YPTS_0001 SM00382 ATPases associated with a variety of cellular activities YPTS_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain YPTS_0002 SM00480 DNA polymerase III beta subunit YPTS_0004 SM00387 Histidine kinase-like ATPases YPTS_0004 SM00433 TopoisomeraseII YPTS_0019 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPTS_0019 SM00474 3'-5' exonuclease YPTS_0019 SM00475 5'-3' exonuclease YPTS_0019 SM00482 DNA polymerase A domain YPTS_0022 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_0023 SM00382 ATPases associated with a variety of cellular activities YPTS_0023 SM00448 cheY-homologous receiver domain YPTS_0024 SM00091 PAS domain YPTS_0024 SM00387 Histidine kinase-like ATPases YPTS_0024 SM00388 His Kinase A (phosphoacceptor) domain YPTS_0025 SM01230 YPTS_0025 YPTS_0034 SM00487 DEAD-like helicases superfamily YPTS_0034 SM00490 helicase superfamily c-terminal domain YPTS_0036 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTS_0036 SM00954 Region found in RelA / SpoT proteins YPTS_0037 SM01409 YPTS_0037 YPTS_0038 SM00072 Guanylate kinase homologues. YPTS_0039 SM00532 Ligase N family YPTS_0051 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YPTS_0051 SM01232 YPTS_0051 YPTS_0059 SM00829 Enoylreductase YPTS_0063 SM00450 Rhodanese Homology Domain YPTS_0067 SM00971 Serine acetyltransferase, N-terminal YPTS_0069 SM00342 helix_turn_helix, arabinose operon control protein YPTS_0070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_0070 SM00387 Histidine kinase-like ATPases YPTS_0070 SM00388 His Kinase A (phosphoacceptor) domain YPTS_0071 SM00448 cheY-homologous receiver domain YPTS_0071 SM00862 Transcriptional regulatory protein, C terminal YPTS_0093 SM00382 ATPases associated with a variety of cellular activities YPTS_0099 SM00382 ATPases associated with a variety of cellular activities YPTS_0099 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_0102 SM00354 helix_turn _helix lactose operon repressor YPTS_0104 SM00487 DEAD-like helicases superfamily YPTS_0104 SM00490 helicase superfamily c-terminal domain YPTS_0115 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPTS_0121 SM00382 ATPases associated with a variety of cellular activities YPTS_0137 SM00382 ATPases associated with a variety of cellular activities YPTS_0142 SM00382 ATPases associated with a variety of cellular activities YPTS_0177 SM00487 DEAD-like helicases superfamily YPTS_0177 SM00490 helicase superfamily c-terminal domain YPTS_0179 SM00357 Cold shock protein domain YPTS_0179 SM00382 ATPases associated with a variety of cellular activities YPTS_0179 SM00959 Rho termination factor, N-terminal domain YPTS_0183 SM00984 UDP binding domain YPTS_0201 SM01219 YPTS_0201 YPTS_0217 SM00341 Helicase and RNase D C-terminal YPTS_0217 SM00487 DEAD-like helicases superfamily YPTS_0217 SM00490 helicase superfamily c-terminal domain YPTS_0217 SM00956 YPTS_0217 YPTS_0236 SM00382 ATPases associated with a variety of cellular activities YPTS_0236 SM00962 SRP54-type protein, GTPase domain YPTS_0236 SM00963 SRP54-type protein, helical bundle domain YPTS_0237 SM00382 ATPases associated with a variety of cellular activities YPTS_0244 SM00382 ATPases associated with a variety of cellular activities YPTS_0245 SM00382 ATPases associated with a variety of cellular activities YPTS_0257 SM00382 ATPases associated with a variety of cellular activities YPTS_0261 SM00530 Helix-turn-helix XRE-family like proteins YPTS_0278 SM01004 Delta-aminolevulinic acid dehydratase YPTS_0279 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPTS_0279 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPTS_0298 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YPTS_0298 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPTS_0299 SM00649 Ribosomal protein L11/L12 YPTS_0305 SM00663 RNA polymerase I subunit A N-terminus YPTS_0306 SM00876 Biotin and Thiamin Synthesis associated domain YPTS_0318 SM00411 bacterial (prokaryotic) histone like domain YPTS_0320 SM01209 YPTS_0320 YPTS_0320 SM01210 YPTS_0320 YPTS_0321 SM00798 AICARFT/IMPCHase bienzyme YPTS_0321 SM00851 MGS-like domain YPTS_0327 SM00382 ATPases associated with a variety of cellular activities YPTS_0334 SM00421 helix_turn_helix, Lux Regulon YPTS_0334 SM00448 cheY-homologous receiver domain YPTS_0335 SM00387 Histidine kinase-like ATPases YPTS_0335 SM00388 His Kinase A (phosphoacceptor) domain YPTS_0335 SM00448 cheY-homologous receiver domain YPTS_0339 SM00342 helix_turn_helix, arabinose operon control protein YPTS_0347 SM00382 ATPases associated with a variety of cellular activities YPTS_0360 SM00382 ATPases associated with a variety of cellular activities YPTS_0368 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_0387 SM00060 Fibronectin type 3 domain YPTS_0388 SM00869 Autotransporter beta-domain YPTS_0391 SM00563 Phosphate acyltransferases YPTS_0397 SM00829 Enoylreductase YPTS_0398 SM00382 ATPases associated with a variety of cellular activities YPTS_0399 SM01005 Alanine racemase, C-terminal domain YPTS_0406 SM01007 Class II Aldolase and Adducin N-terminal domain YPTS_0411 SM00342 helix_turn_helix, arabinose operon control protein YPTS_0412 SM00342 helix_turn_helix, arabinose operon control protein YPTS_0419 SM01276 YPTS_0419 YPTS_0424 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTS_0430 SM00883 Chaperonin 10 Kd subunit YPTS_0434 SM00841 Elongation factor P, C-terminal YPTS_0434 SM01185 YPTS_0434 YPTS_0444 SM00479 YPTS_0444 YPTS_0450 SM00257 Lysin motif YPTS_0450 SM00646 YPTS_0450 YPTS_0451 SM00853 MutL C terminal dimerisation domain YPTS_0451 SM01340 YPTS_0451 YPTS_0456 SM00244 prohibitin homologues YPTS_0457 SM00244 prohibitin homologues YPTS_0459 SM00788 Adenylosuccinate synthetase YPTS_0461 SM00316 Ribosomal protein S1-like RNA-binding domain YPTS_0461 SM00357 Cold shock protein domain YPTS_0461 SM00955 YPTS_0461 YPTS_0462 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPTS_0480 SM00116 Domain in cystathionine beta-synthase and other proteins. YPTS_0480 SM01091 Transporter associated domain YPTS_0498 SM00387 Histidine kinase-like ATPases YPTS_0498 SM00388 His Kinase A (phosphoacceptor) domain YPTS_0499 SM00448 cheY-homologous receiver domain YPTS_0499 SM00862 Transcriptional regulatory protein, C terminal YPTS_0502 SM01103 YPTS_0502 YPTS_0504 SM00382 ATPases associated with a variety of cellular activities YPTS_0509 SM00316 Ribosomal protein S1-like RNA-binding domain YPTS_0509 SM00322 K homology RNA-binding domain YPTS_0513 SM01387 YPTS_0513 YPTS_0514 SM00316 Ribosomal protein S1-like RNA-binding domain YPTS_0514 SM00322 K homology RNA-binding domain YPTS_0515 SM00028 Tetratricopeptide repeats YPTS_0516 SM00487 DEAD-like helicases superfamily YPTS_0516 SM00490 helicase superfamily c-terminal domain YPTS_0518 SM00530 Helix-turn-helix XRE-family like proteins YPTS_0534 SM00382 ATPases associated with a variety of cellular activities YPTS_0537 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPTS_0538 SM00849 Metallo-beta-lactamase superfamily YPTS_0539 SM00072 Guanylate kinase homologues. YPTS_0541 SM00382 ATPases associated with a variety of cellular activities YPTS_0542 SM00382 ATPases associated with a variety of cellular activities YPTS_0547 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_0547 SM00866 YPTS_0547 YPTS_0551 SM00382 ATPases associated with a variety of cellular activities YPTS_0552 SM00382 ATPases associated with a variety of cellular activities YPTS_0568 SM00487 DEAD-like helicases superfamily YPTS_0572 SM01133 YPTS_0572 YPTS_0576 SM00382 ATPases associated with a variety of cellular activities YPTS_0585 SM00450 Rhodanese Homology Domain YPTS_0592 SM00267 diguanylate cyclase YPTS_0598 SM00749 bacterial OsmY and nodulation domain YPTS_0603 SM01133 YPTS_0603 YPTS_0604 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YPTS_0609 SM00382 ATPases associated with a variety of cellular activities YPTS_0610 SM00530 Helix-turn-helix XRE-family like proteins YPTS_0612 SM00382 ATPases associated with a variety of cellular activities YPTS_0614 SM00267 diguanylate cyclase YPTS_0616 SM00831 Cation transporter/ATPase, N-terminus YPTS_0620 SM00855 Phosphoglycerate mutase family YPTS_0621 SM00342 helix_turn_helix, arabinose operon control protein YPTS_0621 SM00871 Bacterial transcription activator, effector binding domain YPTS_0624 SM00448 cheY-homologous receiver domain YPTS_0624 SM00862 Transcriptional regulatory protein, C terminal YPTS_0631 SM00852 Probable molybdopterin binding domain YPTS_0636 SM00271 DnaJ molecular chaperone homology domain YPTS_0640 SM00904 Riboflavin kinase YPTS_0647 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YPTS_0648 SM00851 MGS-like domain YPTS_0648 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPTS_0656 SM00650 Ribosomal RNA adenine dimethylases YPTS_0660 SM00271 DnaJ molecular chaperone homology domain YPTS_0670 SM00382 ATPases associated with a variety of cellular activities YPTS_0670 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_0682 SM00487 DEAD-like helicases superfamily YPTS_0682 SM00490 helicase superfamily c-terminal domain YPTS_0683 SM00486 DNA polymerase type-B family YPTS_0685 SM00382 ATPases associated with a variety of cellular activities YPTS_0697 SM01329 YPTS_0697 YPTS_0698 SM00917 LeuA allosteric (dimerisation) domain YPTS_0704 SM00354 helix_turn _helix lactose operon repressor YPTS_0719 SM00842 Cell division protein FtsA YPTS_0720 SM00864 Tubulin/FtsZ family, GTPase domain YPTS_0720 SM00865 Tubulin/FtsZ family, C-terminal domain YPTS_0724 SM00957 SecA DEAD-like domain YPTS_0724 SM00958 SecA preprotein cross-linking domain YPTS_0727 SM01321 YPTS_0727 YPTS_0732 SM01240 YPTS_0732 YPTS_0738 SM00644 YPTS_0738 YPTS_0742 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_0742 SM00895 YPTS_0742 YPTS_0755 SM00947 Carbonic anhydrase YPTS_0756 SM00382 ATPases associated with a variety of cellular activities YPTS_0769 SM00487 DEAD-like helicases superfamily YPTS_0769 SM00490 helicase superfamily c-terminal domain YPTS_0769 SM00847 Helicase associated domain (HA2) Add an annotation YPTS_0771 SM00382 ATPases associated with a variety of cellular activities YPTS_0781 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTS_0782 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTS_0783 SM00073 Histidine Phosphotransfer domain YPTS_0783 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_0783 SM00387 Histidine kinase-like ATPases YPTS_0783 SM00388 His Kinase A (phosphoacceptor) domain YPTS_0783 SM00448 cheY-homologous receiver domain YPTS_0785 SM00954 Region found in RelA / SpoT proteins YPTS_0788 SM01192 YPTS_0788 YPTS_0788 SM01193 YPTS_0788 YPTS_0809 SM00257 Lysin motif YPTS_0811 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YPTS_0811 SM00534 ATPase domain of DNA mismatch repair MUTS family YPTS_0814 SM00829 Enoylreductase YPTS_0817 SM01120 YPTS_0817 YPTS_0820 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YPTS_0823 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_0824 SM01235 YPTS_0824 YPTS_0836 SM00382 ATPases associated with a variety of cellular activities YPTS_0838 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTS_0838 SM01134 YPTS_0838 YPTS_0839 SM01007 Class II Aldolase and Adducin N-terminal domain YPTS_0840 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTS_0849 SM00382 ATPases associated with a variety of cellular activities YPTS_0852 SM00861 Transketolase, pyrimidine binding domain YPTS_0859 SM00382 ATPases associated with a variety of cellular activities YPTS_0861 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPTS_0867 SM01091 Transporter associated domain YPTS_0869 SM00382 ATPases associated with a variety of cellular activities YPTS_0869 SM00962 SRP54-type protein, GTPase domain YPTS_0869 SM00963 SRP54-type protein, helical bundle domain YPTS_0876 SM00448 cheY-homologous receiver domain YPTS_0876 SM00850 LytTr DNA-binding domain YPTS_0878 SM00830 Chorismate mutase type II YPTS_0879 SM00382 ATPases associated with a variety of cellular activities YPTS_0881 SM00830 Chorismate mutase type II YPTS_0885 SM00363 S4 RNA-binding domain YPTS_0887 SM00382 ATPases associated with a variety of cellular activities YPTS_0887 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_0892 SM00155 Phospholipase D. Active site motifs. YPTS_0893 SM00881 CoA binding domain YPTS_0894 SM01144 YPTS_0894 YPTS_0896 SM00967 RNA 2'-O ribose methyltransferase substrate binding YPTS_0899 SM00347 helix_turn_helix multiple antibiotic resistance protein YPTS_0907 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_0910 SM00382 ATPases associated with a variety of cellular activities YPTS_0915 SM01007 Class II Aldolase and Adducin N-terminal domain YPTS_0922 SM00710 Parallel beta-helix repeats YPTS_0922 SM00912 haemagglutination activity domain YPTS_0931 SM00900 YPTS_0931 YPTS_0941 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YPTS_0946 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPTS_0958 SM00448 cheY-homologous receiver domain YPTS_0958 SM00862 Transcriptional regulatory protein, C terminal YPTS_0959 SM00091 PAS domain YPTS_0959 SM00387 Histidine kinase-like ATPases YPTS_0959 SM00388 His Kinase A (phosphoacceptor) domain YPTS_0963 SM00642 Alpha-amylase domain YPTS_0970 SM01323 YPTS_0970 YPTS_0980 SM00861 Transketolase, pyrimidine binding domain YPTS_0984 SM00981 YPTS_0984 YPTS_1001 SM00382 ATPases associated with a variety of cellular activities YPTS_1001 SM00994 ClpX C4-type zinc finger YPTS_1001 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_1002 SM00382 ATPases associated with a variety of cellular activities YPTS_1002 SM00464 Found in ATP-dependent protease La (LON) YPTS_1003 SM00411 bacterial (prokaryotic) histone like domain YPTS_1011 SM00344 helix_turn_helix ASNC type YPTS_1012 SM00382 ATPases associated with a variety of cellular activities YPTS_1013 SM00382 ATPases associated with a variety of cellular activities YPTS_1014 SM00938 Nitrogen regulatory protein P-II YPTS_1035 SM00382 ATPases associated with a variety of cellular activities YPTS_1037 SM00493 YPTS_1037 YPTS_1038 SM00387 Histidine kinase-like ATPases YPTS_1071 SM00422 helix_turn_helix, mercury resistance YPTS_1073 SM00244 prohibitin homologues YPTS_1075 SM00822 YPTS_1075 YPTS_1077 SM00382 ATPases associated with a variety of cellular activities YPTS_1080 SM01001 AIR carboxylase YPTS_1083 SM00840 YPTS_1083 YPTS_1094 SM00563 Phosphate acyltransferases YPTS_1096 SM00195 Dual specificity phosphatase, catalytic domain YPTS_1096 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPTS_1105 SM01217 YPTS_1105 YPTS_1109 SM00363 S4 RNA-binding domain YPTS_1110 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPTS_1113 SM00869 Autotransporter beta-domain YPTS_1123 SM01359 YPTS_1123 YPTS_1123 SM01360 YPTS_1123 YPTS_1131 SM00382 ATPases associated with a variety of cellular activities YPTS_1138 SM00382 ATPases associated with a variety of cellular activities YPTS_1142 SM00421 helix_turn_helix, Lux Regulon YPTS_1144 SM00357 Cold shock protein domain YPTS_1148 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_1151 SM00936 Penicillin-binding protein 5, C-terminal domain YPTS_1162 SM00382 ATPases associated with a variety of cellular activities YPTS_1165 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_1167 SM00116 Domain in cystathionine beta-synthase and other proteins. YPTS_1167 SM01091 Transporter associated domain YPTS_1170 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_1181 SM01081 Putative carbohydrate binding domain YPTS_1195 SM00382 ATPases associated with a variety of cellular activities YPTS_1224 SM00861 Transketolase, pyrimidine binding domain YPTS_1227 SM00881 CoA binding domain YPTS_1244 SM00855 Phosphoglycerate mutase family YPTS_1252 SM00382 ATPases associated with a variety of cellular activities YPTS_1257 SM00382 ATPases associated with a variety of cellular activities YPTS_1261 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_1261 SM00876 Biotin and Thiamin Synthesis associated domain YPTS_1265 SM00382 ATPases associated with a variety of cellular activities YPTS_1266 SM00487 DEAD-like helicases superfamily YPTS_1266 SM00490 helicase superfamily c-terminal domain YPTS_1270 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_1284 SM00091 PAS domain YPTS_1284 SM00387 Histidine kinase-like ATPases YPTS_1284 SM00388 His Kinase A (phosphoacceptor) domain YPTS_1285 SM00382 ATPases associated with a variety of cellular activities YPTS_1285 SM00448 cheY-homologous receiver domain YPTS_1291 SM00382 ATPases associated with a variety of cellular activities YPTS_1294 SM00487 DEAD-like helicases superfamily YPTS_1294 SM00490 helicase superfamily c-terminal domain YPTS_1307 SM01118 YPTS_1307 YPTS_1308 SM00507 HNH nucleases YPTS_1311 SM00382 ATPases associated with a variety of cellular activities YPTS_1320 SM00382 ATPases associated with a variety of cellular activities YPTS_1323 SM00450 Rhodanese Homology Domain YPTS_1326 SM00382 ATPases associated with a variety of cellular activities YPTS_1333 SM00487 DEAD-like helicases superfamily YPTS_1333 SM00488 YPTS_1333 YPTS_1333 SM00491 YPTS_1333 YPTS_1334 SM01060 YPTS_1334 YPTS_1337 SM00852 Probable molybdopterin binding domain YPTS_1343 SM00434 DNA Topoisomerase IV YPTS_1345 SM00387 Histidine kinase-like ATPases YPTS_1345 SM00388 His Kinase A (phosphoacceptor) domain YPTS_1345 SM00448 cheY-homologous receiver domain YPTS_1346 SM00421 helix_turn_helix, Lux Regulon YPTS_1346 SM00448 cheY-homologous receiver domain YPTS_1347 SM00387 Histidine kinase-like ATPases YPTS_1354 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTS_1354 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_1357 SM00530 Helix-turn-helix XRE-family like proteins YPTS_1361 SM01007 Class II Aldolase and Adducin N-terminal domain YPTS_1362 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTS_1362 SM01134 YPTS_1362 YPTS_1392 SM00487 DEAD-like helicases superfamily YPTS_1392 SM00490 helicase superfamily c-terminal domain YPTS_1393 SM00363 S4 RNA-binding domain YPTS_1396 SM00382 ATPases associated with a variety of cellular activities YPTS_1400 SM00052 Putative diguanylate phosphodiesterase YPTS_1402 SM00014 Acid phosphatase homologues YPTS_1403 SM00833 Cobalamin synthesis protein cobW C-terminal domain YPTS_1405 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_1405 SM00895 YPTS_1405 YPTS_1408 SM00841 Elongation factor P, C-terminal YPTS_1408 SM01185 YPTS_1408 YPTS_1421 SM00382 ATPases associated with a variety of cellular activities YPTS_1427 SM00862 Transcriptional regulatory protein, C terminal YPTS_1432 SM00518 AP endonuclease family 2 YPTS_1439 SM00382 ATPases associated with a variety of cellular activities YPTS_1446 SM00382 ATPases associated with a variety of cellular activities YPTS_1446 SM00930 YPTS_1446 YPTS_1448 SM00936 Penicillin-binding protein 5, C-terminal domain YPTS_1450 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTS_1450 SM01134 YPTS_1450 YPTS_1451 SM01133 YPTS_1451 YPTS_1452 SM00014 Acid phosphatase homologues YPTS_1459 SM00382 ATPases associated with a variety of cellular activities YPTS_1464 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_1464 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPTS_1467 SM00244 prohibitin homologues YPTS_1470 SM00382 ATPases associated with a variety of cellular activities YPTS_1476 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_1476 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPTS_1477 SM00382 ATPases associated with a variety of cellular activities YPTS_1478 SM00830 Chorismate mutase type II YPTS_1491 SM00382 ATPases associated with a variety of cellular activities YPTS_1492 SM00357 Cold shock protein domain YPTS_1494 SM00382 ATPases associated with a variety of cellular activities YPTS_1494 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_1495 SM00316 Ribosomal protein S1-like RNA-binding domain YPTS_1497 SM00382 ATPases associated with a variety of cellular activities YPTS_1498 SM00382 ATPases associated with a variety of cellular activities YPTS_1500 SM00344 helix_turn_helix ASNC type YPTS_1501 SM00843 YPTS_1501 YPTS_1503 SM00382 ATPases associated with a variety of cellular activities YPTS_1512 SM00870 YPTS_1512 YPTS_1518 SM00316 Ribosomal protein S1-like RNA-binding domain YPTS_1519 SM00411 bacterial (prokaryotic) histone like domain YPTS_1521 SM00849 Metallo-beta-lactamase superfamily YPTS_1522 SM00382 ATPases associated with a variety of cellular activities YPTS_1524 SM01150 YPTS_1524 YPTS_1525 SM00357 Cold shock protein domain YPTS_1535 SM00849 Metallo-beta-lactamase superfamily YPTS_1546 SM00981 YPTS_1546 YPTS_1547 SM00382 ATPases associated with a variety of cellular activities YPTS_1553 SM01321 YPTS_1553 YPTS_1554 SM00825 Beta-ketoacyl synthase YPTS_1565 SM00851 MGS-like domain YPTS_1567 SM00881 CoA binding domain YPTS_1568 SM00992 Hemimethylated DNA-binding protein YccV like YPTS_1569 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YPTS_1580 SM00825 Beta-ketoacyl synthase YPTS_1588 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPTS_1596 SM00382 ATPases associated with a variety of cellular activities YPTS_1596 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_1602 SM00257 Lysin motif YPTS_1616 SM00382 ATPases associated with a variety of cellular activities YPTS_1619 SM00852 Probable molybdopterin binding domain YPTS_1622 SM00382 ATPases associated with a variety of cellular activities YPTS_1627 SM00829 Enoylreductase YPTS_1633 SM00382 ATPases associated with a variety of cellular activities YPTS_1636 SM00919 Malic enzyme, NAD binding domain YPTS_1636 SM01274 YPTS_1636 YPTS_1649 SM01091 Transporter associated domain YPTS_1653 SM01006 Siderophore biosynthesis protein domain YPTS_1655 SM00382 ATPases associated with a variety of cellular activities YPTS_1663 SM01350 YPTS_1663 YPTS_1677 SM00382 ATPases associated with a variety of cellular activities YPTS_1684 SM00634 Bacterial Ig-like domain (group 1) YPTS_1690 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPTS_1701 SM00382 ATPases associated with a variety of cellular activities YPTS_1712 SM00822 YPTS_1712 YPTS_1712 SM00823 Phosphopantetheine attachment site YPTS_1712 SM00824 Thioesterase YPTS_1712 SM00825 Beta-ketoacyl synthase YPTS_1712 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPTS_1713 SM00823 Phosphopantetheine attachment site YPTS_1714 SM00342 helix_turn_helix, arabinose operon control protein YPTS_1715 SM00382 ATPases associated with a variety of cellular activities YPTS_1716 SM00382 ATPases associated with a variety of cellular activities YPTS_1721 SM00421 helix_turn_helix, Lux Regulon YPTS_1721 SM00448 cheY-homologous receiver domain YPTS_1729 SM00354 helix_turn _helix lactose operon repressor YPTS_1732 SM00090 RIO-like kinase YPTS_1733 SM00382 ATPases associated with a variety of cellular activities YPTS_1736 SM00342 helix_turn_helix, arabinose operon control protein YPTS_1747 SM00357 Cold shock protein domain YPTS_1751 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPTS_1751 SM00091 PAS domain YPTS_1751 SM00267 diguanylate cyclase YPTS_1759 SM01091 Transporter associated domain YPTS_1760 SM00347 helix_turn_helix multiple antibiotic resistance protein YPTS_1770 SM00903 Flavin reductase like domain YPTS_1776 SM00487 DEAD-like helicases superfamily YPTS_1776 SM00490 helicase superfamily c-terminal domain YPTS_1778 SM01022 YPTS_1778 YPTS_1795 SM00634 Bacterial Ig-like domain (group 1) YPTS_1798 SM00858 YPTS_1798 YPTS_1807 SM00047 Lysozyme subfamily 2 YPTS_1811 SM01007 Class II Aldolase and Adducin N-terminal domain YPTS_1815 SM00382 ATPases associated with a variety of cellular activities YPTS_1829 SM00382 ATPases associated with a variety of cellular activities YPTS_1836 SM00478 endonuclease III YPTS_1837 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTS_1838 SM00342 helix_turn_helix, arabinose operon control protein YPTS_1847 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_1847 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPTS_1849 SM00382 ATPases associated with a variety of cellular activities YPTS_1867 SM00421 helix_turn_helix, Lux Regulon YPTS_1867 SM00448 cheY-homologous receiver domain YPTS_1868 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPTS_1868 SM00465 GIY-YIG type nucleases (URI domain) YPTS_1905 SM00479 YPTS_1905 YPTS_1914 SM00530 Helix-turn-helix XRE-family like proteins YPTS_1915 SM00974 YPTS_1915 YPTS_1958 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_1958 SM00866 YPTS_1958 YPTS_1965 SM00382 ATPases associated with a variety of cellular activities YPTS_1971 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_1971 SM00387 Histidine kinase-like ATPases YPTS_1971 SM00388 His Kinase A (phosphoacceptor) domain YPTS_1971 SM00448 cheY-homologous receiver domain YPTS_1972 SM00421 helix_turn_helix, Lux Regulon YPTS_1972 SM00448 cheY-homologous receiver domain YPTS_1985 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTS_1985 SM01134 YPTS_1985 YPTS_1994 SM00382 ATPases associated with a variety of cellular activities YPTS_2007 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_2007 SM00387 Histidine kinase-like ATPases YPTS_2017 SM00382 ATPases associated with a variety of cellular activities YPTS_2022 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_2022 SM00866 YPTS_2022 YPTS_2036 SM00671 Sel1-like repeats. YPTS_2038 SM00671 Sel1-like repeats. YPTS_2049 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_2049 SM00387 Histidine kinase-like ATPases YPTS_2049 SM00388 His Kinase A (phosphoacceptor) domain YPTS_2050 SM00448 cheY-homologous receiver domain YPTS_2050 SM00862 Transcriptional regulatory protein, C terminal YPTS_2058 SM01400 YPTS_2058 YPTS_2063 SM00937 YPTS_2063 YPTS_2074 SM00382 ATPases associated with a variety of cellular activities YPTS_2077 SM00481 DNA polymerase alpha chain like domain YPTS_2088 SM00836 DALR anticodon binding domain YPTS_2088 SM01016 Arginyl tRNA synthetase N terminal dom YPTS_2099 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPTS_2100 SM00382 ATPases associated with a variety of cellular activities YPTS_2102 SM00382 ATPases associated with a variety of cellular activities YPTS_2104 SM00257 Lysin motif YPTS_2115 SM00487 DEAD-like helicases superfamily YPTS_2115 SM00491 YPTS_2115 YPTS_2119 SM00341 Helicase and RNase D C-terminal YPTS_2119 SM00474 3'-5' exonuclease YPTS_2134 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_2143 SM00763 PrkA AAA domain YPTS_2146 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTS_2150 SM00870 YPTS_2150 YPTS_2155 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPTS_2155 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPTS_2155 SM00493 YPTS_2155 YPTS_2165 SM00448 cheY-homologous receiver domain YPTS_2166 SM00984 UDP binding domain YPTS_2169 SM00528 Domain in histone-like proteins of HNS family YPTS_2176 SM00382 ATPases associated with a variety of cellular activities YPTS_2177 SM00382 ATPases associated with a variety of cellular activities YPTS_2180 SM00155 Phospholipase D. Active site motifs. YPTS_2195 SM00749 bacterial OsmY and nodulation domain YPTS_2202 SM00481 DNA polymerase alpha chain like domain YPTS_2204 SM00363 S4 RNA-binding domain YPTS_2206 SM00822 YPTS_2206 YPTS_2210 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YPTS_2210 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YPTS_2210 SM00493 YPTS_2210 YPTS_2215 SM00014 Acid phosphatase homologues YPTS_2217 SM00028 Tetratricopeptide repeats YPTS_2219 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YPTS_2222 SM01007 Class II Aldolase and Adducin N-terminal domain YPTS_2227 SM00357 Cold shock protein domain YPTS_2227 SM00955 YPTS_2227 YPTS_2230 SM00478 endonuclease III YPTS_2230 SM00525 YPTS_2230 YPTS_2232 SM00900 YPTS_2232 YPTS_2234 SM00342 helix_turn_helix, arabinose operon control protein YPTS_2239 SM00382 ATPases associated with a variety of cellular activities YPTS_2241 SM00382 ATPases associated with a variety of cellular activities YPTS_2245 SM00382 ATPases associated with a variety of cellular activities YPTS_2247 SM00342 helix_turn_helix, arabinose operon control protein YPTS_2254 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_2254 SM00866 YPTS_2254 YPTS_2267 SM00382 ATPases associated with a variety of cellular activities YPTS_2270 SM00382 ATPases associated with a variety of cellular activities YPTS_2279 SM00354 helix_turn _helix lactose operon repressor YPTS_2283 SM00382 ATPases associated with a variety of cellular activities YPTS_2288 SM00382 ATPases associated with a variety of cellular activities YPTS_2298 SM00098 Alkaline phosphatase homologues YPTS_2300 SM00100 Cyclic nucleotide-monophosphate binding domain YPTS_2300 SM00419 helix_turn_helix, cAMP Regulatory protein YPTS_2303 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YPTS_2303 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YPTS_2307 SM00448 cheY-homologous receiver domain YPTS_2307 SM00862 Transcriptional regulatory protein, C terminal YPTS_2308 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_2308 SM00387 Histidine kinase-like ATPases YPTS_2308 SM00388 His Kinase A (phosphoacceptor) domain YPTS_2311 SM00867 YceI-like domain YPTS_2314 SM00020 Trypsin-like serine protease YPTS_2315 SM00530 Helix-turn-helix XRE-family like proteins YPTS_2317 SM00382 ATPases associated with a variety of cellular activities YPTS_2317 SM00487 DEAD-like helicases superfamily YPTS_2317 SM00490 helicase superfamily c-terminal domain YPTS_2317 SM00847 Helicase associated domain (HA2) Add an annotation YPTS_2329 SM00890 Domain of unknown function YPTS_2333 SM00422 helix_turn_helix, mercury resistance YPTS_2337 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPTS_2339 SM00091 PAS domain YPTS_2339 SM00382 ATPases associated with a variety of cellular activities YPTS_2341 SM00953 YPTS_2341 YPTS_2348 SM00382 ATPases associated with a variety of cellular activities YPTS_2352 SM00382 ATPases associated with a variety of cellular activities YPTS_2353 SM00382 ATPases associated with a variety of cellular activities YPTS_2360 SM00363 S4 RNA-binding domain YPTS_2369 SM00479 YPTS_2369 YPTS_2374 SM00354 helix_turn _helix lactose operon repressor YPTS_2386 SM00382 ATPases associated with a variety of cellular activities YPTS_2406 SM00382 ATPases associated with a variety of cellular activities YPTS_2410 SM00411 bacterial (prokaryotic) histone like domain YPTS_2411 SM00873 B3/4 domain YPTS_2411 SM00874 tRNA synthetase B5 domain YPTS_2411 SM00896 Ferredoxin-fold anticodon binding domain YPTS_2416 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YPTS_2422 SM00382 ATPases associated with a variety of cellular activities YPTS_2435 SM00382 ATPases associated with a variety of cellular activities YPTS_2440 SM00644 YPTS_2440 YPTS_2441 SM00346 helix_turn_helix isocitrate lyase regulation YPTS_2451 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTS_2451 SM00245 tail specific protease YPTS_2452 SM00945 ProQ/FINO family YPTS_2456 SM00972 Spore Coat Protein U domain YPTS_2457 SM00972 Spore Coat Protein U domain YPTS_2458 SM00972 Spore Coat Protein U domain YPTS_2461 SM00972 Spore Coat Protein U domain YPTS_2463 SM01022 YPTS_2463 YPTS_2470 SM01005 Alanine racemase, C-terminal domain YPTS_2474 SM00644 YPTS_2474 YPTS_2476 SM00448 cheY-homologous receiver domain YPTS_2477 SM00448 cheY-homologous receiver domain YPTS_2478 SM00138 Methyltransferase, chemotaxis proteins YPTS_2479 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTS_2479 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_2479 SM00319 Homologues of the ligand binding domain of Tar YPTS_2480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTS_2480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_2480 SM00319 Homologues of the ligand binding domain of Tar YPTS_2483 SM00260 Two component signalling adaptor domain YPTS_2484 SM00073 Histidine Phosphotransfer domain YPTS_2484 SM00260 Two component signalling adaptor domain YPTS_2484 SM00387 Histidine kinase-like ATPases YPTS_2484 SM01231 YPTS_2484 YPTS_2489 SM00831 Cation transporter/ATPase, N-terminus YPTS_2491 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTS_2491 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_2491 SM00319 Homologues of the ligand binding domain of Tar YPTS_2493 SM00357 Cold shock protein domain YPTS_2494 SM01038 Beta galactosidase small chain YPTS_2496 SM00829 Enoylreductase YPTS_2500 SM00344 helix_turn_helix ASNC type YPTS_2507 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPTS_2507 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTS_2509 SM00354 helix_turn _helix lactose operon repressor YPTS_2510 SM01329 YPTS_2510 YPTS_2518 SM00448 cheY-homologous receiver domain YPTS_2518 SM00862 Transcriptional regulatory protein, C terminal YPTS_2519 SM00387 Histidine kinase-like ATPases YPTS_2519 SM00388 His Kinase A (phosphoacceptor) domain YPTS_2520 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YPTS_2525 SM00382 ATPases associated with a variety of cellular activities YPTS_2527 SM00487 DEAD-like helicases superfamily YPTS_2527 SM00490 helicase superfamily c-terminal domain YPTS_2527 SM00982 YPTS_2527 YPTS_2527 SM01058 CarD-like/TRCF domain YPTS_2557 SM00825 Beta-ketoacyl synthase YPTS_2559 SM00822 YPTS_2559 YPTS_2560 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YPTS_2566 SM00363 S4 RNA-binding domain YPTS_2568 SM00316 Ribosomal protein S1-like RNA-binding domain YPTS_2579 SM00450 Rhodanese Homology Domain YPTS_2590 SM01091 Transporter associated domain YPTS_2593 SM00421 helix_turn_helix, Lux Regulon YPTS_2613 SM00354 helix_turn _helix lactose operon repressor YPTS_2615 SM00382 ATPases associated with a variety of cellular activities YPTS_2621 SM00912 haemagglutination activity domain YPTS_2627 SM01329 YPTS_2627 YPTS_2629 SM00354 helix_turn _helix lactose operon repressor YPTS_2631 SM00382 ATPases associated with a variety of cellular activities YPTS_2633 SM00829 Enoylreductase YPTS_2643 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_2643 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YPTS_2645 SM00382 ATPases associated with a variety of cellular activities YPTS_2646 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YPTS_2646 SM00091 PAS domain YPTS_2646 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTS_2651 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YPTS_2664 SM00354 helix_turn _helix lactose operon repressor YPTS_2677 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTS_2677 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPTS_2678 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPTS_2685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTS_2693 SM00354 helix_turn _helix lactose operon repressor YPTS_2699 SM00052 Putative diguanylate phosphodiesterase YPTS_2701 SM00382 ATPases associated with a variety of cellular activities YPTS_2704 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_2714 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPTS_2716 SM00342 helix_turn_helix, arabinose operon control protein YPTS_2721 SM00825 Beta-ketoacyl synthase YPTS_2729 SM00463 Small MutS-related domain YPTS_2746 SM00382 ATPases associated with a variety of cellular activities YPTS_2768 SM00382 ATPases associated with a variety of cellular activities YPTS_2768 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_2778 SM00421 helix_turn_helix, Lux Regulon YPTS_2782 SM00382 ATPases associated with a variety of cellular activities YPTS_2787 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTS_2811 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YPTS_2811 SM00292 breast cancer carboxy-terminal domain YPTS_2811 SM00532 Ligase N family YPTS_2812 SM00771 ZipA, C-terminal domain (FtsZ-binding) YPTS_2818 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_2818 SM00387 Histidine kinase-like ATPases YPTS_2818 SM00388 His Kinase A (phosphoacceptor) domain YPTS_2819 SM00448 cheY-homologous receiver domain YPTS_2819 SM00862 Transcriptional regulatory protein, C terminal YPTS_2821 SM00382 ATPases associated with a variety of cellular activities YPTS_2822 SM00450 Rhodanese Homology Domain YPTS_2827 SM00327 von Willebrand factor (vWF) type A domain YPTS_2828 SM00387 Histidine kinase-like ATPases YPTS_2828 SM00388 His Kinase A (phosphoacceptor) domain YPTS_2829 SM00448 cheY-homologous receiver domain YPTS_2829 SM00862 Transcriptional regulatory protein, C terminal YPTS_2832 SM00382 ATPases associated with a variety of cellular activities YPTS_2840 SM00364 Leucine-rich repeats, bacterial type YPTS_2840 SM00369 Leucine-rich repeats, typical (most populated) subfamily YPTS_2843 SM01130 YPTS_2843 YPTS_2847 SM00869 Autotransporter beta-domain YPTS_2859 SM00919 Malic enzyme, NAD binding domain YPTS_2859 SM01274 YPTS_2859 YPTS_2864 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTS_2867 SM00421 helix_turn_helix, Lux Regulon YPTS_2867 SM00448 cheY-homologous receiver domain YPTS_2874 SM00382 ATPases associated with a variety of cellular activities YPTS_2889 SM01130 YPTS_2889 YPTS_2904 SM00382 ATPases associated with a variety of cellular activities YPTS_2910 SM00924 MgtE intracellular N domain YPTS_2917 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_2918 SM00382 ATPases associated with a variety of cellular activities YPTS_2923 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_2923 SM00387 Histidine kinase-like ATPases YPTS_2923 SM00388 His Kinase A (phosphoacceptor) domain YPTS_2924 SM00448 cheY-homologous receiver domain YPTS_2924 SM00862 Transcriptional regulatory protein, C terminal YPTS_2927 SM00046 Diacylglycerol kinase catalytic domain (presumed) YPTS_2941 SM00116 Domain in cystathionine beta-synthase and other proteins. YPTS_2941 SM01240 YPTS_2941 YPTS_2947 SM00564 beta-propeller repeat YPTS_2951 SM00530 Helix-turn-helix XRE-family like proteins YPTS_2952 SM00028 Tetratricopeptide repeats YPTS_2954 SM00562 YPTS_2954 YPTS_2955 SM00247 Beta/gamma crystallins YPTS_2957 SM00710 Parallel beta-helix repeats YPTS_2957 SM00869 Autotransporter beta-domain YPTS_2958 SM00869 Autotransporter beta-domain YPTS_2964 SM00271 DnaJ molecular chaperone homology domain YPTS_2981 SM00938 Nitrogen regulatory protein P-II YPTS_2984 SM00382 ATPases associated with a variety of cellular activities YPTS_2984 SM00448 cheY-homologous receiver domain YPTS_2986 SM00387 Histidine kinase-like ATPases YPTS_2986 SM00388 His Kinase A (phosphoacceptor) domain YPTS_2990 SM01211 YPTS_2990 YPTS_2991 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_3001 SM00358 Double-stranded RNA binding motif YPTS_3001 SM00535 Ribonuclease III family YPTS_3011 SM00487 DEAD-like helicases superfamily YPTS_3011 SM00490 helicase superfamily c-terminal domain YPTS_3013 SM00248 ankyrin repeats YPTS_3017 SM00986 Uracil DNA glycosylase superfamily YPTS_3017 SM00987 UreE urease accessory protein, C-terminal domain YPTS_3022 SM00797 Allophanate hydrolase subunit 2 YPTS_3023 SM00796 Allophanate hydrolase subunit 1 YPTS_3034 SM00387 Histidine kinase-like ATPases YPTS_3034 SM00388 His Kinase A (phosphoacceptor) domain YPTS_3035 SM00448 cheY-homologous receiver domain YPTS_3035 SM00862 Transcriptional regulatory protein, C terminal YPTS_3044 SM00342 helix_turn_helix, arabinose operon control protein YPTS_3057 SM00988 UreE urease accessory protein, N-terminal domain YPTS_3062 SM00382 ATPases associated with a variety of cellular activities YPTS_3063 SM00382 ATPases associated with a variety of cellular activities YPTS_3067 SM00357 Cold shock protein domain YPTS_3076 SM00382 ATPases associated with a variety of cellular activities YPTS_3082 SM00479 YPTS_3082 YPTS_3085 SM00849 Metallo-beta-lactamase superfamily YPTS_3086 SM00257 Lysin motif YPTS_3093 SM00382 ATPases associated with a variety of cellular activities YPTS_3093 SM00930 YPTS_3093 YPTS_3101 SM01322 YPTS_3101 YPTS_3105 SM00977 TilS substrate C-terminal domain YPTS_3108 SM00481 DNA polymerase alpha chain like domain YPTS_3114 SM00935 Outer membrane protein (OmpH-like) YPTS_3116 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTS_3125 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTS_3135 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YPTS_3135 SM00475 5'-3' exonuclease YPTS_3143 SM00925 MltA specific insert domain YPTS_3144 SM00646 YPTS_3144 YPTS_3157 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YPTS_3159 SM00927 DNA mismatch repair enzyme MutH YPTS_3164 SM00563 Phosphate acyltransferases YPTS_3166 SM00354 helix_turn _helix lactose operon repressor YPTS_3171 SM00849 Metallo-beta-lactamase superfamily YPTS_3173 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTS_3173 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_3173 SM00319 Homologues of the ligand binding domain of Tar YPTS_3175 SM00862 Transcriptional regulatory protein, C terminal YPTS_3186 SM00382 ATPases associated with a variety of cellular activities YPTS_3190 SM00947 Carbonic anhydrase YPTS_3193 SM00869 Autotransporter beta-domain YPTS_3196 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTS_3196 SM01134 YPTS_3196 YPTS_3213 SM00354 helix_turn _helix lactose operon repressor YPTS_3216 SM00354 helix_turn _helix lactose operon repressor YPTS_3224 SM00382 ATPases associated with a variety of cellular activities YPTS_3225 SM00382 ATPases associated with a variety of cellular activities YPTS_3246 SM00778 Zinc-binding domain of primase-helicase YPTS_3246 SM00885 D5 N terminal like YPTS_3247 SM00530 Helix-turn-helix XRE-family like proteins YPTS_3249 SM00530 Helix-turn-helix XRE-family like proteins YPTS_3254 SM00530 Helix-turn-helix XRE-family like proteins YPTS_3263 SM01022 YPTS_3263 YPTS_3264 SM00479 YPTS_3264 YPTS_3295 SM00937 YPTS_3295 YPTS_3301 SM00387 Histidine kinase-like ATPases YPTS_3301 SM00388 His Kinase A (phosphoacceptor) domain YPTS_3302 SM00448 cheY-homologous receiver domain YPTS_3302 SM00862 Transcriptional regulatory protein, C terminal YPTS_3317 SM01011 Aminopeptidase P, N-terminal domain YPTS_3329 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTS_3330 SM00861 Transketolase, pyrimidine binding domain YPTS_3336 SM00731 SprT homologues. YPTS_3342 SM00732 Likely ribonuclease with RNase H fold. YPTS_3345 SM00382 ATPases associated with a variety of cellular activities YPTS_3350 SM01152 YPTS_3350 YPTS_3352 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_3358 SM00478 endonuclease III YPTS_3358 SM00525 YPTS_3358 YPTS_3365 SM00382 ATPases associated with a variety of cellular activities YPTS_3380 SM00382 ATPases associated with a variety of cellular activities YPTS_3380 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_3395 SM00421 helix_turn_helix, Lux Regulon YPTS_3400 SM01006 Siderophore biosynthesis protein domain YPTS_3406 SM00354 helix_turn _helix lactose operon repressor YPTS_3422 SM00869 Autotransporter beta-domain YPTS_3423 SM00869 Autotransporter beta-domain YPTS_3428 SM00382 ATPases associated with a variety of cellular activities YPTS_3429 SM00382 ATPases associated with a variety of cellular activities YPTS_3435 SM00823 Phosphopantetheine attachment site YPTS_3435 SM00825 Beta-ketoacyl synthase YPTS_3440 SM00364 Leucine-rich repeats, bacterial type YPTS_3441 SM00869 Autotransporter beta-domain YPTS_3446 SM00052 Putative diguanylate phosphodiesterase YPTS_3446 SM00091 PAS domain YPTS_3446 SM00267 diguanylate cyclase YPTS_3463 SM00862 Transcriptional regulatory protein, C terminal YPTS_3477 SM00858 YPTS_3477 YPTS_3481 SM00382 ATPases associated with a variety of cellular activities YPTS_3486 SM00382 ATPases associated with a variety of cellular activities YPTS_3503 SM00060 Fibronectin type 3 domain YPTS_3503 SM00636 YPTS_3503 YPTS_3504 SM00060 Fibronectin type 3 domain YPTS_3504 SM00495 Chitin-binding domain type 3 YPTS_3526 SM00342 helix_turn_helix, arabinose operon control protein YPTS_3529 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_3532 SM00563 Phosphate acyltransferases YPTS_3533 SM00434 DNA Topoisomerase IV YPTS_3536 SM00387 Histidine kinase-like ATPases YPTS_3536 SM00433 TopoisomeraseII YPTS_3552 SM01118 YPTS_3552 YPTS_3553 SM00287 Bacterial SH3 domain homologues YPTS_3555 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YPTS_3557 SM00905 Dihydroneopterin aldolase YPTS_3558 SM01207 YPTS_3558 YPTS_3561 SM00400 zinc finger YPTS_3561 SM00493 YPTS_3561 YPTS_3561 SM00766 DNA primase DnaG DnaB-binding YPTS_3621 SM01217 YPTS_3621 YPTS_3626 SM00354 helix_turn _helix lactose operon repressor YPTS_3628 SM00382 ATPases associated with a variety of cellular activities YPTS_3631 SM00869 Autotransporter beta-domain YPTS_3645 SM00912 haemagglutination activity domain YPTS_3647 SM00327 von Willebrand factor (vWF) type A domain YPTS_3649 SM00327 von Willebrand factor (vWF) type A domain YPTS_3650 SM00327 von Willebrand factor (vWF) type A domain YPTS_3652 SM00220 Serine/Threonine protein kinases, catalytic domain YPTS_3656 SM00869 Autotransporter beta-domain YPTS_3661 SM00858 YPTS_3661 YPTS_3665 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_3665 SM00895 YPTS_3665 YPTS_3681 SM00749 bacterial OsmY and nodulation domain YPTS_3684 SM00073 Histidine Phosphotransfer domain YPTS_3684 SM00091 PAS domain YPTS_3684 SM00387 Histidine kinase-like ATPases YPTS_3684 SM00388 His Kinase A (phosphoacceptor) domain YPTS_3684 SM00448 cheY-homologous receiver domain YPTS_3686 SM00729 Elongator protein 3, MiaB family, Radical SAM YPTS_3697 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTS_3698 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YPTS_3705 SM00382 ATPases associated with a variety of cellular activities YPTS_3707 SM00116 Domain in cystathionine beta-synthase and other proteins. YPTS_3711 SM00382 ATPases associated with a variety of cellular activities YPTS_3721 SM00354 helix_turn _helix lactose operon repressor YPTS_3723 SM00642 Alpha-amylase domain YPTS_3748 SM00316 Ribosomal protein S1-like RNA-binding domain YPTS_3753 SM00052 Putative diguanylate phosphodiesterase YPTS_3753 SM00267 diguanylate cyclase YPTS_3754 SM00829 Enoylreductase YPTS_3759 SM00878 Biotin carboxylase C-terminal domain YPTS_3767 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_3767 SM00895 YPTS_3767 YPTS_3771 SM00849 Metallo-beta-lactamase superfamily YPTS_3774 SM00357 Cold shock protein domain YPTS_3775 SM00357 Cold shock protein domain YPTS_3776 SM00357 Cold shock protein domain YPTS_3785 SM00382 ATPases associated with a variety of cellular activities YPTS_3792 SM00382 ATPases associated with a variety of cellular activities YPTS_3795 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_3797 SM01133 YPTS_3797 YPTS_3800 SM00342 helix_turn_helix, arabinose operon control protein YPTS_3813 SM00382 ATPases associated with a variety of cellular activities YPTS_3813 SM01086 C-terminal, D2-small domain, of ClpB protein YPTS_3828 SM00382 ATPases associated with a variety of cellular activities YPTS_3838 SM00912 haemagglutination activity domain YPTS_3839 SM01018 B12 binding domain YPTS_3840 SM00346 helix_turn_helix isocitrate lyase regulation YPTS_3863 SM00422 helix_turn_helix, mercury resistance YPTS_3865 SM00662 RNA polymerases D YPTS_3866 SM00363 S4 RNA-binding domain YPTS_3866 SM01390 YPTS_3866 YPTS_3879 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YPTS_3880 SM01374 YPTS_3880 YPTS_3884 SM00322 K homology RNA-binding domain YPTS_3887 SM01382 YPTS_3887 YPTS_3887 SM01383 YPTS_3887 YPTS_3891 SM01403 YPTS_3891 YPTS_3895 SM00838 Elongation factor G C-terminus YPTS_3895 SM00889 Elongation factor G, domain IV YPTS_3908 SM00382 ATPases associated with a variety of cellular activities YPTS_3913 SM00382 ATPases associated with a variety of cellular activities YPTS_3914 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_3921 SM00100 Cyclic nucleotide-monophosphate binding domain YPTS_3921 SM00419 helix_turn_helix, cAMP Regulatory protein YPTS_3930 SM00354 helix_turn _helix lactose operon repressor YPTS_3956 SM00363 S4 RNA-binding domain YPTS_3959 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_3959 SM00387 Histidine kinase-like ATPases YPTS_3959 SM00388 His Kinase A (phosphoacceptor) domain YPTS_3960 SM00448 cheY-homologous receiver domain YPTS_3960 SM00862 Transcriptional regulatory protein, C terminal YPTS_3962 SM00316 Ribosomal protein S1-like RNA-binding domain YPTS_3962 SM00732 Likely ribonuclease with RNase H fold. YPTS_3963 SM00899 YPTS_3963 YPTS_3972 SM00421 helix_turn_helix, Lux Regulon YPTS_3973 SM00450 Rhodanese Homology Domain YPTS_3975 SM00420 helix_turn_helix, Deoxyribose operon repressor YPTS_3975 SM01134 YPTS_3975 YPTS_3983 SM00642 Alpha-amylase domain YPTS_3984 SM00642 Alpha-amylase domain YPTS_3986 SM00257 Lysin motif YPTS_3986 SM00634 Bacterial Ig-like domain (group 1) YPTS_3990 SM00859 Semialdehyde dehydrogenase, NAD binding domain YPTS_3997 SM00354 helix_turn _helix lactose operon repressor YPTS_4000 SM00448 cheY-homologous receiver domain YPTS_4000 SM00862 Transcriptional regulatory protein, C terminal YPTS_4006 SM00382 ATPases associated with a variety of cellular activities YPTS_4007 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_4007 SM00387 Histidine kinase-like ATPases YPTS_4007 SM00388 His Kinase A (phosphoacceptor) domain YPTS_4007 SM00448 cheY-homologous receiver domain YPTS_4020 SM00382 ATPases associated with a variety of cellular activities YPTS_4027 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPTS_4028 SM00235 Zinc-dependent metalloprotease YPTS_4039 SM00710 Parallel beta-helix repeats YPTS_4039 SM00869 Autotransporter beta-domain YPTS_4043 SM00052 Putative diguanylate phosphodiesterase YPTS_4052 SM00052 Putative diguanylate phosphodiesterase YPTS_4052 SM00267 diguanylate cyclase YPTS_4054 SM00382 ATPases associated with a variety of cellular activities YPTS_4055 SM00382 ATPases associated with a variety of cellular activities YPTS_4061 SM00912 haemagglutination activity domain YPTS_4064 SM00387 Histidine kinase-like ATPases YPTS_4065 SM00421 helix_turn_helix, Lux Regulon YPTS_4065 SM00448 cheY-homologous receiver domain YPTS_4078 SM00382 ATPases associated with a variety of cellular activities YPTS_4092 SM00382 ATPases associated with a variety of cellular activities YPTS_4097 SM00487 DEAD-like helicases superfamily YPTS_4104 SM00342 helix_turn_helix, arabinose operon control protein YPTS_4106 SM00382 ATPases associated with a variety of cellular activities YPTS_4126 SM00642 Alpha-amylase domain YPTS_4146 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YPTS_4146 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YPTS_4146 SM01358 YPTS_4146 YPTS_4149 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YPTS_4160 SM00345 helix_turn_helix gluconate operon transcriptional repressor YPTS_4160 SM00895 YPTS_4160 YPTS_4166 SM00382 ATPases associated with a variety of cellular activities YPTS_4167 SM00327 von Willebrand factor (vWF) type A domain YPTS_4169 SM00344 helix_turn_helix ASNC type YPTS_4171 SM01228 YPTS_4171 YPTS_4180 SM00382 ATPases associated with a variety of cellular activities YPTS_4189 SM00382 ATPases associated with a variety of cellular activities YPTS_4192 SM00062 Bacterial periplasmic substrate-binding proteins YPTS_4203 SM01234 YPTS_4203 YPTS_4221 SM00194 Protein tyrosine phosphatase, catalytic domain YPTS_4221 SM00404 Protein tyrosine phosphatase, catalytic domain motif YPTS_4224 SM00220 Serine/Threonine protein kinases, catalytic domain YPTS_4232 SM00155 Phospholipase D. Active site motifs. YPTS_4241 SM00857 Resolvase, N terminal domain YPTS_4257 SM00470 ParB-like nuclease domain YPTS_4270 SM00364 Leucine-rich repeats, bacterial type YPTS_4285 SM00382 ATPases associated with a variety of cellular activities