binding domain YPTB2486 SM00421 helix_turn_helix, Lux Regulon YPTB2488 SM00450 Rhodanese Homology Domain YPTB2497 SM01091 Transporter associated domain YPTB2500 SM00421 helix_turn_helix, Lux Regulon YPTB2519 SM00354 helix_turn _helix lactose operon repressor YPTB2521 SM00382 ATPases associated with a variety of cellular activities YPTB2527 SM00912 haemagglutination activity domain YPTB2532 SM01329 YPTB2532 YPTB2534 SM00354 helix_turn _helix lactose operon repressor YPTB2536 SM00382 ATPases associated with a variety of cellular activities YPTB2538 SM00829 Enoylreductase YPTB2548 SM00062 Bacterial periplasmic substrate-binding proteins YPTB2548 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPTB2550 SM00382 ATPases associated with a variety of cellular activities YPTB2551 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPTB2551 SM00091 PAS domain YPTB2551 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTB2557 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPTB2569 SM00354 helix_turn _helix lactose operon repressor YPTB2582 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTB2582 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPTB2583 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPTB2590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTB2599 SM00354 helix_turn _helix lactose operon repressor YPTB2605 SM00052 Putative diguanylate phosphodiesterase YPTB2607 SM00382 ATPases associated with a variety of cellular activities YPTB2610 SM00062 Bacterial periplasmic substrate-binding proteins YPTB2619 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPTB2621 SM00342 helix_turn_helix, arabinose operon control protein YPTB2626 SM00825 Beta-ketoacyl synthase YPTB2634 SM00463 Small MutS-related domain YPTB2635 SM00855 Phosphoglycerate mutase family YPTB2649 SM00382 ATPases associated with a variety of cellular activities YPTB2671 SM00382 ATPases associated with a variety of cellular activities YPTB2671 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB2680 SM00421 helix_turn_helix, Lux Regulon YPTB2684 SM00382 ATPases associated with a variety of cellular activities YPTB2688 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTB2711 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPTB2711 SM00292 breast cancer carboxy-terminal domain YPTB2711 SM00532 Ligase N family YPTB2712 SM00771 ZipA, C-terminal domain (FtsZ-binding) YPTB2718 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB2718 SM00387 Histidine kinase-like ATPases YPTB2718 SM00388 His Kinase A (phosphoacceptor) domain YPTB2719 SM00448 cheY-homologous receiver domain YPTB2719 SM00862 Transcriptional regulatory protein, C terminal YPTB2721 SM00382 ATPases associated with a variety of cellular activities YPTB2722 SM00450 Rhodanese Homology Domain YPTB2727 SM00327 von Willebrand factor (vWF) type A domain YPTB2728 SM00387 Histidine kinase-like ATPases YPTB2728 SM00388 His Kinase A (phosphoacceptor) domain YPTB2729 SM00448 cheY-homologous receiver domain YPTB2729 SM00862 Transcriptional regulatory protein, C terminal YPTB2732 SM00382 ATPases associated with a variety of cellular activities YPTB2740 SM00364 Leucine-rich repeats, bacterial type YPTB2740 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPTB2742 SM01130 YPTB2742 YPTB2746 SM00869 Autotransporter beta-domain YPTB2756 SM00919 Malic enzyme, NAD binding domain YPTB2756 SM01274 YPTB2756 YPTB2760 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTB2763 SM00421 helix_turn_helix, Lux Regulon YPTB2763 SM00448 cheY-homologous receiver domain YPTB2770 SM00382 ATPases associated with a variety of cellular activities YPTB2783 SM01130 YPTB2783 YPTB2799 SM00382 ATPases associated with a variety of cellular activities YPTB2805 SM00924 MgtE intracellular N domain YPTB2811 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB2812 SM00382 ATPases associated with a variety of cellular activities YPTB2817 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB2817 SM00387 Histidine kinase-like ATPases YPTB2817 SM00388 His Kinase A (phosphoacceptor) domain YPTB2818 SM00448 cheY-homologous receiver domain YPTB2818 SM00862 Transcriptional regulatory protein, C terminal YPTB2821 SM00046 Diacylglycerol kinase catalytic domain (presumed) YPTB2833 SM00116 Domain in cystathionine beta-synthase and other proteins. YPTB2833 SM01240 YPTB2833 YPTB2838 SM00564 beta-propeller repeat YPTB2842 SM00530 Helix-turn-helix XRE-family like proteins YPTB2843 SM00028 Tetratricopeptide repeats YPTB2845 SM00562 YPTB2845 YPTB2846 SM00247 Beta/gamma crystallins YPTB2848 SM00869 Autotransporter beta-domain YPTB2849 SM00869 Autotransporter beta-domain YPTB2850 SM00869 Autotransporter beta-domain YPTB2856 SM00271 DnaJ molecular chaperone homology domain YPTB2872 SM00938 Nitrogen regulatory protein P-II YPTB2874 SM00382 ATPases associated with a variety of cellular activities YPTB2874 SM00448 cheY-homologous receiver domain YPTB2876 SM00387 Histidine kinase-like ATPases YPTB2876 SM00388 His Kinase A (phosphoacceptor) domain YPTB2879 SM01211 YPTB2879 YPTB2880 SM00062 Bacterial periplasmic substrate-binding proteins YPTB2890 SM00358 Double-stranded RNA binding motif YPTB2890 SM00535 Ribonuclease III family YPTB2900 SM00487 DEAD-like helicases superfamily YPTB2900 SM00490 helicase superfamily c-terminal domain YPTB2901 SM00248 ankyrin repeats YPTB2904 SM00986 Uracil DNA glycosylase superfamily YPTB2904 SM00987 UreE urease accessory protein, C-terminal domain YPTB2909 SM00797 Allophanate hydrolase subunit 2 YPTB2910 SM00796 Allophanate hydrolase subunit 1 YPTB2919 SM00387 Histidine kinase-like ATPases YPTB2919 SM00388 His Kinase A (phosphoacceptor) domain YPTB2920 SM00448 cheY-homologous receiver domain YPTB2920 SM00862 Transcriptional regulatory protein, C terminal YPTB2928 SM00342 helix_turn_helix, arabinose operon control protein YPTB2941 SM00988 UreE urease accessory protein, N-terminal domain YPTB2945 SM00382 ATPases associated with a variety of cellular activities YPTB2946 SM00382 ATPases associated with a variety of cellular activities YPTB2950 SM00357 Cold shock protein domain YPTB2959 SM00382 ATPases associated with a variety of cellular activities YPTB2964 SM00479 YPTB2964 YPTB2967 SM00849 Metallo-beta-lactamase superfamily YPTB2968 SM00257 Lysin motif YPTB2973 SM00382 ATPases associated with a variety of cellular activities YPTB2973 SM00930 YPTB2973 YPTB2981 SM01322 YPTB2981 YPTB2985 SM00977 TilS substrate C-terminal domain YPTB2988 SM00481 DNA polymerase alpha chain like domain YPTB2994 SM00935 Outer membrane protein (OmpH-like) YPTB2996 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTB3005 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTB3014 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPTB3014 SM00475 5'-3' exonuclease YPTB3021 SM00925 MltA specific insert domain YPTB3022 SM00646 YPTB3022 YPTB3035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YPTB3037 SM00927 DNA mismatch repair enzyme MutH YPTB3042 SM00563 Phosphate acyltransferases YPTB3044 SM00354 helix_turn _helix lactose operon repressor YPTB3049 SM00849 Metallo-beta-lactamase superfamily YPTB3051 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTB3051 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB3051 SM00319 Homologues of the ligand binding domain of Tar YPTB3053 SM00862 Transcriptional regulatory protein, C terminal YPTB3064 SM00382 ATPases associated with a variety of cellular activities YPTB3068 SM00947 Carbonic anhydrase YPTB3072 SM00869 Autotransporter beta-domain YPTB3075 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTB3075 SM01134 YPTB3075 YPTB3091 SM00354 helix_turn _helix lactose operon repressor YPTB3094 SM00354 helix_turn _helix lactose operon repressor YPTB3102 SM00382 ATPases associated with a variety of cellular activities YPTB3103 SM00382 ATPases associated with a variety of cellular activities YPTB3122 SM00778 Zinc-binding domain of primase-helicase YPTB3122 SM00885 D5 N terminal like YPTB3123 SM00530 Helix-turn-helix XRE-family like proteins YPTB3125 SM00530 Helix-turn-helix XRE-family like proteins YPTB3130 SM00530 Helix-turn-helix XRE-family like proteins YPTB3136 SM00479 YPTB3136 YPTB3170 SM00387 Histidine kinase-like ATPases YPTB3170 SM00388 His Kinase A (phosphoacceptor) domain YPTB3171 SM00448 cheY-homologous receiver domain YPTB3171 SM00862 Transcriptional regulatory protein, C terminal YPTB3185 SM01011 Aminopeptidase P, N-terminal domain YPTB3197 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTB3198 SM00861 Transketolase, pyrimidine binding domain YPTB3201 SM01321 YPTB3201 YPTB3204 SM00731 SprT homologues. YPTB3209 SM00732 Likely ribonuclease with RNase H fold. YPTB3212 SM00382 ATPases associated with a variety of cellular activities YPTB3216 SM01152 YPTB3216 YPTB3218 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB3224 SM00478 endonuclease III YPTB3224 SM00525 YPTB3224 YPTB3230 SM00382 ATPases associated with a variety of cellular activities YPTB3246 SM00382 ATPases associated with a variety of cellular activities YPTB3246 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB3259 SM00421 helix_turn_helix, Lux Regulon YPTB3264 SM01006 Siderophore biosynthesis protein domain YPTB3270 SM00354 helix_turn _helix lactose operon repressor YPTB3285 SM00869 Autotransporter beta-domain YPTB3286 SM00869 Autotransporter beta-domain YPTB3290 SM00382 ATPases associated with a variety of cellular activities YPTB3291 SM00382 ATPases associated with a variety of cellular activities YPTB3297 SM00823 Phosphopantetheine attachment site YPTB3297 SM00825 Beta-ketoacyl synthase YPTB3301 SM00364 Leucine-rich repeats, bacterial type YPTB3302 SM00364 Leucine-rich repeats, bacterial type YPTB3303 SM00869 Autotransporter beta-domain YPTB3308 SM00052 Putative diguanylate phosphodiesterase YPTB3308 SM00091 PAS domain YPTB3308 SM00267 diguanylate cyclase YPTB3327 SM00862 Transcriptional regulatory protein, C terminal YPTB3341 SM00858 YPTB3341 YPTB3345 SM00382 ATPases associated with a variety of cellular activities YPTB3350 SM00382 ATPases associated with a variety of cellular activities YPTB3365 SM00060 Fibronectin type 3 domain YPTB3365 SM00636 YPTB3365 YPTB3366 SM00060 Fibronectin type 3 domain YPTB3366 SM00495 Chitin-binding domain type 3 YPTB3386 SM00342 helix_turn_helix, arabinose operon control protein YPTB3389 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB3391 SM00563 Phosphate acyltransferases YPTB3392 SM00434 DNA Topoisomerase IV YPTB3395 SM00387 Histidine kinase-like ATPases YPTB3395 SM00433 TopoisomeraseII YPTB3409 SM01118 YPTB3409 YPTB3410 SM00287 Bacterial SH3 domain homologues YPTB3411 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTB3413 SM00905 Dihydroneopterin aldolase YPTB3414 SM01207 YPTB3414 YPTB3417 SM00400 zinc finger YPTB3417 SM00493 YPTB3417 YPTB3417 SM00766 DNA primase DnaG DnaB-binding YPTB3439 SM01217 YPTB3439 YPTB3444 SM00354 helix_turn _helix lactose operon repressor YPTB3446 SM00382 ATPases associated with a variety of cellular activities YPTB3449 SM00869 Autotransporter beta-domain YPTB3460 SM00912 haemagglutination activity domain YPTB3462 SM00327 von Willebrand factor (vWF) type A domain YPTB3464 SM00327 von Willebrand factor (vWF) type A domain YPTB3465 SM00327 von Willebrand factor (vWF) type A domain YPTB3467 SM00220 Serine/Threonine protein kinases, catalytic domain YPTB3471 SM00869 Autotransporter beta-domain YPTB3476 SM00858 YPTB3476 YPTB3480 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB3480 SM00895 YPTB3480 YPTB3496 SM00749 bacterial OsmY and nodulation domain YPTB3500 SM00073 Histidine Phosphotransfer domain YPTB3500 SM00091 PAS domain YPTB3500 SM00387 Histidine kinase-like ATPases YPTB3500 SM00388 His Kinase A (phosphoacceptor) domain YPTB3500 SM00448 cheY-homologous receiver domain YPTB3501 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTB3511 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTB3512 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTB3519 SM00382 ATPases associated with a variety of cellular activities YPTB3521 SM00116 Domain in cystathionine beta-synthase and other proteins. YPTB3525 SM00382 ATPases associated with a variety of cellular activities YPTB3535 SM00354 helix_turn _helix lactose operon repressor YPTB3537 SM00642 Alpha-amylase domain YPTB3561 SM00316 Ribosomal protein S1-like RNA-binding domain YPTB3566 SM00052 Putative diguanylate phosphodiesterase YPTB3566 SM00267 diguanylate cyclase YPTB3567 SM00829 Enoylreductase YPTB3572 SM00878 Biotin carboxylase C-terminal domain YPTB3579 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTB3579 SM00895 YPTB3579 YPTB3583 SM00849 Metallo-beta-lactamase superfamily YPTB3585 SM00357 Cold shock protein domain YPTB3586 SM00357 Cold shock protein domain YPTB3587 SM00357 Cold shock protein domain YPTB3595 SM00382 ATPases associated with a variety of cellular activities YPTB3602 SM00382 ATPases associated with a variety of cellular activities YPTB3605 SM00062 Bacterial periplasmic substrate-binding proteins YPTB3607 SM01133 YPTB3607 YPTB3610 SM00342 helix_turn_helix, arabinose operon control protein YPTB3618 SM00530 Helix-turn-helix XRE-family like proteins YPTB3629 SM00382 ATPases associated with a variety of cellular activities YPTB3629 SM01086 C-terminal, D2-small domain, of ClpB protein YPTB3643 SM00382 ATPases associated with a variety of cellular activities YPTB3652 SM00912 haemagglutination activity domain YPTB3653 SM01018 B12 binding domain YPTB3654 SM00346 helix_turn_helix isocitrate lyase regulation YPTB3671 SM00422 helix_turn_helix, mercury resistance YPTB3673 SM00662 RNA polymerases D YPTB3674 SM00363 S4 RNA-binding domain YPTB3674 SM01390 YPTB3674 YPTB3687 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPTB3688 SM01374 YPTB3688 YPTB3692 SM00322 K homology RNA-binding domain YPTB3695 SM01382 YPTB3695 YPTB3695 SM01383 YPTB3695 YPTB3699 SM01403 YPTB3699 YPTB3703 SM00838 Elongation factor G C-terminus YPTB3703 SM00889 Elongation factor G, domain IV YPTB3716 SM00382 ATPases associated with a variety of cellular activities YPTB3721 SM00382 ATPases associated with a variety of cellular activities YPTB3722 SM00062 Bacterial periplasmic substrate-binding proteins YPTB3729 SM00100 Cyclic nucleotide-monophosphate binding domain YPTB3729 SM00419 helix_turn_helix, cAMP Regulatory protein YPTB3736 SM00354 helix_turn _helix lactose operon repressor YPTB3760 SM00363 S4 RNA-binding domain YPTB3763 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB3763 SM00387 Histidine kinase-like ATPases YPTB3763 SM00388 His Kinase A (phosphoacceptor) domain YPTB3764 SM00448 cheY-homologous receiver domain YPTB3764 SM00862 Transcriptional regulatory protein, C terminal YPTB3766 SM00316 Ribosomal protein S1-like RNA-binding domain YPTB3766 SM00732 Likely ribonuclease with RNase H fold. YPTB3767 SM00899 YPTB3767 YPTB3776 SM00421 helix_turn_helix, Lux Regulon YPTB3777 SM00450 Rhodanese Homology Domain YPTB3779 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTB3779 SM01134 YPTB3779 YPTB3786 SM00642 Alpha-amylase domain YPTB3787 SM00642 Alpha-amylase domain YPTB3789 SM00257 Lysin motif YPTB3789 SM00634 Bacterial Ig-like domain (group 1) YPTB3790 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPTB3798 SM00354 helix_turn _helix lactose operon repressor YPTB3801 SM00448 cheY-homologous receiver domain YPTB3801 SM00862 Transcriptional regulatory protein, C terminal YPTB3807 SM00382 ATPases associated with a variety of cellular activities YPTB3808 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB3808 SM00387 Histidine kinase-like ATPases YPTB3808 SM00388 His Kinase A (phosphoacceptor) domain YPTB3808 SM00448 cheY-homologous receiver domain YPTB3813 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPTB3814 SM00235 Zinc-dependent metalloprotease YPTB3824 SM00869 Autotransporter beta-domain YPTB3828 SM00052 Putative diguanylate phosphodiesterase YPTB3836 SM00052 Putative diguanylate phosphodiesterase YPTB3836 SM00267 diguanylate cyclase YPTB3838 SM00382 ATPases associated with a variety of cellular activities YPTB3839 SM00382 ATPases associated with a variety of cellular activities YPTB3844 SM00912 haemagglutination activity domain YPTB3846 SM00387 Histidine kinase-like ATPases YPTB3847 SM00421 helix_turn_helix, Lux Regulon YPTB3847 SM00448 cheY-homologous receiver domain YPTB3860 SM00382 ATPases associated with a variety of cellular activities YPTB3876 SM00382 ATPases associated with a variety of cellular activities YPTB3879 SM00487 DEAD-like helicases superfamily YPTB3887 SM00342 helix_turn_helix, arabinose operon control protein YPTB3889 SM00382 ATPases associated with a variety of cellular activities YPTB3909 SM00642 Alpha-amylase domain YPTB3924 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTB3924 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTB3924 SM01358 YPTB3924 YPTB3940 SM00387 Histidine kinase-like ATPases YPTB3940 SM00433 TopoisomeraseII YPTB3942 SM00480 DNA polymerase III beta subunit YPTB3943 SM00382 ATPases associated with a variety of cellular activities YPTB3943 SM00760 Bacterial dnaA protein helix-turn-helix domain YPTB3947 SM01234 YPTB3947 YPTB3957 SM00062 Bacterial periplasmic substrate-binding proteins YPTB3960 SM00382 ATPases associated with a variety of cellular activities YPTB3967 SM00382 ATPases associated with a variety of cellular activities YPTB3976 SM01228 YPTB3976 pYV0001 SM00220 Serine/Threonine protein kinases, catalytic domain pYV0017 SM00857 Resolvase, N terminal domain pYV0031 SM00470 ParB-like nuclease domain pYV0047 SM00364 Leucine-rich repeats, bacterial type pYV0067 SM00382 ATPases associated with a variety of cellular activities pYV0076 SM00342 helix_turn_helix, arabinose operon control protein pYV0094 SM00194 Protein tyrosine phosphatase, catalytic domain pYV0094 SM00404 Protein tyrosine phosphatase, catalytic domain motif pYptb0020 SM00528 Domain in histone-like proteins of HNS family pYptb0031 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain pYptb0031 SM00437 Bacterial DNA topoisomerase I DNA-binding domain pYptb0031 SM00493 pYptb0031