locus-tag class description YPK_0001 PF00308 Bacterial dnaA protein YPK_0001 PF08299 Bacterial dnaA protein helix-turn-helix YPK_0001 PF11638 DnaA N-terminal domain YPK_0002 PF02767 DNA polymerase III beta subunit, central domain YPK_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain YPK_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain YPK_0003 PF02463 RecF/RecN/SMC N terminal domain YPK_0004 PF01751 Toprim domain YPK_0004 PF18053 DNA gyrase B subunit insert domain YPK_0004 PF00204 DNA gyrase B YPK_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_0004 PF00986 DNA gyrase B subunit, carboxyl terminus YPK_0007 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPK_0008 PF13291 ACT domain YPK_0008 PF00291 Pyridoxal-phosphate dependent enzyme YPK_0009 PF12566 Protein of unknown function (DUF3748) YPK_0009 PF07676 WD40-like Beta Propeller Repeat YPK_0010 PF07119 Protein of unknown function (DUF1375) YPK_0011 PF00011 Hsp20/alpha crystallin family YPK_0012 PF00011 Hsp20/alpha crystallin family YPK_0013 PF06826 Predicted Permease Membrane Region YPK_0013 PF02080 TrkA-C domain YPK_0014 PF00155 Aminotransferase class I and II YPK_0016 PF00128 Alpha amylase, catalytic domain YPK_0017 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_0017 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_0019 PF13488 Glycine zipper YPK_0019 PF00691 OmpA family YPK_0021 PF03352 Methyladenine glycosylase YPK_0022 PF02091 Glycyl-tRNA synthetase alpha subunit YPK_0023 PF05746 DALR anticodon binding domain YPK_0023 PF02092 Glycyl-tRNA synthetase beta subunit YPK_0025 PF11254 Protein of unknown function (DUF3053) YPK_0026 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_0026 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_0026 PF02378 Phosphotransferase system, EIIC YPK_0027 PF01232 Mannitol dehydrogenase Rossmann domain YPK_0027 PF08125 Mannitol dehydrogenase C-terminal domain YPK_0028 PF05068 Mannitol repressor YPK_0030 PF10928 Protein of unknown function (DUF2810) YPK_0034 PF02203 Tar ligand binding domain homologue YPK_0034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_0034 PF00672 HAMP domain YPK_0035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPK_0035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPK_0036 PF02634 FdhD/NarQ family YPK_0037 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_0037 PF00384 Molybdopterin oxidoreductase YPK_0037 PF01568 Molydopterin dinucleotide binding domain YPK_0038 PF01568 Molydopterin dinucleotide binding domain YPK_0038 PF00384 Molybdopterin oxidoreductase YPK_0038 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_0039 PF13247 4Fe-4S dicluster domain YPK_0039 PF09163 Formate dehydrogenase N, transmembrane YPK_0040 PF01292 Prokaryotic cytochrome b561 YPK_0041 PF04216 Protein involved in formate dehydrogenase formation YPK_0042 PF12390 Selenocysteine synthase N terminal YPK_0042 PF03841 L-seryl-tRNA selenium transferase YPK_0043 PF09106 Elongation factor SelB, winged helix YPK_0043 PF09107 Elongation factor SelB, winged helix YPK_0043 PF03144 Elongation factor Tu domain 2 YPK_0043 PF00009 Elongation factor Tu GTP binding domain YPK_0048 PF07690 Major Facilitator Superfamily YPK_0050 PF01757 Acyltransferase family YPK_0051 PF00419 Fimbrial protein YPK_0052 PF13953 PapC C-terminal domain YPK_0052 PF13954 PapC N-terminal domain YPK_0052 PF00577 Outer membrane usher protein YPK_0053 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_0053 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_0055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_0055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_0057 PF13407 Periplasmic binding protein domain YPK_0058 PF00005 ABC transporter YPK_0059 PF02653 Branched-chain amino acid transport system / permease component YPK_0060 PF12833 Helix-turn-helix domain YPK_0061 PF14659 Phage integrase, N-terminal SAM-like domain YPK_0061 PF00589 Phage integrase family YPK_0061 PF13356 Arm DNA-binding domain YPK_0066 PF01527 Transposase YPK_0067 PF13683 Integrase core domain YPK_0067 PF13276 HTH-like domain YPK_0068 PF00005 ABC transporter YPK_0069 PF01032 FecCD transport family YPK_0070 PF01032 FecCD transport family YPK_0071 PF01497 Periplasmic binding protein YPK_0074 PF00156 Phosphoribosyl transferase domain YPK_0075 PF00291 Pyridoxal-phosphate dependent enzyme YPK_0076 PF01175 Urocanase Rossmann-like domain YPK_0076 PF17392 Urocanase C-terminal domain YPK_0076 PF17391 Urocanase N-terminal domain YPK_0077 PF00221 Aromatic amino acid lyase YPK_0078 PF00324 Amino acid permease YPK_0079 PF12146 Serine aminopeptidase, S33 YPK_0080 PF08019 Phosphoethanolamine transferase EptA/EptB YPK_0080 PF00884 Sulfatase YPK_0081 PF00072 Response regulator receiver domain YPK_0081 PF00196 Bacterial regulatory proteins, luxR family YPK_0082 PF05231 MASE1 YPK_0082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_0082 PF07730 Histidine kinase YPK_0083 PF07690 Major Facilitator Superfamily YPK_0085 PF05594 Haemagluttinin repeat YPK_0085 PF05860 haemagglutination activity domain YPK_0085 PF13332 Hemagglutinin repeat YPK_0085 PF04829 Pre-toxin domain with VENN motif YPK_0086 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_0086 PF17287 POTRA domain YPK_0086 PF08479 POTRA domain, ShlB-type YPK_0088 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_0089 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0090 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_0090 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0091 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_0091 PF00005 ABC transporter YPK_0092 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_0092 PF00005 ABC transporter YPK_0093 PF01270 Glycosyl hydrolases family 8 YPK_0094 PF00563 EAL domain YPK_0094 PF17154 Gammaproteobacterial periplasmic sensor domain YPK_0094 PF00990 Diguanylate cyclase, GGDEF domain YPK_0094 PF00672 HAMP domain YPK_0095 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPK_0096 PF06917 Periplasmic pectate lyase YPK_0098 PF00375 Sodium:dicarboxylate symporter family YPK_0100 PF00675 Insulinase (Peptidase family M16) YPK_0100 PF05193 Peptidase M16 inactive domain YPK_0101 PF00294 pfkB family carbohydrate kinase YPK_0102 PF01361 Tautomerase enzyme YPK_0103 PF00563 EAL domain YPK_0104 PF05170 AsmA family YPK_0105 PF02611 CDP-diacylglycerol pyrophosphatase YPK_0106 PF03631 Virulence factor BrkB YPK_0111 PF02595 Glycerate kinase family YPK_0112 PF02447 GntP family permease YPK_0113 PF05651 Putative sugar diacid recognition YPK_0113 PF17853 GGDEF-like domain YPK_0113 PF13556 PucR C-terminal helix-turn-helix domain YPK_0114 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_0114 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_0115 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPK_0116 PF01432 Peptidase family M3 YPK_0117 PF04445 Putative SAM-dependent methyltransferase YPK_0118 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPK_0118 PF08548 Peptidase M10 serralysin C terminal YPK_0118 PF00413 Matrixin YPK_0119 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPK_0119 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPK_0120 PF00582 Universal stress protein family YPK_0121 PF10625 Universal stress protein B (UspB) YPK_0122 PF01384 Phosphate transporter family YPK_0124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_0124 PF00072 Response regulator receiver domain YPK_0124 PF08448 PAS fold YPK_0124 PF00512 His Kinase A (phospho-acceptor) domain YPK_0124 PF13188 PAS domain YPK_0125 PF00005 ABC transporter YPK_0126 PF02653 Branched-chain amino acid transport system / permease component YPK_0127 PF13407 Periplasmic binding protein domain YPK_0129 PF01116 Fructose-bisphosphate aldolase class-II YPK_0131 PF00486 Transcriptional regulatory protein, C terminal YPK_0131 PF00072 Response regulator receiver domain YPK_0133 PF02678 Pirin YPK_0133 PF17954 Quercetinase C-terminal cupin domain YPK_0134 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_0134 PF00356 Bacterial regulatory proteins, lacI family YPK_0135 PF02447 GntP family permease YPK_0136 PF01202 Shikimate kinase YPK_0140 PF01914 MarC family integral membrane protein YPK_0141 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPK_0141 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPK_0145 PF11924 Inverse autotransporter, beta-domain YPK_0145 PF02369 Bacterial Ig-like domain (group 1) YPK_0145 PF09134 Invasin, domain 3 YPK_0145 PF07979 Intimin C-type lectin domain YPK_0146 PF07694 5TMR of 5TMR-LYT YPK_0146 PF06580 Histidine kinase YPK_0147 PF02806 Alpha amylase, C-terminal all-beta domain YPK_0147 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPK_0147 PF00128 Alpha amylase, catalytic domain YPK_0148 PF00128 Alpha amylase, catalytic domain YPK_0148 PF18390 Glycogen debranching enzyme C-terminal domain YPK_0148 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPK_0149 PF00483 Nucleotidyl transferase YPK_0150 PF00534 Glycosyl transferases group 1 YPK_0150 PF08323 Starch synthase catalytic domain YPK_0151 PF00343 Carbohydrate phosphorylase YPK_0152 PF01266 FAD dependent oxidoreductase YPK_0152 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPK_0157 PF08220 DeoR-like helix-turn-helix domain YPK_0157 PF00455 DeoR C terminal sensor domain YPK_0158 PF01694 Rhomboid family YPK_0158 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPK_0159 PF00581 Rhodanese-like domain YPK_0160 PF00196 Bacterial regulatory proteins, luxR family YPK_0160 PF17874 MalT-like TPR region YPK_0161 PF00343 Carbohydrate phosphorylase YPK_0162 PF02446 4-alpha-glucanotransferase YPK_0163 PF01521 Iron-sulphur cluster biosynthesis YPK_0163 PF01106 NifU-like domain YPK_0164 PF00156 Phosphoribosyl transferase domain YPK_0165 PF00561 alpha/beta hydrolase fold YPK_0166 PF07338 Protein of unknown function (DUF1471) YPK_0167 PF09012 FeoC like transcriptional regulator YPK_0168 PF02421 Ferrous iron transport protein B YPK_0168 PF07670 Nucleoside recognition YPK_0168 PF17910 FeoB cytosolic helical domain YPK_0168 PF07664 Ferrous iron transport protein B C terminus YPK_0169 PF04023 FeoA domain YPK_0170 PF17674 HHH domain YPK_0170 PF09371 Tex-like protein N-terminal domain YPK_0170 PF16921 Tex protein YqgF-like domain YPK_0170 PF00575 S1 RNA binding domain YPK_0171 PF03449 Transcription elongation factor, N-terminal YPK_0171 PF01272 Transcription elongation factor, GreA/GreB, C-term YPK_0172 PF00486 Transcriptional regulatory protein, C terminal YPK_0172 PF00072 Response regulator receiver domain YPK_0173 PF00512 His Kinase A (phospho-acceptor) domain YPK_0173 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_0173 PF00672 HAMP domain YPK_0174 PF01293 Phosphoenolpyruvate carboxykinase YPK_0175 PF01430 Hsp33 protein YPK_0176 PF01479 S4 domain YPK_0177 PF13419 Haloacid dehalogenase-like hydrolase YPK_0178 PF07095 Intracellular growth attenuator protein IgaA YPK_0180 PF00293 NUDIX domain YPK_0182 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPK_0183 PF03406 Phage tail fibre repeat YPK_0199 PF00182 Chitinase class I YPK_0202 PF06252 Protein of unknown function (DUF1018) YPK_0217 PF13693 Winged helix-turn-helix DNA-binding YPK_0219 PF00905 Penicillin binding protein transpeptidase domain YPK_0219 PF00912 Transglycosylase YPK_0219 PF17092 Penicillin-binding protein OB-like domain YPK_0224 PF00263 Bacterial type II and III secretion system protein YPK_0224 PF03958 Bacterial type II/III secretion system short domain YPK_0225 PF01202 Shikimate kinase YPK_0226 PF01761 3-dehydroquinate synthase YPK_0227 PF05036 Sporulation related domain YPK_0228 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPK_0229 PF00834 Ribulose-phosphate 3 epimerase family YPK_0230 PF13419 Haloacid dehalogenase-like hydrolase YPK_0231 PF00579 tRNA synthetases class I (W and Y) YPK_0232 PF14824 Sirohaem biosynthesis protein central YPK_0232 PF10414 Sirohaem synthase dimerisation region YPK_0232 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPK_0233 PF01226 Formate/nitrite transporter YPK_0234 PF13806 Rieske-like [2Fe-2S] domain YPK_0235 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_0235 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPK_0235 PF04324 BFD-like [2Fe-2S] binding domain YPK_0235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPK_0235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPK_0237 PF07969 Amidohydrolase family YPK_0238 PF07690 Major Facilitator Superfamily YPK_0240 PF00356 Bacterial regulatory proteins, lacI family YPK_0241 PF02056 Family 4 glycosyl hydrolase YPK_0241 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPK_0242 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPK_0243 PF05872 Bacterial protein of unknown function (DUF853) YPK_0244 PF00117 Glutamine amidotransferase class-I YPK_0245 PF00202 Aminotransferase class-III YPK_0247 PF12805 FUSC-like inner membrane protein yccS YPK_0248 PF13545 Crp-like helix-turn-helix domain YPK_0248 PF00027 Cyclic nucleotide-binding domain YPK_0249 PF02566 OsmC-like protein YPK_0251 PF05638 Type VI secretion system effector, Hcp YPK_0254 PF00485 Phosphoribulokinase / Uridine kinase family YPK_0255 PF06794 Uncharacterised protein family (UPF0270) YPK_0256 PF00561 alpha/beta hydrolase fold YPK_0257 PF01810 LysE type translocator YPK_0258 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPK_0259 PF00005 ABC transporter YPK_0260 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0261 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPK_0263 PF00535 Glycosyl transferase family 2 YPK_0264 PF12848 ABC transporter YPK_0264 PF00005 ABC transporter YPK_0265 PF02525 Flavodoxin-like fold YPK_0266 PF00999 Sodium/hydrogen exchanger family YPK_0266 PF02254 TrkA-N domain YPK_0267 PF09526 Probable metal-binding protein (DUF2387) YPK_0268 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_0269 PF04102 SlyX YPK_0270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_0270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPK_0271 PF08348 YheO-like PAS domain YPK_0271 PF13309 HTH domain YPK_0272 PF02635 DsrE/DsrF-like family YPK_0273 PF02635 DsrE/DsrF-like family YPK_0274 PF04077 DsrH like protein YPK_0275 PF00164 Ribosomal protein S12/S23 YPK_0276 PF00177 Ribosomal protein S7p/S5e YPK_0277 PF00679 Elongation factor G C-terminus YPK_0277 PF03764 Elongation factor G, domain IV YPK_0277 PF00009 Elongation factor Tu GTP binding domain YPK_0277 PF03144 Elongation factor Tu domain 2 YPK_0277 PF14492 Elongation Factor G, domain II YPK_0278 PF00009 Elongation factor Tu GTP binding domain YPK_0278 PF03144 Elongation factor Tu domain 2 YPK_0278 PF03143 Elongation factor Tu C-terminal domain YPK_0279 PF01797 Transposase IS200 like YPK_0280 PF04324 BFD-like [2Fe-2S] binding domain YPK_0281 PF00210 Ferritin-like domain YPK_0282 PF00338 Ribosomal protein S10p/S20e YPK_0283 PF00297 Ribosomal protein L3 YPK_0284 PF00573 Ribosomal protein L4/L1 family YPK_0285 PF00276 Ribosomal protein L23 YPK_0286 PF03947 Ribosomal Proteins L2, C-terminal domain YPK_0286 PF00181 Ribosomal Proteins L2, RNA binding domain YPK_0287 PF00203 Ribosomal protein S19 YPK_0288 PF00237 Ribosomal protein L22p/L17e YPK_0289 PF00189 Ribosomal protein S3, C-terminal domain YPK_0289 PF07650 KH domain YPK_0290 PF00252 Ribosomal protein L16p/L10e YPK_0291 PF00831 Ribosomal L29 protein YPK_0292 PF00366 Ribosomal protein S17 YPK_0293 PF00238 Ribosomal protein L14p/L23e YPK_0294 PF00467 KOW motif YPK_0294 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPK_0295 PF00673 ribosomal L5P family C-terminus YPK_0295 PF00281 Ribosomal protein L5 YPK_0296 PF00253 Ribosomal protein S14p/S29e YPK_0297 PF00410 Ribosomal protein S8 YPK_0298 PF00347 Ribosomal protein L6 YPK_0299 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPK_0300 PF00333 Ribosomal protein S5, N-terminal domain YPK_0300 PF03719 Ribosomal protein S5, C-terminal domain YPK_0301 PF00327 Ribosomal protein L30p/L7e YPK_0302 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPK_0303 PF00344 SecY translocase YPK_0304 PF00444 Ribosomal protein L36 YPK_0305 PF00416 Ribosomal protein S13/S18 YPK_0306 PF00411 Ribosomal protein S11 YPK_0307 PF00163 Ribosomal protein S4/S9 N-terminal domain YPK_0307 PF01479 S4 domain YPK_0308 PF01000 RNA polymerase Rpb3/RpoA insert domain YPK_0308 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPK_0308 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPK_0309 PF01196 Ribosomal protein L17 YPK_0310 PF13411 MerR HTH family regulatory protein YPK_0311 PF03889 Alternative ribosome-rescue factor A YPK_0312 PF01741 Large-conductance mechanosensitive channel, MscL YPK_0313 PF02254 TrkA-N domain YPK_0313 PF02080 TrkA-C domain YPK_0314 PF01189 16S rRNA methyltransferase RsmB/F YPK_0314 PF01029 NusB family YPK_0315 PF00551 Formyl transferase YPK_0315 PF02911 Formyl transferase, C-terminal domain YPK_0316 PF01327 Polypeptide deformylase YPK_0317 PF02481 DNA recombination-mediator protein A YPK_0317 PF17782 DprA winged helix domain YPK_0318 PF04361 Protein of unknown function (DUF494) YPK_0319 PF01396 Topoisomerase DNA binding C4 zinc finger YPK_0320 PF01300 Telomere recombination YPK_0321 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPK_0321 PF01488 Shikimate / quinate 5-dehydrogenase YPK_0321 PF08501 Shikimate dehydrogenase substrate binding domain YPK_0322 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_0326 PF01565 FAD binding domain YPK_0326 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPK_0327 PF08279 HTH domain YPK_0327 PF03099 Biotin/lipoate A/B protein ligase family YPK_0327 PF02237 Biotin protein ligase C terminal domain YPK_0328 PF00485 Phosphoribulokinase / Uridine kinase family YPK_0329 PF13673 Acetyltransferase (GNAT) domain YPK_0332 PF03143 Elongation factor Tu C-terminal domain YPK_0332 PF03144 Elongation factor Tu domain 2 YPK_0332 PF00009 Elongation factor Tu GTP binding domain YPK_0333 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPK_0334 PF02357 Transcription termination factor nusG YPK_0334 PF00467 KOW motif YPK_0335 PF00298 Ribosomal protein L11, RNA binding domain YPK_0335 PF03946 Ribosomal protein L11, N-terminal domain YPK_0336 PF00687 Ribosomal protein L1p/L10e family YPK_0337 PF00466 Ribosomal protein L10 YPK_0338 PF00542 Ribosomal protein L7/L12 C-terminal domain YPK_0338 PF16320 Ribosomal protein L7/L12 dimerisation domain YPK_0340 PF04563 RNA polymerase beta subunit YPK_0340 PF00562 RNA polymerase Rpb2, domain 6 YPK_0340 PF10385 RNA polymerase beta subunit external 1 domain YPK_0340 PF04565 RNA polymerase Rpb2, domain 3 YPK_0340 PF04561 RNA polymerase Rpb2, domain 2 YPK_0340 PF04560 RNA polymerase Rpb2, domain 7 YPK_0341 PF04998 RNA polymerase Rpb1, domain 5 YPK_0341 PF04997 RNA polymerase Rpb1, domain 1 YPK_0341 PF05000 RNA polymerase Rpb1, domain 4 YPK_0341 PF04983 RNA polymerase Rpb1, domain 3 YPK_0341 PF00623 RNA polymerase Rpb1, domain 2 YPK_0342 PF06968 Biotin and Thiamin Synthesis associated domain YPK_0342 PF04055 Radical SAM superfamily YPK_0343 PF05690 Thiazole biosynthesis protein ThiG YPK_0345 PF00899 ThiF family YPK_0346 PF02581 Thiamine monophosphate synthase YPK_0347 PF13667 ThiC-associated domain YPK_0347 PF01964 Radical SAM ThiC family YPK_0348 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPK_0349 PF00293 NUDIX domain YPK_0349 PF09297 NADH pyrophosphatase zinc ribbon domain YPK_0351 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPK_0352 PF04493 Endonuclease V YPK_0353 PF04222 Protein of unknown function (DUF416) YPK_0354 PF00216 Bacterial DNA-binding protein YPK_0355 PF07356 Protein of unknown function (DUF1481) YPK_0356 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPK_0356 PF02843 Phosphoribosylglycinamide synthetase, C domain YPK_0356 PF02844 Phosphoribosylglycinamide synthetase, N domain YPK_0357 PF01808 AICARFT/IMPCHase bienzyme YPK_0357 PF02142 MGS-like domain YPK_0363 PF04204 Homoserine O-succinyltransferase YPK_0364 PF01274 Malate synthase YPK_0365 PF00463 Isocitrate lyase family YPK_0366 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPK_0367 PF09339 IclR helix-turn-helix domain YPK_0367 PF01614 Bacterial transcriptional regulator YPK_0368 PF02310 B12 binding domain YPK_0368 PF02607 B12 binding domain YPK_0368 PF00809 Pterin binding enzyme YPK_0368 PF02574 Homocysteine S-methyltransferase YPK_0368 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPK_0372 PF01842 ACT domain YPK_0372 PF00696 Amino acid kinase family YPK_0373 PF00342 Phosphoglucose isomerase YPK_0375 PF06146 Phosphate-starvation-inducible E YPK_0376 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0377 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0377 PF14785 Maltose transport system permease protein MalF P2 domain YPK_0378 PF01547 Bacterial extracellular solute-binding protein YPK_0380 PF17912 MalK OB fold domain YPK_0380 PF00005 ABC transporter YPK_0381 PF02264 LamB porin YPK_0382 PF07148 Maltose operon periplasmic protein precursor (MalM) YPK_0385 PF05638 Type VI secretion system effector, Hcp YPK_0395 PF00004 ATPase family associated with various cellular activities (AAA) YPK_0395 PF07724 AAA domain (Cdc48 subfamily) YPK_0395 PF17871 AAA lid domain YPK_0395 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_0401 PF04717 Type VI secretion system, phage-baseplate injector YPK_0403 PF05593 RHS Repeat YPK_0403 PF03527 RHS protein YPK_0403 PF14220 Domain of unknown function (DUF4329) YPK_0410 PF03527 RHS protein YPK_0410 PF05593 RHS Repeat YPK_0412 PF04717 Type VI secretion system, phage-baseplate injector YPK_0414 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_0414 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_0415 PF02311 AraC-like ligand binding domain YPK_0415 PF12833 Helix-turn-helix domain YPK_0416 PF05025 RbsD / FucU transport protein family YPK_0417 PF00294 pfkB family carbohydrate kinase YPK_0421 PF09084 NMT1/THI5 like YPK_0422 PF00296 Luciferase-like monooxygenase YPK_0423 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0424 PF00005 ABC transporter YPK_0425 PF04221 RelB antitoxin YPK_0426 PF00860 Permease family YPK_0427 PF00872 Transposase, Mutator family YPK_0428 PF00999 Sodium/hydrogen exchanger family YPK_0430 PF03279 Bacterial lipid A biosynthesis acyltransferase YPK_0432 PF00005 ABC transporter YPK_0433 PF02653 Branched-chain amino acid transport system / permease component YPK_0435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_0435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_0436 PF01380 SIS domain YPK_0436 PF00571 CBS domain YPK_0437 PF02798 Glutathione S-transferase, N-terminal domain YPK_0442 PF00313 'Cold-shock' DNA-binding domain YPK_0443 PF00313 'Cold-shock' DNA-binding domain YPK_0444 PF00313 'Cold-shock' DNA-binding domain YPK_0445 PF05433 Glycine zipper 2TM domain YPK_0446 PF00753 Metallo-beta-lactamase superfamily YPK_0447 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPK_0447 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPK_0448 PF02627 Carboxymuconolactone decarboxylase family YPK_0449 PF07690 Major Facilitator Superfamily YPK_0452 PF02954 Bacterial regulatory protein, Fis family YPK_0453 PF01207 Dihydrouridine synthase (Dus) YPK_0455 PF00474 Sodium:solute symporter family YPK_0456 PF06196 Protein of unknown function (DUF997) YPK_0458 PF02785 Biotin carboxylase C-terminal domain YPK_0458 PF00289 Biotin carboxylase, N-terminal domain YPK_0458 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPK_0459 PF00364 Biotin-requiring enzyme YPK_0460 PF01220 Dehydroquinase class II YPK_0461 PF01794 Ferric reductase like transmembrane component YPK_0462 PF00174 Oxidoreductase molybdopterin binding domain YPK_0463 PF08240 Alcohol dehydrogenase GroES-like domain YPK_0463 PF00107 Zinc-binding dehydrogenase YPK_0464 PF00990 Diguanylate cyclase, GGDEF domain YPK_0464 PF17157 Gammaproteobacterial periplasmic sensor domain YPK_0464 PF00563 EAL domain YPK_0466 PF04085 rod shape-determining protein MreC YPK_0467 PF04093 rod shape-determining protein MreD YPK_0468 PF02545 Maf-like protein YPK_0469 PF10150 Ribonuclease E/G family YPK_0469 PF00575 S1 RNA binding domain YPK_0470 PF13116 Protein of unknown function YPK_0470 PF13502 AsmA-like C-terminal region YPK_0471 PF00795 Carbon-nitrogen hydrolase YPK_0472 PF01523 Putative modulator of DNA gyrase YPK_0473 PF18807 Tripartite Tc toxins repeat YPK_0473 PF14431 YwqJ-like deaminase YPK_0478 PF12256 Insecticide toxin TcdB middle/N-terminal region YPK_0478 PF12255 Insecticide toxin TcdB middle/C-terminal region YPK_0478 PF03534 Salmonella virulence plasmid 65kDa B protein YPK_0479 PF18413 Neuraminidase-like domain YPK_0479 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPK_0482 PF03466 LysR substrate binding domain YPK_0482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_0483 PF07869 Protein of unknown function (DUF1656) YPK_0484 PF13533 Biotin-lipoyl like YPK_0485 PF04632 Fusaric acid resistance protein family YPK_0486 PF00171 Aldehyde dehydrogenase family YPK_0488 PF01337 Barstar (barnase inhibitor) YPK_0489 PF04751 Protein of unknown function (DUF615) YPK_0490 PF01523 Putative modulator of DNA gyrase YPK_0492 PF07361 Cytochrome b562 YPK_0493 PF01272 Transcription elongation factor, GreA/GreB, C-term YPK_0493 PF14760 Rnk N-terminus YPK_0494 PF11941 Domain of unknown function (DUF3459) YPK_0494 PF00128 Alpha amylase, catalytic domain YPK_0495 PF00367 phosphotransferase system, EIIB YPK_0495 PF02378 Phosphotransferase system, EIIC YPK_0496 PF00356 Bacterial regulatory proteins, lacI family YPK_0498 PF01042 Endoribonuclease L-PSP YPK_0499 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPK_0499 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPK_0500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPK_0500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPK_0501 PF00381 PTS HPr component phosphorylation site YPK_0502 PF03668 P-loop ATPase protein family YPK_0503 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_0504 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPK_0505 PF04963 Sigma-54 factor, core binding domain YPK_0505 PF04552 Sigma-54, DNA binding domain YPK_0505 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPK_0506 PF00005 ABC transporter YPK_0506 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPK_0507 PF03968 OstA-like protein YPK_0508 PF06835 Lipopolysaccharide-assembly, LptC-related YPK_0510 PF01380 SIS domain YPK_0510 PF00571 CBS domain YPK_0511 PF01699 Sodium/calcium exchanger protein YPK_0512 PF00005 ABC transporter YPK_0513 PF02405 Permease MlaE YPK_0514 PF02470 MlaD protein YPK_0515 PF05494 MlaC protein YPK_0516 PF13466 STAS domain YPK_0517 PF01722 BolA-like protein YPK_0518 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPK_0519 PF13180 PDZ domain YPK_0520 PF00595 PDZ domain YPK_0520 PF13180 PDZ domain YPK_0521 PF06295 Protein of unknown function (DUF1043) YPK_0523 PF03969 AFG1-like ATPase YPK_0524 PF00572 Ribosomal protein L13 YPK_0525 PF00380 Ribosomal protein S9/S16 YPK_0526 PF00043 Glutathione S-transferase, C-terminal domain YPK_0526 PF02798 Glutathione S-transferase, N-terminal domain YPK_0527 PF04386 Stringent starvation protein B YPK_0529 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPK_0529 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_0530 PF00310 Glutamine amidotransferases class-II YPK_0530 PF01493 GXGXG motif YPK_0530 PF04898 Glutamate synthase central domain YPK_0530 PF01645 Conserved region in glutamate synthase YPK_0531 PF16199 Radical_SAM C-terminal domain YPK_0531 PF04055 Radical SAM superfamily YPK_0533 PF00072 Response regulator receiver domain YPK_0533 PF00512 His Kinase A (phospho-acceptor) domain YPK_0533 PF00989 PAS fold YPK_0533 PF01627 Hpt domain YPK_0533 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPK_0533 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_0535 PF00912 Transglycosylase YPK_0536 PF04972 BON domain YPK_0537 PF13580 SIS domain YPK_0538 PF02021 Uncharacterised protein family UPF0102 YPK_0539 PF04348 LppC putative lipoprotein YPK_0540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPK_0541 PF02678 Pirin YPK_0541 PF17954 Quercetinase C-terminal cupin domain YPK_0542 PF03466 LysR substrate binding domain YPK_0542 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_0543 PF13409 Glutathione S-transferase, N-terminal domain YPK_0544 PF07681 DoxX YPK_0546 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPK_0547 PF05957 Bacterial protein of unknown function (DUF883) YPK_0549 PF13721 SecD export protein N-terminal TM region YPK_0550 PF09335 SNARE associated Golgi protein YPK_0552 PF07729 FCD domain YPK_0552 PF00392 Bacterial regulatory proteins, gntR family YPK_0553 PF07690 Major Facilitator Superfamily YPK_0554 PF02614 Glucuronate isomerase YPK_0555 PF01232 Mannitol dehydrogenase Rossmann domain YPK_0555 PF08125 Mannitol dehydrogenase C-terminal domain YPK_0556 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPK_0556 PF08666 SAF domain YPK_0557 PF10688 Bacterial inner membrane protein YPK_0558 PF00375 Sodium:dicarboxylate symporter family YPK_0559 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_0560 PF01863 Protein of unknown function DUF45 YPK_0561 PF03797 Autotransporter beta-domain YPK_0562 PF05175 Methyltransferase small domain YPK_0563 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_0563 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPK_0564 PF03729 Short repeat of unknown function (DUF308) YPK_0567 PF00092 von Willebrand factor type A domain YPK_0569 PF02342 TerD domain YPK_0570 PF00092 von Willebrand factor type A domain YPK_0571 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_0571 PF17287 POTRA domain YPK_0571 PF08479 POTRA domain, ShlB-type YPK_0572 PF13018 Extended Signal Peptide of Type V secretion system YPK_0572 PF04829 Pre-toxin domain with VENN motif YPK_0572 PF13332 Hemagglutinin repeat YPK_0572 PF05860 haemagglutination activity domain YPK_0573 PF05860 haemagglutination activity domain YPK_0573 PF13332 Hemagglutinin repeat YPK_0573 PF05594 Haemagluttinin repeat YPK_0573 PF13018 Extended Signal Peptide of Type V secretion system YPK_0573 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain YPK_0575 PF04829 Pre-toxin domain with VENN motif YPK_0575 PF13332 Hemagglutinin repeat YPK_0576 PF07262 CDI immunity protein YPK_0577 PF04829 Pre-toxin domain with VENN motif YPK_0577 PF05860 haemagglutination activity domain YPK_0577 PF13018 Extended Signal Peptide of Type V secretion system YPK_0577 PF13332 Hemagglutinin repeat YPK_0579 PF05860 haemagglutination activity domain YPK_0579 PF13018 Extended Signal Peptide of Type V secretion system YPK_0579 PF13332 Hemagglutinin repeat YPK_0579 PF04829 Pre-toxin domain with VENN motif YPK_0582 PF04829 Pre-toxin domain with VENN motif YPK_0582 PF05860 haemagglutination activity domain YPK_0582 PF13332 Hemagglutinin repeat YPK_0582 PF13018 Extended Signal Peptide of Type V secretion system YPK_0586 PF00005 ABC transporter YPK_0586 PF03459 TOBE domain YPK_0586 PF17912 MalK OB fold domain YPK_0587 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPK_0588 PF00356 Bacterial regulatory proteins, lacI family YPK_0589 PF13416 Bacterial extracellular solute-binding protein YPK_0590 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0591 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0593 PF00933 Glycosyl hydrolase family 3 N terminal domain YPK_0593 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPK_0593 PF14310 Fibronectin type III-like domain YPK_0595 PF04632 Fusaric acid resistance protein family YPK_0596 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_0596 PF00529 HlyD membrane-fusion protein of T1SS YPK_0603 PF01042 Endoribonuclease L-PSP YPK_0607 PF03466 LysR substrate binding domain YPK_0607 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_0608 PF02661 Fic/DOC family YPK_0610 PF05638 Type VI secretion system effector, Hcp YPK_0617 PF10548 P22AR C-terminal domain YPK_0617 PF08346 AntA/AntB antirepressor YPK_0634 PF04546 Sigma-70, non-essential region YPK_0634 PF03979 Sigma-70 factor, region 1.1 YPK_0634 PF00140 Sigma-70 factor, region 1.2 YPK_0634 PF04542 Sigma-70 region 2 YPK_0634 PF04545 Sigma-70, region 4 YPK_0634 PF04539 Sigma-70 region 3 YPK_0635 PF08278 DNA primase DnaG DnaB-binding YPK_0635 PF10410 DnaB-helicase binding domain of primase YPK_0635 PF01807 CHC2 zinc finger YPK_0635 PF08275 DNA primase catalytic core, N-terminal domain YPK_0636 PF01165 Ribosomal protein S21 YPK_0637 PF00814 Glycoprotease family YPK_0638 PF02660 Glycerol-3-phosphate acyltransferase YPK_0639 PF02152 Dihydroneopterin aldolase YPK_0640 PF02673 Bacitracin resistance protein BacA YPK_0641 PF01966 HD domain YPK_0641 PF12627 Probable RNA and SrmB- binding site of polymerase A YPK_0641 PF01743 Poly A polymerase head domain YPK_0642 PF08239 Bacterial SH3 domain YPK_0643 PF01928 CYTH domain YPK_0644 PF03710 Glutamate-ammonia ligase adenylyltransferase YPK_0644 PF08335 GlnD PII-uridylyltransferase YPK_0645 PF00294 pfkB family carbohydrate kinase YPK_0645 PF01467 Cytidylyltransferase-like YPK_0646 PF13520 Amino acid permease YPK_0647 PF04380 Membrane fusogenic activity YPK_0649 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPK_0650 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPK_0651 PF03738 Glutathionylspermidine synthase preATP-grasp YPK_0652 PF06693 Protein of unknown function (DUF1190) YPK_0654 PF02321 Outer membrane efflux protein YPK_0655 PF00293 NUDIX domain YPK_0656 PF06853 Protein of unknown function (DUF1249) YPK_0657 PF00149 Calcineurin-like phosphoesterase YPK_0658 PF05728 Uncharacterised protein family (UPF0227) YPK_0659 PF01751 Toprim domain YPK_0659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_0659 PF00204 DNA gyrase B YPK_0659 PF00986 DNA gyrase B subunit, carboxyl terminus YPK_0660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_0660 PF03466 LysR substrate binding domain YPK_0661 PF02525 Flavodoxin-like fold YPK_0662 PF00521 DNA gyrase/topoisomerase IV, subunit A YPK_0662 PF03989 DNA gyrase C-terminal domain, beta-propeller YPK_0663 PF01553 Acyltransferase YPK_0665 PF07731 Multicopper oxidase YPK_0665 PF07732 Multicopper oxidase YPK_0666 PF11842 Domain of unknown function (DUF3362) YPK_0666 PF04055 Radical SAM superfamily YPK_0666 PF08497 Radical SAM N-terminal YPK_0667 PF00248 Aldo/keto reductase family YPK_0668 PF00465 Iron-containing alcohol dehydrogenase YPK_0669 PF12833 Helix-turn-helix domain YPK_0669 PF06719 AraC-type transcriptional regulator N-terminus YPK_0670 PF09335 SNARE associated Golgi protein YPK_0671 PF01053 Cys/Met metabolism PLP-dependent enzyme YPK_0672 PF01618 MotA/TolQ/ExbB proton channel family YPK_0673 PF02472 Biopolymer transport protein ExbD/TolR YPK_0682 PF00437 Type II/IV secretion system protein YPK_0685 PF00263 Bacterial type II and III secretion system protein YPK_0685 PF04972 BON domain YPK_0685 PF13629 Pilus formation protein N terminal region YPK_0692 PF18416 N-acetylglucosamine binding protein domain 2 YPK_0692 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YPK_0693 PF00704 Glycosyl hydrolases family 18 YPK_0694 PF00419 Fimbrial protein YPK_0695 PF00577 Outer membrane usher protein YPK_0695 PF13954 PapC N-terminal domain YPK_0695 PF13953 PapC C-terminal domain YPK_0696 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_0696 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_0697 PF09222 Fimbrial adhesin F17-AG, lectin domain YPK_0697 PF00419 Fimbrial protein YPK_0698 PF01497 Periplasmic binding protein YPK_0702 PF00771 FHIPEP family YPK_0703 PF01312 FlhB HrpN YscU SpaS Family YPK_0704 PF01311 Bacterial export proteins, family 1 YPK_0705 PF01313 Bacterial export proteins, family 3 YPK_0706 PF00813 FliP family YPK_0707 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPK_0709 PF02954 Bacterial regulatory protein, Fis family YPK_0709 PF00072 Response regulator receiver domain YPK_0709 PF00158 Sigma-54 interaction domain YPK_0710 PF02049 Flagellar hook-basal body complex protein FliE YPK_0711 PF08345 Flagellar M-ring protein C-terminal YPK_0711 PF01514 Secretory protein of YscJ/FliF family YPK_0714 PF18269 T3SS EscN ATPase C-terminal domain YPK_0714 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_0718 PF13144 Chaperone for flagella basal body P-ring formation YPK_0719 PF00460 Flagella basal body rod protein YPK_0720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_0720 PF00460 Flagella basal body rod protein YPK_0721 PF13861 FlgD Tudor-like domain YPK_0721 PF13860 FlgD Ig-like domain YPK_0721 PF03963 Flagellar hook capping protein - N-terminal region YPK_0722 PF07559 Flagellar basal body protein FlaE YPK_0722 PF00460 Flagella basal body rod protein YPK_0722 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_0725 PF18500 CadC C-terminal domain 1 YPK_0725 PF00486 Transcriptional regulatory protein, C terminal YPK_0726 PF00669 Bacterial flagellin N-terminal helical region YPK_0726 PF00700 Bacterial flagellin C-terminal helical region YPK_0728 PF00700 Bacterial flagellin C-terminal helical region YPK_0728 PF00669 Bacterial flagellin N-terminal helical region YPK_0730 PF01618 MotA/TolQ/ExbB proton channel family YPK_0731 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPK_0731 PF00691 OmpA family YPK_0736 PF05433 Glycine zipper 2TM domain YPK_0737 PF00990 Diguanylate cyclase, GGDEF domain YPK_0737 PF00563 EAL domain YPK_0737 PF03707 Bacterial signalling protein N terminal repeat YPK_0737 PF13188 PAS domain YPK_0738 PF00529 HlyD membrane-fusion protein of T1SS YPK_0738 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_0739 PF00873 AcrB/AcrD/AcrF family YPK_0740 PF00873 AcrB/AcrD/AcrF family YPK_0741 PF07906 ShET2 enterotoxin, N-terminal region YPK_0743 PF03797 Autotransporter beta-domain YPK_0744 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_0744 PF12468 Type III secretion system leucine rich repeat protein YPK_0745 PF12468 Type III secretion system leucine rich repeat protein YPK_0745 PF12468 Type III secretion system leucine rich repeat protein YPK_0745 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_0745 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_0746 PF12468 Type III secretion system leucine rich repeat protein YPK_0746 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_0748 PF03806 AbgT putative transporter family YPK_0749 PF01546 Peptidase family M20/M25/M40 YPK_0749 PF07687 Peptidase dimerisation domain YPK_0750 PF07715 TonB-dependent Receptor Plug Domain YPK_0750 PF00593 TonB dependent receptor YPK_0751 PF08242 Methyltransferase domain YPK_0751 PF00501 AMP-binding enzyme YPK_0751 PF00550 Phosphopantetheine attachment site YPK_0751 PF00668 Condensation domain YPK_0752 PF00550 Phosphopantetheine attachment site YPK_0752 PF00501 AMP-binding enzyme YPK_0752 PF00668 Condensation domain YPK_0752 PF08242 Methyltransferase domain YPK_0755 PF00975 Thioesterase domain YPK_0757 PF00664 ABC transporter transmembrane region YPK_0757 PF08021 Siderophore-interacting FAD-binding domain YPK_0757 PF04954 Siderophore-interacting protein YPK_0757 PF00005 ABC transporter YPK_0758 PF00664 ABC transporter transmembrane region YPK_0758 PF00005 ABC transporter YPK_0762 PF02447 GntP family permease YPK_0763 PF12951 Passenger-associated-transport-repeat YPK_0764 PF04717 Type VI secretion system, phage-baseplate injector YPK_0766 PF03527 RHS protein YPK_0766 PF05593 RHS Repeat YPK_0768 PF05593 RHS Repeat YPK_0768 PF03527 RHS protein YPK_0768 PF14220 Domain of unknown function (DUF4329) YPK_0770 PF05593 RHS Repeat YPK_0770 PF03527 RHS protein YPK_0772 PF03527 RHS protein YPK_0772 PF05593 RHS Repeat YPK_0778 PF00939 Sodium:sulfate symporter transmembrane region YPK_0779 PF00356 Bacterial regulatory proteins, lacI family YPK_0782 PF00593 TonB dependent receptor YPK_0782 PF07715 TonB-dependent Receptor Plug Domain YPK_0783 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPK_0784 PF06276 Ferric iron reductase FhuF-like transporter YPK_0784 PF04183 IucA / IucC family YPK_0786 PF06276 Ferric iron reductase FhuF-like transporter YPK_0786 PF04183 IucA / IucC family YPK_0791 PF03472 Autoinducer binding domain YPK_0791 PF00196 Bacterial regulatory proteins, luxR family YPK_0792 PF00765 Autoinducer synthase YPK_0793 PF02517 CPBP intramembrane metalloprotease YPK_0795 PF03811 InsA N-terminal domain YPK_0795 PF12759 InsA C-terminal domain YPK_0802 PF00691 OmpA family YPK_0802 PF05736 OprF membrane domain YPK_0804 PF00004 ATPase family associated with various cellular activities (AAA) YPK_0804 PF17871 AAA lid domain YPK_0804 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_0804 PF07724 AAA domain (Cdc48 subfamily) YPK_0808 PF12759 InsA C-terminal domain YPK_0808 PF03811 InsA N-terminal domain YPK_0811 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPK_0811 PF01276 Orn/Lys/Arg decarboxylase, major domain YPK_0811 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPK_0812 PF13407 Periplasmic binding protein domain YPK_0813 PF00005 ABC transporter YPK_0814 PF02653 Branched-chain amino acid transport system / permease component YPK_0815 PF07715 TonB-dependent Receptor Plug Domain YPK_0818 PF01464 Transglycosylase SLT domain YPK_0818 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPK_0819 PF04362 Bacterial Fe(2+) trafficking YPK_0820 PF10576 Iron-sulfur binding domain of endonuclease III YPK_0820 PF00633 Helix-hairpin-helix motif YPK_0820 PF00730 HhH-GPD superfamily base excision DNA repair protein YPK_0820 PF14815 NUDIX domain YPK_0821 PF02390 Putative methyltransferase YPK_0822 PF04320 Protein with unknown function (DUF469) YPK_0823 PF04960 Glutaminase YPK_0824 PF11101 Protein of unknown function (DUF2884) YPK_0825 PF12146 Serine aminopeptidase, S33 YPK_0825 PF11647 Membrane Localization Domain YPK_0825 PF11713 Peptidase C80 family YPK_0825 PF07634 RtxA repeat YPK_0825 PF16671 Actin cross-linking domain YPK_0826 PF04055 Radical SAM superfamily YPK_0826 PF06969 HemN C-terminal domain YPK_0827 PF01725 Ham1 family YPK_0828 PF02594 Uncharacterised ACR, YggU family COG1872 YPK_0829 PF02325 YGGT family YPK_0831 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPK_0831 PF03807 NADP oxidoreductase coenzyme F420-dependent YPK_0832 PF01168 Alanine racemase, N-terminal domain YPK_0833 PF00437 Type II/IV secretion system protein YPK_0834 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPK_0835 PF00795 Carbon-nitrogen hydrolase YPK_0836 PF03652 Holliday junction resolvase YPK_0837 PF02622 Uncharacterized ACR, COG1678 YPK_0838 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPK_0838 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPK_0839 PF04452 RNA methyltransferase YPK_0841 PF04231 Endonuclease I YPK_0842 PF10263 SprT-like family YPK_0842 PF17283 SprT-like zinc ribbon domain YPK_0843 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPK_0843 PF02772 S-adenosylmethionine synthetase, central domain YPK_0843 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPK_0845 PF17810 Arginine decarboxylase helical bundle domain YPK_0845 PF17944 Arginine decarboxylase C-terminal helical extension YPK_0845 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPK_0846 PF01797 Transposase IS200 like YPK_0848 PF01797 Transposase IS200 like YPK_0849 PF01435 Peptidase family M48 YPK_0850 PF02780 Transketolase, C-terminal domain YPK_0850 PF00456 Transketolase, thiamine diphosphate binding domain YPK_0850 PF02779 Transketolase, pyrimidine binding domain YPK_0851 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPK_0851 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPK_0852 PF00162 Phosphoglycerate kinase YPK_0853 PF01116 Fructose-bisphosphate aldolase class-II YPK_0854 PF05552 Conserved TM helix YPK_0854 PF00924 Mechanosensitive ion channel YPK_0855 PF01810 LysE type translocator YPK_0856 PF04402 Protein of unknown function (DUF541) YPK_0857 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_0857 PF03466 LysR substrate binding domain YPK_0858 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPK_0859 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_0859 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_0859 PF01842 ACT domain YPK_0860 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPK_0861 PF05164 Cell division protein ZapA YPK_0862 PF03695 Uncharacterised protein family (UPF0149) YPK_0863 PF00557 Metallopeptidase family M24 YPK_0863 PF05195 Aminopeptidase P, N-terminal domain YPK_0864 PF01494 FAD binding domain YPK_0865 PF01494 FAD binding domain YPK_0867 PF01571 Aminomethyltransferase folate-binding domain YPK_0867 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPK_0868 PF01597 Glycine cleavage H-protein YPK_0869 PF02347 Glycine cleavage system P-protein YPK_0871 PF05658 Head domain of trimeric autotransporter adhesin YPK_0871 PF13018 Extended Signal Peptide of Type V secretion system YPK_0871 PF05662 Coiled stalk of trimeric autotransporter adhesin YPK_0871 PF03895 YadA-like membrane anchor domain YPK_0873 PF03006 Haemolysin-III related YPK_0875 PF01571 Aminomethyltransferase folate-binding domain YPK_0876 PF03937 Flavinator of succinate dehydrogenase YPK_0878 PF00072 Response regulator receiver domain YPK_0878 PF00486 Transcriptional regulatory protein, C terminal YPK_0879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_0879 PF00512 His Kinase A (phospho-acceptor) domain YPK_0879 PF00672 HAMP domain YPK_0880 PF06123 Inner membrane protein CreD YPK_0881 PF00258 Flavodoxin YPK_0883 PF16452 Bacteriophage CI repressor C-terminal domain YPK_0883 PF07022 Bacteriophage CI repressor helix-turn-helix domain YPK_0885 PF06892 Phage regulatory protein CII (CP76) YPK_0888 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPK_0892 PF05840 Bacteriophage replication gene A protein (GPA) YPK_0914 PF03406 Phage tail fibre repeat YPK_0920 PF00589 Phage integrase family YPK_0920 PF02899 Phage integrase, N-terminal SAM-like domain YPK_0921 PF10411 Disulfide bond isomerase protein N-terminus YPK_0921 PF13098 Thioredoxin-like domain YPK_0922 PF01368 DHH family YPK_0922 PF02272 DHHA1 domain YPK_0922 PF17768 RecJ OB domain YPK_0923 PF03462 PCRF domain YPK_0923 PF00472 RF-1 domain YPK_0924 PF01336 OB-fold nucleic acid binding domain YPK_0924 PF00152 tRNA synthetases class II (D, K and N) YPK_0925 PF13356 Arm DNA-binding domain YPK_0925 PF14659 Phage integrase, N-terminal SAM-like domain YPK_0925 PF00589 Phage integrase family YPK_0961 PF03551 Transcriptional regulator PadR-like family YPK_0962 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPK_0964 PF13407 Periplasmic binding protein domain YPK_0965 PF02653 Branched-chain amino acid transport system / permease component YPK_0966 PF00005 ABC transporter YPK_0967 PF00005 ABC transporter YPK_0967 PF17912 MalK OB fold domain YPK_0968 PF13416 Bacterial extracellular solute-binding protein YPK_0970 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0971 PF00528 Binding-protein-dependent transport system inner membrane component YPK_0972 PF07745 Glycosyl hydrolase family 53 YPK_0973 PF08532 Beta-galactosidase trimerisation domain YPK_0973 PF08533 Beta-galactosidase C-terminal domain YPK_0973 PF02449 Beta-galactosidase YPK_0974 PF00367 phosphotransferase system, EIIB YPK_0974 PF02378 Phosphotransferase system, EIIC YPK_0975 PF02264 LamB porin YPK_0976 PF00356 Bacterial regulatory proteins, lacI family YPK_0977 PF16338 Domain of unknown function (DUF4968) YPK_0977 PF01055 Glycosyl hydrolases family 31 YPK_0977 PF13802 Galactose mutarotase-like YPK_0977 PF17137 Domain of unknown function (DUF5110) YPK_0978 PF07690 Major Facilitator Superfamily YPK_0979 PF00356 Bacterial regulatory proteins, lacI family YPK_0982 PF01116 Fructose-bisphosphate aldolase class-II YPK_0984 PF00884 Sulfatase YPK_0985 PF13186 Iron-sulfur cluster-binding domain YPK_0985 PF04055 Radical SAM superfamily YPK_0988 PF01979 Amidohydrolase family YPK_0989 PF03610 PTS system fructose IIA component YPK_0990 PF03613 PTS system mannose/fructose/sorbose family IID component YPK_0991 PF03609 PTS system sorbose-specific iic component YPK_0992 PF03830 PTS system sorbose subfamily IIB component YPK_0993 PF01380 SIS domain YPK_0994 PF08013 Tagatose 6 phosphate kinase YPK_0995 PF00455 DeoR C terminal sensor domain YPK_0995 PF08220 DeoR-like helix-turn-helix domain YPK_0996 PF00884 Sulfatase YPK_0997 PF09093 Lyase, catalytic YPK_0997 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPK_0997 PF09092 Lyase, N terminal YPK_0997 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPK_1001 PF00484 Carbonic anhydrase YPK_1004 PF00263 Bacterial type II and III secretion system protein YPK_1004 PF03958 Bacterial type II/III secretion system short domain YPK_1006 PF00482 Type II secretion system (T2SS), protein F YPK_1007 PF07963 Prokaryotic N-terminal methylation motif YPK_1007 PF08334 Type II secretion system (T2SS), protein G YPK_1014 PF01478 Type IV leader peptidase family YPK_1014 PF06750 Bacterial Peptidase A24 N-terminal domain YPK_1018 PF02203 Tar ligand binding domain homologue YPK_1018 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1018 PF00672 HAMP domain YPK_1021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1021 PF03466 LysR substrate binding domain YPK_1022 PF07690 Major Facilitator Superfamily YPK_1023 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1023 PF03466 LysR substrate binding domain YPK_1024 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPK_1024 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPK_1025 PF00356 Bacterial regulatory proteins, lacI family YPK_1026 PF00384 Molybdopterin oxidoreductase YPK_1026 PF01568 Molydopterin dinucleotide binding domain YPK_1027 PF01553 Acyltransferase YPK_1027 PF00501 AMP-binding enzyme YPK_1027 PF13193 AMP-binding enzyme C-terminal domain YPK_1028 PF07690 Major Facilitator Superfamily YPK_1031 PF00248 Aldo/keto reductase family YPK_1032 PF02976 DNA mismatch repair enzyme MutH YPK_1033 PF00293 NUDIX domain YPK_1034 PF05524 PEP-utilising enzyme, N-terminal YPK_1034 PF00391 PEP-utilising enzyme, mobile domain YPK_1034 PF02896 PEP-utilising enzyme, TIM barrel domain YPK_1034 PF01590 GAF domain YPK_1035 PF01790 Prolipoprotein diacylglyceryl transferase YPK_1036 PF00303 Thymidylate synthase YPK_1041 PF17946 RecC C-terminal domain YPK_1042 PF16187 Middle or third domain of peptidase_M16 YPK_1042 PF00675 Insulinase (Peptidase family M16) YPK_1042 PF05193 Peptidase M16 inactive domain YPK_1043 PF13361 UvrD-like helicase C-terminal domain YPK_1043 PF00580 UvrD/REP helicase N-terminal domain YPK_1043 PF12705 PD-(D/E)XK nuclease superfamily YPK_1044 PF13538 UvrD-like helicase C-terminal domain YPK_1045 PF00583 Acetyltransferase (GNAT) family YPK_1045 PF00696 Amino acid kinase family YPK_1046 PF11741 AMIN domain YPK_1046 PF01520 N-acetylmuramoyl-L-alanine amidase YPK_1047 PF06725 3D domain YPK_1047 PF03562 MltA specific insert domain YPK_1048 PF00899 ThiF family YPK_1049 PF02657 Fe-S metabolism associated domain YPK_1050 PF00266 Aminotransferase class-V YPK_1052 PF03466 LysR substrate binding domain YPK_1052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1053 PF04241 Protein of unknown function (DUF423) YPK_1054 PF18125 RlmM ferredoxin-like domain YPK_1054 PF01728 FtsJ-like methyltransferase YPK_1055 PF01367 5'-3' exonuclease, C-terminal SAM fold YPK_1055 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPK_1056 PF11892 Domain of unknown function (DUF3412) YPK_1056 PF03641 Possible lysine decarboxylase YPK_1056 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPK_1057 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPK_1057 PF14489 QueF-like protein YPK_1058 PF07348 Syd protein (SUKH-2) YPK_1059 PF04287 tRNA pseudouridine synthase C YPK_1060 PF00849 RNA pseudouridylate synthase YPK_1061 PF00258 Flavodoxin YPK_1062 PF11944 Protein of unknown function (DUF3461) YPK_1063 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPK_1063 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_1063 PF14602 Hexapeptide repeat of succinyl-transferase YPK_1064 PF08335 GlnD PII-uridylyltransferase YPK_1064 PF01842 ACT domain YPK_1064 PF01966 HD domain YPK_1064 PF01909 Nucleotidyltransferase domain YPK_1065 PF00557 Metallopeptidase family M24 YPK_1066 PF00318 Ribosomal protein S2 YPK_1067 PF00889 Elongation factor TS YPK_1068 PF00696 Amino acid kinase family YPK_1069 PF01765 Ribosome recycling factor YPK_1070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPK_1070 PF13288 DXP reductoisomerase C-terminal domain YPK_1070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPK_1071 PF01255 Putative undecaprenyl diphosphate synthase YPK_1073 PF02163 Peptidase family M50 YPK_1073 PF17820 PDZ domain YPK_1074 PF07244 Surface antigen variable number repeat YPK_1074 PF01103 Surface antigen YPK_1075 PF03938 Outer membrane protein (OmpH-like) YPK_1076 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_1076 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPK_1077 PF07977 FabA-like domain YPK_1078 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPK_1078 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_1079 PF02684 Lipid-A-disaccharide synthetase YPK_1080 PF01351 Ribonuclease HII YPK_1081 PF01336 OB-fold nucleic acid binding domain YPK_1081 PF02811 PHP domain YPK_1081 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPK_1081 PF14579 Helix-hairpin-helix motif YPK_1081 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPK_1082 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPK_1083 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPK_1084 PF11734 TilS substrate C-terminal domain YPK_1084 PF01171 PP-loop family YPK_1084 PF09179 TilS substrate binding domain YPK_1085 PF00034 Cytochrome c YPK_1086 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPK_1087 PF06786 Uncharacterised protein family (UPF0253) YPK_1088 PF07152 YaeQ protein YPK_1089 PF00472 RF-1 domain YPK_1090 PF17185 NlpE C-terminal OB domain YPK_1090 PF04170 NlpE N-terminal domain YPK_1091 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPK_1091 PF04073 Aminoacyl-tRNA editing domain YPK_1091 PF03129 Anticodon binding domain YPK_1092 PF01980 tRNA-methyltransferase O YPK_1092 PF18389 TrmO C-terminal domain YPK_1093 PF16358 RcsF lipoprotein YPK_1094 PF03180 NLPA lipoprotein YPK_1095 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1096 PF09383 NIL domain YPK_1096 PF00005 ABC transporter YPK_1101 PF00248 Aldo/keto reductase family YPK_1104 PF03372 Endonuclease/Exonuclease/phosphatase family YPK_1105 PF01464 Transglycosylase SLT domain YPK_1105 PF01476 LysM domain YPK_1106 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPK_1106 PF00753 Metallo-beta-lactamase superfamily YPK_1107 PF08241 Methyltransferase domain YPK_1108 PF00075 RNase H YPK_1109 PF00929 Exonuclease YPK_1110 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPK_1113 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPK_1114 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1115 PF00005 ABC transporter YPK_1115 PF00571 CBS domain YPK_1116 PF00268 Ribonucleotide reductase, small chain YPK_1117 PF00317 Ribonucleotide reductase, all-alpha domain YPK_1117 PF02867 Ribonucleotide reductase, barrel domain YPK_1117 PF08343 Ribonucleotide reductase N-terminal YPK_1118 PF07972 NrdI Flavodoxin like YPK_1120 PF06392 Acid shock protein repeat YPK_1121 PF09400 Protein of unknown function (DUF2002) YPK_1122 PF06711 Protein of unknown function (DUF1198) YPK_1124 PF00313 'Cold-shock' DNA-binding domain YPK_1125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_1126 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1127 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1127 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_1128 PF00005 ABC transporter YPK_1129 PF00005 ABC transporter YPK_1131 PF00547 Urease, gamma subunit YPK_1132 PF00699 Urease beta subunit YPK_1133 PF01979 Amidohydrolase family YPK_1133 PF00449 Urease alpha-subunit, N-terminal domain YPK_1134 PF05194 UreE urease accessory protein, C-terminal domain YPK_1134 PF02814 UreE urease accessory protein, N-terminal domain YPK_1135 PF01730 UreF YPK_1136 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPK_1137 PF01774 UreD urease accessory protein YPK_1138 PF03253 Urea transporter YPK_1139 PF03824 High-affinity nickel-transport protein YPK_1140 PF06411 HdeA/HdeB family YPK_1141 PF07885 Ion channel YPK_1141 PF02254 TrkA-N domain YPK_1142 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPK_1143 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPK_1144 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_1145 PF02378 Phosphotransferase system, EIIC YPK_1146 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPK_1147 PF12833 Helix-turn-helix domain YPK_1147 PF07883 Cupin domain YPK_1148 PF04794 YdjC-like protein YPK_1151 PF17206 SeqA protein N-terminal domain YPK_1151 PF03925 SeqA protein C-terminal domain YPK_1152 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPK_1152 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPK_1152 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPK_1152 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPK_1155 PF00486 Transcriptional regulatory protein, C terminal YPK_1155 PF00072 Response regulator receiver domain YPK_1156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_1156 PF02702 Osmosensitive K+ channel His kinase sensor domain YPK_1156 PF00512 His Kinase A (phospho-acceptor) domain YPK_1156 PF13493 Domain of unknown function (DUF4118) YPK_1156 PF13492 GAF domain YPK_1157 PF02669 K+-transporting ATPase, c chain YPK_1159 PF03814 Potassium-transporting ATPase A subunit YPK_1160 PF10725 Protein of unknown function (DUF2517) YPK_1162 PF08349 Protein of unknown function (DUF1722) YPK_1163 PF00875 DNA photolyase YPK_1163 PF03441 FAD binding domain of DNA photolyase YPK_1164 PF02112 cAMP phosphodiesterases class-II YPK_1165 PF01784 NIF3 (NGG1p interacting factor 3) YPK_1167 PF02682 Carboxyltransferase domain, subdomain C and D YPK_1168 PF02626 Carboxyltransferase domain, subdomain A and B YPK_1169 PF03746 LamB/YcsF family YPK_1172 PF01470 Pyroglutamyl peptidase YPK_1173 PF03167 Uracil DNA glycosylase superfamily YPK_1174 PF01228 Glycine radical YPK_1177 PF12796 Ankyrin repeats (3 copies) YPK_1179 PF00270 DEAD/DEAH box helicase YPK_1179 PF00271 Helicase conserved C-terminal domain YPK_1180 PF05175 Methyltransferase small domain YPK_1181 PF02910 Fumarate reductase flavoprotein C-term YPK_1181 PF00890 FAD binding domain YPK_1182 PF08281 Sigma-70, region 4 YPK_1182 PF04542 Sigma-70 region 2 YPK_1183 PF03872 Anti sigma-E protein RseA, N-terminal domain YPK_1183 PF03873 Anti sigma-E protein RseA, C-terminal domain YPK_1184 PF17188 MucB/RseB C-terminal domain YPK_1184 PF03888 MucB/RseB N-terminal domain YPK_1187 PF00009 Elongation factor Tu GTP binding domain YPK_1187 PF03144 Elongation factor Tu domain 2 YPK_1187 PF06421 GTP-binding protein LepA C-terminus YPK_1187 PF00679 Elongation factor G C-terminus YPK_1188 PF10502 Signal peptidase, peptidase S26 YPK_1189 PF14622 Ribonuclease-III-like YPK_1189 PF00035 Double-stranded RNA binding motif YPK_1190 PF07650 KH domain YPK_1190 PF01926 50S ribosome-binding GTPase YPK_1191 PF11967 Recombination protein O N terminal YPK_1191 PF02565 Recombination protein O C terminal YPK_1192 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPK_1193 PF01648 4'-phosphopantetheinyl transferase superfamily YPK_1194 PF12838 4Fe-4S dicluster domain YPK_1214 PF06530 Phage antitermination protein Q YPK_1248 PF01418 Helix-turn-helix domain, rpiR family YPK_1248 PF01380 SIS domain YPK_1249 PF01380 SIS domain YPK_1251 PF14437 MafB19-like deaminase YPK_1252 PF01464 Transglycosylase SLT domain YPK_1252 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_1253 PF02769 AIR synthase related protein, C-terminal domain YPK_1253 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPK_1253 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPK_1257 PF00512 His Kinase A (phospho-acceptor) domain YPK_1257 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_1258 PF13942 YfhG lipoprotein YPK_1259 PF00072 Response regulator receiver domain YPK_1259 PF00158 Sigma-54 interaction domain YPK_1261 PF00795 Carbon-nitrogen hydrolase YPK_1261 PF02540 NAD synthase YPK_1262 PF00543 Nitrogen regulatory protein P-II YPK_1263 PF14503 YhfZ C-terminal domain YPK_1263 PF14502 Helix-turn-helix domain YPK_1264 PF00042 Globin YPK_1264 PF00175 Oxidoreductase NAD-binding domain YPK_1264 PF00970 Oxidoreductase FAD-binding domain YPK_1265 PF00464 Serine hydroxymethyltransferase YPK_1268 PF13505 Outer membrane protein beta-barrel domain YPK_1269 PF12832 MFS_1 like family YPK_1270 PF00874 PRD domain YPK_1271 PF06226 Protein of unknown function (DUF1007) YPK_1272 PF03824 High-affinity nickel-transport protein YPK_1273 PF00459 Inositol monophosphatase family YPK_1274 PF00588 SpoU rRNA Methylase family YPK_1275 PF02082 Transcriptional regulator YPK_1276 PF00266 Aminotransferase class-V YPK_1277 PF01592 NifU-like N terminal domain YPK_1278 PF01521 Iron-sulphur cluster biosynthesis YPK_1279 PF07743 HSCB C-terminal oligomerisation domain YPK_1279 PF00226 DnaJ domain YPK_1280 PF00012 Hsp70 protein YPK_1281 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_1282 PF04384 Iron-sulphur cluster assembly YPK_1284 PF00883 Cytosol aminopeptidase family, catalytic domain YPK_1284 PF12404 Peptidase YPK_1285 PF14581 SseB protein C-terminal domain YPK_1285 PF07179 SseB protein N-terminal domain YPK_1286 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPK_1286 PF03797 Autotransporter beta-domain YPK_1286 PF03212 Pertactin YPK_1287 PF03797 Autotransporter beta-domain YPK_1287 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPK_1287 PF03212 Pertactin YPK_1287 PF13018 Extended Signal Peptide of Type V secretion system YPK_1289 PF00334 Nucleoside diphosphate kinase YPK_1290 PF04055 Radical SAM superfamily YPK_1292 PF13464 Domain of unknown function (DUF4115) YPK_1293 PF04551 GcpE protein YPK_1294 PF13393 Histidyl-tRNA synthetase YPK_1294 PF03129 Anticodon binding domain YPK_1295 PF09976 Tetratricopeptide repeat-like domain YPK_1296 PF13360 PQQ-like domain YPK_1297 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPK_1297 PF01926 50S ribosome-binding GTPase YPK_1299 PF07191 zinc-ribbons YPK_1301 PF02601 Exonuclease VII, large subunit YPK_1301 PF13742 OB-fold nucleic acid binding domain YPK_1302 PF00571 CBS domain YPK_1302 PF00478 IMP dehydrogenase / GMP reductase domain YPK_1303 PF02540 NAD synthase YPK_1303 PF00117 Glutamine amidotransferase class-I YPK_1303 PF00958 GMP synthase C terminal domain YPK_1304 PF05638 Type VI secretion system effector, Hcp YPK_1315 PF02369 Bacterial Ig-like domain (group 1) YPK_1315 PF07979 Intimin C-type lectin domain YPK_1315 PF09134 Invasin, domain 3 YPK_1315 PF11924 Inverse autotransporter, beta-domain YPK_1321 PF08543 Phosphomethylpyrimidine kinase YPK_1324 PF00781 Diacylglycerol kinase catalytic domain YPK_1326 PF07411 Domain of unknown function (DUF1508) YPK_1327 PF00072 Response regulator receiver domain YPK_1327 PF00486 Transcriptional regulatory protein, C terminal YPK_1328 PF00512 His Kinase A (phospho-acceptor) domain YPK_1328 PF00672 HAMP domain YPK_1328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_1329 PF07690 Major Facilitator Superfamily YPK_1330 PF00873 AcrB/AcrD/AcrF family YPK_1331 PF00873 AcrB/AcrD/AcrF family YPK_1332 PF13533 Biotin-lipoyl like YPK_1333 PF00005 ABC transporter YPK_1333 PF08402 TOBE domain YPK_1334 PF00155 Aminotransferase class I and II YPK_1334 PF00392 Bacterial regulatory proteins, gntR family YPK_1335 PF00202 Aminotransferase class-III YPK_1337 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1338 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1340 PF00012 Hsp70 protein YPK_1341 PF01769 Divalent cation transporter YPK_1341 PF03448 MgtE intracellular N domain YPK_1341 PF00571 CBS domain YPK_1343 PF02541 Ppx/GppA phosphatase family YPK_1344 PF17941 Polyphosphate kinase C-terminal domain 1 YPK_1344 PF13089 Polyphosphate kinase N-terminal domain YPK_1344 PF02503 Polyphosphate kinase middle domain YPK_1344 PF13090 Polyphosphate kinase C-terminal domain 2 YPK_1345 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1346 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1347 PF00005 ABC transporter YPK_1349 PF13302 Acetyltransferase (GNAT) domain YPK_1350 PF00551 Formyl transferase YPK_1351 PF00586 AIR synthase related protein, N-terminal domain YPK_1351 PF02769 AIR synthase related protein, C-terminal domain YPK_1353 PF00860 Permease family YPK_1354 PF00308 Bacterial dnaA protein YPK_1355 PF03960 ArsC family YPK_1356 PF07720 Tetratricopeptide repeat YPK_1356 PF01435 Peptidase family M48 YPK_1357 PF01594 AI-2E family transporter YPK_1360 PF00578 AhpC/TSA family YPK_1361 PF01842 ACT domain YPK_1362 PF00701 Dihydrodipicolinate synthetase family YPK_1363 PF06804 NlpB/DapX lipoprotein YPK_1364 PF01259 SAICAR synthetase YPK_1366 PF04228 Putative neutral zinc metallopeptidase YPK_1367 PF04284 Protein of unknown function (DUF441) YPK_1368 PF08351 Domain of unknown function (DUF1726) YPK_1368 PF13718 GNAT acetyltransferase 2 YPK_1368 PF05127 Helicase YPK_1368 PF17176 tRNA-binding domain YPK_1370 PF13980 Uncharacterised protein family (UPF0370) YPK_1371 PF02557 D-alanyl-D-alanine carboxypeptidase YPK_1372 PF07687 Peptidase dimerisation domain YPK_1372 PF01546 Peptidase family M20/M25/M40 YPK_1373 PF03960 ArsC family YPK_1376 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1377 PF08402 TOBE domain YPK_1377 PF00005 ABC transporter YPK_1378 PF00884 Sulfatase YPK_1379 PF13186 Iron-sulfur cluster-binding domain YPK_1379 PF04055 Radical SAM superfamily YPK_1380 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPK_1382 PF00873 AcrB/AcrD/AcrF family YPK_1384 PF00196 Bacterial regulatory proteins, luxR family YPK_1384 PF00072 Response regulator receiver domain YPK_1385 PF00037 4Fe-4S binding domain YPK_1385 PF12800 4Fe-4S binding domain YPK_1385 PF13187 4Fe-4S dicluster domain YPK_1386 PF03927 NapD protein YPK_1387 PF01568 Molydopterin dinucleotide binding domain YPK_1387 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPK_1387 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_1387 PF00384 Molybdopterin oxidoreductase YPK_1388 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPK_1389 PF03264 NapC/NirT cytochrome c family, N-terminal region YPK_1390 PF00293 NUDIX domain YPK_1391 PF03949 Malic enzyme, NAD binding domain YPK_1391 PF01515 Phosphate acetyl/butaryl transferase YPK_1391 PF00390 Malic enzyme, N-terminal domain YPK_1392 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPK_1393 PF01218 Coproporphyrinogen III oxidase YPK_1394 PF00583 Acetyltransferase (GNAT) family YPK_1396 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPK_1396 PF03212 Pertactin YPK_1396 PF13018 Extended Signal Peptide of Type V secretion system YPK_1396 PF03797 Autotransporter beta-domain YPK_1397 PF04076 Bacterial OB fold (BOF) protein YPK_1398 PF06572 Protein of unknown function (DUF1131) YPK_1399 PF04261 Dyp-type peroxidase family YPK_1400 PF00701 Dihydrodipicolinate synthetase family YPK_1401 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPK_1403 PF12468 Type III secretion system leucine rich repeat protein YPK_1404 PF00480 ROK family YPK_1405 PF04074 YhcH/YjgK/YiaL YPK_1406 PF01418 Helix-turn-helix domain, rpiR family YPK_1406 PF01380 SIS domain YPK_1407 PF07690 Major Facilitator Superfamily YPK_1409 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1410 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1411 PF00005 ABC transporter YPK_1412 PF00291 Pyridoxal-phosphate dependent enzyme YPK_1413 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_1413 PF12468 Type III secretion system leucine rich repeat protein YPK_1414 PF00072 Response regulator receiver domain YPK_1414 PF00486 Transcriptional regulatory protein, C terminal YPK_1415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_1415 PF00672 HAMP domain YPK_1415 PF00512 His Kinase A (phospho-acceptor) domain YPK_1417 PF00155 Aminotransferase class I and II YPK_1418 PF00557 Metallopeptidase family M24 YPK_1418 PF05195 Aminopeptidase P, N-terminal domain YPK_1420 PF00474 Sodium:solute symporter family YPK_1421 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_1421 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_1422 PF02687 FtsX-like permease family YPK_1422 PF00005 ABC transporter YPK_1422 PF12704 MacB-like periplasmic core domain YPK_1423 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_1424 PF00486 Transcriptional regulatory protein, C terminal YPK_1424 PF00072 Response regulator receiver domain YPK_1425 PF16527 Two-component sensor protein CpxA, periplasmic domain YPK_1425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_1425 PF00672 HAMP domain YPK_1425 PF00512 His Kinase A (phospho-acceptor) domain YPK_1426 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPK_1427 PF02896 PEP-utilising enzyme, TIM barrel domain YPK_1427 PF05524 PEP-utilising enzyme, N-terminal YPK_1427 PF00391 PEP-utilising enzyme, mobile domain YPK_1428 PF00381 PTS HPr component phosphorylation site YPK_1429 PF00291 Pyridoxal-phosphate dependent enzyme YPK_1431 PF04354 ZipA, C-terminal FtsZ-binding domain YPK_1432 PF12826 Helix-hairpin-helix motif YPK_1432 PF00533 BRCA1 C Terminus (BRCT) domain YPK_1432 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPK_1432 PF03120 NAD-dependent DNA ligase OB-fold domain YPK_1432 PF01653 NAD-dependent DNA ligase adenylation domain YPK_1433 PF12843 Putative quorum-sensing-regulated virulence factor YPK_1437 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPK_1438 PF07670 Nucleoside recognition YPK_1438 PF07662 Na+ dependent nucleoside transporter C-terminus YPK_1438 PF01773 Na+ dependent nucleoside transporter N-terminus YPK_1439 PF01566 Natural resistance-associated macrophage protein YPK_1441 PF00248 Aldo/keto reductase family YPK_1442 PF03466 LysR substrate binding domain YPK_1442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1444 PF02685 Glucokinase YPK_1445 PF07350 Protein of unknown function (DUF1479) YPK_1446 PF00155 Aminotransferase class I and II YPK_1447 PF01292 Prokaryotic cytochrome b561 YPK_1449 PF03783 Curli production assembly/transport component CsgG YPK_1451 PF05643 Putative bacterial lipoprotein (DUF799) YPK_1453 PF02613 Nitrate reductase delta subunit YPK_1454 PF04976 DMSO reductase anchor subunit (DmsC) YPK_1455 PF12800 4Fe-4S binding domain YPK_1455 PF13247 4Fe-4S dicluster domain YPK_1456 PF01568 Molydopterin dinucleotide binding domain YPK_1456 PF00384 Molybdopterin oxidoreductase YPK_1456 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_1459 PF05638 Type VI secretion system effector, Hcp YPK_1461 PF00005 ABC transporter YPK_1462 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1464 PF13406 Transglycosylase SLT domain YPK_1474 PF17871 AAA lid domain YPK_1474 PF07724 AAA domain (Cdc48 subfamily) YPK_1474 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_1474 PF00004 ATPase family associated with various cellular activities (AAA) YPK_1475 PF16970 Type-1 fimbrial protein, A YPK_1476 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_1476 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_1477 PF13954 PapC N-terminal domain YPK_1477 PF13953 PapC C-terminal domain YPK_1477 PF00577 Outer membrane usher protein YPK_1486 PF04717 Type VI secretion system, phage-baseplate injector YPK_1492 PF03831 PhnA domain YPK_1492 PF08274 PhnA Zinc-Ribbon YPK_1494 PF04011 LemA family YPK_1496 PF00005 ABC transporter YPK_1497 PF03379 CcmB protein YPK_1498 PF01578 Cytochrome C assembly protein YPK_1499 PF04995 Heme exporter protein D (CcmD) YPK_1500 PF03100 CcmE YPK_1501 PF01578 Cytochrome C assembly protein YPK_1501 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPK_1502 PF08534 Redoxin YPK_1503 PF03918 Cytochrome C biogenesis protein YPK_1504 PF03918 Cytochrome C biogenesis protein YPK_1505 PF04333 MlaA lipoprotein YPK_1506 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPK_1507 PF04175 Protein of unknown function (DUF406) YPK_1508 PF02803 Thiolase, C-terminal domain YPK_1508 PF00108 Thiolase, N-terminal domain YPK_1509 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPK_1509 PF00378 Enoyl-CoA hydratase/isomerase YPK_1509 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPK_1511 PF00300 Histidine phosphatase superfamily (branch 1) YPK_1512 PF01713 Smr domain YPK_1513 PF05175 Methyltransferase small domain YPK_1514 PF01264 Chorismate synthase YPK_1515 PF03411 Penicillin-insensitive murein endopeptidase YPK_1516 PF01925 Sulfite exporter TauE/SafE YPK_1517 PF04315 Elongation factor P hydroxylase YPK_1518 PF08891 YfcL protein YPK_1519 PF01266 FAD dependent oxidoreductase YPK_1519 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPK_1520 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_1520 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_1521 PF01177 Asp/Glu/Hydantoin racemase YPK_1522 PF00419 Fimbrial protein YPK_1524 PF00892 EamA-like transporter family YPK_1527 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_1527 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_1527 PF11890 Domain of unknown function (DUF3410) YPK_1528 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPK_1528 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPK_1529 PF01416 tRNA pseudouridine synthase YPK_1530 PF09335 SNARE associated Golgi protein YPK_1531 PF17848 Acetyl-coA carboxylase zinc finger domain YPK_1531 PF01039 Carboxyl transferase domain YPK_1532 PF08245 Mur ligase middle domain YPK_1532 PF02875 Mur ligase family, glutamate ligase domain YPK_1533 PF05036 Sporulation related domain YPK_1534 PF02674 Colicin V production protein YPK_1535 PF00156 Phosphoribosyl transferase domain YPK_1536 PF02441 Flavoprotein YPK_1538 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_1539 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1540 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1541 PF00005 ABC transporter YPK_1542 PF08338 Domain of unknown function (DUF1731) YPK_1542 PF01370 NAD dependent epimerase/dehydratase family YPK_1544 PF12850 Calcineurin-like phosphoesterase superfamily domain YPK_1545 PF00293 NUDIX domain YPK_1546 PF03611 PTS system sugar-specific permease component YPK_1548 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_1549 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_1549 PF00356 Bacterial regulatory proteins, lacI family YPK_1550 PF01515 Phosphate acetyl/butaryl transferase YPK_1550 PF07085 DRTGG domain YPK_1551 PF00871 Acetokinase family YPK_1552 PF04217 Protein of unknown function, DUF412 YPK_1553 PF03887 YfbU domain YPK_1554 PF13419 Haloacid dehalogenase-like hydrolase YPK_1555 PF02080 TrkA-C domain YPK_1555 PF03600 Citrate transporter YPK_1558 PF00155 Aminotransferase class I and II YPK_1559 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1559 PF03466 LysR substrate binding domain YPK_1560 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPK_1561 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPK_1562 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPK_1562 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPK_1564 PF10531 SLBB domain YPK_1564 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPK_1564 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPK_1565 PF00384 Molybdopterin oxidoreductase YPK_1565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_1565 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPK_1565 PF01568 Molydopterin dinucleotide binding domain YPK_1566 PF00146 NADH dehydrogenase YPK_1567 PF12838 4Fe-4S dicluster domain YPK_1568 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPK_1569 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPK_1570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPK_1570 PF00361 Proton-conducting membrane transporter YPK_1571 PF00361 Proton-conducting membrane transporter YPK_1572 PF00361 Proton-conducting membrane transporter YPK_1574 PF04074 YhcH/YjgK/YiaL YPK_1575 PF01202 Shikimate kinase YPK_1576 PF00106 short chain dehydrogenase YPK_1578 PF00356 Bacterial regulatory proteins, lacI family YPK_1579 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_1579 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_1580 PF07690 Major Facilitator Superfamily YPK_1581 PF03928 Haem-degrading YPK_1582 PF00920 Dehydratase family YPK_1585 PF05957 Bacterial protein of unknown function (DUF883) YPK_1588 PF00425 chorismate binding enzyme YPK_1589 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_1589 PF16582 Middle domain of thiamine pyrophosphate YPK_1589 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_1590 PF12697 Alpha/beta hydrolase family YPK_1591 PF00378 Enoyl-CoA hydratase/isomerase YPK_1592 PF13378 Enolase C-terminal domain-like YPK_1593 PF00501 AMP-binding enzyme YPK_1593 PF13193 AMP-binding enzyme C-terminal domain YPK_1594 PF02885 Glycosyl transferase family, helical bundle domain YPK_1595 PF07338 Protein of unknown function (DUF1471) YPK_1596 PF05971 RNA methyltransferase YPK_1597 PF08447 PAS fold YPK_1597 PF13426 PAS domain YPK_1597 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1598 PF00005 ABC transporter YPK_1599 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1600 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_1602 PF00210 Ferritin-like domain YPK_1603 PF13649 Methyltransferase domain YPK_1605 PF00892 EamA-like transporter family YPK_1606 PF13505 Outer membrane protein beta-barrel domain YPK_1610 PF00107 Zinc-binding dehydrogenase YPK_1610 PF08240 Alcohol dehydrogenase GroES-like domain YPK_1611 PF13407 Periplasmic binding protein domain YPK_1612 PF00005 ABC transporter YPK_1613 PF02653 Branched-chain amino acid transport system / permease component YPK_1614 PF00356 Bacterial regulatory proteins, lacI family YPK_1615 PF03466 LysR substrate binding domain YPK_1615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1616 PF00180 Isocitrate/isopropylmalate dehydrogenase YPK_1618 PF02028 BCCT, betaine/carnitine/choline family transporter YPK_1619 PF00355 Rieske [2Fe-2S] domain YPK_1619 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPK_1620 PF00970 Oxidoreductase FAD-binding domain YPK_1620 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_1620 PF00175 Oxidoreductase NAD-binding domain YPK_1621 PF17287 POTRA domain YPK_1621 PF08479 POTRA domain, ShlB-type YPK_1621 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_1622 PF04829 Pre-toxin domain with VENN motif YPK_1622 PF13018 Extended Signal Peptide of Type V secretion system YPK_1622 PF13332 Hemagglutinin repeat YPK_1622 PF05860 haemagglutination activity domain YPK_1624 PF01527 Transposase YPK_1625 PF05860 haemagglutination activity domain YPK_1625 PF13332 Hemagglutinin repeat YPK_1625 PF13018 Extended Signal Peptide of Type V secretion system YPK_1625 PF04829 Pre-toxin domain with VENN motif YPK_1628 PF01381 Helix-turn-helix YPK_1629 PF05860 haemagglutination activity domain YPK_1629 PF15526 Novel toxin 21 YPK_1629 PF04829 Pre-toxin domain with VENN motif YPK_1629 PF13332 Hemagglutinin repeat YPK_1629 PF05594 Haemagluttinin repeat YPK_1631 PF00005 ABC transporter YPK_1631 PF17912 MalK OB fold domain YPK_1632 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPK_1632 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPK_1632 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPK_1632 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPK_1633 PF00356 Bacterial regulatory proteins, lacI family YPK_1635 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1636 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1637 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPK_1641 PF00924 Mechanosensitive ion channel YPK_1644 PF01867 CRISPR associated protein Cas1 YPK_1646 PF09611 CRISPR-associated protein (Cas_Csy1) YPK_1647 PF09614 CRISPR-associated protein (Cas_Csy2) YPK_1648 PF09615 CRISPR-associated protein (Cas_Csy3) YPK_1649 PF09618 CRISPR-associated protein (Cas_Csy4) YPK_1650 PF00248 Aldo/keto reductase family YPK_1652 PF00083 Sugar (and other) transporter YPK_1654 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1654 PF03466 LysR substrate binding domain YPK_1655 PF03472 Autoinducer binding domain YPK_1655 PF00196 Bacterial regulatory proteins, luxR family YPK_1656 PF00765 Autoinducer synthase YPK_1658 PF00999 Sodium/hydrogen exchanger family YPK_1658 PF03471 Transporter associated domain YPK_1658 PF02080 TrkA-C domain YPK_1660 PF01757 Acyltransferase family YPK_1661 PF04349 Periplasmic glucan biosynthesis protein, MdoG YPK_1662 PF00535 Glycosyl transferase family 2 YPK_1663 PF07119 Protein of unknown function (DUF1375) YPK_1664 PF00854 POT family YPK_1665 PF03279 Bacterial lipid A biosynthesis acyltransferase YPK_1669 PF01594 AI-2E family transporter YPK_1671 PF00196 Bacterial regulatory proteins, luxR family YPK_1672 PF01266 FAD dependent oxidoreductase YPK_1673 PF13991 BssS protein family YPK_1674 PF06183 DinI-like family YPK_1675 PF01979 Amidohydrolase family YPK_1676 PF03992 Antibiotic biosynthesis monooxygenase YPK_1677 PF10150 Ribonuclease E/G family YPK_1677 PF12111 Polyribonucleotide phosphorylase C terminal YPK_1677 PF00575 S1 RNA binding domain YPK_1678 PF00849 RNA pseudouridylate synthase YPK_1678 PF01479 S4 domain YPK_1679 PF01797 Transposase IS200 like YPK_1680 PF02545 Maf-like protein YPK_1681 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPK_1682 PF01783 Ribosomal L32p protein family YPK_1683 PF02504 Fatty acid synthesis protein YPK_1684 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPK_1684 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPK_1685 PF00698 Acyl transferase domain YPK_1687 PF00550 Phosphopantetheine attachment site YPK_1688 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_1688 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_1689 PF01063 Amino-transferase class IV YPK_1690 PF02618 YceG-like family YPK_1691 PF02223 Thymidylate kinase YPK_1692 PF09115 DNA polymerase III, delta subunit, C terminal YPK_1693 PF01026 TatD related DNase YPK_1694 PF00367 phosphotransferase system, EIIB YPK_1694 PF02378 Phosphotransferase system, EIIC YPK_1695 PF08501 Shikimate dehydrogenase substrate binding domain YPK_1696 PF01230 HIT domain YPK_1697 PF07233 Protein of unknown function (DUF1425) YPK_1698 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPK_1698 PF13036 Peptidoglycan-synthase activator LpoB YPK_1699 PF01636 Phosphotransferase enzyme family YPK_1700 PF00933 Glycosyl hydrolase family 3 N terminal domain YPK_1701 PF05728 Uncharacterised protein family (UPF0227) YPK_1702 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_1705 PF05433 Glycine zipper 2TM domain YPK_1706 PF00271 Helicase conserved C-terminal domain YPK_1706 PF00270 DEAD/DEAH box helicase YPK_1706 PF03461 TRCF domain YPK_1706 PF17757 UvrB interaction domain YPK_1706 PF02559 CarD-like/TRCF domain YPK_1707 PF12704 MacB-like periplasmic core domain YPK_1707 PF02687 FtsX-like permease family YPK_1708 PF00005 ABC transporter YPK_1709 PF12704 MacB-like periplasmic core domain YPK_1709 PF02687 FtsX-like permease family YPK_1710 PF00480 ROK family YPK_1711 PF02146 Sir2 family YPK_1712 PF07687 Peptidase dimerisation domain YPK_1712 PF01546 Peptidase family M20/M25/M40 YPK_1713 PF08007 Cupin superfamily protein YPK_1714 PF08918 PhoQ Sensor YPK_1714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_1715 PF00072 Response regulator receiver domain YPK_1715 PF00486 Transcriptional regulatory protein, C terminal YPK_1718 PF00206 Lyase YPK_1718 PF08328 Adenylosuccinate lyase C-terminal YPK_1719 PF04356 Protein of unknown function (DUF489) YPK_1721 PF00293 NUDIX domain YPK_1722 PF00849 RNA pseudouridylate synthase YPK_1723 PF00180 Isocitrate/isopropylmalate dehydrogenase YPK_1724 PF00356 Bacterial regulatory proteins, lacI family YPK_1724 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_1726 PF08447 PAS fold YPK_1726 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1727 PF05368 NmrA-like family YPK_1728 PF01638 HxlR-like helix-turn-helix YPK_1730 PF00328 Histidine phosphatase superfamily (branch 2) YPK_1731 PF14001 YdfZ protein YPK_1733 PF01037 Lrp/AsnC ligand binding domain YPK_1733 PF13404 AsnC-type helix-turn-helix domain YPK_1735 PF10777 Inner membrane protein YlaC YPK_1737 PF08659 KR domain YPK_1737 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_1737 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_1737 PF16197 Ketoacyl-synthetase C-terminal extension YPK_1737 PF00550 Phosphopantetheine attachment site YPK_1737 PF14765 Polyketide synthase dehydratase YPK_1737 PF00107 Zinc-binding dehydrogenase YPK_1737 PF08240 Alcohol dehydrogenase GroES-like domain YPK_1737 PF00698 Acyl transferase domain YPK_1739 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPK_1739 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPK_1739 PF00703 Glycosyl hydrolases family 2 YPK_1739 PF16353 Domain of unknown function(DUF4981) YPK_1739 PF02929 Beta galactosidase small chain YPK_1740 PF00313 'Cold-shock' DNA-binding domain YPK_1741 PF10781 Dextransucrase DSRB YPK_1742 PF02203 Tar ligand binding domain homologue YPK_1742 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1742 PF00672 HAMP domain YPK_1743 PF02308 MgtC family YPK_1744 PF00690 Cation transporter/ATPase, N-terminus YPK_1744 PF00689 Cation transporting ATPase, C-terminus YPK_1745 PF05247 Flagellar transcriptional activator (FlhD) YPK_1746 PF05280 Flagellar transcriptional activator (FlhC) YPK_1747 PF01618 MotA/TolQ/ExbB proton channel family YPK_1748 PF00691 OmpA family YPK_1748 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPK_1749 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_1749 PF09078 CheY binding YPK_1749 PF02895 Signal transducing histidine kinase, homodimeric domain YPK_1749 PF01627 Hpt domain YPK_1749 PF01584 CheW-like domain YPK_1750 PF01584 CheW-like domain YPK_1753 PF02203 Tar ligand binding domain homologue YPK_1753 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1753 PF00672 HAMP domain YPK_1756 PF01739 CheR methyltransferase, SAM binding domain YPK_1756 PF03705 CheR methyltransferase, all-alpha domain YPK_1757 PF01339 CheB methylesterase YPK_1757 PF00072 Response regulator receiver domain YPK_1758 PF00072 Response regulator receiver domain YPK_1759 PF04344 Chemotaxis phosphatase, CheZ YPK_1760 PF01510 N-acetylmuramoyl-L-alanine amidase YPK_1761 PF13018 Extended Signal Peptide of Type V secretion system YPK_1761 PF05658 Head domain of trimeric autotransporter adhesin YPK_1761 PF05658 Head domain of trimeric autotransporter adhesin YPK_1761 PF05662 Coiled stalk of trimeric autotransporter adhesin YPK_1761 PF13018 Extended Signal Peptide of Type V secretion system YPK_1761 PF03895 YadA-like membrane anchor domain YPK_1761 PF05658 Head domain of trimeric autotransporter adhesin YPK_1761 PF03895 YadA-like membrane anchor domain YPK_1761 PF13018 Extended Signal Peptide of Type V secretion system YPK_1761 PF05662 Coiled stalk of trimeric autotransporter adhesin YPK_1761 PF05662 Coiled stalk of trimeric autotransporter adhesin YPK_1761 PF03895 YadA-like membrane anchor domain YPK_1764 PF01168 Alanine racemase, N-terminal domain YPK_1764 PF00842 Alanine racemase, C-terminal domain YPK_1772 PF07351 Protein of unknown function (DUF1480) YPK_1775 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_1775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_1779 PF02470 MlaD protein YPK_1780 PF04403 Paraquat-inducible protein A YPK_1781 PF13185 GAF domain YPK_1782 PF17516 ProQ C-terminal domain YPK_1782 PF04352 ProQ/FINO family YPK_1783 PF17804 Tail specific protease N-terminal domain YPK_1783 PF11818 C-terminal domain of tail specific protease (DUF3340) YPK_1783 PF00595 PDZ domain YPK_1783 PF03572 Peptidase family S41 YPK_1784 PF01435 Peptidase family M48 YPK_1786 PF00419 Fimbrial protein YPK_1787 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_1787 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_1788 PF00577 Outer membrane usher protein YPK_1788 PF13954 PapC N-terminal domain YPK_1788 PF13953 PapC C-terminal domain YPK_1790 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_1790 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_1791 PF07690 Major Facilitator Superfamily YPK_1792 PF14583 Oligogalacturonate lyase YPK_1793 PF01614 Bacterial transcriptional regulator YPK_1793 PF09339 IclR helix-turn-helix domain YPK_1794 PF01510 N-acetylmuramoyl-L-alanine amidase YPK_1796 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPK_1797 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPK_1798 PF01547 Bacterial extracellular solute-binding protein YPK_1799 PF17912 MalK OB fold domain YPK_1799 PF03459 TOBE domain YPK_1799 PF00005 ABC transporter YPK_1800 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1801 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1802 PF06917 Periplasmic pectate lyase YPK_1804 PF04962 KduI/IolB family YPK_1805 PF07883 Cupin domain YPK_1806 PF00872 Transposase, Mutator family YPK_1808 PF13419 Haloacid dehalogenase-like hydrolase YPK_1809 PF14002 YniB-like protein YPK_1812 PF00950 ABC 3 transport family YPK_1813 PF00950 ABC 3 transport family YPK_1814 PF00005 ABC transporter YPK_1815 PF01297 Zinc-uptake complex component A periplasmic YPK_1816 PF01464 Transglycosylase SLT domain YPK_1817 PF01914 MarC family integral membrane protein YPK_1819 PF13619 KTSC domain YPK_1820 PF02824 TGS domain YPK_1820 PF03129 Anticodon binding domain YPK_1820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPK_1820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPK_1821 PF05198 Translation initiation factor IF-3, N-terminal domain YPK_1821 PF00707 Translation initiation factor IF-3, C-terminal domain YPK_1822 PF01632 Ribosomal protein L35 YPK_1823 PF00453 Ribosomal protein L20 YPK_1824 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPK_1824 PF01409 tRNA synthetases class II core domain (F) YPK_1825 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPK_1825 PF03147 Ferredoxin-fold anticodon binding domain YPK_1825 PF01588 Putative tRNA binding domain YPK_1825 PF03483 B3/4 domain YPK_1825 PF03484 tRNA synthetase B5 domain YPK_1826 PF00216 Bacterial DNA-binding protein YPK_1828 PF01032 FecCD transport family YPK_1829 PF00255 Glutathione peroxidase YPK_1830 PF00005 ABC transporter YPK_1831 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPK_1832 PF00535 Glycosyl transferase family 2 YPK_1833 PF00551 Formyl transferase YPK_1833 PF02911 Formyl transferase, C-terminal domain YPK_1833 PF01370 NAD dependent epimerase/dehydratase family YPK_1834 PF01522 Polysaccharide deacetylase YPK_1835 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPK_1836 PF00892 EamA-like transporter family YPK_1838 PF00877 NlpC/P60 family YPK_1839 PF03099 Biotin/lipoate A/B protein ligase family YPK_1839 PF10437 Bacterial lipoate protein ligase C-terminus YPK_1840 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPK_1841 PF00793 DAHP synthetase I family YPK_1842 PF03618 Kinase/pyrophosphorylase YPK_1843 PF02896 PEP-utilising enzyme, TIM barrel domain YPK_1843 PF00391 PEP-utilising enzyme, mobile domain YPK_1843 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPK_1844 PF01594 AI-2E family transporter YPK_1845 PF13183 4Fe-4S dicluster domain YPK_1845 PF01565 FAD binding domain YPK_1845 PF02913 FAD linked oxidases, C-terminal domain YPK_1846 PF03061 Thioesterase superfamily YPK_1847 PF01521 Iron-sulphur cluster biosynthesis YPK_1848 PF01458 Uncharacterized protein family (UPF0051) YPK_1849 PF00005 ABC transporter YPK_1850 PF01458 Uncharacterized protein family (UPF0051) YPK_1851 PF00266 Aminotransferase class-V YPK_1852 PF02657 Fe-S metabolism associated domain YPK_1853 PF03734 L,D-transpeptidase catalytic domain YPK_1853 PF01476 LysM domain YPK_1853 PF17969 L,D-transpeptidase C-terminal domain YPK_1854 PF04728 Lipoprotein leucine-zipper YPK_1855 PF02887 Pyruvate kinase, alpha/beta domain YPK_1855 PF00224 Pyruvate kinase, barrel domain YPK_1856 PF01554 MatE YPK_1857 PF00677 Lumazine binding domain YPK_1859 PF07690 Major Facilitator Superfamily YPK_1860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1860 PF03466 LysR substrate binding domain YPK_1862 PF00356 Bacterial regulatory proteins, lacI family YPK_1863 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPK_1863 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPK_1864 PF00877 NlpC/P60 family YPK_1866 PF00462 Glutaredoxin YPK_1868 PF00929 Exonuclease YPK_1869 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPK_1870 PF14431 YwqJ-like deaminase YPK_1870 PF18807 Tripartite Tc toxins repeat YPK_1871 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPK_1872 PF16925 Tetracyclin repressor-like, C-terminal domain YPK_1872 PF00440 Bacterial regulatory proteins, tetR family YPK_1873 PF00884 Sulfatase YPK_1873 PF08019 Phosphoethanolamine transferase EptA/EptB YPK_1874 PF06945 Protein of unknown function (DUF1289) YPK_1875 PF00248 Aldo/keto reductase family YPK_1876 PF01047 MarR family YPK_1877 PF05433 Glycine zipper 2TM domain YPK_1878 PF03702 Anhydro-N-acetylmuramic acid kinase YPK_1879 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPK_1880 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPK_1880 PF01243 Pyridoxamine 5'-phosphate oxidase YPK_1881 PF01479 S4 domain YPK_1881 PF00579 tRNA synthetases class I (W and Y) YPK_1882 PF08543 Phosphomethylpyrimidine kinase YPK_1883 PF00043 Glutathione S-transferase, C-terminal domain YPK_1883 PF02798 Glutathione S-transferase, N-terminal domain YPK_1884 PF11656 YjbD family (DUF3811) YPK_1885 PF04893 Yip1 domain YPK_1886 PF00854 POT family YPK_1888 PF00005 ABC transporter YPK_1889 PF00005 ABC transporter YPK_1889 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_1890 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_1890 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1891 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1892 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_1893 PF00158 Sigma-54 interaction domain YPK_1893 PF02954 Bacterial regulatory protein, Fis family YPK_1894 PF04012 PspA/IM30 family YPK_1895 PF06667 Phage shock protein B YPK_1896 PF04024 PspC domain YPK_1898 PF04317 YcjX-like family, DUF463 YPK_1899 PF05128 Domain of unknown function (DUF697) YPK_1902 PF18024 Helix-turn-helix domain YPK_1902 PF00158 Sigma-54 interaction domain YPK_1903 PF08534 Redoxin YPK_1904 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPK_1904 PF13378 Enolase C-terminal domain-like YPK_1905 PF00246 Zinc carboxypeptidase YPK_1906 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_1907 PF01544 CorA-like Mg2+ transporter protein YPK_1910 PF07859 alpha/beta hydrolase fold YPK_1910 PF13472 GDSL-like Lipase/Acylhydrolase family YPK_1912 PF01171 PP-loop family YPK_1913 PF10371 Domain of unknown function YPK_1913 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPK_1913 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_1913 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPK_1913 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPK_1914 PF00893 Small Multidrug Resistance protein YPK_1915 PF02308 MgtC family YPK_1916 PF03891 Domain of unknown function (DUF333) YPK_1917 PF03724 META domain YPK_1918 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_1918 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_1919 PF11739 Dicarboxylate transport YPK_1920 PF13617 YnbE-like lipoprotein YPK_1921 PF07027 Protein of unknown function (DUF1318) YPK_1922 PF08125 Mannitol dehydrogenase C-terminal domain YPK_1922 PF01232 Mannitol dehydrogenase Rossmann domain YPK_1923 PF04198 Putative sugar-binding domain YPK_1923 PF00325 Bacterial regulatory proteins, crp family YPK_1924 PF02525 Flavodoxin-like fold YPK_1925 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPK_1925 PF00271 Helicase conserved C-terminal domain YPK_1925 PF04408 Helicase associated domain (HA2) YPK_1925 PF11898 Domain of unknown function (DUF3418) YPK_1925 PF00270 DEAD/DEAH box helicase YPK_1928 PF00089 Trypsin YPK_1930 PF01292 Prokaryotic cytochrome b561 YPK_1931 PF04264 YceI-like domain YPK_1935 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPK_1936 PF00672 HAMP domain YPK_1936 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_1936 PF00512 His Kinase A (phospho-acceptor) domain YPK_1937 PF00072 Response regulator receiver domain YPK_1937 PF00486 Transcriptional regulatory protein, C terminal YPK_1939 PF13520 Amino acid permease YPK_1940 PF07338 Protein of unknown function (DUF1471) YPK_1941 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPK_1941 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPK_1941 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPK_1942 PF02233 NAD(P) transhydrogenase beta subunit YPK_1943 PF00582 Universal stress protein family YPK_1944 PF13545 Crp-like helix-turn-helix domain YPK_1944 PF00027 Cyclic nucleotide-binding domain YPK_1945 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPK_1945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPK_1946 PF00245 Alkaline phosphatase YPK_1948 PF13419 Haloacid dehalogenase-like hydrolase YPK_1949 PF01842 ACT domain YPK_1950 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_1950 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_1950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_1955 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPK_1955 PF01048 Phosphorylase superfamily YPK_1956 PF00005 ABC transporter YPK_1957 PF00528 Binding-protein-dependent transport system inner membrane component YPK_1958 PF09084 NMT1/THI5 like YPK_1961 PF00005 ABC transporter YPK_1962 PF02653 Branched-chain amino acid transport system / permease component YPK_1963 PF13407 Periplasmic binding protein domain YPK_1965 PF00356 Bacterial regulatory proteins, lacI family YPK_1967 PF03553 Na+/H+ antiporter family YPK_1968 PF00155 Aminotransferase class I and II YPK_1970 PF13700 Domain of unknown function (DUF4158) YPK_1970 PF01526 Tn3 transposase DDE domain YPK_1972 PF00892 EamA-like transporter family YPK_1974 PF00171 Aldehyde dehydrogenase family YPK_1975 PF00158 Sigma-54 interaction domain YPK_1975 PF01590 GAF domain YPK_1975 PF02954 Bacterial regulatory protein, Fis family YPK_1976 PF00106 short chain dehydrogenase YPK_1977 PF06932 Protein of unknown function (DUF1283) YPK_1978 PF06649 Protein of unknown function (DUF1161) YPK_1979 PF00654 Voltage gated chloride channel YPK_1981 PF00480 ROK family YPK_1982 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_1982 PF03466 LysR substrate binding domain YPK_1983 PF07690 Major Facilitator Superfamily YPK_1984 PF05472 DNA replication terminus site-binding protein (Ter protein) YPK_1985 PF10415 Fumarase C C-terminus YPK_1985 PF00206 Lyase YPK_1986 PF01238 Phosphomannose isomerase type I YPK_1987 PF06097 Bacterial protein of unknown function (DUF945) YPK_1989 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPK_1989 PF02378 Phosphotransferase system, EIIC YPK_1989 PF00367 phosphotransferase system, EIIB YPK_1993 PF00962 Adenosine/AMP deaminase YPK_1994 PF13593 SBF-like CPA transporter family (DUF4137) YPK_1995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_1995 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_1996 PF12833 Helix-turn-helix domain YPK_1996 PF02311 AraC-like ligand binding domain YPK_1997 PF02653 Branched-chain amino acid transport system / permease component YPK_1998 PF00005 ABC transporter YPK_1999 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_2000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_2001 PF02610 L-arabinose isomerase YPK_2001 PF11762 L-arabinose isomerase C-terminal domain YPK_2002 PF03412 Peptidase C39 family YPK_2002 PF00005 ABC transporter YPK_2002 PF00664 ABC transporter transmembrane region YPK_2003 PF13533 Biotin-lipoyl like YPK_2004 PF03412 Peptidase C39 family YPK_2004 PF00664 ABC transporter transmembrane region YPK_2004 PF00005 ABC transporter YPK_2005 PF10754 Protein of unknown function (DUF2569) YPK_2006 PF02508 Rnf-Nqr subunit, membrane protein YPK_2007 PF04060 Putative Fe-S cluster YPK_2008 PF13375 RnfC Barrel sandwich hybrid domain YPK_2008 PF10531 SLBB domain YPK_2008 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPK_2008 PF13237 4Fe-4S dicluster domain YPK_2009 PF12833 Helix-turn-helix domain YPK_2009 PF06445 GyrI-like small molecule binding domain YPK_2010 PF03116 NQR2, RnfD, RnfE family YPK_2011 PF04205 FMN-binding domain YPK_2012 PF02508 Rnf-Nqr subunit, membrane protein YPK_2013 PF10576 Iron-sulfur binding domain of endonuclease III YPK_2013 PF00633 Helix-hairpin-helix motif YPK_2013 PF00730 HhH-GPD superfamily base excision DNA repair protein YPK_2014 PF01370 NAD dependent epimerase/dehydratase family YPK_2015 PF07690 Major Facilitator Superfamily YPK_2016 PF08206 Ribonuclease B OB domain YPK_2016 PF00575 S1 RNA binding domain YPK_2016 PF17876 Cold shock domain YPK_2016 PF00773 RNB domain YPK_2017 PF13722 5TM C-terminal transporter carbon starvation CstA YPK_2017 PF02554 Carbon starvation protein CstA YPK_2018 PF04328 Selenoprotein, putative YPK_2019 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPK_2021 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_2022 PF05433 Glycine zipper 2TM domain YPK_2023 PF01253 Translation initiation factor SUI1 YPK_2024 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPK_2026 PF18073 Rubredoxin metal binding domain YPK_2027 PF06305 Lipopolysaccharide assembly protein A domain YPK_2028 PF01569 PAP2 superfamily YPK_2029 PF00925 GTP cyclohydrolase II YPK_2030 PF00330 Aconitase family (aconitate hydratase) YPK_2030 PF00694 Aconitase C-terminal domain YPK_2032 PF03466 LysR substrate binding domain YPK_2032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2033 PF08272 Topoisomerase I zinc-ribbon-like YPK_2033 PF01396 Topoisomerase DNA binding C4 zinc finger YPK_2033 PF01131 DNA topoisomerase YPK_2033 PF01751 Toprim domain YPK_2035 PF10692 Protein of unknown function (DUF2498) YPK_2036 PF08496 Peptidase family S49 N-terminal YPK_2036 PF01343 Peptidase family S49 YPK_2037 PF00106 short chain dehydrogenase YPK_2038 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPK_2039 PF00849 RNA pseudouridylate synthase YPK_2039 PF01479 S4 domain YPK_2040 PF01300 Telomere recombination YPK_2041 PF02811 PHP domain YPK_2042 PF04715 Anthranilate synthase component I, N terminal region YPK_2042 PF00425 chorismate binding enzyme YPK_2043 PF00117 Glutamine amidotransferase class-I YPK_2044 PF00591 Glycosyl transferase family, a/b domain YPK_2044 PF02885 Glycosyl transferase family, helical bundle domain YPK_2045 PF00218 Indole-3-glycerol phosphate synthase YPK_2045 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPK_2046 PF00291 Pyridoxal-phosphate dependent enzyme YPK_2047 PF00290 Tryptophan synthase alpha chain YPK_2049 PF03922 OmpW family YPK_2053 PF04279 Intracellular septation protein A YPK_2054 PF03061 Thioesterase superfamily YPK_2055 PF03544 Gram-negative bacterial TonB protein C-terminal YPK_2057 PF03795 YCII-related domain YPK_2061 PF13505 Outer membrane protein beta-barrel domain YPK_2063 PF13091 PLD-like domain YPK_2063 PF13396 Phospholipase_D-nuclease N-terminal YPK_2064 PF04269 Protein of unknown function, DUF440 YPK_2066 PF00005 ABC transporter YPK_2066 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_2067 PF00005 ABC transporter YPK_2067 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_2068 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2068 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_2069 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_2071 PF01914 MarC family integral membrane protein YPK_2072 PF00465 Iron-containing alcohol dehydrogenase YPK_2072 PF00171 Aldehyde dehydrogenase family YPK_2073 PF00265 Thymidine kinase YPK_2074 PF00816 H-NS histone family YPK_2077 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPK_2077 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPK_2077 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPK_2078 PF00072 Response regulator receiver domain YPK_2079 PF02810 SEC-C motif YPK_2080 PF00551 Formyl transferase YPK_2080 PF01842 ACT domain YPK_2083 PF03466 LysR substrate binding domain YPK_2083 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2085 PF03372 Endonuclease/Exonuclease/phosphatase family YPK_2086 PF00293 NUDIX domain YPK_2087 PF07383 Protein of unknown function (DUF1496) YPK_2088 PF01131 DNA topoisomerase YPK_2088 PF01751 Toprim domain YPK_2089 PF02769 AIR synthase related protein, C-terminal domain YPK_2089 PF00586 AIR synthase related protein, N-terminal domain YPK_2090 PF00881 Nitroreductase family YPK_2091 PF01343 Peptidase family S49 YPK_2092 PF17763 Glutaminase/Asparaginase C-terminal domain YPK_2092 PF00710 Asparaginase, N-terminal YPK_2093 PF00857 Isochorismatase family YPK_2094 PF07023 Protein of unknown function (DUF1315) YPK_2095 PF01641 SelR domain YPK_2096 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPK_2096 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPK_2097 PF01263 Aldose 1-epimerase YPK_2098 PF06629 MltA-interacting protein MipA YPK_2100 PF08298 PrkA AAA domain YPK_2100 PF06798 PrkA serine protein kinase C-terminal domain YPK_2102 PF04285 Protein of unknown function (DUF444) YPK_2104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2104 PF03466 LysR substrate binding domain YPK_2105 PF05726 Pirin C-terminal cupin domain YPK_2105 PF02678 Pirin YPK_2106 PF07690 Major Facilitator Superfamily YPK_2107 PF01266 FAD dependent oxidoreductase YPK_2108 PF04293 SpoVR like protein YPK_2109 PF00392 Bacterial regulatory proteins, gntR family YPK_2109 PF07840 FadR C-terminal domain YPK_2110 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPK_2111 PF02600 Disulfide bond formation protein DsbB YPK_2115 PF00266 Aminotransferase class-V YPK_2117 PF03692 Putative zinc- or iron-chelating domain YPK_2118 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_2119 PF13406 Transglycosylase SLT domain YPK_2120 PF05166 YcgL domain YPK_2121 PF03775 Septum formation inhibitor MinC, C-terminal domain YPK_2121 PF05209 Septum formation inhibitor MinC, N-terminal domain YPK_2122 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPK_2123 PF03776 Septum formation topological specificity factor MinE YPK_2124 PF01612 3'-5' exonuclease YPK_2124 PF00570 HRDC domain YPK_2125 PF00501 AMP-binding enzyme YPK_2125 PF13193 AMP-binding enzyme C-terminal domain YPK_2126 PF03843 Outer membrane lipoprotein Slp family YPK_2127 PF00814 Glycoprotease family YPK_2128 PF13307 Helicase C-terminal domain YPK_2128 PF04851 Type III restriction enzyme, res subunit YPK_2129 PF01042 Endoribonuclease L-PSP YPK_2130 PF00893 Small Multidrug Resistance protein YPK_2131 PF00893 Small Multidrug Resistance protein YPK_2132 PF01081 KDPG and KHG aldolase YPK_2134 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPK_2134 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPK_2135 PF01380 SIS domain YPK_2135 PF01418 Helix-turn-helix domain, rpiR family YPK_2136 PF00224 Pyruvate kinase, barrel domain YPK_2136 PF02887 Pyruvate kinase, alpha/beta domain YPK_2138 PF03279 Bacterial lipid A biosynthesis acyltransferase YPK_2139 PF08525 Opacity-associated protein A N-terminal motif YPK_2139 PF01476 LysM domain YPK_2139 PF01551 Peptidase family M23 YPK_2140 PF01297 Zinc-uptake complex component A periplasmic YPK_2141 PF00005 ABC transporter YPK_2142 PF00950 ABC 3 transport family YPK_2143 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPK_2143 PF05491 RuvB C-terminal winged helix domain YPK_2143 PF17864 RuvB AAA lid domain YPK_2144 PF07499 RuvA, C-terminal domain YPK_2144 PF01330 RuvA N terminal domain YPK_2145 PF02075 Crossover junction endodeoxyribonuclease RuvC YPK_2146 PF01709 Transcriptional regulator YPK_2147 PF00293 NUDIX domain YPK_2148 PF01336 OB-fold nucleic acid binding domain YPK_2148 PF02938 GAD domain YPK_2148 PF00152 tRNA synthetases class II (D, K and N) YPK_2149 PF01904 Protein of unknown function DUF72 YPK_2150 PF01124 MAPEG family YPK_2151 PF13649 Methyltransferase domain YPK_2152 PF08003 Protein of unknown function (DUF1698) YPK_2153 PF03932 CutC family YPK_2154 PF06185 YecM protein YPK_2155 PF05746 DALR anticodon binding domain YPK_2155 PF03485 Arginyl tRNA synthetase N terminal domain YPK_2155 PF00750 tRNA synthetases class I (R) YPK_2156 PF13332 Hemagglutinin repeat YPK_2156 PF05860 haemagglutination activity domain YPK_2157 PF08479 POTRA domain, ShlB-type YPK_2157 PF17287 POTRA domain YPK_2157 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_2158 PF03023 Lipid II flippase MurJ YPK_2161 PF13302 Acetyltransferase (GNAT) domain YPK_2162 PF07690 Major Facilitator Superfamily YPK_2163 PF07273 Protein of unknown function (DUF1439) YPK_2164 PF02613 Nitrate reductase delta subunit YPK_2165 PF02811 PHP domain YPK_2166 PF00480 ROK family YPK_2166 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPK_2167 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_2168 PF00005 ABC transporter YPK_2168 PF08402 TOBE domain YPK_2169 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2170 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2172 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_2174 PF01740 STAS domain YPK_2174 PF00916 Sulfate permease family YPK_2175 PF00793 DAHP synthetase I family YPK_2176 PF13369 Transglutaminase-like superfamily YPK_2177 PF04247 Invasion gene expression up-regulator, SirB YPK_2178 PF13847 Methyltransferase domain YPK_2178 PF17827 PrmC N-terminal domain YPK_2179 PF00472 RF-1 domain YPK_2179 PF03462 PCRF domain YPK_2180 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPK_2180 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPK_2180 PF01488 Shikimate / quinate 5-dehydrogenase YPK_2181 PF03550 Outer membrane lipoprotein LolB YPK_2182 PF08544 GHMP kinases C terminal YPK_2182 PF00288 GHMP kinases N terminal domain YPK_2184 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPK_2184 PF14572 Phosphoribosyl synthetase-associated domain YPK_2185 PF10762 Protein of unknown function (DUF2583) YPK_2186 PF01195 Peptidyl-tRNA hydrolase YPK_2187 PF01926 50S ribosome-binding GTPase YPK_2187 PF06071 Protein of unknown function (DUF933) YPK_2191 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPK_2192 PF00072 Response regulator receiver domain YPK_2192 PF00486 Transcriptional regulatory protein, C terminal YPK_2193 PF00672 HAMP domain YPK_2193 PF00512 His Kinase A (phospho-acceptor) domain YPK_2193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_2203 PF08242 Methyltransferase domain YPK_2216 PF01370 NAD dependent epimerase/dehydratase family YPK_2217 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPK_2217 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPK_2219 PF05962 HutD YPK_2220 PF01979 Amidohydrolase family YPK_2221 PF00392 Bacterial regulatory proteins, gntR family YPK_2221 PF07702 UTRA domain YPK_2222 PF01979 Amidohydrolase family YPK_2224 PF00267 Gram-negative porin YPK_2225 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPK_2226 PF04996 Succinylarginine dihydrolase YPK_2227 PF00171 Aldehyde dehydrogenase family YPK_2228 PF04958 Arginine N-succinyltransferase beta subunit YPK_2229 PF00202 Aminotransferase class-III YPK_2231 PF00392 Bacterial regulatory proteins, gntR family YPK_2231 PF00155 Aminotransferase class I and II YPK_2232 PF00672 HAMP domain YPK_2232 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPK_2232 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_2232 PF07730 Histidine kinase YPK_2233 PF01699 Sodium/calcium exchanger protein YPK_2234 PF01797 Transposase IS200 like YPK_2235 PF02562 PhoH-like protein YPK_2238 PF13994 PgaD-like protein YPK_2239 PF00535 Glycosyl transferase family 2 YPK_2240 PF14883 Hypothetical glycosyl hydrolase family 13 YPK_2240 PF01522 Polysaccharide deacetylase YPK_2242 PF00557 Metallopeptidase family M24 YPK_2243 PF09313 Domain of unknown function (DUF1971) YPK_2243 PF03848 Tellurite resistance protein TehB YPK_2245 PF00578 AhpC/TSA family YPK_2246 PF00005 ABC transporter YPK_2246 PF02687 FtsX-like permease family YPK_2246 PF12704 MacB-like periplasmic core domain YPK_2248 PF12704 MacB-like periplasmic core domain YPK_2248 PF00005 ABC transporter YPK_2248 PF02687 FtsX-like permease family YPK_2251 PF10634 Fe2+ transport protein YPK_2252 PF03239 Iron permease FTR1 family YPK_2254 PF04960 Glutaminase YPK_2255 PF00455 DeoR C terminal sensor domain YPK_2255 PF08220 DeoR-like helix-turn-helix domain YPK_2256 PF00324 Amino acid permease YPK_2257 PF00155 Aminotransferase class I and II YPK_2258 PF02508 Rnf-Nqr subunit, membrane protein YPK_2260 PF04909 Amidohydrolase YPK_2265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2265 PF03466 LysR substrate binding domain YPK_2266 PF03328 HpcH/HpaI aldolase/citrate lyase family YPK_2267 PF01575 MaoC like domain YPK_2268 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPK_2268 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPK_2269 PF00072 Response regulator receiver domain YPK_2269 PF00196 Bacterial regulatory proteins, luxR family YPK_2273 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_2273 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_2274 PF13954 PapC N-terminal domain YPK_2274 PF13953 PapC C-terminal domain YPK_2274 PF00577 Outer membrane usher protein YPK_2276 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_2276 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_2277 PF08402 TOBE domain YPK_2277 PF00005 ABC transporter YPK_2278 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2279 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2281 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_2281 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_2283 PF00480 ROK family YPK_2291 PF00872 Transposase, Mutator family YPK_2292 PF00872 Transposase, Mutator family YPK_2300 PF04984 Phage tail sheath protein subtilisin-like domain YPK_2300 PF17482 Phage tail sheath C-terminal domain YPK_2306 PF04606 Ogr/Delta-like zinc finger YPK_2307 PF00589 Phage integrase family YPK_2307 PF02899 Phage integrase, N-terminal SAM-like domain YPK_2319 PF00929 Exonuclease YPK_2320 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPK_2321 PF00145 C-5 cytosine-specific DNA methylase YPK_2322 PF05840 Bacteriophage replication gene A protein (GPA) YPK_2347 PF04984 Phage tail sheath protein subtilisin-like domain YPK_2347 PF17482 Phage tail sheath C-terminal domain YPK_2353 PF04606 Ogr/Delta-like zinc finger YPK_2354 PF01066 CDP-alcohol phosphatidyltransferase YPK_2355 PF08459 UvrC Helix-hairpin-helix N-terminal YPK_2355 PF01541 GIY-YIG catalytic domain YPK_2355 PF02151 UvrB/uvrC motif YPK_2356 PF00072 Response regulator receiver domain YPK_2356 PF00196 Bacterial regulatory proteins, luxR family YPK_2357 PF10769 Protein of unknown function (DUF2594) YPK_2358 PF06942 GlpM protein YPK_2360 PF13505 Outer membrane protein beta-barrel domain YPK_2361 PF00324 Amino acid permease YPK_2362 PF01344 Kelch motif YPK_2363 PF03358 NADPH-dependent FMN reductase YPK_2364 PF04261 Dyp-type peroxidase family YPK_2365 PF09375 Imelysin YPK_2365 PF13473 Cupredoxin-like domain YPK_2366 PF03239 Iron permease FTR1 family YPK_2367 PF00474 Sodium:solute symporter family YPK_2369 PF00171 Aldehyde dehydrogenase family YPK_2369 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPK_2369 PF14850 DNA-binding domain of Proline dehydrogenase YPK_2369 PF01619 Proline dehydrogenase YPK_2377 PF00291 Pyridoxal-phosphate dependent enzyme YPK_2378 PF02899 Phage integrase, N-terminal SAM-like domain YPK_2380 PF04545 Sigma-70, region 4 YPK_2380 PF04539 Sigma-70 region 3 YPK_2380 PF04542 Sigma-70 region 2 YPK_2381 PF00669 Bacterial flagellin N-terminal helical region YPK_2381 PF08884 Flagellin D3 domain YPK_2381 PF00700 Bacterial flagellin C-terminal helical region YPK_2382 PF02465 Flagellar hook-associated protein 2 N-terminus YPK_2382 PF07195 Flagellar hook-associated protein 2 C-terminus YPK_2382 PF07196 Flagellin hook IN motif YPK_2383 PF02561 Flagellar protein FliS YPK_2384 PF05400 Flagellar protein FliT YPK_2385 PF12833 Helix-turn-helix domain YPK_2386 PF01966 HD domain YPK_2387 PF00730 HhH-GPD superfamily base excision DNA repair protein YPK_2390 PF02049 Flagellar hook-basal body complex protein FliE YPK_2391 PF01514 Secretory protein of YscJ/FliF family YPK_2391 PF08345 Flagellar M-ring protein C-terminal YPK_2392 PF14841 FliG middle domain YPK_2392 PF01706 FliG C-terminal domain YPK_2392 PF14842 FliG N-terminal domain YPK_2393 PF02108 Flagellar assembly protein FliH YPK_2394 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_2394 PF18269 T3SS EscN ATPase C-terminal domain YPK_2395 PF02050 Flagellar FliJ protein YPK_2396 PF02120 Flagellar hook-length control protein FliK YPK_2398 PF03748 Flagellar basal body-associated protein FliL YPK_2399 PF02154 Flagellar motor switch protein FliM YPK_2399 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPK_2400 PF16973 Flagellar motor switch protein FliN N-terminal YPK_2400 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPK_2401 PF04347 Flagellar biosynthesis protein, FliO YPK_2402 PF00813 FliP family YPK_2403 PF01313 Bacterial export proteins, family 3 YPK_2404 PF01311 Bacterial export proteins, family 1 YPK_2407 PF00294 pfkB family carbohydrate kinase YPK_2408 PF02653 Branched-chain amino acid transport system / permease component YPK_2409 PF00005 ABC transporter YPK_2410 PF13407 Periplasmic binding protein domain YPK_2411 PF02653 Branched-chain amino acid transport system / permease component YPK_2413 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_2414 PF04198 Putative sugar-binding domain YPK_2415 PF00669 Bacterial flagellin N-terminal helical region YPK_2416 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_2416 PF00460 Flagella basal body rod protein YPK_2417 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPK_2417 PF10135 Rod binding protein YPK_2418 PF02119 Flagellar P-ring protein YPK_2419 PF02107 Flagellar L-ring protein YPK_2420 PF00460 Flagella basal body rod protein YPK_2420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_2421 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_2421 PF00460 Flagella basal body rod protein YPK_2422 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_2422 PF00460 Flagella basal body rod protein YPK_2422 PF07559 Flagellar basal body protein FlaE YPK_2423 PF13860 FlgD Ig-like domain YPK_2423 PF13861 FlgD Tudor-like domain YPK_2423 PF03963 Flagellar hook capping protein - N-terminal region YPK_2424 PF00460 Flagella basal body rod protein YPK_2424 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_2425 PF00460 Flagella basal body rod protein YPK_2426 PF17656 FlgA N-terminal domain YPK_2426 PF13144 Chaperone for flagella basal body P-ring formation YPK_2427 PF04316 Anti-sigma-28 factor, FlgM YPK_2428 PF05130 FlgN protein YPK_2429 PF07979 Intimin C-type lectin domain YPK_2429 PF02369 Bacterial Ig-like domain (group 1) YPK_2429 PF11924 Inverse autotransporter, beta-domain YPK_2429 PF09134 Invasin, domain 3 YPK_2430 PF06366 Flagellar protein FlhE YPK_2431 PF00771 FHIPEP family YPK_2432 PF01312 FlhB HrpN YscU SpaS Family YPK_2435 PF10709 Protein of unknown function (DUF2511) YPK_2437 PF04234 CopC domain YPK_2438 PF00210 Ferritin-like domain YPK_2439 PF06440 DNA polymerase III, theta subunit YPK_2440 PF00561 alpha/beta hydrolase fold YPK_2442 PF00326 Prolyl oligopeptidase family YPK_2442 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPK_2443 PF13995 YebF-like protein YPK_2445 PF07130 YebG protein YPK_2446 PF00271 Helicase conserved C-terminal domain YPK_2446 PF03880 DbpA RNA binding domain YPK_2446 PF00270 DEAD/DEAH box helicase YPK_2447 PF02222 ATP-grasp domain YPK_2448 PF03701 Uncharacterised protein family (UPF0181) YPK_2449 PF04715 Anthranilate synthase component I, N terminal region YPK_2449 PF00425 chorismate binding enzyme YPK_2450 PF00293 NUDIX domain YPK_2451 PF03315 Serine dehydratase beta chain YPK_2451 PF03313 Serine dehydratase alpha chain YPK_2452 PF01613 Flavin reductase like domain YPK_2453 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPK_2453 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPK_2454 PF07690 Major Facilitator Superfamily YPK_2455 PF03328 HpcH/HpaI aldolase/citrate lyase family YPK_2456 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_2457 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPK_2458 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPK_2459 PF00171 Aldehyde dehydrogenase family YPK_2460 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_2461 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_2462 PF01047 MarR family YPK_2463 PF03741 Integral membrane protein TerC family YPK_2463 PF03471 Transporter associated domain YPK_2464 PF03610 PTS system fructose IIA component YPK_2464 PF03830 PTS system sorbose subfamily IIB component YPK_2465 PF03609 PTS system sorbose-specific iic component YPK_2466 PF03613 PTS system mannose/fructose/sorbose family IID component YPK_2467 PF06173 Protein of unknown function (DUF986) YPK_2468 PF02659 Putative manganese efflux pump YPK_2469 PF07715 TonB-dependent Receptor Plug Domain YPK_2469 PF00593 TonB dependent receptor YPK_2470 PF00990 Diguanylate cyclase, GGDEF domain YPK_2470 PF05231 MASE1 YPK_2470 PF13426 PAS domain YPK_2470 PF00563 EAL domain YPK_2470 PF08448 PAS fold YPK_2470 PF08447 PAS fold YPK_2472 PF13847 Methyltransferase domain YPK_2474 PF00313 'Cold-shock' DNA-binding domain YPK_2475 PF10736 Protein of unknown function (DUF2627) YPK_2476 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPK_2477 PF00324 Amino acid permease YPK_2480 PF13974 YebO-like protein YPK_2481 PF13996 YobH-like protein YPK_2482 PF10964 Protein of unknown function (DUF2766) YPK_2484 PF12833 Helix-turn-helix domain YPK_2487 PF00005 ABC transporter YPK_2487 PF00664 ABC transporter transmembrane region YPK_2490 PF06167 Glucose-regulated metallo-peptidase M90 YPK_2491 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_2491 PF00356 Bacterial regulatory proteins, lacI family YPK_2492 PF01306 LacY proton/sugar symporter YPK_2493 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPK_2493 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPK_2495 PF01648 4'-phosphopantetheinyl transferase superfamily YPK_2495 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPK_2496 PF03480 Bacterial extracellular solute-binding protein, family 7 YPK_2498 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPK_2499 PF00196 Bacterial regulatory proteins, luxR family YPK_2499 PF00072 Response regulator receiver domain YPK_2500 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPK_2502 PF01522 Polysaccharide deacetylase YPK_2504 PF01554 MatE YPK_2505 PF00764 Arginosuccinate synthase YPK_2506 PF01070 FMN-dependent dehydrogenase YPK_2508 PF13378 Enolase C-terminal domain-like YPK_2508 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPK_2509 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_2511 PF04134 Protein of unknown function, DUF393 YPK_2512 PF07690 Major Facilitator Superfamily YPK_2513 PF09134 Invasin, domain 3 YPK_2513 PF11924 Inverse autotransporter, beta-domain YPK_2513 PF02369 Bacterial Ig-like domain (group 1) YPK_2514 PF04363 Protein of unknown function (DUF496) YPK_2516 PF08411 Exonuclease C-terminal YPK_2516 PF00929 Exonuclease YPK_2517 PF13520 Amino acid permease YPK_2519 PF00465 Iron-containing alcohol dehydrogenase YPK_2520 PF00005 ABC transporter YPK_2521 PF02653 Branched-chain amino acid transport system / permease component YPK_2524 PF01370 NAD dependent epimerase/dehydratase family YPK_2525 PF08029 HisG, C-terminal domain YPK_2525 PF01634 ATP phosphoribosyltransferase YPK_2526 PF00815 Histidinol dehydrogenase YPK_2527 PF00155 Aminotransferase class I and II YPK_2528 PF00475 Imidazoleglycerol-phosphate dehydratase YPK_2529 PF00117 Glutamine amidotransferase class-I YPK_2530 PF00977 Histidine biosynthesis protein YPK_2531 PF00977 Histidine biosynthesis protein YPK_2532 PF01502 Phosphoribosyl-AMP cyclohydrolase YPK_2532 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPK_2533 PF01797 Transposase IS200 like YPK_2535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPK_2535 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPK_2536 PF00483 Nucleotidyl transferase YPK_2537 PF00483 Nucleotidyl transferase YPK_2538 PF04183 IucA / IucC family YPK_2538 PF06276 Ferric iron reductase FhuF-like transporter YPK_2539 PF00593 TonB dependent receptor YPK_2539 PF07715 TonB-dependent Receptor Plug Domain YPK_2539 PF07660 Secretin and TonB N terminus short domain YPK_2540 PF01497 Periplasmic binding protein YPK_2541 PF01032 FecCD transport family YPK_2542 PF01032 FecCD transport family YPK_2543 PF00005 ABC transporter YPK_2544 PF06276 Ferric iron reductase FhuF-like transporter YPK_2544 PF04183 IucA / IucC family YPK_2546 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPK_2547 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPK_2548 PF06276 Ferric iron reductase FhuF-like transporter YPK_2548 PF11575 FhuF 2Fe-2S C-terminal domain YPK_2549 PF00571 CBS domain YPK_2549 PF03741 Integral membrane protein TerC family YPK_2549 PF03471 Transporter associated domain YPK_2550 PF05170 AsmA family YPK_2551 PF00692 dUTPase YPK_2552 PF00485 Phosphoribulokinase / Uridine kinase family YPK_2553 PF10609 NUBPL iron-transfer P-loop NTPase YPK_2554 PF01588 Putative tRNA binding domain YPK_2554 PF09334 tRNA synthetases class I (M) YPK_2558 PF07690 Major Facilitator Superfamily YPK_2559 PF03788 LrgA family YPK_2560 PF04172 LrgB-like family YPK_2561 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPK_2561 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPK_2562 PF00390 Malic enzyme, N-terminal domain YPK_2562 PF03949 Malic enzyme, NAD binding domain YPK_2563 PF02698 DUF218 domain YPK_2564 PF02653 Branched-chain amino acid transport system / permease component YPK_2565 PF00005 ABC transporter YPK_2566 PF13407 Periplasmic binding protein domain YPK_2567 PF04235 Protein of unknown function (DUF418) YPK_2568 PF01227 GTP cyclohydrolase I YPK_2569 PF06779 Uncharacterised MFS-type transporter YbfB YPK_2570 PF03466 LysR substrate binding domain YPK_2570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2571 PF08240 Alcohol dehydrogenase GroES-like domain YPK_2571 PF00107 Zinc-binding dehydrogenase YPK_2572 PF00756 Putative esterase YPK_2575 PF13533 Biotin-lipoyl like YPK_2576 PF00005 ABC transporter YPK_2578 PF00994 Probable molybdopterin binding domain YPK_2578 PF03453 MoeA N-terminal region (domain I and II) YPK_2578 PF03454 MoeA C-terminal region (domain IV) YPK_2579 PF00899 ThiF family YPK_2581 PF12848 ABC transporter YPK_2581 PF00005 ABC transporter YPK_2602 PF00698 Acyl transferase domain YPK_2603 PF00550 Phosphopantetheine attachment site YPK_2606 PF00378 Enoyl-CoA hydratase/isomerase YPK_2608 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPK_2608 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPK_2610 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_2610 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_2611 PF07977 FabA-like domain YPK_2614 PF08031 Berberine and berberine like YPK_2614 PF01565 FAD binding domain YPK_2615 PF11647 Membrane Localization Domain YPK_2616 PF13610 DDE domain YPK_2618 PF04358 DsrC like protein YPK_2619 PF00708 Acylphosphatase YPK_2620 PF17785 PUA-like domain YPK_2620 PF10672 S-adenosylmethionine-dependent methyltransferase YPK_2621 PF08755 Hemimethylated DNA-binding protein YccV like YPK_2622 PF13380 CoA binding domain YPK_2623 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPK_2624 PF02142 MGS-like domain YPK_2625 PF12462 DNA helicase IV / RNA helicase N terminal YPK_2625 PF13361 UvrD-like helicase C-terminal domain YPK_2625 PF00580 UvrD/REP helicase N-terminal domain YPK_2626 PF03733 Inner membrane component domain YPK_2627 PF12805 FUSC-like inner membrane protein yccS YPK_2628 PF04993 TfoX N-terminal domain YPK_2628 PF04994 TfoX C-terminal domain YPK_2629 PF03846 Cell division inhibitor SulA YPK_2630 PF00691 OmpA family YPK_2630 PF01389 OmpA-like transmembrane domain YPK_2631 PF01797 Transposase IS200 like YPK_2632 PF06303 MatP N-terminal domain YPK_2632 PF17414 MatP C-terminal ribbon-helix-helix domain YPK_2633 PF05362 Lon protease (S16) C-terminal proteolytic domain YPK_2633 PF13654 AAA domain YPK_2634 PF07977 FabA-like domain YPK_2636 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_2636 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_2637 PF03886 ABC-type transport auxiliary lipoprotein component YPK_2638 PF02470 MlaD protein YPK_2639 PF04403 Paraquat-inducible protein A YPK_2640 PF00005 ABC transporter YPK_2640 PF16326 ABC transporter C-terminal domain YPK_2640 PF12848 ABC transporter YPK_2641 PF10672 S-adenosylmethionine-dependent methyltransferase YPK_2641 PF02926 THUMP domain YPK_2641 PF01170 Putative RNA methylase family UPF0020 YPK_2642 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_2642 PF03473 MOSC domain YPK_2642 PF03476 MOSC N-terminal beta barrel domain YPK_2643 PF07126 Cell-division protein ZapC YPK_2644 PF01180 Dihydroorotate dehydrogenase YPK_2645 PF01433 Peptidase family M1 domain YPK_2645 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPK_2645 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPK_2647 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPK_2647 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPK_2648 PF01336 OB-fold nucleic acid binding domain YPK_2648 PF00152 tRNA synthetases class II (D, K and N) YPK_2649 PF00267 Gram-negative porin YPK_2650 PF00155 Aminotransferase class I and II YPK_2652 PF00753 Metallo-beta-lactamase superfamily YPK_2653 PF05951 Bacterial protein of unknown function (DUF882) YPK_2654 PF01471 Putative peptidoglycan binding domain YPK_2654 PF03734 L,D-transpeptidase catalytic domain YPK_2655 PF04310 MukB N-terminal YPK_2655 PF16330 MukB hinge domain YPK_2656 PF04288 MukE-like family YPK_2657 PF17192 MukF middle domain YPK_2657 PF03882 MukF winged-helix domain YPK_2657 PF17193 MukF C-terminal domain YPK_2659 PF01636 Phosphotransferase enzyme family YPK_2660 PF02348 Cytidylyltransferase YPK_2661 PF03966 Trm112p-like protein YPK_2662 PF00313 'Cold-shock' DNA-binding domain YPK_2663 PF07063 Domain of unknown function (DUF1338) YPK_2664 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPK_2665 PF00005 ABC transporter YPK_2665 PF00664 ABC transporter transmembrane region YPK_2666 PF03772 Competence protein YPK_2666 PF00753 Metallo-beta-lactamase superfamily YPK_2667 PF00216 Bacterial DNA-binding protein YPK_2668 PF00575 S1 RNA binding domain YPK_2669 PF02224 Cytidylate kinase YPK_2670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPK_2671 PF00266 Aminotransferase class-V YPK_2674 PF00710 Asparaginase, N-terminal YPK_2674 PF17763 Glutaminase/Asparaginase C-terminal domain YPK_2675 PF18381 YcaO cyclodehydratase C-terminal domain YPK_2675 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPK_2676 PF01226 Formate/nitrite transporter YPK_2677 PF02901 Pyruvate formate lyase-like YPK_2677 PF01228 Glycine radical YPK_2679 PF04055 Radical SAM superfamily YPK_2680 PF07690 Major Facilitator Superfamily YPK_2681 PF02403 Seryl-tRNA synthetase N-terminal domain YPK_2681 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPK_2683 PF00004 ATPase family associated with various cellular activities (AAA) YPK_2683 PF12002 MgsA AAA+ ATPase C terminal YPK_2683 PF16193 AAA C-terminal domain YPK_2684 PF03548 Outer membrane lipoprotein carrier protein LolA YPK_2685 PF01580 FtsK/SpoIIIE family YPK_2685 PF09397 Ftsk gamma domain YPK_2685 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPK_2685 PF17854 FtsK alpha domain YPK_2686 PF01037 Lrp/AsnC ligand binding domain YPK_2687 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_2688 PF00005 ABC transporter YPK_2688 PF00664 ABC transporter transmembrane region YPK_2689 PF00664 ABC transporter transmembrane region YPK_2689 PF00005 ABC transporter YPK_2690 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPK_2691 PF01176 Translation initiation factor 1A / IF-1 YPK_2692 PF17871 AAA lid domain YPK_2692 PF07724 AAA domain (Cdc48 subfamily) YPK_2692 PF00004 ATPase family associated with various cellular activities (AAA) YPK_2692 PF02861 Clp amino terminal domain, pathogenicity island component YPK_2692 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_2693 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPK_2694 PF00313 'Cold-shock' DNA-binding domain YPK_2695 PF00005 ABC transporter YPK_2695 PF02687 FtsX-like permease family YPK_2695 PF12704 MacB-like periplasmic core domain YPK_2696 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_2697 PF04393 Protein of unknown function (DUF535) YPK_2699 PF11398 Protein of unknown function (DUF2813) YPK_2700 PF03956 Lysine exporter LysO YPK_2701 PF03063 Prismane/CO dehydrogenase family YPK_2702 PF00175 Oxidoreductase NAD-binding domain YPK_2702 PF00970 Oxidoreductase FAD-binding domain YPK_2702 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_2703 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_2703 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_2703 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_2705 PF01212 Beta-eliminating lyase YPK_2706 PF13460 NAD(P)H-binding YPK_2706 PF11066 Protein of unknown function (DUF2867) YPK_2707 PF01370 NAD dependent epimerase/dehydratase family YPK_2708 PF12883 Protein of unknown function (DUF3828) YPK_2709 PF01817 Chorismate mutase type II YPK_2710 PF00005 ABC transporter YPK_2711 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_2712 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2713 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2715 PF00892 EamA-like transporter family YPK_2716 PF10100 Staphylopine dehydrogenase YPK_2717 PF03059 Nicotianamine synthase protein YPK_2718 PF00005 ABC transporter YPK_2719 PF01032 FecCD transport family YPK_2724 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_2725 PF05958 tRNA (Uracil-5-)-methyltransferase YPK_2726 PF10767 Protein of unknown function (DUF2593) YPK_2727 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2728 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2729 PF08402 TOBE domain YPK_2729 PF00005 ABC transporter YPK_2730 PF13416 Bacterial extracellular solute-binding protein YPK_2731 PF10722 Putative bacterial sensory transduction regulator YPK_2732 PF07214 Protein of unknown function (DUF1418) YPK_2733 PF00462 Glutaredoxin YPK_2734 PF06826 Predicted Permease Membrane Region YPK_2734 PF02080 TrkA-C domain YPK_2736 PF01569 PAP2 superfamily YPK_2737 PF01791 DeoC/LacD family aldolase YPK_2738 PF08220 DeoR-like helix-turn-helix domain YPK_2738 PF00455 DeoR C terminal sensor domain YPK_2740 PF07943 Penicillin-binding protein 5, C-terminal domain YPK_2740 PF00768 D-alanyl-D-alanine carboxypeptidase YPK_2741 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2742 PF00005 ABC transporter YPK_2742 PF09383 NIL domain YPK_2743 PF03180 NLPA lipoprotein YPK_2747 PF13417 Glutathione S-transferase, N-terminal domain YPK_2747 PF00043 Glutathione S-transferase, C-terminal domain YPK_2748 PF00593 TonB dependent receptor YPK_2748 PF07715 TonB-dependent Receptor Plug Domain YPK_2749 PF00005 ABC transporter YPK_2750 PF01032 FecCD transport family YPK_2752 PF00324 Amino acid permease YPK_2754 PF03466 LysR substrate binding domain YPK_2754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2755 PF03601 Conserved hypothetical protein 698 YPK_2756 PF01261 Xylose isomerase-like TIM barrel YPK_2757 PF13953 PapC C-terminal domain YPK_2757 PF13954 PapC N-terminal domain YPK_2757 PF00577 Outer membrane usher protein YPK_2758 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_2758 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_2760 PF17550 Family of unknown function YPK_2761 PF00486 Transcriptional regulatory protein, C terminal YPK_2762 PF02378 Phosphotransferase system, EIIC YPK_2762 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_2763 PF00294 pfkB family carbohydrate kinase YPK_2764 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_2764 PF00381 PTS HPr component phosphorylation site YPK_2765 PF00293 NUDIX domain YPK_2766 PF02653 Branched-chain amino acid transport system / permease component YPK_2767 PF00005 ABC transporter YPK_2769 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPK_2770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_2770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_2771 PF00171 Aldehyde dehydrogenase family YPK_2773 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_2773 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_2773 PF01842 ACT domain YPK_2775 PF03692 Putative zinc- or iron-chelating domain YPK_2776 PF03222 Tryptophan/tyrosine permease family YPK_2777 PF01132 Elongation factor P (EF-P) OB domain YPK_2777 PF08207 Elongation factor P (EF-P) KOW-like domain YPK_2777 PF09285 Elongation factor P, C-terminal YPK_2778 PF03786 D-mannonate dehydratase (UxuA) YPK_2779 PF01232 Mannitol dehydrogenase Rossmann domain YPK_2779 PF08125 Mannitol dehydrogenase C-terminal domain YPK_2780 PF07729 FCD domain YPK_2780 PF00392 Bacterial regulatory proteins, gntR family YPK_2782 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPK_2782 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPK_2783 PF01569 PAP2 superfamily YPK_2784 PF00877 NlpC/P60 family YPK_2785 PF12792 CSS motif domain associated with EAL YPK_2785 PF00563 EAL domain YPK_2786 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_2787 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2788 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2788 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_2789 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_2789 PF00005 ABC transporter YPK_2790 PF13989 YejG-like protein YPK_2792 PF07690 Major Facilitator Superfamily YPK_2793 PF01479 S4 domain YPK_2793 PF00849 RNA pseudouridylate synthase YPK_2794 PF00271 Helicase conserved C-terminal domain YPK_2794 PF04851 Type III restriction enzyme, res subunit YPK_2795 PF01386 Ribosomal L25p family YPK_2796 PF04245 37-kD nucleoid-associated bacterial protein YPK_2797 PF07208 Protein of unknown function (DUF1414) YPK_2798 PF11893 Domain of unknown function (DUF3413) YPK_2798 PF00884 Sulfatase YPK_2800 PF05638 Type VI secretion system effector, Hcp YPK_2805 PF00232 Glycosyl hydrolase family 1 YPK_2807 PF01380 SIS domain YPK_2807 PF01418 Helix-turn-helix domain, rpiR family YPK_2811 PF04865 Baseplate J-like protein YPK_2819 PF17482 Phage tail sheath C-terminal domain YPK_2819 PF04984 Phage tail sheath protein subtilisin-like domain YPK_2823 PF01261 Xylose isomerase-like TIM barrel YPK_2824 PF08220 DeoR-like helix-turn-helix domain YPK_2824 PF00455 DeoR C terminal sensor domain YPK_2825 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_2826 PF17042 Nucleotide-binding C-terminal domain YPK_2826 PF07005 Sugar-binding N-terminal domain YPK_2827 PF06530 Phage antitermination protein Q YPK_2829 PF01381 Helix-turn-helix YPK_2829 PF00717 Peptidase S24-like YPK_2830 PF06183 DinI-like family YPK_2831 PF01278 Omptin family YPK_2833 PF02743 Cache domain YPK_2833 PF00672 HAMP domain YPK_2833 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_2834 PF12706 Beta-lactamase superfamily domain YPK_2836 PF00144 Beta-lactamase YPK_2839 PF00267 Gram-negative porin YPK_2841 PF07690 Major Facilitator Superfamily YPK_2842 PF16359 RcsD-ABL domain YPK_2842 PF01627 Hpt domain YPK_2842 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_2843 PF00196 Bacterial regulatory proteins, luxR family YPK_2843 PF00072 Response regulator receiver domain YPK_2844 PF09456 RcsC Alpha-Beta-Loop (ABL) YPK_2844 PF00512 His Kinase A (phospho-acceptor) domain YPK_2844 PF00072 Response regulator receiver domain YPK_2844 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_2846 PF03989 DNA gyrase C-terminal domain, beta-propeller YPK_2846 PF00521 DNA gyrase/topoisomerase IV, subunit A YPK_2848 PF02867 Ribonucleotide reductase, barrel domain YPK_2848 PF00317 Ribonucleotide reductase, all-alpha domain YPK_2848 PF03477 ATP cone domain YPK_2849 PF00268 Ribonucleotide reductase, small chain YPK_2850 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_2851 PF03974 Ecotin YPK_2852 PF00994 Probable molybdopterin binding domain YPK_2853 PF03222 Tryptophan/tyrosine permease family YPK_2854 PF07437 YfaZ precursor YPK_2855 PF00199 Catalase YPK_2855 PF06628 Catalase-related immune-responsive YPK_2856 PF13307 Helicase C-terminal domain YPK_2856 PF06733 DEAD_2 YPK_2857 PF00267 Gram-negative porin YPK_2858 PF00892 EamA-like transporter family YPK_2860 PF01276 Orn/Lys/Arg decarboxylase, major domain YPK_2860 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPK_2860 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPK_2861 PF13520 Amino acid permease YPK_2862 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2863 PF00005 ABC transporter YPK_2864 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2865 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPK_2866 PF00581 Rhodanese-like domain YPK_2869 PF00005 ABC transporter YPK_2870 PF00005 ABC transporter YPK_2871 PF02653 Branched-chain amino acid transport system / permease component YPK_2872 PF02653 Branched-chain amino acid transport system / permease component YPK_2873 PF13188 PAS domain YPK_2873 PF00158 Sigma-54 interaction domain YPK_2873 PF02954 Bacterial regulatory protein, Fis family YPK_2874 PF07308 Protein of unknown function (DUF1456) YPK_2875 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2876 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2878 PF00005 ABC transporter YPK_2879 PF04226 Transglycosylase associated protein YPK_2881 PF01844 HNH endonuclease YPK_2884 PF09330 D-lactate dehydrogenase, membrane binding YPK_2884 PF01565 FAD binding domain YPK_2885 PF00768 D-alanyl-D-alanine carboxypeptidase YPK_2887 PF01207 Dihydrouridine synthase (Dus) YPK_2889 PF01797 Transposase IS200 like YPK_2891 PF00271 Helicase conserved C-terminal domain YPK_2891 PF00270 DEAD/DEAH box helicase YPK_2896 PF13592 Winged helix-turn helix YPK_2896 PF13358 DDE superfamily endonuclease YPK_2897 PF13592 Winged helix-turn helix YPK_2897 PF13358 DDE superfamily endonuclease YPK_2898 PF00270 DEAD/DEAH box helicase YPK_2898 PF00271 Helicase conserved C-terminal domain YPK_2899 PF09209 Tetracyclin repressor-like, C-terminal domain YPK_2899 PF00440 Bacterial regulatory proteins, tetR family YPK_2900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_2901 PF00005 ABC transporter YPK_2905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2905 PF03466 LysR substrate binding domain YPK_2906 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPK_2907 PF00158 Sigma-54 interaction domain YPK_2907 PF00072 Response regulator receiver domain YPK_2907 PF02954 Bacterial regulatory protein, Fis family YPK_2908 PF00512 His Kinase A (phospho-acceptor) domain YPK_2908 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_2909 PF13801 Heavy-metal resistance YPK_2910 PF03825 Nucleoside H+ symporter YPK_2911 PF01048 Phosphorylase superfamily YPK_2913 PF03466 LysR substrate binding domain YPK_2913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2914 PF02028 BCCT, betaine/carnitine/choline family transporter YPK_2915 PF13977 BetI-type transcriptional repressor, C-terminal YPK_2915 PF00440 Bacterial regulatory proteins, tetR family YPK_2916 PF00171 Aldehyde dehydrogenase family YPK_2917 PF00732 GMC oxidoreductase YPK_2917 PF05199 GMC oxidoreductase YPK_2918 PF01027 Inhibitor of apoptosis-promoting Bax1 YPK_2919 PF02391 MoaE protein YPK_2920 PF02597 ThiS family YPK_2921 PF01967 MoaC family YPK_2922 PF04055 Radical SAM superfamily YPK_2922 PF06463 Molybdenum Cofactor Synthesis C YPK_2924 PF01933 Uncharacterised protein family UPF0052 YPK_2925 PF09905 DNA-binding protein VF530 YPK_2926 PF12344 Ultra-violet resistance protein B YPK_2926 PF17757 UvrB interaction domain YPK_2926 PF02151 UvrB/uvrC motif YPK_2926 PF00271 Helicase conserved C-terminal domain YPK_2926 PF04851 Type III restriction enzyme, res subunit YPK_2929 PF08241 Methyltransferase domain YPK_2930 PF00155 Aminotransferase class I and II YPK_2931 PF04055 Radical SAM superfamily YPK_2931 PF06968 Biotin and Thiamin Synthesis associated domain YPK_2932 PF00202 Aminotransferase class-III YPK_2933 PF10282 Lactonase, 7-bladed beta-propeller YPK_2935 PF03459 TOBE domain YPK_2935 PF00005 ABC transporter YPK_2936 PF00528 Binding-protein-dependent transport system inner membrane component YPK_2938 PF10766 Multidrug efflux pump-associated protein AcrZ YPK_2939 PF03459 TOBE domain YPK_2939 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_2940 PF00005 ABC transporter YPK_2943 PF16363 GDP-mannose 4,6 dehydratase YPK_2944 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPK_2944 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPK_2945 PF00288 GHMP kinases N terminal domain YPK_2945 PF08544 GHMP kinases C terminal YPK_2945 PF10509 Galactokinase galactose-binding signature YPK_2946 PF01263 Aldose 1-epimerase YPK_2948 PF00300 Histidine phosphatase superfamily (branch 1) YPK_2949 PF00793 DAHP synthetase I family YPK_2951 PF01545 Cation efflux family YPK_2952 PF04973 Nicotinamide mononucleotide transporter YPK_2953 PF02445 Quinolinate synthetase A protein YPK_2954 PF16331 TolA binding protein trimerisation YPK_2954 PF13174 Tetratricopeptide repeat YPK_2955 PF00691 OmpA family YPK_2956 PF07676 WD40-like Beta Propeller Repeat YPK_2956 PF04052 TolB amino-terminal domain YPK_2957 PF06519 TolA C-terminal YPK_2957 PF06519 TolA C-terminal YPK_2958 PF02472 Biopolymer transport protein ExbD/TolR YPK_2959 PF01618 MotA/TolQ/ExbB proton channel family YPK_2960 PF03061 Thioesterase superfamily YPK_2961 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPK_2962 PF08173 Membrane bound YbgT-like protein YPK_2963 PF02322 Cytochrome bd terminal oxidase subunit II YPK_2964 PF01654 Cytochrome bd terminal oxidase subunit I YPK_2965 PF02629 CoA binding domain YPK_2965 PF00549 CoA-ligase YPK_2966 PF00549 CoA-ligase YPK_2966 PF08442 ATP-grasp domain YPK_2967 PF02817 e3 binding domain YPK_2967 PF00364 Biotin-requiring enzyme YPK_2967 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPK_2968 PF02779 Transketolase, pyrimidine binding domain YPK_2968 PF16870 2-oxoglutarate dehydrogenase C-terminal YPK_2968 PF00676 Dehydrogenase E1 component YPK_2968 PF16078 2-oxoglutarate dehydrogenase N-terminus YPK_2969 PF13085 2Fe-2S iron-sulfur cluster binding domain YPK_2970 PF00890 FAD binding domain YPK_2970 PF02910 Fumarate reductase flavoprotein C-term YPK_2971 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPK_2972 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPK_2973 PF00285 Citrate synthase, C-terminal domain YPK_2974 PF01025 GrpE YPK_2975 PF01513 ATP-NAD kinase YPK_2976 PF02463 RecF/RecN/SMC N terminal domain YPK_2977 PF04355 SmpA / OmlA family YPK_2978 PF03658 RnfH family Ubiquitin YPK_2979 PF03364 Polyketide cyclase / dehydrase and lipid transport YPK_2980 PF01668 SmpB protein YPK_2981 PF00589 Phage integrase family YPK_2981 PF13356 Arm DNA-binding domain YPK_2982 PF01527 Transposase YPK_2983 PF13356 Arm DNA-binding domain YPK_2983 PF00589 Phage integrase family YPK_2986 PF12697 Alpha/beta hydrolase family YPK_2989 PF01402 Ribbon-helix-helix protein, copG family YPK_2990 PF00258 Flavodoxin YPK_2991 PF01475 Ferric uptake regulator family YPK_2992 PF02838 Glycosyl hydrolase family 20, domain 2 YPK_2992 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPK_2992 PF03173 Putative carbohydrate binding domain YPK_2992 PF00728 Glycosyl hydrolase family 20, catalytic domain YPK_2993 PF03573 outer membrane porin, OprD family YPK_2994 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPK_2994 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPK_2995 PF01797 Transposase IS200 like YPK_2996 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPK_2996 PF00367 phosphotransferase system, EIIB YPK_2996 PF02378 Phosphotransferase system, EIIC YPK_2997 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPK_2998 PF01979 Amidohydrolase family YPK_2999 PF00480 ROK family YPK_2999 PF01047 MarR family YPK_3000 PF13344 Haloacid dehalogenase-like hydrolase YPK_3001 PF00733 Asparagine synthase YPK_3001 PF13537 Glutamine amidotransferase domain YPK_3004 PF01494 FAD binding domain YPK_3005 PF01938 TRAM domain YPK_3005 PF00919 Uncharacterized protein family UPF0004 YPK_3005 PF04055 Radical SAM superfamily YPK_3006 PF02562 PhoH-like protein YPK_3007 PF02130 Uncharacterized protein family UPF0054 YPK_3008 PF00571 CBS domain YPK_3008 PF03471 Transporter associated domain YPK_3009 PF00795 Carbon-nitrogen hydrolase YPK_3010 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_3011 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3012 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3013 PF00005 ABC transporter YPK_3014 PF07295 Zinc-ribbon containing domain YPK_3015 PF00133 tRNA synthetases class I (I, L, M and V) YPK_3015 PF13603 Leucyl-tRNA synthetase, Domain 2 YPK_3015 PF08264 Anticodon-binding domain of tRNA YPK_3016 PF04390 Lipopolysaccharide-assembly YPK_3017 PF06144 DNA polymerase III, delta subunit YPK_3017 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPK_3018 PF01467 Cytidylyltransferase-like YPK_3020 PF02590 Predicted SPOUT methyltransferase YPK_3021 PF00905 Penicillin binding protein transpeptidase domain YPK_3021 PF03717 Penicillin-binding Protein dimerisation domain YPK_3022 PF01098 Cell cycle protein YPK_3023 PF03330 Lytic transglycolase YPK_3023 PF05036 Sporulation related domain YPK_3024 PF07943 Penicillin-binding protein 5, C-terminal domain YPK_3024 PF00768 D-alanyl-D-alanine carboxypeptidase YPK_3025 PF04359 Protein of unknown function (DUF493) YPK_3026 PF03099 Biotin/lipoate A/B protein ligase family YPK_3027 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPK_3027 PF04055 Radical SAM superfamily YPK_3028 PF02416 mttA/Hcf106 family YPK_3030 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPK_3031 PF00313 'Cold-shock' DNA-binding domain YPK_3032 PF00313 'Cold-shock' DNA-binding domain YPK_3033 PF00196 Bacterial regulatory proteins, luxR family YPK_3037 PF00664 ABC transporter transmembrane region YPK_3037 PF00005 ABC transporter YPK_3039 PF04962 KduI/IolB family YPK_3040 PF01261 Xylose isomerase-like TIM barrel YPK_3041 PF00294 pfkB family carbohydrate kinase YPK_3042 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_3042 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_3043 PF02653 Branched-chain amino acid transport system / permease component YPK_3044 PF00005 ABC transporter YPK_3045 PF13407 Periplasmic binding protein domain YPK_3046 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_3046 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_3048 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_3048 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_3048 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_3049 PF00171 Aldehyde dehydrogenase family YPK_3053 PF07703 Alpha-2-macroglobulin bait region domain YPK_3053 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPK_3053 PF17962 Bacterial macroglobulin domain 6 YPK_3053 PF01835 MG2 domain YPK_3053 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPK_3053 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPK_3053 PF00207 Alpha-2-macroglobulin family YPK_3054 PF00912 Transglycosylase YPK_3054 PF06832 Penicillin-Binding Protein C-terminus Family YPK_3054 PF00905 Penicillin binding protein transpeptidase domain YPK_3055 PF13693 Winged helix-turn-helix DNA-binding YPK_3060 PF05638 Type VI secretion system effector, Hcp YPK_3064 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPK_3064 PF03797 Autotransporter beta-domain YPK_3064 PF13018 Extended Signal Peptide of Type V secretion system YPK_3064 PF03212 Pertactin YPK_3067 PF08007 Cupin superfamily protein YPK_3068 PF00872 Transposase, Mutator family YPK_3069 PF01479 S4 domain YPK_3069 PF00849 RNA pseudouridylate synthase YPK_3075 PF00248 Aldo/keto reductase family YPK_3076 PF00248 Aldo/keto reductase family YPK_3077 PF03466 LysR substrate binding domain YPK_3077 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_3080 PF00782 Dual specificity phosphatase, catalytic domain YPK_3081 PF12147 Putative methyltransferase YPK_3081 PF12146 Serine aminopeptidase, S33 YPK_3082 PF01553 Acyltransferase YPK_3084 PF01066 CDP-alcohol phosphatidyltransferase YPK_3091 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPK_3108 PF06183 DinI-like family YPK_3109 PF06183 DinI-like family YPK_3110 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPK_3122 PF04984 Phage tail sheath protein subtilisin-like domain YPK_3122 PF17482 Phage tail sheath C-terminal domain YPK_3128 PF00589 Phage integrase family YPK_3131 PF06755 CbtA_toxin of type IV toxin-antitoxin system YPK_3132 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YPK_3133 PF04002 RadC-like JAB domain YPK_3134 PF06067 Domain of unknown function (DUF932) YPK_3137 PF01926 50S ribosome-binding GTPase YPK_3141 PF00665 Integrase core domain YPK_3141 PF13333 Integrase core domain YPK_3141 PF13276 HTH-like domain YPK_3149 PF13356 Arm DNA-binding domain YPK_3149 PF14659 Phage integrase, N-terminal SAM-like domain YPK_3149 PF00589 Phage integrase family YPK_3150 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPK_3150 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPK_3152 PF01406 tRNA synthetases class I (C) catalytic domain YPK_3152 PF09190 DALR domain YPK_3153 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPK_3154 PF00149 Calcineurin-like phosphoesterase YPK_3155 PF00731 AIR carboxylase YPK_3156 PF02222 ATP-grasp domain YPK_3156 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPK_3158 PF00005 ABC transporter YPK_3159 PF13472 GDSL-like Lipase/Acylhydrolase family YPK_3160 PF00106 short chain dehydrogenase YPK_3161 PF00085 Thioredoxin YPK_3162 PF16200 C-terminal region of band_7 YPK_3162 PF01145 SPFH domain / Band 7 family YPK_3163 PF01957 NfeD-like C-terminal, partner-binding YPK_3164 PF13411 MerR HTH family regulatory protein YPK_3165 PF00403 Heavy-metal-associated domain YPK_3166 PF01963 TraB family YPK_3167 PF04073 Aminoacyl-tRNA editing domain YPK_3172 PF07690 Major Facilitator Superfamily YPK_3173 PF01797 Transposase IS200 like YPK_3174 PF07690 Major Facilitator Superfamily YPK_3175 PF00999 Sodium/hydrogen exchanger family YPK_3175 PF02254 TrkA-N domain YPK_3176 PF00294 pfkB family carbohydrate kinase YPK_3177 PF02706 Chain length determinant protein YPK_3178 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPK_3178 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPK_3178 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPK_3178 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPK_3179 PF01370 NAD dependent epimerase/dehydratase family YPK_3180 PF00535 Glycosyl transferase family 2 YPK_3181 PF01050 Mannose-6-phosphate isomerase YPK_3181 PF00483 Nucleotidyl transferase YPK_3182 PF01370 NAD dependent epimerase/dehydratase family YPK_3183 PF16363 GDP-mannose 4,6 dehydratase YPK_3184 PF00534 Glycosyl transferases group 1 YPK_3184 PF13439 Glycosyltransferase Family 4 YPK_3188 PF01370 NAD dependent epimerase/dehydratase family YPK_3189 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPK_3190 PF16363 GDP-mannose 4,6 dehydratase YPK_3191 PF00483 Nucleotidyl transferase YPK_3192 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_3192 PF00970 Oxidoreductase FAD-binding domain YPK_3192 PF00175 Oxidoreductase NAD-binding domain YPK_3193 PF00762 Ferrochelatase YPK_3194 PF05191 Adenylate kinase, active site lid YPK_3195 PF00183 Hsp90 protein YPK_3195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_3196 PF13662 Toprim domain YPK_3196 PF02132 RecR protein YPK_3197 PF02575 YbaB/EbfC DNA-binding family YPK_3198 PF12170 DNA polymerase III tau subunit V interacting with alpha YPK_3198 PF12169 DNA polymerase III subunits gamma and tau domain III YPK_3198 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPK_3199 PF00156 Phosphoribosyl transferase domain YPK_3203 PF10689 Protein of unknown function (DUF2496) YPK_3204 PF00924 Mechanosensitive ion channel YPK_3204 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPK_3204 PF12795 Mechanosensitive ion channel porin domain YPK_3205 PF02635 DsrE/DsrF-like family YPK_3206 PF08361 MAATS-type transcriptional repressor, C-terminal region YPK_3206 PF00440 Bacterial regulatory proteins, tetR family YPK_3207 PF00529 HlyD membrane-fusion protein of T1SS YPK_3207 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_3208 PF00873 AcrB/AcrD/AcrF family YPK_3209 PF01797 Transposase IS200 like YPK_3210 PF01197 Ribosomal protein L31 YPK_3211 PF00444 Ribosomal protein L36 YPK_3213 PF10757 Biofilm formation regulator YbaJ YPK_3214 PF05321 Haemolysin expression modulating protein YPK_3215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPK_3216 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPK_3219 PF00909 Ammonium Transporter Family YPK_3220 PF00543 Nitrogen regulatory protein P-II YPK_3221 PF00005 ABC transporter YPK_3221 PF00664 ABC transporter transmembrane region YPK_3222 PF00005 ABC transporter YPK_3222 PF00664 ABC transporter transmembrane region YPK_3223 PF13404 AsnC-type helix-turn-helix domain YPK_3223 PF01037 Lrp/AsnC ligand binding domain YPK_3224 PF00291 Pyridoxal-phosphate dependent enzyme YPK_3226 PF12793 Sugar transport-related sRNA regulator N-term YPK_3226 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_3227 PF06508 Queuosine biosynthesis protein QueC YPK_3230 PF13145 PPIC-type PPIASE domain YPK_3231 PF00216 Bacterial DNA-binding protein YPK_3232 PF00004 ATPase family associated with various cellular activities (AAA) YPK_3232 PF05362 Lon protease (S16) C-terminal proteolytic domain YPK_3232 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPK_3233 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_3233 PF07724 AAA domain (Cdc48 subfamily) YPK_3233 PF06689 ClpX C4-type zinc finger YPK_3234 PF00574 Clp protease YPK_3235 PF05698 Bacterial trigger factor protein (TF) C-terminus YPK_3235 PF05697 Bacterial trigger factor protein (TF) YPK_3235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_3237 PF01722 BolA-like protein YPK_3238 PF03923 Uncharacterized lipoprotein YPK_3238 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPK_3239 PF07690 Major Facilitator Superfamily YPK_3241 PF06481 COX Aromatic Rich Motif YPK_3241 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPK_3242 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPK_3243 PF00510 Cytochrome c oxidase subunit III YPK_3244 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPK_3245 PF01040 UbiA prenyltransferase family YPK_3246 PF07690 Major Facilitator Superfamily YPK_3247 PF04461 Protein of unknown function (DUF520) YPK_3248 PF02558 Ketopantoate reductase PanE/ApbA YPK_3248 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPK_3249 PF01965 DJ-1/PfpI family YPK_3250 PF02926 THUMP domain YPK_3250 PF02568 Thiamine biosynthesis protein (ThiI) YPK_3251 PF02609 Exonuclease VII small subunit YPK_3252 PF00348 Polyprenyl synthetase YPK_3253 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPK_3253 PF02780 Transketolase, C-terminal domain YPK_3253 PF02779 Transketolase, pyrimidine binding domain YPK_3254 PF04608 Phosphatidylglycerophosphatase A YPK_3255 PF00586 AIR synthase related protein, N-terminal domain YPK_3255 PF02769 AIR synthase related protein, C-terminal domain YPK_3256 PF01029 NusB family YPK_3257 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPK_3258 PF01872 RibD C-terminal domain YPK_3258 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPK_3259 PF03477 ATP cone domain YPK_3261 PF02355 Protein export membrane protein YPK_3261 PF07549 SecD/SecF GG Motif YPK_3262 PF07549 SecD/SecF GG Motif YPK_3262 PF13721 SecD export protein N-terminal TM region YPK_3262 PF02355 Protein export membrane protein YPK_3263 PF02699 Preprotein translocase subunit YPK_3264 PF01702 Queuine tRNA-ribosyltransferase YPK_3265 PF02547 Queuosine biosynthesis protein YPK_3266 PF04336 Acyl carrier protein phosphodiesterase YPK_3267 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPK_3267 PF00578 AhpC/TSA family YPK_3270 PF00106 short chain dehydrogenase YPK_3271 PF00128 Alpha amylase, catalytic domain YPK_3271 PF02903 Alpha amylase, N-terminal ig-like domain YPK_3272 PF00324 Amino acid permease YPK_3273 PF05525 Branched-chain amino acid transport protein YPK_3274 PF12849 PBP superfamily domain YPK_3275 PF11808 Phosphate regulon sensor protein PhoR YPK_3275 PF00512 His Kinase A (phospho-acceptor) domain YPK_3275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_3275 PF00989 PAS fold YPK_3276 PF00486 Transcriptional regulatory protein, C terminal YPK_3276 PF00072 Response regulator receiver domain YPK_3277 PF12320 Type 5 capsule protein repressor C-terminal domain YPK_3277 PF00149 Calcineurin-like phosphoesterase YPK_3278 PF13476 AAA domain YPK_3279 PF00480 ROK family YPK_3280 PF04381 Putative exonuclease, RdgC YPK_3281 PF06865 Pyrimidine/purine nucleoside phosphorylase YPK_3282 PF01202 Shikimate kinase YPK_3284 PF08241 Methyltransferase domain YPK_3286 PF07317 Flagellar regulator YcgR YPK_3286 PF07238 PilZ domain YPK_3287 PF00171 Aldehyde dehydrogenase family YPK_3288 PF01472 PUA domain YPK_3288 PF00696 Amino acid kinase family YPK_3289 PF07417 Sigma factor-binding transcriptional regulator Crl YPK_3291 PF00156 Phosphoribosyl transferase domain YPK_3295 PF07687 Peptidase dimerisation domain YPK_3295 PF01546 Peptidase family M20/M25/M40 YPK_3296 PF00817 impB/mucB/samB family YPK_3296 PF11799 impB/mucB/samB family C-terminal domain YPK_3296 PF11798 IMS family HHH motif YPK_3297 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_3299 PF02424 ApbE family YPK_3300 PF00970 Oxidoreductase FAD-binding domain YPK_3300 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_3300 PF00175 Oxidoreductase NAD-binding domain YPK_3301 PF02508 Rnf-Nqr subunit, membrane protein YPK_3302 PF02508 Rnf-Nqr subunit, membrane protein YPK_3303 PF04205 FMN-binding domain YPK_3304 PF03116 NQR2, RnfD, RnfE family YPK_3305 PF11973 NQRA C-terminal domain YPK_3305 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPK_3306 PF03734 L,D-transpeptidase catalytic domain YPK_3307 PF13230 Glutamine amidotransferases class-II YPK_3308 PF13580 SIS domain YPK_3309 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPK_3309 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPK_3309 PF09317 Domain of unknown function (DUF1974) YPK_3311 PF18254 HMW1 domain 2 YPK_3311 PF18071 HMW1C N-terminal YPK_3312 PF05860 haemagglutination activity domain YPK_3313 PF08479 POTRA domain, ShlB-type YPK_3313 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_3316 PF01797 Transposase IS200 like YPK_3317 PF01636 Phosphotransferase enzyme family YPK_3318 PF01008 Initiation factor 2 subunit family YPK_3319 PF03079 ARD/ARD' family YPK_3321 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_3322 PF00155 Aminotransferase class I and II YPK_3323 PF00795 Carbon-nitrogen hydrolase YPK_3324 PF01546 Peptidase family M20/M25/M40 YPK_3324 PF07687 Peptidase dimerisation domain YPK_3325 PF00266 Aminotransferase class-V YPK_3326 PF00005 ABC transporter YPK_3328 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3329 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_3332 PF01425 Amidase YPK_3334 PF07690 Major Facilitator Superfamily YPK_3335 PF03591 AzlC protein YPK_3336 PF05437 Branched-chain amino acid transport protein (AzlD) YPK_3337 PF01047 MarR family YPK_3338 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_3338 PF00529 HlyD membrane-fusion protein of T1SS YPK_3339 PF07690 Major Facilitator Superfamily YPK_3340 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPK_3340 PF00588 SpoU rRNA Methylase family YPK_3341 PF00085 Thioredoxin YPK_3343 PF13607 Succinyl-CoA ligase like flavodoxin domain YPK_3343 PF00583 Acetyltransferase (GNAT) family YPK_3343 PF13380 CoA binding domain YPK_3344 PF13091 PLD-like domain YPK_3345 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPK_3349 PF17871 AAA lid domain YPK_3349 PF07724 AAA domain (Cdc48 subfamily) YPK_3349 PF00004 ATPase family associated with various cellular activities (AAA) YPK_3349 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_3349 PF02861 Clp amino terminal domain, pathogenicity island component YPK_3351 PF01479 S4 domain YPK_3351 PF00849 RNA pseudouridylate synthase YPK_3352 PF13525 Outer membrane lipoprotein YPK_3353 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPK_3355 PF01817 Chorismate mutase type II YPK_3355 PF00800 Prephenate dehydratase YPK_3356 PF01817 Chorismate mutase type II YPK_3356 PF02153 Prephenate dehydrogenase YPK_3357 PF00793 DAHP synthetase I family YPK_3358 PF00072 Response regulator receiver domain YPK_3358 PF04397 LytTr DNA-binding domain YPK_3359 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPK_3360 PF04338 Protein of unknown function, DUF481 YPK_3361 PF01245 Ribosomal protein L19 YPK_3362 PF01746 tRNA (Guanine-1)-methyltransferase YPK_3363 PF05239 PRC-barrel domain YPK_3363 PF01782 RimM N-terminal domain YPK_3364 PF00886 Ribosomal protein S16 YPK_3365 PF00448 SRP54-type protein, GTPase domain YPK_3365 PF02978 Signal peptide binding domain YPK_3365 PF02881 SRP54-type protein, helical bundle domain YPK_3366 PF01578 Cytochrome C assembly protein YPK_3367 PF01595 Cyclin M transmembrane N-terminal domain YPK_3367 PF00571 CBS domain YPK_3367 PF03471 Transporter associated domain YPK_3368 PF02664 S-Ribosylhomocysteinase (LuxS) YPK_3369 PF04262 Glutamate-cysteine ligase YPK_3370 PF09335 SNARE associated Golgi protein YPK_3371 PF13419 Haloacid dehalogenase-like hydrolase YPK_3372 PF02599 Global regulator protein family YPK_3373 PF02272 DHHA1 domain YPK_3373 PF01411 tRNA synthetases class II (A) YPK_3373 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPK_3374 PF02631 RecX family YPK_3375 PF00154 recA bacterial DNA recombination protein YPK_3376 PF02464 Competence-damaged protein YPK_3377 PF07690 Major Facilitator Superfamily YPK_3381 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_3381 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_3382 PF02780 Transketolase, C-terminal domain YPK_3382 PF02779 Transketolase, pyrimidine binding domain YPK_3383 PF00456 Transketolase, thiamine diphosphate binding domain YPK_3384 PF02653 Branched-chain amino acid transport system / permease component YPK_3385 PF00005 ABC transporter YPK_3388 PF00141 Peroxidase YPK_3389 PF07361 Cytochrome b562 YPK_3390 PF01292 Prokaryotic cytochrome b561 YPK_3391 PF02613 Nitrate reductase delta subunit YPK_3392 PF04976 DMSO reductase anchor subunit (DmsC) YPK_3393 PF13247 4Fe-4S dicluster domain YPK_3393 PF12800 4Fe-4S binding domain YPK_3394 PF00384 Molybdopterin oxidoreductase YPK_3394 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_3394 PF01568 Molydopterin dinucleotide binding domain YPK_3395 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_3397 PF08220 DeoR-like helix-turn-helix domain YPK_3397 PF00455 DeoR C terminal sensor domain YPK_3399 PF00005 ABC transporter YPK_3400 PF02653 Branched-chain amino acid transport system / permease component YPK_3401 PF02653 Branched-chain amino acid transport system / permease component YPK_3402 PF01261 Xylose isomerase-like TIM barrel YPK_3403 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_3403 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_3404 PF05683 Fumarase C-terminus YPK_3404 PF05681 Fumarate hydratase (Fumerase) YPK_3406 PF00557 Metallopeptidase family M24 YPK_3409 PF00593 TonB dependent receptor YPK_3409 PF07715 TonB-dependent Receptor Plug Domain YPK_3411 PF03150 Di-haem cytochrome c peroxidase YPK_3411 PF00034 Cytochrome c YPK_3411 PF14376 Haem-binding domain YPK_3412 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_3415 PF01022 Bacterial regulatory protein, arsR family YPK_3416 PF02040 Arsenical pump membrane protein YPK_3417 PF13936 Helix-turn-helix domain YPK_3417 PF04198 Putative sugar-binding domain YPK_3418 PF02734 DAK2 domain YPK_3419 PF02733 Dak1 domain YPK_3421 PF00107 Zinc-binding dehydrogenase YPK_3421 PF08240 Alcohol dehydrogenase GroES-like domain YPK_3422 PF02502 Ribose/Galactose Isomerase YPK_3424 PF05188 MutS domain II YPK_3424 PF00488 MutS domain V YPK_3424 PF05190 MutS family domain IV YPK_3424 PF05192 MutS domain III YPK_3424 PF01624 MutS domain I YPK_3425 PF00140 Sigma-70 factor, region 1.2 YPK_3425 PF04542 Sigma-70 region 2 YPK_3425 PF04539 Sigma-70 region 3 YPK_3425 PF04545 Sigma-70, region 4 YPK_3426 PF01476 LysM domain YPK_3426 PF01551 Peptidase family M23 YPK_3428 PF01975 Survival protein SurE YPK_3429 PF01142 tRNA pseudouridine synthase D (TruD) YPK_3430 PF02542 YgbB family YPK_3431 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPK_3432 PF04977 Septum formation initiator YPK_3433 PF12084 Protein of unknown function (DUF3561) YPK_3435 PF00009 Elongation factor Tu GTP binding domain YPK_3436 PF01507 Phosphoadenosine phosphosulfate reductase family YPK_3437 PF10414 Sirohaem synthase dimerisation region YPK_3437 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPK_3437 PF14824 Sirohaem biosynthesis protein central YPK_3440 PF01507 Phosphoadenosine phosphosulfate reductase family YPK_3441 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPK_3441 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPK_3442 PF00175 Oxidoreductase NAD-binding domain YPK_3442 PF00667 FAD binding domain YPK_3442 PF00258 Flavodoxin YPK_3443 PF01242 6-pyruvoyl tetrahydropterin synthase YPK_3444 PF04055 Radical SAM superfamily YPK_3445 PF00080 Copper/zinc superoxide dismutase (SODC) YPK_3446 PF00113 Enolase, C-terminal TIM barrel domain YPK_3446 PF03952 Enolase, N-terminal domain YPK_3447 PF00117 Glutamine amidotransferase class-I YPK_3447 PF06418 CTP synthase N-terminus YPK_3448 PF03819 MazG nucleotide pyrophosphohydrolase domain YPK_3449 PF04607 Region found in RelA / SpoT proteins YPK_3449 PF13291 ACT domain YPK_3449 PF02824 TGS domain YPK_3450 PF05958 tRNA (Uracil-5-)-methyltransferase YPK_3450 PF01938 TRAM domain YPK_3451 PF00072 Response regulator receiver domain YPK_3451 PF01627 Hpt domain YPK_3451 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPK_3451 PF00512 His Kinase A (phospho-acceptor) domain YPK_3451 PF00672 HAMP domain YPK_3451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_3452 PF00595 PDZ domain YPK_3453 PF01966 HD domain YPK_3453 PF13286 Phosphohydrolase-associated domain YPK_3454 PF01048 Phosphorylase superfamily YPK_3455 PF01497 Periplasmic binding protein YPK_3456 PF03458 UPF0126 domain YPK_3457 PF01521 Iron-sulphur cluster biosynthesis YPK_3458 PF00654 Voltage gated chloride channel YPK_3459 PF00202 Aminotransferase class-III YPK_3460 PF01032 FecCD transport family YPK_3461 PF01497 Periplasmic binding protein YPK_3462 PF00005 ABC transporter YPK_3463 PF00912 Transglycosylase YPK_3463 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPK_3463 PF14814 Bifunctional transglycosylase second domain YPK_3463 PF00905 Penicillin binding protein transpeptidase domain YPK_3464 PF04408 Helicase associated domain (HA2) YPK_3464 PF00271 Helicase conserved C-terminal domain YPK_3464 PF00270 DEAD/DEAH box helicase YPK_3464 PF08482 ATP-dependent helicase C-terminal YPK_3466 PF02834 LigT like Phosphoesterase YPK_3467 PF17746 SfsA N-terminal OB domain YPK_3467 PF03749 Sugar fermentation stimulation protein RE domain YPK_3468 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPK_3469 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPK_3470 PF12627 Probable RNA and SrmB- binding site of polymerase A YPK_3470 PF12626 Polymerase A arginine-rich C-terminus YPK_3470 PF01743 Poly A polymerase head domain YPK_3471 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPK_3472 PF02548 Ketopantoate hydroxymethyltransferase YPK_3473 PF02569 Pantoate-beta-alanine ligase YPK_3474 PF02261 Aspartate decarboxylase YPK_3475 PF01522 Polysaccharide deacetylase YPK_3476 PF01061 ABC-2 type transporter YPK_3477 PF00005 ABC transporter YPK_3478 PF00484 Carbonic anhydrase YPK_3479 PF00156 Phosphoribosyl transferase domain YPK_3480 PF07731 Multicopper oxidase YPK_3480 PF00394 Multicopper oxidase YPK_3480 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPK_3480 PF07732 Multicopper oxidase YPK_3481 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPK_3482 PF17284 Spermidine synthase tetramerisation domain YPK_3483 PF02675 S-adenosylmethionine decarboxylase YPK_3485 PF00892 EamA-like transporter family YPK_3486 PF06062 Uncharacterised protein family (UPF0231) YPK_3487 PF11791 Aconitate B N-terminal domain YPK_3487 PF00330 Aconitase family (aconitate hydratase) YPK_3487 PF06434 Aconitate hydratase 2 N-terminus YPK_3488 PF01797 Transposase IS200 like YPK_3489 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_3489 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_3490 PF00364 Biotin-requiring enzyme YPK_3490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPK_3490 PF02817 e3 binding domain YPK_3491 PF00456 Transketolase, thiamine diphosphate binding domain YPK_3491 PF17831 Pyruvate dehydrogenase E1 component middle domain YPK_3492 PF00392 Bacterial regulatory proteins, gntR family YPK_3492 PF07729 FCD domain YPK_3494 PF00324 Amino acid permease YPK_3495 PF17113 Regulatory signalling modulator protein AmpE YPK_3496 PF01510 N-acetylmuramoyl-L-alanine amidase YPK_3497 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPK_3497 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPK_3498 PF07963 Prokaryotic N-terminal methylation motif YPK_3499 PF00437 Type II/IV secretion system protein YPK_3499 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPK_3500 PF00482 Type II secretion system (T2SS), protein F YPK_3501 PF00478 IMP dehydrogenase / GMP reductase domain YPK_3503 PF01121 Dephospho-CoA kinase YPK_3504 PF07072 Cell division protein YPK_3505 PF03884 DNA gyrase inhibitor YacG YPK_3506 PF01797 Transposase IS200 like YPK_3508 PF00293 NUDIX domain YPK_3509 PF07516 SecA Wing and Scaffold domain YPK_3509 PF01043 SecA preprotein cross-linking domain YPK_3509 PF02810 SEC-C motif YPK_3509 PF07517 SecA DEAD-like domain YPK_3510 PF06558 Secretion monitor precursor protein (SecM) YPK_3512 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPK_3513 PF00091 Tubulin/FtsZ family, GTPase domain YPK_3513 PF12327 FtsZ family, C-terminal domain YPK_3514 PF02491 SHS2 domain inserted in FTSA YPK_3515 PF03799 Cell division protein FtsQ YPK_3515 PF08478 POTRA domain, FtsQ-type YPK_3516 PF07478 D-ala D-ala ligase C-terminus YPK_3516 PF01820 D-ala D-ala ligase N-terminus YPK_3517 PF01225 Mur ligase family, catalytic domain YPK_3517 PF08245 Mur ligase middle domain YPK_3517 PF02875 Mur ligase family, glutamate ligase domain YPK_3518 PF03033 Glycosyltransferase family 28 N-terminal domain YPK_3518 PF04101 Glycosyltransferase family 28 C-terminal domain YPK_3519 PF01098 Cell cycle protein YPK_3520 PF08245 Mur ligase middle domain YPK_3520 PF02875 Mur ligase family, glutamate ligase domain YPK_3521 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPK_3521 PF00953 Glycosyl transferase family 4 YPK_3522 PF01225 Mur ligase family, catalytic domain YPK_3522 PF08245 Mur ligase middle domain YPK_3522 PF02875 Mur ligase family, glutamate ligase domain YPK_3523 PF08245 Mur ligase middle domain YPK_3523 PF02875 Mur ligase family, glutamate ligase domain YPK_3523 PF01225 Mur ligase family, catalytic domain YPK_3524 PF00905 Penicillin binding protein transpeptidase domain YPK_3524 PF03717 Penicillin-binding Protein dimerisation domain YPK_3525 PF04999 Cell division protein FtsL YPK_3526 PF01795 MraW methylase family YPK_3527 PF02381 MraZ protein, putative antitoxin-like YPK_3528 PF06610 L-alanine exporter YPK_3529 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_3529 PF00356 Bacterial regulatory proteins, lacI family YPK_3530 PF10369 Small subunit of acetolactate synthase YPK_3531 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_3531 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_3531 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_3532 PF00501 AMP-binding enzyme YPK_3533 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_3533 PF03466 LysR substrate binding domain YPK_3535 PF00682 HMGL-like YPK_3535 PF08502 LeuA allosteric (dimerisation) domain YPK_3536 PF00180 Isocitrate/isopropylmalate dehydrogenase YPK_3537 PF00330 Aconitase family (aconitate hydratase) YPK_3538 PF00694 Aconitase C-terminal domain YPK_3539 PF07690 Major Facilitator Superfamily YPK_3540 PF12793 Sugar transport-related sRNA regulator N-term YPK_3540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_3543 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3544 PF00005 ABC transporter YPK_3545 PF09335 SNARE associated Golgi protein YPK_3546 PF03104 DNA polymerase family B, exonuclease domain YPK_3546 PF00136 DNA polymerase family B YPK_3547 PF00271 Helicase conserved C-terminal domain YPK_3547 PF12137 RNA polymerase recycling family C-terminal YPK_3547 PF00176 SNF2 family N-terminal domain YPK_3547 PF18339 RapA N-terminal Tudor like domain 1 YPK_3547 PF18337 RapA N-terminal Tudor like domain YPK_3551 PF00691 OmpA family YPK_3551 PF05736 OprF membrane domain YPK_3558 PF04717 Type VI secretion system, phage-baseplate injector YPK_3559 PF00004 ATPase family associated with various cellular activities (AAA) YPK_3559 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_3559 PF17871 AAA lid domain YPK_3559 PF07724 AAA domain (Cdc48 subfamily) YPK_3568 PF00849 RNA pseudouridylate synthase YPK_3569 PF05099 Tellurite resistance protein TerB YPK_3569 PF00226 DnaJ domain YPK_3570 PF03968 OstA-like protein YPK_3570 PF04453 LPS transport system D YPK_3571 PF09312 SurA N-terminal domain YPK_3571 PF00639 PPIC-type PPIASE domain YPK_3572 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPK_3573 PF00398 Ribosomal RNA adenine dimethylase YPK_3574 PF04379 ApaG domain YPK_3575 PF00149 Calcineurin-like phosphoesterase YPK_3578 PF00186 Dihydrofolate reductase YPK_3579 PF12821 Threonine/Serine exporter, ThrE YPK_3580 PF06738 Putative threonine/serine exporter YPK_3581 PF01810 LysE type translocator YPK_3582 PF02142 MGS-like domain YPK_3582 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPK_3582 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPK_3583 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPK_3583 PF00117 Glutamine amidotransferase class-I YPK_3584 PF05173 Dihydrodipicolinate reductase, C-terminus YPK_3584 PF01113 Dihydrodipicolinate reductase, N-terminus YPK_3585 PF02401 LytB protein YPK_3586 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_3587 PF01252 Signal peptidase (SPase) II YPK_3588 PF08264 Anticodon-binding domain of tRNA YPK_3588 PF06827 Zinc finger found in FPG and IleRS YPK_3588 PF00133 tRNA synthetases class I (I, L, M and V) YPK_3589 PF06574 FAD synthetase YPK_3589 PF01687 Riboflavin kinase YPK_3590 PF01649 Ribosomal protein S20 YPK_3591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_3591 PF03466 LysR substrate binding domain YPK_3592 PF06965 Na+/H+ antiporter 1 YPK_3593 PF00684 DnaJ central domain YPK_3593 PF01556 DnaJ C terminal domain YPK_3593 PF00226 DnaJ domain YPK_3594 PF00012 Hsp70 protein YPK_3595 PF01184 GPR1/FUN34/yaaH family YPK_3597 PF07690 Major Facilitator Superfamily YPK_3598 PF00994 Probable molybdopterin binding domain YPK_3599 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPK_3600 PF03883 Peroxide stress protein YaaA YPK_3602 PF00291 Pyridoxal-phosphate dependent enzyme YPK_3602 PF14821 Threonine synthase N terminus YPK_3603 PF08544 GHMP kinases C terminal YPK_3603 PF00288 GHMP kinases N terminal domain YPK_3604 PF00696 Amino acid kinase family YPK_3604 PF01842 ACT domain YPK_3604 PF00742 Homoserine dehydrogenase YPK_3604 PF03447 Homoserine dehydrogenase, NAD binding domain YPK_3604 PF13840 ACT domain YPK_3606 PF00486 Transcriptional regulatory protein, C terminal YPK_3606 PF00072 Response regulator receiver domain YPK_3607 PF05981 CreA protein YPK_3609 PF12833 Helix-turn-helix domain YPK_3609 PF06445 GyrI-like small molecule binding domain YPK_3610 PF00300 Histidine phosphatase superfamily (branch 1) YPK_3611 PF01931 Protein of unknown function DUF84 YPK_3612 PF01371 Trp repressor protein YPK_3613 PF01464 Transglycosylase SLT domain YPK_3613 PF14718 Soluble lytic murein transglycosylase L domain YPK_3614 PF00690 Cation transporter/ATPase, N-terminus YPK_3614 PF00689 Cation transporting ATPase, C-terminus YPK_3616 PF17152 Periplasmic sensor domain YPK_3616 PF00990 Diguanylate cyclase, GGDEF domain YPK_3617 PF00691 OmpA family YPK_3618 PF00005 ABC transporter YPK_3618 PF12848 ABC transporter YPK_3620 PF13521 AAA domain YPK_3620 PF01381 Helix-turn-helix YPK_3621 PF18073 Rubredoxin metal binding domain YPK_3622 PF18429 Domain of unknown function (DUF5609) YPK_3623 PF10144 Bacterial virulence factor haemolysin YPK_3624 PF01048 Phosphorylase superfamily YPK_3625 PF01676 Metalloenzyme superfamily YPK_3626 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPK_3626 PF00591 Glycosyl transferase family, a/b domain YPK_3626 PF02885 Glycosyl transferase family, helical bundle domain YPK_3627 PF01791 DeoC/LacD family aldolase YPK_3628 PF01773 Na+ dependent nucleoside transporter N-terminus YPK_3628 PF07662 Na+ dependent nucleoside transporter C-terminus YPK_3628 PF07670 Nucleoside recognition YPK_3629 PF01026 TatD related DNase YPK_3630 PF01734 Patatin-like phospholipase YPK_3631 PF07043 Protein of unknown function (DUF1328) YPK_3632 PF04972 BON domain YPK_3633 PF16658 Class II release factor RF3, C-terminal domain YPK_3633 PF00009 Elongation factor Tu GTP binding domain YPK_3633 PF03144 Elongation factor Tu domain 2 YPK_3634 PF00583 Acetyltransferase (GNAT) family YPK_3635 PF03603 DNA polymerase III psi subunit YPK_3636 PF05175 Methyltransferase small domain YPK_3636 PF08468 Methyltransferase small domain N-terminal YPK_3637 PF07256 Protein of unknown function (DUF1435) YPK_3638 PF00990 Diguanylate cyclase, GGDEF domain YPK_3639 PF01095 Pectinesterase YPK_3642 PF00873 AcrB/AcrD/AcrF family YPK_3643 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_3647 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPK_3648 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_3648 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_3649 PF04198 Putative sugar-binding domain YPK_3649 PF00325 Bacterial regulatory proteins, crp family YPK_3650 PF00005 ABC transporter YPK_3651 PF02653 Branched-chain amino acid transport system / permease component YPK_3652 PF02653 Branched-chain amino acid transport system / permease component YPK_3653 PF13407 Periplasmic binding protein domain YPK_3654 PF01791 DeoC/LacD family aldolase YPK_3655 PF03992 Antibiotic biosynthesis monooxygenase YPK_3656 PF10696 Protein of unknown function (DUF2501) YPK_3657 PF00381 PTS HPr component phosphorylation site YPK_3657 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_3657 PF05524 PEP-utilising enzyme, N-terminal YPK_3657 PF02896 PEP-utilising enzyme, TIM barrel domain YPK_3657 PF00391 PEP-utilising enzyme, mobile domain YPK_3659 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_3660 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_3661 PF12833 Helix-turn-helix domain YPK_3663 PF05987 Bacterial protein of unknown function (DUF898) YPK_3665 PF12161 HsdM N-terminal domain YPK_3665 PF02384 N-6 DNA Methylase YPK_3666 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPK_3666 PF18766 SWI2/SNF2 ATPase YPK_3666 PF12008 Type I restriction and modification enzyme - subunit R C terminal YPK_3668 PF00589 Phage integrase family YPK_3668 PF13356 Arm DNA-binding domain YPK_3672 PF12161 HsdM N-terminal domain YPK_3672 PF02384 N-6 DNA Methylase YPK_3674 PF12008 Type I restriction and modification enzyme - subunit R C terminal YPK_3674 PF18766 SWI2/SNF2 ATPase YPK_3674 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPK_3676 PF00589 Phage integrase family YPK_3676 PF13356 Arm DNA-binding domain YPK_3677 PF03739 Lipopolysaccharide export system permease LptF/LptG YPK_3678 PF03739 Lipopolysaccharide export system permease LptF/LptG YPK_3679 PF02789 Cytosol aminopeptidase family, N-terminal domain YPK_3679 PF00883 Cytosol aminopeptidase family, catalytic domain YPK_3680 PF04364 DNA polymerase III chi subunit, HolC YPK_3681 PF10458 Valyl tRNA synthetase tRNA binding arm YPK_3681 PF08264 Anticodon-binding domain of tRNA YPK_3681 PF00133 tRNA synthetases class I (I, L, M and V) YPK_3682 PF00583 Acetyltransferase (GNAT) family YPK_3683 PF06877 Regulator of ribonuclease activity B YPK_3684 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPK_3684 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPK_3685 PF04074 YhcH/YjgK/YiaL YPK_3687 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3688 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_3688 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3689 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_3689 PF00005 ABC transporter YPK_3690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_3690 PF00005 ABC transporter YPK_3691 PF03477 ATP cone domain YPK_3691 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPK_3693 PF00392 Bacterial regulatory proteins, gntR family YPK_3693 PF07702 UTRA domain YPK_3694 PF06754 Phosphonate metabolism protein PhnG YPK_3695 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPK_3696 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPK_3697 PF06007 Phosphonate metabolism protein PhnJ YPK_3698 PF00005 ABC transporter YPK_3699 PF00005 ABC transporter YPK_3700 PF07969 Amidohydrolase family YPK_3702 PF12706 Beta-lactamase superfamily domain YPK_3703 PF13460 NAD(P)H-binding YPK_3706 PF00005 ABC transporter YPK_3706 PF17912 MalK OB fold domain YPK_3706 PF03459 TOBE domain YPK_3707 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3709 PF13416 Bacterial extracellular solute-binding protein YPK_3712 PF01541 GIY-YIG catalytic domain YPK_3713 PF13508 Acetyltransferase (GNAT) domain YPK_3717 PF02321 Outer membrane efflux protein YPK_3717 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPK_3718 PF00873 AcrB/AcrD/AcrF family YPK_3719 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_3719 PF00529 HlyD membrane-fusion protein of T1SS YPK_3720 PF00296 Luciferase-like monooxygenase YPK_3722 PF01381 Helix-turn-helix YPK_3724 PF00270 DEAD/DEAH box helicase YPK_3724 PF12343 Cold shock protein DEAD box A YPK_3724 PF00271 Helicase conserved C-terminal domain YPK_3724 PF03880 DbpA RNA binding domain YPK_3725 PF13181 Tetratricopeptide repeat YPK_3725 PF07719 Tetratricopeptide repeat YPK_3726 PF00013 KH domain YPK_3726 PF03725 3' exoribonuclease family, domain 2 YPK_3726 PF00575 S1 RNA binding domain YPK_3726 PF01138 3' exoribonuclease family, domain 1 YPK_3726 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPK_3727 PF00312 Ribosomal protein S15 YPK_3728 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPK_3728 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPK_3728 PF09157 Pseudouridine synthase II TruB, C-terminal YPK_3729 PF02033 Ribosome-binding factor A YPK_3730 PF11987 Translation-initiation factor 2 YPK_3730 PF08364 Bacterial translation initiation factor IF-2 associated region YPK_3730 PF03144 Elongation factor Tu domain 2 YPK_3730 PF00009 Elongation factor Tu GTP binding domain YPK_3730 PF04760 Translation initiation factor IF-2, N-terminal region YPK_3731 PF08529 NusA N-terminal domain YPK_3731 PF13184 NusA-like KH domain YPK_3731 PF00575 S1 RNA binding domain YPK_3732 PF02576 RimP N-terminal domain YPK_3732 PF17384 RimP C-terminal SH3 domain YPK_3733 PF03840 Preprotein translocase SecG subunit YPK_3734 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPK_3734 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPK_3734 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPK_3734 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPK_3735 PF00809 Pterin binding enzyme YPK_3736 PF01434 Peptidase family M41 YPK_3736 PF06480 FtsH Extracellular YPK_3736 PF00004 ATPase family associated with various cellular activities (AAA) YPK_3736 PF17862 AAA+ lid domain YPK_3737 PF01728 FtsJ-like methyltransferase YPK_3738 PF01985 CRS1 / YhbY (CRM) domain YPK_3739 PF03449 Transcription elongation factor, N-terminal YPK_3739 PF01272 Transcription elongation factor, GreA/GreB, C-term YPK_3740 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPK_3741 PF00486 Transcriptional regulatory protein, C terminal YPK_3741 PF00072 Response regulator receiver domain YPK_3742 PF00512 His Kinase A (phospho-acceptor) domain YPK_3742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_3742 PF00672 HAMP domain YPK_3743 PF01018 GTP1/OBG YPK_3743 PF01926 50S ribosome-binding GTPase YPK_3755 PF00892 EamA-like transporter family YPK_3756 PF01016 Ribosomal L27 protein YPK_3757 PF00829 Ribosomal prokaryotic L21 protein YPK_3758 PF00348 Polyprenyl synthetase YPK_3760 PF13693 Winged helix-turn-helix DNA-binding YPK_3761 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPK_3761 PF00056 lactate/malate dehydrogenase, NAD binding domain YPK_3762 PF02863 Arginine repressor, C-terminal domain YPK_3762 PF01316 Arginine repressor, DNA binding domain YPK_3765 PF08245 Mur ligase middle domain YPK_3765 PF01225 Mur ligase family, catalytic domain YPK_3765 PF02875 Mur ligase family, glutamate ligase domain YPK_3766 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPK_3767 PF00719 Inorganic pyrophosphatase YPK_3768 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPK_3769 PF04357 TamB, inner membrane protein subunit of TAM complex YPK_3770 PF01103 Surface antigen YPK_3770 PF07244 Surface antigen variable number repeat YPK_3770 PF17243 POTRA domain TamA domain 1 YPK_3771 PF01625 Peptide methionine sulfoxide reductase YPK_3772 PF03471 Transporter associated domain YPK_3772 PF00571 CBS domain YPK_3772 PF01595 Cyclin M transmembrane N-terminal domain YPK_3773 PF06526 Protein of unknown function (DUF1107) YPK_3774 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPK_3775 PF00459 Inositol monophosphatase family YPK_3776 PF02872 5'-nucleotidase, C-terminal domain YPK_3776 PF00149 Calcineurin-like phosphoesterase YPK_3777 PF04405 Domain of Unknown function (DUF542) YPK_3777 PF01814 Hemerythrin HHE cation binding domain YPK_3778 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_3778 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPK_3779 PF08525 Opacity-associated protein A N-terminal motif YPK_3779 PF04225 Opacity-associated protein A LysM-like domain YPK_3781 PF01281 Ribosomal protein L9, N-terminal domain YPK_3781 PF03948 Ribosomal protein L9, C-terminal domain YPK_3782 PF01084 Ribosomal protein S18 YPK_3783 PF00436 Single-strand binding protein family YPK_3784 PF01250 Ribosomal protein S6 YPK_3786 PF00326 Prolyl oligopeptidase family YPK_3787 PF07338 Protein of unknown function (DUF1471) YPK_3788 PF02770 Acyl-CoA dehydrogenase, middle domain YPK_3788 PF18158 Adaptive response protein AidB N-terminal domain YPK_3788 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPK_3790 PF00588 SpoU rRNA Methylase family YPK_3790 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPK_3791 PF00773 RNB domain YPK_3791 PF00575 S1 RNA binding domain YPK_3791 PF08206 Ribonuclease B OB domain YPK_3791 PF17876 Cold shock domain YPK_3791 PF08461 Ribonuclease R winged-helix domain YPK_3792 PF02082 Transcriptional regulator YPK_3793 PF00709 Adenylosuccinate synthetase YPK_3794 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPK_3795 PF01145 SPFH domain / Band 7 family YPK_3796 PF01145 SPFH domain / Band 7 family YPK_3796 PF12221 Bacterial membrane protein N terminal YPK_3797 PF16360 GTP-binding GTPase Middle Region YPK_3797 PF13167 GTP-binding GTPase N-terminal YPK_3797 PF01926 50S ribosome-binding GTPase YPK_3799 PF17209 Hfq protein YPK_3801 PF01119 DNA mismatch repair protein, C-terminal domain YPK_3801 PF08676 MutL C terminal dimerisation domain YPK_3802 PF01520 N-acetylmuramoyl-L-alanine amidase YPK_3803 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPK_3804 PF03853 YjeF-related protein N-terminus YPK_3804 PF01256 Carbohydrate kinase YPK_3805 PF08331 Domain of unknown function (DUF1730) YPK_3808 PF00929 Exonuclease YPK_3809 PF03193 RsgA GTPase YPK_3810 PF02666 Phosphatidylserine decarboxylase YPK_3811 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPK_3811 PF00924 Mechanosensitive ion channel YPK_3811 PF12795 Mechanosensitive ion channel porin domain YPK_3812 PF00152 tRNA synthetases class II (D, K and N) YPK_3813 PF02910 Fumarate reductase flavoprotein C-term YPK_3813 PF00890 FAD binding domain YPK_3814 PF13085 2Fe-2S iron-sulfur cluster binding domain YPK_3814 PF13183 4Fe-4S dicluster domain YPK_3815 PF02300 Fumarate reductase subunit C YPK_3816 PF02313 Fumarate reductase subunit D YPK_3817 PF00893 Small Multidrug Resistance protein YPK_3818 PF08207 Elongation factor P (EF-P) KOW-like domain YPK_3818 PF01132 Elongation factor P (EF-P) OB domain YPK_3818 PF09285 Elongation factor P, C-terminal YPK_3819 PF04055 Radical SAM superfamily YPK_3821 PF13698 Domain of unknown function (DUF4156) YPK_3822 PF00118 TCP-1/cpn60 chaperonin family YPK_3823 PF00166 Chaperonin 10 Kd subunit YPK_3824 PF04186 FxsA cytoplasmic membrane protein YPK_3825 PF10415 Fumarase C C-terminus YPK_3825 PF00206 Lyase YPK_3826 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPK_3827 PF03091 CutA1 divalent ion tolerance protein YPK_3828 PF11412 Disulphide bond corrector protein DsbC YPK_3828 PF02683 Cytochrome C biogenesis protein transmembrane region YPK_3829 PF01568 Molydopterin dinucleotide binding domain YPK_3829 PF00384 Molybdopterin oxidoreductase YPK_3829 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_3830 PF13247 4Fe-4S dicluster domain YPK_3830 PF12800 4Fe-4S binding domain YPK_3831 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_3831 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPK_3831 PF13247 4Fe-4S dicluster domain YPK_3838 PF03400 IS1 transposase YPK_3840 PF06379 L-rhamnose-proton symport protein (RhaT) YPK_3841 PF02311 AraC-like ligand binding domain YPK_3841 PF12833 Helix-turn-helix domain YPK_3842 PF02311 AraC-like ligand binding domain YPK_3842 PF12833 Helix-turn-helix domain YPK_3845 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_3845 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_3846 PF06134 L-rhamnose isomerase (RhaA) YPK_3847 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_3848 PF00465 Iron-containing alcohol dehydrogenase YPK_3849 PF05336 L-rhamnose mutarotase YPK_3850 PF00436 Single-strand binding protein family YPK_3851 PF17755 UvrA DNA-binding domain YPK_3851 PF00005 ABC transporter YPK_3851 PF17760 UvrA interaction domain YPK_3852 PF04237 YjbR YPK_3853 PF00155 Aminotransferase class I and II YPK_3854 PF01168 Alanine racemase, N-terminal domain YPK_3854 PF00842 Alanine racemase, C-terminal domain YPK_3855 PF00772 DnaB-like helicase N terminal domain YPK_3855 PF03796 DnaB-like helicase C terminal domain YPK_3856 PF00107 Zinc-binding dehydrogenase YPK_3856 PF08240 Alcohol dehydrogenase GroES-like domain YPK_3857 PF09583 Phage shock protein G (Phageshock_PspG) YPK_3858 PF01207 Dihydrouridine synthase (Dus) YPK_3859 PF01475 Ferric uptake regulator family YPK_3860 PF00717 Peptidase S24-like YPK_3860 PF01726 LexA DNA binding domain YPK_3861 PF01219 Prokaryotic diacylglycerol kinase YPK_3862 PF01553 Acyltransferase YPK_3863 PF01040 UbiA prenyltransferase family YPK_3864 PF04345 Chorismate lyase YPK_3865 PF12951 Passenger-associated-transport-repeat YPK_3866 PF08031 Berberine and berberine like YPK_3866 PF01565 FAD binding domain YPK_3869 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_3870 PF00577 Outer membrane usher protein YPK_3870 PF13954 PapC N-terminal domain YPK_3870 PF13953 PapC C-terminal domain YPK_3872 PF02342 TerD domain YPK_3873 PF02342 TerD domain YPK_3874 PF03741 Integral membrane protein TerC family YPK_3875 PF05099 Tellurite resistance protein TerB YPK_3876 PF02342 TerD domain YPK_3877 PF02342 TerD domain YPK_3881 PF15608 PELOTA RNA binding domain YPK_3881 PF11202 Phosphoribosyl transferase (PRTase) YPK_3885 PF04055 Radical SAM superfamily YPK_3886 PF06228 Haem utilisation ChuX/HutX YPK_3887 PF13460 NAD(P)H-binding YPK_3888 PF10636 Hemin uptake protein hemP YPK_3889 PF00593 TonB dependent receptor YPK_3889 PF07715 TonB-dependent Receptor Plug Domain YPK_3890 PF05171 Haemin-degrading HemS.ChuX domain YPK_3891 PF01497 Periplasmic binding protein YPK_3892 PF01032 FecCD transport family YPK_3893 PF00005 ABC transporter YPK_3894 PF01053 Cys/Met metabolism PLP-dependent enzyme YPK_3895 PF03222 Tryptophan/tyrosine permease family YPK_3896 PF03466 LysR substrate binding domain YPK_3896 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_3897 PF01206 Sulfurtransferase TusA YPK_3898 PF04143 Sulphur transport YPK_3899 PF01312 FlhB HrpN YscU SpaS Family YPK_3900 PF01311 Bacterial export proteins, family 1 YPK_3901 PF01313 Bacterial export proteins, family 3 YPK_3902 PF00813 FliP family YPK_3906 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_3906 PF18269 T3SS EscN ATPase C-terminal domain YPK_3907 PF00771 FHIPEP family YPK_3910 PF01514 Secretory protein of YscJ/FliF family YPK_3914 PF14525 AraC-binding-like domain YPK_3914 PF12833 Helix-turn-helix domain YPK_3918 PF00072 Response regulator receiver domain YPK_3918 PF00672 HAMP domain YPK_3918 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPK_3918 PF01627 Hpt domain YPK_3918 PF00512 His Kinase A (phospho-acceptor) domain YPK_3918 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_3919 PF00072 Response regulator receiver domain YPK_3919 PF00196 Bacterial regulatory proteins, luxR family YPK_3920 PF00375 Sodium:dicarboxylate symporter family YPK_3921 PF13193 AMP-binding enzyme C-terminal domain YPK_3921 PF00501 AMP-binding enzyme YPK_3921 PF16177 Acetyl-coenzyme A synthetase N-terminus YPK_3922 PF04341 Protein of unknown function, DUF485 YPK_3923 PF00474 Sodium:solute symporter family YPK_3925 PF13683 Integrase core domain YPK_3925 PF13276 HTH-like domain YPK_3926 PF01527 Transposase YPK_3929 PF12724 Flavodoxin domain YPK_3930 PF02386 Cation transport protein YPK_3931 PF09186 Domain of unknown function (DUF1949) YPK_3931 PF01205 Uncharacterized protein family UPF0029 YPK_3932 PF00557 Metallopeptidase family M24 YPK_3933 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPK_3933 PF00378 Enoyl-CoA hydratase/isomerase YPK_3933 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPK_3934 PF02803 Thiolase, C-terminal domain YPK_3934 PF00108 Thiolase, N-terminal domain YPK_3935 PF00970 Oxidoreductase FAD-binding domain YPK_3935 PF00175 Oxidoreductase NAD-binding domain YPK_3936 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPK_3937 PF02357 Transcription termination factor nusG YPK_3938 PF00490 Delta-aminolevulinic acid dehydratase YPK_3939 PF01026 TatD related DNase YPK_3940 PF00902 Sec-independent protein translocase protein (TatC) YPK_3942 PF02416 mttA/Hcf106 family YPK_3943 PF03109 ABC1 family YPK_3944 PF02036 SCP-2 sterol transfer family YPK_3945 PF01209 ubiE/COQ5 methyltransferase family YPK_3946 PF02646 RmuC family YPK_3947 PF09335 SNARE associated Golgi protein YPK_3948 PF13722 5TM C-terminal transporter carbon starvation CstA YPK_3948 PF02554 Carbon starvation protein CstA YPK_3950 PF01048 Phosphorylase superfamily YPK_3951 PF01738 Dienelactone hydrolase family YPK_3952 PF01717 Cobalamin-independent synthase, Catalytic domain YPK_3952 PF08267 Cobalamin-independent synthase, N-terminal domain YPK_3953 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_3953 PF03466 LysR substrate binding domain YPK_3954 PF00892 EamA-like transporter family YPK_3957 PF03547 Membrane transport protein YPK_3958 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_3959 PF00005 ABC transporter YPK_3959 PF17912 MalK OB fold domain YPK_3960 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3961 PF00528 Binding-protein-dependent transport system inner membrane component YPK_3962 PF13416 Bacterial extracellular solute-binding protein YPK_3970 PF00005 ABC transporter YPK_3971 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPK_3971 PF00005 ABC transporter YPK_3972 PF11862 Domain of unknown function (DUF3382) YPK_3972 PF02653 Branched-chain amino acid transport system / permease component YPK_3973 PF02653 Branched-chain amino acid transport system / permease component YPK_3974 PF13458 Periplasmic binding protein YPK_3975 PF12568 Acetyltransferase (GNAT) domain, PanZ YPK_3976 PF00140 Sigma-70 factor, region 1.2 YPK_3976 PF04542 Sigma-70 region 2 YPK_3976 PF04545 Sigma-70, region 4 YPK_3977 PF18075 FtsX extracellular domain YPK_3977 PF02687 FtsX-like permease family YPK_3978 PF00005 ABC transporter YPK_3979 PF00448 SRP54-type protein, GTPase domain YPK_3979 PF00448 SRP54-type protein, GTPase domain YPK_3979 PF02881 SRP54-type protein, helical bundle domain YPK_3979 PF02881 SRP54-type protein, helical bundle domain YPK_3981 PF06611 Protein of unknown function (DUF1145) YPK_3984 PF07947 YhhN family YPK_3985 PF00403 Heavy-metal-associated domain YPK_3986 PF01206 Sulfurtransferase TusA YPK_3987 PF02592 Putative vitamin uptake transporter YPK_3988 PF08786 DcrB YPK_3989 PF13183 4Fe-4S dicluster domain YPK_3989 PF02754 Cysteine-rich domain YPK_3990 PF00890 FAD binding domain YPK_3991 PF04324 BFD-like [2Fe-2S] binding domain YPK_3991 PF01266 FAD dependent oxidoreductase YPK_3992 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_3995 PF12146 Serine aminopeptidase, S33 YPK_3996 PF01810 LysE type translocator YPK_3997 PF01810 LysE type translocator YPK_3998 PF16124 RecQ zinc-binding YPK_3998 PF09382 RQC domain YPK_3998 PF00271 Helicase conserved C-terminal domain YPK_3998 PF00270 DEAD/DEAH box helicase YPK_3998 PF00570 HRDC domain YPK_3999 PF02253 Phospholipase A1 YPK_4000 PF03061 Thioesterase superfamily YPK_4001 PF00892 EamA-like transporter family YPK_4002 PF01544 CorA-like Mg2+ transporter protein YPK_4004 PF09370 Phosphoenolpyruvate hydrolase-like YPK_4007 PF13361 UvrD-like helicase C-terminal domain YPK_4007 PF00580 UvrD/REP helicase N-terminal domain YPK_4008 PF13419 Haloacid dehalogenase-like hydrolase YPK_4009 PF02899 Phage integrase, N-terminal SAM-like domain YPK_4009 PF00589 Phage integrase family YPK_4010 PF04340 Protein of unknown function, DUF484 YPK_4011 PF01678 Diaminopimelate epimerase YPK_4012 PF13627 Prokaryotic lipoprotein-attachment site YPK_4013 PF01491 Frataxin-like domain YPK_4015 PF12633 Adenylate cyclase NT domain YPK_4015 PF01295 Adenylate cyclase, class-I YPK_4016 PF03900 Porphobilinogen deaminase, C-terminal domain YPK_4016 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPK_4017 PF02602 Uroporphyrinogen-III synthase HemD YPK_4018 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPK_4019 PF07719 Tetratricopeptide repeat YPK_4019 PF07219 HemY protein N-terminus YPK_4021 PF00324 Amino acid permease YPK_4022 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPK_4023 PF06899 WzyE protein, O-antigen assembly polymerase YPK_4024 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPK_4025 PF01943 Polysaccharide biosynthesis protein YPK_4026 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPK_4028 PF00483 Nucleotidyl transferase YPK_4029 PF16363 GDP-mannose 4,6 dehydratase YPK_4030 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPK_4030 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPK_4030 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPK_4031 PF02350 UDP-N-acetylglucosamine 2-epimerase YPK_4032 PF02706 Chain length determinant protein YPK_4033 PF00953 Glycosyl transferase family 4 YPK_4034 PF07497 Rho termination factor, RNA-binding domain YPK_4034 PF07498 Rho termination factor, N-terminal domain YPK_4034 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_4035 PF00085 Thioredoxin YPK_4036 PF00270 DEAD/DEAH box helicase YPK_4036 PF00271 Helicase conserved C-terminal domain YPK_4037 PF02541 Ppx/GppA phosphatase family YPK_4038 PF13361 UvrD-like helicase C-terminal domain YPK_4038 PF00580 UvrD/REP helicase N-terminal domain YPK_4043 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_4043 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_4044 PF13953 PapC C-terminal domain YPK_4044 PF13954 PapC N-terminal domain YPK_4044 PF00577 Outer membrane usher protein YPK_4046 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_4046 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_4047 PF01320 Colicin immunity protein / pyocin immunity protein YPK_4051 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPK_4051 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPK_4052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_4052 PF03466 LysR substrate binding domain YPK_4056 PF00585 C-terminal regulatory domain of Threonine dehydratase YPK_4056 PF00291 Pyridoxal-phosphate dependent enzyme YPK_4057 PF00920 Dehydratase family YPK_4059 PF01063 Amino-transferase class IV YPK_4061 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_4061 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_4061 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_4062 PF01078 Magnesium chelatase, subunit ChlI YPK_4062 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPK_4063 PF04219 Protein of unknown function, DUF YPK_4064 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_4064 PF03466 LysR substrate binding domain YPK_4065 PF02653 Branched-chain amino acid transport system / permease component YPK_4066 PF02653 Branched-chain amino acid transport system / permease component YPK_4067 PF00005 ABC transporter YPK_4068 PF13407 Periplasmic binding protein domain YPK_4072 PF01177 Asp/Glu/Hydantoin racemase YPK_4073 PF00593 TonB dependent receptor YPK_4073 PF07715 TonB-dependent Receptor Plug Domain YPK_4074 PF05958 tRNA (Uracil-5-)-methyltransferase YPK_4075 PF07226 Protein of unknown function (DUF1422) YPK_4076 PF00440 Bacterial regulatory proteins, tetR family YPK_4078 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_4078 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_4079 PF03466 LysR substrate binding domain YPK_4079 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_4080 PF00462 Glutaredoxin YPK_4080 PF08534 Redoxin YPK_4081 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_4081 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_4082 PF03544 Gram-negative bacterial TonB protein C-terminal YPK_4083 PF00529 HlyD membrane-fusion protein of T1SS YPK_4084 PF00005 ABC transporter YPK_4084 PF00664 ABC transporter transmembrane region YPK_4086 PF00593 TonB dependent receptor YPK_4086 PF07715 TonB-dependent Receptor Plug Domain YPK_4087 PF14698 Argininosuccinate lyase C-terminal YPK_4087 PF00206 Lyase YPK_4088 PF00696 Amino acid kinase family YPK_4089 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPK_4089 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPK_4090 PF01546 Peptidase family M20/M25/M40 YPK_4090 PF07687 Peptidase dimerisation domain YPK_4091 PF00311 Phosphoenolpyruvate carboxylase YPK_4093 PF02219 Methylenetetrahydrofolate reductase YPK_4094 PF00696 Amino acid kinase family YPK_4094 PF00742 Homoserine dehydrogenase YPK_4094 PF03447 Homoserine dehydrogenase, NAD binding domain YPK_4095 PF01053 Cys/Met metabolism PLP-dependent enzyme YPK_4096 PF01340 Met Apo-repressor, MetJ YPK_4097 PF05360 yiaA/B two helix domain YPK_4098 PF01197 Ribosomal protein L31 YPK_4099 PF00271 Helicase conserved C-terminal domain YPK_4099 PF17764 3′ DNA-binding domain (3′BD) YPK_4099 PF18074 Primosomal protein N C-terminal domain YPK_4099 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPK_4099 PF00270 DEAD/DEAH box helicase YPK_4101 PF00356 Bacterial regulatory proteins, lacI family YPK_4102 PF05036 Sporulation related domain YPK_4103 PF00227 Proteasome subunit YPK_4104 PF00004 ATPase family associated with various cellular activities (AAA) YPK_4104 PF07724 AAA domain (Cdc48 subfamily) YPK_4104 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_4105 PF01040 UbiA prenyltransferase family YPK_4106 PF03737 Aldolase/RraA YPK_4109 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_4109 PF00529 HlyD membrane-fusion protein of T1SS YPK_4110 PF03412 Peptidase C39 family YPK_4110 PF00005 ABC transporter YPK_4110 PF00664 ABC transporter transmembrane region YPK_4111 PF06005 Cell division protein ZapB YPK_4112 PF00230 Major intrinsic protein YPK_4113 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_4113 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_4114 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPK_4115 PF00970 Oxidoreductase FAD-binding domain YPK_4115 PF00175 Oxidoreductase NAD-binding domain YPK_4116 PF05656 Protein of unknown function (DUF805) YPK_4117 PF07305 Protein of unknown function (DUF1454) YPK_4118 PF00121 Triosephosphate isomerase YPK_4119 PF03466 LysR substrate binding domain YPK_4119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_4120 PF02585 GlcNAc-PI de-N-acetylase YPK_4121 PF03737 Aldolase/RraA YPK_4122 PF00939 Sodium:sulfate symporter transmembrane region YPK_4126 PF00365 Phosphofructokinase YPK_4127 PF01545 Cation efflux family YPK_4127 PF16916 Dimerisation domain of Zinc Transporter YPK_4129 PF04754 Putative transposase, YhgA-like YPK_4131 PF07813 LTXXQ motif family protein YPK_4132 PF00072 Response regulator receiver domain YPK_4132 PF00486 Transcriptional regulatory protein, C terminal YPK_4133 PF00672 HAMP domain YPK_4133 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_4133 PF00512 His Kinase A (phospho-acceptor) domain YPK_4133 PF16527 Two-component sensor protein CpxA, periplasmic domain YPK_4134 PF02805 Metal binding domain of Ada YPK_4134 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPK_4134 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPK_4134 PF12833 Helix-turn-helix domain YPK_4135 PF00588 SpoU rRNA Methylase family YPK_4136 PF06426 Serine acetyltransferase, N-terminal YPK_4136 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_4137 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPK_4137 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPK_4138 PF02556 Preprotein translocase subunit SecB YPK_4139 PF00462 Glutaredoxin YPK_4140 PF00581 Rhodanese-like domain YPK_4141 PF01676 Metalloenzyme superfamily YPK_4141 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPK_4142 PF01551 Peptidase family M23 YPK_4143 PF04748 Divergent polysaccharide deacetylase YPK_4144 PF08240 Alcohol dehydrogenase GroES-like domain YPK_4144 PF00107 Zinc-binding dehydrogenase YPK_4145 PF00155 Aminotransferase class I and II YPK_4146 PF01370 NAD dependent epimerase/dehydratase family YPK_4147 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPK_4148 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPK_4149 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPK_4150 PF00535 Glycosyl transferase family 2 YPK_4151 PF01467 Cytidylyltransferase-like YPK_4152 PF06827 Zinc finger found in FPG and IleRS YPK_4152 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPK_4152 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPK_4153 PF00471 Ribosomal protein L33 YPK_4154 PF00830 Ribosomal L28 family YPK_4155 PF04002 RadC-like JAB domain YPK_4156 PF02441 Flavoprotein YPK_4156 PF04127 DNA / pantothenate metabolism flavoprotein YPK_4157 PF00692 dUTPase YPK_4158 PF00440 Bacterial regulatory proteins, tetR family YPK_4159 PF00156 Phosphoribosyl transferase domain YPK_4160 PF01138 3' exoribonuclease family, domain 1 YPK_4160 PF03725 3' exoribonuclease family, domain 2 YPK_4161 PF03755 YicC-like family, N-terminal region YPK_4161 PF08340 Domain of unknown function (DUF1732) YPK_4174 PF03458 UPF0126 domain YPK_4175 PF03120 NAD-dependent DNA ligase OB-fold domain YPK_4175 PF01653 NAD-dependent DNA ligase adenylation domain YPK_4176 PF00625 Guanylate kinase YPK_4177 PF01192 RNA polymerase Rpb6 YPK_4178 PF13291 ACT domain YPK_4178 PF04607 Region found in RelA / SpoT proteins YPK_4178 PF02824 TGS domain YPK_4179 PF00588 SpoU rRNA Methylase family YPK_4179 PF12105 SpoU, rRNA methylase, C-terminal YPK_4180 PF00270 DEAD/DEAH box helicase YPK_4180 PF00271 Helicase conserved C-terminal domain YPK_4180 PF17191 RecG wedge domain YPK_4181 PF03616 Sodium/glutamate symporter YPK_4182 PF00860 Permease family YPK_4183 PF05170 AsmA family YPK_4184 PF09500 Putative thioesterase (yiiD_Cterm) YPK_4184 PF00583 Acetyltransferase (GNAT) family YPK_4185 PF02580 D-Tyr-tRNA(Tyr) deacylase YPK_4186 PF03631 Virulence factor BrkB YPK_4187 PF13419 Haloacid dehalogenase-like hydrolase YPK_4189 PF03951 Glutamine synthetase, beta-Grasp domain YPK_4189 PF00120 Glutamine synthetase, catalytic domain YPK_4190 PF00512 His Kinase A (phospho-acceptor) domain YPK_4190 PF00989 PAS fold YPK_4190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_4191 PF00072 Response regulator receiver domain YPK_4191 PF00158 Sigma-54 interaction domain YPK_4191 PF02954 Bacterial regulatory protein, Fis family YPK_4192 PF04055 Radical SAM superfamily YPK_4192 PF06969 HemN C-terminal domain YPK_4193 PF04220 Der GTPase activator (YihI) YPK_4194 PF01926 50S ribosome-binding GTPase YPK_4195 PF01367 5'-3' exonuclease, C-terminal SAM fold YPK_4195 PF01612 3'-5' exonuclease YPK_4195 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPK_4195 PF00476 DNA polymerase family A YPK_4196 PF01323 DSBA-like thioredoxin domain YPK_4197 PF01636 Phosphotransferase enzyme family YPK_4198 PF06288 Protein of unknown function (DUF1040) YPK_4199 PF12804 MobA-like NTP transferase domain YPK_4200 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPK_4201 PF00872 Transposase, Mutator family YPK_4206 PF07729 FCD domain YPK_4206 PF00392 Bacterial regulatory proteins, gntR family YPK_4207 PF07690 Major Facilitator Superfamily YPK_4209 PF00294 pfkB family carbohydrate kinase YPK_4210 PF05025 RbsD / FucU transport protein family YPK_4211 PF02705 K+ potassium transporter YPK_4212 PF12592 Protein of unknown function (DUF3763) YPK_4212 PF07728 AAA domain (dynein-related subfamily) YPK_4212 PF17868 AAA lid domain YPK_4213 PF05762 VWA domain containing CoxE-like protein YPK_4214 PF03590 Aspartate-ammonia ligase YPK_4215 PF01037 Lrp/AsnC ligand binding domain YPK_4216 PF00258 Flavodoxin YPK_4217 PF01134 Glucose inhibited division protein A YPK_4217 PF13932 GidA associated domain YPK_4218 PF02527 rRNA small subunit methyltransferase G YPK_4219 PF03899 ATP synthase I chain YPK_4220 PF00119 ATP synthase A chain YPK_4221 PF00137 ATP synthase subunit C YPK_4222 PF00430 ATP synthase B/B' CF(0) YPK_4223 PF00213 ATP synthase delta (OSCP) subunit YPK_4224 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPK_4224 PF00306 ATP synthase alpha/beta chain, C terminal domain YPK_4224 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_4225 PF00231 ATP synthase YPK_4226 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPK_4226 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_4227 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPK_4227 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPK_4228 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_4228 PF12804 MobA-like NTP transferase domain YPK_4229 PF01380 SIS domain YPK_4231 PF12849 PBP superfamily domain YPK_4232 PF00528 Binding-protein-dependent transport system inner membrane component YPK_4233 PF00528 Binding-protein-dependent transport system inner membrane component YPK_4234 PF00005 ABC transporter YPK_4235 PF01895 PhoU domain YPK_4237 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_4238 PF00528 Binding-protein-dependent transport system inner membrane component YPK_4239 PF00528 Binding-protein-dependent transport system inner membrane component YPK_4240 PF13419 Haloacid dehalogenase-like hydrolase YPK_4241 PF00860 Permease family YPK_4244 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPK_4244 PF07055 Enoyl reductase FAD binding domain YPK_4244 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPK_4245 PF01926 50S ribosome-binding GTPase YPK_4245 PF12631 MnmE helical domain YPK_4245 PF10396 GTP-binding protein TrmE N-terminus YPK_4246 PF02096 60Kd inner membrane protein YPK_4246 PF14849 YidC periplasmic domain YPK_4247 PF01809 Putative membrane protein insertion efficiency factor YPK_4248 PF00825 Ribonuclease P YPK_4249 PF00468 Ribosomal protein L34