locus-tag class description YPTS_0001 PF00308 Bacterial dnaA protein YPTS_0001 PF08299 Bacterial dnaA protein helix-turn-helix YPTS_0001 PF11638 DnaA N-terminal domain YPTS_0002 PF02767 DNA polymerase III beta subunit, central domain YPTS_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain YPTS_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain YPTS_0003 PF02463 RecF/RecN/SMC N terminal domain YPTS_0004 PF00986 DNA gyrase B subunit, carboxyl terminus YPTS_0004 PF18053 DNA gyrase B subunit insert domain YPTS_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_0004 PF01751 Toprim domain YPTS_0004 PF00204 DNA gyrase B YPTS_0007 PF13333 Integrase core domain YPTS_0007 PF00665 Integrase core domain YPTS_0007 PF13276 HTH-like domain YPTS_0009 PF07690 Major Facilitator Superfamily YPTS_0013 PF00872 Transposase, Mutator family YPTS_0014 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPTS_0015 PF12804 MobA-like NTP transferase domain YPTS_0016 PF06288 Protein of unknown function (DUF1040) YPTS_0017 PF01636 Phosphotransferase enzyme family YPTS_0018 PF01323 DSBA-like thioredoxin domain YPTS_0019 PF00476 DNA polymerase family A YPTS_0019 PF01612 3'-5' exonuclease YPTS_0019 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPTS_0019 PF01367 5'-3' exonuclease, C-terminal SAM fold YPTS_0020 PF01926 50S ribosome-binding GTPase YPTS_0021 PF04220 Der GTPase activator (YihI) YPTS_0022 PF04055 Radical SAM superfamily YPTS_0022 PF06969 HemN C-terminal domain YPTS_0023 PF02954 Bacterial regulatory protein, Fis family YPTS_0023 PF00158 Sigma-54 interaction domain YPTS_0023 PF00072 Response regulator receiver domain YPTS_0024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_0024 PF00512 His Kinase A (phospho-acceptor) domain YPTS_0024 PF00989 PAS fold YPTS_0025 PF00120 Glutamine synthetase, catalytic domain YPTS_0025 PF03951 Glutamine synthetase, beta-Grasp domain YPTS_0027 PF13419 Haloacid dehalogenase-like hydrolase YPTS_0028 PF03631 Virulence factor BrkB YPTS_0029 PF02580 D-Tyr-tRNA(Tyr) deacylase YPTS_0030 PF09500 Putative thioesterase (yiiD_Cterm) YPTS_0030 PF00583 Acetyltransferase (GNAT) family YPTS_0031 PF05170 AsmA family YPTS_0032 PF00860 Permease family YPTS_0033 PF03616 Sodium/glutamate symporter YPTS_0034 PF17191 RecG wedge domain YPTS_0034 PF00271 Helicase conserved C-terminal domain YPTS_0034 PF00270 DEAD/DEAH box helicase YPTS_0035 PF12105 SpoU, rRNA methylase, C-terminal YPTS_0035 PF00588 SpoU rRNA Methylase family YPTS_0036 PF13291 ACT domain YPTS_0036 PF04607 Region found in RelA / SpoT proteins YPTS_0036 PF02824 TGS domain YPTS_0037 PF01192 RNA polymerase Rpb6 YPTS_0038 PF00625 Guanylate kinase YPTS_0039 PF03120 NAD-dependent DNA ligase OB-fold domain YPTS_0039 PF01653 NAD-dependent DNA ligase adenylation domain YPTS_0040 PF03458 UPF0126 domain YPTS_0042 PF08340 Domain of unknown function (DUF1732) YPTS_0042 PF03755 YicC-like family, N-terminal region YPTS_0043 PF01138 3' exoribonuclease family, domain 1 YPTS_0043 PF03725 3' exoribonuclease family, domain 2 YPTS_0044 PF00156 Phosphoribosyl transferase domain YPTS_0045 PF00440 Bacterial regulatory proteins, tetR family YPTS_0046 PF00692 dUTPase YPTS_0047 PF02441 Flavoprotein YPTS_0047 PF04127 DNA / pantothenate metabolism flavoprotein YPTS_0048 PF04002 RadC-like JAB domain YPTS_0049 PF00830 Ribosomal L28 family YPTS_0050 PF00471 Ribosomal protein L33 YPTS_0051 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPTS_0051 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPTS_0051 PF06827 Zinc finger found in FPG and IleRS YPTS_0052 PF01467 Cytidylyltransferase-like YPTS_0053 PF00535 Glycosyl transferase family 2 YPTS_0054 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPTS_0055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTS_0056 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTS_0057 PF01370 NAD dependent epimerase/dehydratase family YPTS_0058 PF00155 Aminotransferase class I and II YPTS_0059 PF00107 Zinc-binding dehydrogenase YPTS_0059 PF08240 Alcohol dehydrogenase GroES-like domain YPTS_0060 PF04748 Divergent polysaccharide deacetylase YPTS_0061 PF01551 Peptidase family M23 YPTS_0062 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPTS_0062 PF01676 Metalloenzyme superfamily YPTS_0063 PF00581 Rhodanese-like domain YPTS_0064 PF00462 Glutaredoxin YPTS_0065 PF02556 Preprotein translocase subunit SecB YPTS_0066 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPTS_0066 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPTS_0067 PF00132 Bacterial transferase hexapeptide (six repeats) YPTS_0067 PF06426 Serine acetyltransferase, N-terminal YPTS_0068 PF00588 SpoU rRNA Methylase family YPTS_0069 PF02805 Metal binding domain of Ada YPTS_0069 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTS_0069 PF12833 Helix-turn-helix domain YPTS_0069 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPTS_0070 PF16527 Two-component sensor protein CpxA, periplasmic domain YPTS_0070 PF00672 HAMP domain YPTS_0070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_0070 PF00512 His Kinase A (phospho-acceptor) domain YPTS_0071 PF00486 Transcriptional regulatory protein, C terminal YPTS_0071 PF00072 Response regulator receiver domain YPTS_0072 PF07813 LTXXQ motif family protein YPTS_0074 PF04754 Putative transposase, YhgA-like YPTS_0076 PF01545 Cation efflux family YPTS_0076 PF16916 Dimerisation domain of Zinc Transporter YPTS_0077 PF00365 Phosphofructokinase YPTS_0081 PF00939 Sodium:sulfate symporter transmembrane region YPTS_0082 PF03737 Aldolase/RraA YPTS_0083 PF02585 GlcNAc-PI de-N-acetylase YPTS_0084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_0084 PF03466 LysR substrate binding domain YPTS_0085 PF00121 Triosephosphate isomerase YPTS_0086 PF07305 Protein of unknown function (DUF1454) YPTS_0087 PF05656 Protein of unknown function (DUF805) YPTS_0088 PF00175 Oxidoreductase NAD-binding domain YPTS_0088 PF00970 Oxidoreductase FAD-binding domain YPTS_0089 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPTS_0090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_0090 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTS_0091 PF00230 Major intrinsic protein YPTS_0092 PF06005 Cell division protein ZapB YPTS_0093 PF00005 ABC transporter YPTS_0093 PF00664 ABC transporter transmembrane region YPTS_0093 PF03412 Peptidase C39 family YPTS_0094 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_0094 PF00529 HlyD membrane-fusion protein of T1SS YPTS_0097 PF03737 Aldolase/RraA YPTS_0098 PF01040 UbiA prenyltransferase family YPTS_0099 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_0099 PF07724 AAA domain (Cdc48 subfamily) YPTS_0099 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_0100 PF00227 Proteasome subunit YPTS_0101 PF05036 Sporulation related domain YPTS_0102 PF00356 Bacterial regulatory proteins, lacI family YPTS_0104 PF00271 Helicase conserved C-terminal domain YPTS_0104 PF18074 Primosomal protein N C-terminal domain YPTS_0104 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPTS_0104 PF00270 DEAD/DEAH box helicase YPTS_0104 PF17764 3′ DNA-binding domain (3′BD) YPTS_0105 PF01197 Ribosomal protein L31 YPTS_0106 PF05360 yiaA/B two helix domain YPTS_0107 PF01340 Met Apo-repressor, MetJ YPTS_0108 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTS_0109 PF03447 Homoserine dehydrogenase, NAD binding domain YPTS_0109 PF00742 Homoserine dehydrogenase YPTS_0109 PF00696 Amino acid kinase family YPTS_0110 PF02219 Methylenetetrahydrofolate reductase YPTS_0113 PF00311 Phosphoenolpyruvate carboxylase YPTS_0114 PF01546 Peptidase family M20/M25/M40 YPTS_0114 PF07687 Peptidase dimerisation domain YPTS_0115 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTS_0115 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTS_0117 PF00696 Amino acid kinase family YPTS_0118 PF14698 Argininosuccinate lyase C-terminal YPTS_0118 PF00206 Lyase YPTS_0119 PF00593 TonB dependent receptor YPTS_0119 PF07715 TonB-dependent Receptor Plug Domain YPTS_0121 PF00664 ABC transporter transmembrane region YPTS_0121 PF00005 ABC transporter YPTS_0122 PF00529 HlyD membrane-fusion protein of T1SS YPTS_0123 PF03544 Gram-negative bacterial TonB protein C-terminal YPTS_0124 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTS_0124 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_0125 PF00462 Glutaredoxin YPTS_0125 PF08534 Redoxin YPTS_0126 PF03466 LysR substrate binding domain YPTS_0126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_0127 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTS_0127 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_0129 PF00440 Bacterial regulatory proteins, tetR family YPTS_0130 PF07226 Protein of unknown function (DUF1422) YPTS_0131 PF05958 tRNA (Uracil-5-)-methyltransferase YPTS_0132 PF07715 TonB-dependent Receptor Plug Domain YPTS_0132 PF00593 TonB dependent receptor YPTS_0133 PF01177 Asp/Glu/Hydantoin racemase YPTS_0136 PF13407 Periplasmic binding protein domain YPTS_0137 PF00005 ABC transporter YPTS_0138 PF02653 Branched-chain amino acid transport system / permease component YPTS_0139 PF02653 Branched-chain amino acid transport system / permease component YPTS_0140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_0140 PF03466 LysR substrate binding domain YPTS_0141 PF04219 Protein of unknown function, DUF YPTS_0142 PF01078 Magnesium chelatase, subunit ChlI YPTS_0142 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPTS_0143 PF00205 Thiamine pyrophosphate enzyme, central domain YPTS_0143 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTS_0143 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTS_0145 PF01063 Amino-transferase class IV YPTS_0146 PF00920 Dehydratase family YPTS_0147 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_0147 PF00585 C-terminal regulatory domain of Threonine dehydratase YPTS_0153 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_0153 PF03466 LysR substrate binding domain YPTS_0154 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPTS_0154 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPTS_0158 PF01320 Colicin immunity protein / pyocin immunity protein YPTS_0159 PF06958 S-type Pyocin YPTS_0160 PF01320 Colicin immunity protein / pyocin immunity protein YPTS_0161 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 YPTS_0161 PF03515 Colicin-like bacteriocin tRNase domain YPTS_0162 PF01320 Colicin immunity protein / pyocin immunity protein YPTS_0167 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_0167 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_0169 PF00577 Outer membrane usher protein YPTS_0169 PF13953 PapC C-terminal domain YPTS_0169 PF13954 PapC N-terminal domain YPTS_0170 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_0170 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_0175 PF13361 UvrD-like helicase C-terminal domain YPTS_0175 PF00580 UvrD/REP helicase N-terminal domain YPTS_0176 PF02541 Ppx/GppA phosphatase family YPTS_0177 PF00271 Helicase conserved C-terminal domain YPTS_0177 PF00270 DEAD/DEAH box helicase YPTS_0178 PF00085 Thioredoxin YPTS_0179 PF07498 Rho termination factor, N-terminal domain YPTS_0179 PF07497 Rho termination factor, RNA-binding domain YPTS_0179 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTS_0180 PF00953 Glycosyl transferase family 4 YPTS_0181 PF02706 Chain length determinant protein YPTS_0182 PF02350 UDP-N-acetylglucosamine 2-epimerase YPTS_0183 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPTS_0183 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPTS_0183 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPTS_0184 PF16363 GDP-mannose 4,6 dehydratase YPTS_0185 PF00483 Nucleotidyl transferase YPTS_0187 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTS_0188 PF01943 Polysaccharide biosynthesis protein YPTS_0189 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPTS_0190 PF06899 WzyE protein, O-antigen assembly polymerase YPTS_0191 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPTS_0192 PF00324 Amino acid permease YPTS_0193 PF07719 Tetratricopeptide repeat YPTS_0193 PF07219 HemY protein N-terminus YPTS_0194 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPTS_0195 PF02602 Uroporphyrinogen-III synthase HemD YPTS_0196 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPTS_0196 PF03900 Porphobilinogen deaminase, C-terminal domain YPTS_0197 PF01295 Adenylate cyclase, class-I YPTS_0197 PF12633 Adenylate cyclase NT domain YPTS_0199 PF00872 Transposase, Mutator family YPTS_0201 PF01491 Frataxin-like domain YPTS_0202 PF13627 Prokaryotic lipoprotein-attachment site YPTS_0203 PF01678 Diaminopimelate epimerase YPTS_0204 PF04340 Protein of unknown function, DUF484 YPTS_0205 PF00589 Phage integrase family YPTS_0205 PF02899 Phage integrase, N-terminal SAM-like domain YPTS_0206 PF13419 Haloacid dehalogenase-like hydrolase YPTS_0207 PF00580 UvrD/REP helicase N-terminal domain YPTS_0207 PF13361 UvrD-like helicase C-terminal domain YPTS_0210 PF09370 Phosphoenolpyruvate hydrolase-like YPTS_0213 PF01544 CorA-like Mg2+ transporter protein YPTS_0214 PF00892 EamA-like transporter family YPTS_0215 PF03061 Thioesterase superfamily YPTS_0216 PF02253 Phospholipase A1 YPTS_0217 PF09382 RQC domain YPTS_0217 PF16124 RecQ zinc-binding YPTS_0217 PF00570 HRDC domain YPTS_0217 PF00271 Helicase conserved C-terminal domain YPTS_0217 PF00270 DEAD/DEAH box helicase YPTS_0218 PF01810 LysE type translocator YPTS_0219 PF01810 LysE type translocator YPTS_0220 PF12146 Serine aminopeptidase, S33 YPTS_0223 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTS_0224 PF04324 BFD-like [2Fe-2S] binding domain YPTS_0224 PF01266 FAD dependent oxidoreductase YPTS_0225 PF00890 FAD binding domain YPTS_0226 PF02754 Cysteine-rich domain YPTS_0226 PF13183 4Fe-4S dicluster domain YPTS_0227 PF08786 DcrB YPTS_0228 PF02592 Putative vitamin uptake transporter YPTS_0229 PF01206 Sulfurtransferase TusA YPTS_0230 PF00403 Heavy-metal-associated domain YPTS_0231 PF07947 YhhN family YPTS_0234 PF06611 Protein of unknown function (DUF1145) YPTS_0236 PF02881 SRP54-type protein, helical bundle domain YPTS_0236 PF00448 SRP54-type protein, GTPase domain YPTS_0236 PF02881 SRP54-type protein, helical bundle domain YPTS_0236 PF00448 SRP54-type protein, GTPase domain YPTS_0237 PF00005 ABC transporter YPTS_0238 PF02687 FtsX-like permease family YPTS_0238 PF18075 FtsX extracellular domain YPTS_0239 PF00140 Sigma-70 factor, region 1.2 YPTS_0239 PF04542 Sigma-70 region 2 YPTS_0239 PF04545 Sigma-70, region 4 YPTS_0240 PF12568 Acetyltransferase (GNAT) domain, PanZ YPTS_0241 PF13458 Periplasmic binding protein YPTS_0242 PF02653 Branched-chain amino acid transport system / permease component YPTS_0243 PF02653 Branched-chain amino acid transport system / permease component YPTS_0243 PF11862 Domain of unknown function (DUF3382) YPTS_0244 PF00005 ABC transporter YPTS_0244 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPTS_0245 PF00005 ABC transporter YPTS_0255 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_0256 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_0257 PF00005 ABC transporter YPTS_0257 PF17912 MalK OB fold domain YPTS_0258 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTS_0259 PF03547 Membrane transport protein YPTS_0262 PF00892 EamA-like transporter family YPTS_0263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_0263 PF03466 LysR substrate binding domain YPTS_0264 PF08267 Cobalamin-independent synthase, N-terminal domain YPTS_0264 PF01717 Cobalamin-independent synthase, Catalytic domain YPTS_0265 PF01738 Dienelactone hydrolase family YPTS_0266 PF01048 Phosphorylase superfamily YPTS_0268 PF13722 5TM C-terminal transporter carbon starvation CstA YPTS_0268 PF02554 Carbon starvation protein CstA YPTS_0269 PF09335 SNARE associated Golgi protein YPTS_0270 PF02646 RmuC family YPTS_0271 PF01209 ubiE/COQ5 methyltransferase family YPTS_0272 PF02036 SCP-2 sterol transfer family YPTS_0273 PF03109 ABC1 family YPTS_0274 PF02416 mttA/Hcf106 family YPTS_0276 PF00902 Sec-independent protein translocase protein (TatC) YPTS_0277 PF01026 TatD related DNase YPTS_0278 PF00490 Delta-aminolevulinic acid dehydratase YPTS_0279 PF02357 Transcription termination factor nusG YPTS_0280 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPTS_0281 PF00175 Oxidoreductase NAD-binding domain YPTS_0281 PF00970 Oxidoreductase FAD-binding domain YPTS_0282 PF00108 Thiolase, N-terminal domain YPTS_0282 PF02803 Thiolase, C-terminal domain YPTS_0283 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPTS_0283 PF00378 Enoyl-CoA hydratase/isomerase YPTS_0283 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPTS_0284 PF00557 Metallopeptidase family M24 YPTS_0285 PF01205 Uncharacterized protein family UPF0029 YPTS_0285 PF09186 Domain of unknown function (DUF1949) YPTS_0286 PF02386 Cation transport protein YPTS_0287 PF12724 Flavodoxin domain YPTS_0290 PF01565 FAD binding domain YPTS_0290 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPTS_0291 PF02237 Biotin protein ligase C terminal domain YPTS_0291 PF03099 Biotin/lipoate A/B protein ligase family YPTS_0291 PF08279 HTH domain YPTS_0292 PF00485 Phosphoribulokinase / Uridine kinase family YPTS_0293 PF13673 Acetyltransferase (GNAT) domain YPTS_0296 PF03143 Elongation factor Tu C-terminal domain YPTS_0296 PF00009 Elongation factor Tu GTP binding domain YPTS_0296 PF03144 Elongation factor Tu domain 2 YPTS_0297 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPTS_0298 PF00467 KOW motif YPTS_0298 PF02357 Transcription termination factor nusG YPTS_0299 PF00298 Ribosomal protein L11, RNA binding domain YPTS_0299 PF03946 Ribosomal protein L11, N-terminal domain YPTS_0300 PF00687 Ribosomal protein L1p/L10e family YPTS_0301 PF00466 Ribosomal protein L10 YPTS_0302 PF00542 Ribosomal protein L7/L12 C-terminal domain YPTS_0302 PF16320 Ribosomal protein L7/L12 dimerisation domain YPTS_0304 PF04563 RNA polymerase beta subunit YPTS_0304 PF04565 RNA polymerase Rpb2, domain 3 YPTS_0304 PF10385 RNA polymerase beta subunit external 1 domain YPTS_0304 PF00562 RNA polymerase Rpb2, domain 6 YPTS_0304 PF04560 RNA polymerase Rpb2, domain 7 YPTS_0304 PF04561 RNA polymerase Rpb2, domain 2 YPTS_0305 PF04997 RNA polymerase Rpb1, domain 1 YPTS_0305 PF00623 RNA polymerase Rpb1, domain 2 YPTS_0305 PF05000 RNA polymerase Rpb1, domain 4 YPTS_0305 PF04983 RNA polymerase Rpb1, domain 3 YPTS_0305 PF04998 RNA polymerase Rpb1, domain 5 YPTS_0306 PF06968 Biotin and Thiamin Synthesis associated domain YPTS_0306 PF04055 Radical SAM superfamily YPTS_0307 PF05690 Thiazole biosynthesis protein ThiG YPTS_0309 PF00899 ThiF family YPTS_0310 PF02581 Thiamine monophosphate synthase YPTS_0311 PF13667 ThiC-associated domain YPTS_0311 PF01964 Radical SAM ThiC family YPTS_0312 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPTS_0313 PF00293 NUDIX domain YPTS_0313 PF09297 NADH pyrophosphatase zinc ribbon domain YPTS_0315 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPTS_0316 PF04493 Endonuclease V YPTS_0317 PF04222 Protein of unknown function (DUF416) YPTS_0318 PF00216 Bacterial DNA-binding protein YPTS_0319 PF07356 Protein of unknown function (DUF1481) YPTS_0320 PF02843 Phosphoribosylglycinamide synthetase, C domain YPTS_0320 PF02844 Phosphoribosylglycinamide synthetase, N domain YPTS_0320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPTS_0321 PF02142 MGS-like domain YPTS_0321 PF01808 AICARFT/IMPCHase bienzyme YPTS_0325 PF01527 Transposase YPTS_0326 PF13683 Integrase core domain YPTS_0326 PF13276 HTH-like domain YPTS_0327 PF01695 IstB-like ATP binding protein YPTS_0328 PF00665 Integrase core domain YPTS_0328 PF02796 Helix-turn-helix domain of resolvase YPTS_0330 PF00474 Sodium:solute symporter family YPTS_0331 PF04341 Protein of unknown function, DUF485 YPTS_0332 PF13193 AMP-binding enzyme C-terminal domain YPTS_0332 PF00501 AMP-binding enzyme YPTS_0332 PF16177 Acetyl-coenzyme A synthetase N-terminus YPTS_0333 PF00375 Sodium:dicarboxylate symporter family YPTS_0334 PF00196 Bacterial regulatory proteins, luxR family YPTS_0334 PF00072 Response regulator receiver domain YPTS_0335 PF00072 Response regulator receiver domain YPTS_0335 PF00512 His Kinase A (phospho-acceptor) domain YPTS_0335 PF00672 HAMP domain YPTS_0335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPTS_0335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_0335 PF01627 Hpt domain YPTS_0339 PF12833 Helix-turn-helix domain YPTS_0339 PF14525 AraC-binding-like domain YPTS_0343 PF01514 Secretory protein of YscJ/FliF family YPTS_0346 PF00771 FHIPEP family YPTS_0347 PF18269 T3SS EscN ATPase C-terminal domain YPTS_0347 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTS_0350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTS_0351 PF00813 FliP family YPTS_0352 PF01313 Bacterial export proteins, family 3 YPTS_0353 PF01311 Bacterial export proteins, family 1 YPTS_0354 PF01312 FlhB HrpN YscU SpaS Family YPTS_0355 PF04143 Sulphur transport YPTS_0356 PF01206 Sulfurtransferase TusA YPTS_0357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_0357 PF03466 LysR substrate binding domain YPTS_0358 PF03222 Tryptophan/tyrosine permease family YPTS_0359 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTS_0360 PF00005 ABC transporter YPTS_0361 PF01032 FecCD transport family YPTS_0362 PF01497 Periplasmic binding protein YPTS_0363 PF05171 Haemin-degrading HemS.ChuX domain YPTS_0364 PF07715 TonB-dependent Receptor Plug Domain YPTS_0364 PF00593 TonB dependent receptor YPTS_0365 PF10636 Hemin uptake protein hemP YPTS_0366 PF13460 NAD(P)H-binding YPTS_0367 PF06228 Haem utilisation ChuX/HutX YPTS_0368 PF04055 Radical SAM superfamily YPTS_0372 PF15608 PELOTA RNA binding domain YPTS_0372 PF11202 Phosphoribosyl transferase (PRTase) YPTS_0376 PF02342 TerD domain YPTS_0377 PF02342 TerD domain YPTS_0378 PF05099 Tellurite resistance protein TerB YPTS_0379 PF03741 Integral membrane protein TerC family YPTS_0380 PF02342 TerD domain YPTS_0381 PF02342 TerD domain YPTS_0383 PF13953 PapC C-terminal domain YPTS_0383 PF13954 PapC N-terminal domain YPTS_0383 PF00577 Outer membrane usher protein YPTS_0384 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_0387 PF08031 Berberine and berberine like YPTS_0387 PF01565 FAD binding domain YPTS_0388 PF12951 Passenger-associated-transport-repeat YPTS_0389 PF04345 Chorismate lyase YPTS_0390 PF01040 UbiA prenyltransferase family YPTS_0391 PF01553 Acyltransferase YPTS_0392 PF01219 Prokaryotic diacylglycerol kinase YPTS_0393 PF01726 LexA DNA binding domain YPTS_0393 PF00717 Peptidase S24-like YPTS_0394 PF01475 Ferric uptake regulator family YPTS_0395 PF01207 Dihydrouridine synthase (Dus) YPTS_0396 PF09583 Phage shock protein G (Phageshock_PspG) YPTS_0397 PF00107 Zinc-binding dehydrogenase YPTS_0397 PF08240 Alcohol dehydrogenase GroES-like domain YPTS_0398 PF03796 DnaB-like helicase C terminal domain YPTS_0398 PF00772 DnaB-like helicase N terminal domain YPTS_0399 PF01168 Alanine racemase, N-terminal domain YPTS_0399 PF00842 Alanine racemase, C-terminal domain YPTS_0400 PF00155 Aminotransferase class I and II YPTS_0401 PF04237 YjbR YPTS_0402 PF00005 ABC transporter YPTS_0402 PF17760 UvrA interaction domain YPTS_0402 PF17755 UvrA DNA-binding domain YPTS_0403 PF00436 Single-strand binding protein family YPTS_0404 PF05336 L-rhamnose mutarotase YPTS_0405 PF00465 Iron-containing alcohol dehydrogenase YPTS_0406 PF00596 Class II Aldolase and Adducin N-terminal domain YPTS_0407 PF06134 L-rhamnose isomerase (RhaA) YPTS_0408 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_0408 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTS_0411 PF02311 AraC-like ligand binding domain YPTS_0411 PF12833 Helix-turn-helix domain YPTS_0412 PF02311 AraC-like ligand binding domain YPTS_0412 PF12833 Helix-turn-helix domain YPTS_0413 PF06379 L-rhamnose-proton symport protein (RhaT) YPTS_0415 PF03400 IS1 transposase YPTS_0422 PF13247 4Fe-4S dicluster domain YPTS_0422 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_0422 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPTS_0423 PF12800 4Fe-4S binding domain YPTS_0423 PF13247 4Fe-4S dicluster domain YPTS_0424 PF00384 Molybdopterin oxidoreductase YPTS_0424 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTS_0424 PF01568 Molydopterin dinucleotide binding domain YPTS_0425 PF02683 Cytochrome C biogenesis protein transmembrane region YPTS_0425 PF11412 Disulphide bond corrector protein DsbC YPTS_0426 PF03091 CutA1 divalent ion tolerance protein YPTS_0427 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPTS_0428 PF00206 Lyase YPTS_0428 PF10415 Fumarase C C-terminus YPTS_0429 PF04186 FxsA cytoplasmic membrane protein YPTS_0430 PF00166 Chaperonin 10 Kd subunit YPTS_0431 PF00118 TCP-1/cpn60 chaperonin family YPTS_0432 PF13698 Domain of unknown function (DUF4156) YPTS_0433 PF04055 Radical SAM superfamily YPTS_0434 PF09285 Elongation factor P, C-terminal YPTS_0434 PF08207 Elongation factor P (EF-P) KOW-like domain YPTS_0434 PF01132 Elongation factor P (EF-P) OB domain YPTS_0435 PF00893 Small Multidrug Resistance protein YPTS_0436 PF02313 Fumarate reductase subunit D YPTS_0437 PF02300 Fumarate reductase subunit C YPTS_0438 PF13183 4Fe-4S dicluster domain YPTS_0438 PF13085 2Fe-2S iron-sulfur cluster binding domain YPTS_0439 PF02910 Fumarate reductase flavoprotein C-term YPTS_0439 PF00890 FAD binding domain YPTS_0440 PF00152 tRNA synthetases class II (D, K and N) YPTS_0441 PF12795 Mechanosensitive ion channel porin domain YPTS_0441 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPTS_0441 PF00924 Mechanosensitive ion channel YPTS_0442 PF02666 Phosphatidylserine decarboxylase YPTS_0443 PF03193 RsgA GTPase YPTS_0444 PF00929 Exonuclease YPTS_0447 PF08331 Domain of unknown function (DUF1730) YPTS_0448 PF01256 Carbohydrate kinase YPTS_0448 PF03853 YjeF-related protein N-terminus YPTS_0449 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPTS_0450 PF01520 N-acetylmuramoyl-L-alanine amidase YPTS_0451 PF01119 DNA mismatch repair protein, C-terminal domain YPTS_0451 PF08676 MutL C terminal dimerisation domain YPTS_0453 PF17209 Hfq protein YPTS_0455 PF16360 GTP-binding GTPase Middle Region YPTS_0455 PF01926 50S ribosome-binding GTPase YPTS_0455 PF13167 GTP-binding GTPase N-terminal YPTS_0456 PF12221 Bacterial membrane protein N terminal YPTS_0456 PF01145 SPFH domain / Band 7 family YPTS_0457 PF01145 SPFH domain / Band 7 family YPTS_0458 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPTS_0459 PF00709 Adenylosuccinate synthetase YPTS_0460 PF02082 Transcriptional regulator YPTS_0461 PF08206 Ribonuclease B OB domain YPTS_0461 PF17876 Cold shock domain YPTS_0461 PF08461 Ribonuclease R winged-helix domain YPTS_0461 PF00773 RNB domain YPTS_0461 PF00575 S1 RNA binding domain YPTS_0462 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPTS_0462 PF00588 SpoU rRNA Methylase family YPTS_0464 PF02770 Acyl-CoA dehydrogenase, middle domain YPTS_0464 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTS_0464 PF18158 Adaptive response protein AidB N-terminal domain YPTS_0465 PF07338 Protein of unknown function (DUF1471) YPTS_0466 PF00326 Prolyl oligopeptidase family YPTS_0468 PF01250 Ribosomal protein S6 YPTS_0469 PF00436 Single-strand binding protein family YPTS_0470 PF01084 Ribosomal protein S18 YPTS_0471 PF03948 Ribosomal protein L9, C-terminal domain YPTS_0471 PF01281 Ribosomal protein L9, N-terminal domain YPTS_0473 PF08525 Opacity-associated protein A N-terminal motif YPTS_0473 PF04225 Opacity-associated protein A LysM-like domain YPTS_0474 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTS_0474 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPTS_0475 PF04405 Domain of Unknown function (DUF542) YPTS_0475 PF01814 Hemerythrin HHE cation binding domain YPTS_0476 PF00149 Calcineurin-like phosphoesterase YPTS_0476 PF02872 5'-nucleotidase, C-terminal domain YPTS_0477 PF00459 Inositol monophosphatase family YPTS_0478 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPTS_0479 PF06526 Protein of unknown function (DUF1107) YPTS_0480 PF01595 Cyclin M transmembrane N-terminal domain YPTS_0480 PF03471 Transporter associated domain YPTS_0480 PF00571 CBS domain YPTS_0481 PF01625 Peptide methionine sulfoxide reductase YPTS_0482 PF17243 POTRA domain TamA domain 1 YPTS_0482 PF01103 Surface antigen YPTS_0482 PF07244 Surface antigen variable number repeat YPTS_0483 PF04357 TamB, inner membrane protein subunit of TAM complex YPTS_0484 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPTS_0485 PF00719 Inorganic pyrophosphatase YPTS_0486 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPTS_0487 PF01225 Mur ligase family, catalytic domain YPTS_0487 PF02875 Mur ligase family, glutamate ligase domain YPTS_0487 PF08245 Mur ligase middle domain YPTS_0489 PF02863 Arginine repressor, C-terminal domain YPTS_0489 PF01316 Arginine repressor, DNA binding domain YPTS_0490 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPTS_0490 PF00056 lactate/malate dehydrogenase, NAD binding domain YPTS_0491 PF13693 Winged helix-turn-helix DNA-binding YPTS_0493 PF00348 Polyprenyl synthetase YPTS_0494 PF00829 Ribosomal prokaryotic L21 protein YPTS_0495 PF01016 Ribosomal L27 protein YPTS_0496 PF00892 EamA-like transporter family YPTS_0497 PF01926 50S ribosome-binding GTPase YPTS_0497 PF01018 GTP1/OBG YPTS_0498 PF00672 HAMP domain YPTS_0498 PF00512 His Kinase A (phospho-acceptor) domain YPTS_0498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_0499 PF00072 Response regulator receiver domain YPTS_0499 PF00486 Transcriptional regulatory protein, C terminal YPTS_0500 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPTS_0501 PF03449 Transcription elongation factor, N-terminal YPTS_0501 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTS_0502 PF01985 CRS1 / YhbY (CRM) domain YPTS_0503 PF01728 FtsJ-like methyltransferase YPTS_0504 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_0504 PF17862 AAA+ lid domain YPTS_0504 PF06480 FtsH Extracellular YPTS_0504 PF01434 Peptidase family M41 YPTS_0505 PF00809 Pterin binding enzyme YPTS_0506 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTS_0506 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTS_0506 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTS_0506 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTS_0507 PF03840 Preprotein translocase SecG subunit YPTS_0508 PF17384 RimP C-terminal SH3 domain YPTS_0508 PF02576 RimP N-terminal domain YPTS_0509 PF08529 NusA N-terminal domain YPTS_0509 PF00575 S1 RNA binding domain YPTS_0509 PF13184 NusA-like KH domain YPTS_0510 PF00009 Elongation factor Tu GTP binding domain YPTS_0510 PF03144 Elongation factor Tu domain 2 YPTS_0510 PF11987 Translation-initiation factor 2 YPTS_0510 PF08364 Bacterial translation initiation factor IF-2 associated region YPTS_0510 PF04760 Translation initiation factor IF-2, N-terminal region YPTS_0511 PF02033 Ribosome-binding factor A YPTS_0512 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPTS_0512 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPTS_0512 PF09157 Pseudouridine synthase II TruB, C-terminal YPTS_0513 PF00312 Ribosomal protein S15 YPTS_0514 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPTS_0514 PF01138 3' exoribonuclease family, domain 1 YPTS_0514 PF03725 3' exoribonuclease family, domain 2 YPTS_0514 PF00575 S1 RNA binding domain YPTS_0514 PF00013 KH domain YPTS_0515 PF13181 Tetratricopeptide repeat YPTS_0515 PF07719 Tetratricopeptide repeat YPTS_0516 PF00270 DEAD/DEAH box helicase YPTS_0516 PF12343 Cold shock protein DEAD box A YPTS_0516 PF00271 Helicase conserved C-terminal domain YPTS_0516 PF03880 DbpA RNA binding domain YPTS_0518 PF01381 Helix-turn-helix YPTS_0520 PF00296 Luciferase-like monooxygenase YPTS_0521 PF00529 HlyD membrane-fusion protein of T1SS YPTS_0521 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_0522 PF00873 AcrB/AcrD/AcrF family YPTS_0523 PF02321 Outer membrane efflux protein YPTS_0523 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTS_0527 PF13508 Acetyltransferase (GNAT) domain YPTS_0528 PF01541 GIY-YIG catalytic domain YPTS_0531 PF13416 Bacterial extracellular solute-binding protein YPTS_0533 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_0534 PF00005 ABC transporter YPTS_0534 PF17912 MalK OB fold domain YPTS_0534 PF03459 TOBE domain YPTS_0537 PF13460 NAD(P)H-binding YPTS_0538 PF12706 Beta-lactamase superfamily domain YPTS_0540 PF07969 Amidohydrolase family YPTS_0541 PF00005 ABC transporter YPTS_0542 PF00005 ABC transporter YPTS_0543 PF06007 Phosphonate metabolism protein PhnJ YPTS_0544 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPTS_0545 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPTS_0546 PF06754 Phosphonate metabolism protein PhnG YPTS_0547 PF07702 UTRA domain YPTS_0547 PF00392 Bacterial regulatory proteins, gntR family YPTS_0550 PF03477 ATP cone domain YPTS_0550 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPTS_0551 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTS_0551 PF00005 ABC transporter YPTS_0552 PF00005 ABC transporter YPTS_0552 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTS_0553 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_0553 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTS_0554 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_0556 PF04074 YhcH/YjgK/YiaL YPTS_0557 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPTS_0557 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPTS_0558 PF06877 Regulator of ribonuclease activity B YPTS_0559 PF00583 Acetyltransferase (GNAT) family YPTS_0560 PF08264 Anticodon-binding domain of tRNA YPTS_0560 PF00133 tRNA synthetases class I (I, L, M and V) YPTS_0560 PF10458 Valyl tRNA synthetase tRNA binding arm YPTS_0561 PF04364 DNA polymerase III chi subunit, HolC YPTS_0562 PF00883 Cytosol aminopeptidase family, catalytic domain YPTS_0562 PF02789 Cytosol aminopeptidase family, N-terminal domain YPTS_0563 PF03739 Lipopolysaccharide export system permease LptF/LptG YPTS_0564 PF03739 Lipopolysaccharide export system permease LptF/LptG YPTS_0568 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPTS_0568 PF18766 SWI2/SNF2 ATPase YPTS_0568 PF12008 Type I restriction and modification enzyme - subunit R C terminal YPTS_0569 PF05524 PEP-utilising enzyme, N-terminal YPTS_0569 PF02896 PEP-utilising enzyme, TIM barrel domain YPTS_0569 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTS_0569 PF00391 PEP-utilising enzyme, mobile domain YPTS_0569 PF00381 PTS HPr component phosphorylation site YPTS_0570 PF10696 Protein of unknown function (DUF2501) YPTS_0571 PF03992 Antibiotic biosynthesis monooxygenase YPTS_0572 PF01791 DeoC/LacD family aldolase YPTS_0573 PF13407 Periplasmic binding protein domain YPTS_0574 PF02653 Branched-chain amino acid transport system / permease component YPTS_0575 PF02653 Branched-chain amino acid transport system / permease component YPTS_0576 PF00005 ABC transporter YPTS_0577 PF04198 Putative sugar-binding domain YPTS_0577 PF00325 Bacterial regulatory proteins, crp family YPTS_0578 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTS_0578 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_0579 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTS_0581 PF00266 Aminotransferase class-V YPTS_0582 PF02770 Acyl-CoA dehydrogenase, middle domain YPTS_0582 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTS_0582 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPTS_0585 PF00581 Rhodanese-like domain YPTS_0585 PF00899 ThiF family YPTS_0587 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_0588 PF00873 AcrB/AcrD/AcrF family YPTS_0591 PF01095 Pectinesterase YPTS_0592 PF00990 Diguanylate cyclase, GGDEF domain YPTS_0593 PF07256 Protein of unknown function (DUF1435) YPTS_0594 PF08468 Methyltransferase small domain N-terminal YPTS_0594 PF05175 Methyltransferase small domain YPTS_0595 PF03603 DNA polymerase III psi subunit YPTS_0596 PF00583 Acetyltransferase (GNAT) family YPTS_0597 PF03144 Elongation factor Tu domain 2 YPTS_0597 PF00009 Elongation factor Tu GTP binding domain YPTS_0597 PF16658 Class II release factor RF3, C-terminal domain YPTS_0598 PF04972 BON domain YPTS_0599 PF07043 Protein of unknown function (DUF1328) YPTS_0600 PF01734 Patatin-like phospholipase YPTS_0601 PF01026 TatD related DNase YPTS_0602 PF01773 Na+ dependent nucleoside transporter N-terminus YPTS_0602 PF07662 Na+ dependent nucleoside transporter C-terminus YPTS_0602 PF07670 Nucleoside recognition YPTS_0603 PF01791 DeoC/LacD family aldolase YPTS_0604 PF02885 Glycosyl transferase family, helical bundle domain YPTS_0604 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPTS_0604 PF00591 Glycosyl transferase family, a/b domain YPTS_0605 PF01676 Metalloenzyme superfamily YPTS_0606 PF01048 Phosphorylase superfamily YPTS_0607 PF10144 Bacterial virulence factor haemolysin YPTS_0608 PF18429 Domain of unknown function (DUF5609) YPTS_0609 PF18073 Rubredoxin metal binding domain YPTS_0610 PF01381 Helix-turn-helix YPTS_0610 PF13521 AAA domain YPTS_0612 PF12848 ABC transporter YPTS_0612 PF00005 ABC transporter YPTS_0613 PF00691 OmpA family YPTS_0614 PF00990 Diguanylate cyclase, GGDEF domain YPTS_0614 PF17152 Periplasmic sensor domain YPTS_0616 PF00690 Cation transporter/ATPase, N-terminus YPTS_0616 PF00689 Cation transporting ATPase, C-terminus YPTS_0617 PF01464 Transglycosylase SLT domain YPTS_0617 PF14718 Soluble lytic murein transglycosylase L domain YPTS_0618 PF01371 Trp repressor protein YPTS_0619 PF01931 Protein of unknown function DUF84 YPTS_0620 PF00300 Histidine phosphatase superfamily (branch 1) YPTS_0621 PF06445 GyrI-like small molecule binding domain YPTS_0621 PF12833 Helix-turn-helix domain YPTS_0623 PF05981 CreA protein YPTS_0624 PF00486 Transcriptional regulatory protein, C terminal YPTS_0624 PF00072 Response regulator receiver domain YPTS_0626 PF00696 Amino acid kinase family YPTS_0626 PF00742 Homoserine dehydrogenase YPTS_0626 PF01842 ACT domain YPTS_0626 PF03447 Homoserine dehydrogenase, NAD binding domain YPTS_0626 PF13840 ACT domain YPTS_0627 PF00288 GHMP kinases N terminal domain YPTS_0627 PF08544 GHMP kinases C terminal YPTS_0628 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_0628 PF14821 Threonine synthase N terminus YPTS_0629 PF03883 Peroxide stress protein YaaA YPTS_0630 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPTS_0631 PF00994 Probable molybdopterin binding domain YPTS_0632 PF07690 Major Facilitator Superfamily YPTS_0634 PF01184 GPR1/FUN34/yaaH family YPTS_0635 PF00012 Hsp70 protein YPTS_0636 PF01556 DnaJ C terminal domain YPTS_0636 PF00226 DnaJ domain YPTS_0636 PF00684 DnaJ central domain YPTS_0637 PF06965 Na+/H+ antiporter 1 YPTS_0638 PF03466 LysR substrate binding domain YPTS_0638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_0639 PF01649 Ribosomal protein S20 YPTS_0640 PF01687 Riboflavin kinase YPTS_0640 PF06574 FAD synthetase YPTS_0641 PF08264 Anticodon-binding domain of tRNA YPTS_0641 PF00133 tRNA synthetases class I (I, L, M and V) YPTS_0641 PF06827 Zinc finger found in FPG and IleRS YPTS_0642 PF01252 Signal peptidase (SPase) II YPTS_0643 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTS_0644 PF02401 LytB protein YPTS_0646 PF01113 Dihydrodipicolinate reductase, N-terminus YPTS_0646 PF05173 Dihydrodipicolinate reductase, C-terminus YPTS_0647 PF00117 Glutamine amidotransferase class-I YPTS_0647 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPTS_0648 PF02142 MGS-like domain YPTS_0648 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPTS_0648 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPTS_0649 PF01810 LysE type translocator YPTS_0650 PF06738 Putative threonine/serine exporter YPTS_0651 PF12821 Threonine/Serine exporter, ThrE YPTS_0652 PF00186 Dihydrofolate reductase YPTS_0654 PF00149 Calcineurin-like phosphoesterase YPTS_0655 PF04379 ApaG domain YPTS_0656 PF00398 Ribosomal RNA adenine dimethylase YPTS_0657 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPTS_0658 PF00639 PPIC-type PPIASE domain YPTS_0658 PF09312 SurA N-terminal domain YPTS_0659 PF03968 OstA-like protein YPTS_0659 PF04453 LPS transport system D YPTS_0660 PF05099 Tellurite resistance protein TerB YPTS_0660 PF00226 DnaJ domain YPTS_0661 PF00849 RNA pseudouridylate synthase YPTS_0670 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_0670 PF07724 AAA domain (Cdc48 subfamily) YPTS_0670 PF17871 AAA lid domain YPTS_0670 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_0671 PF04717 Type VI secretion system, phage-baseplate injector YPTS_0678 PF00691 OmpA family YPTS_0678 PF05736 OprF membrane domain YPTS_0682 PF18337 RapA N-terminal Tudor like domain YPTS_0682 PF00271 Helicase conserved C-terminal domain YPTS_0682 PF12137 RNA polymerase recycling family C-terminal YPTS_0682 PF00176 SNF2 family N-terminal domain YPTS_0682 PF18339 RapA N-terminal Tudor like domain 1 YPTS_0683 PF00136 DNA polymerase family B YPTS_0683 PF03104 DNA polymerase family B, exonuclease domain YPTS_0684 PF09335 SNARE associated Golgi protein YPTS_0685 PF00005 ABC transporter YPTS_0686 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_0690 PF04754 Putative transposase, YhgA-like YPTS_0691 PF13683 Integrase core domain YPTS_0691 PF13276 HTH-like domain YPTS_0692 PF12793 Sugar transport-related sRNA regulator N-term YPTS_0692 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTS_0693 PF07690 Major Facilitator Superfamily YPTS_0695 PF00694 Aconitase C-terminal domain YPTS_0696 PF00330 Aconitase family (aconitate hydratase) YPTS_0697 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTS_0698 PF08502 LeuA allosteric (dimerisation) domain YPTS_0698 PF00682 HMGL-like YPTS_0700 PF03466 LysR substrate binding domain YPTS_0700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_0701 PF00501 AMP-binding enzyme YPTS_0702 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTS_0702 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTS_0702 PF00205 Thiamine pyrophosphate enzyme, central domain YPTS_0703 PF10369 Small subunit of acetolactate synthase YPTS_0704 PF00356 Bacterial regulatory proteins, lacI family YPTS_0704 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTS_0705 PF06610 L-alanine exporter YPTS_0706 PF02381 MraZ protein, putative antitoxin-like YPTS_0707 PF01795 MraW methylase family YPTS_0708 PF04999 Cell division protein FtsL YPTS_0709 PF00905 Penicillin binding protein transpeptidase domain YPTS_0709 PF03717 Penicillin-binding Protein dimerisation domain YPTS_0710 PF02875 Mur ligase family, glutamate ligase domain YPTS_0710 PF08245 Mur ligase middle domain YPTS_0710 PF01225 Mur ligase family, catalytic domain YPTS_0711 PF01225 Mur ligase family, catalytic domain YPTS_0711 PF02875 Mur ligase family, glutamate ligase domain YPTS_0711 PF08245 Mur ligase middle domain YPTS_0712 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPTS_0712 PF00953 Glycosyl transferase family 4 YPTS_0713 PF08245 Mur ligase middle domain YPTS_0713 PF02875 Mur ligase family, glutamate ligase domain YPTS_0714 PF01098 Cell cycle protein YPTS_0715 PF04101 Glycosyltransferase family 28 C-terminal domain YPTS_0715 PF03033 Glycosyltransferase family 28 N-terminal domain YPTS_0716 PF01225 Mur ligase family, catalytic domain YPTS_0716 PF02875 Mur ligase family, glutamate ligase domain YPTS_0716 PF08245 Mur ligase middle domain YPTS_0717 PF07478 D-ala D-ala ligase C-terminus YPTS_0717 PF01820 D-ala D-ala ligase N-terminus YPTS_0718 PF03799 Cell division protein FtsQ YPTS_0718 PF08478 POTRA domain, FtsQ-type YPTS_0719 PF02491 SHS2 domain inserted in FTSA YPTS_0720 PF12327 FtsZ family, C-terminal domain YPTS_0720 PF00091 Tubulin/FtsZ family, GTPase domain YPTS_0721 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPTS_0723 PF06558 Secretion monitor precursor protein (SecM) YPTS_0724 PF02810 SEC-C motif YPTS_0724 PF07517 SecA DEAD-like domain YPTS_0724 PF01043 SecA preprotein cross-linking domain YPTS_0724 PF07516 SecA Wing and Scaffold domain YPTS_0725 PF00293 NUDIX domain YPTS_0727 PF01797 Transposase IS200 like YPTS_0728 PF03884 DNA gyrase inhibitor YacG YPTS_0729 PF07072 Cell division protein YPTS_0730 PF01121 Dephospho-CoA kinase YPTS_0732 PF00478 IMP dehydrogenase / GMP reductase domain YPTS_0733 PF00872 Transposase, Mutator family YPTS_0734 PF00482 Type II secretion system (T2SS), protein F YPTS_0735 PF00437 Type II/IV secretion system protein YPTS_0735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPTS_0736 PF07963 Prokaryotic N-terminal methylation motif YPTS_0737 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPTS_0737 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPTS_0738 PF01510 N-acetylmuramoyl-L-alanine amidase YPTS_0739 PF17113 Regulatory signalling modulator protein AmpE YPTS_0740 PF00324 Amino acid permease YPTS_0742 PF00392 Bacterial regulatory proteins, gntR family YPTS_0742 PF07729 FCD domain YPTS_0743 PF17831 Pyruvate dehydrogenase E1 component middle domain YPTS_0743 PF00456 Transketolase, thiamine diphosphate binding domain YPTS_0744 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPTS_0744 PF00364 Biotin-requiring enzyme YPTS_0744 PF02817 e3 binding domain YPTS_0745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTS_0745 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_0746 PF00330 Aconitase family (aconitate hydratase) YPTS_0746 PF06434 Aconitate hydratase 2 N-terminus YPTS_0746 PF11791 Aconitate B N-terminal domain YPTS_0747 PF06062 Uncharacterised protein family (UPF0231) YPTS_0748 PF00892 EamA-like transporter family YPTS_0750 PF02675 S-adenosylmethionine decarboxylase YPTS_0751 PF17284 Spermidine synthase tetramerisation domain YPTS_0752 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPTS_0753 PF07732 Multicopper oxidase YPTS_0753 PF07731 Multicopper oxidase YPTS_0753 PF00394 Multicopper oxidase YPTS_0753 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPTS_0754 PF00156 Phosphoribosyl transferase domain YPTS_0755 PF00484 Carbonic anhydrase YPTS_0756 PF00005 ABC transporter YPTS_0757 PF01061 ABC-2 type transporter YPTS_0758 PF01522 Polysaccharide deacetylase YPTS_0759 PF02261 Aspartate decarboxylase YPTS_0760 PF02569 Pantoate-beta-alanine ligase YPTS_0761 PF02548 Ketopantoate hydroxymethyltransferase YPTS_0762 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPTS_0763 PF01743 Poly A polymerase head domain YPTS_0763 PF12626 Polymerase A arginine-rich C-terminus YPTS_0763 PF12627 Probable RNA and SrmB- binding site of polymerase A YPTS_0764 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTS_0765 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPTS_0766 PF17746 SfsA N-terminal OB domain YPTS_0766 PF03749 Sugar fermentation stimulation protein RE domain YPTS_0767 PF02834 LigT like Phosphoesterase YPTS_0769 PF08482 ATP-dependent helicase C-terminal YPTS_0769 PF04408 Helicase associated domain (HA2) YPTS_0769 PF00271 Helicase conserved C-terminal domain YPTS_0769 PF00270 DEAD/DEAH box helicase YPTS_0770 PF14814 Bifunctional transglycosylase second domain YPTS_0770 PF00912 Transglycosylase YPTS_0770 PF00905 Penicillin binding protein transpeptidase domain YPTS_0770 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPTS_0771 PF00005 ABC transporter YPTS_0772 PF01497 Periplasmic binding protein YPTS_0773 PF01032 FecCD transport family YPTS_0774 PF00202 Aminotransferase class-III YPTS_0776 PF00654 Voltage gated chloride channel YPTS_0777 PF01521 Iron-sulphur cluster biosynthesis YPTS_0778 PF03458 UPF0126 domain YPTS_0779 PF01497 Periplasmic binding protein YPTS_0780 PF01048 Phosphorylase superfamily YPTS_0781 PF01966 HD domain YPTS_0781 PF13286 Phosphohydrolase-associated domain YPTS_0782 PF00595 PDZ domain YPTS_0783 PF00672 HAMP domain YPTS_0783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_0783 PF00512 His Kinase A (phospho-acceptor) domain YPTS_0783 PF01627 Hpt domain YPTS_0783 PF00072 Response regulator receiver domain YPTS_0783 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPTS_0784 PF01938 TRAM domain YPTS_0784 PF05958 tRNA (Uracil-5-)-methyltransferase YPTS_0785 PF02824 TGS domain YPTS_0785 PF13291 ACT domain YPTS_0785 PF04607 Region found in RelA / SpoT proteins YPTS_0786 PF03819 MazG nucleotide pyrophosphohydrolase domain YPTS_0787 PF06418 CTP synthase N-terminus YPTS_0787 PF00117 Glutamine amidotransferase class-I YPTS_0788 PF00113 Enolase, C-terminal TIM barrel domain YPTS_0788 PF03952 Enolase, N-terminal domain YPTS_0789 PF00080 Copper/zinc superoxide dismutase (SODC) YPTS_0790 PF04055 Radical SAM superfamily YPTS_0791 PF01242 6-pyruvoyl tetrahydropterin synthase YPTS_0792 PF00667 FAD binding domain YPTS_0792 PF00175 Oxidoreductase NAD-binding domain YPTS_0792 PF00258 Flavodoxin YPTS_0793 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPTS_0793 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPTS_0794 PF01507 Phosphoadenosine phosphosulfate reductase family YPTS_0798 PF10414 Sirohaem synthase dimerisation region YPTS_0798 PF14824 Sirohaem biosynthesis protein central YPTS_0798 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTS_0799 PF01507 Phosphoadenosine phosphosulfate reductase family YPTS_0800 PF00009 Elongation factor Tu GTP binding domain YPTS_0802 PF12084 Protein of unknown function (DUF3561) YPTS_0803 PF04977 Septum formation initiator YPTS_0804 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPTS_0805 PF02542 YgbB family YPTS_0806 PF01142 tRNA pseudouridine synthase D (TruD) YPTS_0807 PF01975 Survival protein SurE YPTS_0809 PF01551 Peptidase family M23 YPTS_0809 PF01476 LysM domain YPTS_0810 PF04545 Sigma-70, region 4 YPTS_0810 PF00140 Sigma-70 factor, region 1.2 YPTS_0810 PF04539 Sigma-70 region 3 YPTS_0810 PF04542 Sigma-70 region 2 YPTS_0811 PF05192 MutS domain III YPTS_0811 PF01624 MutS domain I YPTS_0811 PF05188 MutS domain II YPTS_0811 PF00488 MutS domain V YPTS_0811 PF05190 MutS family domain IV YPTS_0813 PF02502 Ribose/Galactose Isomerase YPTS_0814 PF08240 Alcohol dehydrogenase GroES-like domain YPTS_0814 PF00107 Zinc-binding dehydrogenase YPTS_0816 PF02733 Dak1 domain YPTS_0817 PF02734 DAK2 domain YPTS_0818 PF13936 Helix-turn-helix domain YPTS_0818 PF04198 Putative sugar-binding domain YPTS_0819 PF02040 Arsenical pump membrane protein YPTS_0820 PF01022 Bacterial regulatory protein, arsR family YPTS_0823 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_0824 PF00034 Cytochrome c YPTS_0824 PF03150 Di-haem cytochrome c peroxidase YPTS_0824 PF14376 Haem-binding domain YPTS_0827 PF00593 TonB dependent receptor YPTS_0827 PF07715 TonB-dependent Receptor Plug Domain YPTS_0829 PF00557 Metallopeptidase family M24 YPTS_0831 PF05681 Fumarate hydratase (Fumerase) YPTS_0831 PF05683 Fumarase C-terminus YPTS_0832 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTS_0832 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_0833 PF01261 Xylose isomerase-like TIM barrel YPTS_0834 PF02653 Branched-chain amino acid transport system / permease component YPTS_0835 PF02653 Branched-chain amino acid transport system / permease component YPTS_0836 PF00005 ABC transporter YPTS_0838 PF00455 DeoR C terminal sensor domain YPTS_0838 PF08220 DeoR-like helix-turn-helix domain YPTS_0839 PF00596 Class II Aldolase and Adducin N-terminal domain YPTS_0840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTS_0840 PF01568 Molydopterin dinucleotide binding domain YPTS_0840 PF00384 Molybdopterin oxidoreductase YPTS_0841 PF13247 4Fe-4S dicluster domain YPTS_0841 PF12800 4Fe-4S binding domain YPTS_0842 PF04976 DMSO reductase anchor subunit (DmsC) YPTS_0843 PF02613 Nitrate reductase delta subunit YPTS_0844 PF01292 Prokaryotic cytochrome b561 YPTS_0845 PF07361 Cytochrome b562 YPTS_0846 PF00141 Peroxidase YPTS_0849 PF00005 ABC transporter YPTS_0850 PF02653 Branched-chain amino acid transport system / permease component YPTS_0851 PF00456 Transketolase, thiamine diphosphate binding domain YPTS_0852 PF02779 Transketolase, pyrimidine binding domain YPTS_0852 PF02780 Transketolase, C-terminal domain YPTS_0853 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTS_0853 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_0857 PF07690 Major Facilitator Superfamily YPTS_0858 PF02464 Competence-damaged protein YPTS_0859 PF00154 recA bacterial DNA recombination protein YPTS_0860 PF02631 RecX family YPTS_0861 PF02272 DHHA1 domain YPTS_0861 PF01411 tRNA synthetases class II (A) YPTS_0861 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPTS_0862 PF02599 Global regulator protein family YPTS_0863 PF13419 Haloacid dehalogenase-like hydrolase YPTS_0864 PF09335 SNARE associated Golgi protein YPTS_0865 PF04262 Glutamate-cysteine ligase YPTS_0866 PF02664 S-Ribosylhomocysteinase (LuxS) YPTS_0867 PF03471 Transporter associated domain YPTS_0867 PF00571 CBS domain YPTS_0867 PF01595 Cyclin M transmembrane N-terminal domain YPTS_0868 PF01578 Cytochrome C assembly protein YPTS_0869 PF00448 SRP54-type protein, GTPase domain YPTS_0869 PF02978 Signal peptide binding domain YPTS_0869 PF02881 SRP54-type protein, helical bundle domain YPTS_0870 PF00886 Ribosomal protein S16 YPTS_0871 PF01782 RimM N-terminal domain YPTS_0871 PF05239 PRC-barrel domain YPTS_0872 PF01746 tRNA (Guanine-1)-methyltransferase YPTS_0873 PF01245 Ribosomal protein L19 YPTS_0874 PF04338 Protein of unknown function, DUF481 YPTS_0875 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPTS_0876 PF04397 LytTr DNA-binding domain YPTS_0876 PF00072 Response regulator receiver domain YPTS_0877 PF00793 DAHP synthetase I family YPTS_0878 PF01817 Chorismate mutase type II YPTS_0878 PF02153 Prephenate dehydrogenase YPTS_0879 PF01695 IstB-like ATP binding protein YPTS_0880 PF02796 Helix-turn-helix domain of resolvase YPTS_0880 PF00665 Integrase core domain YPTS_0881 PF00800 Prephenate dehydratase YPTS_0881 PF01817 Chorismate mutase type II YPTS_0883 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPTS_0884 PF13525 Outer membrane lipoprotein YPTS_0885 PF01479 S4 domain YPTS_0885 PF00849 RNA pseudouridylate synthase YPTS_0887 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_0887 PF02861 Clp amino terminal domain, pathogenicity island component YPTS_0887 PF17871 AAA lid domain YPTS_0887 PF07724 AAA domain (Cdc48 subfamily) YPTS_0887 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_0891 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPTS_0892 PF13091 PLD-like domain YPTS_0893 PF00583 Acetyltransferase (GNAT) family YPTS_0893 PF13380 CoA binding domain YPTS_0893 PF13607 Succinyl-CoA ligase like flavodoxin domain YPTS_0895 PF00085 Thioredoxin YPTS_0896 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPTS_0896 PF00588 SpoU rRNA Methylase family YPTS_0897 PF07690 Major Facilitator Superfamily YPTS_0898 PF00529 HlyD membrane-fusion protein of T1SS YPTS_0898 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_0899 PF01047 MarR family YPTS_0900 PF05437 Branched-chain amino acid transport protein (AzlD) YPTS_0901 PF03591 AzlC protein YPTS_0902 PF07690 Major Facilitator Superfamily YPTS_0904 PF01425 Amidase YPTS_0907 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_0908 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_0910 PF00005 ABC transporter YPTS_0911 PF00266 Aminotransferase class-V YPTS_0912 PF07687 Peptidase dimerisation domain YPTS_0912 PF01546 Peptidase family M20/M25/M40 YPTS_0913 PF00795 Carbon-nitrogen hydrolase YPTS_0914 PF00155 Aminotransferase class I and II YPTS_0915 PF00596 Class II Aldolase and Adducin N-terminal domain YPTS_0917 PF03079 ARD/ARD' family YPTS_0918 PF01008 Initiation factor 2 subunit family YPTS_0919 PF01636 Phosphotransferase enzyme family YPTS_0921 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTS_0921 PF08479 POTRA domain, ShlB-type YPTS_0922 PF05860 haemagglutination activity domain YPTS_0923 PF18254 HMW1 domain 2 YPTS_0923 PF18071 HMW1C N-terminal YPTS_0925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTS_0925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPTS_0925 PF09317 Domain of unknown function (DUF1974) YPTS_0926 PF13580 SIS domain YPTS_0927 PF13230 Glutamine amidotransferases class-II YPTS_0928 PF03734 L,D-transpeptidase catalytic domain YPTS_0929 PF11973 NQRA C-terminal domain YPTS_0929 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPTS_0930 PF03116 NQR2, RnfD, RnfE family YPTS_0931 PF04205 FMN-binding domain YPTS_0932 PF02508 Rnf-Nqr subunit, membrane protein YPTS_0933 PF02508 Rnf-Nqr subunit, membrane protein YPTS_0934 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTS_0934 PF00970 Oxidoreductase FAD-binding domain YPTS_0934 PF00175 Oxidoreductase NAD-binding domain YPTS_0935 PF02424 ApbE family YPTS_0937 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTS_0938 PF11798 IMS family HHH motif YPTS_0938 PF11799 impB/mucB/samB family C-terminal domain YPTS_0938 PF00817 impB/mucB/samB family YPTS_0939 PF01546 Peptidase family M20/M25/M40 YPTS_0939 PF07687 Peptidase dimerisation domain YPTS_0943 PF00156 Phosphoribosyl transferase domain YPTS_0945 PF07417 Sigma factor-binding transcriptional regulator Crl YPTS_0946 PF00696 Amino acid kinase family YPTS_0946 PF01472 PUA domain YPTS_0947 PF00171 Aldehyde dehydrogenase family YPTS_0948 PF07317 Flagellar regulator YcgR YPTS_0948 PF07238 PilZ domain YPTS_0950 PF08241 Methyltransferase domain YPTS_0952 PF01202 Shikimate kinase YPTS_0953 PF06865 Pyrimidine/purine nucleoside phosphorylase YPTS_0954 PF04381 Putative exonuclease, RdgC YPTS_0955 PF00480 ROK family YPTS_0956 PF13476 AAA domain YPTS_0957 PF12320 Type 5 capsule protein repressor C-terminal domain YPTS_0957 PF00149 Calcineurin-like phosphoesterase YPTS_0958 PF00072 Response regulator receiver domain YPTS_0958 PF00486 Transcriptional regulatory protein, C terminal YPTS_0959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_0959 PF00512 His Kinase A (phospho-acceptor) domain YPTS_0959 PF00989 PAS fold YPTS_0959 PF11808 Phosphate regulon sensor protein PhoR YPTS_0960 PF12849 PBP superfamily domain YPTS_0961 PF05525 Branched-chain amino acid transport protein YPTS_0962 PF00324 Amino acid permease YPTS_0963 PF00128 Alpha amylase, catalytic domain YPTS_0963 PF02903 Alpha amylase, N-terminal ig-like domain YPTS_0966 PF00578 AhpC/TSA family YPTS_0966 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPTS_0967 PF04336 Acyl carrier protein phosphodiesterase YPTS_0968 PF02547 Queuosine biosynthesis protein YPTS_0969 PF01702 Queuine tRNA-ribosyltransferase YPTS_0970 PF02699 Preprotein translocase subunit YPTS_0971 PF02355 Protein export membrane protein YPTS_0971 PF13721 SecD export protein N-terminal TM region YPTS_0971 PF07549 SecD/SecF GG Motif YPTS_0972 PF02355 Protein export membrane protein YPTS_0972 PF07549 SecD/SecF GG Motif YPTS_0974 PF03477 ATP cone domain YPTS_0975 PF01872 RibD C-terminal domain YPTS_0975 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPTS_0976 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPTS_0977 PF01029 NusB family YPTS_0978 PF02769 AIR synthase related protein, C-terminal domain YPTS_0978 PF00586 AIR synthase related protein, N-terminal domain YPTS_0979 PF04608 Phosphatidylglycerophosphatase A YPTS_0980 PF02780 Transketolase, C-terminal domain YPTS_0980 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPTS_0980 PF02779 Transketolase, pyrimidine binding domain YPTS_0981 PF00348 Polyprenyl synthetase YPTS_0982 PF02609 Exonuclease VII small subunit YPTS_0984 PF02926 THUMP domain YPTS_0984 PF02568 Thiamine biosynthesis protein (ThiI) YPTS_0985 PF01965 DJ-1/PfpI family YPTS_0986 PF02558 Ketopantoate reductase PanE/ApbA YPTS_0986 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPTS_0987 PF04461 Protein of unknown function (DUF520) YPTS_0988 PF07690 Major Facilitator Superfamily YPTS_0989 PF01040 UbiA prenyltransferase family YPTS_0990 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPTS_0991 PF00510 Cytochrome c oxidase subunit III YPTS_0992 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPTS_0993 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPTS_0993 PF06481 COX Aromatic Rich Motif YPTS_0994 PF03502 Nucleoside-specific channel-forming protein, Tsx YPTS_0995 PF07690 Major Facilitator Superfamily YPTS_0996 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTS_0996 PF03923 Uncharacterized lipoprotein YPTS_0997 PF01722 BolA-like protein YPTS_0999 PF05697 Bacterial trigger factor protein (TF) YPTS_0999 PF05698 Bacterial trigger factor protein (TF) C-terminus YPTS_0999 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTS_1000 PF00574 Clp protease YPTS_1001 PF07724 AAA domain (Cdc48 subfamily) YPTS_1001 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_1001 PF06689 ClpX C4-type zinc finger YPTS_1002 PF05362 Lon protease (S16) C-terminal proteolytic domain YPTS_1002 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_1002 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPTS_1003 PF00216 Bacterial DNA-binding protein YPTS_1004 PF13145 PPIC-type PPIASE domain YPTS_1007 PF06508 Queuosine biosynthesis protein QueC YPTS_1008 PF12793 Sugar transport-related sRNA regulator N-term YPTS_1008 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTS_1010 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_1011 PF13404 AsnC-type helix-turn-helix domain YPTS_1011 PF01037 Lrp/AsnC ligand binding domain YPTS_1012 PF00005 ABC transporter YPTS_1012 PF00664 ABC transporter transmembrane region YPTS_1013 PF00664 ABC transporter transmembrane region YPTS_1013 PF00005 ABC transporter YPTS_1014 PF00543 Nitrogen regulatory protein P-II YPTS_1015 PF00909 Ammonium Transporter Family YPTS_1018 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPTS_1019 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTS_1020 PF05321 Haemolysin expression modulating protein YPTS_1021 PF10757 Biofilm formation regulator YbaJ YPTS_1023 PF00444 Ribosomal protein L36 YPTS_1024 PF01197 Ribosomal protein L31 YPTS_1025 PF00873 AcrB/AcrD/AcrF family YPTS_1026 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_1026 PF00529 HlyD membrane-fusion protein of T1SS YPTS_1027 PF08361 MAATS-type transcriptional repressor, C-terminal region YPTS_1027 PF00440 Bacterial regulatory proteins, tetR family YPTS_1028 PF02635 DsrE/DsrF-like family YPTS_1029 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPTS_1029 PF12795 Mechanosensitive ion channel porin domain YPTS_1029 PF00924 Mechanosensitive ion channel YPTS_1030 PF10689 Protein of unknown function (DUF2496) YPTS_1034 PF00156 Phosphoribosyl transferase domain YPTS_1035 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPTS_1035 PF12169 DNA polymerase III subunits gamma and tau domain III YPTS_1035 PF12170 DNA polymerase III tau subunit V interacting with alpha YPTS_1036 PF02575 YbaB/EbfC DNA-binding family YPTS_1037 PF02132 RecR protein YPTS_1037 PF13662 Toprim domain YPTS_1038 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_1038 PF00183 Hsp90 protein YPTS_1039 PF05191 Adenylate kinase, active site lid YPTS_1040 PF00762 Ferrochelatase YPTS_1041 PF00175 Oxidoreductase NAD-binding domain YPTS_1041 PF00970 Oxidoreductase FAD-binding domain YPTS_1041 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTS_1042 PF00483 Nucleotidyl transferase YPTS_1043 PF16363 GDP-mannose 4,6 dehydratase YPTS_1044 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTS_1045 PF01370 NAD dependent epimerase/dehydratase family YPTS_1053 PF01370 NAD dependent epimerase/dehydratase family YPTS_1053 PF00551 Formyl transferase YPTS_1053 PF02911 Formyl transferase, C-terminal domain YPTS_1054 PF16363 GDP-mannose 4,6 dehydratase YPTS_1055 PF00288 GHMP kinases N terminal domain YPTS_1055 PF08544 GHMP kinases C terminal YPTS_1056 PF13580 SIS domain YPTS_1057 PF00483 Nucleotidyl transferase YPTS_1060 PF02706 Chain length determinant protein YPTS_1061 PF00294 pfkB family carbohydrate kinase YPTS_1062 PF00999 Sodium/hydrogen exchanger family YPTS_1062 PF02254 TrkA-N domain YPTS_1063 PF07690 Major Facilitator Superfamily YPTS_1068 PF04073 Aminoacyl-tRNA editing domain YPTS_1069 PF01963 TraB family YPTS_1070 PF00403 Heavy-metal-associated domain YPTS_1071 PF13411 MerR HTH family regulatory protein YPTS_1072 PF01957 NfeD-like C-terminal, partner-binding YPTS_1073 PF01145 SPFH domain / Band 7 family YPTS_1073 PF16200 C-terminal region of band_7 YPTS_1074 PF00085 Thioredoxin YPTS_1075 PF00106 short chain dehydrogenase YPTS_1076 PF13472 GDSL-like Lipase/Acylhydrolase family YPTS_1077 PF00005 ABC transporter YPTS_1079 PF02222 ATP-grasp domain YPTS_1079 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPTS_1080 PF00731 AIR carboxylase YPTS_1081 PF00149 Calcineurin-like phosphoesterase YPTS_1082 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPTS_1083 PF09190 DALR domain YPTS_1083 PF01406 tRNA synthetases class I (C) catalytic domain YPTS_1085 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPTS_1085 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPTS_1092 PF01066 CDP-alcohol phosphatidyltransferase YPTS_1094 PF01553 Acyltransferase YPTS_1095 PF12146 Serine aminopeptidase, S33 YPTS_1095 PF12147 Putative methyltransferase YPTS_1096 PF00782 Dual specificity phosphatase, catalytic domain YPTS_1099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_1099 PF03466 LysR substrate binding domain YPTS_1100 PF00248 Aldo/keto reductase family YPTS_1101 PF00248 Aldo/keto reductase family YPTS_1109 PF00849 RNA pseudouridylate synthase YPTS_1109 PF01479 S4 domain YPTS_1110 PF08007 Cupin superfamily protein YPTS_1113 PF13018 Extended Signal Peptide of Type V secretion system YPTS_1113 PF03797 Autotransporter beta-domain YPTS_1113 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTS_1113 PF03212 Pertactin YPTS_1116 PF05638 Type VI secretion system effector, Hcp YPTS_1121 PF13693 Winged helix-turn-helix DNA-binding YPTS_1122 PF00912 Transglycosylase YPTS_1122 PF00905 Penicillin binding protein transpeptidase domain YPTS_1122 PF06832 Penicillin-Binding Protein C-terminus Family YPTS_1123 PF00207 Alpha-2-macroglobulin family YPTS_1123 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPTS_1123 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPTS_1123 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPTS_1123 PF17962 Bacterial macroglobulin domain 6 YPTS_1123 PF01835 MG2 domain YPTS_1123 PF07703 Alpha-2-macroglobulin bait region domain YPTS_1126 PF00171 Aldehyde dehydrogenase family YPTS_1127 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTS_1127 PF00205 Thiamine pyrophosphate enzyme, central domain YPTS_1127 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTS_1129 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTS_1129 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTS_1130 PF13407 Periplasmic binding protein domain YPTS_1131 PF00005 ABC transporter YPTS_1132 PF02653 Branched-chain amino acid transport system / permease component YPTS_1133 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTS_1133 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTS_1134 PF00294 pfkB family carbohydrate kinase YPTS_1135 PF01261 Xylose isomerase-like TIM barrel YPTS_1136 PF04962 KduI/IolB family YPTS_1138 PF00005 ABC transporter YPTS_1138 PF00664 ABC transporter transmembrane region YPTS_1142 PF00196 Bacterial regulatory proteins, luxR family YPTS_1143 PF00313 'Cold-shock' DNA-binding domain YPTS_1144 PF00313 'Cold-shock' DNA-binding domain YPTS_1145 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTS_1147 PF02416 mttA/Hcf106 family YPTS_1148 PF04055 Radical SAM superfamily YPTS_1148 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPTS_1149 PF03099 Biotin/lipoate A/B protein ligase family YPTS_1150 PF04359 Protein of unknown function (DUF493) YPTS_1151 PF00768 D-alanyl-D-alanine carboxypeptidase YPTS_1151 PF07943 Penicillin-binding protein 5, C-terminal domain YPTS_1152 PF05036 Sporulation related domain YPTS_1152 PF03330 Lytic transglycolase YPTS_1153 PF01098 Cell cycle protein YPTS_1154 PF00905 Penicillin binding protein transpeptidase domain YPTS_1154 PF03717 Penicillin-binding Protein dimerisation domain YPTS_1155 PF02590 Predicted SPOUT methyltransferase YPTS_1157 PF01467 Cytidylyltransferase-like YPTS_1158 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPTS_1158 PF06144 DNA polymerase III, delta subunit YPTS_1159 PF04390 Lipopolysaccharide-assembly YPTS_1160 PF08264 Anticodon-binding domain of tRNA YPTS_1160 PF13603 Leucyl-tRNA synthetase, Domain 2 YPTS_1160 PF00133 tRNA synthetases class I (I, L, M and V) YPTS_1161 PF07295 Zinc-ribbon containing domain YPTS_1162 PF00005 ABC transporter YPTS_1163 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1164 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1165 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_1166 PF00795 Carbon-nitrogen hydrolase YPTS_1167 PF00571 CBS domain YPTS_1167 PF03471 Transporter associated domain YPTS_1168 PF02130 Uncharacterized protein family UPF0054 YPTS_1169 PF02562 PhoH-like protein YPTS_1170 PF04055 Radical SAM superfamily YPTS_1170 PF01938 TRAM domain YPTS_1170 PF00919 Uncharacterized protein family UPF0004 YPTS_1171 PF01494 FAD binding domain YPTS_1173 PF13537 Glutamine amidotransferase domain YPTS_1173 PF00733 Asparagine synthase YPTS_1174 PF13344 Haloacid dehalogenase-like hydrolase YPTS_1175 PF00480 ROK family YPTS_1175 PF01047 MarR family YPTS_1176 PF01979 Amidohydrolase family YPTS_1177 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPTS_1178 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPTS_1178 PF02378 Phosphotransferase system, EIIC YPTS_1178 PF00367 phosphotransferase system, EIIB YPTS_1179 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTS_1179 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPTS_1180 PF03573 outer membrane porin, OprD family YPTS_1181 PF03173 Putative carbohydrate binding domain YPTS_1181 PF00728 Glycosyl hydrolase family 20, catalytic domain YPTS_1181 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPTS_1181 PF02838 Glycosyl hydrolase family 20, domain 2 YPTS_1182 PF01475 Ferric uptake regulator family YPTS_1183 PF00258 Flavodoxin YPTS_1184 PF01402 Ribbon-helix-helix protein, copG family YPTS_1187 PF12697 Alpha/beta hydrolase family YPTS_1190 PF13356 Arm DNA-binding domain YPTS_1190 PF00589 Phage integrase family YPTS_1191 PF01527 Transposase YPTS_1192 PF00589 Phage integrase family YPTS_1192 PF13356 Arm DNA-binding domain YPTS_1194 PF06755 CbtA_toxin of type IV toxin-antitoxin system YPTS_1195 PF01695 IstB-like ATP binding protein YPTS_1196 PF02796 Helix-turn-helix domain of resolvase YPTS_1196 PF00665 Integrase core domain YPTS_1197 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YPTS_1198 PF04002 RadC-like JAB domain YPTS_1199 PF06067 Domain of unknown function (DUF932) YPTS_1202 PF01926 50S ribosome-binding GTPase YPTS_1203 PF13148 Protein of unknown function (DUF3987) YPTS_1211 PF13356 Arm DNA-binding domain YPTS_1211 PF00589 Phage integrase family YPTS_1212 PF01668 SmpB protein YPTS_1213 PF03364 Polyketide cyclase / dehydrase and lipid transport YPTS_1214 PF03658 RnfH family Ubiquitin YPTS_1215 PF04355 SmpA / OmlA family YPTS_1216 PF02463 RecF/RecN/SMC N terminal domain YPTS_1217 PF01513 ATP-NAD kinase YPTS_1218 PF01025 GrpE YPTS_1219 PF00285 Citrate synthase, C-terminal domain YPTS_1220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPTS_1221 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPTS_1222 PF02910 Fumarate reductase flavoprotein C-term YPTS_1222 PF00890 FAD binding domain YPTS_1223 PF13085 2Fe-2S iron-sulfur cluster binding domain YPTS_1224 PF16870 2-oxoglutarate dehydrogenase C-terminal YPTS_1224 PF16078 2-oxoglutarate dehydrogenase N-terminus YPTS_1224 PF00676 Dehydrogenase E1 component YPTS_1224 PF02779 Transketolase, pyrimidine binding domain YPTS_1225 PF02817 e3 binding domain YPTS_1225 PF00364 Biotin-requiring enzyme YPTS_1225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPTS_1226 PF00549 CoA-ligase YPTS_1226 PF08442 ATP-grasp domain YPTS_1227 PF02629 CoA binding domain YPTS_1227 PF00549 CoA-ligase YPTS_1228 PF01654 Cytochrome bd terminal oxidase subunit I YPTS_1229 PF02322 Cytochrome bd terminal oxidase subunit II YPTS_1230 PF08173 Membrane bound YbgT-like protein YPTS_1231 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPTS_1232 PF03061 Thioesterase superfamily YPTS_1233 PF01618 MotA/TolQ/ExbB proton channel family YPTS_1234 PF02472 Biopolymer transport protein ExbD/TolR YPTS_1235 PF06519 TolA C-terminal YPTS_1235 PF06519 TolA C-terminal YPTS_1236 PF04052 TolB amino-terminal domain YPTS_1236 PF07676 WD40-like Beta Propeller Repeat YPTS_1237 PF00691 OmpA family YPTS_1238 PF13174 Tetratricopeptide repeat YPTS_1238 PF16331 TolA binding protein trimerisation YPTS_1239 PF02445 Quinolinate synthetase A protein YPTS_1240 PF04973 Nicotinamide mononucleotide transporter YPTS_1241 PF01545 Cation efflux family YPTS_1243 PF00793 DAHP synthetase I family YPTS_1244 PF00300 Histidine phosphatase superfamily (branch 1) YPTS_1246 PF01263 Aldose 1-epimerase YPTS_1247 PF10509 Galactokinase galactose-binding signature YPTS_1247 PF00288 GHMP kinases N terminal domain YPTS_1247 PF08544 GHMP kinases C terminal YPTS_1248 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPTS_1248 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPTS_1249 PF16363 GDP-mannose 4,6 dehydratase YPTS_1252 PF00005 ABC transporter YPTS_1253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_1253 PF03459 TOBE domain YPTS_1254 PF10766 Multidrug efflux pump-associated protein AcrZ YPTS_1256 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1257 PF03459 TOBE domain YPTS_1257 PF00005 ABC transporter YPTS_1259 PF10282 Lactonase, 7-bladed beta-propeller YPTS_1260 PF00202 Aminotransferase class-III YPTS_1261 PF06968 Biotin and Thiamin Synthesis associated domain YPTS_1261 PF04055 Radical SAM superfamily YPTS_1262 PF00155 Aminotransferase class I and II YPTS_1263 PF08241 Methyltransferase domain YPTS_1266 PF04851 Type III restriction enzyme, res subunit YPTS_1266 PF12344 Ultra-violet resistance protein B YPTS_1266 PF00271 Helicase conserved C-terminal domain YPTS_1266 PF17757 UvrB interaction domain YPTS_1266 PF02151 UvrB/uvrC motif YPTS_1267 PF09905 DNA-binding protein VF530 YPTS_1268 PF01933 Uncharacterised protein family UPF0052 YPTS_1270 PF06463 Molybdenum Cofactor Synthesis C YPTS_1270 PF04055 Radical SAM superfamily YPTS_1271 PF01967 MoaC family YPTS_1272 PF02597 ThiS family YPTS_1273 PF02391 MoaE protein YPTS_1274 PF01027 Inhibitor of apoptosis-promoting Bax1 YPTS_1275 PF00732 GMC oxidoreductase YPTS_1275 PF05199 GMC oxidoreductase YPTS_1276 PF00171 Aldehyde dehydrogenase family YPTS_1277 PF00440 Bacterial regulatory proteins, tetR family YPTS_1277 PF13977 BetI-type transcriptional repressor, C-terminal YPTS_1278 PF02028 BCCT, betaine/carnitine/choline family transporter YPTS_1279 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_1279 PF03466 LysR substrate binding domain YPTS_1281 PF01048 Phosphorylase superfamily YPTS_1282 PF03825 Nucleoside H+ symporter YPTS_1283 PF13801 Heavy-metal resistance YPTS_1284 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_1284 PF00512 His Kinase A (phospho-acceptor) domain YPTS_1285 PF00158 Sigma-54 interaction domain YPTS_1285 PF00072 Response regulator receiver domain YPTS_1285 PF02954 Bacterial regulatory protein, Fis family YPTS_1286 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTS_1287 PF03466 LysR substrate binding domain YPTS_1287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_1291 PF00005 ABC transporter YPTS_1292 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_1293 PF09209 Tetracyclin repressor-like, C-terminal domain YPTS_1293 PF00440 Bacterial regulatory proteins, tetR family YPTS_1294 PF00271 Helicase conserved C-terminal domain YPTS_1294 PF00270 DEAD/DEAH box helicase YPTS_1295 PF01548 Transposase YPTS_1295 PF02371 Transposase IS116/IS110/IS902 family YPTS_1296 PF13592 Winged helix-turn helix YPTS_1296 PF13358 DDE superfamily endonuclease YPTS_1301 PF01548 Transposase YPTS_1301 PF02371 Transposase IS116/IS110/IS902 family YPTS_1302 PF02371 Transposase IS116/IS110/IS902 family YPTS_1302 PF01548 Transposase YPTS_1303 PF01207 Dihydrouridine synthase (Dus) YPTS_1305 PF00768 D-alanyl-D-alanine carboxypeptidase YPTS_1306 PF01565 FAD binding domain YPTS_1306 PF09330 D-lactate dehydrogenase, membrane binding YPTS_1307 PF01928 CYTH domain YPTS_1308 PF01844 HNH endonuclease YPTS_1310 PF04226 Transglycosylase associated protein YPTS_1311 PF00005 ABC transporter YPTS_1313 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1314 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1315 PF07308 Protein of unknown function (DUF1456) YPTS_1316 PF13188 PAS domain YPTS_1316 PF02954 Bacterial regulatory protein, Fis family YPTS_1316 PF00158 Sigma-54 interaction domain YPTS_1317 PF02653 Branched-chain amino acid transport system / permease component YPTS_1318 PF02653 Branched-chain amino acid transport system / permease component YPTS_1319 PF00005 ABC transporter YPTS_1320 PF00005 ABC transporter YPTS_1323 PF00581 Rhodanese-like domain YPTS_1324 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTS_1325 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1326 PF00005 ABC transporter YPTS_1327 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1328 PF13520 Amino acid permease YPTS_1329 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPTS_1329 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPTS_1329 PF01276 Orn/Lys/Arg decarboxylase, major domain YPTS_1331 PF00892 EamA-like transporter family YPTS_1332 PF00267 Gram-negative porin YPTS_1333 PF13307 Helicase C-terminal domain YPTS_1333 PF06733 DEAD_2 YPTS_1334 PF06628 Catalase-related immune-responsive YPTS_1334 PF00199 Catalase YPTS_1335 PF07437 YfaZ precursor YPTS_1336 PF03222 Tryptophan/tyrosine permease family YPTS_1337 PF00994 Probable molybdopterin binding domain YPTS_1338 PF03974 Ecotin YPTS_1339 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTS_1340 PF00268 Ribonucleotide reductase, small chain YPTS_1341 PF00317 Ribonucleotide reductase, all-alpha domain YPTS_1341 PF02867 Ribonucleotide reductase, barrel domain YPTS_1341 PF03477 ATP cone domain YPTS_1343 PF03989 DNA gyrase C-terminal domain, beta-propeller YPTS_1343 PF00521 DNA gyrase/topoisomerase IV, subunit A YPTS_1345 PF00072 Response regulator receiver domain YPTS_1345 PF09456 RcsC Alpha-Beta-Loop (ABL) YPTS_1345 PF00512 His Kinase A (phospho-acceptor) domain YPTS_1345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_1346 PF00072 Response regulator receiver domain YPTS_1346 PF00196 Bacterial regulatory proteins, luxR family YPTS_1347 PF16359 RcsD-ABL domain YPTS_1347 PF01627 Hpt domain YPTS_1347 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_1348 PF07690 Major Facilitator Superfamily YPTS_1350 PF00267 Gram-negative porin YPTS_1351 PF00144 Beta-lactamase YPTS_1353 PF12706 Beta-lactamase superfamily domain YPTS_1354 PF02743 Cache domain YPTS_1354 PF00672 HAMP domain YPTS_1354 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTS_1355 PF01278 Omptin family YPTS_1356 PF06183 DinI-like family YPTS_1357 PF00717 Peptidase S24-like YPTS_1357 PF01381 Helix-turn-helix YPTS_1359 PF06530 Phage antitermination protein Q YPTS_1360 PF07005 Sugar-binding N-terminal domain YPTS_1360 PF17042 Nucleotide-binding C-terminal domain YPTS_1361 PF00596 Class II Aldolase and Adducin N-terminal domain YPTS_1362 PF08220 DeoR-like helix-turn-helix domain YPTS_1362 PF00455 DeoR C terminal sensor domain YPTS_1363 PF01261 Xylose isomerase-like TIM barrel YPTS_1367 PF04984 Phage tail sheath protein subtilisin-like domain YPTS_1367 PF17482 Phage tail sheath C-terminal domain YPTS_1375 PF04865 Baseplate J-like protein YPTS_1377 PF07484 Phage Tail Collar Domain YPTS_1378 PF01380 SIS domain YPTS_1378 PF01418 Helix-turn-helix domain, rpiR family YPTS_1380 PF00232 Glycosyl hydrolase family 1 YPTS_1385 PF05638 Type VI secretion system effector, Hcp YPTS_1388 PF00884 Sulfatase YPTS_1388 PF11893 Domain of unknown function (DUF3413) YPTS_1389 PF07208 Protein of unknown function (DUF1414) YPTS_1390 PF04245 37-kD nucleoid-associated bacterial protein YPTS_1391 PF01386 Ribosomal L25p family YPTS_1392 PF04851 Type III restriction enzyme, res subunit YPTS_1392 PF00271 Helicase conserved C-terminal domain YPTS_1393 PF01479 S4 domain YPTS_1393 PF00849 RNA pseudouridylate synthase YPTS_1394 PF07690 Major Facilitator Superfamily YPTS_1395 PF13989 YejG-like protein YPTS_1396 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTS_1396 PF00005 ABC transporter YPTS_1397 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1397 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTS_1398 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1399 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTS_1400 PF00563 EAL domain YPTS_1400 PF12792 CSS motif domain associated with EAL YPTS_1401 PF00877 NlpC/P60 family YPTS_1402 PF01569 PAP2 superfamily YPTS_1403 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPTS_1403 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPTS_1405 PF00392 Bacterial regulatory proteins, gntR family YPTS_1405 PF07729 FCD domain YPTS_1406 PF01232 Mannitol dehydrogenase Rossmann domain YPTS_1406 PF08125 Mannitol dehydrogenase C-terminal domain YPTS_1407 PF03786 D-mannonate dehydratase (UxuA) YPTS_1408 PF01132 Elongation factor P (EF-P) OB domain YPTS_1408 PF09285 Elongation factor P, C-terminal YPTS_1408 PF08207 Elongation factor P (EF-P) KOW-like domain YPTS_1409 PF03222 Tryptophan/tyrosine permease family YPTS_1410 PF03692 Putative zinc- or iron-chelating domain YPTS_1412 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTS_1412 PF01842 ACT domain YPTS_1412 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTS_1415 PF00171 Aldehyde dehydrogenase family YPTS_1416 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTS_1416 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_1421 PF00005 ABC transporter YPTS_1422 PF02653 Branched-chain amino acid transport system / permease component YPTS_1423 PF00293 NUDIX domain YPTS_1424 PF00381 PTS HPr component phosphorylation site YPTS_1424 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTS_1425 PF00294 pfkB family carbohydrate kinase YPTS_1426 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTS_1426 PF02378 Phosphotransferase system, EIIC YPTS_1427 PF00486 Transcriptional regulatory protein, C terminal YPTS_1428 PF17550 Family of unknown function YPTS_1430 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_1430 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_1431 PF13954 PapC N-terminal domain YPTS_1431 PF13953 PapC C-terminal domain YPTS_1431 PF00577 Outer membrane usher protein YPTS_1432 PF01261 Xylose isomerase-like TIM barrel YPTS_1433 PF03601 Conserved hypothetical protein 698 YPTS_1434 PF03466 LysR substrate binding domain YPTS_1434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_1436 PF00324 Amino acid permease YPTS_1438 PF01032 FecCD transport family YPTS_1439 PF00005 ABC transporter YPTS_1440 PF07715 TonB-dependent Receptor Plug Domain YPTS_1440 PF00593 TonB dependent receptor YPTS_1441 PF00043 Glutathione S-transferase, C-terminal domain YPTS_1441 PF13417 Glutathione S-transferase, N-terminal domain YPTS_1445 PF03180 NLPA lipoprotein YPTS_1446 PF00005 ABC transporter YPTS_1446 PF09383 NIL domain YPTS_1447 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1448 PF00768 D-alanyl-D-alanine carboxypeptidase YPTS_1448 PF07943 Penicillin-binding protein 5, C-terminal domain YPTS_1450 PF00455 DeoR C terminal sensor domain YPTS_1450 PF08220 DeoR-like helix-turn-helix domain YPTS_1451 PF01791 DeoC/LacD family aldolase YPTS_1452 PF01569 PAP2 superfamily YPTS_1454 PF06826 Predicted Permease Membrane Region YPTS_1454 PF02080 TrkA-C domain YPTS_1455 PF00462 Glutaredoxin YPTS_1456 PF07214 Protein of unknown function (DUF1418) YPTS_1457 PF10722 Putative bacterial sensory transduction regulator YPTS_1458 PF13416 Bacterial extracellular solute-binding protein YPTS_1459 PF00005 ABC transporter YPTS_1459 PF08402 TOBE domain YPTS_1460 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1461 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1462 PF10767 Protein of unknown function (DUF2593) YPTS_1463 PF05958 tRNA (Uracil-5-)-methyltransferase YPTS_1464 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_1469 PF01032 FecCD transport family YPTS_1470 PF00005 ABC transporter YPTS_1471 PF03059 Nicotianamine synthase protein YPTS_1472 PF10100 Staphylopine dehydrogenase YPTS_1473 PF00892 EamA-like transporter family YPTS_1474 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1475 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1476 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_1477 PF00005 ABC transporter YPTS_1478 PF01817 Chorismate mutase type II YPTS_1479 PF12883 Protein of unknown function (DUF3828) YPTS_1480 PF01370 NAD dependent epimerase/dehydratase family YPTS_1481 PF11066 Protein of unknown function (DUF2867) YPTS_1481 PF13460 NAD(P)H-binding YPTS_1482 PF01212 Beta-eliminating lyase YPTS_1483 PF00205 Thiamine pyrophosphate enzyme, central domain YPTS_1483 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTS_1483 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTS_1484 PF00175 Oxidoreductase NAD-binding domain YPTS_1484 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTS_1484 PF00970 Oxidoreductase FAD-binding domain YPTS_1485 PF03063 Prismane/CO dehydrogenase family YPTS_1486 PF03956 Lysine exporter LysO YPTS_1487 PF11398 Protein of unknown function (DUF2813) YPTS_1489 PF04393 Protein of unknown function (DUF535) YPTS_1490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_1491 PF02687 FtsX-like permease family YPTS_1491 PF12704 MacB-like periplasmic core domain YPTS_1491 PF00005 ABC transporter YPTS_1492 PF00313 'Cold-shock' DNA-binding domain YPTS_1493 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPTS_1494 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_1494 PF07724 AAA domain (Cdc48 subfamily) YPTS_1494 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_1494 PF02861 Clp amino terminal domain, pathogenicity island component YPTS_1494 PF17871 AAA lid domain YPTS_1495 PF01176 Translation initiation factor 1A / IF-1 YPTS_1496 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPTS_1497 PF00005 ABC transporter YPTS_1497 PF00664 ABC transporter transmembrane region YPTS_1498 PF00005 ABC transporter YPTS_1498 PF00664 ABC transporter transmembrane region YPTS_1499 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_1500 PF01037 Lrp/AsnC ligand binding domain YPTS_1501 PF09397 Ftsk gamma domain YPTS_1501 PF17854 FtsK alpha domain YPTS_1501 PF01580 FtsK/SpoIIIE family YPTS_1501 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPTS_1502 PF03548 Outer membrane lipoprotein carrier protein LolA YPTS_1503 PF16193 AAA C-terminal domain YPTS_1503 PF12002 MgsA AAA+ ATPase C terminal YPTS_1503 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_1505 PF02403 Seryl-tRNA synthetase N-terminal domain YPTS_1505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTS_1506 PF07690 Major Facilitator Superfamily YPTS_1507 PF04055 Radical SAM superfamily YPTS_1509 PF01228 Glycine radical YPTS_1509 PF02901 Pyruvate formate lyase-like YPTS_1510 PF01226 Formate/nitrite transporter YPTS_1511 PF18381 YcaO cyclodehydratase C-terminal domain YPTS_1511 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPTS_1512 PF17763 Glutaminase/Asparaginase C-terminal domain YPTS_1512 PF00710 Asparaginase, N-terminal YPTS_1515 PF00266 Aminotransferase class-V YPTS_1516 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPTS_1517 PF02224 Cytidylate kinase YPTS_1518 PF00575 S1 RNA binding domain YPTS_1519 PF00216 Bacterial DNA-binding protein YPTS_1521 PF03772 Competence protein YPTS_1521 PF00753 Metallo-beta-lactamase superfamily YPTS_1522 PF00005 ABC transporter YPTS_1522 PF00664 ABC transporter transmembrane region YPTS_1523 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPTS_1524 PF07063 Domain of unknown function (DUF1338) YPTS_1525 PF00313 'Cold-shock' DNA-binding domain YPTS_1526 PF03966 Trm112p-like protein YPTS_1527 PF02348 Cytidylyltransferase YPTS_1528 PF01636 Phosphotransferase enzyme family YPTS_1530 PF03882 MukF winged-helix domain YPTS_1530 PF17193 MukF C-terminal domain YPTS_1530 PF17192 MukF middle domain YPTS_1531 PF04288 MukE-like family YPTS_1532 PF04310 MukB N-terminal YPTS_1532 PF16330 MukB hinge domain YPTS_1533 PF01471 Putative peptidoglycan binding domain YPTS_1533 PF03734 L,D-transpeptidase catalytic domain YPTS_1534 PF05951 Bacterial protein of unknown function (DUF882) YPTS_1535 PF00753 Metallo-beta-lactamase superfamily YPTS_1536 PF00155 Aminotransferase class I and II YPTS_1537 PF00267 Gram-negative porin YPTS_1538 PF01336 OB-fold nucleic acid binding domain YPTS_1538 PF00152 tRNA synthetases class II (D, K and N) YPTS_1539 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPTS_1539 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPTS_1541 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPTS_1541 PF01433 Peptidase family M1 domain YPTS_1541 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPTS_1542 PF00872 Transposase, Mutator family YPTS_1543 PF01180 Dihydroorotate dehydrogenase YPTS_1544 PF07126 Cell-division protein ZapC YPTS_1545 PF03473 MOSC domain YPTS_1545 PF03476 MOSC N-terminal beta barrel domain YPTS_1545 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTS_1546 PF01170 Putative RNA methylase family UPF0020 YPTS_1546 PF02926 THUMP domain YPTS_1546 PF10672 S-adenosylmethionine-dependent methyltransferase YPTS_1547 PF00005 ABC transporter YPTS_1547 PF16326 ABC transporter C-terminal domain YPTS_1547 PF12848 ABC transporter YPTS_1548 PF04403 Paraquat-inducible protein A YPTS_1549 PF02470 MlaD protein YPTS_1550 PF03886 ABC-type transport auxiliary lipoprotein component YPTS_1551 PF04957 Ribosome modulation factor YPTS_1553 PF01797 Transposase IS200 like YPTS_1554 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTS_1554 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTS_1556 PF07977 FabA-like domain YPTS_1557 PF05362 Lon protease (S16) C-terminal proteolytic domain YPTS_1557 PF13654 AAA domain YPTS_1558 PF06303 MatP N-terminal domain YPTS_1558 PF17414 MatP C-terminal ribbon-helix-helix domain YPTS_1559 PF00691 OmpA family YPTS_1559 PF01389 OmpA-like transmembrane domain YPTS_1560 PF03846 Cell division inhibitor SulA YPTS_1561 PF04993 TfoX N-terminal domain YPTS_1561 PF04994 TfoX C-terminal domain YPTS_1562 PF12805 FUSC-like inner membrane protein yccS YPTS_1563 PF03733 Inner membrane component domain YPTS_1564 PF13361 UvrD-like helicase C-terminal domain YPTS_1564 PF12462 DNA helicase IV / RNA helicase N terminal YPTS_1564 PF00580 UvrD/REP helicase N-terminal domain YPTS_1565 PF02142 MGS-like domain YPTS_1566 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPTS_1567 PF13380 CoA binding domain YPTS_1568 PF08755 Hemimethylated DNA-binding protein YccV like YPTS_1569 PF10672 S-adenosylmethionine-dependent methyltransferase YPTS_1569 PF17785 PUA-like domain YPTS_1570 PF00708 Acylphosphatase YPTS_1571 PF04358 DsrC like protein YPTS_1573 PF13610 DDE domain YPTS_1576 PF08031 Berberine and berberine like YPTS_1576 PF01565 FAD binding domain YPTS_1579 PF07977 FabA-like domain YPTS_1580 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTS_1580 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTS_1582 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPTS_1582 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPTS_1584 PF00378 Enoyl-CoA hydratase/isomerase YPTS_1587 PF00550 Phosphopantetheine attachment site YPTS_1588 PF00698 Acyl transferase domain YPTS_1594 PF00691 OmpA family YPTS_1594 PF05736 OprF membrane domain YPTS_1596 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_1596 PF17871 AAA lid domain YPTS_1596 PF07724 AAA domain (Cdc48 subfamily) YPTS_1596 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_1616 PF12848 ABC transporter YPTS_1616 PF00005 ABC transporter YPTS_1618 PF00899 ThiF family YPTS_1619 PF03454 MoeA C-terminal region (domain IV) YPTS_1619 PF03453 MoeA N-terminal region (domain I and II) YPTS_1619 PF00994 Probable molybdopterin binding domain YPTS_1622 PF00005 ABC transporter YPTS_1623 PF13533 Biotin-lipoyl like YPTS_1626 PF00756 Putative esterase YPTS_1627 PF08240 Alcohol dehydrogenase GroES-like domain YPTS_1627 PF00107 Zinc-binding dehydrogenase YPTS_1628 PF03466 LysR substrate binding domain YPTS_1628 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_1629 PF06779 Uncharacterised MFS-type transporter YbfB YPTS_1630 PF01227 GTP cyclohydrolase I YPTS_1631 PF04235 Protein of unknown function (DUF418) YPTS_1632 PF13407 Periplasmic binding protein domain YPTS_1633 PF00005 ABC transporter YPTS_1634 PF02653 Branched-chain amino acid transport system / permease component YPTS_1635 PF02698 DUF218 domain YPTS_1636 PF00390 Malic enzyme, N-terminal domain YPTS_1636 PF03949 Malic enzyme, NAD binding domain YPTS_1637 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPTS_1637 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPTS_1638 PF04172 LrgB-like family YPTS_1639 PF03788 LrgA family YPTS_1640 PF07690 Major Facilitator Superfamily YPTS_1644 PF01588 Putative tRNA binding domain YPTS_1644 PF09334 tRNA synthetases class I (M) YPTS_1645 PF10609 NUBPL iron-transfer P-loop NTPase YPTS_1646 PF00485 Phosphoribulokinase / Uridine kinase family YPTS_1647 PF00692 dUTPase YPTS_1648 PF05170 AsmA family YPTS_1649 PF03741 Integral membrane protein TerC family YPTS_1649 PF03471 Transporter associated domain YPTS_1649 PF00571 CBS domain YPTS_1650 PF06276 Ferric iron reductase FhuF-like transporter YPTS_1650 PF11575 FhuF 2Fe-2S C-terminal domain YPTS_1651 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPTS_1652 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPTS_1654 PF06276 Ferric iron reductase FhuF-like transporter YPTS_1654 PF04183 IucA / IucC family YPTS_1655 PF00005 ABC transporter YPTS_1656 PF01032 FecCD transport family YPTS_1657 PF01032 FecCD transport family YPTS_1658 PF01497 Periplasmic binding protein YPTS_1659 PF07660 Secretin and TonB N terminus short domain YPTS_1659 PF00593 TonB dependent receptor YPTS_1659 PF07715 TonB-dependent Receptor Plug Domain YPTS_1660 PF06276 Ferric iron reductase FhuF-like transporter YPTS_1660 PF04183 IucA / IucC family YPTS_1661 PF00483 Nucleotidyl transferase YPTS_1662 PF00483 Nucleotidyl transferase YPTS_1663 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPTS_1663 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPTS_1664 PF01502 Phosphoribosyl-AMP cyclohydrolase YPTS_1664 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPTS_1665 PF00977 Histidine biosynthesis protein YPTS_1666 PF00977 Histidine biosynthesis protein YPTS_1667 PF00117 Glutamine amidotransferase class-I YPTS_1668 PF00475 Imidazoleglycerol-phosphate dehydratase YPTS_1669 PF00155 Aminotransferase class I and II YPTS_1670 PF00815 Histidinol dehydrogenase YPTS_1671 PF08029 HisG, C-terminal domain YPTS_1671 PF01634 ATP phosphoribosyltransferase YPTS_1672 PF01370 NAD dependent epimerase/dehydratase family YPTS_1676 PF02653 Branched-chain amino acid transport system / permease component YPTS_1677 PF00005 ABC transporter YPTS_1678 PF00465 Iron-containing alcohol dehydrogenase YPTS_1680 PF13520 Amino acid permease YPTS_1681 PF00929 Exonuclease YPTS_1681 PF08411 Exonuclease C-terminal YPTS_1683 PF04363 Protein of unknown function (DUF496) YPTS_1684 PF09134 Invasin, domain 3 YPTS_1684 PF11924 Inverse autotransporter, beta-domain YPTS_1684 PF02369 Bacterial Ig-like domain (group 1) YPTS_1685 PF07690 Major Facilitator Superfamily YPTS_1686 PF04134 Protein of unknown function, DUF393 YPTS_1689 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTS_1690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPTS_1690 PF13378 Enolase C-terminal domain-like YPTS_1692 PF01070 FMN-dependent dehydrogenase YPTS_1693 PF00764 Arginosuccinate synthase YPTS_1694 PF01554 MatE YPTS_1696 PF01522 Polysaccharide deacetylase YPTS_1698 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPTS_1700 PF02796 Helix-turn-helix domain of resolvase YPTS_1700 PF00665 Integrase core domain YPTS_1701 PF01695 IstB-like ATP binding protein YPTS_1708 PF00593 TonB dependent receptor YPTS_1708 PF07715 TonB-dependent Receptor Plug Domain YPTS_1709 PF13193 AMP-binding enzyme C-terminal domain YPTS_1709 PF00501 AMP-binding enzyme YPTS_1710 PF00975 Thioesterase domain YPTS_1712 PF16197 Ketoacyl-synthetase C-terminal extension YPTS_1712 PF00668 Condensation domain YPTS_1712 PF00550 Phosphopantetheine attachment site YPTS_1712 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTS_1712 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTS_1712 PF00698 Acyl transferase domain YPTS_1713 PF00550 Phosphopantetheine attachment site YPTS_1713 PF08242 Methyltransferase domain YPTS_1713 PF00501 AMP-binding enzyme YPTS_1713 PF00668 Condensation domain YPTS_1715 PF00664 ABC transporter transmembrane region YPTS_1715 PF08021 Siderophore-interacting FAD-binding domain YPTS_1715 PF04954 Siderophore-interacting protein YPTS_1715 PF00005 ABC transporter YPTS_1716 PF00664 ABC transporter transmembrane region YPTS_1716 PF00005 ABC transporter YPTS_1717 PF07690 Major Facilitator Superfamily YPTS_1718 PF00425 chorismate binding enzyme YPTS_1721 PF00072 Response regulator receiver domain YPTS_1721 PF00196 Bacterial regulatory proteins, luxR family YPTS_1722 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPTS_1724 PF03480 Bacterial extracellular solute-binding protein, family 7 YPTS_1725 PF01648 4'-phosphopantetheinyl transferase superfamily YPTS_1725 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPTS_1727 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPTS_1727 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPTS_1728 PF01306 LacY proton/sugar symporter YPTS_1729 PF00356 Bacterial regulatory proteins, lacI family YPTS_1729 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTS_1730 PF06167 Glucose-regulated metallo-peptidase M90 YPTS_1733 PF00664 ABC transporter transmembrane region YPTS_1733 PF00005 ABC transporter YPTS_1736 PF12833 Helix-turn-helix domain YPTS_1738 PF10964 Protein of unknown function (DUF2766) YPTS_1739 PF13996 YobH-like protein YPTS_1740 PF13974 YebO-like protein YPTS_1743 PF00324 Amino acid permease YPTS_1744 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPTS_1746 PF10736 Protein of unknown function (DUF2627) YPTS_1747 PF00313 'Cold-shock' DNA-binding domain YPTS_1749 PF13847 Methyltransferase domain YPTS_1751 PF00563 EAL domain YPTS_1751 PF00990 Diguanylate cyclase, GGDEF domain YPTS_1751 PF08447 PAS fold YPTS_1751 PF13426 PAS domain YPTS_1751 PF05231 MASE1 YPTS_1751 PF08448 PAS fold YPTS_1752 PF07715 TonB-dependent Receptor Plug Domain YPTS_1752 PF00593 TonB dependent receptor YPTS_1753 PF02659 Putative manganese efflux pump YPTS_1754 PF06173 Protein of unknown function (DUF986) YPTS_1755 PF03613 PTS system mannose/fructose/sorbose family IID component YPTS_1756 PF03609 PTS system sorbose-specific iic component YPTS_1757 PF03610 PTS system fructose IIA component YPTS_1757 PF03830 PTS system sorbose subfamily IIB component YPTS_1759 PF03741 Integral membrane protein TerC family YPTS_1759 PF03471 Transporter associated domain YPTS_1760 PF01047 MarR family YPTS_1761 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTS_1762 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTS_1763 PF00171 Aldehyde dehydrogenase family YPTS_1764 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPTS_1765 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPTS_1766 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTS_1767 PF03328 HpcH/HpaI aldolase/citrate lyase family YPTS_1768 PF07690 Major Facilitator Superfamily YPTS_1769 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPTS_1769 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPTS_1770 PF01613 Flavin reductase like domain YPTS_1771 PF03315 Serine dehydratase beta chain YPTS_1771 PF03313 Serine dehydratase alpha chain YPTS_1772 PF00293 NUDIX domain YPTS_1773 PF00425 chorismate binding enzyme YPTS_1773 PF04715 Anthranilate synthase component I, N terminal region YPTS_1774 PF03701 Uncharacterised protein family (UPF0181) YPTS_1775 PF02222 ATP-grasp domain YPTS_1776 PF03880 DbpA RNA binding domain YPTS_1776 PF00271 Helicase conserved C-terminal domain YPTS_1776 PF00270 DEAD/DEAH box helicase YPTS_1777 PF07130 YebG protein YPTS_1779 PF13995 YebF-like protein YPTS_1780 PF00326 Prolyl oligopeptidase family YPTS_1780 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPTS_1782 PF00561 alpha/beta hydrolase fold YPTS_1783 PF06440 DNA polymerase III, theta subunit YPTS_1784 PF00210 Ferritin-like domain YPTS_1785 PF04234 CopC domain YPTS_1787 PF10709 Protein of unknown function (DUF2511) YPTS_1789 PF00872 Transposase, Mutator family YPTS_1792 PF01312 FlhB HrpN YscU SpaS Family YPTS_1793 PF00771 FHIPEP family YPTS_1794 PF06366 Flagellar protein FlhE YPTS_1795 PF09134 Invasin, domain 3 YPTS_1795 PF11924 Inverse autotransporter, beta-domain YPTS_1795 PF02369 Bacterial Ig-like domain (group 1) YPTS_1795 PF07979 Intimin C-type lectin domain YPTS_1796 PF05130 FlgN protein YPTS_1797 PF04316 Anti-sigma-28 factor, FlgM YPTS_1798 PF17656 FlgA N-terminal domain YPTS_1798 PF13144 Chaperone for flagella basal body P-ring formation YPTS_1799 PF00460 Flagella basal body rod protein YPTS_1800 PF00460 Flagella basal body rod protein YPTS_1800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_1801 PF13860 FlgD Ig-like domain YPTS_1801 PF13861 FlgD Tudor-like domain YPTS_1801 PF03963 Flagellar hook capping protein - N-terminal region YPTS_1802 PF00460 Flagella basal body rod protein YPTS_1802 PF07559 Flagellar basal body protein FlaE YPTS_1802 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_1803 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_1803 PF00460 Flagella basal body rod protein YPTS_1804 PF00460 Flagella basal body rod protein YPTS_1804 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_1805 PF02107 Flagellar L-ring protein YPTS_1806 PF02119 Flagellar P-ring protein YPTS_1807 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPTS_1807 PF10135 Rod binding protein YPTS_1808 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_1808 PF00460 Flagella basal body rod protein YPTS_1809 PF00669 Bacterial flagellin N-terminal helical region YPTS_1810 PF04198 Putative sugar-binding domain YPTS_1811 PF00596 Class II Aldolase and Adducin N-terminal domain YPTS_1813 PF02653 Branched-chain amino acid transport system / permease component YPTS_1814 PF13407 Periplasmic binding protein domain YPTS_1815 PF00005 ABC transporter YPTS_1816 PF02653 Branched-chain amino acid transport system / permease component YPTS_1817 PF00294 pfkB family carbohydrate kinase YPTS_1820 PF01311 Bacterial export proteins, family 1 YPTS_1821 PF01313 Bacterial export proteins, family 3 YPTS_1822 PF00813 FliP family YPTS_1823 PF04347 Flagellar biosynthesis protein, FliO YPTS_1824 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTS_1824 PF16973 Flagellar motor switch protein FliN N-terminal YPTS_1825 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTS_1825 PF02154 Flagellar motor switch protein FliM YPTS_1826 PF03748 Flagellar basal body-associated protein FliL YPTS_1827 PF02120 Flagellar hook-length control protein FliK YPTS_1828 PF02050 Flagellar FliJ protein YPTS_1829 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTS_1829 PF18269 T3SS EscN ATPase C-terminal domain YPTS_1830 PF02108 Flagellar assembly protein FliH YPTS_1831 PF14841 FliG middle domain YPTS_1831 PF01706 FliG C-terminal domain YPTS_1831 PF14842 FliG N-terminal domain YPTS_1832 PF08345 Flagellar M-ring protein C-terminal YPTS_1832 PF01514 Secretory protein of YscJ/FliF family YPTS_1833 PF02049 Flagellar hook-basal body complex protein FliE YPTS_1836 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTS_1837 PF01966 HD domain YPTS_1838 PF12833 Helix-turn-helix domain YPTS_1839 PF05400 Flagellar protein FliT YPTS_1840 PF02561 Flagellar protein FliS YPTS_1841 PF02465 Flagellar hook-associated protein 2 N-terminus YPTS_1841 PF07195 Flagellar hook-associated protein 2 C-terminus YPTS_1841 PF07196 Flagellin hook IN motif YPTS_1842 PF00700 Bacterial flagellin C-terminal helical region YPTS_1842 PF08884 Flagellin D3 domain YPTS_1842 PF00669 Bacterial flagellin N-terminal helical region YPTS_1843 PF04542 Sigma-70 region 2 YPTS_1843 PF04545 Sigma-70, region 4 YPTS_1843 PF04539 Sigma-70 region 3 YPTS_1845 PF02899 Phage integrase, N-terminal SAM-like domain YPTS_1846 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_1854 PF14850 DNA-binding domain of Proline dehydrogenase YPTS_1854 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPTS_1854 PF00171 Aldehyde dehydrogenase family YPTS_1854 PF01619 Proline dehydrogenase YPTS_1856 PF00474 Sodium:solute symporter family YPTS_1857 PF03239 Iron permease FTR1 family YPTS_1858 PF09375 Imelysin YPTS_1858 PF13473 Cupredoxin-like domain YPTS_1859 PF04261 Dyp-type peroxidase family YPTS_1860 PF03358 NADPH-dependent FMN reductase YPTS_1861 PF01344 Kelch motif YPTS_1862 PF00324 Amino acid permease YPTS_1863 PF13505 Outer membrane protein beta-barrel domain YPTS_1865 PF06942 GlpM protein YPTS_1866 PF10769 Protein of unknown function (DUF2594) YPTS_1867 PF00072 Response regulator receiver domain YPTS_1867 PF00196 Bacterial regulatory proteins, luxR family YPTS_1868 PF01541 GIY-YIG catalytic domain YPTS_1868 PF02151 UvrB/uvrC motif YPTS_1868 PF08459 UvrC Helix-hairpin-helix N-terminal YPTS_1869 PF01066 CDP-alcohol phosphatidyltransferase YPTS_1870 PF04606 Ogr/Delta-like zinc finger YPTS_1876 PF04984 Phage tail sheath protein subtilisin-like domain YPTS_1876 PF17482 Phage tail sheath C-terminal domain YPTS_1883 PF05638 Type VI secretion system effector, Hcp YPTS_1902 PF05840 Bacteriophage replication gene A protein (GPA) YPTS_1903 PF00145 C-5 cytosine-specific DNA methylase YPTS_1904 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPTS_1905 PF00929 Exonuclease YPTS_1919 PF02899 Phage integrase, N-terminal SAM-like domain YPTS_1919 PF00589 Phage integrase family YPTS_1927 PF05638 Type VI secretion system effector, Hcp YPTS_1933 PF13649 Methyltransferase domain YPTS_1938 PF01527 Transposase YPTS_1950 PF00872 Transposase, Mutator family YPTS_1951 PF00872 Transposase, Mutator family YPTS_1959 PF00480 ROK family YPTS_1961 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTS_1961 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTS_1963 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1964 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_1965 PF00005 ABC transporter YPTS_1965 PF08402 TOBE domain YPTS_1966 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_1966 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_1968 PF00577 Outer membrane usher protein YPTS_1968 PF13954 PapC N-terminal domain YPTS_1968 PF13953 PapC C-terminal domain YPTS_1969 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_1969 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_1971 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_1971 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_1971 PF00072 Response regulator receiver domain YPTS_1971 PF00989 PAS fold YPTS_1971 PF01627 Hpt domain YPTS_1971 PF00512 His Kinase A (phospho-acceptor) domain YPTS_1972 PF00196 Bacterial regulatory proteins, luxR family YPTS_1972 PF00072 Response regulator receiver domain YPTS_1973 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPTS_1973 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPTS_1974 PF01575 MaoC like domain YPTS_1975 PF03328 HpcH/HpaI aldolase/citrate lyase family YPTS_1976 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_1976 PF03466 LysR substrate binding domain YPTS_1980 PF04909 Amidohydrolase YPTS_1982 PF02508 Rnf-Nqr subunit, membrane protein YPTS_1983 PF00155 Aminotransferase class I and II YPTS_1984 PF00324 Amino acid permease YPTS_1985 PF08220 DeoR-like helix-turn-helix domain YPTS_1985 PF00455 DeoR C terminal sensor domain YPTS_1986 PF04960 Glutaminase YPTS_1988 PF03239 Iron permease FTR1 family YPTS_1989 PF10634 Fe2+ transport protein YPTS_1992 PF12704 MacB-like periplasmic core domain YPTS_1992 PF02687 FtsX-like permease family YPTS_1992 PF00005 ABC transporter YPTS_1994 PF00005 ABC transporter YPTS_1994 PF12704 MacB-like periplasmic core domain YPTS_1994 PF02687 FtsX-like permease family YPTS_1995 PF00578 AhpC/TSA family YPTS_1997 PF03848 Tellurite resistance protein TehB YPTS_1997 PF09313 Domain of unknown function (DUF1971) YPTS_1998 PF00557 Metallopeptidase family M24 YPTS_2000 PF01522 Polysaccharide deacetylase YPTS_2000 PF14883 Hypothetical glycosyl hydrolase family 13 YPTS_2001 PF00535 Glycosyl transferase family 2 YPTS_2002 PF13994 PgaD-like protein YPTS_2005 PF02562 PhoH-like protein YPTS_2006 PF01699 Sodium/calcium exchanger protein YPTS_2007 PF00672 HAMP domain YPTS_2007 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPTS_2007 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2007 PF07730 Histidine kinase YPTS_2008 PF00155 Aminotransferase class I and II YPTS_2008 PF00392 Bacterial regulatory proteins, gntR family YPTS_2011 PF00202 Aminotransferase class-III YPTS_2012 PF04958 Arginine N-succinyltransferase beta subunit YPTS_2013 PF00171 Aldehyde dehydrogenase family YPTS_2014 PF04996 Succinylarginine dihydrolase YPTS_2015 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPTS_2016 PF00267 Gram-negative porin YPTS_2017 PF01695 IstB-like ATP binding protein YPTS_2018 PF02796 Helix-turn-helix domain of resolvase YPTS_2018 PF00665 Integrase core domain YPTS_2019 PF00267 Gram-negative porin YPTS_2021 PF01979 Amidohydrolase family YPTS_2022 PF07702 UTRA domain YPTS_2022 PF00392 Bacterial regulatory proteins, gntR family YPTS_2023 PF01979 Amidohydrolase family YPTS_2026 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPTS_2026 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPTS_2027 PF01370 NAD dependent epimerase/dehydratase family YPTS_2040 PF08242 Methyltransferase domain YPTS_2049 PF00512 His Kinase A (phospho-acceptor) domain YPTS_2049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2049 PF00672 HAMP domain YPTS_2050 PF00486 Transcriptional regulatory protein, C terminal YPTS_2050 PF00072 Response regulator receiver domain YPTS_2051 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPTS_2055 PF06071 Protein of unknown function (DUF933) YPTS_2055 PF01926 50S ribosome-binding GTPase YPTS_2056 PF01195 Peptidyl-tRNA hydrolase YPTS_2057 PF10762 Protein of unknown function (DUF2583) YPTS_2058 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPTS_2058 PF14572 Phosphoribosyl synthetase-associated domain YPTS_2060 PF00288 GHMP kinases N terminal domain YPTS_2060 PF08544 GHMP kinases C terminal YPTS_2061 PF03550 Outer membrane lipoprotein LolB YPTS_2062 PF01488 Shikimate / quinate 5-dehydrogenase YPTS_2062 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPTS_2062 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPTS_2063 PF03462 PCRF domain YPTS_2063 PF00472 RF-1 domain YPTS_2064 PF17827 PrmC N-terminal domain YPTS_2064 PF13847 Methyltransferase domain YPTS_2065 PF04247 Invasion gene expression up-regulator, SirB YPTS_2066 PF13369 Transglutaminase-like superfamily YPTS_2067 PF00793 DAHP synthetase I family YPTS_2068 PF00916 Sulfate permease family YPTS_2068 PF01740 STAS domain YPTS_2070 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTS_2072 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2073 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2074 PF00005 ABC transporter YPTS_2074 PF08402 TOBE domain YPTS_2075 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTS_2076 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPTS_2076 PF00480 ROK family YPTS_2077 PF02811 PHP domain YPTS_2078 PF02613 Nitrate reductase delta subunit YPTS_2079 PF07273 Protein of unknown function (DUF1439) YPTS_2080 PF07690 Major Facilitator Superfamily YPTS_2081 PF13302 Acetyltransferase (GNAT) domain YPTS_2082 PF04337 Protein of unknown function, DUF480 YPTS_2083 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTS_2084 PF03023 Lipid II flippase MurJ YPTS_2085 PF08479 POTRA domain, ShlB-type YPTS_2085 PF17287 POTRA domain YPTS_2085 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTS_2088 PF00750 tRNA synthetases class I (R) YPTS_2088 PF05746 DALR anticodon binding domain YPTS_2088 PF03485 Arginyl tRNA synthetase N terminal domain YPTS_2089 PF06185 YecM protein YPTS_2090 PF03932 CutC family YPTS_2091 PF08003 Protein of unknown function (DUF1698) YPTS_2092 PF13649 Methyltransferase domain YPTS_2093 PF01124 MAPEG family YPTS_2094 PF01904 Protein of unknown function DUF72 YPTS_2095 PF02938 GAD domain YPTS_2095 PF00152 tRNA synthetases class II (D, K and N) YPTS_2095 PF01336 OB-fold nucleic acid binding domain YPTS_2096 PF00293 NUDIX domain YPTS_2097 PF01709 Transcriptional regulator YPTS_2098 PF02075 Crossover junction endodeoxyribonuclease RuvC YPTS_2099 PF01330 RuvA N terminal domain YPTS_2099 PF07499 RuvA, C-terminal domain YPTS_2100 PF17864 RuvB AAA lid domain YPTS_2100 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPTS_2100 PF05491 RuvB C-terminal winged helix domain YPTS_2101 PF00950 ABC 3 transport family YPTS_2102 PF00005 ABC transporter YPTS_2103 PF01297 Zinc-uptake complex component A periplasmic YPTS_2104 PF08525 Opacity-associated protein A N-terminal motif YPTS_2104 PF01476 LysM domain YPTS_2104 PF01551 Peptidase family M23 YPTS_2105 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTS_2107 PF00224 Pyruvate kinase, barrel domain YPTS_2107 PF02887 Pyruvate kinase, alpha/beta domain YPTS_2108 PF01380 SIS domain YPTS_2108 PF01418 Helix-turn-helix domain, rpiR family YPTS_2109 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPTS_2109 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPTS_2111 PF01081 KDPG and KHG aldolase YPTS_2112 PF00893 Small Multidrug Resistance protein YPTS_2113 PF00893 Small Multidrug Resistance protein YPTS_2114 PF01042 Endoribonuclease L-PSP YPTS_2115 PF04851 Type III restriction enzyme, res subunit YPTS_2115 PF13307 Helicase C-terminal domain YPTS_2116 PF00814 Glycoprotease family YPTS_2117 PF03843 Outer membrane lipoprotein Slp family YPTS_2118 PF13193 AMP-binding enzyme C-terminal domain YPTS_2118 PF00501 AMP-binding enzyme YPTS_2119 PF01612 3'-5' exonuclease YPTS_2119 PF00570 HRDC domain YPTS_2120 PF03776 Septum formation topological specificity factor MinE YPTS_2121 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPTS_2122 PF05209 Septum formation inhibitor MinC, N-terminal domain YPTS_2122 PF03775 Septum formation inhibitor MinC, C-terminal domain YPTS_2123 PF05166 YcgL domain YPTS_2124 PF13406 Transglycosylase SLT domain YPTS_2125 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTS_2126 PF03692 Putative zinc- or iron-chelating domain YPTS_2128 PF00266 Aminotransferase class-V YPTS_2132 PF02600 Disulfide bond formation protein DsbB YPTS_2133 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPTS_2134 PF00392 Bacterial regulatory proteins, gntR family YPTS_2134 PF07840 FadR C-terminal domain YPTS_2135 PF04293 SpoVR like protein YPTS_2136 PF01266 FAD dependent oxidoreductase YPTS_2137 PF07690 Major Facilitator Superfamily YPTS_2138 PF02678 Pirin YPTS_2138 PF05726 Pirin C-terminal cupin domain YPTS_2139 PF03466 LysR substrate binding domain YPTS_2139 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2141 PF04285 Protein of unknown function (DUF444) YPTS_2143 PF08298 PrkA AAA domain YPTS_2143 PF06798 PrkA serine protein kinase C-terminal domain YPTS_2144 PF06629 MltA-interacting protein MipA YPTS_2145 PF01263 Aldose 1-epimerase YPTS_2146 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTS_2146 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPTS_2147 PF01641 SelR domain YPTS_2148 PF07023 Protein of unknown function (DUF1315) YPTS_2149 PF00857 Isochorismatase family YPTS_2150 PF00710 Asparaginase, N-terminal YPTS_2150 PF17763 Glutaminase/Asparaginase C-terminal domain YPTS_2151 PF01343 Peptidase family S49 YPTS_2152 PF00881 Nitroreductase family YPTS_2153 PF02769 AIR synthase related protein, C-terminal domain YPTS_2153 PF00586 AIR synthase related protein, N-terminal domain YPTS_2155 PF01131 DNA topoisomerase YPTS_2155 PF01751 Toprim domain YPTS_2156 PF07383 Protein of unknown function (DUF1496) YPTS_2157 PF00293 NUDIX domain YPTS_2158 PF03372 Endonuclease/Exonuclease/phosphatase family YPTS_2160 PF03466 LysR substrate binding domain YPTS_2160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2163 PF01842 ACT domain YPTS_2163 PF00551 Formyl transferase YPTS_2164 PF02810 SEC-C motif YPTS_2165 PF00072 Response regulator receiver domain YPTS_2166 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPTS_2166 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPTS_2166 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPTS_2169 PF00816 H-NS histone family YPTS_2170 PF00265 Thymidine kinase YPTS_2171 PF00465 Iron-containing alcohol dehydrogenase YPTS_2171 PF00171 Aldehyde dehydrogenase family YPTS_2172 PF01914 MarC family integral membrane protein YPTS_2173 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTS_2174 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2175 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2175 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTS_2176 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTS_2176 PF00005 ABC transporter YPTS_2177 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTS_2177 PF00005 ABC transporter YPTS_2179 PF04269 Protein of unknown function, DUF440 YPTS_2180 PF13396 Phospholipase_D-nuclease N-terminal YPTS_2180 PF13091 PLD-like domain YPTS_2182 PF13505 Outer membrane protein beta-barrel domain YPTS_2186 PF03795 YCII-related domain YPTS_2188 PF03544 Gram-negative bacterial TonB protein C-terminal YPTS_2189 PF03061 Thioesterase superfamily YPTS_2190 PF04279 Intracellular septation protein A YPTS_2194 PF03922 OmpW family YPTS_2196 PF00290 Tryptophan synthase alpha chain YPTS_2197 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_2198 PF00218 Indole-3-glycerol phosphate synthase YPTS_2198 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPTS_2199 PF02885 Glycosyl transferase family, helical bundle domain YPTS_2199 PF00591 Glycosyl transferase family, a/b domain YPTS_2200 PF00117 Glutamine amidotransferase class-I YPTS_2201 PF04715 Anthranilate synthase component I, N terminal region YPTS_2201 PF00425 chorismate binding enzyme YPTS_2202 PF02811 PHP domain YPTS_2203 PF01300 Telomere recombination YPTS_2204 PF01479 S4 domain YPTS_2204 PF00849 RNA pseudouridylate synthase YPTS_2205 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPTS_2206 PF00106 short chain dehydrogenase YPTS_2207 PF08496 Peptidase family S49 N-terminal YPTS_2207 PF01343 Peptidase family S49 YPTS_2208 PF10692 Protein of unknown function (DUF2498) YPTS_2210 PF01131 DNA topoisomerase YPTS_2210 PF01396 Topoisomerase DNA binding C4 zinc finger YPTS_2210 PF08272 Topoisomerase I zinc-ribbon-like YPTS_2210 PF01751 Toprim domain YPTS_2211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2211 PF03466 LysR substrate binding domain YPTS_2213 PF00330 Aconitase family (aconitate hydratase) YPTS_2213 PF00694 Aconitase C-terminal domain YPTS_2214 PF00925 GTP cyclohydrolase II YPTS_2215 PF01569 PAP2 superfamily YPTS_2216 PF06305 Lipopolysaccharide assembly protein A domain YPTS_2217 PF18073 Rubredoxin metal binding domain YPTS_2219 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPTS_2220 PF01253 Translation initiation factor SUI1 YPTS_2221 PF05433 Glycine zipper 2TM domain YPTS_2222 PF00596 Class II Aldolase and Adducin N-terminal domain YPTS_2224 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPTS_2225 PF04328 Selenoprotein, putative YPTS_2226 PF13722 5TM C-terminal transporter carbon starvation CstA YPTS_2226 PF02554 Carbon starvation protein CstA YPTS_2227 PF08206 Ribonuclease B OB domain YPTS_2227 PF00773 RNB domain YPTS_2227 PF00575 S1 RNA binding domain YPTS_2227 PF17876 Cold shock domain YPTS_2228 PF07690 Major Facilitator Superfamily YPTS_2229 PF01370 NAD dependent epimerase/dehydratase family YPTS_2230 PF10576 Iron-sulfur binding domain of endonuclease III YPTS_2230 PF00633 Helix-hairpin-helix motif YPTS_2230 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTS_2231 PF02508 Rnf-Nqr subunit, membrane protein YPTS_2232 PF04205 FMN-binding domain YPTS_2233 PF03116 NQR2, RnfD, RnfE family YPTS_2234 PF06445 GyrI-like small molecule binding domain YPTS_2234 PF12833 Helix-turn-helix domain YPTS_2235 PF13237 4Fe-4S dicluster domain YPTS_2235 PF10531 SLBB domain YPTS_2235 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPTS_2235 PF13375 RnfC Barrel sandwich hybrid domain YPTS_2236 PF04060 Putative Fe-S cluster YPTS_2237 PF02508 Rnf-Nqr subunit, membrane protein YPTS_2238 PF10754 Protein of unknown function (DUF2569) YPTS_2239 PF00664 ABC transporter transmembrane region YPTS_2239 PF03412 Peptidase C39 family YPTS_2239 PF00005 ABC transporter YPTS_2240 PF13533 Biotin-lipoyl like YPTS_2241 PF00664 ABC transporter transmembrane region YPTS_2241 PF00005 ABC transporter YPTS_2241 PF03412 Peptidase C39 family YPTS_2242 PF02610 L-arabinose isomerase YPTS_2242 PF11762 L-arabinose isomerase C-terminal domain YPTS_2243 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_2244 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTS_2245 PF00005 ABC transporter YPTS_2246 PF02653 Branched-chain amino acid transport system / permease component YPTS_2247 PF02311 AraC-like ligand binding domain YPTS_2247 PF12833 Helix-turn-helix domain YPTS_2248 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTS_2248 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTS_2249 PF13593 SBF-like CPA transporter family (DUF4137) YPTS_2250 PF00962 Adenosine/AMP deaminase YPTS_2253 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPTS_2253 PF00367 phosphotransferase system, EIIB YPTS_2253 PF02378 Phosphotransferase system, EIIC YPTS_2255 PF06097 Bacterial protein of unknown function (DUF945) YPTS_2256 PF01238 Phosphomannose isomerase type I YPTS_2257 PF00206 Lyase YPTS_2257 PF10415 Fumarase C C-terminus YPTS_2258 PF05472 DNA replication terminus site-binding protein (Ter protein) YPTS_2259 PF07690 Major Facilitator Superfamily YPTS_2260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2260 PF03466 LysR substrate binding domain YPTS_2261 PF00480 ROK family YPTS_2263 PF00654 Voltage gated chloride channel YPTS_2264 PF06649 Protein of unknown function (DUF1161) YPTS_2265 PF06932 Protein of unknown function (DUF1283) YPTS_2266 PF00106 short chain dehydrogenase YPTS_2267 PF01590 GAF domain YPTS_2267 PF02954 Bacterial regulatory protein, Fis family YPTS_2267 PF00158 Sigma-54 interaction domain YPTS_2268 PF06932 Protein of unknown function (DUF1283) YPTS_2269 PF00106 short chain dehydrogenase YPTS_2270 PF00158 Sigma-54 interaction domain YPTS_2270 PF01590 GAF domain YPTS_2270 PF02954 Bacterial regulatory protein, Fis family YPTS_2271 PF00171 Aldehyde dehydrogenase family YPTS_2273 PF00892 EamA-like transporter family YPTS_2276 PF00155 Aminotransferase class I and II YPTS_2277 PF03553 Na+/H+ antiporter family YPTS_2279 PF00356 Bacterial regulatory proteins, lacI family YPTS_2281 PF13407 Periplasmic binding protein domain YPTS_2282 PF02653 Branched-chain amino acid transport system / permease component YPTS_2283 PF00005 ABC transporter YPTS_2286 PF09084 NMT1/THI5 like YPTS_2287 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2288 PF00005 ABC transporter YPTS_2289 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPTS_2289 PF01048 Phosphorylase superfamily YPTS_2294 PF00205 Thiamine pyrophosphate enzyme, central domain YPTS_2294 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTS_2294 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTS_2295 PF01842 ACT domain YPTS_2296 PF13419 Haloacid dehalogenase-like hydrolase YPTS_2298 PF00245 Alkaline phosphatase YPTS_2299 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTS_2299 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPTS_2300 PF00027 Cyclic nucleotide-binding domain YPTS_2300 PF13545 Crp-like helix-turn-helix domain YPTS_2301 PF00582 Universal stress protein family YPTS_2302 PF02233 NAD(P) transhydrogenase beta subunit YPTS_2303 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPTS_2303 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPTS_2303 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPTS_2304 PF07338 Protein of unknown function (DUF1471) YPTS_2305 PF13520 Amino acid permease YPTS_2307 PF00072 Response regulator receiver domain YPTS_2307 PF00486 Transcriptional regulatory protein, C terminal YPTS_2308 PF00512 His Kinase A (phospho-acceptor) domain YPTS_2308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2308 PF00672 HAMP domain YPTS_2309 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPTS_2310 PF18807 Tripartite Tc toxins repeat YPTS_2310 PF14431 YwqJ-like deaminase YPTS_2311 PF04264 YceI-like domain YPTS_2312 PF01292 Prokaryotic cytochrome b561 YPTS_2314 PF00089 Trypsin YPTS_2317 PF11898 Domain of unknown function (DUF3418) YPTS_2317 PF04408 Helicase associated domain (HA2) YPTS_2317 PF00271 Helicase conserved C-terminal domain YPTS_2317 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPTS_2317 PF00270 DEAD/DEAH box helicase YPTS_2318 PF02525 Flavodoxin-like fold YPTS_2319 PF00325 Bacterial regulatory proteins, crp family YPTS_2319 PF04198 Putative sugar-binding domain YPTS_2320 PF01232 Mannitol dehydrogenase Rossmann domain YPTS_2320 PF08125 Mannitol dehydrogenase C-terminal domain YPTS_2321 PF07027 Protein of unknown function (DUF1318) YPTS_2322 PF13617 YnbE-like lipoprotein YPTS_2323 PF11739 Dicarboxylate transport YPTS_2324 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTS_2324 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTS_2325 PF03724 META domain YPTS_2326 PF03891 Domain of unknown function (DUF333) YPTS_2327 PF02308 MgtC family YPTS_2328 PF00893 Small Multidrug Resistance protein YPTS_2329 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTS_2329 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPTS_2329 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPTS_2329 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPTS_2329 PF10371 Domain of unknown function YPTS_2330 PF01171 PP-loop family YPTS_2331 PF07859 alpha/beta hydrolase fold YPTS_2331 PF13472 GDSL-like Lipase/Acylhydrolase family YPTS_2334 PF01544 CorA-like Mg2+ transporter protein YPTS_2335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTS_2336 PF00246 Zinc carboxypeptidase YPTS_2337 PF13378 Enolase C-terminal domain-like YPTS_2337 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPTS_2338 PF08534 Redoxin YPTS_2339 PF18024 Helix-turn-helix domain YPTS_2339 PF00158 Sigma-54 interaction domain YPTS_2342 PF05128 Domain of unknown function (DUF697) YPTS_2343 PF04317 YcjX-like family, DUF463 YPTS_2345 PF04024 PspC domain YPTS_2346 PF06667 Phage shock protein B YPTS_2347 PF04012 PspA/IM30 family YPTS_2348 PF02954 Bacterial regulatory protein, Fis family YPTS_2348 PF00158 Sigma-54 interaction domain YPTS_2349 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTS_2350 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2351 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2351 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTS_2352 PF00005 ABC transporter YPTS_2352 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTS_2353 PF00005 ABC transporter YPTS_2355 PF00854 POT family YPTS_2356 PF04893 Yip1 domain YPTS_2357 PF11656 YjbD family (DUF3811) YPTS_2358 PF00043 Glutathione S-transferase, C-terminal domain YPTS_2358 PF02798 Glutathione S-transferase, N-terminal domain YPTS_2359 PF08543 Phosphomethylpyrimidine kinase YPTS_2360 PF01479 S4 domain YPTS_2360 PF00579 tRNA synthetases class I (W and Y) YPTS_2361 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPTS_2361 PF01243 Pyridoxamine 5'-phosphate oxidase YPTS_2362 PF00248 Aldo/keto reductase family YPTS_2363 PF06945 Protein of unknown function (DUF1289) YPTS_2364 PF08019 Phosphoethanolamine transferase EptA/EptB YPTS_2364 PF00884 Sulfatase YPTS_2365 PF00440 Bacterial regulatory proteins, tetR family YPTS_2365 PF16925 Tetracyclin repressor-like, C-terminal domain YPTS_2366 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTS_2367 PF18807 Tripartite Tc toxins repeat YPTS_2367 PF14431 YwqJ-like deaminase YPTS_2368 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPTS_2369 PF00929 Exonuclease YPTS_2370 PF00462 Glutaredoxin YPTS_2372 PF00877 NlpC/P60 family YPTS_2373 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPTS_2373 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPTS_2374 PF00356 Bacterial regulatory proteins, lacI family YPTS_2375 PF03466 LysR substrate binding domain YPTS_2375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2376 PF07690 Major Facilitator Superfamily YPTS_2378 PF00677 Lumazine binding domain YPTS_2379 PF01554 MatE YPTS_2380 PF00224 Pyruvate kinase, barrel domain YPTS_2380 PF02887 Pyruvate kinase, alpha/beta domain YPTS_2381 PF04728 Lipoprotein leucine-zipper YPTS_2382 PF03734 L,D-transpeptidase catalytic domain YPTS_2382 PF01476 LysM domain YPTS_2382 PF17969 L,D-transpeptidase C-terminal domain YPTS_2383 PF02657 Fe-S metabolism associated domain YPTS_2384 PF00266 Aminotransferase class-V YPTS_2385 PF01458 Uncharacterized protein family (UPF0051) YPTS_2386 PF00005 ABC transporter YPTS_2387 PF01458 Uncharacterized protein family (UPF0051) YPTS_2388 PF01521 Iron-sulphur cluster biosynthesis YPTS_2389 PF03061 Thioesterase superfamily YPTS_2390 PF13183 4Fe-4S dicluster domain YPTS_2390 PF01565 FAD binding domain YPTS_2390 PF02913 FAD linked oxidases, C-terminal domain YPTS_2391 PF01594 AI-2E family transporter YPTS_2393 PF02896 PEP-utilising enzyme, TIM barrel domain YPTS_2393 PF00391 PEP-utilising enzyme, mobile domain YPTS_2393 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPTS_2394 PF03618 Kinase/pyrophosphorylase YPTS_2395 PF00793 DAHP synthetase I family YPTS_2396 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPTS_2397 PF03099 Biotin/lipoate A/B protein ligase family YPTS_2397 PF10437 Bacterial lipoate protein ligase C-terminus YPTS_2398 PF00877 NlpC/P60 family YPTS_2400 PF00892 EamA-like transporter family YPTS_2401 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPTS_2402 PF01522 Polysaccharide deacetylase YPTS_2403 PF01370 NAD dependent epimerase/dehydratase family YPTS_2403 PF02911 Formyl transferase, C-terminal domain YPTS_2403 PF00551 Formyl transferase YPTS_2404 PF00535 Glycosyl transferase family 2 YPTS_2405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTS_2406 PF00005 ABC transporter YPTS_2407 PF00255 Glutathione peroxidase YPTS_2408 PF01032 FecCD transport family YPTS_2410 PF00216 Bacterial DNA-binding protein YPTS_2411 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPTS_2411 PF03483 B3/4 domain YPTS_2411 PF03484 tRNA synthetase B5 domain YPTS_2411 PF03147 Ferredoxin-fold anticodon binding domain YPTS_2411 PF01588 Putative tRNA binding domain YPTS_2412 PF01409 tRNA synthetases class II core domain (F) YPTS_2412 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPTS_2413 PF00453 Ribosomal protein L20 YPTS_2414 PF01632 Ribosomal protein L35 YPTS_2415 PF00707 Translation initiation factor IF-3, C-terminal domain YPTS_2415 PF05198 Translation initiation factor IF-3, N-terminal domain YPTS_2416 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTS_2416 PF03129 Anticodon binding domain YPTS_2416 PF02824 TGS domain YPTS_2416 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPTS_2417 PF13619 KTSC domain YPTS_2419 PF01914 MarC family integral membrane protein YPTS_2420 PF01464 Transglycosylase SLT domain YPTS_2421 PF01297 Zinc-uptake complex component A periplasmic YPTS_2422 PF00005 ABC transporter YPTS_2423 PF00950 ABC 3 transport family YPTS_2424 PF00950 ABC 3 transport family YPTS_2427 PF14002 YniB-like protein YPTS_2428 PF13419 Haloacid dehalogenase-like hydrolase YPTS_2429 PF07883 Cupin domain YPTS_2430 PF04962 KduI/IolB family YPTS_2432 PF06917 Periplasmic pectate lyase YPTS_2433 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2434 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2435 PF17912 MalK OB fold domain YPTS_2435 PF03459 TOBE domain YPTS_2435 PF00005 ABC transporter YPTS_2436 PF01547 Bacterial extracellular solute-binding protein YPTS_2437 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPTS_2438 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPTS_2440 PF01510 N-acetylmuramoyl-L-alanine amidase YPTS_2441 PF01614 Bacterial transcriptional regulator YPTS_2441 PF09339 IclR helix-turn-helix domain YPTS_2442 PF14583 Oligogalacturonate lyase YPTS_2443 PF07690 Major Facilitator Superfamily YPTS_2444 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_2444 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_2446 PF13953 PapC C-terminal domain YPTS_2446 PF13954 PapC N-terminal domain YPTS_2446 PF00577 Outer membrane usher protein YPTS_2447 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_2447 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_2448 PF00419 Fimbrial protein YPTS_2450 PF01435 Peptidase family M48 YPTS_2451 PF17804 Tail specific protease N-terminal domain YPTS_2451 PF00595 PDZ domain YPTS_2451 PF03572 Peptidase family S41 YPTS_2451 PF11818 C-terminal domain of tail specific protease (DUF3340) YPTS_2452 PF17516 ProQ C-terminal domain YPTS_2452 PF04352 ProQ/FINO family YPTS_2453 PF13185 GAF domain YPTS_2454 PF04403 Paraquat-inducible protein A YPTS_2455 PF02470 MlaD protein YPTS_2459 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_2459 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_2462 PF07351 Protein of unknown function (DUF1480) YPTS_2470 PF00842 Alanine racemase, C-terminal domain YPTS_2470 PF01168 Alanine racemase, N-terminal domain YPTS_2473 PF13018 Extended Signal Peptide of Type V secretion system YPTS_2473 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTS_2473 PF05658 Head domain of trimeric autotransporter adhesin YPTS_2473 PF05658 Head domain of trimeric autotransporter adhesin YPTS_2473 PF03895 YadA-like membrane anchor domain YPTS_2473 PF03895 YadA-like membrane anchor domain YPTS_2473 PF13018 Extended Signal Peptide of Type V secretion system YPTS_2473 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTS_2474 PF01510 N-acetylmuramoyl-L-alanine amidase YPTS_2475 PF04344 Chemotaxis phosphatase, CheZ YPTS_2476 PF00072 Response regulator receiver domain YPTS_2477 PF00072 Response regulator receiver domain YPTS_2477 PF01339 CheB methylesterase YPTS_2478 PF01739 CheR methyltransferase, SAM binding domain YPTS_2478 PF03705 CheR methyltransferase, all-alpha domain YPTS_2479 PF02203 Tar ligand binding domain homologue YPTS_2479 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTS_2479 PF00672 HAMP domain YPTS_2480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTS_2480 PF02203 Tar ligand binding domain homologue YPTS_2480 PF00672 HAMP domain YPTS_2483 PF01584 CheW-like domain YPTS_2484 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2484 PF09078 CheY binding YPTS_2484 PF01584 CheW-like domain YPTS_2484 PF01627 Hpt domain YPTS_2484 PF02895 Signal transducing histidine kinase, homodimeric domain YPTS_2485 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPTS_2485 PF00691 OmpA family YPTS_2486 PF01618 MotA/TolQ/ExbB proton channel family YPTS_2487 PF05280 Flagellar transcriptional activator (FlhC) YPTS_2488 PF05247 Flagellar transcriptional activator (FlhD) YPTS_2489 PF00690 Cation transporter/ATPase, N-terminus YPTS_2489 PF00689 Cation transporting ATPase, C-terminus YPTS_2490 PF02308 MgtC family YPTS_2491 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTS_2491 PF00672 HAMP domain YPTS_2491 PF02203 Tar ligand binding domain homologue YPTS_2492 PF10781 Dextransucrase DSRB YPTS_2493 PF00313 'Cold-shock' DNA-binding domain YPTS_2494 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPTS_2494 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPTS_2494 PF00703 Glycosyl hydrolases family 2 YPTS_2494 PF16353 Domain of unknown function(DUF4981) YPTS_2494 PF02929 Beta galactosidase small chain YPTS_2496 PF14765 Polyketide synthase dehydratase YPTS_2496 PF08659 KR domain YPTS_2496 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTS_2496 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTS_2496 PF16197 Ketoacyl-synthetase C-terminal extension YPTS_2496 PF00107 Zinc-binding dehydrogenase YPTS_2496 PF08240 Alcohol dehydrogenase GroES-like domain YPTS_2496 PF00698 Acyl transferase domain YPTS_2496 PF00550 Phosphopantetheine attachment site YPTS_2498 PF10777 Inner membrane protein YlaC YPTS_2500 PF01037 Lrp/AsnC ligand binding domain YPTS_2500 PF13404 AsnC-type helix-turn-helix domain YPTS_2502 PF14001 YdfZ protein YPTS_2503 PF00328 Histidine phosphatase superfamily (branch 2) YPTS_2505 PF01638 HxlR-like helix-turn-helix YPTS_2506 PF05368 NmrA-like family YPTS_2507 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTS_2507 PF08447 PAS fold YPTS_2509 PF00356 Bacterial regulatory proteins, lacI family YPTS_2509 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTS_2510 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTS_2511 PF00849 RNA pseudouridylate synthase YPTS_2512 PF00293 NUDIX domain YPTS_2514 PF04356 Protein of unknown function (DUF489) YPTS_2515 PF08328 Adenylosuccinate lyase C-terminal YPTS_2515 PF00206 Lyase YPTS_2518 PF00072 Response regulator receiver domain YPTS_2518 PF00486 Transcriptional regulatory protein, C terminal YPTS_2519 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2519 PF08918 PhoQ Sensor YPTS_2520 PF08007 Cupin superfamily protein YPTS_2521 PF01546 Peptidase family M20/M25/M40 YPTS_2521 PF07687 Peptidase dimerisation domain YPTS_2522 PF02146 Sir2 family YPTS_2523 PF00480 ROK family YPTS_2524 PF02687 FtsX-like permease family YPTS_2524 PF12704 MacB-like periplasmic core domain YPTS_2525 PF00005 ABC transporter YPTS_2526 PF02687 FtsX-like permease family YPTS_2526 PF12704 MacB-like periplasmic core domain YPTS_2527 PF00270 DEAD/DEAH box helicase YPTS_2527 PF02559 CarD-like/TRCF domain YPTS_2527 PF03461 TRCF domain YPTS_2527 PF00271 Helicase conserved C-terminal domain YPTS_2527 PF17757 UvrB interaction domain YPTS_2528 PF05433 Glycine zipper 2TM domain YPTS_2531 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_2532 PF05728 Uncharacterised protein family (UPF0227) YPTS_2533 PF00933 Glycosyl hydrolase family 3 N terminal domain YPTS_2534 PF01636 Phosphotransferase enzyme family YPTS_2535 PF13036 Peptidoglycan-synthase activator LpoB YPTS_2535 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTS_2536 PF07233 Protein of unknown function (DUF1425) YPTS_2537 PF01230 HIT domain YPTS_2538 PF08501 Shikimate dehydrogenase substrate binding domain YPTS_2551 PF02378 Phosphotransferase system, EIIC YPTS_2551 PF00367 phosphotransferase system, EIIB YPTS_2552 PF01026 TatD related DNase YPTS_2553 PF09115 DNA polymerase III, delta subunit, C terminal YPTS_2554 PF02223 Thymidylate kinase YPTS_2555 PF02618 YceG-like family YPTS_2556 PF01063 Amino-transferase class IV YPTS_2557 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTS_2557 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTS_2558 PF00550 Phosphopantetheine attachment site YPTS_2560 PF00698 Acyl transferase domain YPTS_2561 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPTS_2561 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPTS_2562 PF02504 Fatty acid synthesis protein YPTS_2563 PF01783 Ribosomal L32p protein family YPTS_2564 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPTS_2565 PF02545 Maf-like protein YPTS_2566 PF00849 RNA pseudouridylate synthase YPTS_2566 PF01479 S4 domain YPTS_2568 PF12111 Polyribonucleotide phosphorylase C terminal YPTS_2568 PF00575 S1 RNA binding domain YPTS_2568 PF10150 Ribonuclease E/G family YPTS_2569 PF03992 Antibiotic biosynthesis monooxygenase YPTS_2570 PF01979 Amidohydrolase family YPTS_2571 PF06183 DinI-like family YPTS_2572 PF13991 BssS protein family YPTS_2573 PF01266 FAD dependent oxidoreductase YPTS_2575 PF00872 Transposase, Mutator family YPTS_2576 PF00072 Response regulator receiver domain YPTS_2576 PF00196 Bacterial regulatory proteins, luxR family YPTS_2578 PF01594 AI-2E family transporter YPTS_2582 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTS_2584 PF00854 POT family YPTS_2585 PF07119 Protein of unknown function (DUF1375) YPTS_2586 PF00535 Glycosyl transferase family 2 YPTS_2587 PF04349 Periplasmic glucan biosynthesis protein, MdoG YPTS_2588 PF01757 Acyltransferase family YPTS_2590 PF03471 Transporter associated domain YPTS_2590 PF00999 Sodium/hydrogen exchanger family YPTS_2590 PF02080 TrkA-C domain YPTS_2592 PF00765 Autoinducer synthase YPTS_2593 PF00196 Bacterial regulatory proteins, luxR family YPTS_2593 PF03472 Autoinducer binding domain YPTS_2594 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2594 PF03466 LysR substrate binding domain YPTS_2596 PF00083 Sugar (and other) transporter YPTS_2598 PF00248 Aldo/keto reductase family YPTS_2599 PF09618 CRISPR-associated protein (Cas_Csy4) YPTS_2600 PF09615 CRISPR-associated protein (Cas_Csy3) YPTS_2601 PF09614 CRISPR-associated protein (Cas_Csy2) YPTS_2602 PF09611 CRISPR-associated protein (Cas_Csy1) YPTS_2604 PF01867 CRISPR associated protein Cas1 YPTS_2605 PF00924 Mechanosensitive ion channel YPTS_2609 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPTS_2610 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2611 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2613 PF00356 Bacterial regulatory proteins, lacI family YPTS_2614 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTS_2614 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTS_2614 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTS_2614 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTS_2615 PF00005 ABC transporter YPTS_2615 PF17912 MalK OB fold domain YPTS_2618 PF05860 haemagglutination activity domain YPTS_2618 PF15526 Novel toxin 21 YPTS_2618 PF05594 Haemagluttinin repeat YPTS_2618 PF13332 Hemagglutinin repeat YPTS_2618 PF04829 Pre-toxin domain with VENN motif YPTS_2621 PF13018 Extended Signal Peptide of Type V secretion system YPTS_2621 PF05860 haemagglutination activity domain YPTS_2621 PF13332 Hemagglutinin repeat YPTS_2621 PF04829 Pre-toxin domain with VENN motif YPTS_2622 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTS_2622 PF17287 POTRA domain YPTS_2622 PF08479 POTRA domain, ShlB-type YPTS_2623 PF00970 Oxidoreductase FAD-binding domain YPTS_2623 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTS_2623 PF00175 Oxidoreductase NAD-binding domain YPTS_2624 PF00355 Rieske [2Fe-2S] domain YPTS_2624 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPTS_2625 PF02028 BCCT, betaine/carnitine/choline family transporter YPTS_2627 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTS_2628 PF03466 LysR substrate binding domain YPTS_2628 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2629 PF00356 Bacterial regulatory proteins, lacI family YPTS_2630 PF02653 Branched-chain amino acid transport system / permease component YPTS_2631 PF00005 ABC transporter YPTS_2632 PF13407 Periplasmic binding protein domain YPTS_2633 PF00107 Zinc-binding dehydrogenase YPTS_2633 PF08240 Alcohol dehydrogenase GroES-like domain YPTS_2637 PF13505 Outer membrane protein beta-barrel domain YPTS_2638 PF00892 EamA-like transporter family YPTS_2640 PF13649 Methyltransferase domain YPTS_2641 PF00210 Ferritin-like domain YPTS_2643 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_2644 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2645 PF00005 ABC transporter YPTS_2646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTS_2646 PF13426 PAS domain YPTS_2646 PF08447 PAS fold YPTS_2647 PF05971 RNA methyltransferase YPTS_2648 PF07338 Protein of unknown function (DUF1471) YPTS_2649 PF02885 Glycosyl transferase family, helical bundle domain YPTS_2650 PF00501 AMP-binding enzyme YPTS_2650 PF13193 AMP-binding enzyme C-terminal domain YPTS_2651 PF13378 Enolase C-terminal domain-like YPTS_2652 PF00378 Enoyl-CoA hydratase/isomerase YPTS_2653 PF12697 Alpha/beta hydrolase family YPTS_2654 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTS_2654 PF16582 Middle domain of thiamine pyrophosphate YPTS_2654 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTS_2655 PF00425 chorismate binding enzyme YPTS_2657 PF05957 Bacterial protein of unknown function (DUF883) YPTS_2660 PF00920 Dehydratase family YPTS_2661 PF03928 Haem-degrading YPTS_2662 PF07690 Major Facilitator Superfamily YPTS_2663 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTS_2663 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTS_2664 PF00356 Bacterial regulatory proteins, lacI family YPTS_2666 PF00106 short chain dehydrogenase YPTS_2667 PF01202 Shikimate kinase YPTS_2668 PF04074 YhcH/YjgK/YiaL YPTS_2670 PF00361 Proton-conducting membrane transporter YPTS_2671 PF00361 Proton-conducting membrane transporter YPTS_2672 PF00361 Proton-conducting membrane transporter YPTS_2672 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPTS_2673 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPTS_2674 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPTS_2675 PF12838 4Fe-4S dicluster domain YPTS_2676 PF00146 NADH dehydrogenase YPTS_2677 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPTS_2677 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTS_2677 PF00384 Molybdopterin oxidoreductase YPTS_2677 PF01568 Molydopterin dinucleotide binding domain YPTS_2678 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPTS_2678 PF10531 SLBB domain YPTS_2678 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPTS_2680 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPTS_2680 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPTS_2681 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPTS_2682 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPTS_2683 PF03466 LysR substrate binding domain YPTS_2683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2684 PF00155 Aminotransferase class I and II YPTS_2687 PF03600 Citrate transporter YPTS_2687 PF02080 TrkA-C domain YPTS_2688 PF13419 Haloacid dehalogenase-like hydrolase YPTS_2689 PF03887 YfbU domain YPTS_2690 PF04217 Protein of unknown function, DUF412 YPTS_2691 PF00871 Acetokinase family YPTS_2692 PF07085 DRTGG domain YPTS_2692 PF01515 Phosphate acetyl/butaryl transferase YPTS_2693 PF00356 Bacterial regulatory proteins, lacI family YPTS_2693 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTS_2694 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTS_2696 PF03611 PTS system sugar-specific permease component YPTS_2697 PF00293 NUDIX domain YPTS_2698 PF12850 Calcineurin-like phosphoesterase superfamily domain YPTS_2700 PF01370 NAD dependent epimerase/dehydratase family YPTS_2700 PF08338 Domain of unknown function (DUF1731) YPTS_2701 PF00005 ABC transporter YPTS_2702 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2703 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2704 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_2706 PF02441 Flavoprotein YPTS_2707 PF00156 Phosphoribosyl transferase domain YPTS_2708 PF02674 Colicin V production protein YPTS_2709 PF05036 Sporulation related domain YPTS_2710 PF02875 Mur ligase family, glutamate ligase domain YPTS_2710 PF08245 Mur ligase middle domain YPTS_2711 PF17848 Acetyl-coA carboxylase zinc finger domain YPTS_2711 PF01039 Carboxyl transferase domain YPTS_2712 PF09335 SNARE associated Golgi protein YPTS_2713 PF01416 tRNA pseudouridine synthase YPTS_2714 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTS_2714 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTS_2715 PF11890 Domain of unknown function (DUF3410) YPTS_2715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTS_2715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTS_2717 PF00892 EamA-like transporter family YPTS_2719 PF00419 Fimbrial protein YPTS_2720 PF01177 Asp/Glu/Hydantoin racemase YPTS_2721 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTS_2721 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTS_2722 PF01266 FAD dependent oxidoreductase YPTS_2722 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPTS_2723 PF08891 YfcL protein YPTS_2724 PF04315 Elongation factor P hydroxylase YPTS_2725 PF01925 Sulfite exporter TauE/SafE YPTS_2726 PF03411 Penicillin-insensitive murein endopeptidase YPTS_2727 PF01264 Chorismate synthase YPTS_2728 PF05175 Methyltransferase small domain YPTS_2729 PF01713 Smr domain YPTS_2730 PF00300 Histidine phosphatase superfamily (branch 1) YPTS_2733 PF00378 Enoyl-CoA hydratase/isomerase YPTS_2733 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPTS_2733 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPTS_2734 PF02803 Thiolase, C-terminal domain YPTS_2734 PF00108 Thiolase, N-terminal domain YPTS_2735 PF04175 Protein of unknown function (DUF406) YPTS_2736 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPTS_2737 PF04333 MlaA lipoprotein YPTS_2738 PF03918 Cytochrome C biogenesis protein YPTS_2739 PF03918 Cytochrome C biogenesis protein YPTS_2740 PF08534 Redoxin YPTS_2741 PF01578 Cytochrome C assembly protein YPTS_2741 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPTS_2742 PF03100 CcmE YPTS_2743 PF04995 Heme exporter protein D (CcmD) YPTS_2744 PF01578 Cytochrome C assembly protein YPTS_2745 PF03379 CcmB protein YPTS_2746 PF00005 ABC transporter YPTS_2748 PF04011 LemA family YPTS_2750 PF08274 PhnA Zinc-Ribbon YPTS_2750 PF03831 PhnA domain YPTS_2756 PF04717 Type VI secretion system, phage-baseplate injector YPTS_2765 PF13954 PapC N-terminal domain YPTS_2765 PF13953 PapC C-terminal domain YPTS_2765 PF00577 Outer membrane usher protein YPTS_2766 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_2766 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_2767 PF16970 Type-1 fimbrial protein, A YPTS_2768 PF17871 AAA lid domain YPTS_2768 PF07724 AAA domain (Cdc48 subfamily) YPTS_2768 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_2768 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_2779 PF13406 Transglycosylase SLT domain YPTS_2781 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2782 PF00005 ABC transporter YPTS_2784 PF05638 Type VI secretion system effector, Hcp YPTS_2787 PF00384 Molybdopterin oxidoreductase YPTS_2787 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTS_2787 PF01568 Molydopterin dinucleotide binding domain YPTS_2788 PF13247 4Fe-4S dicluster domain YPTS_2788 PF12800 4Fe-4S binding domain YPTS_2789 PF04976 DMSO reductase anchor subunit (DmsC) YPTS_2790 PF02613 Nitrate reductase delta subunit YPTS_2792 PF05643 Putative bacterial lipoprotein (DUF799) YPTS_2794 PF03783 Curli production assembly/transport component CsgG YPTS_2796 PF01292 Prokaryotic cytochrome b561 YPTS_2797 PF00155 Aminotransferase class I and II YPTS_2798 PF07350 Protein of unknown function (DUF1479) YPTS_2799 PF02685 Glucokinase YPTS_2801 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_2801 PF03466 LysR substrate binding domain YPTS_2802 PF00248 Aldo/keto reductase family YPTS_2804 PF01566 Natural resistance-associated macrophage protein YPTS_2805 PF01773 Na+ dependent nucleoside transporter N-terminus YPTS_2805 PF07670 Nucleoside recognition YPTS_2805 PF07662 Na+ dependent nucleoside transporter C-terminus YPTS_2806 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTS_2810 PF12843 Putative quorum-sensing-regulated virulence factor YPTS_2811 PF03120 NAD-dependent DNA ligase OB-fold domain YPTS_2811 PF01653 NAD-dependent DNA ligase adenylation domain YPTS_2811 PF12826 Helix-hairpin-helix motif YPTS_2811 PF00533 BRCA1 C Terminus (BRCT) domain YPTS_2811 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPTS_2812 PF04354 ZipA, C-terminal FtsZ-binding domain YPTS_2814 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_2815 PF00381 PTS HPr component phosphorylation site YPTS_2816 PF05524 PEP-utilising enzyme, N-terminal YPTS_2816 PF00391 PEP-utilising enzyme, mobile domain YPTS_2816 PF02896 PEP-utilising enzyme, TIM barrel domain YPTS_2817 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPTS_2818 PF00512 His Kinase A (phospho-acceptor) domain YPTS_2818 PF16527 Two-component sensor protein CpxA, periplasmic domain YPTS_2818 PF00672 HAMP domain YPTS_2818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2819 PF00072 Response regulator receiver domain YPTS_2819 PF00486 Transcriptional regulatory protein, C terminal YPTS_2820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_2821 PF00005 ABC transporter YPTS_2821 PF12704 MacB-like periplasmic core domain YPTS_2821 PF02687 FtsX-like permease family YPTS_2822 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTS_2822 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_2823 PF00474 Sodium:solute symporter family YPTS_2825 PF05195 Aminopeptidase P, N-terminal domain YPTS_2825 PF00557 Metallopeptidase family M24 YPTS_2826 PF00155 Aminotransferase class I and II YPTS_2828 PF00512 His Kinase A (phospho-acceptor) domain YPTS_2828 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2828 PF00672 HAMP domain YPTS_2829 PF00072 Response regulator receiver domain YPTS_2829 PF00486 Transcriptional regulatory protein, C terminal YPTS_2831 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_2832 PF00005 ABC transporter YPTS_2833 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2834 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2836 PF07690 Major Facilitator Superfamily YPTS_2837 PF01380 SIS domain YPTS_2837 PF01418 Helix-turn-helix domain, rpiR family YPTS_2838 PF04074 YhcH/YjgK/YiaL YPTS_2839 PF00480 ROK family YPTS_2840 PF12468 Type III secretion system leucine rich repeat protein YPTS_2842 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPTS_2843 PF00701 Dihydrodipicolinate synthetase family YPTS_2844 PF04261 Dyp-type peroxidase family YPTS_2845 PF06572 Protein of unknown function (DUF1131) YPTS_2846 PF04076 Bacterial OB fold (BOF) protein YPTS_2847 PF13018 Extended Signal Peptide of Type V secretion system YPTS_2847 PF03797 Autotransporter beta-domain YPTS_2847 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTS_2847 PF03212 Pertactin YPTS_2849 PF00583 Acetyltransferase (GNAT) family YPTS_2853 PF13358 DDE superfamily endonuclease YPTS_2853 PF13592 Winged helix-turn helix YPTS_2854 PF13358 DDE superfamily endonuclease YPTS_2854 PF13592 Winged helix-turn helix YPTS_2855 PF00583 Acetyltransferase (GNAT) family YPTS_2856 PF01218 Coproporphyrinogen III oxidase YPTS_2857 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPTS_2859 PF00390 Malic enzyme, N-terminal domain YPTS_2859 PF03949 Malic enzyme, NAD binding domain YPTS_2859 PF01515 Phosphate acetyl/butaryl transferase YPTS_2860 PF00293 NUDIX domain YPTS_2862 PF03264 NapC/NirT cytochrome c family, N-terminal region YPTS_2863 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPTS_2864 PF00384 Molybdopterin oxidoreductase YPTS_2864 PF01568 Molydopterin dinucleotide binding domain YPTS_2864 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTS_2864 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPTS_2865 PF03927 NapD protein YPTS_2866 PF00037 4Fe-4S binding domain YPTS_2866 PF12800 4Fe-4S binding domain YPTS_2866 PF13187 4Fe-4S dicluster domain YPTS_2867 PF00196 Bacterial regulatory proteins, luxR family YPTS_2867 PF00072 Response regulator receiver domain YPTS_2869 PF00873 AcrB/AcrD/AcrF family YPTS_2871 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPTS_2872 PF04055 Radical SAM superfamily YPTS_2872 PF13186 Iron-sulfur cluster-binding domain YPTS_2873 PF00884 Sulfatase YPTS_2874 PF00005 ABC transporter YPTS_2874 PF08402 TOBE domain YPTS_2875 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2878 PF03960 ArsC family YPTS_2879 PF01546 Peptidase family M20/M25/M40 YPTS_2879 PF07687 Peptidase dimerisation domain YPTS_2880 PF02557 D-alanyl-D-alanine carboxypeptidase YPTS_2881 PF13980 Uncharacterised protein family (UPF0370) YPTS_2883 PF08351 Domain of unknown function (DUF1726) YPTS_2883 PF17176 tRNA-binding domain YPTS_2883 PF05127 Helicase YPTS_2883 PF13718 GNAT acetyltransferase 2 YPTS_2884 PF04284 Protein of unknown function (DUF441) YPTS_2885 PF04228 Putative neutral zinc metallopeptidase YPTS_2887 PF01259 SAICAR synthetase YPTS_2888 PF06804 NlpB/DapX lipoprotein YPTS_2889 PF00701 Dihydrodipicolinate synthetase family YPTS_2890 PF01842 ACT domain YPTS_2891 PF00578 AhpC/TSA family YPTS_2894 PF01594 AI-2E family transporter YPTS_2895 PF07720 Tetratricopeptide repeat YPTS_2895 PF01435 Peptidase family M48 YPTS_2896 PF03960 ArsC family YPTS_2897 PF00308 Bacterial dnaA protein YPTS_2898 PF00860 Permease family YPTS_2900 PF00586 AIR synthase related protein, N-terminal domain YPTS_2900 PF02769 AIR synthase related protein, C-terminal domain YPTS_2901 PF00551 Formyl transferase YPTS_2902 PF13302 Acetyltransferase (GNAT) domain YPTS_2904 PF00005 ABC transporter YPTS_2905 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2906 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2907 PF02503 Polyphosphate kinase middle domain YPTS_2907 PF13089 Polyphosphate kinase N-terminal domain YPTS_2907 PF17941 Polyphosphate kinase C-terminal domain 1 YPTS_2907 PF13090 Polyphosphate kinase C-terminal domain 2 YPTS_2908 PF02541 Ppx/GppA phosphatase family YPTS_2910 PF01769 Divalent cation transporter YPTS_2910 PF03448 MgtE intracellular N domain YPTS_2910 PF00571 CBS domain YPTS_2911 PF00012 Hsp70 protein YPTS_2913 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2914 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_2916 PF00202 Aminotransferase class-III YPTS_2917 PF00155 Aminotransferase class I and II YPTS_2917 PF00392 Bacterial regulatory proteins, gntR family YPTS_2918 PF00005 ABC transporter YPTS_2918 PF08402 TOBE domain YPTS_2919 PF13533 Biotin-lipoyl like YPTS_2920 PF00873 AcrB/AcrD/AcrF family YPTS_2921 PF00873 AcrB/AcrD/AcrF family YPTS_2922 PF07690 Major Facilitator Superfamily YPTS_2923 PF00672 HAMP domain YPTS_2923 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2923 PF00512 His Kinase A (phospho-acceptor) domain YPTS_2924 PF00486 Transcriptional regulatory protein, C terminal YPTS_2924 PF00072 Response regulator receiver domain YPTS_2925 PF07411 Domain of unknown function (DUF1508) YPTS_2927 PF00781 Diacylglycerol kinase catalytic domain YPTS_2930 PF08543 Phosphomethylpyrimidine kinase YPTS_2939 PF05638 Type VI secretion system effector, Hcp YPTS_2940 PF02540 NAD synthase YPTS_2940 PF00117 Glutamine amidotransferase class-I YPTS_2940 PF00958 GMP synthase C terminal domain YPTS_2941 PF00571 CBS domain YPTS_2941 PF00478 IMP dehydrogenase / GMP reductase domain YPTS_2942 PF13742 OB-fold nucleic acid binding domain YPTS_2942 PF02601 Exonuclease VII, large subunit YPTS_2944 PF07191 zinc-ribbons YPTS_2946 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPTS_2946 PF01926 50S ribosome-binding GTPase YPTS_2947 PF13360 PQQ-like domain YPTS_2948 PF09976 Tetratricopeptide repeat-like domain YPTS_2949 PF03129 Anticodon binding domain YPTS_2949 PF13393 Histidyl-tRNA synthetase YPTS_2950 PF04551 GcpE protein YPTS_2951 PF13464 Domain of unknown function (DUF4115) YPTS_2953 PF04055 Radical SAM superfamily YPTS_2954 PF00334 Nucleoside diphosphate kinase YPTS_2957 PF03212 Pertactin YPTS_2957 PF03797 Autotransporter beta-domain YPTS_2957 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTS_2958 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTS_2958 PF03212 Pertactin YPTS_2958 PF03797 Autotransporter beta-domain YPTS_2959 PF14581 SseB protein C-terminal domain YPTS_2959 PF07179 SseB protein N-terminal domain YPTS_2960 PF12404 Peptidase YPTS_2960 PF00883 Cytosol aminopeptidase family, catalytic domain YPTS_2961 PF04384 Iron-sulphur cluster assembly YPTS_2962 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTS_2963 PF00012 Hsp70 protein YPTS_2964 PF00226 DnaJ domain YPTS_2964 PF07743 HSCB C-terminal oligomerisation domain YPTS_2965 PF01521 Iron-sulphur cluster biosynthesis YPTS_2966 PF01592 NifU-like N terminal domain YPTS_2967 PF00266 Aminotransferase class-V YPTS_2968 PF02082 Transcriptional regulator YPTS_2969 PF00588 SpoU rRNA Methylase family YPTS_2970 PF00459 Inositol monophosphatase family YPTS_2971 PF03824 High-affinity nickel-transport protein YPTS_2972 PF06226 Protein of unknown function (DUF1007) YPTS_2973 PF00874 PRD domain YPTS_2974 PF12832 MFS_1 like family YPTS_2975 PF13505 Outer membrane protein beta-barrel domain YPTS_2978 PF00464 Serine hydroxymethyltransferase YPTS_2979 PF00175 Oxidoreductase NAD-binding domain YPTS_2979 PF00042 Globin YPTS_2979 PF00970 Oxidoreductase FAD-binding domain YPTS_2980 PF14502 Helix-turn-helix domain YPTS_2980 PF14503 YhfZ C-terminal domain YPTS_2981 PF00543 Nitrogen regulatory protein P-II YPTS_2982 PF00795 Carbon-nitrogen hydrolase YPTS_2982 PF02540 NAD synthase YPTS_2984 PF00072 Response regulator receiver domain YPTS_2984 PF00158 Sigma-54 interaction domain YPTS_2985 PF13942 YfhG lipoprotein YPTS_2986 PF00512 His Kinase A (phospho-acceptor) domain YPTS_2986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_2990 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPTS_2990 PF02769 AIR synthase related protein, C-terminal domain YPTS_2990 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPTS_2991 PF01464 Transglycosylase SLT domain YPTS_2991 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_2992 PF14437 MafB19-like deaminase YPTS_2994 PF01380 SIS domain YPTS_2995 PF01380 SIS domain YPTS_2995 PF01418 Helix-turn-helix domain, rpiR family YPTS_2996 PF12838 4Fe-4S dicluster domain YPTS_2997 PF01648 4'-phosphopantetheinyl transferase superfamily YPTS_2998 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPTS_2999 PF02565 Recombination protein O C terminal YPTS_2999 PF11967 Recombination protein O N terminal YPTS_3000 PF07650 KH domain YPTS_3000 PF01926 50S ribosome-binding GTPase YPTS_3001 PF14622 Ribonuclease-III-like YPTS_3001 PF00035 Double-stranded RNA binding motif YPTS_3002 PF10502 Signal peptidase, peptidase S26 YPTS_3003 PF06421 GTP-binding protein LepA C-terminus YPTS_3003 PF03144 Elongation factor Tu domain 2 YPTS_3003 PF00009 Elongation factor Tu GTP binding domain YPTS_3003 PF00679 Elongation factor G C-terminus YPTS_3006 PF17188 MucB/RseB C-terminal domain YPTS_3006 PF03888 MucB/RseB N-terminal domain YPTS_3007 PF03873 Anti sigma-E protein RseA, C-terminal domain YPTS_3007 PF03872 Anti sigma-E protein RseA, N-terminal domain YPTS_3008 PF08281 Sigma-70, region 4 YPTS_3008 PF04542 Sigma-70 region 2 YPTS_3009 PF00890 FAD binding domain YPTS_3009 PF02910 Fumarate reductase flavoprotein C-term YPTS_3010 PF05175 Methyltransferase small domain YPTS_3011 PF00270 DEAD/DEAH box helicase YPTS_3011 PF00271 Helicase conserved C-terminal domain YPTS_3013 PF12796 Ankyrin repeats (3 copies) YPTS_3016 PF01228 Glycine radical YPTS_3017 PF03167 Uracil DNA glycosylase superfamily YPTS_3018 PF01470 Pyroglutamyl peptidase YPTS_3021 PF03746 LamB/YcsF family YPTS_3022 PF02626 Carboxyltransferase domain, subdomain A and B YPTS_3023 PF02682 Carboxyltransferase domain, subdomain C and D YPTS_3025 PF01784 NIF3 (NGG1p interacting factor 3) YPTS_3026 PF02112 cAMP phosphodiesterases class-II YPTS_3027 PF00875 DNA photolyase YPTS_3027 PF03441 FAD binding domain of DNA photolyase YPTS_3028 PF08349 Protein of unknown function (DUF1722) YPTS_3030 PF10725 Protein of unknown function (DUF2517) YPTS_3031 PF03814 Potassium-transporting ATPase A subunit YPTS_3033 PF02669 K+-transporting ATPase, c chain YPTS_3034 PF02702 Osmosensitive K+ channel His kinase sensor domain YPTS_3034 PF13492 GAF domain YPTS_3034 PF00512 His Kinase A (phospho-acceptor) domain YPTS_3034 PF13493 Domain of unknown function (DUF4118) YPTS_3034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_3035 PF00486 Transcriptional regulatory protein, C terminal YPTS_3035 PF00072 Response regulator receiver domain YPTS_3039 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTS_3039 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTS_3039 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTS_3039 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTS_3040 PF03925 SeqA protein C-terminal domain YPTS_3040 PF17206 SeqA protein N-terminal domain YPTS_3043 PF04794 YdjC-like protein YPTS_3044 PF07883 Cupin domain YPTS_3044 PF12833 Helix-turn-helix domain YPTS_3045 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPTS_3046 PF02378 Phosphotransferase system, EIIC YPTS_3047 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTS_3048 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTS_3049 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTS_3050 PF02254 TrkA-N domain YPTS_3050 PF07885 Ion channel YPTS_3051 PF06411 HdeA/HdeB family YPTS_3052 PF03824 High-affinity nickel-transport protein YPTS_3053 PF03253 Urea transporter YPTS_3054 PF01774 UreD urease accessory protein YPTS_3055 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPTS_3056 PF01730 UreF YPTS_3057 PF05194 UreE urease accessory protein, C-terminal domain YPTS_3057 PF02814 UreE urease accessory protein, N-terminal domain YPTS_3058 PF00449 Urease alpha-subunit, N-terminal domain YPTS_3058 PF01979 Amidohydrolase family YPTS_3059 PF00699 Urease beta subunit YPTS_3060 PF00547 Urease, gamma subunit YPTS_3062 PF00005 ABC transporter YPTS_3063 PF00005 ABC transporter YPTS_3064 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTS_3064 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3065 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3066 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTS_3067 PF00313 'Cold-shock' DNA-binding domain YPTS_3069 PF06711 Protein of unknown function (DUF1198) YPTS_3070 PF09400 Protein of unknown function (DUF2002) YPTS_3071 PF06392 Acid shock protein repeat YPTS_3073 PF07972 NrdI Flavodoxin like YPTS_3074 PF00317 Ribonucleotide reductase, all-alpha domain YPTS_3074 PF02867 Ribonucleotide reductase, barrel domain YPTS_3074 PF08343 Ribonucleotide reductase N-terminal YPTS_3075 PF00268 Ribonucleotide reductase, small chain YPTS_3076 PF00571 CBS domain YPTS_3076 PF00005 ABC transporter YPTS_3077 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3078 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTS_3081 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPTS_3082 PF00929 Exonuclease YPTS_3083 PF00075 RNase H YPTS_3084 PF08241 Methyltransferase domain YPTS_3085 PF00753 Metallo-beta-lactamase superfamily YPTS_3085 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPTS_3086 PF01476 LysM domain YPTS_3086 PF01464 Transglycosylase SLT domain YPTS_3087 PF03372 Endonuclease/Exonuclease/phosphatase family YPTS_3089 PF00248 Aldo/keto reductase family YPTS_3093 PF09383 NIL domain YPTS_3093 PF00005 ABC transporter YPTS_3094 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3095 PF03180 NLPA lipoprotein YPTS_3096 PF16358 RcsF lipoprotein YPTS_3097 PF01980 tRNA-methyltransferase O YPTS_3097 PF18389 TrmO C-terminal domain YPTS_3098 PF03129 Anticodon binding domain YPTS_3098 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTS_3098 PF04073 Aminoacyl-tRNA editing domain YPTS_3099 PF04170 NlpE N-terminal domain YPTS_3099 PF17185 NlpE C-terminal OB domain YPTS_3100 PF00472 RF-1 domain YPTS_3101 PF07152 YaeQ protein YPTS_3102 PF06786 Uncharacterised protein family (UPF0253) YPTS_3103 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPTS_3104 PF00034 Cytochrome c YPTS_3105 PF01171 PP-loop family YPTS_3105 PF09179 TilS substrate binding domain YPTS_3105 PF11734 TilS substrate C-terminal domain YPTS_3106 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPTS_3107 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPTS_3108 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPTS_3108 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPTS_3108 PF01336 OB-fold nucleic acid binding domain YPTS_3108 PF02811 PHP domain YPTS_3108 PF14579 Helix-hairpin-helix motif YPTS_3109 PF01351 Ribonuclease HII YPTS_3110 PF02684 Lipid-A-disaccharide synthetase YPTS_3111 PF00132 Bacterial transferase hexapeptide (six repeats) YPTS_3111 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPTS_3112 PF07977 FabA-like domain YPTS_3113 PF00132 Bacterial transferase hexapeptide (six repeats) YPTS_3113 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPTS_3114 PF03938 Outer membrane protein (OmpH-like) YPTS_3115 PF01103 Surface antigen YPTS_3115 PF07244 Surface antigen variable number repeat YPTS_3116 PF17820 PDZ domain YPTS_3116 PF02163 Peptidase family M50 YPTS_3118 PF01255 Putative undecaprenyl diphosphate synthase YPTS_3119 PF13288 DXP reductoisomerase C-terminal domain YPTS_3119 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPTS_3119 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPTS_3120 PF01765 Ribosome recycling factor YPTS_3121 PF00696 Amino acid kinase family YPTS_3122 PF00889 Elongation factor TS YPTS_3123 PF00318 Ribosomal protein S2 YPTS_3124 PF00557 Metallopeptidase family M24 YPTS_3125 PF08335 GlnD PII-uridylyltransferase YPTS_3125 PF01909 Nucleotidyltransferase domain YPTS_3125 PF01842 ACT domain YPTS_3125 PF01966 HD domain YPTS_3126 PF14602 Hexapeptide repeat of succinyl-transferase YPTS_3126 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPTS_3126 PF00132 Bacterial transferase hexapeptide (six repeats) YPTS_3127 PF11944 Protein of unknown function (DUF3461) YPTS_3128 PF00258 Flavodoxin YPTS_3129 PF00849 RNA pseudouridylate synthase YPTS_3130 PF04287 tRNA pseudouridine synthase C YPTS_3132 PF07348 Syd protein (SUKH-2) YPTS_3133 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPTS_3133 PF14489 QueF-like protein YPTS_3134 PF03641 Possible lysine decarboxylase YPTS_3134 PF11892 Domain of unknown function (DUF3412) YPTS_3134 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPTS_3135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPTS_3135 PF01367 5'-3' exonuclease, C-terminal SAM fold YPTS_3136 PF01728 FtsJ-like methyltransferase YPTS_3136 PF18125 RlmM ferredoxin-like domain YPTS_3137 PF04241 Protein of unknown function (DUF423) YPTS_3138 PF03466 LysR substrate binding domain YPTS_3138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_3140 PF00266 Aminotransferase class-V YPTS_3141 PF02657 Fe-S metabolism associated domain YPTS_3142 PF00899 ThiF family YPTS_3143 PF06725 3D domain YPTS_3143 PF03562 MltA specific insert domain YPTS_3144 PF01520 N-acetylmuramoyl-L-alanine amidase YPTS_3144 PF11741 AMIN domain YPTS_3145 PF00583 Acetyltransferase (GNAT) family YPTS_3145 PF00696 Amino acid kinase family YPTS_3146 PF13538 UvrD-like helicase C-terminal domain YPTS_3147 PF00580 UvrD/REP helicase N-terminal domain YPTS_3147 PF13361 UvrD-like helicase C-terminal domain YPTS_3147 PF12705 PD-(D/E)XK nuclease superfamily YPTS_3148 PF05193 Peptidase M16 inactive domain YPTS_3148 PF00675 Insulinase (Peptidase family M16) YPTS_3148 PF16187 Middle or third domain of peptidase_M16 YPTS_3149 PF17946 RecC C-terminal domain YPTS_3155 PF00303 Thymidylate synthase YPTS_3156 PF01790 Prolipoprotein diacylglyceryl transferase YPTS_3157 PF00391 PEP-utilising enzyme, mobile domain YPTS_3157 PF05524 PEP-utilising enzyme, N-terminal YPTS_3157 PF01590 GAF domain YPTS_3157 PF02896 PEP-utilising enzyme, TIM barrel domain YPTS_3158 PF00293 NUDIX domain YPTS_3159 PF02976 DNA mismatch repair enzyme MutH YPTS_3160 PF00248 Aldo/keto reductase family YPTS_3163 PF07690 Major Facilitator Superfamily YPTS_3164 PF13193 AMP-binding enzyme C-terminal domain YPTS_3164 PF01553 Acyltransferase YPTS_3164 PF00501 AMP-binding enzyme YPTS_3165 PF00384 Molybdopterin oxidoreductase YPTS_3165 PF01568 Molydopterin dinucleotide binding domain YPTS_3166 PF00356 Bacterial regulatory proteins, lacI family YPTS_3167 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPTS_3167 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPTS_3168 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_3168 PF03466 LysR substrate binding domain YPTS_3169 PF07690 Major Facilitator Superfamily YPTS_3170 PF03466 LysR substrate binding domain YPTS_3170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_3173 PF00672 HAMP domain YPTS_3173 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTS_3173 PF02203 Tar ligand binding domain homologue YPTS_3177 PF01478 Type IV leader peptidase family YPTS_3177 PF06750 Bacterial Peptidase A24 N-terminal domain YPTS_3184 PF08334 Type II secretion system (T2SS), protein G YPTS_3184 PF07963 Prokaryotic N-terminal methylation motif YPTS_3185 PF00482 Type II secretion system (T2SS), protein F YPTS_3187 PF03958 Bacterial type II/III secretion system short domain YPTS_3187 PF00263 Bacterial type II and III secretion system protein YPTS_3190 PF00484 Carbonic anhydrase YPTS_3194 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPTS_3194 PF09093 Lyase, catalytic YPTS_3194 PF09092 Lyase, N terminal YPTS_3194 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPTS_3195 PF00884 Sulfatase YPTS_3196 PF00455 DeoR C terminal sensor domain YPTS_3196 PF08220 DeoR-like helix-turn-helix domain YPTS_3197 PF08013 Tagatose 6 phosphate kinase YPTS_3198 PF01380 SIS domain YPTS_3199 PF03830 PTS system sorbose subfamily IIB component YPTS_3200 PF03609 PTS system sorbose-specific iic component YPTS_3201 PF03613 PTS system mannose/fructose/sorbose family IID component YPTS_3202 PF03610 PTS system fructose IIA component YPTS_3203 PF01979 Amidohydrolase family YPTS_3206 PF04055 Radical SAM superfamily YPTS_3206 PF13186 Iron-sulfur cluster-binding domain YPTS_3207 PF00884 Sulfatase YPTS_3210 PF01116 Fructose-bisphosphate aldolase class-II YPTS_3213 PF00356 Bacterial regulatory proteins, lacI family YPTS_3214 PF07690 Major Facilitator Superfamily YPTS_3215 PF01055 Glycosyl hydrolases family 31 YPTS_3215 PF17137 Domain of unknown function (DUF5110) YPTS_3215 PF13802 Galactose mutarotase-like YPTS_3215 PF16338 Domain of unknown function (DUF4968) YPTS_3216 PF00356 Bacterial regulatory proteins, lacI family YPTS_3217 PF02264 LamB porin YPTS_3218 PF00367 phosphotransferase system, EIIB YPTS_3218 PF02378 Phosphotransferase system, EIIC YPTS_3219 PF08532 Beta-galactosidase trimerisation domain YPTS_3219 PF08533 Beta-galactosidase C-terminal domain YPTS_3219 PF02449 Beta-galactosidase YPTS_3220 PF07745 Glycosyl hydrolase family 53 YPTS_3221 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3222 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3223 PF13416 Bacterial extracellular solute-binding protein YPTS_3224 PF00005 ABC transporter YPTS_3224 PF17912 MalK OB fold domain YPTS_3225 PF00005 ABC transporter YPTS_3226 PF02653 Branched-chain amino acid transport system / permease component YPTS_3227 PF13407 Periplasmic binding protein domain YPTS_3229 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPTS_3230 PF03551 Transcriptional regulator PadR-like family YPTS_3247 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPTS_3248 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPTS_3253 PF00589 Phage integrase family YPTS_3253 PF02899 Phage integrase, N-terminal SAM-like domain YPTS_3266 PF05840 Bacteriophage replication gene A protein (GPA) YPTS_3293 PF13356 Arm DNA-binding domain YPTS_3293 PF14659 Phage integrase, N-terminal SAM-like domain YPTS_3293 PF00589 Phage integrase family YPTS_3294 PF01336 OB-fold nucleic acid binding domain YPTS_3294 PF00152 tRNA synthetases class II (D, K and N) YPTS_3295 PF00472 RF-1 domain YPTS_3295 PF03462 PCRF domain YPTS_3296 PF17768 RecJ OB domain YPTS_3296 PF02272 DHHA1 domain YPTS_3296 PF01368 DHH family YPTS_3297 PF13098 Thioredoxin-like domain YPTS_3297 PF10411 Disulfide bond isomerase protein N-terminus YPTS_3298 PF02899 Phage integrase, N-terminal SAM-like domain YPTS_3298 PF00589 Phage integrase family YPTS_3299 PF00258 Flavodoxin YPTS_3300 PF06123 Inner membrane protein CreD YPTS_3301 PF00512 His Kinase A (phospho-acceptor) domain YPTS_3301 PF00672 HAMP domain YPTS_3301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_3302 PF00072 Response regulator receiver domain YPTS_3302 PF00486 Transcriptional regulatory protein, C terminal YPTS_3304 PF03937 Flavinator of succinate dehydrogenase YPTS_3305 PF01571 Aminomethyltransferase folate-binding domain YPTS_3307 PF03006 Haemolysin-III related YPTS_3309 PF03895 YadA-like membrane anchor domain YPTS_3309 PF13018 Extended Signal Peptide of Type V secretion system YPTS_3309 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTS_3309 PF05658 Head domain of trimeric autotransporter adhesin YPTS_3311 PF02347 Glycine cleavage system P-protein YPTS_3312 PF01597 Glycine cleavage H-protein YPTS_3313 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPTS_3313 PF01571 Aminomethyltransferase folate-binding domain YPTS_3315 PF01494 FAD binding domain YPTS_3316 PF01494 FAD binding domain YPTS_3317 PF05195 Aminopeptidase P, N-terminal domain YPTS_3317 PF00557 Metallopeptidase family M24 YPTS_3318 PF03695 Uncharacterised protein family (UPF0149) YPTS_3319 PF05164 Cell division protein ZapA YPTS_3320 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPTS_3321 PF01842 ACT domain YPTS_3321 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTS_3321 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTS_3322 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPTS_3323 PF03466 LysR substrate binding domain YPTS_3323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_3324 PF04402 Protein of unknown function (DUF541) YPTS_3325 PF01810 LysE type translocator YPTS_3326 PF05552 Conserved TM helix YPTS_3326 PF00924 Mechanosensitive ion channel YPTS_3327 PF01116 Fructose-bisphosphate aldolase class-II YPTS_3328 PF00162 Phosphoglycerate kinase YPTS_3329 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTS_3329 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPTS_3330 PF02780 Transketolase, C-terminal domain YPTS_3330 PF00456 Transketolase, thiamine diphosphate binding domain YPTS_3330 PF02779 Transketolase, pyrimidine binding domain YPTS_3331 PF01435 Peptidase family M48 YPTS_3332 PF00355 Rieske [2Fe-2S] domain YPTS_3333 PF17810 Arginine decarboxylase helical bundle domain YPTS_3333 PF17944 Arginine decarboxylase C-terminal helical extension YPTS_3333 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPTS_3335 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPTS_3335 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPTS_3335 PF02772 S-adenosylmethionine synthetase, central domain YPTS_3336 PF10263 SprT-like family YPTS_3336 PF17283 SprT-like zinc ribbon domain YPTS_3337 PF04231 Endonuclease I YPTS_3339 PF04452 RNA methyltransferase YPTS_3340 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPTS_3340 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPTS_3341 PF02622 Uncharacterized ACR, COG1678 YPTS_3342 PF03652 Holliday junction resolvase YPTS_3343 PF00795 Carbon-nitrogen hydrolase YPTS_3344 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPTS_3345 PF00437 Type II/IV secretion system protein YPTS_3346 PF01168 Alanine racemase, N-terminal domain YPTS_3347 PF03807 NADP oxidoreductase coenzyme F420-dependent YPTS_3347 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPTS_3349 PF02325 YGGT family YPTS_3350 PF02594 Uncharacterised ACR, YggU family COG1872 YPTS_3351 PF01725 Ham1 family YPTS_3352 PF04055 Radical SAM superfamily YPTS_3352 PF06969 HemN C-terminal domain YPTS_3353 PF12146 Serine aminopeptidase, S33 YPTS_3353 PF16671 Actin cross-linking domain YPTS_3353 PF11713 Peptidase C80 family YPTS_3353 PF11647 Membrane Localization Domain YPTS_3353 PF07634 RtxA repeat YPTS_3354 PF11101 Protein of unknown function (DUF2884) YPTS_3355 PF04960 Glutaminase YPTS_3356 PF04320 Protein with unknown function (DUF469) YPTS_3357 PF02390 Putative methyltransferase YPTS_3358 PF14815 NUDIX domain YPTS_3358 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTS_3358 PF00633 Helix-hairpin-helix motif YPTS_3358 PF10576 Iron-sulfur binding domain of endonuclease III YPTS_3359 PF04362 Bacterial Fe(2+) trafficking YPTS_3360 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPTS_3360 PF01464 Transglycosylase SLT domain YPTS_3363 PF07715 TonB-dependent Receptor Plug Domain YPTS_3364 PF02653 Branched-chain amino acid transport system / permease component YPTS_3365 PF00005 ABC transporter YPTS_3366 PF13407 Periplasmic binding protein domain YPTS_3367 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPTS_3367 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPTS_3367 PF01276 Orn/Lys/Arg decarboxylase, major domain YPTS_3370 PF03400 IS1 transposase YPTS_3371 PF12759 InsA C-terminal domain YPTS_3371 PF03811 InsA N-terminal domain YPTS_3376 PF12759 InsA C-terminal domain YPTS_3376 PF03811 InsA N-terminal domain YPTS_3380 PF17871 AAA lid domain YPTS_3380 PF07724 AAA domain (Cdc48 subfamily) YPTS_3380 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_3380 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_3382 PF05736 OprF membrane domain YPTS_3382 PF00691 OmpA family YPTS_3389 PF12759 InsA C-terminal domain YPTS_3389 PF03811 InsA N-terminal domain YPTS_3391 PF02517 CPBP intramembrane metalloprotease YPTS_3394 PF00765 Autoinducer synthase YPTS_3395 PF03472 Autoinducer binding domain YPTS_3395 PF00196 Bacterial regulatory proteins, luxR family YPTS_3399 PF04183 IucA / IucC family YPTS_3399 PF06276 Ferric iron reductase FhuF-like transporter YPTS_3401 PF04183 IucA / IucC family YPTS_3401 PF06276 Ferric iron reductase FhuF-like transporter YPTS_3402 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPTS_3403 PF00593 TonB dependent receptor YPTS_3403 PF07715 TonB-dependent Receptor Plug Domain YPTS_3406 PF00356 Bacterial regulatory proteins, lacI family YPTS_3407 PF00939 Sodium:sulfate symporter transmembrane region YPTS_3419 PF03527 RHS protein YPTS_3419 PF05593 RHS Repeat YPTS_3421 PF04717 Type VI secretion system, phage-baseplate injector YPTS_3422 PF12951 Passenger-associated-transport-repeat YPTS_3423 PF12951 Passenger-associated-transport-repeat YPTS_3424 PF02447 GntP family permease YPTS_3428 PF00664 ABC transporter transmembrane region YPTS_3428 PF00005 ABC transporter YPTS_3429 PF00005 ABC transporter YPTS_3429 PF04954 Siderophore-interacting protein YPTS_3429 PF08021 Siderophore-interacting FAD-binding domain YPTS_3429 PF00664 ABC transporter transmembrane region YPTS_3431 PF00975 Thioesterase domain YPTS_3434 PF00550 Phosphopantetheine attachment site YPTS_3434 PF08242 Methyltransferase domain YPTS_3434 PF00668 Condensation domain YPTS_3434 PF00501 AMP-binding enzyme YPTS_3435 PF00668 Condensation domain YPTS_3435 PF00501 AMP-binding enzyme YPTS_3435 PF08242 Methyltransferase domain YPTS_3435 PF00550 Phosphopantetheine attachment site YPTS_3436 PF07715 TonB-dependent Receptor Plug Domain YPTS_3436 PF00593 TonB dependent receptor YPTS_3437 PF01546 Peptidase family M20/M25/M40 YPTS_3437 PF07687 Peptidase dimerisation domain YPTS_3438 PF03806 AbgT putative transporter family YPTS_3440 PF14496 C-terminal novel E3 ligase, LRR-interacting YPTS_3440 PF12468 Type III secretion system leucine rich repeat protein YPTS_3441 PF03797 Autotransporter beta-domain YPTS_3443 PF07906 ShET2 enterotoxin, N-terminal region YPTS_3444 PF00873 AcrB/AcrD/AcrF family YPTS_3445 PF00529 HlyD membrane-fusion protein of T1SS YPTS_3445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_3446 PF00563 EAL domain YPTS_3446 PF00990 Diguanylate cyclase, GGDEF domain YPTS_3446 PF03707 Bacterial signalling protein N terminal repeat YPTS_3446 PF13188 PAS domain YPTS_3448 PF13333 Integrase core domain YPTS_3448 PF00665 Integrase core domain YPTS_3448 PF13276 HTH-like domain YPTS_3449 PF05433 Glycine zipper 2TM domain YPTS_3453 PF00691 OmpA family YPTS_3453 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPTS_3454 PF01618 MotA/TolQ/ExbB proton channel family YPTS_3455 PF04545 Sigma-70, region 4 YPTS_3455 PF04542 Sigma-70 region 2 YPTS_3460 PF07196 Flagellin hook IN motif YPTS_3460 PF02465 Flagellar hook-associated protein 2 N-terminus YPTS_3460 PF07195 Flagellar hook-associated protein 2 C-terminus YPTS_3461 PF00669 Bacterial flagellin N-terminal helical region YPTS_3461 PF00700 Bacterial flagellin C-terminal helical region YPTS_3461 PF07196 Flagellin hook IN motif YPTS_3462 PF00700 Bacterial flagellin C-terminal helical region YPTS_3462 PF00669 Bacterial flagellin N-terminal helical region YPTS_3462 PF07196 Flagellin hook IN motif YPTS_3463 PF18500 CadC C-terminal domain 1 YPTS_3463 PF00486 Transcriptional regulatory protein, C terminal YPTS_3467 PF00460 Flagella basal body rod protein YPTS_3467 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_3469 PF02119 Flagellar P-ring protein YPTS_3470 PF02107 Flagellar L-ring protein YPTS_3471 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_3471 PF00460 Flagella basal body rod protein YPTS_3472 PF00460 Flagella basal body rod protein YPTS_3472 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_3473 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_3473 PF00460 Flagella basal body rod protein YPTS_3473 PF07559 Flagellar basal body protein FlaE YPTS_3474 PF03963 Flagellar hook capping protein - N-terminal region YPTS_3474 PF13860 FlgD Ig-like domain YPTS_3474 PF13861 FlgD Tudor-like domain YPTS_3475 PF00460 Flagella basal body rod protein YPTS_3475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTS_3476 PF00460 Flagella basal body rod protein YPTS_3477 PF13144 Chaperone for flagella basal body P-ring formation YPTS_3481 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTS_3481 PF18269 T3SS EscN ATPase C-terminal domain YPTS_3484 PF01514 Secretory protein of YscJ/FliF family YPTS_3484 PF08345 Flagellar M-ring protein C-terminal YPTS_3485 PF02049 Flagellar hook-basal body complex protein FliE YPTS_3486 PF00158 Sigma-54 interaction domain YPTS_3486 PF00072 Response regulator receiver domain YPTS_3486 PF02954 Bacterial regulatory protein, Fis family YPTS_3488 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTS_3489 PF00813 FliP family YPTS_3490 PF01313 Bacterial export proteins, family 3 YPTS_3491 PF01311 Bacterial export proteins, family 1 YPTS_3492 PF01312 FlhB HrpN YscU SpaS Family YPTS_3493 PF00771 FHIPEP family YPTS_3497 PF01497 Periplasmic binding protein YPTS_3498 PF09222 Fimbrial adhesin F17-AG, lectin domain YPTS_3498 PF00419 Fimbrial protein YPTS_3499 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_3499 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_3500 PF13954 PapC N-terminal domain YPTS_3500 PF00577 Outer membrane usher protein YPTS_3500 PF13953 PapC C-terminal domain YPTS_3501 PF00419 Fimbrial protein YPTS_3503 PF00704 Glycosyl hydrolases family 18 YPTS_3504 PF18416 N-acetylglucosamine binding protein domain 2 YPTS_3504 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YPTS_3510 PF00263 Bacterial type II and III secretion system protein YPTS_3510 PF04972 BON domain YPTS_3510 PF13629 Pilus formation protein N terminal region YPTS_3513 PF00437 Type II/IV secretion system protein YPTS_3522 PF02472 Biopolymer transport protein ExbD/TolR YPTS_3523 PF01618 MotA/TolQ/ExbB proton channel family YPTS_3524 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTS_3525 PF09335 SNARE associated Golgi protein YPTS_3526 PF12833 Helix-turn-helix domain YPTS_3526 PF06719 AraC-type transcriptional regulator N-terminus YPTS_3527 PF00465 Iron-containing alcohol dehydrogenase YPTS_3528 PF00248 Aldo/keto reductase family YPTS_3529 PF08497 Radical SAM N-terminal YPTS_3529 PF04055 Radical SAM superfamily YPTS_3529 PF11842 Domain of unknown function (DUF3362) YPTS_3530 PF07732 Multicopper oxidase YPTS_3530 PF07731 Multicopper oxidase YPTS_3532 PF01553 Acyltransferase YPTS_3533 PF03989 DNA gyrase C-terminal domain, beta-propeller YPTS_3533 PF00521 DNA gyrase/topoisomerase IV, subunit A YPTS_3534 PF02525 Flavodoxin-like fold YPTS_3535 PF03466 LysR substrate binding domain YPTS_3535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_3536 PF00986 DNA gyrase B subunit, carboxyl terminus YPTS_3536 PF00204 DNA gyrase B YPTS_3536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_3536 PF01751 Toprim domain YPTS_3537 PF05728 Uncharacterised protein family (UPF0227) YPTS_3538 PF00149 Calcineurin-like phosphoesterase YPTS_3539 PF06853 Protein of unknown function (DUF1249) YPTS_3540 PF00293 NUDIX domain YPTS_3541 PF02321 Outer membrane efflux protein YPTS_3543 PF06693 Protein of unknown function (DUF1190) YPTS_3544 PF03738 Glutathionylspermidine synthase preATP-grasp YPTS_3545 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPTS_3546 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPTS_3548 PF04380 Membrane fusogenic activity YPTS_3549 PF13520 Amino acid permease YPTS_3550 PF01467 Cytidylyltransferase-like YPTS_3550 PF00294 pfkB family carbohydrate kinase YPTS_3551 PF03710 Glutamate-ammonia ligase adenylyltransferase YPTS_3551 PF08335 GlnD PII-uridylyltransferase YPTS_3552 PF01928 CYTH domain YPTS_3553 PF08239 Bacterial SH3 domain YPTS_3555 PF01743 Poly A polymerase head domain YPTS_3555 PF12627 Probable RNA and SrmB- binding site of polymerase A YPTS_3555 PF01966 HD domain YPTS_3556 PF02673 Bacitracin resistance protein BacA YPTS_3557 PF02152 Dihydroneopterin aldolase YPTS_3558 PF02660 Glycerol-3-phosphate acyltransferase YPTS_3559 PF00814 Glycoprotease family YPTS_3560 PF01165 Ribosomal protein S21 YPTS_3561 PF01807 CHC2 zinc finger YPTS_3561 PF08275 DNA primase catalytic core, N-terminal domain YPTS_3561 PF10410 DnaB-helicase binding domain of primase YPTS_3561 PF08278 DNA primase DnaG DnaB-binding YPTS_3562 PF03979 Sigma-70 factor, region 1.1 YPTS_3562 PF00140 Sigma-70 factor, region 1.2 YPTS_3562 PF04545 Sigma-70, region 4 YPTS_3562 PF04546 Sigma-70, non-essential region YPTS_3562 PF04539 Sigma-70 region 3 YPTS_3562 PF04542 Sigma-70 region 2 YPTS_3569 PF08400 Prophage tail fibre N-terminal YPTS_3569 PF07484 Phage Tail Collar Domain YPTS_3569 PF03335 Phage tail fibre repeat YPTS_3589 PF05840 Bacteriophage replication gene A protein (GPA) YPTS_3594 PF06892 Phage regulatory protein CII (CP76) YPTS_3596 PF07022 Bacteriophage CI repressor helix-turn-helix domain YPTS_3596 PF16452 Bacteriophage CI repressor C-terminal domain YPTS_3598 PF02899 Phage integrase, N-terminal SAM-like domain YPTS_3598 PF00589 Phage integrase family YPTS_3607 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_3607 PF03466 LysR substrate binding domain YPTS_3611 PF01042 Endoribonuclease L-PSP YPTS_3618 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTS_3618 PF00529 HlyD membrane-fusion protein of T1SS YPTS_3619 PF04632 Fusaric acid resistance protein family YPTS_3621 PF00933 Glycosyl hydrolase family 3 N terminal domain YPTS_3621 PF14310 Fibronectin type III-like domain YPTS_3621 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPTS_3623 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3624 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3625 PF13416 Bacterial extracellular solute-binding protein YPTS_3626 PF00356 Bacterial regulatory proteins, lacI family YPTS_3627 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPTS_3628 PF00005 ABC transporter YPTS_3628 PF17912 MalK OB fold domain YPTS_3628 PF03459 TOBE domain YPTS_3632 PF13332 Hemagglutinin repeat YPTS_3632 PF05860 haemagglutination activity domain YPTS_3632 PF04829 Pre-toxin domain with VENN motif YPTS_3632 PF13018 Extended Signal Peptide of Type V secretion system YPTS_3637 PF04829 Pre-toxin domain with VENN motif YPTS_3637 PF13332 Hemagglutinin repeat YPTS_3638 PF07262 CDI immunity protein YPTS_3639 PF04829 Pre-toxin domain with VENN motif YPTS_3639 PF13332 Hemagglutinin repeat YPTS_3641 PF13332 Hemagglutinin repeat YPTS_3641 PF04829 Pre-toxin domain with VENN motif YPTS_3641 PF13018 Extended Signal Peptide of Type V secretion system YPTS_3641 PF05860 haemagglutination activity domain YPTS_3643 PF04829 Pre-toxin domain with VENN motif YPTS_3643 PF05594 Haemagluttinin repeat YPTS_3643 PF13332 Hemagglutinin repeat YPTS_3643 PF05860 haemagglutination activity domain YPTS_3643 PF15526 Novel toxin 21 YPTS_3645 PF05860 haemagglutination activity domain YPTS_3645 PF13332 Hemagglutinin repeat YPTS_3645 PF13018 Extended Signal Peptide of Type V secretion system YPTS_3645 PF04829 Pre-toxin domain with VENN motif YPTS_3646 PF08479 POTRA domain, ShlB-type YPTS_3646 PF17287 POTRA domain YPTS_3646 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTS_3647 PF00092 von Willebrand factor type A domain YPTS_3648 PF02342 TerD domain YPTS_3649 PF00092 von Willebrand factor type A domain YPTS_3650 PF00092 von Willebrand factor type A domain YPTS_3653 PF03729 Short repeat of unknown function (DUF308) YPTS_3654 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_3654 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTS_3655 PF05175 Methyltransferase small domain YPTS_3656 PF03797 Autotransporter beta-domain YPTS_3657 PF01863 Protein of unknown function DUF45 YPTS_3658 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTS_3659 PF00375 Sodium:dicarboxylate symporter family YPTS_3660 PF10688 Bacterial inner membrane protein YPTS_3661 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPTS_3661 PF08666 SAF domain YPTS_3662 PF01232 Mannitol dehydrogenase Rossmann domain YPTS_3662 PF08125 Mannitol dehydrogenase C-terminal domain YPTS_3663 PF02614 Glucuronate isomerase YPTS_3664 PF07690 Major Facilitator Superfamily YPTS_3665 PF07729 FCD domain YPTS_3665 PF00392 Bacterial regulatory proteins, gntR family YPTS_3667 PF09335 SNARE associated Golgi protein YPTS_3668 PF13721 SecD export protein N-terminal TM region YPTS_3670 PF05957 Bacterial protein of unknown function (DUF883) YPTS_3671 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPTS_3673 PF07681 DoxX YPTS_3674 PF13409 Glutathione S-transferase, N-terminal domain YPTS_3675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_3675 PF03466 LysR substrate binding domain YPTS_3676 PF17954 Quercetinase C-terminal cupin domain YPTS_3676 PF02678 Pirin YPTS_3677 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTS_3678 PF04348 LppC putative lipoprotein YPTS_3679 PF02021 Uncharacterised protein family UPF0102 YPTS_3680 PF13580 SIS domain YPTS_3681 PF04972 BON domain YPTS_3682 PF00912 Transglycosylase YPTS_3684 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_3684 PF00072 Response regulator receiver domain YPTS_3684 PF00989 PAS fold YPTS_3684 PF01627 Hpt domain YPTS_3684 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPTS_3684 PF00512 His Kinase A (phospho-acceptor) domain YPTS_3686 PF04055 Radical SAM superfamily YPTS_3686 PF16199 Radical_SAM C-terminal domain YPTS_3687 PF00310 Glutamine amidotransferases class-II YPTS_3687 PF01645 Conserved region in glutamate synthase YPTS_3687 PF04898 Glutamate synthase central domain YPTS_3687 PF01493 GXGXG motif YPTS_3688 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_3688 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPTS_3690 PF04386 Stringent starvation protein B YPTS_3691 PF00043 Glutathione S-transferase, C-terminal domain YPTS_3691 PF02798 Glutathione S-transferase, N-terminal domain YPTS_3692 PF00380 Ribosomal protein S9/S16 YPTS_3693 PF00572 Ribosomal protein L13 YPTS_3694 PF03969 AFG1-like ATPase YPTS_3696 PF06295 Protein of unknown function (DUF1043) YPTS_3697 PF13180 PDZ domain YPTS_3697 PF00595 PDZ domain YPTS_3698 PF13180 PDZ domain YPTS_3699 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPTS_3700 PF01722 BolA-like protein YPTS_3701 PF13466 STAS domain YPTS_3702 PF05494 MlaC protein YPTS_3703 PF02470 MlaD protein YPTS_3704 PF02405 Permease MlaE YPTS_3705 PF00005 ABC transporter YPTS_3706 PF01699 Sodium/calcium exchanger protein YPTS_3707 PF00571 CBS domain YPTS_3707 PF01380 SIS domain YPTS_3709 PF06835 Lipopolysaccharide-assembly, LptC-related YPTS_3710 PF03968 OstA-like protein YPTS_3711 PF00005 ABC transporter YPTS_3711 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPTS_3712 PF04963 Sigma-54 factor, core binding domain YPTS_3712 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPTS_3712 PF04552 Sigma-54, DNA binding domain YPTS_3713 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPTS_3714 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTS_3715 PF03668 P-loop ATPase protein family YPTS_3716 PF00381 PTS HPr component phosphorylation site YPTS_3717 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPTS_3717 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPTS_3718 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPTS_3718 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPTS_3719 PF01042 Endoribonuclease L-PSP YPTS_3721 PF00356 Bacterial regulatory proteins, lacI family YPTS_3722 PF00367 phosphotransferase system, EIIB YPTS_3722 PF02378 Phosphotransferase system, EIIC YPTS_3723 PF00128 Alpha amylase, catalytic domain YPTS_3723 PF11941 Domain of unknown function (DUF3459) YPTS_3724 PF14760 Rnk N-terminus YPTS_3724 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTS_3725 PF07361 Cytochrome b562 YPTS_3727 PF01523 Putative modulator of DNA gyrase YPTS_3728 PF04751 Protein of unknown function (DUF615) YPTS_3729 PF01337 Barstar (barnase inhibitor) YPTS_3731 PF00171 Aldehyde dehydrogenase family YPTS_3732 PF04632 Fusaric acid resistance protein family YPTS_3733 PF13533 Biotin-lipoyl like YPTS_3734 PF07869 Protein of unknown function (DUF1656) YPTS_3735 PF03466 LysR substrate binding domain YPTS_3735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTS_3738 PF18413 Neuraminidase-like domain YPTS_3738 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPTS_3739 PF12255 Insecticide toxin TcdB middle/C-terminal region YPTS_3739 PF12256 Insecticide toxin TcdB middle/N-terminal region YPTS_3739 PF03534 Salmonella virulence plasmid 65kDa B protein YPTS_3744 PF14431 YwqJ-like deaminase YPTS_3744 PF18807 Tripartite Tc toxins repeat YPTS_3745 PF01523 Putative modulator of DNA gyrase YPTS_3746 PF00795 Carbon-nitrogen hydrolase YPTS_3747 PF13502 AsmA-like C-terminal region YPTS_3747 PF13116 Protein of unknown function YPTS_3748 PF00575 S1 RNA binding domain YPTS_3748 PF10150 Ribonuclease E/G family YPTS_3749 PF02545 Maf-like protein YPTS_3750 PF04093 rod shape-determining protein MreD YPTS_3751 PF04085 rod shape-determining protein MreC YPTS_3753 PF17157 Gammaproteobacterial periplasmic sensor domain YPTS_3753 PF00563 EAL domain YPTS_3753 PF00990 Diguanylate cyclase, GGDEF domain YPTS_3754 PF08240 Alcohol dehydrogenase GroES-like domain YPTS_3754 PF00107 Zinc-binding dehydrogenase YPTS_3755 PF00174 Oxidoreductase molybdopterin binding domain YPTS_3756 PF01794 Ferric reductase like transmembrane component YPTS_3757 PF01220 Dehydroquinase class II YPTS_3758 PF00364 Biotin-requiring enzyme YPTS_3759 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPTS_3759 PF02785 Biotin carboxylase C-terminal domain YPTS_3759 PF00289 Biotin carboxylase, N-terminal domain YPTS_3761 PF06196 Protein of unknown function (DUF997) YPTS_3762 PF00474 Sodium:solute symporter family YPTS_3764 PF01207 Dihydrouridine synthase (Dus) YPTS_3765 PF02954 Bacterial regulatory protein, Fis family YPTS_3768 PF07690 Major Facilitator Superfamily YPTS_3769 PF02627 Carboxymuconolactone decarboxylase family YPTS_3770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPTS_3770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPTS_3771 PF00753 Metallo-beta-lactamase superfamily YPTS_3772 PF05433 Glycine zipper 2TM domain YPTS_3774 PF00313 'Cold-shock' DNA-binding domain YPTS_3775 PF00313 'Cold-shock' DNA-binding domain YPTS_3776 PF00313 'Cold-shock' DNA-binding domain YPTS_3780 PF02798 Glutathione S-transferase, N-terminal domain YPTS_3781 PF01380 SIS domain YPTS_3781 PF00571 CBS domain YPTS_3782 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_3782 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTS_3784 PF02653 Branched-chain amino acid transport system / permease component YPTS_3785 PF00005 ABC transporter YPTS_3787 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTS_3789 PF00999 Sodium/hydrogen exchanger family YPTS_3790 PF00860 Permease family YPTS_3791 PF04221 RelB antitoxin YPTS_3792 PF00005 ABC transporter YPTS_3793 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3794 PF00296 Luciferase-like monooxygenase YPTS_3795 PF09084 NMT1/THI5 like YPTS_3796 PF03358 NADPH-dependent FMN reductase YPTS_3798 PF00294 pfkB family carbohydrate kinase YPTS_3799 PF05025 RbsD / FucU transport protein family YPTS_3800 PF12833 Helix-turn-helix domain YPTS_3800 PF02311 AraC-like ligand binding domain YPTS_3801 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTS_3801 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTS_3803 PF04717 Type VI secretion system, phage-baseplate injector YPTS_3805 PF05593 RHS Repeat YPTS_3805 PF03527 RHS protein YPTS_3807 PF04717 Type VI secretion system, phage-baseplate injector YPTS_3813 PF07724 AAA domain (Cdc48 subfamily) YPTS_3813 PF17871 AAA lid domain YPTS_3813 PF10431 C-terminal, D2-small domain, of ClpB protein YPTS_3813 PF00004 ATPase family associated with various cellular activities (AAA) YPTS_3823 PF05638 Type VI secretion system effector, Hcp YPTS_3826 PF07148 Maltose operon periplasmic protein precursor (MalM) YPTS_3827 PF02264 LamB porin YPTS_3828 PF17912 MalK OB fold domain YPTS_3828 PF00005 ABC transporter YPTS_3830 PF01547 Bacterial extracellular solute-binding protein YPTS_3831 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3831 PF14785 Maltose transport system permease protein MalF P2 domain YPTS_3832 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3833 PF06146 Phosphate-starvation-inducible E YPTS_3835 PF00342 Phosphoglucose isomerase YPTS_3836 PF00696 Amino acid kinase family YPTS_3836 PF01842 ACT domain YPTS_3837 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTS_3837 PF17287 POTRA domain YPTS_3837 PF08479 POTRA domain, ShlB-type YPTS_3838 PF05860 haemagglutination activity domain YPTS_3838 PF13332 Hemagglutinin repeat YPTS_3839 PF00809 Pterin binding enzyme YPTS_3839 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPTS_3839 PF02607 B12 binding domain YPTS_3839 PF02310 B12 binding domain YPTS_3839 PF02574 Homocysteine S-methyltransferase YPTS_3840 PF01614 Bacterial transcriptional regulator YPTS_3840 PF09339 IclR helix-turn-helix domain YPTS_3841 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPTS_3842 PF00463 Isocitrate lyase family YPTS_3843 PF01274 Malate synthase YPTS_3844 PF04204 Homoserine O-succinyltransferase YPTS_3851 PF00132 Bacterial transferase hexapeptide (six repeats) YPTS_3852 PF08501 Shikimate dehydrogenase substrate binding domain YPTS_3852 PF01488 Shikimate / quinate 5-dehydrogenase YPTS_3852 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPTS_3853 PF01300 Telomere recombination YPTS_3854 PF01396 Topoisomerase DNA binding C4 zinc finger YPTS_3855 PF04361 Protein of unknown function (DUF494) YPTS_3856 PF17782 DprA winged helix domain YPTS_3856 PF02481 DNA recombination-mediator protein A YPTS_3857 PF01327 Polypeptide deformylase YPTS_3858 PF00551 Formyl transferase YPTS_3858 PF02911 Formyl transferase, C-terminal domain YPTS_3859 PF01029 NusB family YPTS_3859 PF01189 16S rRNA methyltransferase RsmB/F YPTS_3860 PF02080 TrkA-C domain YPTS_3860 PF02254 TrkA-N domain YPTS_3861 PF01741 Large-conductance mechanosensitive channel, MscL YPTS_3862 PF03889 Alternative ribosome-rescue factor A YPTS_3863 PF13411 MerR HTH family regulatory protein YPTS_3864 PF01196 Ribosomal protein L17 YPTS_3865 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPTS_3865 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPTS_3865 PF01000 RNA polymerase Rpb3/RpoA insert domain YPTS_3866 PF00163 Ribosomal protein S4/S9 N-terminal domain YPTS_3866 PF01479 S4 domain YPTS_3867 PF00411 Ribosomal protein S11 YPTS_3868 PF00416 Ribosomal protein S13/S18 YPTS_3869 PF00444 Ribosomal protein L36 YPTS_3870 PF00344 SecY translocase YPTS_3871 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPTS_3872 PF00327 Ribosomal protein L30p/L7e YPTS_3873 PF03719 Ribosomal protein S5, C-terminal domain YPTS_3873 PF00333 Ribosomal protein S5, N-terminal domain YPTS_3874 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPTS_3875 PF00347 Ribosomal protein L6 YPTS_3876 PF00410 Ribosomal protein S8 YPTS_3877 PF00253 Ribosomal protein S14p/S29e YPTS_3878 PF00281 Ribosomal protein L5 YPTS_3878 PF00673 ribosomal L5P family C-terminus YPTS_3879 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPTS_3879 PF00467 KOW motif YPTS_3880 PF00238 Ribosomal protein L14p/L23e YPTS_3881 PF00366 Ribosomal protein S17 YPTS_3882 PF00831 Ribosomal L29 protein YPTS_3883 PF00252 Ribosomal protein L16p/L10e YPTS_3884 PF00189 Ribosomal protein S3, C-terminal domain YPTS_3884 PF07650 KH domain YPTS_3885 PF00237 Ribosomal protein L22p/L17e YPTS_3886 PF00203 Ribosomal protein S19 YPTS_3887 PF03947 Ribosomal Proteins L2, C-terminal domain YPTS_3887 PF00181 Ribosomal Proteins L2, RNA binding domain YPTS_3888 PF00276 Ribosomal protein L23 YPTS_3889 PF00573 Ribosomal protein L4/L1 family YPTS_3890 PF00297 Ribosomal protein L3 YPTS_3891 PF00338 Ribosomal protein S10p/S20e YPTS_3892 PF00210 Ferritin-like domain YPTS_3893 PF04324 BFD-like [2Fe-2S] binding domain YPTS_3894 PF03144 Elongation factor Tu domain 2 YPTS_3894 PF03143 Elongation factor Tu C-terminal domain YPTS_3894 PF00009 Elongation factor Tu GTP binding domain YPTS_3895 PF03144 Elongation factor Tu domain 2 YPTS_3895 PF00679 Elongation factor G C-terminus YPTS_3895 PF03764 Elongation factor G, domain IV YPTS_3895 PF14492 Elongation Factor G, domain II YPTS_3895 PF00009 Elongation factor Tu GTP binding domain YPTS_3896 PF00177 Ribosomal protein S7p/S5e YPTS_3897 PF00164 Ribosomal protein S12/S23 YPTS_3898 PF04077 DsrH like protein YPTS_3899 PF02635 DsrE/DsrF-like family YPTS_3900 PF02635 DsrE/DsrF-like family YPTS_3901 PF13309 HTH domain YPTS_3901 PF08348 YheO-like PAS domain YPTS_3902 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPTS_3902 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTS_3903 PF04102 SlyX YPTS_3904 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTS_3905 PF09526 Probable metal-binding protein (DUF2387) YPTS_3906 PF02254 TrkA-N domain YPTS_3906 PF00999 Sodium/hydrogen exchanger family YPTS_3907 PF02525 Flavodoxin-like fold YPTS_3908 PF12848 ABC transporter YPTS_3908 PF00005 ABC transporter YPTS_3909 PF00535 Glycosyl transferase family 2 YPTS_3911 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPTS_3912 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_3913 PF00005 ABC transporter YPTS_3914 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTS_3915 PF01810 LysE type translocator YPTS_3916 PF00561 alpha/beta hydrolase fold YPTS_3917 PF06794 Uncharacterised protein family (UPF0270) YPTS_3918 PF00485 Phosphoribulokinase / Uridine kinase family YPTS_3920 PF02566 OsmC-like protein YPTS_3921 PF13545 Crp-like helix-turn-helix domain YPTS_3921 PF00027 Cyclic nucleotide-binding domain YPTS_3922 PF12805 FUSC-like inner membrane protein yccS YPTS_3924 PF00202 Aminotransferase class-III YPTS_3925 PF00117 Glutamine amidotransferase class-I YPTS_3926 PF05872 Bacterial protein of unknown function (DUF853) YPTS_3927 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPTS_3929 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPTS_3929 PF02056 Family 4 glycosyl hydrolase YPTS_3930 PF00356 Bacterial regulatory proteins, lacI family YPTS_3932 PF07690 Major Facilitator Superfamily YPTS_3933 PF07969 Amidohydrolase family YPTS_3935 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPTS_3935 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPTS_3935 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPTS_3935 PF04324 BFD-like [2Fe-2S] binding domain YPTS_3935 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_3936 PF13806 Rieske-like [2Fe-2S] domain YPTS_3937 PF01226 Formate/nitrite transporter YPTS_3938 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTS_3938 PF10414 Sirohaem synthase dimerisation region YPTS_3938 PF14824 Sirohaem biosynthesis protein central YPTS_3939 PF00579 tRNA synthetases class I (W and Y) YPTS_3940 PF13419 Haloacid dehalogenase-like hydrolase YPTS_3941 PF00834 Ribulose-phosphate 3 epimerase family YPTS_3942 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPTS_3943 PF05036 Sporulation related domain YPTS_3944 PF01761 3-dehydroquinate synthase YPTS_3945 PF01202 Shikimate kinase YPTS_3946 PF03958 Bacterial type II/III secretion system short domain YPTS_3946 PF00263 Bacterial type II and III secretion system protein YPTS_3951 PF17092 Penicillin-binding protein OB-like domain YPTS_3951 PF00905 Penicillin binding protein transpeptidase domain YPTS_3951 PF00912 Transglycosylase YPTS_3952 PF00293 NUDIX domain YPTS_3954 PF07095 Intracellular growth attenuator protein IgaA YPTS_3955 PF13419 Haloacid dehalogenase-like hydrolase YPTS_3956 PF01479 S4 domain YPTS_3957 PF01430 Hsp33 protein YPTS_3958 PF01293 Phosphoenolpyruvate carboxykinase YPTS_3959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_3959 PF00672 HAMP domain YPTS_3959 PF00512 His Kinase A (phospho-acceptor) domain YPTS_3960 PF00486 Transcriptional regulatory protein, C terminal YPTS_3960 PF00072 Response regulator receiver domain YPTS_3961 PF03449 Transcription elongation factor, N-terminal YPTS_3961 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTS_3962 PF00575 S1 RNA binding domain YPTS_3962 PF17674 HHH domain YPTS_3962 PF09371 Tex-like protein N-terminal domain YPTS_3962 PF16921 Tex protein YqgF-like domain YPTS_3963 PF04023 FeoA domain YPTS_3964 PF07670 Nucleoside recognition YPTS_3964 PF17910 FeoB cytosolic helical domain YPTS_3964 PF07664 Ferrous iron transport protein B C terminus YPTS_3964 PF02421 Ferrous iron transport protein B YPTS_3965 PF09012 FeoC like transcriptional regulator YPTS_3966 PF07338 Protein of unknown function (DUF1471) YPTS_3967 PF00561 alpha/beta hydrolase fold YPTS_3968 PF00156 Phosphoribosyl transferase domain YPTS_3969 PF01521 Iron-sulphur cluster biosynthesis YPTS_3969 PF01106 NifU-like domain YPTS_3970 PF02446 4-alpha-glucanotransferase YPTS_3971 PF00343 Carbohydrate phosphorylase YPTS_3972 PF17874 MalT-like TPR region YPTS_3972 PF00196 Bacterial regulatory proteins, luxR family YPTS_3973 PF00581 Rhodanese-like domain YPTS_3974 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPTS_3974 PF01694 Rhomboid family YPTS_3975 PF00455 DeoR C terminal sensor domain YPTS_3975 PF08220 DeoR-like helix-turn-helix domain YPTS_3979 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPTS_3979 PF01266 FAD dependent oxidoreductase YPTS_3980 PF00343 Carbohydrate phosphorylase YPTS_3981 PF08323 Starch synthase catalytic domain YPTS_3981 PF00534 Glycosyl transferases group 1 YPTS_3982 PF00483 Nucleotidyl transferase YPTS_3983 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPTS_3983 PF00128 Alpha amylase, catalytic domain YPTS_3983 PF18390 Glycogen debranching enzyme C-terminal domain YPTS_3984 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPTS_3984 PF00128 Alpha amylase, catalytic domain YPTS_3984 PF02806 Alpha amylase, C-terminal all-beta domain YPTS_3985 PF06580 Histidine kinase YPTS_3985 PF07694 5TMR of 5TMR-LYT YPTS_3986 PF07979 Intimin C-type lectin domain YPTS_3986 PF11924 Inverse autotransporter, beta-domain YPTS_3986 PF02369 Bacterial Ig-like domain (group 1) YPTS_3986 PF09134 Invasin, domain 3 YPTS_3990 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTS_3990 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTS_3991 PF01914 MarC family integral membrane protein YPTS_3994 PF05638 Type VI secretion system effector, Hcp YPTS_3995 PF01202 Shikimate kinase YPTS_3996 PF02447 GntP family permease YPTS_3997 PF00356 Bacterial regulatory proteins, lacI family YPTS_3997 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTS_3998 PF17954 Quercetinase C-terminal cupin domain YPTS_3998 PF02678 Pirin YPTS_4000 PF00072 Response regulator receiver domain YPTS_4000 PF00486 Transcriptional regulatory protein, C terminal YPTS_4002 PF01116 Fructose-bisphosphate aldolase class-II YPTS_4004 PF13407 Periplasmic binding protein domain YPTS_4005 PF02653 Branched-chain amino acid transport system / permease component YPTS_4006 PF00005 ABC transporter YPTS_4007 PF13188 PAS domain YPTS_4007 PF00072 Response regulator receiver domain YPTS_4007 PF08448 PAS fold YPTS_4007 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_4007 PF00512 His Kinase A (phospho-acceptor) domain YPTS_4009 PF13166 AAA domain YPTS_4021 PF00665 Integrase core domain YPTS_4022 PF08722 TnsA endonuclease N terminal YPTS_4022 PF08721 TnsA endonuclease C terminal YPTS_4024 PF01384 Phosphate transporter family YPTS_4025 PF10625 Universal stress protein B (UspB) YPTS_4026 PF00582 Universal stress protein family YPTS_4027 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPTS_4027 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPTS_4028 PF08548 Peptidase M10 serralysin C terminal YPTS_4028 PF00413 Matrixin YPTS_4028 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPTS_4029 PF04445 Putative SAM-dependent methyltransferase YPTS_4030 PF01432 Peptidase family M3 YPTS_4031 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPTS_4032 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTS_4032 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTS_4033 PF13556 PucR C-terminal helix-turn-helix domain YPTS_4033 PF17853 GGDEF-like domain YPTS_4033 PF05651 Putative sugar diacid recognition YPTS_4034 PF02447 GntP family permease YPTS_4035 PF02595 Glycerate kinase family YPTS_4040 PF03631 Virulence factor BrkB YPTS_4041 PF02611 CDP-diacylglycerol pyrophosphatase YPTS_4042 PF05170 AsmA family YPTS_4043 PF00563 EAL domain YPTS_4044 PF01361 Tautomerase enzyme YPTS_4045 PF00294 pfkB family carbohydrate kinase YPTS_4046 PF00675 Insulinase (Peptidase family M16) YPTS_4046 PF05193 Peptidase M16 inactive domain YPTS_4048 PF00375 Sodium:dicarboxylate symporter family YPTS_4050 PF06917 Periplasmic pectate lyase YPTS_4051 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPTS_4052 PF00672 HAMP domain YPTS_4052 PF00563 EAL domain YPTS_4052 PF00990 Diguanylate cyclase, GGDEF domain YPTS_4052 PF17154 Gammaproteobacterial periplasmic sensor domain YPTS_4053 PF01270 Glycosyl hydrolases family 8 YPTS_4054 PF00005 ABC transporter YPTS_4054 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTS_4055 PF00005 ABC transporter YPTS_4055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTS_4056 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTS_4056 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_4057 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_4058 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTS_4060 PF08479 POTRA domain, ShlB-type YPTS_4060 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTS_4060 PF17287 POTRA domain YPTS_4061 PF05594 Haemagluttinin repeat YPTS_4061 PF13332 Hemagglutinin repeat YPTS_4061 PF05860 haemagglutination activity domain YPTS_4061 PF04829 Pre-toxin domain with VENN motif YPTS_4063 PF07690 Major Facilitator Superfamily YPTS_4064 PF05231 MASE1 YPTS_4064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTS_4064 PF07730 Histidine kinase YPTS_4065 PF00072 Response regulator receiver domain YPTS_4065 PF00196 Bacterial regulatory proteins, luxR family YPTS_4066 PF00884 Sulfatase YPTS_4066 PF08019 Phosphoethanolamine transferase EptA/EptB YPTS_4067 PF12146 Serine aminopeptidase, S33 YPTS_4068 PF00324 Amino acid permease YPTS_4069 PF00221 Aromatic amino acid lyase YPTS_4070 PF17392 Urocanase C-terminal domain YPTS_4070 PF17391 Urocanase N-terminal domain YPTS_4070 PF01175 Urocanase Rossmann-like domain YPTS_4071 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_4072 PF00156 Phosphoribosyl transferase domain YPTS_4075 PF01497 Periplasmic binding protein YPTS_4076 PF01032 FecCD transport family YPTS_4077 PF01032 FecCD transport family YPTS_4078 PF00005 ABC transporter YPTS_4084 PF06755 CbtA_toxin of type IV toxin-antitoxin system YPTS_4085 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YPTS_4086 PF04002 RadC-like JAB domain YPTS_4090 PF01695 IstB-like ATP binding protein YPTS_4092 PF01695 IstB-like ATP binding protein YPTS_4093 PF02796 Helix-turn-helix domain of resolvase YPTS_4093 PF00665 Integrase core domain YPTS_4095 PF14338 Mrr N-terminal domain YPTS_4095 PF04471 Restriction endonuclease YPTS_4097 PF18766 SWI2/SNF2 ATPase YPTS_4097 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPTS_4097 PF11867 Domain of unknown function (DUF3387) YPTS_4099 PF01420 Type I restriction modification DNA specificity domain YPTS_4100 PF12161 HsdM N-terminal domain YPTS_4100 PF02384 N-6 DNA Methylase YPTS_4103 PF14659 Phage integrase, N-terminal SAM-like domain YPTS_4103 PF13356 Arm DNA-binding domain YPTS_4103 PF00589 Phage integrase family YPTS_4104 PF12833 Helix-turn-helix domain YPTS_4105 PF02653 Branched-chain amino acid transport system / permease component YPTS_4106 PF00005 ABC transporter YPTS_4107 PF13407 Periplasmic binding protein domain YPTS_4109 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTS_4109 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTS_4111 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTS_4111 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTS_4112 PF13953 PapC C-terminal domain YPTS_4112 PF13954 PapC N-terminal domain YPTS_4112 PF00577 Outer membrane usher protein YPTS_4113 PF00419 Fimbrial protein YPTS_4114 PF01757 Acyltransferase family YPTS_4116 PF13276 HTH-like domain YPTS_4116 PF00665 Integrase core domain YPTS_4116 PF13333 Integrase core domain YPTS_4117 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPTS_4118 PF13291 ACT domain YPTS_4118 PF00291 Pyridoxal-phosphate dependent enzyme YPTS_4119 PF07676 WD40-like Beta Propeller Repeat YPTS_4119 PF12566 Protein of unknown function (DUF3748) YPTS_4120 PF07119 Protein of unknown function (DUF1375) YPTS_4121 PF00011 Hsp20/alpha crystallin family YPTS_4122 PF00011 Hsp20/alpha crystallin family YPTS_4123 PF02080 TrkA-C domain YPTS_4123 PF06826 Predicted Permease Membrane Region YPTS_4124 PF00155 Aminotransferase class I and II YPTS_4126 PF00128 Alpha amylase, catalytic domain YPTS_4127 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTS_4127 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTS_4129 PF00691 OmpA family YPTS_4129 PF13488 Glycine zipper YPTS_4132 PF03352 Methyladenine glycosylase YPTS_4133 PF02091 Glycyl-tRNA synthetase alpha subunit YPTS_4134 PF02092 Glycyl-tRNA synthetase beta subunit YPTS_4134 PF05746 DALR anticodon binding domain YPTS_4136 PF11254 Protein of unknown function (DUF3053) YPTS_4138 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTS_4138 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTS_4138 PF02378 Phosphotransferase system, EIIC YPTS_4139 PF08125 Mannitol dehydrogenase C-terminal domain YPTS_4139 PF01232 Mannitol dehydrogenase Rossmann domain YPTS_4140 PF05068 Mannitol repressor YPTS_4142 PF10928 Protein of unknown function (DUF2810) YPTS_4146 PF00672 HAMP domain YPTS_4146 PF02203 Tar ligand binding domain homologue YPTS_4146 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTS_4147 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPTS_4147 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPTS_4148 PF02634 FdhD/NarQ family YPTS_4149 PF00384 Molybdopterin oxidoreductase YPTS_4149 PF01568 Molydopterin dinucleotide binding domain YPTS_4149 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTS_4150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTS_4150 PF01568 Molydopterin dinucleotide binding domain YPTS_4150 PF00384 Molybdopterin oxidoreductase YPTS_4151 PF13247 4Fe-4S dicluster domain YPTS_4151 PF09163 Formate dehydrogenase N, transmembrane YPTS_4152 PF01292 Prokaryotic cytochrome b561 YPTS_4153 PF04216 Protein involved in formate dehydrogenase formation YPTS_4154 PF03841 L-seryl-tRNA selenium transferase YPTS_4154 PF12390 Selenocysteine synthase N terminal YPTS_4155 PF09107 Elongation factor SelB, winged helix YPTS_4155 PF09106 Elongation factor SelB, winged helix YPTS_4155 PF03144 Elongation factor Tu domain 2 YPTS_4155 PF00009 Elongation factor Tu GTP binding domain YPTS_4160 PF07729 FCD domain YPTS_4160 PF00392 Bacterial regulatory proteins, gntR family YPTS_4161 PF07690 Major Facilitator Superfamily YPTS_4163 PF00294 pfkB family carbohydrate kinase YPTS_4164 PF05025 RbsD / FucU transport protein family YPTS_4165 PF02705 K+ potassium transporter YPTS_4166 PF17868 AAA lid domain YPTS_4166 PF12592 Protein of unknown function (DUF3763) YPTS_4166 PF07728 AAA domain (dynein-related subfamily) YPTS_4167 PF05762 VWA domain containing CoxE-like protein YPTS_4168 PF03590 Aspartate-ammonia ligase YPTS_4169 PF01037 Lrp/AsnC ligand binding domain YPTS_4170 PF00258 Flavodoxin YPTS_4171 PF13932 GidA associated domain YPTS_4171 PF01134 Glucose inhibited division protein A YPTS_4172 PF02527 rRNA small subunit methyltransferase G YPTS_4173 PF03899 ATP synthase I chain YPTS_4174 PF00119 ATP synthase A chain YPTS_4175 PF00137 ATP synthase subunit C YPTS_4176 PF00430 ATP synthase B/B' CF(0) YPTS_4177 PF00213 ATP synthase delta (OSCP) subunit YPTS_4178 PF00306 ATP synthase alpha/beta chain, C terminal domain YPTS_4178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTS_4178 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPTS_4179 PF00231 ATP synthase YPTS_4180 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPTS_4180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTS_4181 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPTS_4181 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPTS_4182 PF00132 Bacterial transferase hexapeptide (six repeats) YPTS_4182 PF12804 MobA-like NTP transferase domain YPTS_4184 PF01380 SIS domain YPTS_4186 PF12849 PBP superfamily domain YPTS_4187 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_4188 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_4189 PF00005 ABC transporter YPTS_4190 PF01895 PhoU domain YPTS_4192 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTS_4193 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_4194 PF00528 Binding-protein-dependent transport system inner membrane component YPTS_4195 PF13419 Haloacid dehalogenase-like hydrolase YPTS_4196 PF00860 Permease family YPTS_4200 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPTS_4200 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPTS_4200 PF07055 Enoyl reductase FAD binding domain YPTS_4201 PF12631 MnmE helical domain YPTS_4201 PF01926 50S ribosome-binding GTPase YPTS_4201 PF10396 GTP-binding protein TrmE N-terminus YPTS_4202 PF02096 60Kd inner membrane protein YPTS_4202 PF14849 YidC periplasmic domain YPTS_4203 PF01809 Putative membrane protein insertion efficiency factor YPTS_4204 PF00825 Ribonuclease P YPTS_4205 PF00468 Ribosomal protein L34 YPTS_4207 PF05932 Tir chaperone protein (CesT) family YPTS_4209 PF16693 Inner membrane component of T3SS, periplasmic domain YPTS_4209 PF16697 Inner membrane component of T3SS, cytoplasmic domain YPTS_4210 PF08988 Type III secretion system, cytoplasmic E component of needle YPTS_4211 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF YPTS_4212 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) YPTS_4213 PF09025 YopR, type III needle-polymerisation regulator YPTS_4214 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI YPTS_4215 PF01514 Secretory protein of YscJ/FliF family YPTS_4216 PF06578 YOP proteins translocation protein K (YscK) YPTS_4217 PF02108 Flagellar assembly protein FliH YPTS_4218 PF09013 YopH, N-terminal YPTS_4219 PF01527 Transposase YPTS_4221 PF00102 Protein-tyrosine phosphatase YPTS_4221 PF09013 YopH, N-terminal YPTS_4222 PF13276 HTH-like domain YPTS_4222 PF13683 Integrase core domain YPTS_4224 PF09632 Rac1-binding domain YPTS_4224 PF00069 Protein kinase domain YPTS_4230 PF02387 IncFII RepA protein family YPTS_4231 PF10723 Replication regulatory protein RepB YPTS_4234 PF00665 Integrase core domain YPTS_4236 PF07057 DNA helicase TraI YPTS_4236 PF08751 TrwC relaxase YPTS_4236 PF18340 DNA relaxase TraI 2B/2B-like domain YPTS_4236 PF18272 single-stranded DNA binding TraI N-terminal subdomain YPTS_4238 PF03895 YadA-like membrane anchor domain YPTS_4238 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTS_4238 PF05658 Head domain of trimeric autotransporter adhesin YPTS_4240 PF01526 Tn3 transposase DDE domain YPTS_4240 PF13700 Domain of unknown function (DUF4158) YPTS_4241 PF00239 Resolvase, N terminal domain YPTS_4241 PF02796 Helix-turn-helix domain of resolvase YPTS_4244 PF01527 Transposase YPTS_4245 PF13683 Integrase core domain YPTS_4245 PF13276 HTH-like domain YPTS_4247 PF01695 IstB-like ATP binding protein YPTS_4248 PF00665 Integrase core domain YPTS_4250 PF13683 Integrase core domain YPTS_4250 PF13276 HTH-like domain YPTS_4251 PF05932 Tir chaperone protein (CesT) family YPTS_4252 PF09020 YopE, N terminal YPTS_4252 PF03545 Yersinia virulence determinant (YopE) YPTS_4254 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH YPTS_4257 PF02195 ParB-like nuclease domain YPTS_4257 PF18090 Centromere-binding protein HTH domain YPTS_4258 PF13614 AAA domain YPTS_4261 PF13276 HTH-like domain YPTS_4261 PF00665 Integrase core domain YPTS_4261 PF13333 Integrase core domain YPTS_4263 PF05818 Enterobacterial TraT complement resistance protein YPTS_4265 PF03543 Yersinia/Haemophilus virulence surface antigen YPTS_4266 PF05932 Tir chaperone protein (CesT) family YPTS_4270 PF12468 Type III secretion system leucine rich repeat protein YPTS_4270 PF12468 Type III secretion system leucine rich repeat protein YPTS_4272 PF00872 Transposase, Mutator family YPTS_4273 PF05844 YopD protein YPTS_4274 PF04888 Secretion system effector C (SseC) like family YPTS_4275 PF07720 Tetratricopeptide repeat YPTS_4276 PF04792 V antigen (LcrV) protein YPTS_4277 PF07216 LcrG protein YPTS_4278 PF09621 Type III secretion system regulator (LcrR) YPTS_4279 PF00771 FHIPEP family YPTS_4281 PF09474 Type III secretion system YscX (type_III_YscX) YPTS_4283 PF09059 TyeA YPTS_4284 PF07201 HrpJ-like domain YPTS_4285 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPTS_4285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTS_4285 PF18269 T3SS EscN ATPase C-terminal domain YPTS_4286 PF07321 Type III secretion protein YscO YPTS_4287 PF02120 Flagellar hook-length control protein FliK YPTS_4288 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTS_4289 PF00813 FliP family YPTS_4290 PF01313 Bacterial export proteins, family 3 YPTS_4291 PF01311 Bacterial export proteins, family 1 YPTS_4292 PF01312 FlhB HrpN YscU SpaS Family