YPK_0001 IPR001957 Chromosomal replication control, initiator DnaA YPK_0001 IPR003593 AAA+ ATPase domain YPK_0001 IPR010921 Trp repressor/replication initiator YPK_0001 IPR013159 Chromosomal replication initiator, DnaA C-terminal YPK_0001 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) YPK_0001 IPR018312 Chromosomal replication control, initiator DnaA, conserved site YPK_0001 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_0001 IPR024633 DnaA N-terminal domain YPK_0001 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0001 IPR038454 YPK_0001 YPK_0002 IPR001001 DNA polymerase III, beta chain YPK_0002 IPR022634 DNA polymerase III, beta chain, N-terminal YPK_0002 IPR022635 DNA polymerase III, beta chain, C-terminal YPK_0002 IPR022637 DNA polymerase III, beta chain, central YPK_0003 IPR001238 DNA-binding, RecF YPK_0003 IPR003395 RecF/RecN/SMC, N-terminal YPK_0003 IPR018078 DNA-binding, RecF, conserved site YPK_0003 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0004 IPR000565 DNA topoisomerase, type IIA, subunit B YPK_0004 IPR001241 DNA topoisomerase, type IIA YPK_0004 IPR002288 DNA gyrase B subunit, C-terminal YPK_0004 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_0004 IPR006171 Toprim domain YPK_0004 IPR011557 DNA gyrase, subunit B YPK_0004 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPK_0004 IPR013759 DNA topoisomerase, type IIA, central domain YPK_0004 IPR013760 DNA topoisomerase, type IIA-like domain YPK_0004 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0004 IPR018522 DNA topoisomerase, type IIA, conserved site YPK_0004 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0004 IPR036890 YPK_0004 YPK_0005 IPR000150 Cof protein YPK_0005 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPK_0005 IPR023214 HAD-like domain YPK_0005 IPR036412 YPK_0005 YPK_0007 IPR003462 Ornithine cyclodeaminase/mu-crystallin YPK_0007 IPR023401 Ornithine cyclodeaminase, N-terminal YPK_0007 IPR036291 YPK_0007 YPK_0008 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPK_0008 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_0008 IPR036052 YPK_0008 YPK_0009 IPR011042 Six-bladed beta-propeller, TolB-like YPK_0009 IPR011659 WD40-like Beta Propeller YPK_0009 IPR022223 Protein of unknown function DUF3748 YPK_0010 IPR010780 Protein of unknown function DUF1375 YPK_0011 IPR002068 Alpha crystallin/Hsp20 domain YPK_0011 IPR008978 HSP20-like chaperone YPK_0011 IPR023728 Small heat shock protein IbpA YPK_0012 IPR002068 Alpha crystallin/Hsp20 domain YPK_0012 IPR008978 HSP20-like chaperone YPK_0012 IPR022848 Small heat shock protein IbpB YPK_0013 IPR006037 Regulator of K+ conductance, C-terminal YPK_0013 IPR006512 YidE/YbjL duplication YPK_0013 IPR023018 Transport protein YidE, putative YPK_0013 IPR036721 YPK_0013 YPK_0014 IPR004839 Aminotransferase, class I/classII YPK_0014 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_0014 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPK_0016 IPR014635 Alpha-amylase, MalS type YPK_0016 IPR017853 Glycoside hydrolase, superfamily YPK_0017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_0017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPK_0017 IPR023756 Glyoxylate/hydroxypyruvate reductase B YPK_0017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPK_0017 IPR036291 YPK_0017 YPK_0018 IPR036388 YPK_0018 YPK_0018 IPR036390 YPK_0018 YPK_0019 IPR006664 Outer membrane protein, bacterial YPK_0019 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_0019 IPR036737 YPK_0019 YPK_0019 IPR039567 YPK_0019 YPK_0020 IPR000182 GNAT domain YPK_0020 IPR016181 Acyl-CoA N-acyltransferase YPK_0021 IPR004597 DNA-3-methyladenine glycosylase I YPK_0021 IPR005019 Methyladenine glycosylase YPK_0021 IPR011257 DNA glycosylase YPK_0022 IPR002310 Glycine-tRNA ligase, alpha subunit YPK_0023 IPR008909 DALR anticodon binding YPK_0023 IPR015944 Glycine-tRNA ligase, beta subunit YPK_0025 IPR021413 Protein of unknown function DUF3053 YPK_0026 IPR002178 PTS EIIA type-2 domain YPK_0026 IPR003352 Phosphotransferase system, EIIC YPK_0026 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPK_0026 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC YPK_0026 IPR016152 Phosphotransferase/anion transporter YPK_0026 IPR036095 YPK_0026 YPK_0027 IPR000669 Mannitol dehydrogenase YPK_0027 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_0027 IPR013118 Mannitol dehydrogenase, C-terminal YPK_0027 IPR013131 Mannitol dehydrogenase, N-terminal YPK_0027 IPR013328 Dehydrogenase, multihelical YPK_0027 IPR023027 Mannitol dehydrogenase, conserved site YPK_0027 IPR023028 Mannitol-1-phosphate 5-dehydrogenase YPK_0027 IPR036291 YPK_0027 YPK_0028 IPR007761 Mannitol repressor YPK_0028 IPR038026 YPK_0028 YPK_0030 IPR021230 Protein of unknown function DUF2810 YPK_0031 IPR019545 DM13 domain YPK_0034 IPR003660 HAMP linker domain YPK_0034 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_0034 IPR004090 Chemotaxis methyl-accepting receptor YPK_0034 IPR032255 YPK_0034 YPK_0035 IPR001189 Manganese/iron superoxide dismutase YPK_0035 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPK_0035 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPK_0035 IPR019833 Manganese/iron superoxide dismutase, binding site YPK_0035 IPR036314 YPK_0035 YPK_0035 IPR036324 YPK_0035 YPK_0036 IPR003786 Protein FdhD YPK_0036 IPR016193 Cytidine deaminase-like YPK_0037 IPR006656 Molybdopterin oxidoreductase YPK_0037 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPK_0037 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPK_0038 IPR006443 Formate dehydrogenase, alpha subunit, anaerobic YPK_0038 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPK_0038 IPR006656 Molybdopterin oxidoreductase YPK_0038 IPR006657 Molydopterin dinucleotide-binding domain YPK_0038 IPR009010 Aspartate decarboxylase-like domain YPK_0039 IPR006470 Formate dehydrogenase, beta subunit YPK_0039 IPR014603 Formate dehydrogenase, iron-sulphur subunit YPK_0039 IPR015246 Formate dehydrogenase, transmembrane YPK_0039 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_0039 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_0039 IPR038384 YPK_0039 YPK_0040 IPR006471 Formate dehydrogenase, gamma subunit YPK_0040 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPK_0040 IPR016174 Di-haem cytochrome, transmembrane YPK_0041 IPR006452 Formate dehydrogenase accessory protein YPK_0041 IPR024064 FdhE-like YPK_0042 IPR004534 L-seryl-tRNA selenium transferase YPK_0042 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_0042 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0042 IPR018319 L-seryl-tRNA selenium transferase-like YPK_0042 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain YPK_0043 IPR000795 Elongation factor, GTP-binding domain YPK_0043 IPR004535 Translation elongation factor, selenocysteine-specific YPK_0043 IPR009000 Translation protein, beta-barrel domain YPK_0043 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPK_0043 IPR015190 Translation elongation factor SelB, winged helix, type 2 YPK_0043 IPR015191 Translation elongation factor SelB, winged helix, type 3 YPK_0043 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0043 IPR031157 YPK_0043 YPK_0043 IPR036388 YPK_0043 YPK_0043 IPR036390 YPK_0043 YPK_0045 IPR025320 Protein of unknown function DUF4225 YPK_0048 IPR011701 Major facilitator superfamily YPK_0048 IPR036259 YPK_0048 YPK_0050 IPR002656 Acyltransferase 3 YPK_0050 IPR032905 YPK_0050 YPK_0051 IPR000259 Fimbrial-type adhesion domain YPK_0051 IPR008966 Adhesion domain YPK_0051 IPR036937 YPK_0051 YPK_0052 IPR000015 Outer membrane usher protein YPK_0052 IPR018030 Fimbrial membrane usher, conserved site YPK_0052 IPR025885 PapC, N-terminal domain YPK_0052 IPR025949 PapC-like, C-terminal domain YPK_0052 IPR037224 YPK_0052 YPK_0053 IPR001829 Pili assembly chaperone, bacterial YPK_0053 IPR008962 PapD-like YPK_0053 IPR013783 Immunoglobulin-like fold YPK_0053 IPR016147 PapD, N-terminal, bacterial YPK_0053 IPR016148 Pili assembly chaperone, C-terminal domain YPK_0053 IPR018046 Pili assembly chaperone, conserved site YPK_0053 IPR036316 YPK_0053 YPK_0054 IPR000259 Fimbrial-type adhesion domain YPK_0054 IPR008966 Adhesion domain YPK_0054 IPR036937 YPK_0054 YPK_0055 IPR000577 YPK_0055 YPK_0055 IPR006000 Xylulokinase YPK_0055 IPR018483 Carbohydrate kinase, FGGY, conserved site YPK_0055 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_0055 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_0056 IPR001998 Xylose isomerase YPK_0056 IPR013452 Xylose isomerase, bacterial-type YPK_0056 IPR036237 YPK_0056 YPK_0057 IPR013456 D-xylose ABC transporter, substrate-binding protein YPK_0057 IPR025997 Periplasmic binding protein domain YPK_0057 IPR028082 Periplasmic binding protein-like I YPK_0058 IPR003439 ABC transporter-like YPK_0058 IPR003593 AAA+ ATPase domain YPK_0058 IPR013455 ABC transporter, D-xylose, ATP-binding protein YPK_0058 IPR017871 ABC transporter, conserved site YPK_0058 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0059 IPR001851 ABC transporter, permease YPK_0060 IPR009057 Homeodomain-like YPK_0060 IPR018060 DNA binding HTH domain, AraC-type YPK_0060 IPR018062 HTH domain AraC-type, conserved site YPK_0060 IPR020449 Transcription regulator HTH, AraC- type YPK_0060 IPR028082 Periplasmic binding protein-like I YPK_0061 IPR002104 Integrase, catalytic YPK_0061 IPR010998 Integrase, Lambda-type, N-terminal YPK_0061 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_0061 IPR013762 Integrase-like, catalytic core YPK_0061 IPR025166 Domain of unknown function DUF4102 YPK_0061 IPR038488 YPK_0061 YPK_0062 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0064 IPR004919 Domain of unknown function DUF262 YPK_0065 IPR003356 DNA methylase, adenine-specific YPK_0065 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain YPK_0065 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0065 IPR038333 YPK_0065 YPK_0066 IPR002514 Transposase IS3/IS911family YPK_0066 IPR009057 Homeodomain-like YPK_0067 IPR001584 Integrase, catalytic core YPK_0067 IPR012337 Ribonuclease H-like domain YPK_0067 IPR025948 HTH-like domain YPK_0067 IPR036397 YPK_0067 YPK_0068 IPR003439 ABC transporter-like YPK_0068 IPR003593 AAA+ ATPase domain YPK_0068 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0069 IPR000522 ABC transporter, permease protein YPK_0069 IPR037294 YPK_0069 YPK_0070 IPR000522 ABC transporter, permease protein YPK_0070 IPR037294 YPK_0070 YPK_0071 IPR002491 ABC transporter periplasmic binding domain YPK_0073 IPR000620 Drug/metabolite transporter YPK_0074 IPR000836 Phosphoribosyltransferase domain YPK_0074 IPR029057 Phosphoribosyltransferase-like YPK_0075 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_0075 IPR036052 YPK_0075 YPK_0076 IPR023636 Urocanase conserved site YPK_0076 IPR023637 Urocanase YPK_0076 IPR035085 YPK_0076 YPK_0076 IPR035400 YPK_0076 YPK_0076 IPR035401 YPK_0076 YPK_0076 IPR036190 YPK_0076 YPK_0076 IPR038364 YPK_0076 YPK_0077 IPR001106 Aromatic amino acid lyase YPK_0077 IPR005921 Histidine ammonia-lyase YPK_0077 IPR008948 L-Aspartase-like YPK_0077 IPR022313 Phenylalanine/histidine ammonia-lyases, active site YPK_0077 IPR024083 Fumarase/histidase, N-terminal YPK_0078 IPR002293 Amino acid/polyamine transporter I YPK_0078 IPR004840 Amino acid permease, conserved site YPK_0078 IPR004841 Amino acid permease/ SLC12A domain YPK_0079 IPR022742 Putative lysophospholipase YPK_0079 IPR029058 Alpha/Beta hydrolase fold YPK_0080 IPR000917 Sulfatase YPK_0080 IPR012549 Domain of unknown function DUF1705 YPK_0080 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_0080 IPR017850 Alkaline-phosphatase-like, core domain YPK_0081 IPR000792 Transcription regulator LuxR, C-terminal YPK_0081 IPR001789 Signal transduction response regulator, receiver domain YPK_0081 IPR011006 CheY-like superfamily YPK_0081 IPR016032 Signal transduction response regulator, C-terminal effector YPK_0082 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_0082 IPR007895 MASE1 YPK_0082 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPK_0082 IPR036890 YPK_0082 YPK_0083 IPR000849 Sugar phosphate transporter YPK_0083 IPR011701 Major facilitator superfamily YPK_0083 IPR036259 YPK_0083 YPK_0085 IPR008638 Filamentous haemagglutinin, N-terminal YPK_0085 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPK_0085 IPR011050 Pectin lyase fold/virulence factor YPK_0085 IPR012334 Pectin lyase fold YPK_0086 IPR005565 Haemolysin activator HlyB YPK_0086 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_0086 IPR027282 Two partner secretion pathway transporter YPK_0086 IPR035251 YPK_0086 YPK_0088 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_0088 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site YPK_0088 IPR030678 YPK_0088 YPK_0089 IPR000515 MetI-like domain YPK_0089 IPR035906 YPK_0089 YPK_0090 IPR000515 MetI-like domain YPK_0090 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_0090 IPR035906 YPK_0090 YPK_0091 IPR003439 ABC transporter-like YPK_0091 IPR003593 AAA+ ATPase domain YPK_0091 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPK_0091 IPR017871 ABC transporter, conserved site YPK_0091 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0092 IPR003439 ABC transporter-like YPK_0092 IPR003593 AAA+ ATPase domain YPK_0092 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPK_0092 IPR017871 ABC transporter, conserved site YPK_0092 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0093 IPR002037 Glycoside hydrolase, family 8 YPK_0093 IPR008928 Six-hairpin glycosidase-like YPK_0093 IPR012341 Six-hairpin glycosidase YPK_0094 IPR000160 GGDEF domain YPK_0094 IPR001633 EAL domain YPK_0094 IPR029787 Nucleotide cyclase YPK_0094 IPR033419 YPK_0094 YPK_0094 IPR035919 YPK_0094 YPK_0095 IPR009331 Oligogalacturonate-specific porin YPK_0096 IPR010702 Periplasmic pectate lyase YPK_0097 IPR000421 Coagulation factor 5/8 C-terminal type domain YPK_0097 IPR008979 Galactose-binding domain-like YPK_0098 IPR001991 Sodium:dicarboxylate symporter YPK_0098 IPR018107 Sodium:dicarboxylate symporter, conserved site YPK_0098 IPR023954 C4-dicarboxylate transport protein YPK_0098 IPR036458 YPK_0098 YPK_0100 IPR007863 Peptidase M16, C-terminal domain YPK_0100 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPK_0100 IPR011765 Peptidase M16, N-terminal YPK_0101 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPK_0101 IPR011611 Carbohydrate kinase PfkB YPK_0101 IPR029056 Ribokinase-like YPK_0102 IPR004370 4-oxalocrotonate tautomerase YPK_0102 IPR014347 Tautomerase/MIF superfamily YPK_0102 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type YPK_0103 IPR001633 EAL domain YPK_0103 IPR035919 YPK_0103 YPK_0104 IPR007844 AsmA YPK_0105 IPR003763 CDP-diacylglycerol pyrophosphatase YPK_0105 IPR036265 YPK_0105 YPK_0105 IPR038433 YPK_0105 YPK_0106 IPR005274 Inner membrane protein YhjD YPK_0106 IPR017039 Virulence factor BrkB YPK_0107 IPR004899 Pertactin, central region YPK_0107 IPR005546 Autotransporter beta-domain YPK_0107 IPR006315 Outer membrane autotransporter barrel YPK_0107 IPR011050 Pectin lyase fold/virulence factor YPK_0107 IPR012332 P22 tailspike C-terminal domain-like YPK_0107 IPR036709 YPK_0107 YPK_0108 IPR017483 Conserved hypothetical protein CHP03034 YPK_0109 IPR010351 Protein of unknown function DUF943 YPK_0110 IPR010351 Protein of unknown function DUF943 YPK_0111 IPR004381 Glycerate kinase YPK_0111 IPR018193 Glycerate kinase, flavodoxin-like domain YPK_0111 IPR018197 Glycerate kinase, restriction-enzyme-like fold YPK_0111 IPR036129 YPK_0111 YPK_0112 IPR003474 Gluconate transporter YPK_0113 IPR008599 Putative sugar diacid recognition YPK_0113 IPR025736 PucR C-terminal helix-turn-helix domain YPK_0114 IPR001100 YPK_0114 YPK_0114 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_0114 IPR006322 Glutathione reductase, eukaryote/bacterial YPK_0114 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPK_0114 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPK_0114 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_0114 IPR036188 YPK_0114 YPK_0115 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_0115 IPR007473 Ribosomal RNA large subunit methyltransferase J YPK_0115 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0116 IPR001567 Peptidase M3A/M3B YPK_0116 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YPK_0117 IPR007536 Ribosomal RNA small subunit methyltransferase J YPK_0117 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0118 IPR006026 Peptidase, metallopeptidase YPK_0118 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0118 IPR013858 Peptidase M10 serralysin C-terminal domain YPK_0118 IPR016294 Peptidase M10B YPK_0118 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass YPK_0118 IPR024079 Metallopeptidase, catalytic domain YPK_0119 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase YPK_0119 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YPK_0119 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain YPK_0119 IPR014362 Glutamate dehydrogenase YPK_0119 IPR033524 YPK_0119 YPK_0119 IPR036291 YPK_0119 YPK_0120 IPR006015 Universal stress protein A YPK_0120 IPR006016 UspA YPK_0120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_0121 IPR019598 Universal stress protein B YPK_0122 IPR001204 Phosphate transporter YPK_0123 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YPK_0123 IPR023166 HI0933 insert-like domain YPK_0123 IPR036188 YPK_0123 YPK_0124 IPR001789 Signal transduction response regulator, receiver domain YPK_0124 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_0124 IPR003660 HAMP linker domain YPK_0124 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_0124 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_0124 IPR011006 CheY-like superfamily YPK_0124 IPR035965 YPK_0124 YPK_0124 IPR036097 YPK_0124 YPK_0124 IPR036890 YPK_0124 YPK_0125 IPR003439 ABC transporter-like YPK_0125 IPR003593 AAA+ ATPase domain YPK_0125 IPR017871 ABC transporter, conserved site YPK_0125 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0126 IPR001851 ABC transporter, permease YPK_0127 IPR025997 Periplasmic binding protein domain YPK_0127 IPR028082 Periplasmic binding protein-like I YPK_0128 IPR010864 Protein of unknown function DUF1498 YPK_0128 IPR014710 RmlC-like jelly roll fold YPK_0129 IPR000771 Ketose-bisphosphate aldolase, class-II YPK_0129 IPR013785 Aldolase-type TIM barrel YPK_0130 IPR011611 Carbohydrate kinase PfkB YPK_0130 IPR029056 Ribokinase-like YPK_0131 IPR001789 Signal transduction response regulator, receiver domain YPK_0131 IPR001867 Signal transduction response regulator, C-terminal YPK_0131 IPR011006 CheY-like superfamily YPK_0131 IPR016032 Signal transduction response regulator, C-terminal effector YPK_0131 IPR036388 YPK_0131 YPK_0133 IPR003829 Pirin, N-terminal domain YPK_0133 IPR011051 RmlC-like cupin domain YPK_0133 IPR012093 Pirin YPK_0133 IPR014710 RmlC-like jelly roll fold YPK_0134 IPR000843 Transcription regulator HTH, LacI YPK_0134 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_0134 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0134 IPR028082 Periplasmic binding protein-like I YPK_0135 IPR003474 Gluconate transporter YPK_0136 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPK_0136 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0136 IPR031322 YPK_0136 YPK_0140 IPR002771 Multiple antibiotic resistance (MarC)-related YPK_0141 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site YPK_0141 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPK_0141 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type YPK_0141 IPR012080 Aspartate-semialdehyde dehydrogenase YPK_0141 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPK_0141 IPR036291 YPK_0141 YPK_0145 IPR003344 Bacterial Ig-like, group 1 YPK_0145 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPK_0145 IPR008964 Invasin/intimin cell-adhesion YPK_0145 IPR013783 Immunoglobulin-like fold YPK_0145 IPR018392 LysM domain YPK_0145 IPR024519 Domain of unknown function DUF3442, intimin/invasin YPK_0145 IPR036779 YPK_0145 YPK_0145 IPR038177 YPK_0145 YPK_0146 IPR010559 Signal transduction histidine kinase, internal region YPK_0146 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region YPK_0146 IPR036890 YPK_0146 YPK_0147 IPR004193 Glycoside hydrolase, family 13, N-terminal YPK_0147 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPK_0147 IPR006048 Alpha-amylase, C-terminal all beta YPK_0147 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB YPK_0147 IPR013780 Glycosyl hydrolase, family 13, all-beta YPK_0147 IPR013783 Immunoglobulin-like fold YPK_0147 IPR014756 Immunoglobulin E-set YPK_0147 IPR017853 Glycoside hydrolase, superfamily YPK_0147 IPR037439 YPK_0147 YPK_0148 IPR004193 Glycoside hydrolase, family 13, N-terminal YPK_0148 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPK_0148 IPR011837 Glycogen debranching enzyme, GlgX type YPK_0148 IPR013780 Glycosyl hydrolase, family 13, all-beta YPK_0148 IPR013783 Immunoglobulin-like fold YPK_0148 IPR014756 Immunoglobulin E-set YPK_0148 IPR017853 Glycoside hydrolase, superfamily YPK_0148 IPR022844 Glycogen debranching enzyme, bacterial YPK_0149 IPR005835 Nucleotidyl transferase YPK_0149 IPR005836 ADP-glucose pyrophosphorylase, conserved site YPK_0149 IPR011004 Trimeric LpxA-like YPK_0149 IPR011831 Glucose-1-phosphate adenylyltransferase YPK_0149 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial YPK_0149 IPR029044 Nucleotide-diphospho-sugar transferases YPK_0150 IPR001296 Glycosyl transferase, family 1 YPK_0150 IPR011835 Glycogen/starch synthase, ADP-glucose type YPK_0150 IPR013534 Starch synthase, catalytic domain YPK_0151 IPR000811 Glycosyl transferase, family 35 YPK_0151 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPK_0151 IPR035090 YPK_0151 YPK_0152 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPK_0152 IPR006076 FAD dependent oxidoreductase YPK_0152 IPR031656 YPK_0152 YPK_0152 IPR036188 YPK_0152 YPK_0152 IPR038299 YPK_0152 YPK_0154 IPR010351 Protein of unknown function DUF943 YPK_0157 IPR001034 HTH DeoR N-terminal domain YPK_0157 IPR014036 DeoR C-terminal sensor domain YPK_0157 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPK_0157 IPR036388 YPK_0157 YPK_0157 IPR036390 YPK_0157 YPK_0157 IPR037171 YPK_0157 YPK_0158 IPR022732 Peptidase S54, GlpG peptidase, N-terminal YPK_0158 IPR022764 Peptidase S54, rhomboid domain YPK_0158 IPR023662 Rhomboid protease GlpG YPK_0158 IPR035952 YPK_0158 YPK_0158 IPR038236 YPK_0158 YPK_0159 IPR001763 Rhodanese-like domain YPK_0159 IPR023695 Thiosulfate sulfurtransferase, bacterial YPK_0159 IPR036873 YPK_0159 YPK_0160 IPR000792 Transcription regulator LuxR, C-terminal YPK_0160 IPR011990 Tetratricopeptide-like helical domain YPK_0160 IPR016032 Signal transduction response regulator, C-terminal effector YPK_0160 IPR023768 Transcriptional regulator HTH-type, MalT YPK_0160 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0160 IPR036388 YPK_0160 YPK_0161 IPR000811 Glycosyl transferase, family 35 YPK_0161 IPR011833 Glycogen/starch/alpha-glucan phosphorylase YPK_0161 IPR035090 YPK_0161 YPK_0162 IPR003385 Glycoside hydrolase, family 77 YPK_0162 IPR017853 Glycoside hydrolase, superfamily YPK_0163 IPR000361 FeS cluster biogenesis YPK_0163 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal YPK_0163 IPR017726 Fe/S biogenesis protein NfuA YPK_0163 IPR034904 YPK_0163 YPK_0163 IPR035903 YPK_0163 YPK_0164 IPR000836 Phosphoribosyltransferase domain YPK_0164 IPR029057 Phosphoribosyltransferase-like YPK_0165 IPR000073 Alpha/beta hydrolase fold-1 YPK_0165 IPR010076 Pimelyl-[acyl-carrier protein] methyl ester esterase YPK_0165 IPR029058 Alpha/Beta hydrolase fold YPK_0166 IPR010854 Domain of unknown function DUF1471 YPK_0166 IPR025543 Dodecin-like YPK_0166 IPR036275 YPK_0166 YPK_0167 IPR015102 Transcriptional regulator HTH-type, FeoC YPK_0167 IPR023732 Ferrous iron transport protein C YPK_0167 IPR036388 YPK_0167 YPK_0167 IPR036390 YPK_0167 YPK_0168 IPR003373 Ferrous iron transport protein B YPK_0168 IPR005225 Small GTP-binding protein domain YPK_0168 IPR011640 Ferrous iron transport protein B, C-terminal YPK_0168 IPR011642 Nucleoside recognition Gate YPK_0168 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0168 IPR030389 YPK_0168 YPK_0169 IPR007167 Ferrous iron transporter FeoA domain YPK_0169 IPR008988 Transcriptional repressor, C-terminal YPK_0169 IPR038157 YPK_0169 YPK_0170 IPR003029 Ribosomal protein S1, RNA-binding domain YPK_0170 IPR006641 YqgF/RNase H-like domain YPK_0170 IPR010994 RuvA domain 2-like YPK_0170 IPR012337 Ribonuclease H-like domain YPK_0170 IPR012340 Nucleic acid-binding, OB-fold YPK_0170 IPR018974 Tex-like protein, N-terminal YPK_0170 IPR022967 RNA-binding domain, S1 YPK_0170 IPR023319 Tex-like protein, HTH domain YPK_0170 IPR023323 Tex-like domain YPK_0170 IPR032639 YPK_0170 YPK_0170 IPR037027 YPK_0170 YPK_0171 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPK_0171 IPR006358 Transcription elongation factor GreB YPK_0171 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPK_0171 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPK_0171 IPR023459 Transcription elongation factor GreA/GreB family YPK_0171 IPR028624 Transcription elongation factor GreA/GreB YPK_0171 IPR036805 YPK_0171 YPK_0171 IPR036953 YPK_0171 YPK_0172 IPR001789 Signal transduction response regulator, receiver domain YPK_0172 IPR001867 Signal transduction response regulator, C-terminal YPK_0172 IPR011006 CheY-like superfamily YPK_0172 IPR016032 Signal transduction response regulator, C-terminal effector YPK_0172 IPR036388 YPK_0172 YPK_0173 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_0173 IPR003660 HAMP linker domain YPK_0173 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_0173 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_0173 IPR036097 YPK_0173 YPK_0173 IPR036890 YPK_0173 YPK_0174 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising YPK_0174 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal YPK_0174 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal YPK_0174 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site YPK_0175 IPR000397 Heat shock protein Hsp33 YPK_0175 IPR016153 Heat shock protein Hsp33, N-terminal YPK_0175 IPR016154 Heat shock protein Hsp33, C-terminal YPK_0175 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain YPK_0176 IPR002942 RNA-binding S4 domain YPK_0176 IPR025708 Heat shock protein 15 YPK_0176 IPR036986 YPK_0176 YPK_0177 IPR006439 HAD hydrolase, subfamily IA YPK_0177 IPR023214 HAD-like domain YPK_0177 IPR036412 YPK_0177 YPK_0178 IPR010771 Intracellular growth attenuator IgaA YPK_0180 IPR000086 NUDIX hydrolase domain YPK_0180 IPR015797 NUDIX hydrolase domain-like YPK_0180 IPR020084 NUDIX hydrolase, conserved site YPK_0181 IPR012263 Adenine modification methylase, M.EcoRV-type YPK_0181 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPK_0181 IPR023095 Adenine-specific methyltransferase, domain 2 YPK_0181 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0182 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_0183 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 YPK_0184 IPR018755 Bacteriophage Mu, Gp48 YPK_0185 IPR006949 Baseplate assembly protein J-like, predicted YPK_0186 IPR010877 Bacteriophage Mu, Gp46 YPK_0187 IPR013046 Bacteriophage Mu/P2, baseplate assembly YPK_0187 IPR014462 Bacteriophage Mu, Gp45 YPK_0188 IPR026276 Baseplate protein GpP YPK_0189 IPR009826 DNA circulation, N-terminal YPK_0190 IPR010090 Phage tail tape measure protein YPK_0194 IPR014926 Bacteriophage D3112, Orf24 YPK_0199 IPR000726 Glycoside hydrolase, family 19, catalytic YPK_0199 IPR023346 Lysozyme-like domain YPK_0201 IPR009057 Homeodomain-like YPK_0201 IPR014875 Mor transcription activator YPK_0202 IPR009363 Bacteriophage Mu, Gp16 YPK_0210 IPR016868 Bacteriophage B3, Orf5 YPK_0210 IPR024498 Domain of unknown function DUF2786 YPK_0212 IPR021505 Bacteriophage B3, Orf6 YPK_0215 IPR003593 AAA+ ATPase domain YPK_0215 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0215 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0216 IPR001584 Integrase, catalytic core YPK_0216 IPR009004 Transposase, Mu, C-terminal YPK_0216 IPR009061 DNA binding domain, putative YPK_0216 IPR012337 Ribonuclease H-like domain YPK_0216 IPR015378 Transposase-like, Mu, C-terminal YPK_0216 IPR036388 YPK_0216 YPK_0216 IPR036397 YPK_0216 YPK_0217 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0217 IPR038722 YPK_0217 YPK_0218 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0219 IPR001264 Glycosyl transferase, family 51 YPK_0219 IPR001460 Penicillin-binding protein, transpeptidase YPK_0219 IPR012338 Beta-lactamase/transpeptidase-like YPK_0219 IPR023346 Lysozyme-like domain YPK_0219 IPR031376 YPK_0219 YPK_0219 IPR036950 YPK_0219 YPK_0220 IPR005883 Type IV pilus assembly protein PilM YPK_0221 IPR007813 Fimbrial assembly PilN YPK_0223 IPR019684 Protein of unknown function DUF2531 YPK_0224 IPR001775 GspD/PilQ family YPK_0224 IPR004846 Type II/III secretion system YPK_0224 IPR005644 NolW-like YPK_0224 IPR013355 Type IV pilus secretin PilQ YPK_0224 IPR038591 YPK_0224 YPK_0225 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPK_0225 IPR023000 Shikimate kinase, conserved site YPK_0225 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0225 IPR031322 YPK_0225 YPK_0226 IPR016037 3-dehydroquinate synthase AroB YPK_0226 IPR030960 YPK_0226 YPK_0226 IPR030963 YPK_0226 YPK_0227 IPR007730 Sporulation-related domain YPK_0227 IPR032899 YPK_0227 YPK_0227 IPR036680 YPK_0227 YPK_0228 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_0228 IPR012263 Adenine modification methylase, M.EcoRV-type YPK_0228 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPK_0228 IPR023095 Adenine-specific methyltransferase, domain 2 YPK_0228 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0229 IPR000056 Ribulose-phosphate 3-epimerase-like YPK_0229 IPR011060 Ribulose-phosphate binding barrel YPK_0229 IPR013785 Aldolase-type TIM barrel YPK_0229 IPR026019 Ribulose-phosphate 3-epimerase YPK_0230 IPR006346 2-phosphoglycolate phosphatase, prokaryotic YPK_0230 IPR006439 HAD hydrolase, subfamily IA YPK_0230 IPR023198 Phosphoglycolate phosphatase, domain 2 YPK_0230 IPR023214 HAD-like domain YPK_0230 IPR036412 YPK_0230 YPK_0230 IPR037512 YPK_0230 YPK_0231 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_0231 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPK_0231 IPR002306 Tryptophan-tRNA ligase YPK_0231 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_0231 IPR024109 Tryptophan-tRNA ligase, bacterial-type YPK_0232 IPR000878 Tetrapyrrole methylase YPK_0232 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPK_0232 IPR006366 Uroporphyrin-III C-methyltransferase YPK_0232 IPR006367 Sirohaem synthase, N-terminal YPK_0232 IPR012409 Sirohaem synthase YPK_0232 IPR014776 Tetrapyrrole methylase, subdomain 2 YPK_0232 IPR014777 Tetrapyrrole methylase, subdomain 1 YPK_0232 IPR019478 Sirohaem synthase, dimerisation domain YPK_0232 IPR028281 Siroheme synthase, central domain YPK_0232 IPR035996 YPK_0232 YPK_0232 IPR036291 YPK_0232 YPK_0232 IPR037115 YPK_0232 YPK_0233 IPR000292 Formate/nitrite transporter YPK_0233 IPR023271 Aquaporin-like YPK_0233 IPR024002 Formate/nitrite transporter, conserved site YPK_0234 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD YPK_0234 IPR036922 YPK_0234 YPK_0235 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPK_0235 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site YPK_0235 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPK_0235 IPR007419 BFD-like [2Fe-2S]-binding domain YPK_0235 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB YPK_0235 IPR017121 Nitrite reductase [NAD(P)H], large subunit YPK_0235 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_0235 IPR036136 YPK_0235 YPK_0235 IPR036188 YPK_0235 YPK_0237 IPR011059 Metal-dependent hydrolase, composite domain YPK_0237 IPR013108 Amidohydrolase 3 YPK_0237 IPR032466 YPK_0237 YPK_0238 IPR011701 Major facilitator superfamily YPK_0238 IPR023528 Major facilitator superfamily transporter, TsgA YPK_0238 IPR036259 YPK_0238 YPK_0239 IPR000531 TonB-dependent receptor, beta-barrel YPK_0239 IPR010100 TonB-dependent copper receptor YPK_0239 IPR012910 TonB-dependent receptor, plug YPK_0239 IPR036942 YPK_0239 YPK_0239 IPR037066 YPK_0239 YPK_0240 IPR000843 Transcription regulator HTH, LacI YPK_0240 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0240 IPR028082 Periplasmic binding protein-like I YPK_0241 IPR001088 Glycoside hydrolase, family 4 YPK_0241 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPK_0241 IPR019802 Glycoside hydrolase, family 4, conserved site YPK_0241 IPR022616 Glycosyl hydrolase, family 4, C-terminal YPK_0241 IPR036291 YPK_0241 YPK_0242 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPK_0242 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPK_0242 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YPK_0242 IPR029000 Cyclophilin-like domain YPK_0243 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0243 IPR033186 YPK_0243 YPK_0244 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPK_0244 IPR017926 Glutamine amidotransferase YPK_0244 IPR029062 Class I glutamine amidotransferase-like YPK_0245 IPR004636 Acetylornithine/Succinylornithine transaminase family YPK_0245 IPR005814 Aminotransferase class-III YPK_0245 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_0245 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_0245 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0245 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPK_0247 IPR010020 Integral membrane protein, YccS/YhfK YPK_0247 IPR032692 YPK_0247 YPK_0248 IPR000595 Cyclic nucleotide-binding domain YPK_0248 IPR012318 Helix-turn-helix motif, Crp-type YPK_0248 IPR014710 RmlC-like jelly roll fold YPK_0248 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPK_0248 IPR018488 Cyclic nucleotide-binding, conserved site YPK_0248 IPR018490 Cyclic nucleotide-binding-like YPK_0248 IPR036388 YPK_0248 YPK_0248 IPR036390 YPK_0248 YPK_0249 IPR003718 OsmC/Ohr family YPK_0249 IPR015946 K homology domain-like, alpha/beta YPK_0249 IPR036102 YPK_0249 YPK_0251 IPR008514 Type VI secretion system effector, Hcp YPK_0251 IPR036624 YPK_0251 YPK_0253 IPR010665 Protein of unknown function DUF1240 YPK_0254 IPR006082 Phosphoribulokinase YPK_0254 IPR006083 Phosphoribulokinase/uridine kinase YPK_0254 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0255 IPR010648 Uncharacterised protein family UPF0270 YPK_0255 IPR036685 YPK_0255 YPK_0256 IPR000073 Alpha/beta hydrolase fold-1 YPK_0256 IPR000952 Uncharacterised protein family UPF0017, hydrolase-like, conserved site YPK_0256 IPR012020 AB-hydrolase YheT, putative YPK_0256 IPR029058 Alpha/Beta hydrolase fold YPK_0257 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPK_0258 IPR001638 Extracellular solute-binding protein, family 3 YPK_0258 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPK_0258 IPR010068 Taurine ABC transporter, periplasmic binding protein TauA YPK_0259 IPR003439 ABC transporter-like YPK_0259 IPR003593 AAA+ ATPase domain YPK_0259 IPR017871 ABC transporter, conserved site YPK_0259 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0260 IPR000515 MetI-like domain YPK_0260 IPR035906 YPK_0260 YPK_0261 IPR003819 Taurine catabolism dioxygenase TauD/TfdA YPK_0262 IPR002201 Glycosyl transferase, family 9 YPK_0263 IPR001173 Glycosyltransferase 2-like YPK_0263 IPR029044 Nucleotide-diphospho-sugar transferases YPK_0264 IPR003439 ABC transporter-like YPK_0264 IPR003593 AAA+ ATPase domain YPK_0264 IPR017871 ABC transporter, conserved site YPK_0264 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0264 IPR032781 YPK_0264 YPK_0265 IPR003680 Flavodoxin-like fold YPK_0265 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG YPK_0265 IPR029039 Flavoprotein-like YPK_0266 IPR003148 Regulator of K+ conductance, N-terminal YPK_0266 IPR004771 K+/H+ exchanger YPK_0266 IPR006153 Cation/H+ exchanger YPK_0266 IPR020884 Glutathione-regulated potassium-efflux system protein KefB YPK_0266 IPR036291 YPK_0266 YPK_0266 IPR038770 YPK_0266 YPK_0267 IPR012658 Conserved hypothetical protein CHP02443 YPK_0268 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPK_0269 IPR007236 SlyX YPK_0270 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPK_0270 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPK_0270 IPR036944 YPK_0270 YPK_0271 IPR013559 YheO-like YPK_0271 IPR039445 YPK_0271 YPK_0272 IPR003787 Sulphur relay, DsrE/F-like protein YPK_0272 IPR017463 Sulphur relay, TusD/DsrE YPK_0272 IPR027396 DsrEFH-like YPK_0273 IPR003787 Sulphur relay, DsrE/F-like protein YPK_0273 IPR017462 Sulphur relay, TusC/DsrF YPK_0273 IPR027396 DsrEFH-like YPK_0273 IPR037450 YPK_0273 YPK_0274 IPR007215 Sulphur relay, TusB/DsrH YPK_0274 IPR023526 Sulphur relay, TusB YPK_0274 IPR027396 DsrEFH-like YPK_0275 IPR005679 Ribosomal protein S12, bacteria YPK_0275 IPR006032 Ribosomal protein S12/S23 YPK_0275 IPR012340 Nucleic acid-binding, OB-fold YPK_0276 IPR000235 Ribosomal protein S5/S7 YPK_0276 IPR005717 Ribosomal protein S7, bacterial/organellar-type YPK_0276 IPR020606 Ribosomal protein S7, conserved site YPK_0276 IPR023798 Ribosomal protein S7 domain YPK_0276 IPR036823 YPK_0276 YPK_0277 IPR000640 Translation elongation factor EFG, V domain YPK_0277 IPR000795 Elongation factor, GTP-binding domain YPK_0277 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPK_0277 IPR004540 Translation elongation factor EFG/EF2 YPK_0277 IPR005225 Small GTP-binding protein domain YPK_0277 IPR005517 Translation elongation factor EFG/EF2, domain IV YPK_0277 IPR009000 Translation protein, beta-barrel domain YPK_0277 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0277 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0277 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0277 IPR031157 YPK_0277 YPK_0277 IPR035647 YPK_0277 YPK_0278 IPR000795 Elongation factor, GTP-binding domain YPK_0278 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPK_0278 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPK_0278 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPK_0278 IPR005225 Small GTP-binding protein domain YPK_0278 IPR009000 Translation protein, beta-barrel domain YPK_0278 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPK_0278 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0278 IPR031157 YPK_0278 YPK_0279 IPR002686 Transposase IS200-like YPK_0279 IPR036515 YPK_0279 YPK_0280 IPR007419 BFD-like [2Fe-2S]-binding domain YPK_0281 IPR002024 Bacterioferritin YPK_0281 IPR008331 Ferritin/DPS protein domain YPK_0281 IPR009078 Ferritin-like superfamily YPK_0281 IPR012347 Ferritin-related YPK_0282 IPR001848 Ribosomal protein S10 YPK_0282 IPR018268 Ribosomal protein S10, conserved site YPK_0282 IPR027486 Ribosomal protein S10 domain YPK_0282 IPR036838 YPK_0282 YPK_0283 IPR000597 Ribosomal protein L3 YPK_0283 IPR009000 Translation protein, beta-barrel domain YPK_0283 IPR019926 Ribosomal protein L3, conserved site YPK_0283 IPR019927 Ribosomal protein L3, bacterial/organelle-type YPK_0284 IPR002136 Ribosomal protein L4/L1e YPK_0284 IPR013005 Ribosomal protein L4/L1e, bacterial-type YPK_0284 IPR023574 Ribosomal protein L4 domain YPK_0285 IPR001014 Ribosomal protein L23/L25, conserved site YPK_0285 IPR012677 Nucleotide-binding, alpha-beta plait YPK_0285 IPR012678 Ribosomal protein L23/L15e core domain YPK_0285 IPR013025 Ribosomal protein L25/L23 YPK_0286 IPR002171 Ribosomal protein L2 YPK_0286 IPR005880 Ribosomal protein L2, bacterial/organellar-type YPK_0286 IPR008991 Translation protein SH3-like domain YPK_0286 IPR012340 Nucleic acid-binding, OB-fold YPK_0286 IPR014722 Ribosomal protein L2 domain 2 YPK_0286 IPR014726 Ribosomal protein L2, domain 3 YPK_0286 IPR022666 Ribosomal Proteins L2, RNA binding domain YPK_0286 IPR022669 Ribosomal protein L2, C-terminal YPK_0286 IPR022671 Ribosomal protein L2, conserved site YPK_0287 IPR002222 Ribosomal protein S19/S15 YPK_0287 IPR005732 Ribosomal protein S19, bacterial-type YPK_0287 IPR020934 Ribosomal protein S19 conserved site YPK_0287 IPR023575 Ribosomal protein S19, superfamily YPK_0288 IPR001063 Ribosomal protein L22/L17 YPK_0288 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type YPK_0288 IPR018260 Ribosomal protein L22/L17, conserved site YPK_0288 IPR036394 YPK_0288 YPK_0289 IPR001351 Ribosomal protein S3, C-terminal YPK_0289 IPR004044 K Homology domain, type 2 YPK_0289 IPR004087 K Homology domain YPK_0289 IPR005704 Ribosomal protein S3, bacterial YPK_0289 IPR009019 K homology domain, prokaryotic type YPK_0289 IPR015946 K homology domain-like, alpha/beta YPK_0289 IPR018280 Ribosomal protein S3, conserved site YPK_0289 IPR036419 YPK_0289 YPK_0290 IPR000114 Ribosomal protein L16 YPK_0290 IPR016180 Ribosomal protein L10e/L16 YPK_0290 IPR020798 Ribosomal protein L16, conserved site YPK_0290 IPR036920 YPK_0290 YPK_0291 IPR001854 Ribosomal protein L29 YPK_0291 IPR018254 Ribosomal protein L29, conserved site YPK_0291 IPR036049 YPK_0291 YPK_0292 IPR000266 Ribosomal protein S17 YPK_0292 IPR012340 Nucleic acid-binding, OB-fold YPK_0292 IPR019979 Ribosomal protein S17, conserved site YPK_0292 IPR019984 Ribosomal protein S17, bacterial-type YPK_0293 IPR000218 Ribosomal protein L14b/L23e YPK_0293 IPR005745 Ribosomal protein L14, bacterial-type YPK_0293 IPR019972 Ribosomal protein L14 conserved site YPK_0293 IPR036853 YPK_0293 YPK_0294 IPR003256 Ribosomal protein L24 YPK_0294 IPR005824 KOW YPK_0294 IPR005825 Ribosomal protein L24/L26, conserved site YPK_0294 IPR008991 Translation protein SH3-like domain YPK_0294 IPR014722 Ribosomal protein L2 domain 2 YPK_0295 IPR002132 Ribosomal protein L5 YPK_0295 IPR020930 Ribosomal protein L5, bacterial-type YPK_0295 IPR022803 Ribosomal protein L5 domain YPK_0295 IPR031309 YPK_0295 YPK_0295 IPR031310 YPK_0295 YPK_0296 IPR001209 Ribosomal protein S14 YPK_0296 IPR018271 Ribosomal protein S14, conserved site YPK_0296 IPR023036 Ribosomal protein S14, bacterial/plastid YPK_0297 IPR000630 Ribosomal protein S8 YPK_0297 IPR035987 YPK_0297 YPK_0298 IPR000702 Ribosomal protein L6 YPK_0298 IPR002358 Ribosomal protein L6, conserved site YPK_0298 IPR019906 Ribosomal protein L6, bacterial-type YPK_0298 IPR020040 Ribosomal protein L6, alpha-beta domain YPK_0298 IPR036789 YPK_0298 YPK_0299 IPR004389 Ribosomal protein L18, bacterial-type YPK_0299 IPR005484 Ribosomal protein L18/L5 YPK_0300 IPR005324 Ribosomal protein S5, C-terminal YPK_0300 IPR005712 Ribosomal protein S5, bacterial-type YPK_0300 IPR013810 Ribosomal protein S5, N-terminal YPK_0300 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0300 IPR018192 Ribosomal protein S5, N-terminal, conserved site YPK_0300 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0301 IPR005996 Ribosomal protein L30, bacterial-type YPK_0301 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain YPK_0301 IPR018038 Ribosomal protein L30, conserved site YPK_0301 IPR036919 YPK_0301 YPK_0302 IPR001196 Ribosomal protein L15, conserved site YPK_0302 IPR005749 Ribosomal protein L15, bacterial-type YPK_0302 IPR021131 Ribosomal protein L18e/L15P YPK_0302 IPR030878 YPK_0302 YPK_0302 IPR036227 YPK_0302 YPK_0303 IPR002208 SecY/SEC61-alpha family YPK_0303 IPR023201 SecY subunit domain YPK_0303 IPR026593 Protein translocase subunit SecY YPK_0303 IPR030659 YPK_0303 YPK_0304 IPR000473 Ribosomal protein L36 YPK_0304 IPR035977 YPK_0304 YPK_0305 IPR001892 Ribosomal protein S13 YPK_0305 IPR010979 Ribosomal protein S13-like, H2TH YPK_0305 IPR018269 Ribosomal protein S13, conserved site YPK_0305 IPR019980 Ribosomal protein S13, bacterial-type YPK_0305 IPR027437 30s ribosomal protein S13, C-terminal YPK_0306 IPR001971 Ribosomal protein S11 YPK_0306 IPR018102 Ribosomal S11, conserved site YPK_0306 IPR019981 Ribosomal protein S11, bacterial-type YPK_0306 IPR036967 YPK_0306 YPK_0307 IPR001912 Ribosomal protein S4/S9, N-terminal YPK_0307 IPR002942 RNA-binding S4 domain YPK_0307 IPR005709 Ribosomal protein S4, bacterial-type YPK_0307 IPR018079 Ribosomal protein S4, conserved site YPK_0307 IPR036986 YPK_0307 YPK_0308 IPR011260 RNA polymerase, alpha subunit, C-terminal YPK_0308 IPR011262 DNA-directed RNA polymerase, insert domain YPK_0308 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type YPK_0308 IPR011773 DNA-directed RNA polymerase, alpha subunit YPK_0308 IPR036603 YPK_0308 YPK_0308 IPR036643 YPK_0308 YPK_0309 IPR000456 Ribosomal protein L17 YPK_0309 IPR036373 YPK_0309 YPK_0310 IPR000551 MerR-type HTH domain YPK_0310 IPR009061 DNA binding domain, putative YPK_0310 IPR011788 Zn(II)-responsive transcriptional regulator YPK_0311 IPR005589 Protein of unknown function DUF331 YPK_0312 IPR001185 Large-conductance mechanosensitive channel YPK_0312 IPR019823 Large-conductance mechanosensitive channel, conserved site YPK_0312 IPR036019 YPK_0312 YPK_0312 IPR037673 YPK_0312 YPK_0313 IPR003148 Regulator of K+ conductance, N-terminal YPK_0313 IPR006036 Potassium uptake protein TrkA YPK_0313 IPR006037 Regulator of K+ conductance, C-terminal YPK_0313 IPR036291 YPK_0313 YPK_0313 IPR036721 YPK_0313 YPK_0314 IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p YPK_0314 IPR004573 rRNA small subunit methyltransferase B YPK_0314 IPR006027 NusB/RsmB/TIM44 YPK_0314 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site YPK_0314 IPR023267 RNA (C5-cytosine) methyltransferase YPK_0314 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae YPK_0314 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0314 IPR035926 YPK_0314 YPK_0315 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPK_0315 IPR002376 Formyl transferase, N-terminal YPK_0315 IPR005793 Formyl transferase, C-terminal YPK_0315 IPR005794 Methionyl-tRNA formyltransferase YPK_0315 IPR011034 Formyl transferase, C-terminal-like YPK_0315 IPR036477 YPK_0315 YPK_0315 IPR037022 YPK_0315 YPK_0316 IPR023635 Peptide deformylase YPK_0316 IPR036821 YPK_0316 YPK_0317 IPR003488 DNA recombination-mediator protein A YPK_0318 IPR007456 Protein of unknown function DUF494 YPK_0319 IPR013498 DNA topoisomerase, type IA, zn finger YPK_0320 IPR006070 YrdC-like domain YPK_0320 IPR017945 DHBP synthase RibB-like alpha/beta domain YPK_0320 IPR023535 Threonylcarbamoyl-AMP synthase YPK_0321 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPK_0321 IPR011342 Shikimate dehydrogenase YPK_0321 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPK_0321 IPR022893 Shikimate, quinate/shikimate dehydrogenase YPK_0321 IPR036291 YPK_0321 YPK_0322 IPR001451 Bacterial transferase hexapeptide repeat YPK_0322 IPR011004 Trimeric LpxA-like YPK_0326 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase YPK_0326 IPR006094 FAD linked oxidase, N-terminal YPK_0326 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal YPK_0326 IPR016167 FAD-binding, type 2, subdomain 1 YPK_0326 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_0326 IPR036318 YPK_0326 YPK_0326 IPR036635 YPK_0326 YPK_0327 IPR003142 Biotin protein ligase, C-terminal YPK_0327 IPR004143 Biotin/lipoate A/B protein ligase YPK_0327 IPR004408 Biotin--acetyl-CoA-carboxylase ligase YPK_0327 IPR004409 Biotin operon repressor, helix-turn-helix domain YPK_0327 IPR008988 Transcriptional repressor, C-terminal YPK_0327 IPR013196 Helix-turn-helix, type 11 YPK_0327 IPR030855 YPK_0327 YPK_0327 IPR036388 YPK_0327 YPK_0327 IPR036390 YPK_0327 YPK_0328 IPR004566 Bacterial pantothenate kinase YPK_0328 IPR006083 Phosphoribulokinase/uridine kinase YPK_0328 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0329 IPR000182 GNAT domain YPK_0329 IPR016181 Acyl-CoA N-acyltransferase YPK_0332 IPR000795 Elongation factor, GTP-binding domain YPK_0332 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPK_0332 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPK_0332 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YPK_0332 IPR005225 Small GTP-binding protein domain YPK_0332 IPR009000 Translation protein, beta-barrel domain YPK_0332 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPK_0332 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0332 IPR031157 YPK_0332 YPK_0333 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit YPK_0333 IPR005807 SecE subunit of protein translocation complex YPK_0333 IPR038379 YPK_0333 YPK_0334 IPR001062 Transcription antitermination protein, NusG YPK_0334 IPR005824 KOW YPK_0334 IPR006645 NusG, N-terminal YPK_0334 IPR008991 Translation protein SH3-like domain YPK_0334 IPR014722 Ribosomal protein L2 domain 2 YPK_0334 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YPK_0334 IPR036735 YPK_0334 YPK_0335 IPR000911 Ribosomal protein L11/L12 YPK_0335 IPR006519 Ribosomal protein L11, bacterial-type YPK_0335 IPR020783 Ribosomal protein L11, C-terminal YPK_0335 IPR020784 Ribosomal protein L11, N-terminal YPK_0335 IPR020785 Ribosomal protein L11, conserved site YPK_0335 IPR036769 YPK_0335 YPK_0335 IPR036796 YPK_0335 YPK_0336 IPR002143 Ribosomal protein L1 YPK_0336 IPR005878 Ribosomal protein L1, bacterial-type YPK_0336 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YPK_0336 IPR023673 Ribosomal protein L1, conserved site YPK_0336 IPR023674 Ribosomal protein L1-like YPK_0336 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YPK_0337 IPR001790 Ribosomal protein L10/acidic P0 YPK_0337 IPR002363 Ribosomal protein L10, eubacterial, conserved site YPK_0337 IPR022973 Ribosomal protein L10 YPK_0338 IPR000206 Ribosomal protein L7/L12 YPK_0338 IPR008932 Ribosomal protein L7/L12, oligomerisation YPK_0338 IPR013823 Ribosomal protein L7/L12, C-terminal YPK_0338 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPK_0338 IPR036235 YPK_0338 YPK_0340 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 YPK_0340 IPR007121 RNA polymerase, beta subunit, conserved site YPK_0340 IPR007641 RNA polymerase Rpb2, domain 7 YPK_0340 IPR007642 RNA polymerase Rpb2, domain 2 YPK_0340 IPR007644 RNA polymerase, beta subunit, protrusion YPK_0340 IPR007645 RNA polymerase Rpb2, domain 3 YPK_0340 IPR010243 DNA-directed RNA polymerase, beta subunit YPK_0340 IPR014724 RNA polymerase Rpb2, OB-fold YPK_0340 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain YPK_0340 IPR037033 YPK_0340 YPK_0340 IPR037034 YPK_0340 YPK_0341 IPR000722 RNA polymerase, alpha subunit YPK_0341 IPR006592 RNA polymerase, N-terminal YPK_0341 IPR007066 RNA polymerase Rpb1, domain 3 YPK_0341 IPR007080 RNA polymerase Rpb1, domain 1 YPK_0341 IPR007081 RNA polymerase Rpb1, domain 5 YPK_0341 IPR007083 RNA polymerase Rpb1, domain 4 YPK_0341 IPR012754 DNA-directed RNA polymerase, subunit beta-prime YPK_0341 IPR038120 YPK_0341 YPK_0342 IPR007197 Radical SAM YPK_0342 IPR010722 Biotin and thiamin synthesis-associated domain YPK_0342 IPR012726 Thiazole biosynthesis ThiH YPK_0342 IPR013785 Aldolase-type TIM barrel YPK_0343 IPR008867 Thiazole biosynthesis YPK_0343 IPR013785 Aldolase-type TIM barrel YPK_0343 IPR033983 YPK_0343 YPK_0344 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 YPK_0344 IPR010035 ThiS, thiamine-biosynthesis YPK_0344 IPR012675 Beta-grasp domain YPK_0344 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPK_0345 IPR000594 UBA/THIF-type NAD/FAD binding fold YPK_0345 IPR035985 YPK_0345 YPK_0346 IPR013785 Aldolase-type TIM barrel YPK_0346 IPR022998 Thiamin phosphate synthase superfamily YPK_0346 IPR034291 YPK_0346 YPK_0346 IPR036206 YPK_0346 YPK_0347 IPR002817 Thiamine biosynthesis protein ThiC YPK_0347 IPR025747 ThiC-associated domain YPK_0347 IPR037509 YPK_0347 YPK_0347 IPR038521 YPK_0347 YPK_0348 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPK_0348 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YPK_0348 IPR038309 YPK_0348 YPK_0349 IPR000086 NUDIX hydrolase domain YPK_0349 IPR015376 Zinc ribbon, NADH pyrophosphatase YPK_0349 IPR015797 NUDIX hydrolase domain-like YPK_0349 IPR020084 NUDIX hydrolase, conserved site YPK_0349 IPR022925 NADH pyrophosphatase NudC YPK_0351 IPR000257 Uroporphyrinogen decarboxylase (URO-D) YPK_0351 IPR006361 Uroporphyrinogen decarboxylase HemE YPK_0351 IPR038071 YPK_0351 YPK_0352 IPR007581 Endonuclease V YPK_0353 IPR007338 Protein of unknown function DUF416 YPK_0353 IPR023381 YP001051499.1-like domain YPK_0354 IPR000119 Histone-like bacterial DNA-binding protein YPK_0354 IPR010992 Integration host factor (IHF)-like DNA-binding domain YPK_0354 IPR020816 Histone-like DNA-binding protein, conserved site YPK_0355 IPR010858 Protein of unknown function DUF1481 YPK_0355 IPR016500 Uncharacterised conserved protein UCP006993 YPK_0356 IPR000115 Phosphoribosylglycinamide synthetase YPK_0356 IPR011054 Rudiment single hybrid motif YPK_0356 IPR013815 ATP-grasp fold, subdomain 1 YPK_0356 IPR016185 Pre-ATP-grasp domain YPK_0356 IPR020559 Phosphoribosylglycinamide synthetase, conserved site YPK_0356 IPR020560 Phosphoribosylglycinamide synthetase, C-domain YPK_0356 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPK_0356 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal YPK_0356 IPR037123 YPK_0356 YPK_0357 IPR002695 AICARFT/IMPCHase bienzyme YPK_0357 IPR011607 Methylglyoxal synthase-like domain YPK_0357 IPR016193 Cytidine deaminase-like YPK_0357 IPR024051 AICAR transformylase domain YPK_0357 IPR036914 YPK_0357 YPK_0363 IPR005697 Homoserine O-succinyltransferase YPK_0363 IPR029062 Class I glutamine amidotransferase-like YPK_0363 IPR033752 YPK_0363 YPK_0364 IPR001465 Malate synthase YPK_0364 IPR006252 Malate synthase A YPK_0364 IPR011076 Malate synthase-like YPK_0365 IPR006254 Isocitrate lyase YPK_0365 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_0365 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site YPK_0366 IPR010452 Isocitrate dehydrogenase kinasephosphatase YPK_0367 IPR005471 Transcription regulator IclR, N-terminal YPK_0367 IPR014757 Transcription regulator IclR, C-terminal YPK_0367 IPR029016 GAF domain-like YPK_0367 IPR036388 YPK_0367 YPK_0367 IPR036390 YPK_0367 YPK_0368 IPR000489 Pterin-binding YPK_0368 IPR003726 Homocysteine S-methyltransferase YPK_0368 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain YPK_0368 IPR004223 Vitamin B12-dependent methionine synthase, activation domain YPK_0368 IPR006158 Cobalamin (vitamin B12)-binding domain YPK_0368 IPR011005 Dihydropteroate synthase-like YPK_0368 IPR011822 Cobalamin-dependent methionine synthase YPK_0368 IPR036589 YPK_0368 YPK_0368 IPR036594 YPK_0368 YPK_0368 IPR036724 YPK_0368 YPK_0368 IPR037010 YPK_0368 YPK_0369 IPR025157 Haemagluttinin repeat YPK_0372 IPR001048 Aspartate/glutamate/uridylate kinase YPK_0372 IPR001341 Aspartate kinase domain YPK_0372 IPR005260 Aspartate kinase, monofunctional class YPK_0372 IPR018042 Aspartate kinase, conserved site YPK_0372 IPR036393 YPK_0372 YPK_0373 IPR001672 Phosphoglucose isomerase (PGI) YPK_0373 IPR018189 Phosphoglucose isomerase, conserved site YPK_0373 IPR023096 Phosphoglucose isomerase, C-terminal YPK_0375 IPR009315 Phosphate-starvation-induced PsiE YPK_0375 IPR020948 Phosphate-starvation-induced PsiE-like YPK_0376 IPR000515 MetI-like domain YPK_0376 IPR035906 YPK_0376 YPK_0377 IPR000515 MetI-like domain YPK_0377 IPR029345 Maltose transport system permease protein MalF, P2 domain YPK_0377 IPR035277 YPK_0377 YPK_0377 IPR035906 YPK_0377 YPK_0378 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_0378 IPR006060 Maltose binding protein YPK_0378 IPR006061 Bacterial extracellular solute-binding family 1, conserved site YPK_0380 IPR003439 ABC transporter-like YPK_0380 IPR003593 AAA+ ATPase domain YPK_0380 IPR008995 Molybdate/tungstate binding, C-terminal YPK_0380 IPR013611 Transport-associated OB, type 2 YPK_0380 IPR017871 ABC transporter, conserved site YPK_0380 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0381 IPR003192 Porin, LamB type YPK_0381 IPR023738 Maltoporin YPK_0381 IPR036998 YPK_0381 YPK_0382 IPR010794 Maltose operon periplasmic YPK_0385 IPR008514 Type VI secretion system effector, Hcp YPK_0385 IPR036624 YPK_0385 YPK_0386 IPR008312 Uncharacterised conserved protein UCP028301 YPK_0387 IPR010269 Protein of unknown function DUF877 YPK_0388 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_0388 IPR017737 Type VI secretion system, lysozyme-related protein YPK_0389 IPR010272 Type VI secretion system, VCA0110 YPK_0390 IPR010732 Protein of unknown function DUF1305 YPK_0391 IPR008984 SMAD/FHA domain YPK_0391 IPR017735 Type VI secretion system, FHA domain-containing protein YPK_0392 IPR017734 Type VI secretion system, lipoprotein SciN YPK_0392 IPR038706 YPK_0392 YPK_0393 IPR010263 Protein of unknown function DUF876 YPK_0394 IPR017732 Type IV / VI secretion system, DotU YPK_0394 IPR038522 YPK_0394 YPK_0395 IPR001270 ClpA/B family YPK_0395 IPR003593 AAA+ ATPase domain YPK_0395 IPR003959 ATPase, AAA-type, core YPK_0395 IPR017729 Type VI secretion system, ATPase ClpV1 YPK_0395 IPR018368 ClpA/B, conserved site 1 YPK_0395 IPR019489 Clp ATPase, C-terminal YPK_0395 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0395 IPR028299 ClpA/B, conserved site 2 YPK_0395 IPR036628 YPK_0395 YPK_0396 IPR002197 DNA binding HTH domain, Fis-type YPK_0396 IPR009057 Homeodomain-like YPK_0397 IPR017738 Type VI secretion system-associated, VCA0118 YPK_0398 IPR010657 ImpA, N-terminal YPK_0398 IPR017739 Type VI secretion system-associated, VCA0119 YPK_0399 IPR009612 ImcF-related YPK_0399 IPR010623 Domain of unknown function DUF1215 YPK_0399 IPR017731 Type VI secretion system, IcmF YPK_0399 IPR025743 ImcF-related, N-terminal domain YPK_0399 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0400 IPR010657 ImpA, N-terminal YPK_0400 IPR021069 ImpA, C-terminal YPK_0401 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_0401 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_0401 IPR037026 YPK_0401 YPK_0402 IPR014894 Protein DcrB YPK_0402 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPK_0403 IPR001826 RHS protein YPK_0403 IPR006530 YD repeat YPK_0403 IPR008727 PAAR motif YPK_0403 IPR022385 Rhs repeat-associated core YPK_0403 IPR031325 YPK_0403 YPK_0406 IPR029278 Immunity protein 14 YPK_0407 IPR014944 Toxin SymE-like YPK_0408 IPR021069 ImpA, C-terminal YPK_0410 IPR001826 RHS protein YPK_0410 IPR006530 YD repeat YPK_0410 IPR022385 Rhs repeat-associated core YPK_0410 IPR031325 YPK_0410 YPK_0413 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_0413 IPR036237 YPK_0413 YPK_0414 IPR000683 Oxidoreductase, N-terminal YPK_0414 IPR036291 YPK_0414 YPK_0415 IPR003313 AraC-type arabinose-binding/dimerisation domain YPK_0415 IPR009057 Homeodomain-like YPK_0415 IPR014710 RmlC-like jelly roll fold YPK_0415 IPR018060 DNA binding HTH domain, AraC-type YPK_0415 IPR020449 Transcription regulator HTH, AraC- type YPK_0415 IPR037923 YPK_0415 YPK_0416 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPK_0416 IPR023750 RbsD-like domain YPK_0417 IPR002139 Ribokinase YPK_0417 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPK_0417 IPR011611 Carbohydrate kinase PfkB YPK_0417 IPR011877 Ribokinase, bacterial YPK_0417 IPR029056 Ribokinase-like YPK_0418 IPR002915 DeoC/FbaB/ lacD aldolase YPK_0418 IPR011343 Deoxyribose-phosphate aldolase YPK_0418 IPR013785 Aldolase-type TIM barrel YPK_0421 IPR001638 Extracellular solute-binding protein, family 3 YPK_0421 IPR010067 ABC transporter, substrate-binding protein, aliphatic sulphonates YPK_0421 IPR015168 SsuA/THI5-like YPK_0422 IPR011251 Luciferase-like domain YPK_0422 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent YPK_0422 IPR036661 YPK_0422 YPK_0423 IPR000515 MetI-like domain YPK_0423 IPR035906 YPK_0423 YPK_0424 IPR003439 ABC transporter-like YPK_0424 IPR003593 AAA+ ATPase domain YPK_0424 IPR017871 ABC transporter, conserved site YPK_0424 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0425 IPR007337 RelB antitoxin/Antitoxin DinJ YPK_0425 IPR026262 Antitoxin DinJ YPK_0426 IPR006043 Xanthine/uracil/vitamin C permease YPK_0427 IPR001207 Transposase, mutator type YPK_0428 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria YPK_0428 IPR006153 Cation/H+ exchanger YPK_0430 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPK_0430 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPK_0430 IPR030857 YPK_0430 YPK_0431 IPR025997 Periplasmic binding protein domain YPK_0431 IPR028082 Periplasmic binding protein-like I YPK_0432 IPR003439 ABC transporter-like YPK_0432 IPR003593 AAA+ ATPase domain YPK_0432 IPR017871 ABC transporter, conserved site YPK_0432 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0433 IPR001851 ABC transporter, permease YPK_0434 IPR001851 ABC transporter, permease YPK_0435 IPR000577 YPK_0435 YPK_0435 IPR006003 Carbohydrate kinase, FGGY-related YPK_0435 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_0435 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_0436 IPR001347 Sugar isomerase (SIS) YPK_0437 IPR004045 Glutathione S-transferase, N-terminal YPK_0437 IPR036249 YPK_0437 YPK_0437 IPR036282 YPK_0437 YPK_0438 IPR027372 Phytase-like domain YPK_0440 IPR036869 YPK_0440 YPK_0442 IPR002059 Cold-shock protein, DNA-binding YPK_0442 IPR011129 Cold shock protein YPK_0442 IPR012156 Cold shock, CspA YPK_0442 IPR012340 Nucleic acid-binding, OB-fold YPK_0442 IPR019844 Cold-shock conserved site YPK_0443 IPR002059 Cold-shock protein, DNA-binding YPK_0443 IPR011129 Cold shock protein YPK_0443 IPR012156 Cold shock, CspA YPK_0443 IPR012340 Nucleic acid-binding, OB-fold YPK_0443 IPR019844 Cold-shock conserved site YPK_0444 IPR002059 Cold-shock protein, DNA-binding YPK_0444 IPR011129 Cold shock protein YPK_0444 IPR012156 Cold shock, CspA YPK_0444 IPR012340 Nucleic acid-binding, OB-fold YPK_0444 IPR019844 Cold-shock conserved site YPK_0445 IPR008816 Glycine zipper 2TM domain YPK_0446 IPR001279 Beta-lactamase-like YPK_0446 IPR036866 YPK_0446 YPK_0447 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site YPK_0447 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPK_0447 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_0447 IPR013328 Dehydrogenase, multihelical YPK_0447 IPR015815 Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type YPK_0447 IPR029154 NADP-dependent 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain YPK_0447 IPR036291 YPK_0447 YPK_0448 IPR003779 Carboxymuconolactone decarboxylase-like YPK_0448 IPR029032 AhpD-like YPK_0449 IPR005829 Sugar transporter, conserved site YPK_0449 IPR011701 Major facilitator superfamily YPK_0449 IPR036259 YPK_0449 YPK_0450 IPR000524 Transcription regulator HTH, GntR YPK_0450 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_0450 IPR011711 GntR, C-terminal YPK_0450 IPR036388 YPK_0450 YPK_0450 IPR036390 YPK_0450 YPK_0452 IPR002197 DNA binding HTH domain, Fis-type YPK_0452 IPR005412 DNA-binding protein Fis YPK_0452 IPR009057 Homeodomain-like YPK_0453 IPR001269 tRNA-dihydrouridine synthase YPK_0453 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YPK_0453 IPR013785 Aldolase-type TIM barrel YPK_0453 IPR018517 tRNA-dihydrouridine synthase, conserved site YPK_0453 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal YPK_0453 IPR032887 YPK_0453 YPK_0454 IPR004498 Ribosomal protein L11 methyltransferase YPK_0454 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0455 IPR001734 Sodium/solute symporter YPK_0455 IPR011849 Sodium/pantothenate symporter YPK_0455 IPR018212 Sodium/solute symporter, conserved site YPK_0455 IPR038377 YPK_0455 YPK_0456 IPR010398 Protein of unknown function DUF997 YPK_0458 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase YPK_0458 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPK_0458 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal YPK_0458 IPR005482 Biotin carboxylase, C-terminal YPK_0458 IPR011054 Rudiment single hybrid motif YPK_0458 IPR013815 ATP-grasp fold, subdomain 1 YPK_0458 IPR016185 Pre-ATP-grasp domain YPK_0459 IPR000089 Biotin/lipoyl attachment YPK_0459 IPR001249 Acetyl-CoA biotin carboxyl carrier YPK_0459 IPR001882 Biotin-binding site YPK_0459 IPR011053 Single hybrid motif YPK_0460 IPR001874 Dehydroquinase, class II YPK_0460 IPR018509 Dehydroquinase, class II, conserved site YPK_0460 IPR036441 YPK_0460 YPK_0461 IPR013130 Ferric reductase transmembrane component-like domain YPK_0461 IPR022837 Sulphoxide reductase heme-binding subunit YedZ YPK_0462 IPR000572 Oxidoreductase, molybdopterin-binding domain YPK_0462 IPR022867 Sulphoxide reductase catalytic subunit YedY YPK_0462 IPR036374 YPK_0462 YPK_0463 IPR011032 GroES (chaperonin 10)-like YPK_0463 IPR013149 Alcohol dehydrogenase, C-terminal YPK_0463 IPR013154 Alcohol dehydrogenase GroES-like YPK_0463 IPR014188 Acrylyl-CoA reductase AcuI YPK_0463 IPR020843 Polyketide synthase, enoylreductase YPK_0463 IPR036291 YPK_0463 YPK_0464 IPR000160 GGDEF domain YPK_0464 IPR001633 EAL domain YPK_0464 IPR029787 Nucleotide cyclase YPK_0464 IPR033423 YPK_0464 YPK_0464 IPR035919 YPK_0464 YPK_0465 IPR004753 Cell shape determining protein MreB/Mrl YPK_0466 IPR007221 Rod shape-determining protein MreC YPK_0467 IPR007227 Cell shape-determining protein MreD YPK_0467 IPR026034 Cell shape-determining protein MreD, proteobacterial type YPK_0468 IPR003697 Maf-like protein YPK_0468 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_0469 IPR003029 Ribosomal protein S1, RNA-binding domain YPK_0469 IPR004659 Ribonuclease E/G YPK_0469 IPR012340 Nucleic acid-binding, OB-fold YPK_0469 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPK_0469 IPR022967 RNA-binding domain, S1 YPK_0470 IPR011836 Conserved hypothetical protein CHP02099 YPK_0470 IPR025263 Domain of unknown function DUF3971 YPK_0470 IPR032712 YPK_0470 YPK_0471 IPR001110 Uncharacterised protein family UPF0012, conserved site YPK_0471 IPR003010 Carbon-nitrogen hydrolase YPK_0471 IPR036526 YPK_0471 YPK_0472 IPR002510 TldD/PmbA YPK_0472 IPR025502 TldD YPK_0472 IPR035068 YPK_0472 YPK_0472 IPR036059 YPK_0472 YPK_0473 IPR006530 YD repeat YPK_0473 IPR016130 Protein-tyrosine phosphatase, active site YPK_0473 IPR022385 Rhs repeat-associated core YPK_0473 IPR029021 Protein-tyrosine phosphatase-like YPK_0475 IPR022538 Protein of unknown function DUF2570 YPK_0476 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPK_0476 IPR039561 YPK_0476 YPK_0477 IPR032126 YPK_0477 YPK_0478 IPR003284 Salmonella virulence plasmid 65kDa B protein YPK_0478 IPR022044 Insecticide toxin TcdB middle/C-terminal YPK_0478 IPR022045 Insecticide toxin TcdB middle/N-terminal YPK_0480 IPR018003 Insecticidal toxin complex/plasmid virulence protein YPK_0481 IPR000847 Transcription regulator HTH, LysR YPK_0481 IPR036388 YPK_0481 YPK_0481 IPR036390 YPK_0481 YPK_0482 IPR000847 Transcription regulator HTH, LysR YPK_0482 IPR005119 LysR, substrate-binding YPK_0482 IPR036388 YPK_0482 YPK_0482 IPR036390 YPK_0482 YPK_0483 IPR012451 Protein of unknown function DUF1656 YPK_0484 IPR006143 RND efflux pump, membrane fusion protein YPK_0484 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YPK_0484 IPR039562 YPK_0484 YPK_0485 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPK_0485 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB YPK_0486 IPR010102 Succinate semialdehyde dehydrogenase YPK_0486 IPR015590 Aldehyde dehydrogenase domain YPK_0486 IPR016160 Aldehyde dehydrogenase, cysteine active site YPK_0486 IPR016161 Aldehyde/histidinol dehydrogenase YPK_0486 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_0486 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_0486 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPK_0487 IPR000026 Guanine-specific ribonuclease N1/T1 YPK_0487 IPR001887 Barnase YPK_0487 IPR016191 Ribonuclease/ribotoxin YPK_0488 IPR000468 Barstar (barnase inhibitor) YPK_0488 IPR035905 YPK_0488 YPK_0489 IPR006839 Ribosome-associated, YjgA YPK_0489 IPR023153 PSPTO4464-like domain YPK_0490 IPR002510 TldD/PmbA YPK_0490 IPR035068 YPK_0490 YPK_0490 IPR036059 YPK_0490 YPK_0492 IPR009155 Cytochrome b562 YPK_0492 IPR010980 Cytochrome c/b562 YPK_0493 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPK_0493 IPR023459 Transcription elongation factor GreA/GreB family YPK_0493 IPR028625 Regulator of nucleoside diphosphate kinase YPK_0493 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YPK_0493 IPR036953 YPK_0493 YPK_0494 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPK_0494 IPR012769 Trehalose-6-phosphate hydrolase YPK_0494 IPR013780 Glycosyl hydrolase, family 13, all-beta YPK_0494 IPR017853 Glycoside hydrolase, superfamily YPK_0494 IPR022567 Domain of unknown function DUF3459 YPK_0495 IPR001996 Phosphotransferase system, IIB component, type 1 YPK_0495 IPR003352 Phosphotransferase system, EIIC YPK_0495 IPR011296 Phosphotransferase system, trehalose-specific IIBC component YPK_0495 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPK_0495 IPR036878 YPK_0495 YPK_0496 IPR000843 Transcription regulator HTH, LacI YPK_0496 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0496 IPR012771 Trehalose operon repressor YPK_0496 IPR028082 Periplasmic binding protein-like I YPK_0497 IPR031948 YPK_0497 YPK_0497 IPR038643 YPK_0497 YPK_0498 IPR006056 Enamine/imine deaminase YjgF-like YPK_0498 IPR006175 YjgF/Yer057p/UK114 family YPK_0498 IPR019897 YjgF-like protein, conserved site YPK_0498 IPR035959 YPK_0498 YPK_0499 IPR002801 Aspartate transcarbamylase regulatory subunit YPK_0499 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YPK_0499 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YPK_0499 IPR036792 YPK_0499 YPK_0499 IPR036793 YPK_0499 YPK_0500 IPR002082 Aspartate carbamoyltransferase YPK_0500 IPR006130 Aspartate/ornithine carbamoyltransferase YPK_0500 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPK_0500 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPK_0500 IPR036901 YPK_0500 YPK_0501 IPR000032 Phosphocarrier HPr protein-like YPK_0501 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPK_0501 IPR035895 YPK_0501 YPK_0502 IPR005337 ATPase, P-loop-containing YPK_0502 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0503 IPR002178 PTS EIIA type-2 domain YPK_0503 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN YPK_0503 IPR016152 Phosphotransferase/anion transporter YPK_0504 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein YPK_0504 IPR036567 YPK_0504 YPK_0505 IPR000394 RNA polymerase sigma factor 54 YPK_0505 IPR007046 RNA polymerase sigma factor 54, core-binding YPK_0505 IPR007634 RNA polymerase sigma factor 54, DNA-binding YPK_0505 IPR038709 YPK_0505 YPK_0506 IPR003439 ABC transporter-like YPK_0506 IPR003593 AAA+ ATPase domain YPK_0506 IPR017871 ABC transporter, conserved site YPK_0506 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0506 IPR030921 YPK_0506 YPK_0506 IPR032823 YPK_0506 YPK_0507 IPR005653 Organic solvent tolerance-like, N-terminal YPK_0507 IPR014340 Lipopolysaccharide assembly, LptA YPK_0508 IPR010664 Lipopolysaccharide assembly, LptC-related YPK_0508 IPR026265 Lipopolysaccharide export system protein LptC YPK_0509 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YPK_0509 IPR023214 HAD-like domain YPK_0509 IPR036412 YPK_0509 YPK_0510 IPR000644 CBS domain YPK_0510 IPR001347 Sugar isomerase (SIS) YPK_0510 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type YPK_0511 IPR004481 Sodium/potassium/calcium exchanger YPK_0511 IPR004837 Sodium/calcium exchanger membrane region YPK_0512 IPR003439 ABC transporter-like YPK_0512 IPR003593 AAA+ ATPase domain YPK_0512 IPR017871 ABC transporter, conserved site YPK_0512 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0513 IPR003453 Permease domain YPK_0513 IPR030802 YPK_0513 YPK_0514 IPR003399 Mammalian cell entry-related YPK_0514 IPR030970 YPK_0514 YPK_0515 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YPK_0516 IPR002645 STAS domain YPK_0516 IPR036513 YPK_0516 YPK_0517 IPR002634 BolA protein YPK_0517 IPR036065 YPK_0517 YPK_0518 IPR001986 Enolpyruvate transferase domain YPK_0518 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YPK_0518 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPK_0518 IPR036968 YPK_0518 YPK_0519 IPR001478 PDZ domain YPK_0519 IPR001940 Peptidase S1C YPK_0519 IPR009003 Trypsin-like cysteine/serine peptidase domain YPK_0519 IPR011783 Peptidase S1C, DegS YPK_0519 IPR036034 YPK_0519 YPK_0520 IPR001478 PDZ domain YPK_0520 IPR001940 Peptidase S1C YPK_0520 IPR009003 Trypsin-like cysteine/serine peptidase domain YPK_0520 IPR011782 Peptidase S1C, Do YPK_0520 IPR036034 YPK_0520 YPK_0521 IPR009386 Protein of unknown function DUF1043 YPK_0523 IPR005654 ATPase, AFG1-like YPK_0523 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0523 IPR030870 YPK_0523 YPK_0524 IPR005822 Ribosomal protein L13 YPK_0524 IPR005823 Ribosomal protein L13, bacterial-type YPK_0524 IPR023563 Ribosomal protein L13, conserved site YPK_0524 IPR036899 YPK_0524 YPK_0525 IPR000754 Ribosomal protein S9 YPK_0525 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0525 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0525 IPR020574 Ribosomal protein S9, conserved site YPK_0525 IPR023035 Ribosomal protein S9, bacterial/plastid YPK_0526 IPR004045 Glutathione S-transferase, N-terminal YPK_0526 IPR004046 Glutathione S-transferase, C-terminal YPK_0526 IPR036249 YPK_0526 YPK_0526 IPR036282 YPK_0526 YPK_0527 IPR007481 Stringent starvation protein B YPK_0527 IPR036760 YPK_0527 YPK_0529 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPK_0529 IPR009051 Alpha-helical ferredoxin YPK_0529 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_0529 IPR028261 Dihydroprymidine dehydrogenase domain II YPK_0529 IPR036188 YPK_0529 YPK_0530 IPR002489 Glutamate synthase, alpha subunit, C-terminal YPK_0530 IPR002932 Glutamate synthase domain YPK_0530 IPR006982 Glutamate synthase, central-N YPK_0530 IPR013785 Aldolase-type TIM barrel YPK_0530 IPR017932 Glutamine amidotransferase type 2 domain YPK_0530 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_0530 IPR036485 YPK_0530 YPK_0531 IPR005911 Conserved hypothetical protein CHP01212 YPK_0531 IPR006638 Elongator protein 3/MiaB/NifB YPK_0531 IPR007197 Radical SAM YPK_0531 IPR023404 Radical SAM, alpha/beta horseshoe YPK_0531 IPR032432 YPK_0531 YPK_0533 IPR000014 PAS domain YPK_0533 IPR001789 Signal transduction response regulator, receiver domain YPK_0533 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_0533 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_0533 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_0533 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPK_0533 IPR011006 CheY-like superfamily YPK_0533 IPR013767 PAS fold YPK_0533 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB YPK_0533 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain YPK_0533 IPR035965 YPK_0533 YPK_0533 IPR036097 YPK_0533 YPK_0533 IPR036641 YPK_0533 YPK_0533 IPR036890 YPK_0533 YPK_0534 IPR026041 Enhancing lycopene biosynthesis protein 2 YPK_0534 IPR029062 Class I glutamine amidotransferase-like YPK_0535 IPR001264 Glycosyl transferase, family 51 YPK_0535 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase YPK_0535 IPR023346 Lysozyme-like domain YPK_0535 IPR036950 YPK_0535 YPK_0536 IPR007055 BON domain YPK_0536 IPR014004 Transport-associated and nodulation domain, bacteria YPK_0537 IPR001347 Sugar isomerase (SIS) YPK_0537 IPR023070 DnaA initiator-associating protein YPK_0538 IPR003509 Uncharacterised protein family UPF0102 YPK_0538 IPR011335 Restriction endonuclease type II-like YPK_0538 IPR011856 tRNA endonuclease-like domain YPK_0539 IPR007443 Penicillin-binding protein activator LpoA YPK_0539 IPR011990 Tetratricopeptide-like helical domain YPK_0539 IPR028082 Periplasmic binding protein-like I YPK_0540 IPR000878 Tetrapyrrole methylase YPK_0540 IPR008189 rRNA small subunit methyltransferase I YPK_0540 IPR014776 Tetrapyrrole methylase, subdomain 2 YPK_0540 IPR014777 Tetrapyrrole methylase, subdomain 1 YPK_0540 IPR018063 SAM-dependent methyltransferase RsmI, conserved site YPK_0540 IPR035996 YPK_0540 YPK_0541 IPR003829 Pirin, N-terminal domain YPK_0541 IPR011051 RmlC-like cupin domain YPK_0541 IPR012093 Pirin YPK_0541 IPR014710 RmlC-like jelly roll fold YPK_0542 IPR000847 Transcription regulator HTH, LysR YPK_0542 IPR005119 LysR, substrate-binding YPK_0542 IPR036388 YPK_0542 YPK_0542 IPR036390 YPK_0542 YPK_0543 IPR004045 Glutathione S-transferase, N-terminal YPK_0543 IPR016639 Glutathione S-transferase (GST) YPK_0543 IPR036249 YPK_0543 YPK_0543 IPR036282 YPK_0543 YPK_0544 IPR032808 YPK_0544 YPK_0545 IPR025612 YqjK-like protein YPK_0546 IPR009937 Protein of unknown function DUF1469 YPK_0547 IPR010279 Protein of unknown function DUF883, ElaB YPK_0548 IPR009468 Protein of unknown function DUF1090 YPK_0549 IPR026574 Modulator protein MzrA YPK_0549 IPR027398 SecD export protein N-terminal TM domain YPK_0550 IPR032816 YPK_0550 YPK_0552 IPR000524 Transcription regulator HTH, GntR YPK_0552 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_0552 IPR011711 GntR, C-terminal YPK_0552 IPR036388 YPK_0552 YPK_0552 IPR036390 YPK_0552 YPK_0553 IPR000849 Sugar phosphate transporter YPK_0553 IPR011701 Major facilitator superfamily YPK_0553 IPR036259 YPK_0553 YPK_0554 IPR003766 Uronate isomerase YPK_0554 IPR032466 YPK_0554 YPK_0555 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_0555 IPR013118 Mannitol dehydrogenase, C-terminal YPK_0555 IPR013131 Mannitol dehydrogenase, N-terminal YPK_0555 IPR013328 Dehydrogenase, multihelical YPK_0555 IPR036291 YPK_0555 YPK_0556 IPR007392 D-galactarate dehydratase/Altronate hydrolase, C-terminal YPK_0556 IPR013974 SAF domain YPK_0557 IPR019629 Uncharacterised protein family HI1736/YgjV YPK_0557 IPR026267 Inner membrane protein YgjV YPK_0558 IPR001991 Sodium:dicarboxylate symporter YPK_0558 IPR023025 Serine/threonine transporter SstT YPK_0558 IPR036458 YPK_0558 YPK_0559 IPR000683 Oxidoreductase, N-terminal YPK_0559 IPR036291 YPK_0559 YPK_0560 IPR002725 Protein of unknown function DUF45 YPK_0561 IPR004899 Pertactin, central region YPK_0561 IPR005546 Autotransporter beta-domain YPK_0561 IPR006315 Outer membrane autotransporter barrel YPK_0561 IPR011050 Pectin lyase fold/virulence factor YPK_0561 IPR012332 P22 tailspike C-terminal domain-like YPK_0561 IPR036709 YPK_0561 YPK_0562 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_0562 IPR007848 Methyltransferase small domain YPK_0562 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD YPK_0562 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0563 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPK_0563 IPR013785 Aldolase-type TIM barrel YPK_0563 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_0563 IPR036188 YPK_0563 YPK_0564 IPR005325 Protein of unknown function DUF308, membrane YPK_0565 IPR000719 Protein kinase domain YPK_0565 IPR008266 Tyrosine-protein kinase, active site YPK_0565 IPR011009 Protein kinase-like domain YPK_0566 IPR036457 YPK_0566 YPK_0567 IPR002035 von Willebrand factor, type A YPK_0567 IPR028274 TerY-C metal binding domain YPK_0567 IPR036465 YPK_0567 YPK_0568 IPR002035 von Willebrand factor, type A YPK_0568 IPR011392 Tellurite resistance, TerY YPK_0568 IPR036465 YPK_0568 YPK_0569 IPR003325 TerD domain YPK_0570 IPR002035 von Willebrand factor, type A YPK_0570 IPR011392 Tellurite resistance, TerY YPK_0570 IPR036465 YPK_0570 YPK_0571 IPR005565 Haemolysin activator HlyB YPK_0571 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_0571 IPR027282 Two partner secretion pathway transporter YPK_0571 IPR035251 YPK_0571 YPK_0572 IPR008619 Filamentous haemagglutinin repeat YPK_0572 IPR008638 Filamentous haemagglutinin, N-terminal YPK_0572 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPK_0572 IPR011050 Pectin lyase fold/virulence factor YPK_0572 IPR012334 Pectin lyase fold YPK_0572 IPR024973 ESPR domain YPK_0575 IPR006914 VENN motif-containing domain YPK_0575 IPR025157 Haemagluttinin repeat YPK_0576 IPR009888 Protein of unknown function DUF1436 YPK_0576 IPR037891 YPK_0576 YPK_0577 IPR006914 VENN motif-containing domain YPK_0580 IPR025331 Protein of unknown function DUF4237 YPK_0581 IPR028952 Immunity protein 38 YPK_0583 IPR005546 Autotransporter beta-domain YPK_0583 IPR036709 YPK_0583 YPK_0584 IPR025737 MetA-pathway of phenol degradation, putative YPK_0585 IPR019282 Domain of unknown function DUF2329 YPK_0586 IPR003439 ABC transporter-like YPK_0586 IPR003593 AAA+ ATPase domain YPK_0586 IPR008995 Molybdate/tungstate binding, C-terminal YPK_0586 IPR013611 Transport-associated OB, type 2 YPK_0586 IPR017871 ABC transporter, conserved site YPK_0586 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0587 IPR008928 Six-hairpin glycosidase-like YPK_0587 IPR012341 Six-hairpin glycosidase YPK_0588 IPR000843 Transcription regulator HTH, LacI YPK_0588 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0588 IPR028082 Periplasmic binding protein-like I YPK_0589 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_0590 IPR000515 MetI-like domain YPK_0590 IPR035906 YPK_0590 YPK_0591 IPR000515 MetI-like domain YPK_0591 IPR035906 YPK_0591 YPK_0593 IPR001764 Glycoside hydrolase, family 3, N-terminal YPK_0593 IPR002772 Glycoside hydrolase family 3 C-terminal domain YPK_0593 IPR013783 Immunoglobulin-like fold YPK_0593 IPR017853 Glycoside hydrolase, superfamily YPK_0593 IPR026891 Fibronectin type III-like domain YPK_0593 IPR036881 YPK_0593 YPK_0593 IPR036962 YPK_0593 YPK_0594 IPR003423 Outer membrane efflux protein YPK_0594 IPR028351 Cyclolysin transport protein CyaE YPK_0595 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein YPK_0596 IPR039562 YPK_0596 YPK_0597 IPR031381 YPK_0597 YPK_0599 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPK_0599 IPR004839 Aminotransferase, class I/classII YPK_0599 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_0599 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_0599 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0600 IPR018461 Na+/H+ antiporter, NhaC-like YPK_0601 IPR019587 Polyketide cyclase/dehydrase YPK_0601 IPR023393 START-like domain YPK_0602 IPR013559 YheO-like YPK_0602 IPR039445 YPK_0602 YPK_0603 IPR006056 Enamine/imine deaminase YjgF-like YPK_0603 IPR006175 YjgF/Yer057p/UK114 family YPK_0603 IPR019897 YjgF-like protein, conserved site YPK_0603 IPR035959 YPK_0603 YPK_0604 IPR006175 YjgF/Yer057p/UK114 family YPK_0604 IPR035959 YPK_0604 YPK_0605 IPR011008 Dimeric alpha-beta barrel YPK_0605 IPR014910 Mono-oxygenase, YdhR YPK_0606 IPR036249 YPK_0606 YPK_0607 IPR000847 Transcription regulator HTH, LysR YPK_0607 IPR005119 LysR, substrate-binding YPK_0607 IPR036388 YPK_0607 YPK_0607 IPR036390 YPK_0607 YPK_0608 IPR003812 Fido domain YPK_0608 IPR036597 YPK_0608 YPK_0613 IPR005335 Terminase small subunit YPK_0613 IPR038713 YPK_0613 YPK_0614 IPR002104 Integrase, catalytic YPK_0614 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_0614 IPR013762 Integrase-like, catalytic core YPK_0614 IPR025166 Domain of unknown function DUF4102 YPK_0614 IPR038488 YPK_0614 YPK_0616 IPR009061 DNA binding domain, putative YPK_0617 IPR013557 AntA/AntB antirepressor YPK_0622 IPR004968 DNA primase/nucleoside triphosphatase, C-terminal YPK_0622 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal YPK_0622 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0622 IPR036388 YPK_0622 YPK_0622 IPR036390 YPK_0622 YPK_0627 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_0631 IPR024997 Protein of unknown function DUF3892 YPK_0632 IPR009061 DNA binding domain, putative YPK_0632 IPR012884 Excisionase-like YPK_0632 IPR038137 YPK_0632 YPK_0634 IPR000943 RNA polymerase sigma-70 YPK_0634 IPR007127 RNA polymerase sigma factor 70, region 1.1 YPK_0634 IPR007624 RNA polymerase sigma-70 region 3 YPK_0634 IPR007627 RNA polymerase sigma-70 region 2 YPK_0634 IPR007630 RNA polymerase sigma-70 region 4 YPK_0634 IPR007631 RNA polymerase sigma factor 70, non-essential domain YPK_0634 IPR009042 RNA polymerase sigma-70 region 1.2 YPK_0634 IPR012760 RNA polymerase sigma factor RpoD, C-terminal YPK_0634 IPR013324 RNA polymerase sigma factor, region 3/4 YPK_0634 IPR013325 RNA polymerase sigma factor, region 2 YPK_0634 IPR014284 RNA polymerase sigma-70 like domain YPK_0634 IPR028630 RNA polymerase sigma factor RpoD YPK_0634 IPR036388 YPK_0634 YPK_0635 IPR002694 Zinc finger, CHC2-type YPK_0635 IPR006171 Toprim domain YPK_0635 IPR006295 DNA primase, DnaG YPK_0635 IPR013173 DNA primase DnaG, DnaB-binding domain YPK_0635 IPR013264 DNA primase, catalytic core, N-terminal YPK_0635 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPK_0635 IPR019475 DNA primase, DnaB-helicase binding domain YPK_0635 IPR030846 YPK_0635 YPK_0635 IPR036977 YPK_0635 YPK_0635 IPR037068 YPK_0635 YPK_0636 IPR001911 Ribosomal protein S21 YPK_0636 IPR018278 Ribosomal protein S21, conserved site YPK_0636 IPR038380 YPK_0636 YPK_0637 IPR000905 Gcp-like domain YPK_0637 IPR017860 Peptidase M22, conserved site YPK_0637 IPR017861 Kae1/YgjD family YPK_0637 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD YPK_0638 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY YPK_0639 IPR006156 Dihydroneopterin aldolase YPK_0639 IPR006157 Dihydroneopterin aldolase/epimerase domain YPK_0640 IPR003824 Undecaprenyl-diphosphatase UppP YPK_0641 IPR002646 Poly A polymerase, head domain YPK_0641 IPR003607 HD/PDEase domain YPK_0641 IPR006674 HD domain YPK_0641 IPR012006 tRNA nucleotidyltransferase, proteobacteria YPK_0641 IPR032828 YPK_0641 YPK_0642 IPR003646 SH3-like domain, bacterial-type YPK_0642 IPR016476 SH3 domain protein YPK_0643 IPR023577 CYTH-like domain YPK_0643 IPR033469 YPK_0643 YPK_0644 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain YPK_0644 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPK_0644 IPR023057 Glutamate-ammonia-ligase adenylyltransferase YPK_0645 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPK_0645 IPR004821 Cytidyltransferase-like domain YPK_0645 IPR011611 Carbohydrate kinase PfkB YPK_0645 IPR011913 RfaE bifunctional protein, domain I YPK_0645 IPR011914 RfaE bifunctional protein, domain II YPK_0645 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_0645 IPR023030 Bifunctional protein HldE YPK_0645 IPR029056 Ribokinase-like YPK_0646 IPR002293 Amino acid/polyamine transporter I YPK_0647 IPR007475 Membrane fusogenic activity YPK_0649 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YPK_0649 IPR017945 DHBP synthase RibB-like alpha/beta domain YPK_0650 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPK_0650 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type YPK_0651 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YPK_0651 IPR016185 Pre-ATP-grasp domain YPK_0652 IPR009576 Biofilm formation YgiB YPK_0654 IPR003423 Outer membrane efflux protein YPK_0654 IPR010130 Type I secretion outer membrane protein, TolC YPK_0655 IPR000086 NUDIX hydrolase domain YPK_0655 IPR004385 Nucleoside diphosphate pyrophosphatase YPK_0655 IPR015797 NUDIX hydrolase domain-like YPK_0655 IPR020084 NUDIX hydrolase, conserved site YPK_0656 IPR009659 Protein of unknown function DUF1249 YPK_0657 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPK_0657 IPR013622 Calcineurin-like phosphoesterase C-terminal YPK_0657 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA YPK_0657 IPR029052 Metallo-dependent phosphatase-like YPK_0658 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPK_0658 IPR029058 Alpha/Beta hydrolase fold YPK_0659 IPR001241 DNA topoisomerase, type IIA YPK_0659 IPR002288 DNA gyrase B subunit, C-terminal YPK_0659 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_0659 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative YPK_0659 IPR006171 Toprim domain YPK_0659 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YPK_0659 IPR013759 DNA topoisomerase, type IIA, central domain YPK_0659 IPR013760 DNA topoisomerase, type IIA-like domain YPK_0659 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0659 IPR018522 DNA topoisomerase, type IIA, conserved site YPK_0659 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0659 IPR036890 YPK_0659 YPK_0660 IPR000847 Transcription regulator HTH, LysR YPK_0660 IPR005119 LysR, substrate-binding YPK_0660 IPR036388 YPK_0660 YPK_0660 IPR036390 YPK_0660 YPK_0661 IPR003680 Flavodoxin-like fold YPK_0661 IPR029039 Flavoprotein-like YPK_0662 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPK_0662 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative YPK_0662 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YPK_0662 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain YPK_0662 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPK_0662 IPR013760 DNA topoisomerase, type IIA-like domain YPK_0662 IPR035516 YPK_0662 YPK_0663 IPR002123 Phospholipid/glycerol acyltransferase YPK_0663 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase YPK_0665 IPR008972 Cupredoxin YPK_0665 IPR011706 Multicopper oxidase, type 2 YPK_0665 IPR011707 Multicopper oxidase, type 3 YPK_0665 IPR026589 Cell division protein FtsP YPK_0666 IPR006638 Elongator protein 3/MiaB/NifB YPK_0666 IPR007197 Radical SAM YPK_0666 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPK_0666 IPR020612 Methylthiotransferase, conserved site YPK_0666 IPR022946 Uncharacterised protein family UPF0313 YPK_0666 IPR023404 Radical SAM, alpha/beta horseshoe YPK_0666 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPK_0667 IPR018170 Aldo/keto reductase, conserved site YPK_0667 IPR020471 Aldo/keto reductase subgroup YPK_0667 IPR023210 NADP-dependent oxidoreductase domain YPK_0667 IPR036812 YPK_0667 YPK_0668 IPR001670 Alcohol dehydrogenase, iron-type YPK_0668 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPK_0669 IPR009057 Homeodomain-like YPK_0669 IPR009594 Transcription regulator HTH, AraC, N-terminal YPK_0669 IPR018060 DNA binding HTH domain, AraC-type YPK_0670 IPR032816 YPK_0670 YPK_0671 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPK_0671 IPR006233 Cystathionine beta-lyase, bacterial YPK_0671 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_0671 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_0671 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0672 IPR002898 MotA/TolQ/ExbB proton channel YPK_0672 IPR014164 TonB-system energizer ExbB type-1 YPK_0673 IPR003400 Biopolymer transport protein ExbD/TolR YPK_0673 IPR014170 TonB system transport protein ExbD type-1 YPK_0677 IPR031582 YPK_0677 YPK_0678 IPR012495 TadE-like YPK_0679 IPR011990 Tetratricopeptide-like helical domain YPK_0680 IPR018076 Type II secretion system F domain YPK_0681 IPR018076 Type II secretion system F domain YPK_0682 IPR001482 Type II secretion system protein E YPK_0682 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0683 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0685 IPR001775 GspD/PilQ family YPK_0685 IPR004846 Type II/III secretion system YPK_0685 IPR032789 YPK_0685 YPK_0687 IPR000045 Prepilin type IV endopeptidase, peptidase domain YPK_0689 IPR016032 Signal transduction response regulator, C-terminal effector YPK_0689 IPR036388 YPK_0689 YPK_0692 IPR003961 Fibronectin, type III YPK_0692 IPR004302 Chitin-binding, domain 3 YPK_0692 IPR013783 Immunoglobulin-like fold YPK_0692 IPR014756 Immunoglobulin E-set YPK_0692 IPR036116 YPK_0692 YPK_0692 IPR036573 YPK_0692 YPK_0693 IPR001223 Glycoside hydrolase, family 18, catalytic domain YPK_0693 IPR001579 Glycoside hydrolase, chitinase active site YPK_0693 IPR003961 Fibronectin, type III YPK_0693 IPR011583 Chitinase II YPK_0693 IPR013783 Immunoglobulin-like fold YPK_0693 IPR017853 Glycoside hydrolase, superfamily YPK_0693 IPR036116 YPK_0693 YPK_0693 IPR036573 YPK_0693 YPK_0694 IPR000259 Fimbrial-type adhesion domain YPK_0694 IPR008966 Adhesion domain YPK_0694 IPR036937 YPK_0694 YPK_0695 IPR000015 Outer membrane usher protein YPK_0695 IPR025885 PapC, N-terminal domain YPK_0695 IPR025949 PapC-like, C-terminal domain YPK_0695 IPR037224 YPK_0695 YPK_0696 IPR001829 Pili assembly chaperone, bacterial YPK_0696 IPR008962 PapD-like YPK_0696 IPR013783 Immunoglobulin-like fold YPK_0696 IPR016147 PapD, N-terminal, bacterial YPK_0696 IPR016148 Pili assembly chaperone, C-terminal domain YPK_0696 IPR018046 Pili assembly chaperone, conserved site YPK_0696 IPR036316 YPK_0696 YPK_0697 IPR000259 Fimbrial-type adhesion domain YPK_0697 IPR008966 Adhesion domain YPK_0697 IPR036937 YPK_0697 YPK_0698 IPR002491 ABC transporter periplasmic binding domain YPK_0700 IPR021326 Protein of unknown function DUF2931 YPK_0702 IPR001712 Type III secretion system FHIPEP YPK_0702 IPR025505 FHIPEP conserved site YPK_0703 IPR006135 Type III secretion system substrate exporter YPK_0703 IPR006136 Type III exporter system, flagellar biosynthetic protein FlhB YPK_0703 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_0704 IPR002010 Type III secretion system inner membrane R protein YPK_0704 IPR006303 Flagellar biosynthesis protein FliR YPK_0705 IPR002191 Bacterial export protein family 3 YPK_0705 IPR006305 Flagellar biosynthesis protein FliQ YPK_0706 IPR005837 Flagellar transport protein FliP YPK_0706 IPR005838 Type III secretion system inner membrane P protein YPK_0707 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPK_0707 IPR001543 Surface presentation of antigen (SpoA) YPK_0707 IPR012826 Flagellar motor switch FliN YPK_0707 IPR036429 YPK_0707 YPK_0708 IPR001543 Surface presentation of antigen (SpoA) YPK_0708 IPR036429 YPK_0708 YPK_0709 IPR002078 RNA polymerase sigma factor 54 interaction domain YPK_0709 IPR002197 DNA binding HTH domain, Fis-type YPK_0709 IPR003593 AAA+ ATPase domain YPK_0709 IPR009057 Homeodomain-like YPK_0709 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_0709 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_0709 IPR025944 Sigma-54 interaction domain, conserved site YPK_0709 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0710 IPR001624 Flagellar hook-basal body complex protein FliE YPK_0711 IPR000067 Flagellar M-ring protein FliF YPK_0711 IPR006182 Secretory protein YscJ/FliF YPK_0711 IPR013556 Flagellar M-ring C-terminal YPK_0712 IPR000090 Flagellar motor switch protein FliG YPK_0712 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPK_0712 IPR023087 YPK_0712 YPK_0712 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPK_0712 IPR032779 YPK_0712 YPK_0713 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPK_0713 IPR019191 Essential protein Yae1, N-terminal YPK_0714 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPK_0714 IPR003593 AAA+ ATPase domain YPK_0714 IPR005714 ATPase, type III secretion system, FliI/YscN YPK_0714 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPK_0714 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0715 IPR012823 Flagellar export FliJ YPK_0716 IPR007809 FlgN-like domain YPK_0716 IPR036679 YPK_0716 YPK_0717 IPR007412 Anti-sigma-28 factor, FlgM YPK_0717 IPR031316 YPK_0717 YPK_0717 IPR035890 YPK_0717 YPK_0718 IPR013974 SAF domain YPK_0718 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPK_0719 IPR001444 Flagellar basal body rod protein, N-terminal YPK_0719 IPR006300 Flagellar basal-body rod protein FlgB YPK_0719 IPR019776 Flagellar basal body rod protein, conserved site YPK_0720 IPR001444 Flagellar basal body rod protein, N-terminal YPK_0720 IPR006299 Flagellar basal-body rod protein FlgC YPK_0720 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_0720 IPR019776 Flagellar basal body rod protein, conserved site YPK_0721 IPR005648 Flagellar hook capping protein YPK_0721 IPR025963 FlgD Tudor-like domain YPK_0721 IPR025965 FlgD Ig-like domain YPK_0722 IPR001444 Flagellar basal body rod protein, N-terminal YPK_0722 IPR019776 Flagellar basal body rod protein, conserved site YPK_0722 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPK_0722 IPR037925 YPK_0722 YPK_0725 IPR001867 Signal transduction response regulator, C-terminal YPK_0725 IPR016032 Signal transduction response regulator, C-terminal effector YPK_0725 IPR036388 YPK_0725 YPK_0726 IPR001029 Flagellin, D0/D1 domain YPK_0726 IPR001492 Flagellin YPK_0728 IPR001029 Flagellin, D0/D1 domain YPK_0728 IPR001492 Flagellin YPK_0729 IPR011004 Trimeric LpxA-like YPK_0729 IPR018357 Hexapeptide transferase, conserved site YPK_0730 IPR000540 Flagellar motor protein MotA, conserved site YPK_0730 IPR002898 MotA/TolQ/ExbB proton channel YPK_0731 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_0731 IPR025713 Motility protein B, N-terminal domain YPK_0731 IPR036737 YPK_0731 YPK_0734 IPR008523 Lactobacillus phage LBR48, DUF805 YPK_0736 IPR008816 Glycine zipper 2TM domain YPK_0737 IPR000014 PAS domain YPK_0737 IPR000160 GGDEF domain YPK_0737 IPR001633 EAL domain YPK_0737 IPR007892 CHASE4 YPK_0737 IPR013767 PAS fold YPK_0737 IPR029787 Nucleotide cyclase YPK_0737 IPR035919 YPK_0737 YPK_0737 IPR035965 YPK_0737 YPK_0738 IPR006143 RND efflux pump, membrane fusion protein YPK_0738 IPR032317 YPK_0738 YPK_0739 IPR001036 Acriflavin resistance protein YPK_0739 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPK_0739 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_0740 IPR001036 Acriflavin resistance protein YPK_0741 IPR012927 ShET2 enterotoxin, N-terminal YPK_0743 IPR005546 Autotransporter beta-domain YPK_0743 IPR006315 Outer membrane autotransporter barrel YPK_0743 IPR011050 Pectin lyase fold/virulence factor YPK_0743 IPR012332 P22 tailspike C-terminal domain-like YPK_0743 IPR024973 ESPR domain YPK_0743 IPR036709 YPK_0743 YPK_0744 IPR029487 Novel E3 ligase domain YPK_0744 IPR032674 YPK_0744 YPK_0744 IPR032675 YPK_0744 YPK_0745 IPR032674 YPK_0745 YPK_0745 IPR032675 YPK_0745 YPK_0746 IPR029487 Novel E3 ligase domain YPK_0746 IPR032674 YPK_0746 YPK_0746 IPR032675 YPK_0746 YPK_0748 IPR004697 AbgT YPK_0749 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPK_0749 IPR002933 Peptidase M20 YPK_0749 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPK_0749 IPR011650 Peptidase M20, dimerisation domain YPK_0749 IPR036264 YPK_0749 YPK_0750 IPR000531 TonB-dependent receptor, beta-barrel YPK_0750 IPR012910 TonB-dependent receptor, plug YPK_0750 IPR036942 YPK_0750 YPK_0751 IPR000873 AMP-dependent synthetase/ligase YPK_0751 IPR001242 Condensation domain YPK_0751 IPR006162 Phosphopantetheine attachment site YPK_0751 IPR009081 Acyl carrier protein-like YPK_0751 IPR010071 Amino acid adenylation domain YPK_0751 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_0751 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_0751 IPR016039 Thiolase-like YPK_0751 IPR018201 Beta-ketoacyl synthase, active site YPK_0751 IPR020806 Polyketide synthase, phosphopantetheine-binding domain YPK_0751 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_0751 IPR020845 AMP-binding, conserved site YPK_0751 IPR023213 Chloramphenicol acetyltransferase-like domain YPK_0751 IPR036736 YPK_0751 YPK_0752 IPR000873 AMP-dependent synthetase/ligase YPK_0752 IPR001031 Thioesterase YPK_0752 IPR001242 Condensation domain YPK_0752 IPR006162 Phosphopantetheine attachment site YPK_0752 IPR009081 Acyl carrier protein-like YPK_0752 IPR010071 Amino acid adenylation domain YPK_0752 IPR013217 Methyltransferase type 12 YPK_0752 IPR020845 AMP-binding, conserved site YPK_0752 IPR023213 Chloramphenicol acetyltransferase-like domain YPK_0752 IPR029058 Alpha/Beta hydrolase fold YPK_0752 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0752 IPR036736 YPK_0752 YPK_0753 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_0753 IPR036291 YPK_0753 YPK_0754 IPR000683 Oxidoreductase, N-terminal YPK_0754 IPR010091 Thiazolinyl imide reductase YPK_0754 IPR036291 YPK_0754 YPK_0755 IPR001031 Thioesterase YPK_0755 IPR029058 Alpha/Beta hydrolase fold YPK_0756 IPR011701 Major facilitator superfamily YPK_0756 IPR036259 YPK_0756 YPK_0757 IPR003439 ABC transporter-like YPK_0757 IPR003593 AAA+ ATPase domain YPK_0757 IPR011527 ABC transporter type 1, transmembrane domain YPK_0757 IPR017871 ABC transporter, conserved site YPK_0757 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0757 IPR036640 YPK_0757 YPK_0758 IPR003439 ABC transporter-like YPK_0758 IPR003593 AAA+ ATPase domain YPK_0758 IPR011527 ABC transporter type 1, transmembrane domain YPK_0758 IPR017871 ABC transporter, conserved site YPK_0758 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0758 IPR036640 YPK_0758 YPK_0762 IPR003474 Gluconate transporter YPK_0763 IPR005546 Autotransporter beta-domain YPK_0763 IPR006315 Outer membrane autotransporter barrel YPK_0763 IPR011050 Pectin lyase fold/virulence factor YPK_0763 IPR012332 P22 tailspike C-terminal domain-like YPK_0763 IPR036709 YPK_0763 YPK_0764 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_0764 IPR010609 Gp5, C-terminal YPK_0764 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_0764 IPR037026 YPK_0764 YPK_0765 IPR011990 Tetratricopeptide-like helical domain YPK_0766 IPR001826 RHS protein YPK_0766 IPR006530 YD repeat YPK_0766 IPR022385 Rhs repeat-associated core YPK_0766 IPR031325 YPK_0766 YPK_0767 IPR011989 Armadillo-like helical YPK_0767 IPR016024 Armadillo-type fold YPK_0768 IPR001826 RHS protein YPK_0768 IPR022385 Rhs repeat-associated core YPK_0768 IPR032871 YPK_0768 YPK_0769 IPR025409 Protein of unknown function DUF4303 YPK_0770 IPR001826 RHS protein YPK_0770 IPR006530 YD repeat YPK_0770 IPR022385 Rhs repeat-associated core YPK_0770 IPR031325 YPK_0770 YPK_0772 IPR001826 RHS protein YPK_0772 IPR022385 Rhs repeat-associated core YPK_0776 IPR029078 Immunity protein 25 YPK_0778 IPR001898 Sodium/sulphate symporter YPK_0778 IPR031312 YPK_0778 YPK_0779 IPR000843 Transcription regulator HTH, LacI YPK_0779 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0779 IPR028082 Periplasmic binding protein-like I YPK_0780 IPR001547 Glycoside hydrolase, family 5 YPK_0780 IPR017853 Glycoside hydrolase, superfamily YPK_0781 IPR001927 Sodium:galactoside symporter YPK_0781 IPR036259 YPK_0781 YPK_0782 IPR000531 TonB-dependent receptor, beta-barrel YPK_0782 IPR010105 TonB-dependent siderophore receptor YPK_0782 IPR010917 TonB-dependent receptor, conserved site YPK_0782 IPR012910 TonB-dependent receptor, plug YPK_0782 IPR036942 YPK_0782 YPK_0782 IPR037066 YPK_0782 YPK_0783 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPK_0783 IPR036188 YPK_0783 YPK_0784 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPK_0784 IPR022770 Ferric iron reductase FhuF domain YPK_0785 IPR016181 Acyl-CoA N-acyltransferase YPK_0785 IPR019432 Siderophore biosynthesis protein, conserved domain YPK_0786 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPK_0786 IPR022770 Ferric iron reductase FhuF domain YPK_0788 IPR011701 Major facilitator superfamily YPK_0788 IPR036259 YPK_0788 YPK_0789 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal YPK_0789 IPR015889 Intradiol ring-cleavage dioxygenase, core YPK_0790 IPR010126 Esterase, PHB depolymerase YPK_0790 IPR029058 Alpha/Beta hydrolase fold YPK_0791 IPR000792 Transcription regulator LuxR, C-terminal YPK_0791 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPK_0791 IPR016032 Signal transduction response regulator, C-terminal effector YPK_0791 IPR036388 YPK_0791 YPK_0791 IPR036693 YPK_0791 YPK_0792 IPR001690 Autoinducer synthesis protein YPK_0792 IPR016181 Acyl-CoA N-acyltransferase YPK_0792 IPR018311 Autoinducer synthesis, conserved site YPK_0793 IPR003675 CAAX amino terminal protease YPK_0795 IPR003220 InsA N-terminal domain YPK_0795 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPK_0798 IPR008312 Uncharacterised conserved protein UCP028301 YPK_0799 IPR010269 Protein of unknown function DUF877 YPK_0800 IPR010263 Protein of unknown function DUF876 YPK_0801 IPR017732 Type IV / VI secretion system, DotU YPK_0801 IPR038522 YPK_0801 YPK_0802 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_0802 IPR036737 YPK_0802 YPK_0803 IPR008514 Type VI secretion system effector, Hcp YPK_0803 IPR036624 YPK_0803 YPK_0804 IPR001270 ClpA/B family YPK_0804 IPR003593 AAA+ ATPase domain YPK_0804 IPR003959 ATPase, AAA-type, core YPK_0804 IPR017729 Type VI secretion system, ATPase ClpV1 YPK_0804 IPR018368 ClpA/B, conserved site 1 YPK_0804 IPR019489 Clp ATPase, C-terminal YPK_0804 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0804 IPR036628 YPK_0804 YPK_0805 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_0805 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_0805 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPK_0805 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain YPK_0805 IPR037026 YPK_0805 YPK_0806 IPR011055 Duplicated hybrid motif YPK_0806 IPR016047 Peptidase M23 YPK_0806 IPR023346 Lysozyme-like domain YPK_0808 IPR003220 InsA N-terminal domain YPK_0808 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPK_0809 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPK_0810 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_0810 IPR013762 Integrase-like, catalytic core YPK_0811 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPK_0811 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPK_0811 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPK_0811 IPR011006 CheY-like superfamily YPK_0811 IPR011193 Ornithine/lysine/arginine decarboxylase YPK_0811 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_0811 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_0811 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0811 IPR027464 Ornithine decarboxylase, N-terminal domain YPK_0811 IPR027568 Ornithine decarboxylase SpeF YPK_0811 IPR036633 YPK_0811 YPK_0812 IPR025997 Periplasmic binding protein domain YPK_0812 IPR028082 Periplasmic binding protein-like I YPK_0813 IPR003439 ABC transporter-like YPK_0813 IPR003593 AAA+ ATPase domain YPK_0813 IPR017871 ABC transporter, conserved site YPK_0813 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0814 IPR001851 ABC transporter, permease YPK_0815 IPR000531 TonB-dependent receptor, beta-barrel YPK_0815 IPR010105 TonB-dependent siderophore receptor YPK_0815 IPR012910 TonB-dependent receptor, plug YPK_0815 IPR036942 YPK_0815 YPK_0815 IPR037066 YPK_0815 YPK_0816 IPR002491 ABC transporter periplasmic binding domain YPK_0818 IPR000189 Prokaryotic transglycosylase, active site YPK_0818 IPR008258 Lytic transglycosylase-like SLT domain YPK_0818 IPR023346 Lysozyme-like domain YPK_0818 IPR023664 Murein transglycosylase-C YPK_0818 IPR024570 Murein transglycosylase-C, N-terminal YPK_0819 IPR007457 Fe(II) trafficking protein YggX YPK_0819 IPR036766 YPK_0819 YPK_0820 IPR000445 Helix-hairpin-helix motif YPK_0820 IPR003265 HhH-GPD domain YPK_0820 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPK_0820 IPR004035 Endonuclease III, iron-sulphur binding site YPK_0820 IPR004036 Endonuclease III-like, conserved site-2 YPK_0820 IPR005760 A/G-specific adenine glycosylase MutY YPK_0820 IPR011257 DNA glycosylase YPK_0820 IPR015797 NUDIX hydrolase domain-like YPK_0820 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPK_0820 IPR029119 MutY, C-terminal YPK_0821 IPR003358 tRNA (guanine-N-7) methyltransferase YPK_0821 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0822 IPR007416 Protein of unknown function DUF469 YPK_0823 IPR012338 Beta-lactamase/transpeptidase-like YPK_0823 IPR015868 Glutaminase YPK_0824 IPR021307 Protein of unknown function DUF2884 YPK_0825 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0825 IPR020974 Peptidase C80, RTX cysteine protease domain YPK_0825 IPR038383 YPK_0825 YPK_0826 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related YPK_0826 IPR006638 Elongator protein 3/MiaB/NifB YPK_0826 IPR007197 Radical SAM YPK_0826 IPR010723 HemN, C-terminal domain YPK_0826 IPR023404 Radical SAM, alpha/beta horseshoe YPK_0827 IPR002637 Ham1-like protein YPK_0827 IPR020922 Non-canonical purine NTP pyrophosphatase YPK_0827 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_0828 IPR003746 Protein of unknown function DUF167 YPK_0828 IPR005228 Conserved hypothetical protein CHP00251 YPK_0828 IPR036591 YPK_0828 YPK_0829 IPR003425 Uncharacterised protein family Ycf19 YPK_0831 IPR000304 Pyrroline-5-carboxylate reductase YPK_0831 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_0831 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YPK_0831 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain YPK_0831 IPR036291 YPK_0831 YPK_0832 IPR001608 Alanine racemase, N-terminal YPK_0832 IPR011078 Uncharacterised protein family UPF0001 YPK_0832 IPR029066 PLP-binding barrel YPK_0833 IPR001482 Type II secretion system protein E YPK_0833 IPR003593 AAA+ ATPase domain YPK_0833 IPR006321 Pilus retraction protein PilT YPK_0833 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0834 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type YPK_0834 IPR017754 Agmatine deiminase YPK_0835 IPR003010 Carbon-nitrogen hydrolase YPK_0835 IPR017755 N-carbamoylputrescine amidase YPK_0835 IPR036526 YPK_0835 YPK_0836 IPR005227 Resolvase, holliday junction-type, YqgF-like YPK_0836 IPR006641 YqgF/RNase H-like domain YPK_0836 IPR012337 Ribonuclease H-like domain YPK_0836 IPR037027 YPK_0836 YPK_0837 IPR003774 Protein of unknown function UPF0301 YPK_0838 IPR004215 Prokaryotic glutathione synthetase, N-terminal YPK_0838 IPR004218 Prokaryotic glutathione synthetase, ATP-binding YPK_0838 IPR006284 Glutathione synthetase, prokaryotic YPK_0838 IPR013815 ATP-grasp fold, subdomain 1 YPK_0838 IPR016185 Pre-ATP-grasp domain YPK_0839 IPR006700 Ribosomal RNA small subunit methyltransferase E YPK_0839 IPR015947 PUA-like domain YPK_0839 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_0839 IPR029028 Alpha/beta knot methyltransferases YPK_0841 IPR007346 Endonuclease I YPK_0842 IPR006640 Domain of unknown function SprT-like YPK_0842 IPR023483 Uncharacterised protein family SprT YPK_0842 IPR035240 YPK_0842 YPK_0843 IPR002133 S-adenosylmethionine synthetase YPK_0843 IPR022628 S-adenosylmethionine synthetase, N-terminal YPK_0843 IPR022629 S-adenosylmethionine synthetase, central domain YPK_0843 IPR022630 S-adenosylmethionine synthetase, C-terminal YPK_0843 IPR022631 S-adenosylmethionine synthetase, conserved site YPK_0843 IPR022636 S-adenosylmethionine synthetase superfamily YPK_0845 IPR000183 Ornithine/DAP/Arg decarboxylase YPK_0845 IPR002985 Arginine decarboxylase YPK_0845 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPK_0845 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPK_0845 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPK_0845 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPK_0845 IPR029066 PLP-binding barrel YPK_0846 IPR002686 Transposase IS200-like YPK_0846 IPR036515 YPK_0846 YPK_0848 IPR002686 Transposase IS200-like YPK_0848 IPR036515 YPK_0848 YPK_0849 IPR001915 Peptidase M48 YPK_0850 IPR005474 Transketolase, N-terminal YPK_0850 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_0850 IPR005478 Transketolase, bacterial-like YPK_0850 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPK_0850 IPR020826 Transketolase binding site YPK_0850 IPR029061 Thiamin diphosphate-binding fold YPK_0850 IPR033248 YPK_0850 YPK_0851 IPR006422 D-erythrose-4-phosphate dehydrogenase YPK_0851 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPK_0851 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPK_0851 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPK_0851 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPK_0851 IPR036291 YPK_0851 YPK_0852 IPR001576 Phosphoglycerate kinase YPK_0852 IPR015824 Phosphoglycerate kinase, N-terminal YPK_0852 IPR015911 Phosphoglycerate kinase, conserved site YPK_0852 IPR036043 YPK_0852 YPK_0853 IPR000771 Ketose-bisphosphate aldolase, class-II YPK_0853 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YPK_0853 IPR013785 Aldolase-type TIM barrel YPK_0854 IPR006685 Mechanosensitive ion channel MscS YPK_0854 IPR006686 Mechanosensitive ion channel MscS, conserved site YPK_0854 IPR008910 Conserved TM helix YPK_0854 IPR010920 Like-Sm (LSM) domain YPK_0854 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPK_0854 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPK_0854 IPR023408 YPK_0854 YPK_0855 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPK_0855 IPR004777 L-lysine exporter/arginine exporter YPK_0855 IPR023445 Arginine exporter protein ArgO, enterobacteria YPK_0856 IPR007497 Protein of unknown function DUF541 YPK_0857 IPR000847 Transcription regulator HTH, LysR YPK_0857 IPR005119 LysR, substrate-binding YPK_0857 IPR017685 Transcription regulator ArgP YPK_0857 IPR023490 Chromosome initiation inhibitor YPK_0857 IPR036388 YPK_0857 YPK_0857 IPR036390 YPK_0857 YPK_0858 IPR004788 Ribose 5-phosphate isomerase, type A YPK_0858 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPK_0858 IPR037171 YPK_0858 YPK_0859 IPR002912 ACT domain YPK_0859 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_0859 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPK_0859 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPK_0859 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_0859 IPR036291 YPK_0859 YPK_0860 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPK_0860 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain YPK_0860 IPR037171 YPK_0860 YPK_0861 IPR007838 Cell division protein ZapA-like YPK_0861 IPR023771 Cell division protein ZapA, eubacteria YPK_0861 IPR036192 YPK_0861 YPK_0862 IPR011978 Uncharacterised protein family UPF0149 YPK_0862 IPR036255 YPK_0862 YPK_0863 IPR000994 Peptidase M24, structural domain YPK_0863 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPK_0863 IPR001714 Peptidase M24, methionine aminopeptidase YPK_0863 IPR007865 Aminopeptidase P, N-terminal YPK_0863 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_0863 IPR036005 YPK_0863 YPK_0864 IPR002938 Monooxygenase, FAD-binding YPK_0864 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 YPK_0864 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase YPK_0864 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPK_0864 IPR036188 YPK_0864 YPK_0865 IPR002938 Monooxygenase, FAD-binding YPK_0865 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 YPK_0865 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YPK_0865 IPR036188 YPK_0865 YPK_0867 IPR006222 Glycine cleavage T-protein, N-terminal YPK_0867 IPR006223 Glycine cleavage system T protein YPK_0867 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain YPK_0867 IPR022903 Glycine cleavage system T protein, bacteria YPK_0867 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPK_0867 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA YPK_0867 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain YPK_0868 IPR002930 Glycine cleavage system H-protein YPK_0868 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPK_0868 IPR011053 Single hybrid motif YPK_0868 IPR017453 Glycine cleavage system H-protein, subgroup YPK_0868 IPR033753 YPK_0868 YPK_0869 IPR003437 Glycine cleavage system P protein, homodimeric YPK_0869 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_0869 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_0869 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0869 IPR020581 Glycine cleavage system P protein YPK_0870 IPR024311 Lipocalin-like domain YPK_0871 IPR005594 YadA-like, C-terminal YPK_0871 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPK_0871 IPR008640 Head domain of trimeric autotransporter adhesin YPK_0871 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0873 IPR004254 Hly-III-related YPK_0873 IPR005744 HylII YPK_0874 IPR018681 Protein of unknown function DUF2165, transmembrane YPK_0875 IPR006222 Glycine cleavage T-protein, N-terminal YPK_0875 IPR017703 YgfZ/GcvT conserved site YPK_0875 IPR023758 tRNA-modifying protein YgfZ YPK_0875 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA YPK_0875 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain YPK_0876 IPR005631 Flavinator of succinate dehydrogenase YPK_0876 IPR036714 YPK_0876 YPK_0878 IPR001789 Signal transduction response regulator, receiver domain YPK_0878 IPR001867 Signal transduction response regulator, C-terminal YPK_0878 IPR011006 CheY-like superfamily YPK_0878 IPR016032 Signal transduction response regulator, C-terminal effector YPK_0878 IPR036388 YPK_0878 YPK_0879 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_0879 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_0879 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_0879 IPR029150 Sensory domain of two-component sensor kinase YPK_0879 IPR029151 Periplasmic sensor domain-like YPK_0879 IPR036097 YPK_0879 YPK_0879 IPR036890 YPK_0879 YPK_0880 IPR010364 Uncharacterised protein family, inner membrane CreD YPK_0881 IPR001226 Flavodoxin, conserved site YPK_0881 IPR008254 Flavodoxin/nitric oxide synthase YPK_0881 IPR010086 Flavodoxin, long chain YPK_0881 IPR029039 Flavoprotein-like YPK_0882 IPR002104 Integrase, catalytic YPK_0882 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_0882 IPR013762 Integrase-like, catalytic core YPK_0883 IPR010744 Bacteriophage CI repressor YPK_0883 IPR032499 YPK_0883 YPK_0885 IPR009679 Bacteriophage 186, CII YPK_0888 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_0888 IPR012263 Adenine modification methylase, M.EcoRV-type YPK_0888 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPK_0888 IPR023095 Adenine-specific methyltransferase, domain 2 YPK_0888 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_0889 IPR020126 Protein of unknown function DUF2732 YPK_0890 IPR020284 Protein of unknown function CP83 YPK_0890 IPR035404 YPK_0890 YPK_0891 IPR002500 Phosphoadenosine phosphosulphate reductase YPK_0892 IPR008766 Replication gene A protein YPK_0895 IPR007684 Zinc finger, Ogr/Delta-type YPK_0896 IPR006430 Phage portal protein, PBSX family YPK_0896 IPR006944 Bacteriophage/Gene transfer agent portal protein YPK_0896 IPR030935 YPK_0896 YPK_0897 IPR004921 Terminase, large subunit YPK_0897 IPR010332 ATPase terminase subunit, putative YPK_0897 IPR035421 YPK_0897 YPK_0898 IPR009228 Capsid scaffolding protein GpO YPK_0899 IPR006441 Bacteriophage P2, GpN, major capsid YPK_0900 IPR010270 Bacteriophage P2, GpM YPK_0901 IPR009225 Bacteriophage head completion protein GpL YPK_0902 IPR009678 Bacteriophage tail completion protein R YPK_0904 IPR019694 Bacteriophage HP1, Orf23 YPK_0905 IPR019708 Bacteriophage HP1, Orf24 YPK_0906 IPR007633 Bacteriophage P2, GpY, holin YPK_0907 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPK_0907 IPR039561 YPK_0907 YPK_0909 IPR024406 Protein of unknown function DUF2765 YPK_0910 IPR010090 Phage tail tape measure protein YPK_0911 IPR019697 Bacteriophage HP1, Orf28 YPK_0912 IPR006949 Baseplate assembly protein J-like, predicted YPK_0914 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 YPK_0914 IPR022225 Phage tail fibre protein YPK_0915 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_0918 IPR037026 YPK_0918 YPK_0920 IPR002104 Integrase, catalytic YPK_0920 IPR004107 Integrase, SAM-like, N-terminal YPK_0920 IPR010998 Integrase, Lambda-type, N-terminal YPK_0920 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_0920 IPR011932 Tyrosine recombinase XerD YPK_0920 IPR013762 Integrase-like, catalytic core YPK_0920 IPR023009 Tyrosine recombinase XerC/XerD YPK_0921 IPR009094 Disulphide bond isomerase, DsbC, N-terminal YPK_0921 IPR012336 Thioredoxin-like fold YPK_0921 IPR017937 Thioredoxin, conserved site YPK_0921 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YPK_0921 IPR036249 YPK_0921 YPK_0922 IPR001667 DDH domain YPK_0922 IPR003156 DHHA1 domain YPK_0922 IPR004610 Bacterial RecJ exonuclease YPK_0922 IPR038763 YPK_0922 YPK_0923 IPR000352 Peptide chain release factor class I/class II YPK_0923 IPR004374 Peptide chain release factor 2 YPK_0923 IPR005139 Peptide chain release factor YPK_0924 IPR002313 Lysine-tRNA ligase, class II YPK_0924 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPK_0924 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPK_0924 IPR012340 Nucleic acid-binding, OB-fold YPK_0924 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPK_0924 IPR034762 YPK_0924 YPK_0925 IPR002104 Integrase, catalytic YPK_0925 IPR010998 Integrase, Lambda-type, N-terminal YPK_0925 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_0925 IPR013762 Integrase-like, catalytic core YPK_0925 IPR025166 Domain of unknown function DUF4102 YPK_0925 IPR038488 YPK_0925 YPK_0926 IPR037026 YPK_0926 YPK_0929 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_0930 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 YPK_0930 IPR022225 Phage tail fibre protein YPK_0932 IPR006949 Baseplate assembly protein J-like, predicted YPK_0933 IPR019697 Bacteriophage HP1, Orf28 YPK_0935 IPR019708 Bacteriophage HP1, Orf24 YPK_0936 IPR019694 Bacteriophage HP1, Orf23 YPK_0938 IPR009678 Bacteriophage tail completion protein R YPK_0939 IPR009225 Bacteriophage head completion protein GpL YPK_0940 IPR010270 Bacteriophage P2, GpM YPK_0941 IPR006441 Bacteriophage P2, GpN, major capsid YPK_0942 IPR009228 Capsid scaffolding protein GpO YPK_0943 IPR004921 Terminase, large subunit YPK_0943 IPR010332 ATPase terminase subunit, putative YPK_0943 IPR035421 YPK_0943 YPK_0945 IPR006171 Toprim domain YPK_0945 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal YPK_0946 IPR009241 Addiction module killer protein YPK_0948 IPR009061 DNA binding domain, putative YPK_0948 IPR010260 Bacteriophage P4, Orf88 YPK_0951 IPR003812 Fido domain YPK_0951 IPR036597 YPK_0951 YPK_0952 IPR008727 PAAR motif YPK_0952 IPR016128 Pyosin/cloacin translocation domain YPK_0952 IPR036302 YPK_0952 YPK_0953 IPR025983 Cysteine-rich CPCC domain YPK_0955 IPR015287 Colicin D immunity protein domain YPK_0955 IPR036471 YPK_0955 YPK_0957 IPR021488 Protein of unknown function DUF3142 YPK_0959 IPR008727 PAAR motif YPK_0960 IPR024476 Protein of unknown function DUF3861 YPK_0961 IPR005149 Transcription regulator PadR N-terminal YPK_0961 IPR036388 YPK_0961 YPK_0961 IPR036390 YPK_0961 YPK_0962 IPR024453 YPK_0962 YPK_0962 IPR038765 YPK_0962 YPK_0964 IPR025997 Periplasmic binding protein domain YPK_0964 IPR028082 Periplasmic binding protein-like I YPK_0965 IPR001851 ABC transporter, permease YPK_0966 IPR003439 ABC transporter-like YPK_0966 IPR003593 AAA+ ATPase domain YPK_0966 IPR017871 ABC transporter, conserved site YPK_0966 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0967 IPR003439 ABC transporter-like YPK_0967 IPR003593 AAA+ ATPase domain YPK_0967 IPR008995 Molybdate/tungstate binding, C-terminal YPK_0967 IPR013611 Transport-associated OB, type 2 YPK_0967 IPR017871 ABC transporter, conserved site YPK_0967 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0968 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_0968 IPR006060 Maltose binding protein YPK_0970 IPR000515 MetI-like domain YPK_0970 IPR035906 YPK_0970 YPK_0971 IPR000515 MetI-like domain YPK_0971 IPR035906 YPK_0971 YPK_0972 IPR011683 Glycosyl hydrolase family 53 YPK_0972 IPR017853 Glycoside hydrolase, superfamily YPK_0973 IPR003476 Glycoside hydrolase, family 42 YPK_0973 IPR013529 Glycoside hydrolase, family 42, N-terminal YPK_0973 IPR013738 Beta-galactosidase trimerisation YPK_0973 IPR013739 Beta-galactosidase C-terminal YPK_0973 IPR013780 Glycosyl hydrolase, family 13, all-beta YPK_0973 IPR017853 Glycoside hydrolase, superfamily YPK_0973 IPR029062 Class I glutamine amidotransferase-like YPK_0974 IPR001996 Phosphotransferase system, IIB component, type 1 YPK_0974 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPK_0974 IPR036878 YPK_0974 YPK_0975 IPR003192 Porin, LamB type YPK_0975 IPR023738 Maltoporin YPK_0975 IPR036998 YPK_0975 YPK_0976 IPR000843 Transcription regulator HTH, LacI YPK_0976 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0976 IPR028082 Periplasmic binding protein-like I YPK_0977 IPR000322 Glycoside hydrolase, family 31 YPK_0977 IPR011013 Galactose mutarotase-like domain YPK_0977 IPR013780 Glycosyl hydrolase, family 13, all-beta YPK_0977 IPR017853 Glycoside hydrolase, superfamily YPK_0977 IPR025887 Glycoside hydrolase family 31, N-terminal domain YPK_0977 IPR033403 YPK_0977 YPK_0978 IPR011701 Major facilitator superfamily YPK_0978 IPR036259 YPK_0978 YPK_0979 IPR000843 Transcription regulator HTH, LacI YPK_0979 IPR010982 Lambda repressor-like, DNA-binding domain YPK_0979 IPR028082 Periplasmic binding protein-like I YPK_0981 IPR002818 ThiJ/PfpI YPK_0981 IPR029062 Class I glutamine amidotransferase-like YPK_0982 IPR000771 Ketose-bisphosphate aldolase, class-II YPK_0982 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY YPK_0982 IPR013785 Aldolase-type TIM barrel YPK_0983 IPR016624 Uncharacterised conserved protein UCP014753 YPK_0984 IPR000917 Sulfatase YPK_0984 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_0984 IPR017850 Alkaline-phosphatase-like, core domain YPK_0984 IPR024607 Sulfatase, conserved site YPK_0985 IPR007197 Radical SAM YPK_0985 IPR013785 Aldolase-type TIM barrel YPK_0985 IPR023885 4Fe4S-binding SPASM domain YPK_0986 IPR008928 Six-hairpin glycosidase-like YPK_0986 IPR010905 Glycosyl hydrolase, family 88 YPK_0986 IPR012341 Six-hairpin glycosidase YPK_0987 IPR002347 Glucose/ribitol dehydrogenase YPK_0987 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPK_0987 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_0987 IPR036291 YPK_0987 YPK_0988 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPK_0988 IPR006680 Amidohydrolase 1 YPK_0988 IPR011059 Metal-dependent hydrolase, composite domain YPK_0988 IPR032466 YPK_0988 YPK_0989 IPR004701 Phosphotransferase system, mannose-type IIA component YPK_0989 IPR036662 YPK_0989 YPK_0990 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPK_0991 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit YPK_0992 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPK_0992 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPK_0992 IPR036667 YPK_0992 YPK_0993 IPR001347 Sugar isomerase (SIS) YPK_0993 IPR014180 Sugar isomerase, AgaS YPK_0994 IPR012062 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit GatZ/KbaZ YPK_0994 IPR013785 Aldolase-type TIM barrel YPK_0995 IPR001034 HTH DeoR N-terminal domain YPK_0995 IPR014036 DeoR C-terminal sensor domain YPK_0995 IPR036388 YPK_0995 YPK_0995 IPR036390 YPK_0995 YPK_0995 IPR037171 YPK_0995 YPK_0996 IPR000917 Sulfatase YPK_0996 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_0996 IPR017850 Alkaline-phosphatase-like, core domain YPK_0997 IPR003159 Polysaccharide lyase family 8, central domain YPK_0997 IPR004103 Polysaccharide lyase family 8, C-terminal YPK_0997 IPR008929 Chondroitin AC/alginate lyase YPK_0997 IPR008979 Galactose-binding domain-like YPK_0997 IPR011013 Galactose mutarotase-like domain YPK_0997 IPR011071 Polysaccharide lyase family 8-like, C-terminal YPK_0997 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPK_0997 IPR015176 Lyase, N-terminal YPK_0997 IPR015177 Lyase, catalytic YPK_0997 IPR024200 Chondroitin sulfate ABC endolyase YPK_0998 IPR005546 Autotransporter beta-domain YPK_0998 IPR006315 Outer membrane autotransporter barrel YPK_0998 IPR036709 YPK_0998 YPK_0999 IPR031605 YPK_0999 YPK_1001 IPR001765 Carbonic anhydrase YPK_1001 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_1001 IPR036874 YPK_1001 YPK_1002 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1002 IPR036388 YPK_1002 YPK_1003 IPR024961 YPK_1003 YPK_1004 IPR001775 GspD/PilQ family YPK_1004 IPR004845 Type II secretion system GspD, conserved site YPK_1004 IPR004846 Type II/III secretion system YPK_1004 IPR005644 NolW-like YPK_1004 IPR013356 Type II secretion system GspD YPK_1004 IPR038591 YPK_1004 YPK_1005 IPR001482 Type II secretion system protein E YPK_1005 IPR003593 AAA+ ATPase domain YPK_1005 IPR013369 Type II secretion system GspE YPK_1005 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1005 IPR037257 YPK_1005 YPK_1006 IPR001992 Type II secretion system conserved site YPK_1006 IPR003004 GspF/PilC family YPK_1006 IPR018076 Type II secretion system F domain YPK_1007 IPR000983 Bacterial general secretion pathway protein G-type pilin YPK_1007 IPR010054 General secretion pathway protein G YPK_1007 IPR012902 Prokaryotic N-terminal methylation site YPK_1007 IPR013545 Type II secretion system protein G YPK_1008 IPR002416 Type II secretion system protein H YPK_1008 IPR012902 Prokaryotic N-terminal methylation site YPK_1009 IPR003413 Type II secretion system protein I domain YPK_1010 IPR010055 Type II secretion system protein J YPK_1010 IPR012902 Prokaryotic N-terminal methylation site YPK_1011 IPR005628 General secretion pathway protein K YPK_1011 IPR038072 YPK_1011 YPK_1012 IPR007812 Type II secretion system protein L YPK_1012 IPR024230 GspL, cytoplasmic actin-ATPase-like domain YPK_1012 IPR025691 GspL periplasmic domain YPK_1014 IPR000045 Prepilin type IV endopeptidase, peptidase domain YPK_1014 IPR010627 Peptidase A24A, N-terminal YPK_1014 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPK_1015 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPK_1015 IPR038432 YPK_1015 YPK_1016 IPR001867 Signal transduction response regulator, C-terminal YPK_1016 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1016 IPR036388 YPK_1016 YPK_1018 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding YPK_1018 IPR003660 HAMP linker domain YPK_1018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1018 IPR004090 Chemotaxis methyl-accepting receptor YPK_1018 IPR035440 YPK_1018 YPK_1019 IPR001853 DSBA-like thioredoxin domain YPK_1019 IPR036249 YPK_1019 YPK_1020 IPR001279 Beta-lactamase-like YPK_1020 IPR036866 YPK_1020 YPK_1021 IPR000847 Transcription regulator HTH, LysR YPK_1021 IPR005119 LysR, substrate-binding YPK_1021 IPR036388 YPK_1021 YPK_1021 IPR036390 YPK_1021 YPK_1022 IPR011701 Major facilitator superfamily YPK_1022 IPR036259 YPK_1022 YPK_1023 IPR000847 Transcription regulator HTH, LysR YPK_1023 IPR005119 LysR, substrate-binding YPK_1023 IPR036388 YPK_1023 YPK_1023 IPR036390 YPK_1023 YPK_1024 IPR000183 Ornithine/DAP/Arg decarboxylase YPK_1024 IPR002986 Diaminopimelate decarboxylase, LysA YPK_1024 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPK_1024 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal YPK_1024 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal YPK_1024 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPK_1024 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPK_1024 IPR029066 PLP-binding barrel YPK_1025 IPR000843 Transcription regulator HTH, LacI YPK_1025 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1025 IPR028082 Periplasmic binding protein-like I YPK_1026 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPK_1026 IPR006656 Molybdopterin oxidoreductase YPK_1026 IPR006657 Molydopterin dinucleotide-binding domain YPK_1026 IPR009010 Aspartate decarboxylase-like domain YPK_1027 IPR000873 AMP-dependent synthetase/ligase YPK_1027 IPR002123 Phospholipid/glycerol acyltransferase YPK_1027 IPR020845 AMP-binding, conserved site YPK_1027 IPR023775 Bifunctional 2-acylglycerophosphoethanolamine acyltransferase/acyl synthetase Aas YPK_1027 IPR025110 AMP-binding enzyme C-terminal domain YPK_1028 IPR011701 Major facilitator superfamily YPK_1028 IPR023727 Lysophospholipid transporter LplT YPK_1028 IPR036259 YPK_1028 YPK_1031 IPR023210 NADP-dependent oxidoreductase domain YPK_1031 IPR036812 YPK_1031 YPK_1032 IPR004230 DNA mismatch repair protein MutH YPK_1032 IPR011335 Restriction endonuclease type II-like YPK_1032 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II YPK_1032 IPR037057 YPK_1032 YPK_1033 IPR000086 NUDIX hydrolase domain YPK_1033 IPR015797 NUDIX hydrolase domain-like YPK_1033 IPR020084 NUDIX hydrolase, conserved site YPK_1033 IPR020476 NUDIX hydrolase YPK_1033 IPR022927 RNA pyrophosphohydrolase RppH YPK_1034 IPR000121 PEP-utilising enzyme, C-terminal YPK_1034 IPR003018 GAF domain YPK_1034 IPR006318 Phosphoenolpyruvate-utilising enzyme YPK_1034 IPR008279 PEP-utilising enzyme, mobile domain YPK_1034 IPR008731 Phosphotransferase system, enzyme I N-terminal YPK_1034 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_1034 IPR018274 PEP-utilising enzyme, active site YPK_1034 IPR023151 PEP-utilising enzyme, conserved site YPK_1034 IPR029016 GAF domain-like YPK_1034 IPR036618 YPK_1034 YPK_1034 IPR036637 YPK_1034 YPK_1035 IPR001640 Prolipoprotein diacylglyceryl transferase YPK_1036 IPR000398 Thymidylate synthase YPK_1036 IPR020940 Thymidylate synthase, active site YPK_1036 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain YPK_1036 IPR036926 YPK_1036 YPK_1037 IPR012902 Prokaryotic N-terminal methylation site YPK_1038 IPR012902 Prokaryotic N-terminal methylation site YPK_1038 IPR016419 Prepilin peptidase-dependent protein B, predicted YPK_1039 IPR019652 Protein of unknown function DUF2509 YPK_1040 IPR012902 Prokaryotic N-terminal methylation site YPK_1040 IPR022204 Prepilin peptidase dependent protein C YPK_1041 IPR006697 Exodeoxyribonuclease V, gamma subunit YPK_1041 IPR011335 Restriction endonuclease type II-like YPK_1041 IPR013986 DExx box DNA helicase domain YPK_1041 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1042 IPR001431 Peptidase M16, zinc-binding site YPK_1042 IPR007863 Peptidase M16, C-terminal domain YPK_1042 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPK_1042 IPR011765 Peptidase M16, N-terminal YPK_1042 IPR032632 YPK_1042 YPK_1043 IPR004586 Exodeoxyribonuclease V, beta subunit YPK_1043 IPR011335 Restriction endonuclease type II-like YPK_1043 IPR011604 Exonuclease, phage-type/RecB, C-terminal YPK_1043 IPR014017 DNA helicase, UvrD-like, C-terminal YPK_1043 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1043 IPR034739 YPK_1043 YPK_1044 IPR006344 Exodeoxyribonuclease V, alpha subunit YPK_1044 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1044 IPR027785 UvrD-like helicase C-terminal domain YPK_1045 IPR000182 GNAT domain YPK_1045 IPR001048 Aspartate/glutamate/uridylate kinase YPK_1045 IPR010167 Amino-acid N-acetyltransferase (ArgA) YPK_1045 IPR016181 Acyl-CoA N-acyltransferase YPK_1045 IPR036393 YPK_1045 YPK_1046 IPR002508 Cell wall hydrolase/autolysin, catalytic YPK_1046 IPR021731 AMIN domain YPK_1047 IPR005300 Lytic transglycosylase MltA YPK_1047 IPR010611 3D domain YPK_1047 IPR026044 Membrane-bound lytic murein transglycosylase A YPK_1047 IPR036908 YPK_1047 YPK_1048 IPR000594 UBA/THIF-type NAD/FAD binding fold YPK_1048 IPR035985 YPK_1048 YPK_1049 IPR003808 Fe-S metabolism associated domain, SufE-like YPK_1049 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YPK_1050 IPR000192 Aminotransferase class V domain YPK_1050 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1050 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1050 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1050 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YPK_1050 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA YPK_1051 IPR010305 Protein of unknown function DUF903 YPK_1051 IPR010920 Like-Sm (LSM) domain YPK_1052 IPR000847 Transcription regulator HTH, LysR YPK_1052 IPR005119 LysR, substrate-binding YPK_1052 IPR036388 YPK_1052 YPK_1052 IPR036390 YPK_1052 YPK_1053 IPR006696 Protein of unknown function DUF423 YPK_1054 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPK_1054 IPR011224 Ribosomal RNA large subunit methyltransferase M YPK_1054 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1055 IPR002421 5'-3' exonuclease, N-terminal YPK_1055 IPR008918 Helix-hairpin-helix motif, class 2 YPK_1055 IPR020045 5'-3' exonuclease, C-terminal domain YPK_1055 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPK_1055 IPR022895 Flap endonuclease Xni YPK_1055 IPR029060 PIN domain-like YPK_1055 IPR036279 YPK_1055 YPK_1056 IPR021826 Protein of unknown function DUF3412 YPK_1056 IPR027820 Domain of unknown function DUF4478 YPK_1056 IPR031100 YPK_1056 YPK_1056 IPR037153 YPK_1056 YPK_1057 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 YPK_1057 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal YPK_1057 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF YPK_1058 IPR009948 Syd YPK_1058 IPR038228 YPK_1058 YPK_1059 IPR007384 Protein of unknown function UCP006257 YPK_1059 IPR023376 YqcC-like domain YPK_1059 IPR036814 YPK_1059 YPK_1060 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPK_1060 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPK_1060 IPR020103 Pseudouridine synthase, catalytic domain YPK_1061 IPR001094 Flavodoxin YPK_1061 IPR008254 Flavodoxin/nitric oxide synthase YPK_1061 IPR029039 Flavoprotein-like YPK_1062 IPR020911 Uncharacterised protein family UPF0325 YPK_1063 IPR001451 Bacterial transferase hexapeptide repeat YPK_1063 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family YPK_1063 IPR011004 Trimeric LpxA-like YPK_1063 IPR018357 Hexapeptide transferase, conserved site YPK_1063 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 YPK_1063 IPR037133 YPK_1063 YPK_1064 IPR002912 ACT domain YPK_1064 IPR002934 Nucleotidyl transferase domain YPK_1064 IPR003607 HD/PDEase domain YPK_1064 IPR006674 HD domain YPK_1064 IPR010043 Protein-PII uridylyltransferase YPK_1064 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YPK_1065 IPR000994 Peptidase M24, structural domain YPK_1065 IPR001714 Peptidase M24, methionine aminopeptidase YPK_1065 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPK_1065 IPR036005 YPK_1065 YPK_1066 IPR001865 Ribosomal protein S2 YPK_1066 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid YPK_1066 IPR018130 Ribosomal protein S2, conserved site YPK_1066 IPR023591 Ribosomal protein S2, flavodoxin-like domain YPK_1067 IPR001816 Translation elongation factor EFTs/EF1B YPK_1067 IPR009060 UBA-like YPK_1067 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation YPK_1067 IPR018101 Translation elongation factor Ts, conserved site YPK_1067 IPR036402 YPK_1067 YPK_1068 IPR001048 Aspartate/glutamate/uridylate kinase YPK_1068 IPR011817 Uridylate kinase YPK_1068 IPR015963 Uridylate kinase, bacteria YPK_1068 IPR036393 YPK_1068 YPK_1069 IPR002661 Ribosome recycling factor YPK_1069 IPR023584 Ribosome recycling factor domain YPK_1069 IPR036191 YPK_1069 YPK_1070 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPK_1070 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal YPK_1070 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YPK_1070 IPR026877 DXP reductoisomerase C-terminal domain YPK_1070 IPR036169 YPK_1070 YPK_1070 IPR036291 YPK_1070 YPK_1071 IPR001441 Decaprenyl diphosphate synthase-like YPK_1071 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site YPK_1071 IPR036424 YPK_1071 YPK_1072 IPR000374 Phosphatidate cytidylyltransferase YPK_1073 IPR001478 PDZ domain YPK_1073 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase YPK_1073 IPR008915 Peptidase M50 YPK_1073 IPR036034 YPK_1073 YPK_1074 IPR000184 Bacterial surface antigen (D15) YPK_1074 IPR010827 Surface antigen variable number YPK_1074 IPR023707 Outer membrane protein assembly factor BamA YPK_1075 IPR005632 Chaperone protein Skp YPK_1075 IPR024930 Skp domain YPK_1076 IPR001451 Bacterial transferase hexapeptide repeat YPK_1076 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YPK_1076 IPR011004 Trimeric LpxA-like YPK_1076 IPR018357 Hexapeptide transferase, conserved site YPK_1076 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region YPK_1077 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPK_1077 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPK_1077 IPR029069 HotDog domain YPK_1078 IPR001451 Bacterial transferase hexapeptide repeat YPK_1078 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YPK_1078 IPR011004 Trimeric LpxA-like YPK_1078 IPR018357 Hexapeptide transferase, conserved site YPK_1078 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal YPK_1078 IPR037157 YPK_1078 YPK_1079 IPR003835 Glycosyl transferase, family 19 YPK_1080 IPR012337 Ribonuclease H-like domain YPK_1080 IPR022898 Ribonuclease HII YPK_1080 IPR024567 Ribonuclease HII/HIII domain YPK_1080 IPR036397 YPK_1080 YPK_1081 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPK_1081 IPR004013 PHP, C-terminal YPK_1081 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPK_1081 IPR004805 DNA polymerase III, alpha subunit YPK_1081 IPR011708 Bacterial DNA polymerase III, alpha subunit YPK_1081 IPR016195 Polymerase/histidinol phosphatase-like YPK_1081 IPR029460 DNA polymerase, helix-hairpin-helix motif YPK_1082 IPR001095 Acetyl-CoA carboxylase, alpha subunit YPK_1082 IPR029045 ClpP/crotonase-like domain YPK_1083 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPK_1083 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_1084 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase YPK_1084 IPR012094 Lysidine-tRNA(Ile) synthetase YPK_1084 IPR012795 Lysidine-tRNA(Ile) synthetase, N-terminal YPK_1084 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal YPK_1084 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1084 IPR015262 Lysidine-tRNA(Ile) synthetase, substrate-binding domain YPK_1085 IPR008168 Cytochrome c, class IC YPK_1085 IPR009056 Cytochrome c-like domain YPK_1085 IPR036909 YPK_1085 YPK_1086 IPR009778 Modulator of Rho-dependent transcription termination YPK_1086 IPR023534 Rof/RNase P-like YPK_1086 IPR038626 YPK_1086 YPK_1087 IPR009624 Uncharacterised protein family UPF0253 YPK_1088 IPR009822 YaeQ YPK_1088 IPR011335 Restriction endonuclease type II-like YPK_1088 IPR038590 YPK_1088 YPK_1089 IPR000352 Peptide chain release factor class I/class II YPK_1090 IPR007298 Copper resistance lipoprotein NlpE YPK_1090 IPR033450 YPK_1090 YPK_1090 IPR038139 YPK_1090 YPK_1091 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YPK_1091 IPR002316 Proline-tRNA ligase, class IIa YPK_1091 IPR004154 Anticodon-binding YPK_1091 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type YPK_1091 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPK_1091 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 YPK_1091 IPR036621 YPK_1091 YPK_1091 IPR036754 YPK_1091 YPK_1092 IPR023368 Uncharacterised protein family UPF0066, conserved site YPK_1092 IPR023370 TsaA-like domain YPK_1092 IPR036413 YPK_1092 YPK_1092 IPR036414 YPK_1092 YPK_1093 IPR030852 YPK_1093 YPK_1094 IPR004872 Lipoprotein NlpA family YPK_1095 IPR000515 MetI-like domain YPK_1095 IPR035906 YPK_1095 YPK_1096 IPR003439 ABC transporter-like YPK_1096 IPR003593 AAA+ ATPase domain YPK_1096 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria YPK_1096 IPR017871 ABC transporter, conserved site YPK_1096 IPR018449 NIL domain YPK_1096 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1097 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase YPK_1097 IPR006543 Histidinol-phosphate phosphatase YPK_1097 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPK_1097 IPR023214 HAD-like domain YPK_1097 IPR036412 YPK_1097 YPK_1101 IPR018170 Aldo/keto reductase, conserved site YPK_1101 IPR020471 Aldo/keto reductase subgroup YPK_1101 IPR023210 NADP-dependent oxidoreductase domain YPK_1101 IPR036812 YPK_1101 YPK_1104 IPR005135 Endonuclease/exonuclease/phosphatase YPK_1104 IPR036691 YPK_1104 YPK_1105 IPR000189 Prokaryotic transglycosylase, active site YPK_1105 IPR008258 Lytic transglycosylase-like SLT domain YPK_1105 IPR018392 LysM domain YPK_1105 IPR023346 Lysozyme-like domain YPK_1105 IPR036779 YPK_1105 YPK_1106 IPR001279 Beta-lactamase-like YPK_1106 IPR017782 Hydroxyacylglutathione hydrolase YPK_1106 IPR032282 YPK_1106 YPK_1106 IPR036866 YPK_1106 YPK_1107 IPR013216 Methyltransferase type 11 YPK_1107 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1108 IPR002156 Ribonuclease H domain YPK_1108 IPR012337 Ribonuclease H-like domain YPK_1108 IPR022892 Ribonuclease H YPK_1108 IPR036397 YPK_1108 YPK_1109 IPR006054 DNA polymerase III, epsilon subunit YPK_1109 IPR006309 DNA polymerase 3, epsilon subunit YPK_1109 IPR012337 Ribonuclease H-like domain YPK_1109 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_1109 IPR036397 YPK_1109 YPK_1110 IPR001248 Permease, cytosine/purines, uracil, thiamine, allantoin YPK_1110 IPR038271 YPK_1110 YPK_1111 IPR002509 Polysaccharide deacetylase YPK_1111 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPK_1111 IPR017625 Putative urate catabolism protein YPK_1113 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPK_1114 IPR000515 MetI-like domain YPK_1114 IPR035906 YPK_1114 YPK_1115 IPR000644 CBS domain YPK_1115 IPR003439 ABC transporter-like YPK_1115 IPR003593 AAA+ ATPase domain YPK_1115 IPR005892 Glycine betaine transport ATP-binding subunit YPK_1115 IPR017871 ABC transporter, conserved site YPK_1115 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1116 IPR000358 Ribonucleotide reductase small subunit YPK_1116 IPR009078 Ferritin-like superfamily YPK_1116 IPR012348 Ribonucleotide reductase-related YPK_1116 IPR026494 Ribonucleoside reductase subunit beta, NrdF YPK_1116 IPR030475 YPK_1116 YPK_1117 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPK_1117 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPK_1117 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPK_1117 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPK_1117 IPR013554 Ribonucleotide reductase N-terminal YPK_1117 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE YPK_1118 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPK_1118 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YPK_1118 IPR029039 Flavoprotein-like YPK_1119 IPR002109 Glutaredoxin YPK_1119 IPR011909 Glutaredoxin-like protein NrdH YPK_1119 IPR036249 YPK_1119 YPK_1120 IPR009435 Acid shock YPK_1120 IPR023497 Acid shock protein YPK_1121 IPR018994 Protein of unknown function DUF2002 YPK_1122 IPR009587 Protein of unknown function DUF1198 YPK_1123 IPR006983 MbeD/MobD-like YPK_1124 IPR002059 Cold-shock protein, DNA-binding YPK_1124 IPR011129 Cold shock protein YPK_1124 IPR012156 Cold shock, CspA YPK_1124 IPR012340 Nucleic acid-binding, OB-fold YPK_1124 IPR019844 Cold-shock conserved site YPK_1125 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_1125 IPR030678 YPK_1125 YPK_1126 IPR000515 MetI-like domain YPK_1126 IPR035906 YPK_1126 YPK_1127 IPR000515 MetI-like domain YPK_1127 IPR035906 YPK_1127 YPK_1128 IPR003439 ABC transporter-like YPK_1128 IPR003593 AAA+ ATPase domain YPK_1128 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1129 IPR003439 ABC transporter-like YPK_1129 IPR003593 AAA+ ATPase domain YPK_1129 IPR017871 ABC transporter, conserved site YPK_1129 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1131 IPR002026 Urease, gamma/gamma-beta subunit YPK_1131 IPR012010 Urease, gamma subunit YPK_1131 IPR036463 YPK_1131 YPK_1132 IPR002019 Urease, beta subunit YPK_1132 IPR036461 YPK_1132 YPK_1133 IPR005848 Urease, alpha subunit YPK_1133 IPR006680 Amidohydrolase 1 YPK_1133 IPR011059 Metal-dependent hydrolase, composite domain YPK_1133 IPR011612 Urease alpha-subunit, N-terminal domain YPK_1133 IPR017950 Urease active site YPK_1133 IPR029754 Urease nickel binding site YPK_1133 IPR032466 YPK_1133 YPK_1134 IPR004029 UreE urease accessory, N-terminal YPK_1134 IPR007864 Urease accessory protein UreE, C-terminal domain YPK_1134 IPR012406 Urease accessory protein UreE YPK_1134 IPR036118 YPK_1134 YPK_1135 IPR002639 Urease accessory protein UreF YPK_1135 IPR038277 YPK_1135 YPK_1136 IPR003495 CobW/HypB/UreG domain YPK_1136 IPR004400 Urease accessory protein UreG YPK_1136 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase YPK_1136 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1137 IPR002669 Urease accessory protein UreD YPK_1138 IPR004937 Urea transporter YPK_1138 IPR017807 Urea transporter, bacteria YPK_1138 IPR029020 Ammonium/urea transporter YPK_1139 IPR004688 Nickel/cobalt transporter, high-affinity, bacteria YPK_1139 IPR011541 Nickel/cobalt transporter, high-affinity YPK_1140 IPR010486 HNS-dependent expression A/B YPK_1140 IPR028623 HNS-dependent expression B YPK_1140 IPR036831 YPK_1140 YPK_1140 IPR038303 YPK_1140 YPK_1141 IPR003148 Regulator of K+ conductance, N-terminal YPK_1141 IPR013099 Two pore domain potassium channel domain YPK_1141 IPR036291 YPK_1141 YPK_1142 IPR003691 Putative fluoride ion transporter CrcB YPK_1143 IPR003691 Putative fluoride ion transporter CrcB YPK_1144 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPK_1144 IPR036095 YPK_1144 YPK_1145 IPR003352 Phosphotransferase system, EIIC YPK_1145 IPR004501 Phosphotransferase system, EIIC component, type 3 YPK_1145 IPR004796 Phosphotransferase system, cellobiose-type IIC component YPK_1146 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit YPK_1146 IPR036542 YPK_1146 YPK_1147 IPR009057 Homeodomain-like YPK_1147 IPR011051 RmlC-like cupin domain YPK_1147 IPR013096 Cupin 2, conserved barrel YPK_1147 IPR014710 RmlC-like jelly roll fold YPK_1147 IPR018060 DNA binding HTH domain, AraC-type YPK_1147 IPR018062 HTH domain AraC-type, conserved site YPK_1147 IPR020449 Transcription regulator HTH, AraC- type YPK_1148 IPR006879 Uncharacterised protein family UPF0249/HpnK YPK_1148 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPK_1148 IPR022948 Uncharacterised protein family UPF0249 YPK_1151 IPR005621 Regulation modulator SeqA YPK_1151 IPR010985 Ribbon-helix-helix YPK_1151 IPR013321 Arc-type ribbon-helix-helix YPK_1151 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain YPK_1151 IPR033761 YPK_1151 YPK_1151 IPR036835 YPK_1151 YPK_1152 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPK_1152 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPK_1152 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPK_1152 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPK_1152 IPR005852 Phosphoglucomutase, alpha-D-glucose specific YPK_1152 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPK_1152 IPR016066 Alpha-D-phosphohexomutase, conserved site YPK_1152 IPR036900 YPK_1152 YPK_1154 IPR000620 Drug/metabolite transporter YPK_1155 IPR001789 Signal transduction response regulator, receiver domain YPK_1155 IPR001867 Signal transduction response regulator, C-terminal YPK_1155 IPR011006 CheY-like superfamily YPK_1155 IPR036388 YPK_1155 YPK_1156 IPR003018 GAF domain YPK_1156 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_1156 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_1156 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal YPK_1156 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_1156 IPR025201 Sensor protein KdpD, transmembrane domain YPK_1156 IPR029016 GAF domain-like YPK_1156 IPR036097 YPK_1156 YPK_1156 IPR036890 YPK_1156 YPK_1156 IPR038318 YPK_1156 YPK_1157 IPR003820 Potassium-transporting ATPase C chain YPK_1158 IPR001757 Cation-transporting P-type ATPase YPK_1158 IPR006391 Potassium-transporting P-type ATPase, B chain, subfamily IA YPK_1158 IPR008250 P-type ATPase, A domain YPK_1158 IPR018303 P-type ATPase, phosphorylation site YPK_1158 IPR023298 P-type ATPase, transmembrane domain YPK_1158 IPR023299 P-type ATPase, cytoplasmic domain N YPK_1158 IPR036412 YPK_1158 YPK_1159 IPR004623 Potassium-transporting ATPase A chain YPK_1160 IPR019663 Uncharacterised protein YbfA YPK_1162 IPR013560 Domain of unknown function DUF1722 YPK_1163 IPR002081 Cryptochrome/DNA photolyase, class 1 YPK_1163 IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal YPK_1163 IPR006050 DNA photolyase, N-terminal YPK_1163 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1163 IPR018394 Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal YPK_1163 IPR036134 YPK_1163 YPK_1163 IPR036155 YPK_1163 YPK_1164 IPR000396 Cyclic-AMP phosphodiesterase, class-II YPK_1164 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site YPK_1164 IPR036866 YPK_1164 YPK_1165 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YPK_1165 IPR036069 YPK_1165 YPK_1167 IPR003833 Allophanate hydrolase subunit 1 YPK_1167 IPR010016 Sensor histidine kinase inhibitor, KipI family YPK_1167 IPR029000 Cyclophilin-like domain YPK_1168 IPR003778 Allophanate hydrolase subunit 2 YPK_1168 IPR029000 Cyclophilin-like domain YPK_1169 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF YPK_1169 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPK_1170 IPR010374 Protein of unknown function DUF969 YPK_1171 IPR009323 Protein of unknown function DUF979 YPK_1172 IPR000816 Peptidase C15, pyroglutamyl peptidase I YPK_1172 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like YPK_1172 IPR029762 Pyroglutamyl peptidase I, bacterial-type YPK_1172 IPR033693 YPK_1172 YPK_1172 IPR033694 YPK_1172 YPK_1172 IPR036440 YPK_1172 YPK_1173 IPR002043 Uracil-DNA glycosylase YPK_1173 IPR005122 Uracil-DNA glycosylase-like YPK_1173 IPR018085 Uracil-DNA glycosylase, active site YPK_1173 IPR036895 YPK_1173 YPK_1174 IPR001150 Glycine radical domain YPK_1174 IPR011140 Autonomous glycyl radical cofactor GrcA YPK_1174 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPK_1175 IPR024499 Protein of unknown function DUF2974 YPK_1175 IPR029058 Alpha/Beta hydrolase fold YPK_1177 IPR002110 Ankyrin repeat YPK_1177 IPR036770 YPK_1177 YPK_1179 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPK_1179 IPR001650 Helicase, C-terminal YPK_1179 IPR011545 DEAD/DEAH box helicase domain YPK_1179 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_1179 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1179 IPR028621 ATP-dependent RNA helicase SrmB YPK_1180 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_1180 IPR007848 Methyltransferase small domain YPK_1180 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase YPK_1180 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1181 IPR003953 FAD binding domain YPK_1181 IPR005288 L-aspartate oxidase YPK_1181 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPK_1181 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain YPK_1181 IPR036188 YPK_1181 YPK_1181 IPR037099 YPK_1181 YPK_1182 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site YPK_1182 IPR007627 RNA polymerase sigma-70 region 2 YPK_1182 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 YPK_1182 IPR013324 RNA polymerase sigma factor, region 3/4 YPK_1182 IPR013325 RNA polymerase sigma factor, region 2 YPK_1182 IPR014284 RNA polymerase sigma-70 like domain YPK_1182 IPR014286 RNA polymerase sigma-70 RpoE type YPK_1182 IPR036388 YPK_1182 YPK_1183 IPR005572 Anti sigma-E protein RseA, N-terminal YPK_1183 IPR005573 Anti sigma-E protein RseA, C-terminal YPK_1183 IPR026279 Sigma-E factor negative regulatory protein RseA YPK_1183 IPR036147 YPK_1183 YPK_1184 IPR005588 MucB/RseB YPK_1184 IPR033434 YPK_1184 YPK_1184 IPR033436 YPK_1184 YPK_1184 IPR038484 YPK_1184 YPK_1185 IPR026268 Protein RseC YPK_1187 IPR000640 Translation elongation factor EFG, V domain YPK_1187 IPR000795 Elongation factor, GTP-binding domain YPK_1187 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPK_1187 IPR005225 Small GTP-binding protein domain YPK_1187 IPR006297 Elongation factor 4 YPK_1187 IPR013842 GTP-binding protein LepA, C-terminal YPK_1187 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1187 IPR031157 YPK_1187 YPK_1187 IPR035647 YPK_1187 YPK_1187 IPR038363 YPK_1187 YPK_1188 IPR000223 Peptidase S26A, signal peptidase I YPK_1188 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_1188 IPR019533 Peptidase S26 YPK_1188 IPR019756 Peptidase S26A, signal peptidase I, serine active site YPK_1188 IPR019757 Peptidase S26A, signal peptidase I, lysine active site YPK_1188 IPR019758 Peptidase S26A, signal peptidase I, conserved site YPK_1188 IPR036286 YPK_1188 YPK_1189 IPR000999 Ribonuclease III domain YPK_1189 IPR011907 Ribonuclease III YPK_1189 IPR014720 Double-stranded RNA-binding domain YPK_1189 IPR036389 YPK_1189 YPK_1190 IPR004044 K Homology domain, type 2 YPK_1190 IPR005225 Small GTP-binding protein domain YPK_1190 IPR005662 GTP-binding protein Era YPK_1190 IPR006073 GTP binding domain YPK_1190 IPR009019 K homology domain, prokaryotic type YPK_1190 IPR015946 K homology domain-like, alpha/beta YPK_1190 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1191 IPR003717 Recombination protein O, RecO YPK_1191 IPR012340 Nucleic acid-binding, OB-fold YPK_1191 IPR022572 DNA replication/recombination mediator RecO, N-terminal YPK_1191 IPR037278 YPK_1191 YPK_1192 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YPK_1192 IPR013785 Aldolase-type TIM barrel YPK_1192 IPR036130 YPK_1192 YPK_1193 IPR002582 Holo-[acyl carrier protein] synthase YPK_1193 IPR004568 Phosphopantethiene-protein transferase domain YPK_1193 IPR008278 4'-phosphopantetheinyl transferase superfamily YPK_1193 IPR037143 YPK_1193 YPK_1195 IPR002104 Integrase, catalytic YPK_1195 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_1195 IPR013762 Integrase-like, catalytic core YPK_1197 IPR000330 SNF2-related YPK_1197 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_1197 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1197 IPR038718 YPK_1197 YPK_1198 IPR005039 Antirepressor protein, C-terminal YPK_1198 IPR014054 Bacteriophage regulatory protein, Rha family YPK_1200 IPR005569 Arc-like DNA binding YPK_1200 IPR010985 Ribbon-helix-helix YPK_1200 IPR013321 Arc-type ribbon-helix-helix YPK_1201 IPR005569 Arc-like DNA binding YPK_1201 IPR010985 Ribbon-helix-helix YPK_1201 IPR013321 Arc-type ribbon-helix-helix YPK_1202 IPR011856 tRNA endonuclease-like domain YPK_1202 IPR014883 VRR-NUC domain YPK_1204 IPR001098 DNA-directed DNA polymerase, family A, palm domain YPK_1204 IPR012337 Ribonuclease H-like domain YPK_1204 IPR036397 YPK_1204 YPK_1205 IPR019276 Bacteriophage VT2phi272, P20 YPK_1207 IPR012340 Nucleic acid-binding, OB-fold YPK_1207 IPR022595 Protein of unknown function DUF2815 YPK_1208 IPR021229 Protein of unknown function DUF2800 YPK_1210 IPR001387 Cro/C1-type helix-turn-helix domain YPK_1210 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1210 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_1210 IPR036286 YPK_1210 YPK_1211 IPR001387 Cro/C1-type helix-turn-helix domain YPK_1211 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1212 IPR007936 Virulence-associated E YPK_1213 IPR010324 Dam-replacing YPK_1214 IPR010534 Bacteriophage 933W, GpQ YPK_1214 IPR013324 RNA polymerase sigma factor, region 3/4 YPK_1215 IPR006481 Bacteriophage lambda, GpS, holin YPK_1217 IPR006481 Bacteriophage lambda, GpS, holin YPK_1218 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPK_1218 IPR039561 YPK_1218 YPK_1220 IPR005335 Terminase small subunit YPK_1220 IPR038713 YPK_1220 YPK_1221 IPR001387 Cro/C1-type helix-turn-helix domain YPK_1221 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1223 IPR024459 Protein of unknown function DUF1073 YPK_1224 IPR006528 Phage head morphogenesis domain YPK_1225 IPR016913 Uncharacterised conserved protein UCP029215 YPK_1227 IPR020049 Protein of unknown function DUF2184 YPK_1229 IPR025127 Protein of unknown function DUF4054 YPK_1233 IPR021808 Bacteriophage rv5, Orf53 YPK_1240 IPR037026 YPK_1240 YPK_1242 IPR006949 Baseplate assembly protein J-like, predicted YPK_1243 IPR021283 Protein of unknown function DUF2612 YPK_1243 IPR032675 YPK_1243 YPK_1245 IPR003343 Bacterial Ig-like, group 2 YPK_1247 IPR021225 Protein of unknown function DUF2778 YPK_1248 IPR000281 Helix-turn-helix protein RpiR YPK_1248 IPR001347 Sugar isomerase (SIS) YPK_1248 IPR009057 Homeodomain-like YPK_1248 IPR036388 YPK_1248 YPK_1249 IPR001347 Sugar isomerase (SIS) YPK_1249 IPR005486 Glucokinase regulatory protein, conserved site YPK_1249 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ YPK_1249 IPR009060 UBA-like YPK_1250 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB YPK_1250 IPR023214 HAD-like domain YPK_1250 IPR036412 YPK_1250 YPK_1251 IPR016192 APOBEC/CMP deaminase, zinc-binding YPK_1251 IPR016193 Cytidine deaminase-like YPK_1251 IPR028883 tRNA-specific adenosine deaminase YPK_1252 IPR000189 Prokaryotic transglycosylase, active site YPK_1252 IPR001638 Extracellular solute-binding protein, family 3 YPK_1252 IPR008258 Lytic transglycosylase-like SLT domain YPK_1252 IPR023346 Lysozyme-like domain YPK_1252 IPR023703 Membrane-bound lytic murein transglycosylase F YPK_1253 IPR010073 Phosphoribosylformylglycinamidine synthase YPK_1253 IPR010918 AIR synthase-related protein, C-terminal domain YPK_1253 IPR029062 Class I glutamine amidotransferase-like YPK_1253 IPR036604 YPK_1253 YPK_1253 IPR036676 YPK_1253 YPK_1253 IPR036921 YPK_1253 YPK_1257 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_1257 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_1257 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_1257 IPR036097 YPK_1257 YPK_1257 IPR036890 YPK_1257 YPK_1258 IPR025262 Quorum-sensing regulator protein G YPK_1259 IPR001789 Signal transduction response regulator, receiver domain YPK_1259 IPR002078 RNA polymerase sigma factor 54 interaction domain YPK_1259 IPR003593 AAA+ ATPase domain YPK_1259 IPR009057 Homeodomain-like YPK_1259 IPR011006 CheY-like superfamily YPK_1259 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_1259 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_1259 IPR025944 Sigma-54 interaction domain, conserved site YPK_1259 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1261 IPR000132 Nitrilase/cyanide hydratase, conserved site YPK_1261 IPR003010 Carbon-nitrogen hydrolase YPK_1261 IPR003694 NAD(+) synthetase YPK_1261 IPR014445 Glutamine-dependent NAD(+) synthetase YPK_1261 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1261 IPR022310 NAD/GMP synthase YPK_1261 IPR036526 YPK_1261 YPK_1262 IPR002187 Nitrogen regulatory protein PII YPK_1262 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPK_1262 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPK_1262 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPK_1262 IPR017918 Nitrogen regulatory protein PII, conserved site YPK_1263 IPR032791 YPK_1263 YPK_1263 IPR036388 YPK_1263 YPK_1263 IPR036390 YPK_1263 YPK_1264 IPR000971 Globin YPK_1264 IPR001221 Phenol hydroxylase reductase YPK_1264 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPK_1264 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPK_1264 IPR008333 Oxidoreductase, FAD-binding domain YPK_1264 IPR009050 Globin-like YPK_1264 IPR012292 Globin, structural domain YPK_1264 IPR017938 Riboflavin synthase-like beta-barrel YPK_1264 IPR023950 Flavohemoprotein YPK_1264 IPR039261 YPK_1264 YPK_1265 IPR001085 Serine hydroxymethyltransferase YPK_1265 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1265 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1265 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1265 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site YPK_1265 IPR039429 YPK_1265 YPK_1268 IPR000758 Virulence-related outer membrane protein YPK_1268 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_1268 IPR027385 Outer membrane protein beta-barrel YPK_1269 IPR024989 Major facilitator superfamily associated domain YPK_1269 IPR026032 Phenylproprionate/maltose permease YPK_1269 IPR036259 YPK_1269 YPK_1270 IPR011608 PRD domain YPK_1270 IPR036634 YPK_1270 YPK_1271 IPR010412 Protein of unknown function DUF1007 YPK_1271 IPR016537 Uncharacterised conserved protein UCP008159, YPK_1272 IPR011541 Nickel/cobalt transporter, high-affinity YPK_1273 IPR000760 Inositol monophosphatase YPK_1273 IPR020550 Inositol monophosphatase, conserved site YPK_1273 IPR020583 Inositol monophosphatase, metal-binding site YPK_1273 IPR022337 Inositol monophosphatase, SuhB YPK_1274 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPK_1274 IPR004384 RNA methyltransferase TrmH, group 1 YPK_1274 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_1274 IPR029028 Alpha/beta knot methyltransferases YPK_1275 IPR000944 Transcription regulator Rrf2-like YPK_1275 IPR010242 Transcription factor HTH, IscR YPK_1275 IPR030489 YPK_1275 YPK_1275 IPR036388 YPK_1275 YPK_1275 IPR036390 YPK_1275 YPK_1276 IPR000192 Aminotransferase class V domain YPK_1276 IPR010240 Cysteine desulfurase YPK_1276 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1276 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1276 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1276 IPR016454 Cysteine desulfurase, NifS YPK_1276 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YPK_1277 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal YPK_1277 IPR011339 ISC system FeS cluster assembly, IscU scaffold YPK_1278 IPR000361 FeS cluster biogenesis YPK_1278 IPR011302 ISC system FeS cluster assembly, IscA scaffold YPK_1278 IPR016092 FeS cluster insertion protein YPK_1278 IPR017870 FeS cluster insertion, C-terminal, conserved site YPK_1278 IPR035903 YPK_1278 YPK_1279 IPR001623 DnaJ domain YPK_1279 IPR004640 Co-chaperone Hsc20 YPK_1279 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain YPK_1279 IPR036386 YPK_1279 YPK_1279 IPR036869 YPK_1279 YPK_1280 IPR010236 ISC system FeS cluster assembly, HscA chaperone YPK_1280 IPR013126 Heat shock protein 70 family YPK_1280 IPR018181 Heat shock protein 70, conserved site YPK_1280 IPR029047 Heat shock protein 70kD, peptide-binding domain YPK_1280 IPR029048 Heat shock protein 70kD, C-terminal domain YPK_1281 IPR001041 2Fe-2S ferredoxin-type domain YPK_1281 IPR001055 Adrenodoxin YPK_1281 IPR011536 Ferredoxin, 2Fe-2S type YPK_1281 IPR012675 Beta-grasp domain YPK_1281 IPR018298 Adrenodoxin, iron-sulphur binding site YPK_1281 IPR036010 YPK_1281 YPK_1282 IPR007479 ISC system FeS cluster assembly, IscX YPK_1282 IPR036762 YPK_1282 YPK_1284 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPK_1284 IPR008330 Peptidase M17, peptidase B YPK_1284 IPR011356 Leucine aminopeptidase/peptidase B YPK_1285 IPR009839 SseB protein N-terminal domain YPK_1285 IPR027945 SseB protein, C-terminal YPK_1286 IPR003991 Pertactin virulence factor family YPK_1286 IPR004899 Pertactin, central region YPK_1286 IPR005546 Autotransporter beta-domain YPK_1286 IPR006315 Outer membrane autotransporter barrel YPK_1286 IPR011050 Pectin lyase fold/virulence factor YPK_1286 IPR012332 P22 tailspike C-terminal domain-like YPK_1286 IPR036709 YPK_1286 YPK_1287 IPR004899 Pertactin, central region YPK_1287 IPR011050 Pectin lyase fold/virulence factor YPK_1287 IPR012332 P22 tailspike C-terminal domain-like YPK_1288 IPR001064 Beta/gamma crystallin YPK_1288 IPR011024 Gamma-crystallin-related YPK_1288 IPR015059 Calcium-dependent cell adhesion molecule, N-terminal YPK_1288 IPR015185 Exotoxin A, binding YPK_1289 IPR001564 Nucleoside diphosphate kinase YPK_1289 IPR023005 Nucleoside diphosphate kinase, active site YPK_1289 IPR034907 YPK_1289 YPK_1289 IPR036850 YPK_1289 YPK_1290 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr YPK_1290 IPR007197 Radical SAM YPK_1290 IPR013785 Aldolase-type TIM barrel YPK_1290 IPR027492 Dual-specificity RNA methyltransferase RlmN YPK_1291 IPR011990 Tetratricopeptide-like helical domain YPK_1291 IPR013360 Pilus biogenesis/stability type IV, PilW YPK_1291 IPR019734 Tetratricopeptide repeat YPK_1292 IPR001387 Cro/C1-type helix-turn-helix domain YPK_1292 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1292 IPR023690 Cytoskeleton protein RodZ YPK_1292 IPR025194 Domain of unknown function DUF4115 YPK_1293 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YPK_1293 IPR011005 Dihydropteroate synthase-like YPK_1293 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial YPK_1293 IPR036849 YPK_1293 YPK_1294 IPR004154 Anticodon-binding YPK_1294 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit YPK_1294 IPR015807 Histidine-tRNA ligase YPK_1294 IPR036621 YPK_1294 YPK_1295 IPR011990 Tetratricopeptide-like helical domain YPK_1295 IPR018704 Domain of unknown function DUF09976 YPK_1295 IPR026039 Uncharacterised protein family UPF0070 YPK_1296 IPR002372 Pyrrolo-quinoline quinone repeat YPK_1296 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily YPK_1296 IPR015943 WD40/YVTN repeat-like-containing domain YPK_1296 IPR017687 Outer membrane protein assembly factor BamB YPK_1296 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPK_1297 IPR005225 Small GTP-binding protein domain YPK_1297 IPR006073 GTP binding domain YPK_1297 IPR015946 K homology domain-like, alpha/beta YPK_1297 IPR016484 GTP-binding protein EngA YPK_1297 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1297 IPR032859 YPK_1297 YPK_1298 IPR004776 Auxin efflux carrier YPK_1298 IPR038770 YPK_1298 YPK_1299 IPR010807 Protein of unknown function DUF1407 YPK_1299 IPR029037 YfgJ-like YPK_1301 IPR003753 Exonuclease VII, large subunit YPK_1301 IPR020579 Exonuclease VII, large subunit, C-terminal YPK_1301 IPR025824 OB-fold nucleic acid binding domain YPK_1302 IPR000644 CBS domain YPK_1302 IPR001093 IMP dehydrogenase/GMP reductase YPK_1302 IPR005990 Inosine-5'-monophosphate dehydrogenase YPK_1302 IPR013785 Aldolase-type TIM barrel YPK_1302 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPK_1303 IPR001674 GMP synthase, C-terminal YPK_1303 IPR004739 GMP synthase, N-terminal YPK_1303 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1303 IPR017926 Glutamine amidotransferase YPK_1303 IPR022310 NAD/GMP synthase YPK_1303 IPR022955 GMP synthase YPK_1303 IPR029062 Class I glutamine amidotransferase-like YPK_1304 IPR008514 Type VI secretion system effector, Hcp YPK_1304 IPR036624 YPK_1304 YPK_1305 IPR010665 Protein of unknown function DUF1240 YPK_1307 IPR010665 Protein of unknown function DUF1240 YPK_1308 IPR010665 Protein of unknown function DUF1240 YPK_1309 IPR010665 Protein of unknown function DUF1240 YPK_1311 IPR011024 Gamma-crystallin-related YPK_1315 IPR003344 Bacterial Ig-like, group 1 YPK_1315 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPK_1315 IPR003599 Immunoglobulin subtype YPK_1315 IPR008964 Invasin/intimin cell-adhesion YPK_1315 IPR013783 Immunoglobulin-like fold YPK_1315 IPR015217 Invasin, domain 3 YPK_1315 IPR024519 Domain of unknown function DUF3442, intimin/invasin YPK_1315 IPR036779 YPK_1315 YPK_1315 IPR038177 YPK_1315 YPK_1316 IPR003220 InsA N-terminal domain YPK_1317 IPR010351 Protein of unknown function DUF943 YPK_1321 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase YPK_1321 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPK_1321 IPR029056 Ribokinase-like YPK_1323 IPR014453 Inhibitor of vertebrate lysozyme YPK_1323 IPR036501 YPK_1323 YPK_1324 IPR001206 Diacylglycerol kinase, catalytic domain YPK_1324 IPR005218 Diacylglycerol/lipid kinase YPK_1324 IPR016064 ATP-NAD kinase-like domain YPK_1324 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 YPK_1324 IPR022433 Lipid kinase YegS YPK_1325 IPR001539 Peptidase U32 YPK_1325 IPR032525 YPK_1325 YPK_1326 IPR010879 Domain of unknown function DUF1508 YPK_1326 IPR036913 YPK_1326 YPK_1327 IPR001789 Signal transduction response regulator, receiver domain YPK_1327 IPR001867 Signal transduction response regulator, C-terminal YPK_1327 IPR011006 CheY-like superfamily YPK_1327 IPR036388 YPK_1327 YPK_1328 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_1328 IPR003660 HAMP linker domain YPK_1328 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_1328 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_1328 IPR036097 YPK_1328 YPK_1328 IPR036890 YPK_1328 YPK_1329 IPR004638 Drug resistance transporter EmrB/QacA subfamily YPK_1329 IPR011701 Major facilitator superfamily YPK_1329 IPR023721 Multidrug resistance protein MdtD, putative YPK_1329 IPR036259 YPK_1329 YPK_1330 IPR001036 Acriflavin resistance protein YPK_1330 IPR023931 Multidrug resistance protein MdtC YPK_1330 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1331 IPR001036 Acriflavin resistance protein YPK_1331 IPR022831 Multidrug resistance protein MdtB YPK_1331 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1332 IPR006143 RND efflux pump, membrane fusion protein YPK_1332 IPR022824 Multidrug resistance protein MdtA YPK_1332 IPR039562 YPK_1332 YPK_1333 IPR003439 ABC transporter-like YPK_1333 IPR003593 AAA+ ATPase domain YPK_1333 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPK_1333 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1333 IPR013611 Transport-associated OB, type 2 YPK_1333 IPR017871 ABC transporter, conserved site YPK_1333 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1334 IPR000524 Transcription regulator HTH, GntR YPK_1334 IPR004839 Aminotransferase, class I/classII YPK_1334 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1334 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1334 IPR036388 YPK_1334 YPK_1334 IPR036390 YPK_1334 YPK_1335 IPR004632 4-aminobutyrate aminotransferase, bacterial YPK_1335 IPR005814 Aminotransferase class-III YPK_1335 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1335 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1335 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1336 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_1337 IPR000515 MetI-like domain YPK_1337 IPR035906 YPK_1337 YPK_1338 IPR000515 MetI-like domain YPK_1338 IPR035906 YPK_1338 YPK_1340 IPR013126 Heat shock protein 70 family YPK_1340 IPR018181 Heat shock protein 70, conserved site YPK_1341 IPR000644 CBS domain YPK_1341 IPR006667 SLC41 divalent cation transporters, integral membrane domain YPK_1341 IPR006668 Magnesium transporter, MgtE intracellular domain YPK_1341 IPR006669 Magnesium transporter MgtE YPK_1341 IPR036739 YPK_1341 YPK_1341 IPR038048 YPK_1341 YPK_1341 IPR038076 YPK_1341 YPK_1342 IPR022576 Protein of unknown function DUF2633 YPK_1343 IPR003695 Ppx/GppA phosphatase YPK_1343 IPR022371 Exopolyphosphatase YPK_1343 IPR030673 YPK_1343 YPK_1344 IPR003414 Polyphosphate kinase YPK_1344 IPR024953 Polyphosphate kinase middle domain YPK_1344 IPR025198 Polyphosphate kinase N-terminal domain YPK_1344 IPR025200 Polyphosphate kinase C-terminal domain YPK_1344 IPR036830 YPK_1344 YPK_1344 IPR036832 YPK_1344 YPK_1345 IPR000515 MetI-like domain YPK_1345 IPR035906 YPK_1345 YPK_1346 IPR000515 MetI-like domain YPK_1346 IPR005672 Phosphate transport system permease protein PstA YPK_1346 IPR035906 YPK_1346 YPK_1347 IPR003439 ABC transporter-like YPK_1347 IPR003593 AAA+ ATPase domain YPK_1347 IPR005670 Phosphate transport system permease protein 1 YPK_1347 IPR017871 ABC transporter, conserved site YPK_1347 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1348 IPR005358 Putative zinc- or iron-chelating domain containing protein YPK_1348 IPR020193 Flagellin lysine-N-methylase, C-terminal YPK_1349 IPR000182 GNAT domain YPK_1349 IPR016181 Acyl-CoA N-acyltransferase YPK_1350 IPR001555 Phosphoribosylglycinamide formyltransferase, active site YPK_1350 IPR002376 Formyl transferase, N-terminal YPK_1350 IPR004607 Phosphoribosylglycinamide formyltransferase YPK_1350 IPR036477 YPK_1350 YPK_1351 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YPK_1351 IPR010918 AIR synthase-related protein, C-terminal domain YPK_1351 IPR016188 PurM, N-terminal-like YPK_1351 IPR036676 YPK_1351 YPK_1351 IPR036921 YPK_1351 YPK_1352 IPR005765 Uracil phosphoribosyl transferase YPK_1352 IPR029057 Phosphoribosyltransferase-like YPK_1352 IPR034332 YPK_1352 YPK_1353 IPR006042 Xanthine/uracil permease YPK_1353 IPR006043 Xanthine/uracil/vitamin C permease YPK_1354 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) YPK_1354 IPR017788 DnaA regulatory inactivator Hda YPK_1354 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_1354 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YPK_1354 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1355 IPR006659 Arsenate reductase YPK_1355 IPR006660 Arsenate reductase-like YPK_1355 IPR036249 YPK_1355 YPK_1356 IPR001915 Peptidase M48 YPK_1356 IPR011716 Tetratricopeptide TPR-3 YPK_1356 IPR011990 Tetratricopeptide-like helical domain YPK_1356 IPR030873 YPK_1356 YPK_1357 IPR002549 Uncharacterised protein family UPF0118 YPK_1360 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPK_1360 IPR024706 Peroxiredoxin, AhpC-type YPK_1360 IPR036249 YPK_1360 YPK_1361 IPR016867 Glycine cleavage repressor GcvR YPK_1362 IPR002220 DapA-like YPK_1362 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA YPK_1362 IPR013785 Aldolase-type TIM barrel YPK_1362 IPR020624 Dihydrodipicolinate synthetase, conserved site YPK_1362 IPR020625 Dihydrodipicolinate synthetase, active site YPK_1363 IPR010653 Lipoprotein, NlpB YPK_1363 IPR014524 Outer membrane protein assembly factor BamC YPK_1364 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase YPK_1364 IPR018236 SAICAR synthetase, conserved site YPK_1364 IPR028923 SAICAR synthetase/ADE2, N-terminal YPK_1366 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YPK_1367 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPK_1368 IPR000182 GNAT domain YPK_1368 IPR007807 Helicase domain YPK_1368 IPR013562 Domain of unknown function DUF1726 YPK_1368 IPR016181 Acyl-CoA N-acyltransferase YPK_1368 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA YPK_1368 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1368 IPR033442 YPK_1368 YPK_1368 IPR038321 YPK_1368 YPK_1370 IPR020910 Uncharacterised protein family UPF0370 YPK_1371 IPR003709 Peptidase M15B/M15C YPK_1371 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPK_1372 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPK_1372 IPR002933 Peptidase M20 YPK_1372 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria YPK_1372 IPR011650 Peptidase M20, dimerisation domain YPK_1372 IPR036264 YPK_1372 YPK_1373 IPR006504 Transcriptional regulator Spx/MgsR YPK_1373 IPR006660 Arsenate reductase-like YPK_1373 IPR036249 YPK_1373 YPK_1374 IPR011990 Tetratricopeptide-like helical domain YPK_1375 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_1376 IPR000515 MetI-like domain YPK_1376 IPR035906 YPK_1376 YPK_1377 IPR003439 ABC transporter-like YPK_1377 IPR003593 AAA+ ATPase domain YPK_1377 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1377 IPR017871 ABC transporter, conserved site YPK_1377 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1378 IPR000917 Sulfatase YPK_1378 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_1378 IPR017850 Alkaline-phosphatase-like, core domain YPK_1378 IPR024607 Sulfatase, conserved site YPK_1379 IPR007197 Radical SAM YPK_1379 IPR013785 Aldolase-type TIM barrel YPK_1379 IPR023885 4Fe4S-binding SPASM domain YPK_1380 IPR007404 Protein of unknown function DUF457 YPK_1382 IPR001036 Acriflavin resistance protein YPK_1382 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPK_1382 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1383 IPR017162 Uncharacterised conserved protein UCP037266 YPK_1383 IPR036388 YPK_1383 YPK_1384 IPR000792 Transcription regulator LuxR, C-terminal YPK_1384 IPR001789 Signal transduction response regulator, receiver domain YPK_1384 IPR011006 CheY-like superfamily YPK_1384 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1385 IPR004496 Ferredoxin-type protein NapF YPK_1385 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1385 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1386 IPR005623 Chaperone NapD, nitrate reductase assembly YPK_1387 IPR006656 Molybdopterin oxidoreductase YPK_1387 IPR006657 Molydopterin dinucleotide-binding domain YPK_1387 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPK_1387 IPR009010 Aspartate decarboxylase-like domain YPK_1387 IPR010051 Periplasmic nitrate reductase, large subunit YPK_1387 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_1387 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPK_1388 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YPK_1388 IPR036280 YPK_1388 YPK_1389 IPR005126 NapC/NirT cytochrome c, N-terminal YPK_1389 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT YPK_1389 IPR024717 Denitrification system component NapC/NirT/NrfH YPK_1389 IPR036280 YPK_1389 YPK_1389 IPR038266 YPK_1389 YPK_1390 IPR000086 NUDIX hydrolase domain YPK_1390 IPR004385 Nucleoside diphosphate pyrophosphatase YPK_1390 IPR015797 NUDIX hydrolase domain-like YPK_1391 IPR002505 Phosphate acetyl/butaryl transferase YPK_1391 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase YPK_1391 IPR012301 Malic enzyme, N-terminal domain YPK_1391 IPR012302 Malic enzyme, NAD-binding YPK_1391 IPR015884 Malic enzyme, conserved site YPK_1391 IPR036291 YPK_1391 YPK_1391 IPR037062 YPK_1391 YPK_1392 IPR003791 Protein of unknown function UPF0178 YPK_1393 IPR001260 Coproporphyrinogen III oxidase, aerobic YPK_1393 IPR018375 Coproporphyrinogen III oxidase, conserved site YPK_1393 IPR036406 YPK_1393 YPK_1394 IPR000182 GNAT domain YPK_1394 IPR016181 Acyl-CoA N-acyltransferase YPK_1394 IPR023072 Acetyltransferase, YpeA YPK_1396 IPR003991 Pertactin virulence factor family YPK_1396 IPR004899 Pertactin, central region YPK_1396 IPR005546 Autotransporter beta-domain YPK_1396 IPR006315 Outer membrane autotransporter barrel YPK_1396 IPR011050 Pectin lyase fold/virulence factor YPK_1396 IPR012332 P22 tailspike C-terminal domain-like YPK_1396 IPR036709 YPK_1396 YPK_1397 IPR005220 Viral OB-fold, YgiW YPK_1397 IPR016052 Bacteriophage 933W, L0136 YPK_1397 IPR036700 YPK_1397 YPK_1398 IPR010938 Protein of unknown function DUF1131 YPK_1398 IPR038714 YPK_1398 YPK_1399 IPR006314 Dyp-type peroxidase YPK_1399 IPR011008 Dimeric alpha-beta barrel YPK_1400 IPR002220 DapA-like YPK_1400 IPR013785 Aldolase-type TIM barrel YPK_1400 IPR020624 Dihydrodipicolinate synthetase, conserved site YPK_1401 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase YPK_1401 IPR011060 Ribulose-phosphate binding barrel YPK_1401 IPR013785 Aldolase-type TIM barrel YPK_1403 IPR032674 YPK_1403 YPK_1403 IPR032675 YPK_1403 YPK_1404 IPR000600 ROK YPK_1404 IPR023945 N-acetylmannosamine kinase, bacterial YPK_1405 IPR004375 Conserved hypothetical protein CHP00022 YPK_1405 IPR037012 YPK_1405 YPK_1406 IPR000281 Helix-turn-helix protein RpiR YPK_1406 IPR001347 Sugar isomerase (SIS) YPK_1406 IPR009057 Homeodomain-like YPK_1406 IPR036388 YPK_1406 YPK_1407 IPR004742 Sialic acid transporter YPK_1407 IPR011701 Major facilitator superfamily YPK_1407 IPR036259 YPK_1407 YPK_1408 IPR005669 Thiosulphate/Sulfate-binding protein YPK_1409 IPR000515 MetI-like domain YPK_1409 IPR005667 Sulphate ABC transporter permease protein 2 YPK_1409 IPR011865 Sulphate ABC transporter, permease protein CysT YPK_1409 IPR035906 YPK_1409 YPK_1410 IPR000515 MetI-like domain YPK_1410 IPR005667 Sulphate ABC transporter permease protein 2 YPK_1410 IPR011866 Sulphate ABC transporter, permease protein CysW YPK_1410 IPR035906 YPK_1410 YPK_1411 IPR003439 ABC transporter-like YPK_1411 IPR003593 AAA+ ATPase domain YPK_1411 IPR005666 Sulphate transport system permease protein 1 YPK_1411 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1411 IPR017871 ABC transporter, conserved site YPK_1411 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1412 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPK_1412 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_1412 IPR005856 Cysteine synthase K/M YPK_1412 IPR005858 Cysteine synthase B YPK_1412 IPR036052 YPK_1412 YPK_1413 IPR032675 YPK_1413 YPK_1414 IPR001789 Signal transduction response regulator, receiver domain YPK_1414 IPR001867 Signal transduction response regulator, C-terminal YPK_1414 IPR011006 CheY-like superfamily YPK_1414 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1414 IPR036388 YPK_1414 YPK_1415 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_1415 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_1415 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_1415 IPR036097 YPK_1415 YPK_1415 IPR036890 YPK_1415 YPK_1416 IPR002035 von Willebrand factor, type A YPK_1416 IPR036465 YPK_1416 YPK_1417 IPR004839 Aminotransferase, class I/classII YPK_1417 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1417 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1417 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1417 IPR027619 Putative C-S lyase YPK_1418 IPR000587 Creatinase, N-terminal YPK_1418 IPR000994 Peptidase M24, structural domain YPK_1418 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_1418 IPR036005 YPK_1418 YPK_1419 IPR021741 Protein of unknown function DUF3311 YPK_1420 IPR038377 YPK_1420 YPK_1421 IPR001763 Rhodanese-like domain YPK_1421 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_1421 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPK_1421 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_1421 IPR036188 YPK_1421 YPK_1421 IPR036873 YPK_1421 YPK_1422 IPR003439 ABC transporter-like YPK_1422 IPR003593 AAA+ ATPase domain YPK_1422 IPR003838 Permease FtsX-like YPK_1422 IPR017871 ABC transporter, conserved site YPK_1422 IPR025857 MacB-like periplasmic core domain YPK_1422 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1423 IPR006143 RND efflux pump, membrane fusion protein YPK_1423 IPR032317 YPK_1423 YPK_1424 IPR001789 Signal transduction response regulator, receiver domain YPK_1424 IPR001867 Signal transduction response regulator, C-terminal YPK_1424 IPR011006 CheY-like superfamily YPK_1424 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1424 IPR036388 YPK_1424 YPK_1425 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_1425 IPR003660 HAMP linker domain YPK_1425 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_1425 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_1425 IPR036097 YPK_1425 YPK_1425 IPR036890 YPK_1425 YPK_1426 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPK_1426 IPR011055 Duplicated hybrid motif YPK_1427 IPR000121 PEP-utilising enzyme, C-terminal YPK_1427 IPR006318 Phosphoenolpyruvate-utilising enzyme YPK_1427 IPR008279 PEP-utilising enzyme, mobile domain YPK_1427 IPR008731 Phosphotransferase system, enzyme I N-terminal YPK_1427 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_1427 IPR018274 PEP-utilising enzyme, active site YPK_1427 IPR023151 PEP-utilising enzyme, conserved site YPK_1427 IPR024692 Phosphotransferase system, enzyme I YPK_1427 IPR036618 YPK_1427 YPK_1427 IPR036637 YPK_1427 YPK_1428 IPR000032 Phosphocarrier HPr protein-like YPK_1428 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPK_1428 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPK_1428 IPR035895 YPK_1428 YPK_1429 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site YPK_1429 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_1429 IPR005856 Cysteine synthase K/M YPK_1429 IPR005859 Cysteine synthase A YPK_1429 IPR036052 YPK_1429 YPK_1430 IPR022985 CysZ, gammaproteobacteria YPK_1431 IPR007449 ZipA, C-terminal FtsZ-binding domain YPK_1431 IPR011919 Cell division protein ZipA YPK_1431 IPR036765 YPK_1431 YPK_1432 IPR001357 BRCT domain YPK_1432 IPR001679 NAD-dependent DNA ligase YPK_1432 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPK_1432 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type YPK_1432 IPR004150 NAD-dependent DNA ligase, OB-fold YPK_1432 IPR010994 RuvA domain 2-like YPK_1432 IPR012340 Nucleic acid-binding, OB-fold YPK_1432 IPR013839 NAD-dependent DNA ligase, adenylation YPK_1432 IPR013840 NAD-dependent DNA ligase, N-terminal YPK_1432 IPR018239 NAD-dependent DNA ligase, active site YPK_1432 IPR033136 YPK_1432 YPK_1432 IPR036420 YPK_1432 YPK_1433 IPR024530 Protein of unknown function DUF3820 YPK_1434 IPR025577 FlxA-like protein YPK_1435 IPR009267 Protein of unknown function DUF925 YPK_1437 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPK_1437 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_1437 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YPK_1437 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YPK_1437 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1437 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPK_1437 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YPK_1438 IPR002668 Concentrative nucleoside transporter N-terminal domain YPK_1438 IPR011642 Nucleoside recognition Gate YPK_1438 IPR011657 Concentrative nucleoside transporter C-terminal domain YPK_1439 IPR001046 NRAMP family YPK_1440 IPR019638 Protein of unknown function DUF2502 YPK_1441 IPR023210 NADP-dependent oxidoreductase domain YPK_1441 IPR036812 YPK_1441 YPK_1442 IPR000847 Transcription regulator HTH, LysR YPK_1442 IPR005119 LysR, substrate-binding YPK_1442 IPR036388 YPK_1442 YPK_1442 IPR036390 YPK_1442 YPK_1443 IPR007896 Transmembrane pair, bacterial YPK_1444 IPR003836 Glucokinase YPK_1445 IPR010856 Protein of unknown function DUF1479 YPK_1445 IPR027443 Isopenicillin N synthase-like YPK_1446 IPR004839 Aminotransferase, class I/classII YPK_1446 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1446 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1446 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1447 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPK_1447 IPR016174 Di-haem cytochrome, transmembrane YPK_1448 IPR031807 YPK_1448 YPK_1448 IPR035069 YPK_1448 YPK_1449 IPR005534 Curli production assembly/transport component CsgG YPK_1450 IPR014508 Uncharacterised conserved protein, TPR-like repeat YPK_1451 IPR008517 Protein of unknown function DUF799 YPK_1452 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1452 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1453 IPR020945 DMSO/Nitrate reductase chaperone YPK_1453 IPR026269 Tat proofreading chaperone DmsD-type YPK_1453 IPR036411 YPK_1453 YPK_1454 IPR007059 DMSO reductase anchor subunit (DmsC) YPK_1455 IPR014297 Dimethylsulphoxide reductase, chain B YPK_1455 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1455 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1456 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPK_1456 IPR006656 Molybdopterin oxidoreductase YPK_1456 IPR006657 Molydopterin dinucleotide-binding domain YPK_1456 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPK_1456 IPR009010 Aspartate decarboxylase-like domain YPK_1456 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPK_1456 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_1456 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPK_1457 IPR025320 Protein of unknown function DUF4225 YPK_1459 IPR008514 Type VI secretion system effector, Hcp YPK_1459 IPR036624 YPK_1459 YPK_1460 IPR014591 Uncharacterised conserved protein UCP034455 YPK_1460 IPR021125 Protein of unknown function DUF2127 YPK_1461 IPR003439 ABC transporter-like YPK_1461 IPR003593 AAA+ ATPase domain YPK_1461 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1461 IPR017871 ABC transporter, conserved site YPK_1461 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1462 IPR000515 MetI-like domain YPK_1462 IPR035906 YPK_1462 YPK_1463 IPR006061 Bacterial extracellular solute-binding family 1, conserved site YPK_1463 IPR026045 Ferric binding protein YPK_1464 IPR011757 Lytic transglycosylase MltB YPK_1464 IPR023346 Lysozyme-like domain YPK_1464 IPR031304 YPK_1464 YPK_1465 IPR000792 Transcription regulator LuxR, C-terminal YPK_1465 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1465 IPR036388 YPK_1465 YPK_1466 IPR014894 Protein DcrB YPK_1466 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPK_1467 IPR006664 Outer membrane protein, bacterial YPK_1467 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_1467 IPR036737 YPK_1467 YPK_1469 IPR021067 Glycosyltransferase, GlcNAc YPK_1469 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1470 IPR000259 Fimbrial-type adhesion domain YPK_1470 IPR008966 Adhesion domain YPK_1470 IPR036937 YPK_1470 YPK_1471 IPR010657 ImpA, N-terminal YPK_1472 IPR010732 Protein of unknown function DUF1305 YPK_1473 IPR010272 Type VI secretion system, VCA0110 YPK_1474 IPR001270 ClpA/B family YPK_1474 IPR003593 AAA+ ATPase domain YPK_1474 IPR003959 ATPase, AAA-type, core YPK_1474 IPR004176 Clp, N-terminal YPK_1474 IPR017729 Type VI secretion system, ATPase ClpV1 YPK_1474 IPR018368 ClpA/B, conserved site 1 YPK_1474 IPR019489 Clp ATPase, C-terminal YPK_1474 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1474 IPR028299 ClpA/B, conserved site 2 YPK_1474 IPR036628 YPK_1474 YPK_1475 IPR008966 Adhesion domain YPK_1475 IPR036937 YPK_1475 YPK_1475 IPR039458 YPK_1475 YPK_1476 IPR001829 Pili assembly chaperone, bacterial YPK_1476 IPR008962 PapD-like YPK_1476 IPR013783 Immunoglobulin-like fold YPK_1476 IPR016147 PapD, N-terminal, bacterial YPK_1476 IPR016148 Pili assembly chaperone, C-terminal domain YPK_1476 IPR018046 Pili assembly chaperone, conserved site YPK_1476 IPR036316 YPK_1476 YPK_1477 IPR000015 Outer membrane usher protein YPK_1477 IPR025885 PapC, N-terminal domain YPK_1477 IPR037224 YPK_1477 YPK_1478 IPR000259 Fimbrial-type adhesion domain YPK_1478 IPR008966 Adhesion domain YPK_1478 IPR036937 YPK_1478 YPK_1479 IPR008312 Uncharacterised conserved protein UCP028301 YPK_1480 IPR010269 Protein of unknown function DUF877 YPK_1481 IPR008514 Type VI secretion system effector, Hcp YPK_1481 IPR036624 YPK_1481 YPK_1482 IPR017734 Type VI secretion system, lipoprotein SciN YPK_1482 IPR038706 YPK_1482 YPK_1483 IPR010263 Protein of unknown function DUF876 YPK_1484 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_1484 IPR017732 Type IV / VI secretion system, DotU YPK_1484 IPR017733 Type VI secretion system, OmpA/MotB domain YPK_1484 IPR036737 YPK_1484 YPK_1484 IPR038522 YPK_1484 YPK_1485 IPR009612 ImcF-related YPK_1485 IPR010623 Domain of unknown function DUF1215 YPK_1485 IPR017731 Type VI secretion system, IcmF YPK_1485 IPR025743 ImcF-related, N-terminal domain YPK_1485 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1486 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_1486 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_1486 IPR037026 YPK_1486 YPK_1487 IPR008727 PAAR motif YPK_1489 IPR009211 Predicted virulence protein, SciE type YPK_1489 IPR011990 Tetratricopeptide-like helical domain YPK_1490 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_1492 IPR004624 PhnA protein YPK_1492 IPR013987 PhnA protein, N-terminal YPK_1492 IPR013988 PhnA protein, C-terminal YPK_1493 IPR018702 Protein of unknown function DUF2207, membrane YPK_1494 IPR007156 LemA YPK_1494 IPR023353 LemA-like domain YPK_1496 IPR003439 ABC transporter-like YPK_1496 IPR003593 AAA+ ATPase domain YPK_1496 IPR005895 ABC transporter, haem export, CcmA YPK_1496 IPR017871 ABC transporter, conserved site YPK_1496 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1497 IPR003544 Cytochrome c-type biogenesis protein CcmB YPK_1497 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YPK_1498 IPR002541 Cytochrome c assembly protein YPK_1498 IPR003557 Cytochrome c-type biogenesis protein CcmC YPK_1499 IPR007078 Haem exporter protein D (CcmD) YPK_1500 IPR004329 CcmE/CycJ protein YPK_1500 IPR036127 YPK_1500 YPK_1501 IPR002541 Cytochrome c assembly protein YPK_1501 IPR003567 Cytochrome c-type biogenesis protein YPK_1501 IPR003568 Cytochrome c-type biogenesis protein CcmF YPK_1501 IPR032523 YPK_1501 YPK_1502 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE YPK_1502 IPR013740 Redoxin YPK_1502 IPR017937 Thioredoxin, conserved site YPK_1502 IPR036249 YPK_1502 YPK_1503 IPR005616 Cytochrome C biogenesis protein CcmH YPK_1503 IPR038297 YPK_1503 YPK_1504 IPR011990 Tetratricopeptide-like helical domain YPK_1504 IPR017560 Cytochrome c-type biogenesis protein CcmI YPK_1505 IPR007428 VacJ-like lipoprotein YPK_1506 IPR005017 Membrane protein, aromatic hydrocarbon degradation YPK_1507 IPR005272 Conserved hypothetical protein CHP00743 YPK_1507 IPR035571 YPK_1507 YPK_1508 IPR002155 Thiolase YPK_1508 IPR012806 Acetyl-CoA C-acyltransferase FadI YPK_1508 IPR016039 Thiolase-like YPK_1508 IPR020610 Thiolase, active site YPK_1508 IPR020613 Thiolase, conserved site YPK_1508 IPR020615 Thiolase, acyl-enzyme intermediate active site YPK_1508 IPR020616 Thiolase, N-terminal YPK_1508 IPR020617 Thiolase, C-terminal YPK_1509 IPR001753 Crotonase superfamily YPK_1509 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPK_1509 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPK_1509 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPK_1509 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_1509 IPR012802 Fatty oxidation complex, alpha subunit FadJ YPK_1509 IPR029045 ClpP/crotonase-like domain YPK_1509 IPR036291 YPK_1509 YPK_1511 IPR004449 Phosphohistidine phosphatase SixA, subgroup YPK_1511 IPR013078 Histidine phosphatase superfamily, clade-1 YPK_1511 IPR029033 Histidine phosphatase superfamily YPK_1512 IPR002625 Smr protein/MutS2 C-terminal YPK_1512 IPR022990 Uncharacterised protein family UPF0115 YPK_1512 IPR036063 YPK_1512 YPK_1513 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_1513 IPR004556 Modification methylase HemK YPK_1513 IPR007848 Methyltransferase small domain YPK_1513 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase YPK_1513 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1514 IPR000453 Chorismate synthase YPK_1514 IPR020541 Chorismate synthase, conserved site YPK_1514 IPR035904 YPK_1514 YPK_1515 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase YPK_1515 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPK_1516 IPR002781 Transmembrane protein TauE like YPK_1517 IPR007411 Protein of unknown function DUF462 YPK_1518 IPR014987 Uncharacterised protein family YfcL YPK_1519 IPR006076 FAD dependent oxidoreductase YPK_1519 IPR008471 MnmC-like methyltransferase YPK_1519 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal YPK_1519 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC YPK_1519 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1519 IPR036188 YPK_1519 YPK_1520 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_1520 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_1520 IPR016039 Thiolase-like YPK_1520 IPR018201 Beta-ketoacyl synthase, active site YPK_1520 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_1521 IPR001920 Asp/Glu racemase YPK_1521 IPR004380 Aspartate racemase YPK_1521 IPR015942 Asp/Glu/hydantoin racemase YPK_1521 IPR018187 Asp/Glu racemase, active site YPK_1522 IPR000259 Fimbrial-type adhesion domain YPK_1522 IPR008966 Adhesion domain YPK_1522 IPR036937 YPK_1522 YPK_1523 IPR023597 Flagellar regulator Flk YPK_1524 IPR000620 Drug/metabolite transporter YPK_1526 IPR003313 AraC-type arabinose-binding/dimerisation domain YPK_1526 IPR009057 Homeodomain-like YPK_1526 IPR011051 RmlC-like cupin domain YPK_1526 IPR014710 RmlC-like jelly roll fold YPK_1526 IPR018060 DNA binding HTH domain, AraC-type YPK_1526 IPR018062 HTH domain AraC-type, conserved site YPK_1526 IPR020449 Transcription regulator HTH, AraC- type YPK_1527 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_1527 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPK_1527 IPR020921 Erythronate-4-phosphate dehydrogenase YPK_1527 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain YPK_1527 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPK_1527 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_1527 IPR036291 YPK_1527 YPK_1527 IPR038251 YPK_1527 YPK_1528 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPK_1528 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPK_1528 IPR036291 YPK_1528 YPK_1529 IPR001406 Pseudouridine synthase I, TruA YPK_1529 IPR020095 Pseudouridine synthase I, TruA, C-terminal YPK_1529 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain YPK_1529 IPR020103 Pseudouridine synthase, catalytic domain YPK_1530 IPR032816 YPK_1530 YPK_1531 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit YPK_1531 IPR029045 ClpP/crotonase-like domain YPK_1531 IPR034733 YPK_1531 YPK_1532 IPR001645 Folylpolyglutamate synthetase YPK_1532 IPR004101 Mur ligase, C-terminal YPK_1532 IPR013221 Mur ligase, central YPK_1532 IPR018109 Folylpolyglutamate synthetase, conserved site YPK_1532 IPR036565 YPK_1532 YPK_1532 IPR036615 YPK_1532 YPK_1533 IPR007730 Sporulation-related domain YPK_1533 IPR032898 YPK_1533 YPK_1533 IPR036680 YPK_1533 YPK_1534 IPR003825 Colicin V production, CvpA YPK_1535 IPR000836 Phosphoribosyltransferase domain YPK_1535 IPR005854 Amidophosphoribosyl transferase YPK_1535 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_1535 IPR029057 Phosphoribosyltransferase-like YPK_1536 IPR003382 Flavoprotein YPK_1536 IPR004507 Decarboxylase UbiX/Pad1 YPK_1536 IPR036551 YPK_1536 YPK_1538 IPR001638 Extracellular solute-binding protein, family 3 YPK_1538 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein YPK_1538 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPK_1539 IPR000515 MetI-like domain YPK_1539 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_1539 IPR035906 YPK_1539 YPK_1540 IPR000515 MetI-like domain YPK_1540 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_1540 IPR035906 YPK_1540 YPK_1541 IPR003439 ABC transporter-like YPK_1541 IPR003593 AAA+ ATPase domain YPK_1541 IPR017871 ABC transporter, conserved site YPK_1541 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1541 IPR030679 YPK_1541 YPK_1542 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_1542 IPR010099 Sugar nucleotide epimerase YfcH,-like putative YPK_1542 IPR013549 Domain of unknown function DUF1731 YPK_1542 IPR036291 YPK_1542 YPK_1543 IPR001633 EAL domain YPK_1543 IPR035919 YPK_1543 YPK_1544 IPR000979 Phosphodiesterase MJ0936/Vps29 YPK_1544 IPR020935 Phosphodiesterase YfcE, conserved site YPK_1544 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type YPK_1544 IPR029052 Metallo-dependent phosphatase-like YPK_1545 IPR000086 NUDIX hydrolase domain YPK_1545 IPR015797 NUDIX hydrolase domain-like YPK_1545 IPR024195 NUDIX hydrolase, YfcD, predicted YPK_1546 IPR004703 Phosphotransferase system, sugar-specific permease component YPK_1547 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPK_1547 IPR036095 YPK_1547 YPK_1548 IPR002178 PTS EIIA type-2 domain YPK_1548 IPR016152 Phosphotransferase/anion transporter YPK_1549 IPR000843 Transcription regulator HTH, LacI YPK_1549 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1549 IPR028082 Periplasmic binding protein-like I YPK_1550 IPR002505 Phosphate acetyl/butaryl transferase YPK_1550 IPR004614 Phosphate acetyltransferase YPK_1550 IPR010766 DRTGG YPK_1550 IPR016475 Phosphate acetyltransferase, bacteria YPK_1550 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1550 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain like YPK_1551 IPR000890 Aliphatic acid kinase, short-chain YPK_1551 IPR004372 Acetate/Proprionate kinase YPK_1551 IPR023865 Aliphatic acid kinase, short-chain, conserved site YPK_1552 IPR007334 Uncharacterised protein family UPF0208 YPK_1553 IPR005587 Uncharacterised protein family UPF0304, YfbU YPK_1553 IPR023145 YfbU, helix-hairpin domain YPK_1553 IPR023146 YfbU, alpha-helical bundle domain YPK_1554 IPR006439 HAD hydrolase, subfamily IA YPK_1554 IPR023198 Phosphoglycolate phosphatase, domain 2 YPK_1554 IPR023214 HAD-like domain YPK_1554 IPR036412 YPK_1554 YPK_1555 IPR004680 Citrate transporter-like domain YPK_1555 IPR006037 Regulator of K+ conductance, C-terminal YPK_1555 IPR031312 YPK_1555 YPK_1555 IPR036721 YPK_1555 YPK_1557 IPR003607 HD/PDEase domain YPK_1557 IPR006674 HD domain YPK_1557 IPR022971 5'-deoxynucleotidase YfbR YPK_1558 IPR004839 Aminotransferase, class I/classII YPK_1558 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1558 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1558 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1559 IPR000847 Transcription regulator HTH, LysR YPK_1559 IPR005119 LysR, substrate-binding YPK_1559 IPR036388 YPK_1559 YPK_1559 IPR036390 YPK_1559 YPK_1560 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YPK_1560 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid YPK_1560 IPR038430 YPK_1560 YPK_1561 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit YPK_1561 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit YPK_1562 IPR001135 NADH-quinone oxidoreductase, subunit D YPK_1562 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YPK_1562 IPR010218 NADH dehydrogenase, subunit C YPK_1562 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site YPK_1562 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H YPK_1562 IPR023062 NADH dehydrogenase, subunit CD YPK_1562 IPR029014 NiFe hydrogenase-like YPK_1562 IPR037232 YPK_1562 YPK_1562 IPR038290 YPK_1562 YPK_1563 IPR002023 NADH-quinone oxidoreductase subunit E-like YPK_1563 IPR036249 YPK_1563 YPK_1564 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site YPK_1564 IPR011537 NADH ubiquinone oxidoreductase, F subunit YPK_1564 IPR011538 NADH:ubiquinone oxidoreductase, 51kDa subunit YPK_1564 IPR019575 NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YPK_1564 IPR037207 YPK_1564 YPK_1564 IPR037225 YPK_1564 YPK_1565 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site YPK_1565 IPR006656 Molybdopterin oxidoreductase YPK_1565 IPR006657 Molydopterin dinucleotide-binding domain YPK_1565 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPK_1565 IPR009010 Aspartate decarboxylase-like domain YPK_1565 IPR010228 NADH:ubiquinone oxidoreductase, subunit G YPK_1565 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YPK_1565 IPR036010 YPK_1565 YPK_1566 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YPK_1566 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site YPK_1567 IPR010226 NADH-quinone oxidoreductase, chain I YPK_1567 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1567 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1568 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YPK_1569 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K YPK_1569 IPR039428 YPK_1569 YPK_1570 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YPK_1570 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YPK_1570 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 YPK_1570 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup YPK_1571 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YPK_1571 IPR003918 NADH:ubiquinone oxidoreductase YPK_1571 IPR010227 NADH-quinone oxidoreductase, chain M/4 YPK_1572 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YPK_1572 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 YPK_1574 IPR004375 Conserved hypothetical protein CHP00022 YPK_1574 IPR037012 YPK_1574 YPK_1575 IPR006001 Carbohydrate kinase, thermoresistant glucokinase YPK_1575 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1575 IPR031322 YPK_1575 YPK_1576 IPR002347 Glucose/ribitol dehydrogenase YPK_1576 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_1576 IPR036291 YPK_1576 YPK_1577 IPR003790 Protein of unknown function DUF187 YPK_1577 IPR013785 Aldolase-type TIM barrel YPK_1577 IPR017853 Glycoside hydrolase, superfamily YPK_1578 IPR000843 Transcription regulator HTH, LacI YPK_1578 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_1578 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1578 IPR028082 Periplasmic binding protein-like I YPK_1579 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_1579 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPK_1579 IPR036291 YPK_1579 YPK_1580 IPR011701 Major facilitator superfamily YPK_1580 IPR036259 YPK_1580 YPK_1581 IPR005624 Domain of unknown function DUF336 YPK_1581 IPR010371 Uncharacterised protein family UPF0303 YPK_1581 IPR038084 YPK_1581 YPK_1582 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPK_1582 IPR004786 6-phosphogluconate dehydratase YPK_1582 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPK_1582 IPR037237 YPK_1582 YPK_1585 IPR010279 Protein of unknown function DUF883, ElaB YPK_1587 IPR001646 Pentapeptide repeat YPK_1588 IPR004561 Isochorismate synthase YPK_1588 IPR005801 ADC synthase YPK_1588 IPR015890 Chorismate binding, C-terminal YPK_1588 IPR034681 YPK_1588 YPK_1589 IPR004433 Menaquinone biosynthesis protein MenD YPK_1589 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPK_1589 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPK_1589 IPR029061 Thiamin diphosphate-binding fold YPK_1589 IPR032264 YPK_1589 YPK_1590 IPR000073 Alpha/beta hydrolase fold-1 YPK_1590 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YPK_1590 IPR029058 Alpha/Beta hydrolase fold YPK_1591 IPR001753 Crotonase superfamily YPK_1591 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase YPK_1591 IPR014748 Crontonase, C-terminal YPK_1591 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPK_1591 IPR029045 ClpP/crotonase-like domain YPK_1592 IPR010196 O-succinylbenzoic acid (OSB) synthetase YPK_1592 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPK_1592 IPR029017 Enolase N-terminal domain-like YPK_1592 IPR029065 Enolase C-terminal domain-like YPK_1592 IPR036849 YPK_1592 YPK_1593 IPR000873 AMP-dependent synthetase/ligase YPK_1593 IPR010192 2-succinylbenzoate--CoA ligase YPK_1593 IPR020845 AMP-binding, conserved site YPK_1594 IPR000312 Glycosyl transferase, family 3 YPK_1594 IPR017459 Glycosyl transferase family 3, N-terminal domain YPK_1594 IPR035902 YPK_1594 YPK_1594 IPR036320 YPK_1594 YPK_1595 IPR010854 Domain of unknown function DUF1471 YPK_1595 IPR025543 Dodecin-like YPK_1595 IPR036275 YPK_1595 YPK_1596 IPR010286 Ribosomal RNA large subunit methyltransferase F-like YPK_1596 IPR016909 Ribosomal RNA large subunit methyltransferase F YPK_1596 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1597 IPR000014 PAS domain YPK_1597 IPR001610 PAC motif YPK_1597 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1597 IPR004090 Chemotaxis methyl-accepting receptor YPK_1597 IPR013656 PAS fold-4 YPK_1597 IPR035965 YPK_1597 YPK_1598 IPR003439 ABC transporter-like YPK_1598 IPR003593 AAA+ ATPase domain YPK_1598 IPR017871 ABC transporter, conserved site YPK_1598 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1598 IPR030679 YPK_1598 YPK_1599 IPR000515 MetI-like domain YPK_1599 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_1599 IPR035906 YPK_1599 YPK_1600 IPR001320 Ionotropic glutamate receptor YPK_1600 IPR001638 Extracellular solute-binding protein, family 3 YPK_1600 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPK_1601 IPR003848 Domain of unknown function DUF218 YPK_1601 IPR011990 Tetratricopeptide-like helical domain YPK_1602 IPR002177 DNA-binding protein Dps YPK_1602 IPR008331 Ferritin/DPS protein domain YPK_1602 IPR009078 Ferritin-like superfamily YPK_1602 IPR012347 Ferritin-related YPK_1602 IPR023067 DNA protection during starvation protein, gammaproteobacteria YPK_1602 IPR023188 DNA-binding protein Dps, conserved site YPK_1603 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal YPK_1603 IPR023506 Trans-aconitate 2-methyltransferase YPK_1603 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1604 IPR000182 GNAT domain YPK_1604 IPR016181 Acyl-CoA N-acyltransferase YPK_1605 IPR000620 Drug/metabolite transporter YPK_1606 IPR000758 Virulence-related outer membrane protein YPK_1606 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_1606 IPR027385 Outer membrane protein beta-barrel YPK_1607 IPR002524 Cation efflux protein YPK_1607 IPR027469 Cation efflux protein transmembrane domain YPK_1608 IPR031829 YPK_1608 YPK_1608 IPR038334 YPK_1608 YPK_1609 IPR031829 YPK_1609 YPK_1609 IPR038334 YPK_1609 YPK_1610 IPR011032 GroES (chaperonin 10)-like YPK_1610 IPR013149 Alcohol dehydrogenase, C-terminal YPK_1610 IPR013154 Alcohol dehydrogenase GroES-like YPK_1610 IPR020843 Polyketide synthase, enoylreductase YPK_1610 IPR036291 YPK_1610 YPK_1611 IPR025997 Periplasmic binding protein domain YPK_1611 IPR028082 Periplasmic binding protein-like I YPK_1612 IPR003439 ABC transporter-like YPK_1612 IPR003593 AAA+ ATPase domain YPK_1612 IPR017871 ABC transporter, conserved site YPK_1612 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1613 IPR001851 ABC transporter, permease YPK_1614 IPR000843 Transcription regulator HTH, LacI YPK_1614 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1614 IPR025997 Periplasmic binding protein domain YPK_1614 IPR028082 Periplasmic binding protein-like I YPK_1615 IPR000847 Transcription regulator HTH, LysR YPK_1615 IPR005119 LysR, substrate-binding YPK_1615 IPR036388 YPK_1615 YPK_1615 IPR036390 YPK_1615 YPK_1616 IPR011829 Tartrate dehydrogenase YPK_1616 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPK_1616 IPR024084 Isopropylmalate dehydrogenase-like domain YPK_1618 IPR000060 BCCT transporter family YPK_1618 IPR018093 BCCT transporter, conserved site YPK_1619 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit YPK_1619 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain YPK_1619 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site YPK_1619 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YPK_1619 IPR036922 YPK_1619 YPK_1619 IPR039004 YPK_1619 YPK_1620 IPR000951 Phthalate dioxygenase reductase YPK_1620 IPR001041 2Fe-2S ferredoxin-type domain YPK_1620 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPK_1620 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPK_1620 IPR008333 Oxidoreductase, FAD-binding domain YPK_1620 IPR012675 Beta-grasp domain YPK_1620 IPR017938 Riboflavin synthase-like beta-barrel YPK_1620 IPR036010 YPK_1620 YPK_1620 IPR039003 YPK_1620 YPK_1620 IPR039261 YPK_1620 YPK_1621 IPR005565 Haemolysin activator HlyB YPK_1621 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_1621 IPR027282 Two partner secretion pathway transporter YPK_1621 IPR035251 YPK_1621 YPK_1622 IPR006914 VENN motif-containing domain YPK_1622 IPR008619 Filamentous haemagglutinin repeat YPK_1622 IPR008638 Filamentous haemagglutinin, N-terminal YPK_1622 IPR011050 Pectin lyase fold/virulence factor YPK_1622 IPR012334 Pectin lyase fold YPK_1622 IPR024973 ESPR domain YPK_1622 IPR025157 Haemagluttinin repeat YPK_1624 IPR002514 Transposase IS3/IS911family YPK_1624 IPR009057 Homeodomain-like YPK_1625 IPR006914 VENN motif-containing domain YPK_1628 IPR001387 Cro/C1-type helix-turn-helix domain YPK_1628 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1631 IPR003439 ABC transporter-like YPK_1631 IPR003593 AAA+ ATPase domain YPK_1631 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1631 IPR013611 Transport-associated OB, type 2 YPK_1631 IPR017871 ABC transporter, conserved site YPK_1631 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1632 IPR005841 Alpha-D-phosphohexomutase superfamily YPK_1632 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPK_1632 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPK_1632 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPK_1632 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPK_1632 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPK_1632 IPR016066 Alpha-D-phosphohexomutase, conserved site YPK_1632 IPR036900 YPK_1632 YPK_1633 IPR000843 Transcription regulator HTH, LacI YPK_1633 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1633 IPR028082 Periplasmic binding protein-like I YPK_1634 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_1635 IPR000515 MetI-like domain YPK_1635 IPR035906 YPK_1635 YPK_1636 IPR000515 MetI-like domain YPK_1636 IPR035906 YPK_1636 YPK_1637 IPR007184 Mannoside phosphorylase YPK_1637 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain YPK_1638 IPR015045 Protein of unknown function DUF1861 YPK_1638 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain YPK_1639 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_1641 IPR006685 Mechanosensitive ion channel MscS YPK_1641 IPR010920 Like-Sm (LSM) domain YPK_1641 IPR023408 YPK_1641 YPK_1644 IPR002729 CRISPR-associated protein Cas1 YPK_1644 IPR019857 CRISPR-associated protein Cas1, YPEST subtype YPK_1645 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YPK_1645 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1645 IPR038257 YPK_1645 YPK_1646 IPR013397 CRISPR-associated protein Csy1 YPK_1647 IPR013398 CRISPR-associated protein Csy2 YPK_1648 IPR013399 CRISPR-associated protein Csy3 YPK_1649 IPR013396 CRISPR-associated protein Csy4 YPK_1650 IPR023210 NADP-dependent oxidoreductase domain YPK_1650 IPR036812 YPK_1650 YPK_1651 IPR014826 Formaldehyde-activating enzyme YPK_1651 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_1651 IPR037075 YPK_1651 YPK_1652 IPR005828 General substrate transporter YPK_1652 IPR005829 Sugar transporter, conserved site YPK_1652 IPR036259 YPK_1652 YPK_1654 IPR000847 Transcription regulator HTH, LysR YPK_1654 IPR005119 LysR, substrate-binding YPK_1654 IPR036388 YPK_1654 YPK_1654 IPR036390 YPK_1654 YPK_1655 IPR000792 Transcription regulator LuxR, C-terminal YPK_1655 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPK_1655 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1655 IPR036388 YPK_1655 YPK_1655 IPR036693 YPK_1655 YPK_1656 IPR001690 Autoinducer synthesis protein YPK_1656 IPR016181 Acyl-CoA N-acyltransferase YPK_1656 IPR018311 Autoinducer synthesis, conserved site YPK_1657 IPR000620 Drug/metabolite transporter YPK_1658 IPR005170 Transporter-associated domain YPK_1658 IPR006037 Regulator of K+ conductance, C-terminal YPK_1658 IPR006153 Cation/H+ exchanger YPK_1658 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_1658 IPR023729 K(+)/H(+) antiporter NhaP2 YPK_1658 IPR036318 YPK_1658 YPK_1658 IPR036721 YPK_1658 YPK_1658 IPR038770 YPK_1658 YPK_1660 IPR002656 Acyltransferase 3 YPK_1661 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal YPK_1661 IPR011013 Galactose mutarotase-like domain YPK_1661 IPR013783 Immunoglobulin-like fold YPK_1661 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D YPK_1661 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPK_1661 IPR014756 Immunoglobulin E-set YPK_1661 IPR023704 Glucan biosynthesis protein G YPK_1662 IPR001173 Glycosyltransferase 2-like YPK_1662 IPR023725 Glucan biosynthesis glucosyltransferase H YPK_1662 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1663 IPR010780 Protein of unknown function DUF1375 YPK_1664 IPR000109 Proton-dependent oligopeptide transporter family YPK_1664 IPR005279 Amino acid/peptide transporter family YPK_1664 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site YPK_1664 IPR036259 YPK_1664 YPK_1665 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPK_1665 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPK_1668 IPR001763 Rhodanese-like domain YPK_1668 IPR020936 Uncharacterised protein family UPF0176 YPK_1668 IPR022111 Protein of unknown function DUF3650 YPK_1668 IPR036873 YPK_1668 YPK_1669 IPR002549 Uncharacterised protein family UPF0118 YPK_1670 IPR024494 Protein of unknown function DUF2770 YPK_1671 IPR000792 Transcription regulator LuxR, C-terminal YPK_1671 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1671 IPR036388 YPK_1671 YPK_1672 IPR006076 FAD dependent oxidoreductase YPK_1672 IPR023493 N-methyl-L-tryptophan oxidase MTOX YPK_1672 IPR036188 YPK_1672 YPK_1673 IPR025730 Biofilm regulator BssS YPK_1674 IPR010391 DNA damage-inducible protein DinI-like YPK_1674 IPR036687 YPK_1674 YPK_1675 IPR002195 Dihydroorotase, conserved site YPK_1675 IPR004721 Dihydroorotase homodimeric type YPK_1675 IPR006680 Amidohydrolase 1 YPK_1675 IPR032466 YPK_1675 YPK_1676 IPR007138 Antibiotic biosynthesis monooxygenase-like domain YPK_1676 IPR011008 Dimeric alpha-beta barrel YPK_1677 IPR003029 Ribosomal protein S1, RNA-binding domain YPK_1677 IPR004659 Ribonuclease E/G YPK_1677 IPR012340 Nucleic acid-binding, OB-fold YPK_1677 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YPK_1677 IPR021968 Polyribonucleotide phosphorylase C-terminal YPK_1677 IPR022967 RNA-binding domain, S1 YPK_1677 IPR028878 Ribonuclease E YPK_1678 IPR002942 RNA-binding S4 domain YPK_1678 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPK_1678 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPK_1678 IPR006225 Pseudouridine synthase, RluC/RluD YPK_1678 IPR020103 Pseudouridine synthase, catalytic domain YPK_1678 IPR036986 YPK_1678 YPK_1679 IPR002686 Transposase IS200-like YPK_1679 IPR036515 YPK_1679 YPK_1680 IPR003697 Maf-like protein YPK_1680 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_1681 IPR003772 Protein of unknown function DUF177 YPK_1682 IPR002677 Ribosomal protein L32p YPK_1682 IPR011332 Zinc-binding ribosomal protein YPK_1683 IPR003664 Fatty acid synthesis PlsX protein YPK_1683 IPR012281 Phospholipid biosynthesis protein, PlsX-like YPK_1684 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YPK_1684 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal YPK_1684 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPK_1684 IPR016039 Thiolase-like YPK_1685 IPR001227 Acyl transferase domain YPK_1685 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YPK_1685 IPR014043 Acyl transferase YPK_1685 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPK_1685 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPK_1685 IPR020801 Polyketide synthase, acyl transferase domain YPK_1685 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPK_1686 IPR002347 Glucose/ribitol dehydrogenase YPK_1686 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YPK_1686 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_1686 IPR036291 YPK_1686 YPK_1687 IPR003231 Acyl carrier protein (ACP) YPK_1687 IPR006162 Phosphopantetheine attachment site YPK_1687 IPR009081 Acyl carrier protein-like YPK_1687 IPR036736 YPK_1687 YPK_1688 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_1688 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_1688 IPR016039 Thiolase-like YPK_1688 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPK_1688 IPR018201 Beta-ketoacyl synthase, active site YPK_1688 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_1689 IPR001544 Aminotransferase, class IV YPK_1689 IPR017824 Aminodeoxychorismate lyase, class IV YPK_1689 IPR018300 Aminotransferase, class IV, conserved site YPK_1689 IPR036038 YPK_1689 YPK_1690 IPR003770 Uncharacterised protein family UPF0755, YceG-like YPK_1691 IPR018094 Thymidylate kinase YPK_1691 IPR018095 Thymidylate kinase, conserved site YPK_1691 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1691 IPR039430 YPK_1691 YPK_1692 IPR004622 DNA polymerase III, delta prime subunit YPK_1692 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPK_1692 IPR015199 DNA polymerase III, delta subunit, C-terminal YPK_1692 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1693 IPR001130 TatD family YPK_1693 IPR015991 Uncharacterised deoxyribonuclease TatD-type YPK_1693 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPK_1693 IPR032466 YPK_1693 YPK_1694 IPR001996 Phosphotransferase system, IIB component, type 1 YPK_1694 IPR003352 Phosphotransferase system, EIIC YPK_1694 IPR011299 PTS system glucose-specific IIBC component YPK_1694 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPK_1694 IPR036878 YPK_1694 YPK_1695 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal YPK_1695 IPR036291 YPK_1695 YPK_1696 IPR001310 Histidine triad (HIT) protein YPK_1696 IPR019808 Histidine triad, conserved site YPK_1696 IPR036265 YPK_1696 YPK_1697 IPR010824 Protein of unknown function DUF1425 YPK_1697 IPR038483 YPK_1697 YPK_1698 IPR014094 Penicillin-binding protein activator LpoB YPK_1699 IPR002575 Aminoglycoside phosphotransferase YPK_1699 IPR011009 Protein kinase-like domain YPK_1699 IPR014093 Thiamine kinase YPK_1700 IPR001764 Glycoside hydrolase, family 3, N-terminal YPK_1700 IPR017853 Glycoside hydrolase, superfamily YPK_1700 IPR019800 Glycoside hydrolase, family 3, active site YPK_1700 IPR022956 Beta-hexosaminidase, bacterial YPK_1700 IPR036962 YPK_1700 YPK_1701 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPK_1701 IPR022987 Uncharacterised protein family UPF0227 YPK_1701 IPR029058 Alpha/Beta hydrolase fold YPK_1702 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_1702 IPR036188 YPK_1702 YPK_1705 IPR008816 Glycine zipper 2TM domain YPK_1706 IPR001650 Helicase, C-terminal YPK_1706 IPR003711 CarD-like/TRCF domain YPK_1706 IPR004576 Transcription-repair coupling factor YPK_1706 IPR005118 Transcription-repair-coupling factor, C-terminal domain YPK_1706 IPR011545 DEAD/DEAH box helicase domain YPK_1706 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_1706 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1706 IPR036101 YPK_1706 YPK_1706 IPR037235 YPK_1706 YPK_1707 IPR003838 Permease FtsX-like YPK_1707 IPR011925 Lipoprotein releasing system, transmembrane protein, LolC/E family YPK_1707 IPR025857 MacB-like periplasmic core domain YPK_1708 IPR003439 ABC transporter-like YPK_1708 IPR003593 AAA+ ATPase domain YPK_1708 IPR011924 Lipoprotein releasing system, ATP-binding protein YPK_1708 IPR017871 ABC transporter, conserved site YPK_1708 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1709 IPR003838 Permease FtsX-like YPK_1709 IPR011925 Lipoprotein releasing system, transmembrane protein, LolC/E family YPK_1709 IPR011926 Lipoprotein releasing system, transmembrane protein LolE YPK_1709 IPR025857 MacB-like periplasmic core domain YPK_1710 IPR000600 ROK YPK_1710 IPR023505 N-acetyl-D-glucosamine kinase YPK_1711 IPR003000 Sirtuin family YPK_1711 IPR026591 Sirtuin family, catalytic core small domain YPK_1711 IPR027546 Sirtuin, class III YPK_1711 IPR029035 DHS-like NAD/FAD-binding domain YPK_1712 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPK_1712 IPR002933 Peptidase M20 YPK_1712 IPR010161 Peptidase M20B, tripeptide aminopeptidase YPK_1712 IPR011650 Peptidase M20, dimerisation domain YPK_1712 IPR036264 YPK_1712 YPK_1713 IPR003347 JmjC domain YPK_1714 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_1714 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_1714 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_1714 IPR015014 PhoQ Sensor YPK_1714 IPR036097 YPK_1714 YPK_1714 IPR036890 YPK_1714 YPK_1714 IPR038429 YPK_1714 YPK_1715 IPR001789 Signal transduction response regulator, receiver domain YPK_1715 IPR001867 Signal transduction response regulator, C-terminal YPK_1715 IPR011006 CheY-like superfamily YPK_1715 IPR036388 YPK_1715 YPK_1716 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_1716 IPR027385 Outer membrane protein beta-barrel YPK_1718 IPR000362 Fumarate lyase family YPK_1718 IPR004769 Adenylosuccinate lyase YPK_1718 IPR008948 L-Aspartase-like YPK_1718 IPR013539 Adenylosuccinate lyase PurB, C-terminal YPK_1718 IPR020557 Fumarate lyase, conserved site YPK_1718 IPR022761 Fumarate lyase, N-terminal YPK_1718 IPR024083 Fumarase/histidase, N-terminal YPK_1719 IPR007451 Uncharacterised protein family UPF0274 YPK_1719 IPR035932 YPK_1719 YPK_1720 IPR004506 tRNA-specific 2-thiouridylase YPK_1720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1720 IPR023382 Adenine nucleotide alpha hydrolase-like domains YPK_1721 IPR000086 NUDIX hydrolase domain YPK_1721 IPR015797 NUDIX hydrolase domain-like YPK_1721 IPR020084 NUDIX hydrolase, conserved site YPK_1721 IPR020476 NUDIX hydrolase YPK_1722 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPK_1722 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPK_1722 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPK_1722 IPR020103 Pseudouridine synthase, catalytic domain YPK_1723 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic YPK_1723 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPK_1723 IPR024084 Isopropylmalate dehydrogenase-like domain YPK_1724 IPR000843 Transcription regulator HTH, LacI YPK_1724 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_1724 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1724 IPR028082 Periplasmic binding protein-like I YPK_1726 IPR000014 PAS domain YPK_1726 IPR001610 PAC motif YPK_1726 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1726 IPR004090 Chemotaxis methyl-accepting receptor YPK_1726 IPR013655 PAS fold-3 YPK_1726 IPR035965 YPK_1726 YPK_1727 IPR008030 NmrA-like domain YPK_1727 IPR036291 YPK_1727 YPK_1728 IPR002577 Helix-turn-helix, HxlR type YPK_1728 IPR036388 YPK_1728 YPK_1728 IPR036390 YPK_1728 YPK_1730 IPR000560 Histidine phosphatase superfamily, clade-2 YPK_1730 IPR029033 Histidine phosphatase superfamily YPK_1730 IPR033379 YPK_1730 YPK_1731 IPR017704 Putative selenium-binding protein YdfZ YPK_1732 IPR021266 Kdo hydroxylase YPK_1733 IPR000485 AsnC-type HTH domain YPK_1733 IPR011008 Dimeric alpha-beta barrel YPK_1733 IPR019887 Transcription regulator AsnC-type, C-terminal YPK_1733 IPR019888 Transcription regulator AsnC-type YPK_1733 IPR036388 YPK_1733 YPK_1733 IPR036390 YPK_1733 YPK_1735 IPR019713 Inner membrane protein YlaC YPK_1737 IPR011032 GroES (chaperonin 10)-like YPK_1737 IPR013149 Alcohol dehydrogenase, C-terminal YPK_1737 IPR013154 Alcohol dehydrogenase GroES-like YPK_1737 IPR014189 Quinone oxidoreductase PIG3 YPK_1737 IPR020843 Polyketide synthase, enoylreductase YPK_1737 IPR036291 YPK_1737 YPK_1739 IPR004199 Beta galactosidase small chain/ domain 5 YPK_1739 IPR006101 Glycoside hydrolase, family 2 YPK_1739 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YPK_1739 IPR006103 Glycoside hydrolase, family 2, TIM barrel YPK_1739 IPR006104 Glycosyl hydrolases family 2, sugar binding domain YPK_1739 IPR008979 Galactose-binding domain-like YPK_1739 IPR011013 Galactose mutarotase-like domain YPK_1739 IPR013783 Immunoglobulin-like fold YPK_1739 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPK_1739 IPR017853 Glycoside hydrolase, superfamily YPK_1739 IPR023230 Glycoside hydrolase, family 2, conserved site YPK_1739 IPR023232 Glycoside hydrolase, family 2, active site YPK_1739 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase YPK_1739 IPR032312 YPK_1739 YPK_1739 IPR036156 YPK_1739 YPK_1740 IPR002059 Cold-shock protein, DNA-binding YPK_1740 IPR011129 Cold shock protein YPK_1740 IPR012156 Cold shock, CspA YPK_1740 IPR012340 Nucleic acid-binding, OB-fold YPK_1740 IPR019844 Cold-shock conserved site YPK_1741 IPR019717 Dextransucrase DSRB YPK_1742 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding YPK_1742 IPR003660 HAMP linker domain YPK_1742 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1742 IPR004090 Chemotaxis methyl-accepting receptor YPK_1742 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPK_1742 IPR035440 YPK_1742 YPK_1743 IPR003416 MgtC/SapB/SrpB transporter YPK_1744 IPR001757 Cation-transporting P-type ATPase YPK_1744 IPR004014 Cation-transporting P-type ATPase, N-terminal YPK_1744 IPR006068 Cation-transporting P-type ATPase, C-terminal YPK_1744 IPR006415 Magnesium-transporting P-type ATPase, subfamily IIIB YPK_1744 IPR008250 P-type ATPase, A domain YPK_1744 IPR018303 P-type ATPase, phosphorylation site YPK_1744 IPR023214 HAD-like domain YPK_1744 IPR023298 P-type ATPase, transmembrane domain YPK_1744 IPR023299 P-type ATPase, cytoplasmic domain N YPK_1744 IPR036412 YPK_1744 YPK_1745 IPR023559 Flagellar transcriptional activator FlhD YPK_1745 IPR036194 YPK_1745 YPK_1746 IPR007944 Flagellar transcriptional activator FlhC YPK_1747 IPR000540 Flagellar motor protein MotA, conserved site YPK_1747 IPR002898 MotA/TolQ/ExbB proton channel YPK_1747 IPR022522 Flagellar motor stator, MotA YPK_1748 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_1748 IPR025713 Motility protein B, N-terminal domain YPK_1748 IPR036737 YPK_1748 YPK_1749 IPR002545 CheW-like protein YPK_1749 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_1749 IPR004105 Histidine kinase CheA-like, homodimeric domain YPK_1749 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_1749 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPK_1749 IPR015162 CheY binding YPK_1749 IPR035891 YPK_1749 YPK_1749 IPR036061 YPK_1749 YPK_1749 IPR036097 YPK_1749 YPK_1749 IPR036641 YPK_1749 YPK_1749 IPR036890 YPK_1749 YPK_1749 IPR037006 YPK_1749 YPK_1750 IPR002545 CheW-like protein YPK_1750 IPR036061 YPK_1750 YPK_1751 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein YPK_1751 IPR019286 Protein of unknown function DUF2339, transmembrane YPK_1753 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding YPK_1753 IPR003660 HAMP linker domain YPK_1753 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_1753 IPR004090 Chemotaxis methyl-accepting receptor YPK_1753 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPK_1753 IPR035440 YPK_1753 YPK_1756 IPR000780 MCP methyltransferase, CheR-type YPK_1756 IPR022641 MCP methyltransferase, CheR-type, all-alpha domain, N-terminal YPK_1756 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YPK_1756 IPR026024 Chemotaxis protein methyltransferase CheR YPK_1756 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1756 IPR036804 YPK_1756 YPK_1757 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YPK_1757 IPR001789 Signal transduction response regulator, receiver domain YPK_1757 IPR008248 Signal transduction response regulator, chemotaxis, CheB YPK_1757 IPR011006 CheY-like superfamily YPK_1757 IPR035909 YPK_1757 YPK_1758 IPR001789 Signal transduction response regulator, receiver domain YPK_1758 IPR011006 CheY-like superfamily YPK_1759 IPR007439 Chemotaxis phosphatase, CheZ YPK_1760 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPK_1760 IPR036365 YPK_1760 YPK_1760 IPR036366 YPK_1760 YPK_1760 IPR036505 YPK_1760 YPK_1761 IPR005594 YadA-like, C-terminal YPK_1761 IPR008635 Coiled stalk of trimeric autotransporter adhesin YPK_1761 IPR008640 Head domain of trimeric autotransporter adhesin YPK_1761 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_1764 IPR000821 Alanine racemase YPK_1764 IPR001608 Alanine racemase, N-terminal YPK_1764 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPK_1764 IPR011079 Alanine racemase, C-terminal YPK_1764 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPK_1764 IPR029066 PLP-binding barrel YPK_1768 IPR002641 Patatin/Phospholipase A2-related YPK_1768 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPK_1771 IPR007374 ASCH domain YPK_1771 IPR009326 Protein of unknown function DUF984 YPK_1771 IPR015947 PUA-like domain YPK_1772 IPR009950 Protein of unknown function DUF1480 YPK_1773 IPR007893 Spore coat protein U YPK_1774 IPR000015 Outer membrane usher protein YPK_1774 IPR025949 PapC-like, C-terminal domain YPK_1775 IPR008962 PapD-like YPK_1775 IPR013783 Immunoglobulin-like fold YPK_1775 IPR016147 PapD, N-terminal, bacterial YPK_1776 IPR007893 Spore coat protein U YPK_1777 IPR007893 Spore coat protein U YPK_1778 IPR007893 Spore coat protein U YPK_1779 IPR003399 Mammalian cell entry-related YPK_1780 IPR005219 Conserved hypothetical protein CHP00155 YPK_1780 IPR007498 Paraquat-inducible protein A YPK_1781 IPR003018 GAF domain YPK_1781 IPR029016 GAF domain-like YPK_1782 IPR016103 ProQ/FinO domain YPK_1782 IPR023529 Transporter ProP effector, ProQ YPK_1782 IPR035236 YPK_1782 YPK_1782 IPR036442 YPK_1782 YPK_1783 IPR001478 PDZ domain YPK_1783 IPR004447 C-terminal-processing peptidase S41A YPK_1783 IPR005151 Tail specific protease YPK_1783 IPR020992 Tail specific protease, C-terminal YPK_1783 IPR029045 ClpP/crotonase-like domain YPK_1783 IPR036034 YPK_1783 YPK_1784 IPR001915 Peptidase M48 YPK_1784 IPR022919 Peptidase M48, protease HtpX, putative YPK_1786 IPR008966 Adhesion domain YPK_1786 IPR036937 YPK_1786 YPK_1786 IPR039458 YPK_1786 YPK_1787 IPR001829 Pili assembly chaperone, bacterial YPK_1787 IPR008962 PapD-like YPK_1787 IPR013783 Immunoglobulin-like fold YPK_1787 IPR016147 PapD, N-terminal, bacterial YPK_1787 IPR016148 Pili assembly chaperone, C-terminal domain YPK_1787 IPR036316 YPK_1787 YPK_1788 IPR000015 Outer membrane usher protein YPK_1788 IPR018030 Fimbrial membrane usher, conserved site YPK_1788 IPR025885 PapC, N-terminal domain YPK_1788 IPR025949 PapC-like, C-terminal domain YPK_1788 IPR037224 YPK_1788 YPK_1789 IPR000259 Fimbrial-type adhesion domain YPK_1789 IPR008966 Adhesion domain YPK_1789 IPR036937 YPK_1789 YPK_1790 IPR001829 Pili assembly chaperone, bacterial YPK_1790 IPR008962 PapD-like YPK_1790 IPR013783 Immunoglobulin-like fold YPK_1790 IPR016147 PapD, N-terminal, bacterial YPK_1790 IPR016148 Pili assembly chaperone, C-terminal domain YPK_1790 IPR018046 Pili assembly chaperone, conserved site YPK_1790 IPR036316 YPK_1790 YPK_1791 IPR011701 Major facilitator superfamily YPK_1791 IPR036259 YPK_1791 YPK_1792 IPR015943 WD40/YVTN repeat-like-containing domain YPK_1792 IPR027946 Oligogalacturonate lyase domain YPK_1793 IPR005471 Transcription regulator IclR, N-terminal YPK_1793 IPR014757 Transcription regulator IclR, C-terminal YPK_1793 IPR029016 GAF domain-like YPK_1793 IPR036388 YPK_1793 YPK_1793 IPR036390 YPK_1793 YPK_1794 IPR002477 Peptidoglycan binding-like YPK_1794 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPK_1794 IPR036365 YPK_1794 YPK_1794 IPR036366 YPK_1794 YPK_1794 IPR036505 YPK_1794 YPK_1795 IPR001991 Sodium:dicarboxylate symporter YPK_1795 IPR036458 YPK_1795 YPK_1796 IPR007404 Protein of unknown function DUF457 YPK_1796 IPR016956 LexA regulated metal-dependent membrane hydrolase, predicted YPK_1797 IPR009331 Oligogalacturonate-specific porin YPK_1798 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_1799 IPR003439 ABC transporter-like YPK_1799 IPR003593 AAA+ ATPase domain YPK_1799 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1799 IPR017871 ABC transporter, conserved site YPK_1799 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1800 IPR000515 MetI-like domain YPK_1800 IPR035906 YPK_1800 YPK_1801 IPR000515 MetI-like domain YPK_1801 IPR035906 YPK_1801 YPK_1802 IPR010702 Periplasmic pectate lyase YPK_1803 IPR002347 Glucose/ribitol dehydrogenase YPK_1803 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase YPK_1803 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_1803 IPR036291 YPK_1803 YPK_1804 IPR007045 5-keto 4-deoxyuronate isomerase YPK_1804 IPR011051 RmlC-like cupin domain YPK_1804 IPR014710 RmlC-like jelly roll fold YPK_1804 IPR021120 KduI/IolB isomerase YPK_1804 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain YPK_1805 IPR011051 RmlC-like cupin domain YPK_1805 IPR013096 Cupin 2, conserved barrel YPK_1805 IPR014710 RmlC-like jelly roll fold YPK_1805 IPR025499 Pectin degradation protein KdgF YPK_1806 IPR001207 Transposase, mutator type YPK_1808 IPR006439 HAD hydrolase, subfamily IA YPK_1808 IPR023198 Phosphoglycolate phosphatase, domain 2 YPK_1808 IPR023214 HAD-like domain YPK_1808 IPR036412 YPK_1808 YPK_1809 IPR025229 YniB-like protein YPK_1811 IPR011009 Protein kinase-like domain YPK_1811 IPR016477 Fructosamine/Ketosamine-3-kinase YPK_1812 IPR001626 ABC-3 YPK_1812 IPR037294 YPK_1812 YPK_1813 IPR001626 ABC-3 YPK_1813 IPR037294 YPK_1813 YPK_1814 IPR003439 ABC transporter-like YPK_1814 IPR003593 AAA+ ATPase domain YPK_1814 IPR017871 ABC transporter, conserved site YPK_1814 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1815 IPR006127 Periplasmic solute binding protein family YPK_1815 IPR006128 Adhesion lipoprotein YPK_1815 IPR006129 Adhesin B YPK_1816 IPR000189 Prokaryotic transglycosylase, active site YPK_1816 IPR008258 Lytic transglycosylase-like SLT domain YPK_1816 IPR023346 Lysozyme-like domain YPK_1817 IPR002771 Multiple antibiotic resistance (MarC)-related YPK_1819 IPR025309 KTSC domain YPK_1820 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YPK_1820 IPR002320 Threonine-tRNA ligase, class IIa YPK_1820 IPR004095 TGS YPK_1820 IPR004154 Anticodon-binding YPK_1820 IPR012675 Beta-grasp domain YPK_1820 IPR012676 TGS-like YPK_1820 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPK_1820 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain YPK_1820 IPR036621 YPK_1820 YPK_1821 IPR001288 Translation initiation factor 3 YPK_1821 IPR019815 Translation initiation factor 3, C-terminal YPK_1821 IPR036788 YPK_1821 YPK_1822 IPR001706 Ribosomal protein L35, non-mitochondrial YPK_1822 IPR018265 Ribosomal protein L35, conserved site YPK_1822 IPR021137 Ribosomal protein L35 YPK_1822 IPR037229 YPK_1822 YPK_1823 IPR005813 Ribosomal protein L20 YPK_1823 IPR035566 YPK_1823 YPK_1824 IPR002319 Phenylalanyl-tRNA synthetase YPK_1824 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal YPK_1824 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YPK_1824 IPR010978 tRNA-binding arm YPK_1824 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial YPK_1825 IPR002547 tRNA-binding domain YPK_1825 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit YPK_1825 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding YPK_1825 IPR005146 B3/B4 tRNA-binding domain YPK_1825 IPR005147 tRNA synthetase, B5-domain YPK_1825 IPR009061 DNA binding domain, putative YPK_1825 IPR012340 Nucleic acid-binding, OB-fold YPK_1825 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 YPK_1825 IPR036690 YPK_1825 YPK_1826 IPR000119 Histone-like bacterial DNA-binding protein YPK_1826 IPR005684 Integration host factor, alpha subunit YPK_1826 IPR010992 Integration host factor (IHF)-like DNA-binding domain YPK_1826 IPR020816 Histone-like DNA-binding protein, conserved site YPK_1827 IPR019638 Protein of unknown function DUF2502 YPK_1828 IPR000522 ABC transporter, permease protein YPK_1828 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC YPK_1828 IPR037294 YPK_1828 YPK_1829 IPR000889 Glutathione peroxidase YPK_1829 IPR029759 Glutathione peroxidase active site YPK_1829 IPR033674 YPK_1829 YPK_1829 IPR036249 YPK_1829 YPK_1830 IPR003439 ABC transporter-like YPK_1830 IPR003593 AAA+ ATPase domain YPK_1830 IPR017871 ABC transporter, conserved site YPK_1830 IPR023693 ABC transporter, vitamin B12, BtuD YPK_1830 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1831 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_1831 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1831 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1831 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1831 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB YPK_1832 IPR001173 Glycosyltransferase 2-like YPK_1832 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase YPK_1832 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1833 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_1833 IPR002376 Formyl transferase, N-terminal YPK_1833 IPR005793 Formyl transferase, C-terminal YPK_1833 IPR011034 Formyl transferase, C-terminal-like YPK_1833 IPR021168 Bifunctional polymyxin resistance protein, ArnA YPK_1833 IPR036291 YPK_1833 YPK_1833 IPR036477 YPK_1833 YPK_1834 IPR002509 Polysaccharide deacetylase YPK_1834 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPK_1834 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable YPK_1835 IPR003342 Glycosyl transferase, family 39 YPK_1835 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase YPK_1836 IPR000620 Drug/metabolite transporter YPK_1836 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YPK_1837 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YPK_1838 IPR000064 Endopeptidase, NLPC/P60 domain YPK_1838 IPR038765 YPK_1838 YPK_1839 IPR004143 Biotin/lipoate A/B protein ligase YPK_1839 IPR004562 Lipoyltransferase/lipoate-protein ligase YPK_1839 IPR019491 Lipoate protein ligase, C-terminal YPK_1839 IPR023741 Lipoate-protein ligase A YPK_1840 IPR003846 Uncharacterised protein family UPF0061 YPK_1841 IPR006218 DAHP synthetase I/KDSA YPK_1841 IPR006219 DHAP synthase, class 1 YPK_1841 IPR013785 Aldolase-type TIM barrel YPK_1842 IPR005177 Bifunctional kinase-pyrophosphorylase YPK_1842 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain YPK_1842 IPR026530 Phosphoenolpyruvate synthase regulatory protein YPK_1843 IPR000121 PEP-utilising enzyme, C-terminal YPK_1843 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding YPK_1843 IPR006319 Phosphoenolpyruvate synthase YPK_1843 IPR008279 PEP-utilising enzyme, mobile domain YPK_1843 IPR013815 ATP-grasp fold, subdomain 1 YPK_1843 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_1843 IPR018274 PEP-utilising enzyme, active site YPK_1843 IPR023151 PEP-utilising enzyme, conserved site YPK_1843 IPR036637 YPK_1843 YPK_1844 IPR002549 Uncharacterised protein family UPF0118 YPK_1845 IPR004113 FAD-linked oxidase, C-terminal YPK_1845 IPR006094 FAD linked oxidase, N-terminal YPK_1845 IPR009051 Alpha-helical ferredoxin YPK_1845 IPR016164 FAD-linked oxidase-like, C-terminal YPK_1845 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1845 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1845 IPR036318 YPK_1845 YPK_1846 IPR003736 Phenylacetic acid degradation-related domain YPK_1846 IPR006683 Thioesterase superfamily YPK_1846 IPR029069 HotDog domain YPK_1846 IPR030863 YPK_1846 YPK_1847 IPR000361 FeS cluster biogenesis YPK_1847 IPR016092 FeS cluster insertion protein YPK_1847 IPR017870 FeS cluster insertion, C-terminal, conserved site YPK_1847 IPR035903 YPK_1847 YPK_1848 IPR000825 SUF system FeS cluster assembly, SufBD YPK_1848 IPR010231 SUF system FeS cluster assembly, SufB YPK_1848 IPR037284 YPK_1848 YPK_1849 IPR003439 ABC transporter-like YPK_1849 IPR003593 AAA+ ATPase domain YPK_1849 IPR010230 FeS cluster assembly SUF system, ATPase SufC YPK_1849 IPR017871 ABC transporter, conserved site YPK_1849 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1850 IPR000825 SUF system FeS cluster assembly, SufBD YPK_1850 IPR011542 SUF system FeS cluster assembly, SufD YPK_1850 IPR037284 YPK_1850 YPK_1851 IPR000192 Aminotransferase class V domain YPK_1851 IPR010970 Cysteine desulfurase, SufS YPK_1851 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1851 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1851 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1851 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YPK_1852 IPR003808 Fe-S metabolism associated domain, SufE-like YPK_1852 IPR023939 Cysteine desulfuration protein SufE YPK_1853 IPR005490 L,D-transpeptidase catalytic domain YPK_1853 IPR038063 YPK_1853 YPK_1854 IPR006817 Lipoprotein leucine-zipper YPK_1854 IPR016367 Murein-lipoprotein YPK_1855 IPR001697 Pyruvate kinase YPK_1855 IPR011037 Pyruvate kinase-like, insert domain YPK_1855 IPR015793 Pyruvate kinase, barrel YPK_1855 IPR015795 Pyruvate kinase, C-terminal YPK_1855 IPR015806 Pyruvate kinase, beta-barrel insert domain YPK_1855 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_1855 IPR018209 Pyruvate kinase, active site YPK_1855 IPR036918 YPK_1855 YPK_1856 IPR002528 Multi antimicrobial extrusion protein YPK_1856 IPR022913 Multidrug resistance protein MdtK YPK_1857 IPR001783 Lumazine-binding protein YPK_1857 IPR017938 Riboflavin synthase-like beta-barrel YPK_1857 IPR023366 ATP synthase subunit alpha-like domain YPK_1857 IPR026017 Lumazine-binding domain YPK_1858 IPR003333 Mycolic acid cyclopropane synthase YPK_1858 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_1859 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPK_1859 IPR011701 Major facilitator superfamily YPK_1859 IPR036259 YPK_1859 YPK_1860 IPR000847 Transcription regulator HTH, LysR YPK_1860 IPR005119 LysR, substrate-binding YPK_1860 IPR036388 YPK_1860 YPK_1860 IPR036390 YPK_1860 YPK_1862 IPR000843 Transcription regulator HTH, LacI YPK_1862 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1862 IPR023588 Transcription regulator HTH, PurR YPK_1862 IPR028082 Periplasmic binding protein-like I YPK_1863 IPR001189 Manganese/iron superoxide dismutase YPK_1863 IPR019831 Manganese/iron superoxide dismutase, N-terminal YPK_1863 IPR019832 Manganese/iron superoxide dismutase, C-terminal YPK_1863 IPR019833 Manganese/iron superoxide dismutase, binding site YPK_1863 IPR036314 YPK_1863 YPK_1863 IPR036324 YPK_1863 YPK_1864 IPR000064 Endopeptidase, NLPC/P60 domain YPK_1864 IPR038765 YPK_1864 YPK_1866 IPR002109 Glutaredoxin YPK_1866 IPR004480 Monothiol glutaredoxin-related YPK_1866 IPR014434 Monothiol glutaredoxin YPK_1866 IPR036249 YPK_1866 YPK_1868 IPR005987 Ribonuclease T YPK_1868 IPR012337 Ribonuclease H-like domain YPK_1868 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_1868 IPR036397 YPK_1868 YPK_1869 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPK_1869 IPR004361 Glyoxalase I YPK_1869 IPR018146 Glyoxalase I, conserved site YPK_1869 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_1871 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPK_1871 IPR013785 Aldolase-type TIM barrel YPK_1872 IPR001647 DNA-binding HTH domain, TetR-type YPK_1872 IPR009057 Homeodomain-like YPK_1872 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal YPK_1872 IPR036271 YPK_1872 YPK_1873 IPR000917 Sulfatase YPK_1873 IPR012549 Domain of unknown function DUF1705 YPK_1873 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_1873 IPR017850 Alkaline-phosphatase-like, core domain YPK_1874 IPR010710 Protein of unknown function DUF1289 YPK_1875 IPR020471 Aldo/keto reductase subgroup YPK_1875 IPR023210 NADP-dependent oxidoreductase domain YPK_1875 IPR036812 YPK_1875 YPK_1876 IPR000835 MarR-type HTH domain YPK_1876 IPR023071 Transcriptional regulator, SlyA YPK_1876 IPR023187 Transcriptional regulator MarR-type, conserved site YPK_1876 IPR036388 YPK_1876 YPK_1876 IPR036390 YPK_1876 YPK_1877 IPR008816 Glycine zipper 2TM domain YPK_1878 IPR005338 Anhydro-N-acetylmuramic acid kinase YPK_1879 IPR018660 C-type lysozyme, inhibitor YPK_1879 IPR036328 YPK_1879 YPK_1880 IPR000659 Pyridoxamine 5'-phosphate oxidase YPK_1880 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain YPK_1880 IPR012349 FMN-binding split barrel YPK_1880 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YPK_1880 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site YPK_1881 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_1881 IPR002305 Aminoacyl-tRNA synthetase, class Ic YPK_1881 IPR002307 Tyrosine-tRNA ligase YPK_1881 IPR002942 RNA-binding S4 domain YPK_1881 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1881 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 YPK_1881 IPR036986 YPK_1881 YPK_1882 IPR004625 Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase YPK_1882 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YPK_1882 IPR023685 Pyridoxal kinase PdxY YPK_1882 IPR029056 Ribokinase-like YPK_1883 IPR004045 Glutathione S-transferase, N-terminal YPK_1883 IPR004046 Glutathione S-transferase, C-terminal YPK_1883 IPR036249 YPK_1883 YPK_1883 IPR036282 YPK_1883 YPK_1884 IPR020317 Uncharacterised protein family YjbD YPK_1885 IPR009698 Protein of unknown function DUF1282 YPK_1886 IPR000109 Proton-dependent oligopeptide transporter family YPK_1886 IPR005279 Amino acid/peptide transporter family YPK_1886 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site YPK_1886 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A YPK_1886 IPR036259 YPK_1886 YPK_1887 IPR029032 AhpD-like YPK_1888 IPR003439 ABC transporter-like YPK_1888 IPR003593 AAA+ ATPase domain YPK_1888 IPR017871 ABC transporter, conserved site YPK_1888 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1889 IPR003439 ABC transporter-like YPK_1889 IPR003593 AAA+ ATPase domain YPK_1889 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPK_1889 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1890 IPR000515 MetI-like domain YPK_1890 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_1890 IPR035906 YPK_1890 YPK_1891 IPR000515 MetI-like domain YPK_1891 IPR035906 YPK_1891 YPK_1892 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_1892 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site YPK_1892 IPR030678 YPK_1892 YPK_1893 IPR002078 RNA polymerase sigma factor 54 interaction domain YPK_1893 IPR002197 DNA binding HTH domain, Fis-type YPK_1893 IPR003593 AAA+ ATPase domain YPK_1893 IPR009057 Homeodomain-like YPK_1893 IPR014317 Transcription activator PspF YPK_1893 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_1893 IPR025944 Sigma-54 interaction domain, conserved site YPK_1893 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1894 IPR007157 PspA/IM30 YPK_1894 IPR014319 Phage shock protein, PspA YPK_1895 IPR009554 Phage shock protein, PspB YPK_1896 IPR007168 Phage shock protein, PspC, N-terminal YPK_1896 IPR014320 Phage shock protein, PspC YPK_1897 IPR014321 Phage shock protein, PspD YPK_1898 IPR007413 Protein of unknown function DUF463, YcjX-like protein YPK_1899 IPR006507 Uncharacterised protein family UPF0283 YPK_1899 IPR021147 Protein of unknown function DUF697 YPK_1900 IPR014914 RES YPK_1901 IPR011979 Conserved hypothetical protein CHP02293 YPK_1901 IPR024467 Domain of unknown function DUF2384 YPK_1902 IPR000014 PAS domain YPK_1902 IPR002078 RNA polymerase sigma factor 54 interaction domain YPK_1902 IPR003593 AAA+ ATPase domain YPK_1902 IPR009057 Homeodomain-like YPK_1902 IPR013767 PAS fold YPK_1902 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_1902 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_1902 IPR025944 Sigma-54 interaction domain, conserved site YPK_1902 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1902 IPR030828 YPK_1902 YPK_1902 IPR035965 YPK_1902 YPK_1903 IPR002065 Putative thiol peroxidase Tpx YPK_1903 IPR013740 Redoxin YPK_1903 IPR018219 Thiol peroxidase conserved site YPK_1903 IPR036249 YPK_1903 YPK_1904 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPK_1904 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPK_1904 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YPK_1904 IPR029017 Enolase N-terminal domain-like YPK_1904 IPR029065 Enolase C-terminal domain-like YPK_1904 IPR036849 YPK_1904 YPK_1905 IPR000834 Peptidase M14, carboxypeptidase A YPK_1906 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_1906 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site YPK_1906 IPR030678 YPK_1906 YPK_1907 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPK_1908 IPR000551 MerR-type HTH domain YPK_1908 IPR009061 DNA binding domain, putative YPK_1910 IPR013094 Alpha/beta hydrolase fold-3 YPK_1910 IPR029058 Alpha/Beta hydrolase fold YPK_1912 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase YPK_1912 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA YPK_1912 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1912 IPR035107 YPK_1912 YPK_1913 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain YPK_1913 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YPK_1913 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPK_1913 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPK_1913 IPR011895 Pyruvate-flavodoxin oxidoreductase YPK_1913 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1913 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1913 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain YPK_1913 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YPK_1913 IPR029061 Thiamin diphosphate-binding fold YPK_1913 IPR033412 YPK_1913 YPK_1913 IPR037112 YPK_1913 YPK_1914 IPR000390 Small multidrug resistance protein family YPK_1915 IPR003416 MgtC/SapB/SrpB transporter YPK_1916 IPR005590 Protein of unknown function DUF333 YPK_1917 IPR005184 Domain of unknown function DUF306, Meta/HslJ YPK_1917 IPR038670 YPK_1917 YPK_1918 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_1918 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPK_1918 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPK_1918 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_1918 IPR036291 YPK_1918 YPK_1919 IPR021730 Dicarboxylate transport YPK_1920 IPR025985 YnbE-like lipoprotein YPK_1921 IPR008309 Uncharacterised conserved protein UCP025560 YPK_1922 IPR000669 Mannitol dehydrogenase YPK_1922 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_1922 IPR013118 Mannitol dehydrogenase, C-terminal YPK_1922 IPR013131 Mannitol dehydrogenase, N-terminal YPK_1922 IPR013328 Dehydrogenase, multihelical YPK_1922 IPR036291 YPK_1922 YPK_1923 IPR007324 Sugar-binding domain, putative YPK_1923 IPR036388 YPK_1923 YPK_1923 IPR037171 YPK_1923 YPK_1924 IPR003680 Flavodoxin-like fold YPK_1924 IPR023048 NADH-azoreductase, FMN-dependent YPK_1924 IPR029039 Flavoprotein-like YPK_1925 IPR001650 Helicase, C-terminal YPK_1925 IPR003593 AAA+ ATPase domain YPK_1925 IPR007502 Helicase-associated domain YPK_1925 IPR010222 RNA helicase, ATP-dependent DEAH box, HrpA-type YPK_1925 IPR011545 DEAD/DEAH box helicase domain YPK_1925 IPR011709 Domain of unknown function DUF1605 YPK_1925 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_1925 IPR024590 RNA helicase, ATP-dependent DEAH box, HrpA, C-terminal YPK_1925 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1926 IPR009241 Addiction module killer protein YPK_1927 IPR001387 Cro/C1-type helix-turn-helix domain YPK_1927 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1928 IPR001254 Peptidase S1 YPK_1928 IPR001314 Peptidase S1A, chymotrypsin-type YPK_1928 IPR009003 Trypsin-like cysteine/serine peptidase domain YPK_1928 IPR018114 Peptidase S1, trypsin family, active site YPK_1928 IPR033116 YPK_1928 YPK_1930 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPK_1930 IPR016174 Di-haem cytochrome, transmembrane YPK_1931 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YPK_1931 IPR023480 Uncharacterised protein family UPF0312/YceI YPK_1931 IPR036761 YPK_1931 YPK_1935 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase YPK_1936 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_1936 IPR003660 HAMP linker domain YPK_1936 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_1936 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_1936 IPR036097 YPK_1936 YPK_1936 IPR036890 YPK_1936 YPK_1937 IPR001789 Signal transduction response regulator, receiver domain YPK_1937 IPR001867 Signal transduction response regulator, C-terminal YPK_1937 IPR011006 CheY-like superfamily YPK_1937 IPR016032 Signal transduction response regulator, C-terminal effector YPK_1937 IPR036388 YPK_1937 YPK_1939 IPR002293 Amino acid/polyamine transporter I YPK_1939 IPR004754 Amino acid antiporter YPK_1940 IPR010854 Domain of unknown function DUF1471 YPK_1940 IPR025539 YdgH protein YPK_1940 IPR025543 Dodecin-like YPK_1940 IPR036275 YPK_1940 YPK_1941 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YPK_1941 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YPK_1941 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 YPK_1941 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 YPK_1941 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal YPK_1941 IPR026255 NAD(P) transhydrogenase, alpha subunit YPK_1941 IPR036291 YPK_1941 YPK_1942 IPR012136 NADP transhydrogenase, beta subunit YPK_1942 IPR029035 DHS-like NAD/FAD-binding domain YPK_1942 IPR034300 YPK_1942 YPK_1943 IPR006016 UspA YPK_1944 IPR000595 Cyclic nucleotide-binding domain YPK_1944 IPR012318 Helix-turn-helix motif, Crp-type YPK_1944 IPR014710 RmlC-like jelly roll fold YPK_1944 IPR018335 Transcription regulator HTH, Crp-type, conserved site YPK_1944 IPR018490 Cyclic nucleotide-binding-like YPK_1944 IPR036388 YPK_1944 YPK_1944 IPR036390 YPK_1944 YPK_1945 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPK_1945 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPK_1945 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPK_1945 IPR023546 Methylated-DNA--protein-cysteine methyltransferase YPK_1945 IPR036217 YPK_1945 YPK_1945 IPR036388 YPK_1945 YPK_1945 IPR036631 YPK_1945 YPK_1946 IPR001952 Alkaline phosphatase YPK_1946 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_1946 IPR017850 Alkaline-phosphatase-like, core domain YPK_1946 IPR018299 Alkaline phosphatase, active site YPK_1947 IPR025266 TerB, N-terminal YPK_1947 IPR028932 TerB-C domain YPK_1947 IPR029024 TerB-like YPK_1948 IPR006439 HAD hydrolase, subfamily IA YPK_1948 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB YPK_1948 IPR023198 Phosphoglycolate phosphatase, domain 2 YPK_1948 IPR023214 HAD-like domain YPK_1948 IPR036412 YPK_1948 YPK_1950 IPR000399 TPP-binding enzyme, conserved site YPK_1950 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPK_1950 IPR012000 Thiamine pyrophosphate enzyme, central domain YPK_1950 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPK_1950 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPK_1950 IPR029035 DHS-like NAD/FAD-binding domain YPK_1950 IPR029061 Thiamin diphosphate-binding fold YPK_1951 IPR010846 Protein of unknown function DUF1460 YPK_1951 IPR038765 YPK_1951 YPK_1952 IPR017030 Virulence effector, SrfC YPK_1953 IPR009216 Virulence factor SrfB YPK_1955 IPR000845 Nucleoside phosphorylase domain YPK_1955 IPR011271 AMP nucleosidase YPK_1955 IPR018953 AMP nucleoside phosphorylase, N-terminal YPK_1955 IPR035994 YPK_1955 YPK_1955 IPR037109 YPK_1955 YPK_1956 IPR003439 ABC transporter-like YPK_1956 IPR003593 AAA+ ATPase domain YPK_1956 IPR017871 ABC transporter, conserved site YPK_1956 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1957 IPR000515 MetI-like domain YPK_1957 IPR035906 YPK_1957 YPK_1960 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YPK_1960 IPR036215 YPK_1960 YPK_1961 IPR003439 ABC transporter-like YPK_1961 IPR003593 AAA+ ATPase domain YPK_1961 IPR017871 ABC transporter, conserved site YPK_1961 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1962 IPR001851 ABC transporter, permease YPK_1963 IPR025997 Periplasmic binding protein domain YPK_1963 IPR028082 Periplasmic binding protein-like I YPK_1965 IPR000843 Transcription regulator HTH, LacI YPK_1965 IPR010982 Lambda repressor-like, DNA-binding domain YPK_1965 IPR028082 Periplasmic binding protein-like I YPK_1967 IPR004770 Na+/H+ antiporter NhaC YPK_1967 IPR018461 Na+/H+ antiporter, NhaC-like YPK_1968 IPR004839 Aminotransferase, class I/classII YPK_1968 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_1968 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_1968 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1968 IPR027619 Putative C-S lyase YPK_1970 IPR002513 Tn3 transposase DDE domain YPK_1971 IPR032278 YPK_1971 YPK_1972 IPR000620 Drug/metabolite transporter YPK_1974 IPR015590 Aldehyde dehydrogenase domain YPK_1974 IPR016160 Aldehyde dehydrogenase, cysteine active site YPK_1974 IPR016161 Aldehyde/histidinol dehydrogenase YPK_1974 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_1974 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_1974 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPK_1975 IPR002078 RNA polymerase sigma factor 54 interaction domain YPK_1975 IPR002197 DNA binding HTH domain, Fis-type YPK_1975 IPR003593 AAA+ ATPase domain YPK_1975 IPR009057 Homeodomain-like YPK_1975 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1975 IPR029016 GAF domain-like YPK_1976 IPR002347 Glucose/ribitol dehydrogenase YPK_1976 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_1976 IPR036291 YPK_1976 YPK_1977 IPR009700 Protein of unknown function DUF1283 YPK_1978 IPR010595 Protein of unknown function DUF1161 YPK_1979 IPR001807 Chloride channel, voltage gated YPK_1979 IPR014743 Chloride channel, core YPK_1979 IPR023790 Chloride channel, voltage-gated, ClcB YPK_1980 IPR004472 Dethiobiotin synthase BioD YPK_1980 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1981 IPR000600 ROK YPK_1981 IPR036388 YPK_1981 YPK_1981 IPR036390 YPK_1981 YPK_1982 IPR000847 Transcription regulator HTH, LysR YPK_1982 IPR005119 LysR, substrate-binding YPK_1982 IPR036388 YPK_1982 YPK_1982 IPR036390 YPK_1982 YPK_1983 IPR005829 Sugar transporter, conserved site YPK_1983 IPR011701 Major facilitator superfamily YPK_1983 IPR036259 YPK_1983 YPK_1984 IPR008865 DNA replication terminus site-binding protein YPK_1984 IPR036381 YPK_1984 YPK_1984 IPR036384 YPK_1984 YPK_1985 IPR000362 Fumarate lyase family YPK_1985 IPR005677 Fumarate hydratase, class II YPK_1985 IPR008948 L-Aspartase-like YPK_1985 IPR018951 Fumarase C, C-terminal YPK_1985 IPR020557 Fumarate lyase, conserved site YPK_1985 IPR022761 Fumarate lyase, N-terminal YPK_1985 IPR024083 Fumarase/histidase, N-terminal YPK_1986 IPR001250 Mannose-6-phosphate isomerase, type I YPK_1986 IPR011051 RmlC-like cupin domain YPK_1986 IPR014710 RmlC-like jelly roll fold YPK_1986 IPR016305 Mannose-6-phosphate isomerase YPK_1986 IPR018050 Phosphomannose isomerase, type I, conserved site YPK_1987 IPR010352 Protein of unknown function DUF945 YPK_1988 IPR000524 Transcription regulator HTH, GntR YPK_1988 IPR011663 UbiC transcription regulator-associated YPK_1988 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPK_1988 IPR036388 YPK_1988 YPK_1988 IPR036390 YPK_1988 YPK_1993 IPR001365 Adenosine/AMP deaminase domain YPK_1993 IPR006330 Adenosine/adenine deaminase YPK_1993 IPR006650 Adenosine/AMP deaminase active site YPK_1993 IPR028893 Adenosine deaminase YPK_1993 IPR032466 YPK_1993 YPK_1994 IPR016833 Putative sodium bile acid cotransporter YPK_1994 IPR038770 YPK_1994 YPK_1995 IPR000683 Oxidoreductase, N-terminal YPK_1995 IPR004104 Oxidoreductase, C-terminal YPK_1995 IPR036291 YPK_1995 YPK_1996 IPR003313 AraC-type arabinose-binding/dimerisation domain YPK_1996 IPR009057 Homeodomain-like YPK_1996 IPR018060 DNA binding HTH domain, AraC-type YPK_1996 IPR018062 HTH domain AraC-type, conserved site YPK_1996 IPR020449 Transcription regulator HTH, AraC- type YPK_1996 IPR037923 YPK_1996 YPK_1997 IPR001851 ABC transporter, permease YPK_1998 IPR003439 ABC transporter-like YPK_1998 IPR003593 AAA+ ATPase domain YPK_1998 IPR017871 ABC transporter, conserved site YPK_1998 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1999 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_1999 IPR026266 L-arabinose-binding periplasmic protein YPK_1999 IPR028082 Periplasmic binding protein-like I YPK_2000 IPR005929 L-ribulokinase YPK_2000 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_2000 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_2001 IPR003762 L-arabinose isomerase YPK_2001 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YPK_2001 IPR009015 L-fucose isomerase, N-terminal/central domain YPK_2001 IPR024664 L-arabinose isomerase, C-terminal YPK_2001 IPR038583 YPK_2001 YPK_2002 IPR003439 ABC transporter-like YPK_2002 IPR003593 AAA+ ATPase domain YPK_2002 IPR005074 Peptidase C39, bacteriocin processing YPK_2002 IPR010132 ATPase, type I secretion system, HlyB YPK_2002 IPR011527 ABC transporter type 1, transmembrane domain YPK_2002 IPR017871 ABC transporter, conserved site YPK_2002 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2002 IPR036640 YPK_2002 YPK_2003 IPR003997 RTX secretion protein D, Gram-negative bacteria YPK_2003 IPR006144 Secretion protein HlyD, conserved site YPK_2003 IPR010129 Type I secretion membrane fusion protein, HlyD YPK_2003 IPR039562 YPK_2003 YPK_2004 IPR003439 ABC transporter-like YPK_2004 IPR003593 AAA+ ATPase domain YPK_2004 IPR010132 ATPase, type I secretion system, HlyB YPK_2004 IPR011527 ABC transporter type 1, transmembrane domain YPK_2004 IPR017871 ABC transporter, conserved site YPK_2004 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2004 IPR036640 YPK_2004 YPK_2005 IPR019690 Protein of unknown function DUF2569 YPK_2006 IPR003667 Electron transport complex, Rnf/Nqr YPK_2006 IPR011293 Electron transport complex, RnfA YPK_2007 IPR007202 4Fe-4S domain YPK_2007 IPR010207 Electron transport complex, RnfB YPK_2007 IPR011005 Dihydropteroate synthase-like YPK_2007 IPR016463 Electron transport complex, RnfB, Proteobacteria YPK_2007 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_2008 IPR009051 Alpha-helical ferredoxin YPK_2008 IPR010208 Electron transport complex protein RnfC YPK_2008 IPR011538 NADH:ubiquinone oxidoreductase, 51kDa subunit YPK_2008 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_2008 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_2008 IPR019554 Soluble ligand binding domain YPK_2008 IPR026902 RnfC Barrel sandwich hybrid domain YPK_2008 IPR037225 YPK_2008 YPK_2009 IPR009057 Homeodomain-like YPK_2009 IPR011256 Regulatory factor, effector binding domain YPK_2009 IPR018060 DNA binding HTH domain, AraC-type YPK_2009 IPR020449 Transcription regulator HTH, AraC- type YPK_2009 IPR029442 GyrI-like small molecule binding domain YPK_2010 IPR004338 NADH-quinone reductase NQR2/RnfD YPK_2010 IPR011303 Electron transport complex, RnfD YPK_2011 IPR007329 FMN-binding YPK_2011 IPR010209 Electron transport complex, RnfG YPK_2012 IPR003667 Electron transport complex, Rnf/Nqr YPK_2012 IPR010968 Electron transport complex, RnfE YPK_2013 IPR000445 Helix-hairpin-helix motif YPK_2013 IPR003265 HhH-GPD domain YPK_2013 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YPK_2013 IPR004035 Endonuclease III, iron-sulphur binding site YPK_2013 IPR004036 Endonuclease III-like, conserved site-2 YPK_2013 IPR005759 Endonuclease III YPK_2013 IPR011257 DNA glycosylase YPK_2013 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YPK_2014 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_2014 IPR036291 YPK_2014 YPK_2015 IPR011701 Major facilitator superfamily YPK_2015 IPR036259 YPK_2015 YPK_2016 IPR001900 YPK_2016 YPK_2016 IPR003029 Ribosomal protein S1, RNA-binding domain YPK_2016 IPR004476 Ribonuclease II/ribonuclease R YPK_2016 IPR011129 Cold shock protein YPK_2016 IPR011804 Ribonuclease II YPK_2016 IPR012340 Nucleic acid-binding, OB-fold YPK_2016 IPR013223 Ribonuclease B, N-terminal OB domain YPK_2016 IPR022966 Ribonuclease II/R, conserved site YPK_2017 IPR003706 Carbon starvation protein CstA YPK_2017 IPR025299 CstA C-terminal domain YPK_2018 IPR007423 Protein of unknown function DUF466 YPK_2019 IPR001585 Transaldolase YPK_2019 IPR004731 Transaldolase 3A/3B YPK_2019 IPR013785 Aldolase-type TIM barrel YPK_2019 IPR018225 Transaldolase, active site YPK_2020 IPR018680 Protein of unknown function DUF2164 YPK_2021 IPR001303 Class II aldolase/adducin N-terminal YPK_2021 IPR004661 L-ribulose-5-phosphate 4-epimerase YPK_2021 IPR036409 YPK_2021 YPK_2022 IPR008816 Glycine zipper 2TM domain YPK_2023 IPR001950 Translation initiation factor SUI1 YPK_2023 IPR005872 Archaeal/bacterial translation initiation factor SUI1 YPK_2023 IPR036877 YPK_2023 YPK_2024 IPR001754 Orotidine 5'-phosphate decarboxylase domain YPK_2024 IPR011060 Ribulose-phosphate binding barrel YPK_2024 IPR013785 Aldolase-type TIM barrel YPK_2024 IPR014732 Orotidine 5'-phosphate decarboxylase YPK_2024 IPR018089 Orotidine 5'-phosphate decarboxylase, active site YPK_2025 IPR010985 Ribbon-helix-helix YPK_2025 IPR013321 Arc-type ribbon-helix-helix YPK_2026 IPR011990 Tetratricopeptide-like helical domain YPK_2026 IPR019734 Tetratricopeptide repeat YPK_2026 IPR030865 YPK_2026 YPK_2027 IPR010445 Protein of unknown function DUF1049 YPK_2027 IPR032906 YPK_2027 YPK_2028 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2028 IPR036938 YPK_2028 YPK_2029 IPR000926 GTP cyclohydrolase II, RibA YPK_2029 IPR032677 YPK_2029 YPK_2029 IPR036144 YPK_2029 YPK_2030 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel YPK_2030 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YPK_2030 IPR006249 Aconitate/iron regulatory protein 2 YPK_2030 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPK_2030 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPK_2030 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPK_2030 IPR036008 YPK_2030 YPK_2032 IPR000847 Transcription regulator HTH, LysR YPK_2032 IPR005119 LysR, substrate-binding YPK_2032 IPR036388 YPK_2032 YPK_2032 IPR036390 YPK_2032 YPK_2033 IPR003601 DNA topoisomerase, type IA, domain 2 YPK_2033 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPK_2033 IPR005733 DNA topoisomerase I, bacterial-type YPK_2033 IPR006171 Toprim domain YPK_2033 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type YPK_2033 IPR013497 DNA topoisomerase, type IA, central YPK_2033 IPR013498 DNA topoisomerase, type IA, zn finger YPK_2033 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPK_2033 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPK_2033 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPK_2033 IPR023405 DNA topoisomerase, type IA, core domain YPK_2033 IPR023406 DNA topoisomerase, type IA, active site YPK_2033 IPR028612 DNA topoisomerase I, type IA YPK_2035 IPR019633 Protein of unknown function DUF2498 YPK_2035 IPR038191 YPK_2035 YPK_2036 IPR002142 Peptidase S49 YPK_2036 IPR013703 Peptidase S49, N-terminal proteobacteria YPK_2036 IPR029045 ClpP/crotonase-like domain YPK_2037 IPR002347 Glucose/ribitol dehydrogenase YPK_2037 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_2037 IPR036291 YPK_2037 YPK_2038 IPR003724 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YPK_2038 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain YPK_2038 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2039 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPK_2039 IPR002942 RNA-binding S4 domain YPK_2039 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPK_2039 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPK_2039 IPR020103 Pseudouridine synthase, catalytic domain YPK_2039 IPR036986 YPK_2039 YPK_2040 IPR006070 YrdC-like domain YPK_2040 IPR017945 DHBP synthase RibB-like alpha/beta domain YPK_2041 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPK_2041 IPR004013 PHP, C-terminal YPK_2041 IPR016195 Polymerase/histidinol phosphatase-like YPK_2042 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial YPK_2042 IPR005801 ADC synthase YPK_2042 IPR006805 Anthranilate synthase component I, N-terminal YPK_2042 IPR015890 Chorismate binding, C-terminal YPK_2042 IPR019999 Anthranilate synthase component I - like YPK_2043 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain YPK_2043 IPR017926 Glutamine amidotransferase YPK_2043 IPR029062 Class I glutamine amidotransferase-like YPK_2044 IPR000312 Glycosyl transferase, family 3 YPK_2044 IPR005940 Anthranilate phosphoribosyl transferase YPK_2044 IPR017459 Glycosyl transferase family 3, N-terminal domain YPK_2044 IPR035902 YPK_2044 YPK_2044 IPR036320 YPK_2044 YPK_2045 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain YPK_2045 IPR001468 Indole-3-glycerol phosphate synthase, conserved site YPK_2045 IPR011060 Ribulose-phosphate binding barrel YPK_2045 IPR013785 Aldolase-type TIM barrel YPK_2045 IPR013798 Indole-3-glycerol phosphate synthase YPK_2046 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_2046 IPR006653 Tryptophan synthase, beta chain, conserved site YPK_2046 IPR006654 Tryptophan synthase, beta chain YPK_2046 IPR023026 Tryptophan synthase beta chain/beta chain-like YPK_2046 IPR036052 YPK_2046 YPK_2047 IPR002028 Tryptophan synthase, alpha chain YPK_2047 IPR011060 Ribulose-phosphate binding barrel YPK_2047 IPR013785 Aldolase-type TIM barrel YPK_2047 IPR018204 Tryptophan synthase, alpha chain, active site YPK_2048 IPR007055 BON domain YPK_2048 IPR014004 Transport-associated and nodulation domain, bacteria YPK_2049 IPR000758 Virulence-related outer membrane protein YPK_2049 IPR005618 Outer membrane protein, OmpW YPK_2049 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_2050 IPR009627 Uncharacterised protein family UPF0259 YPK_2051 IPR002645 STAS domain YPK_2051 IPR011547 Sulphate transporter YPK_2051 IPR036513 YPK_2051 YPK_2053 IPR006008 Intracellular septation protein A YPK_2054 IPR006683 Thioesterase superfamily YPK_2054 IPR029069 HotDog domain YPK_2055 IPR003538 Gram-negative bacterial TonB protein YPK_2055 IPR006260 TonB, C-terminal YPK_2055 IPR037682 YPK_2055 YPK_2057 IPR005545 YCII-related YPK_2057 IPR011008 Dimeric alpha-beta barrel YPK_2058 IPR027392 Transcription factor zinc-finger YPK_2061 IPR000758 Virulence-related outer membrane protein YPK_2061 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_2061 IPR027385 Outer membrane protein beta-barrel YPK_2063 IPR001736 Phospholipase D/Transphosphatidylase YPK_2063 IPR022924 Cardiolipin synthase YPK_2063 IPR025202 Phospholipase D-like domain YPK_2063 IPR027379 Cardiolipin synthase N-terminal YPK_2063 IPR030840 YPK_2063 YPK_2064 IPR007376 dsDNA mimic, putative YPK_2064 IPR036763 YPK_2064 YPK_2066 IPR003439 ABC transporter-like YPK_2066 IPR003593 AAA+ ATPase domain YPK_2066 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPK_2066 IPR017871 ABC transporter, conserved site YPK_2066 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2067 IPR003439 ABC transporter-like YPK_2067 IPR003593 AAA+ ATPase domain YPK_2067 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPK_2067 IPR017871 ABC transporter, conserved site YPK_2067 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2068 IPR000515 MetI-like domain YPK_2068 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_2068 IPR035906 YPK_2068 YPK_2069 IPR000515 MetI-like domain YPK_2069 IPR035906 YPK_2069 YPK_2070 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_2070 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site YPK_2070 IPR030678 YPK_2070 YPK_2071 IPR002771 Multiple antibiotic resistance (MarC)-related YPK_2072 IPR001670 Alcohol dehydrogenase, iron-type YPK_2072 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase YPK_2072 IPR015590 Aldehyde dehydrogenase domain YPK_2072 IPR016161 Aldehyde/histidinol dehydrogenase YPK_2072 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_2072 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_2072 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPK_2073 IPR001267 Thymidine kinase YPK_2073 IPR020633 Thymidine kinase, conserved site YPK_2073 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2074 IPR001801 Histone-like protein H-NS YPK_2074 IPR027444 Histone-like protein H-NS, C-terminal domain YPK_2074 IPR027454 Histone-like protein H-NS family, oligomerisation domain YPK_2074 IPR037150 YPK_2074 YPK_2077 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPK_2077 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_2077 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPK_2077 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPK_2077 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPK_2077 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type YPK_2077 IPR036220 YPK_2077 YPK_2077 IPR036291 YPK_2077 YPK_2078 IPR001789 Signal transduction response regulator, receiver domain YPK_2078 IPR011006 CheY-like superfamily YPK_2078 IPR028616 Regulator of RpoS YPK_2078 IPR036457 YPK_2078 YPK_2079 IPR004027 SEC-C motif YPK_2079 IPR023006 Uncharacterised protein family UPF0225 YPK_2079 IPR032710 YPK_2079 YPK_2080 IPR002376 Formyl transferase, N-terminal YPK_2080 IPR002912 ACT domain YPK_2080 IPR004810 Formyltetrahydrofolate deformylase YPK_2080 IPR036477 YPK_2080 YPK_2083 IPR000847 Transcription regulator HTH, LysR YPK_2083 IPR036388 YPK_2083 YPK_2083 IPR036390 YPK_2083 YPK_2085 IPR004808 AP endonuclease 1 YPK_2085 IPR005135 Endonuclease/exonuclease/phosphatase YPK_2085 IPR020847 AP endonuclease 1, binding site YPK_2085 IPR020848 AP endonuclease 1, conserved site YPK_2085 IPR036691 YPK_2085 YPK_2086 IPR000086 NUDIX hydrolase domain YPK_2086 IPR015797 NUDIX hydrolase domain-like YPK_2086 IPR020084 NUDIX hydrolase, conserved site YPK_2086 IPR020476 NUDIX hydrolase YPK_2087 IPR009971 Protein of unknown function DUF1496 YPK_2088 IPR003601 DNA topoisomerase, type IA, domain 2 YPK_2088 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YPK_2088 IPR005738 DNA topoisomerase III YPK_2088 IPR006171 Toprim domain YPK_2088 IPR013497 DNA topoisomerase, type IA, central YPK_2088 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPK_2088 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPK_2088 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPK_2088 IPR023405 DNA topoisomerase, type IA, core domain YPK_2088 IPR023406 DNA topoisomerase, type IA, active site YPK_2089 IPR004536 Selenide water dikinase YPK_2089 IPR010918 AIR synthase-related protein, C-terminal domain YPK_2089 IPR016188 PurM, N-terminal-like YPK_2089 IPR023061 Selenide, water dikinase, class I YPK_2089 IPR036676 YPK_2089 YPK_2089 IPR036921 YPK_2089 YPK_2090 IPR000415 Nitroreductase-like YPK_2090 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YPK_2090 IPR029479 Nitroreductase YPK_2091 IPR002142 Peptidase S49 YPK_2091 IPR004634 Peptidase S49, protease IV YPK_2091 IPR004635 Peptidase S49, SppA YPK_2091 IPR029045 ClpP/crotonase-like domain YPK_2092 IPR006033 L-asparaginase, type I YPK_2092 IPR006034 Asparaginase/glutaminase YPK_2092 IPR020827 Asparaginase/glutaminase, active site 1 YPK_2092 IPR027473 L-asparaginase, C-terminal domain YPK_2092 IPR027474 L-asparaginase, N-terminal YPK_2092 IPR027475 Asparaginase/glutaminase, active site 2 YPK_2092 IPR036152 YPK_2092 YPK_2092 IPR037152 YPK_2092 YPK_2093 IPR000868 Isochorismatase-like YPK_2093 IPR036380 YPK_2093 YPK_2094 IPR009749 Protein of unknown function DUF1315 YPK_2095 IPR002579 Peptide methionine sulphoxide reductase MrsB YPK_2095 IPR011057 Mss4-like YPK_2096 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I YPK_2096 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YPK_2096 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YPK_2096 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site YPK_2096 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YPK_2096 IPR036291 YPK_2096 YPK_2097 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPK_2097 IPR011013 Galactose mutarotase-like domain YPK_2097 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPK_2097 IPR025532 Glucose-6-phosphate 1-epimerase YPK_2098 IPR010583 MltA-interacting MipA YPK_2100 IPR010650 PrkA C-terminal domain YPK_2100 IPR013153 PrkA AAA domain YPK_2100 IPR016230 Serine-protein kinase, PrkA YPK_2100 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2102 IPR006698 Thermus phage phiYS40, Orf56 YPK_2103 IPR000620 Drug/metabolite transporter YPK_2104 IPR000847 Transcription regulator HTH, LysR YPK_2104 IPR005119 LysR, substrate-binding YPK_2104 IPR036388 YPK_2104 YPK_2104 IPR036390 YPK_2104 YPK_2105 IPR003829 Pirin, N-terminal domain YPK_2105 IPR008778 Pirin, C-terminal domain YPK_2105 IPR011051 RmlC-like cupin domain YPK_2105 IPR012093 Pirin YPK_2105 IPR014710 RmlC-like jelly roll fold YPK_2106 IPR001958 Tetracycline resistance protein, TetA/multidrug resistance protein MdtG YPK_2106 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPK_2106 IPR005829 Sugar transporter, conserved site YPK_2106 IPR011701 Major facilitator superfamily YPK_2106 IPR036259 YPK_2106 YPK_2107 IPR006076 FAD dependent oxidoreductase YPK_2107 IPR023080 D-amino acid dehydrogenase small subunit, DadA YPK_2107 IPR036188 YPK_2107 YPK_2108 IPR007390 Sporulation stage V, protein R YPK_2109 IPR000524 Transcription regulator HTH, GntR YPK_2109 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_2109 IPR014178 Fatty acid response transcription factor FadR YPK_2109 IPR028374 FadR, C-terminal domain YPK_2109 IPR036388 YPK_2109 YPK_2109 IPR036390 YPK_2109 YPK_2110 IPR004671 Na+/H+ antiporter NhaB YPK_2111 IPR003752 Disulphide bond formation protein DsbB/BdbC YPK_2111 IPR022920 Disulphide bond formation protein DsbB YPK_2111 IPR023380 Disulphide bond formation protein DsbB-like domain YPK_2115 IPR000192 Aminotransferase class V domain YPK_2115 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2115 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2115 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2115 IPR016454 Cysteine desulfurase, NifS YPK_2116 IPR011701 Major facilitator superfamily YPK_2116 IPR036259 YPK_2116 YPK_2117 IPR005358 Putative zinc- or iron-chelating domain containing protein YPK_2117 IPR008228 Uncharacterised conserved protein UCP006173 YPK_2118 IPR011234 Fumarylacetoacetase, C-terminal-related YPK_2118 IPR036663 YPK_2118 YPK_2119 IPR011970 Lytic murein transglycosylase YPK_2119 IPR023346 Lysozyme-like domain YPK_2119 IPR031304 YPK_2119 YPK_2120 IPR027354 YcgL domain YPK_2120 IPR038068 YPK_2120 YPK_2121 IPR005526 Septum formation inhibitor MinC, C-terminal YPK_2121 IPR007874 Septum formation inhibitor MinC, N-terminal YPK_2121 IPR013033 Septum formation inhibitor MinC YPK_2121 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal YPK_2121 IPR036145 YPK_2121 YPK_2121 IPR038061 YPK_2121 YPK_2122 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YPK_2122 IPR010223 ATP binding protein MinD, bacterial-type YPK_2122 IPR025501 ATP binding protein MinD YPK_2122 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2123 IPR005527 Septum formation topological specificity factor MinE YPK_2123 IPR036707 YPK_2123 YPK_2124 IPR002121 HRDC domain YPK_2124 IPR002562 3'-5' exonuclease domain YPK_2124 IPR006292 Ribonuclease D YPK_2124 IPR010997 HRDC-like YPK_2124 IPR012337 Ribonuclease H-like domain YPK_2124 IPR036397 YPK_2124 YPK_2125 IPR000873 AMP-dependent synthetase/ligase YPK_2125 IPR020845 AMP-binding, conserved site YPK_2125 IPR025110 AMP-binding enzyme C-terminal domain YPK_2126 IPR004658 Outer membrane lipoprotein Slp YPK_2127 IPR000905 Gcp-like domain YPK_2127 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ YPK_2128 IPR006555 ATP-dependent helicase, C-terminal YPK_2128 IPR010614 DEAD2 YPK_2128 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_2128 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2129 IPR006175 YjgF/Yer057p/UK114 family YPK_2129 IPR019897 YjgF-like protein, conserved site YPK_2129 IPR035959 YPK_2129 YPK_2130 IPR000390 Small multidrug resistance protein family YPK_2130 IPR023737 Spermidine export protein MdtI YPK_2131 IPR000390 Small multidrug resistance protein family YPK_2131 IPR023740 Spermidine export protein MdtJ YPK_2132 IPR000887 KDPG/KHG aldolase YPK_2132 IPR013785 Aldolase-type TIM barrel YPK_2132 IPR031337 YPK_2132 YPK_2132 IPR031338 YPK_2132 YPK_2134 IPR001282 Glucose-6-phosphate dehydrogenase YPK_2134 IPR019796 Glucose-6-phosphate dehydrogenase, active site YPK_2134 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding YPK_2134 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal YPK_2134 IPR036291 YPK_2134 YPK_2135 IPR000281 Helix-turn-helix protein RpiR YPK_2135 IPR001347 Sugar isomerase (SIS) YPK_2135 IPR009057 Homeodomain-like YPK_2135 IPR036388 YPK_2135 YPK_2136 IPR001697 Pyruvate kinase YPK_2136 IPR011037 Pyruvate kinase-like, insert domain YPK_2136 IPR015793 Pyruvate kinase, barrel YPK_2136 IPR015795 Pyruvate kinase, C-terminal YPK_2136 IPR015806 Pyruvate kinase, beta-barrel insert domain YPK_2136 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_2136 IPR018209 Pyruvate kinase, active site YPK_2136 IPR036918 YPK_2136 YPK_2138 IPR004960 Bacterial lipid A biosynthesis acyltransferase YPK_2138 IPR011921 Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YPK_2139 IPR007340 Opacity-associated protein A YPK_2139 IPR011055 Duplicated hybrid motif YPK_2139 IPR013731 Opacity-associated protein A, N-terminal YPK_2139 IPR016047 Peptidase M23 YPK_2139 IPR018392 LysM domain YPK_2140 IPR006127 Periplasmic solute binding protein family YPK_2141 IPR003439 ABC transporter-like YPK_2141 IPR003593 AAA+ ATPase domain YPK_2141 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2142 IPR001626 ABC-3 YPK_2142 IPR037294 YPK_2142 YPK_2143 IPR003593 AAA+ ATPase domain YPK_2143 IPR004605 DNA helicase, Holliday junction RuvB type YPK_2143 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal YPK_2143 IPR008824 DNA helicase, Holliday junction RuvB type, N-terminal YPK_2143 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2143 IPR036388 YPK_2143 YPK_2143 IPR036390 YPK_2143 YPK_2144 IPR000085 Bacterial DNA recombination protein RuvA YPK_2144 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPK_2144 IPR010994 RuvA domain 2-like YPK_2144 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal YPK_2144 IPR012340 Nucleic acid-binding, OB-fold YPK_2144 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial YPK_2144 IPR036267 YPK_2144 YPK_2145 IPR002176 Crossover junction endodeoxyribonuclease RuvC YPK_2145 IPR012337 Ribonuclease H-like domain YPK_2145 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site YPK_2145 IPR036397 YPK_2145 YPK_2146 IPR002876 Transcriptional regulator TACO1-like YPK_2146 IPR017856 Integrase, N-terminal zinc-binding domain-like YPK_2146 IPR026564 Transcriptional regulator TACO1-like, domain 3 YPK_2146 IPR029072 YebC-like YPK_2147 IPR000086 NUDIX hydrolase domain YPK_2147 IPR003564 dATP pyrophosphohydrolase YPK_2147 IPR015797 NUDIX hydrolase domain-like YPK_2147 IPR020084 NUDIX hydrolase, conserved site YPK_2148 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPK_2148 IPR004115 GAD-like domain YPK_2148 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPK_2148 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPK_2148 IPR004524 Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type YPK_2148 IPR012340 Nucleic acid-binding, OB-fold YPK_2148 IPR029351 GAD domain YPK_2149 IPR002763 Protein of unknown function DUF72 YPK_2149 IPR036520 YPK_2149 YPK_2150 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YPK_2150 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain YPK_2151 IPR005271 tRNA (cmo5U34)-methyltransferase YPK_2151 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2152 IPR010017 tRNA (mo5U34)-methyltransferase YPK_2152 IPR027555 tRNA (mo5U34)-methyltransferase-like YPK_2152 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2153 IPR005627 Copper homeostasis protein CutC YPK_2153 IPR023648 Copper homeostasis CutC domain YPK_2153 IPR036822 YPK_2153 YPK_2154 IPR010393 Protein of unknown function DUF991 YPK_2154 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_2155 IPR001278 Arginine-tRNA ligase YPK_2155 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_2155 IPR005148 Arginyl tRNA synthetase N-terminal domain YPK_2155 IPR008909 DALR anticodon binding YPK_2155 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPK_2155 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2155 IPR035684 YPK_2155 YPK_2155 IPR036695 YPK_2155 YPK_2156 IPR008638 Filamentous haemagglutinin, N-terminal YPK_2156 IPR011050 Pectin lyase fold/virulence factor YPK_2156 IPR012334 Pectin lyase fold YPK_2156 IPR025157 Haemagluttinin repeat YPK_2157 IPR005565 Haemolysin activator HlyB YPK_2157 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_2157 IPR027282 Two partner secretion pathway transporter YPK_2157 IPR035251 YPK_2157 YPK_2158 IPR004268 Flagellin assembly, membrane protein MviN YPK_2161 IPR000182 GNAT domain YPK_2161 IPR016181 Acyl-CoA N-acyltransferase YPK_2162 IPR011701 Major facilitator superfamily YPK_2162 IPR022855 Multidrug resistance protein MdtH YPK_2162 IPR036259 YPK_2162 YPK_2163 IPR010835 Protein of unknown function DUF1439 YPK_2164 IPR020945 DMSO/Nitrate reductase chaperone YPK_2164 IPR026269 Tat proofreading chaperone DmsD-type YPK_2164 IPR036411 YPK_2164 YPK_2165 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPK_2165 IPR004013 PHP, C-terminal YPK_2165 IPR016195 Polymerase/histidinol phosphatase-like YPK_2165 IPR023710 Probable phosphatase YcdX YPK_2166 IPR000600 ROK YPK_2166 IPR036388 YPK_2166 YPK_2166 IPR036390 YPK_2166 YPK_2167 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPK_2167 IPR030395 YPK_2167 YPK_2168 IPR003439 ABC transporter-like YPK_2168 IPR003593 AAA+ ATPase domain YPK_2168 IPR017871 ABC transporter, conserved site YPK_2168 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2169 IPR000515 MetI-like domain YPK_2169 IPR035906 YPK_2169 YPK_2170 IPR000515 MetI-like domain YPK_2170 IPR035906 YPK_2170 YPK_2171 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_2172 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPK_2172 IPR030395 YPK_2172 YPK_2174 IPR001902 Sulphate anion transporter YPK_2174 IPR002645 STAS domain YPK_2174 IPR011547 Sulphate transporter YPK_2174 IPR018045 Sulphate anion transporter, conserved site YPK_2174 IPR036513 YPK_2174 YPK_2175 IPR006218 DAHP synthetase I/KDSA YPK_2175 IPR006269 3-deoxy-8-phosphooctulonate synthase YPK_2175 IPR013785 Aldolase-type TIM barrel YPK_2176 IPR011990 Tetratricopeptide-like helical domain YPK_2176 IPR032698 YPK_2176 YPK_2177 IPR007360 Invasion gene expression up-regulator, SirB YPK_2178 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_2178 IPR004556 Modification methylase HemK YPK_2178 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific YPK_2178 IPR025714 Methyltransferase domain YPK_2178 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2179 IPR000352 Peptide chain release factor class I/class II YPK_2179 IPR004373 Peptide chain release factor 1 YPK_2179 IPR005139 Peptide chain release factor YPK_2180 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase YPK_2180 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPK_2180 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YPK_2180 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain YPK_2180 IPR018214 Glutamyl-tRNA reductase, conserved site YPK_2180 IPR036291 YPK_2180 YPK_2180 IPR036343 YPK_2180 YPK_2180 IPR036453 YPK_2180 YPK_2181 IPR004565 Outer membrane lipoprotein LolB YPK_2181 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPK_2182 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YPK_2182 IPR006204 GHMP kinase N-terminal domain YPK_2182 IPR013750 GHMP kinase, C-terminal domain YPK_2182 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_2182 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2182 IPR036554 YPK_2182 YPK_2184 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site YPK_2184 IPR005946 Ribose-phosphate diphosphokinase YPK_2184 IPR029057 Phosphoribosyltransferase-like YPK_2184 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain YPK_2184 IPR037515 YPK_2184 YPK_2185 IPR019698 Protein of unknown function DUF2583 YPK_2186 IPR001328 Peptidyl-tRNA hydrolase YPK_2186 IPR018171 Peptidyl-tRNA hydrolase, conserved site YPK_2186 IPR036416 YPK_2186 YPK_2187 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 YPK_2187 IPR006073 GTP binding domain YPK_2187 IPR012675 Beta-grasp domain YPK_2187 IPR012676 TGS-like YPK_2187 IPR013029 Domain of unknown function DUF933 YPK_2187 IPR023192 TGS-like domain YPK_2187 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2188 IPR025145 Protein of unknown function DUF4087 YPK_2189 IPR016174 Di-haem cytochrome, transmembrane YPK_2189 IPR025517 Domain of unknown function DUF4405 YPK_2190 IPR008254 Flavodoxin/nitric oxide synthase YPK_2190 IPR029039 Flavoprotein-like YPK_2191 IPR002925 Dienelactone hydrolase YPK_2191 IPR029058 Alpha/Beta hydrolase fold YPK_2192 IPR001789 Signal transduction response regulator, receiver domain YPK_2192 IPR001867 Signal transduction response regulator, C-terminal YPK_2192 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response YPK_2192 IPR011006 CheY-like superfamily YPK_2192 IPR016032 Signal transduction response regulator, C-terminal effector YPK_2192 IPR036388 YPK_2192 YPK_2193 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_2193 IPR003660 HAMP linker domain YPK_2193 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_2193 IPR006290 Heavy metal sensor kinase YPK_2193 IPR036097 YPK_2193 YPK_2193 IPR036890 YPK_2193 YPK_2194 IPR003779 Carboxymuconolactone decarboxylase-like YPK_2194 IPR029032 AhpD-like YPK_2195 IPR011051 RmlC-like cupin domain YPK_2195 IPR013096 Cupin 2, conserved barrel YPK_2195 IPR014710 RmlC-like jelly roll fold YPK_2196 IPR000073 Alpha/beta hydrolase fold-1 YPK_2196 IPR029058 Alpha/Beta hydrolase fold YPK_2197 IPR011989 Armadillo-like helical YPK_2197 IPR016024 Armadillo-type fold YPK_2198 IPR011051 RmlC-like cupin domain YPK_2199 IPR011051 RmlC-like cupin domain YPK_2203 IPR013217 Methyltransferase type 12 YPK_2203 IPR016584 S-adenosyl-L-methionine dependent methyltransferase, YbcY, predicted YPK_2203 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2204 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YPK_2204 IPR022133 Ribose-5-phosphate isomerase, C-terminal YPK_2204 IPR036569 YPK_2204 YPK_2205 IPR006597 Sel1-like YPK_2205 IPR025115 Domain of unknown function DUF4034 YPK_2207 IPR006597 Sel1-like YPK_2207 IPR011652 MORN variant YPK_2207 IPR011990 Tetratricopeptide-like helical domain YPK_2208 IPR011990 Tetratricopeptide-like helical domain YPK_2210 IPR007235 Glycosyl transferase, family 28, C-terminal YPK_2212 IPR025993 Ceramide glucosyltransferase YPK_2212 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2213 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_2213 IPR036291 YPK_2213 YPK_2214 IPR012685 Conserved hypothetical protein CHP02304, F390 synthetase-related YPK_2215 IPR001279 Beta-lactamase-like YPK_2215 IPR036866 YPK_2215 YPK_2216 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_2216 IPR036291 YPK_2216 YPK_2217 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal YPK_2217 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPK_2217 IPR016039 Thiolase-like YPK_2218 IPR005801 ADC synthase YPK_2218 IPR015890 Chorismate binding, C-terminal YPK_2219 IPR010282 Uncharacterised protein family HutD/Ves YPK_2219 IPR011051 RmlC-like cupin domain YPK_2219 IPR014710 RmlC-like jelly roll fold YPK_2220 IPR006680 Amidohydrolase 1 YPK_2220 IPR010252 Formiminoglutamate deiminase YPK_2220 IPR011059 Metal-dependent hydrolase, composite domain YPK_2220 IPR032466 YPK_2220 YPK_2221 IPR000524 Transcription regulator HTH, GntR YPK_2221 IPR010248 Histidine utilization repressor YPK_2221 IPR011663 UbiC transcription regulator-associated YPK_2221 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPK_2221 IPR036388 YPK_2221 YPK_2221 IPR036390 YPK_2221 YPK_2222 IPR005920 Imidazolonepropionase YPK_2222 IPR006680 Amidohydrolase 1 YPK_2222 IPR011059 Metal-dependent hydrolase, composite domain YPK_2222 IPR032466 YPK_2222 YPK_2223 IPR007709 N-formylglutamate amidohydrolase YPK_2223 IPR010247 N-formylglutamate deformylase YPK_2224 IPR001702 Porin, Gram-negative type YPK_2224 IPR001897 Porin, gammaproteobacterial YPK_2224 IPR023614 Porin domain YPK_2225 IPR007036 Succinylglutamate desuccinylase/aspartoacylase YPK_2225 IPR016681 Succinylglutamate desuccinylase YPK_2226 IPR007079 Succinylarginine dihydrolase YPK_2226 IPR037031 YPK_2226 YPK_2227 IPR015590 Aldehyde dehydrogenase domain YPK_2227 IPR016160 Aldehyde dehydrogenase, cysteine active site YPK_2227 IPR016161 Aldehyde/histidinol dehydrogenase YPK_2227 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_2227 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_2227 IPR017649 Succinylglutamic semialdehyde dehydrogenase YPK_2227 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPK_2228 IPR007041 Arginine N-succinyltransferase Ast/AOST YPK_2228 IPR016181 Acyl-CoA N-acyltransferase YPK_2228 IPR017650 Arginine N-succinyltransferase AstA YPK_2229 IPR004636 Acetylornithine/Succinylornithine transaminase family YPK_2229 IPR005814 Aminotransferase class-III YPK_2229 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2229 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2229 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2229 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria YPK_2229 IPR026330 Succinylornithine transaminase YPK_2231 IPR004839 Aminotransferase, class I/classII YPK_2231 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2231 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2231 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2232 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_2232 IPR003660 HAMP linker domain YPK_2232 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YPK_2232 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing YPK_2232 IPR029095 NarX-like, N-terminal YPK_2232 IPR036890 YPK_2232 YPK_2233 IPR004713 Calcium/proton exchanger YPK_2233 IPR004837 Sodium/calcium exchanger membrane region YPK_2234 IPR002686 Transposase IS200-like YPK_2234 IPR036515 YPK_2234 YPK_2235 IPR003714 PhoH-like protein YPK_2235 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2237 IPR000182 GNAT domain YPK_2237 IPR016181 Acyl-CoA N-acyltransferase YPK_2238 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD YPK_2239 IPR001173 Glycosyltransferase 2-like YPK_2239 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA YPK_2239 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2240 IPR002509 Polysaccharide deacetylase YPK_2240 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPK_2240 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB YPK_2240 IPR032772 YPK_2240 YPK_2241 IPR011990 Tetratricopeptide-like helical domain YPK_2241 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA YPK_2242 IPR000587 Creatinase, N-terminal YPK_2242 IPR000994 Peptidase M24, structural domain YPK_2242 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_2242 IPR036005 YPK_2242 YPK_2243 IPR004537 Tellurite resistance methyltransferase, TehB YPK_2243 IPR014431 Tellurite resistance methyltransferase, TehB type-2 YPK_2243 IPR014710 RmlC-like jelly roll fold YPK_2243 IPR015392 Domain of unknown function DUF1971 YPK_2243 IPR015985 Tellurite resistance methyltransferase TehB-like domain YPK_2243 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2244 IPR009056 Cytochrome c-like domain YPK_2244 IPR036909 YPK_2244 YPK_2245 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPK_2245 IPR036249 YPK_2245 YPK_2246 IPR003439 ABC transporter-like YPK_2246 IPR003593 AAA+ ATPase domain YPK_2246 IPR017871 ABC transporter, conserved site YPK_2246 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2247 IPR003838 Permease FtsX-like YPK_2247 IPR025857 MacB-like periplasmic core domain YPK_2248 IPR003838 Permease FtsX-like YPK_2249 IPR007029 YHS domain YPK_2249 IPR018758 Domain of unknown function DUF2318, membrane YPK_2251 IPR018470 Periplasmic metal-binding protein Tp34-type YPK_2251 IPR038482 YPK_2251 YPK_2252 IPR004923 Iron permease FTR1/Fip1/EfeU YPK_2253 IPR011701 Major facilitator superfamily YPK_2253 IPR036259 YPK_2253 YPK_2254 IPR012338 Beta-lactamase/transpeptidase-like YPK_2254 IPR015868 Glutaminase YPK_2255 IPR001034 HTH DeoR N-terminal domain YPK_2255 IPR014036 DeoR C-terminal sensor domain YPK_2255 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPK_2255 IPR036388 YPK_2255 YPK_2255 IPR036390 YPK_2255 YPK_2255 IPR037171 YPK_2255 YPK_2256 IPR002293 Amino acid/polyamine transporter I YPK_2256 IPR004840 Amino acid permease, conserved site YPK_2256 IPR004841 Amino acid permease/ SLC12A domain YPK_2257 IPR004839 Aminotransferase, class I/classII YPK_2257 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2257 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2257 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2258 IPR003667 Electron transport complex, Rnf/Nqr YPK_2258 IPR010967 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YPK_2259 IPR000847 Transcription regulator HTH, LysR YPK_2259 IPR005119 LysR, substrate-binding YPK_2259 IPR036388 YPK_2259 YPK_2259 IPR036390 YPK_2259 YPK_2260 IPR006680 Amidohydrolase 1 YPK_2260 IPR032466 YPK_2260 YPK_2264 IPR013783 Immunoglobulin-like fold YPK_2265 IPR000847 Transcription regulator HTH, LysR YPK_2265 IPR005119 LysR, substrate-binding YPK_2265 IPR036388 YPK_2265 YPK_2265 IPR036390 YPK_2265 YPK_2266 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPK_2266 IPR011206 Citrate lyase beta subunit-like YPK_2266 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_2267 IPR002539 MaoC-like domain YPK_2267 IPR029069 HotDog domain YPK_2268 IPR003702 Acetyl-CoA hydrolase/transferase YPK_2268 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain YPK_2268 IPR037171 YPK_2268 YPK_2268 IPR038460 YPK_2268 YPK_2269 IPR000792 Transcription regulator LuxR, C-terminal YPK_2269 IPR001789 Signal transduction response regulator, receiver domain YPK_2269 IPR011006 CheY-like superfamily YPK_2269 IPR016032 Signal transduction response regulator, C-terminal effector YPK_2272 IPR000259 Fimbrial-type adhesion domain YPK_2272 IPR008966 Adhesion domain YPK_2272 IPR036937 YPK_2272 YPK_2273 IPR001829 Pili assembly chaperone, bacterial YPK_2273 IPR008962 PapD-like YPK_2273 IPR013783 Immunoglobulin-like fold YPK_2273 IPR016147 PapD, N-terminal, bacterial YPK_2273 IPR016148 Pili assembly chaperone, C-terminal domain YPK_2273 IPR036316 YPK_2273 YPK_2274 IPR000015 Outer membrane usher protein YPK_2274 IPR025885 PapC, N-terminal domain YPK_2274 IPR025949 PapC-like, C-terminal domain YPK_2274 IPR037224 YPK_2274 YPK_2275 IPR000259 Fimbrial-type adhesion domain YPK_2275 IPR008966 Adhesion domain YPK_2275 IPR011228 Uncharacterised conserved protein UCP029766 YPK_2276 IPR001829 Pili assembly chaperone, bacterial YPK_2276 IPR008962 PapD-like YPK_2276 IPR013783 Immunoglobulin-like fold YPK_2276 IPR016147 PapD, N-terminal, bacterial YPK_2276 IPR016148 Pili assembly chaperone, C-terminal domain YPK_2276 IPR018046 Pili assembly chaperone, conserved site YPK_2276 IPR036316 YPK_2276 YPK_2277 IPR003439 ABC transporter-like YPK_2277 IPR003593 AAA+ ATPase domain YPK_2277 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2277 IPR013611 Transport-associated OB, type 2 YPK_2277 IPR017871 ABC transporter, conserved site YPK_2277 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2278 IPR000515 MetI-like domain YPK_2278 IPR035906 YPK_2278 YPK_2279 IPR000515 MetI-like domain YPK_2279 IPR035906 YPK_2279 YPK_2280 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_2281 IPR000683 Oxidoreductase, N-terminal YPK_2281 IPR036291 YPK_2281 YPK_2284 IPR000524 Transcription regulator HTH, GntR YPK_2284 IPR011663 UbiC transcription regulator-associated YPK_2284 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPK_2284 IPR036388 YPK_2284 YPK_2284 IPR036390 YPK_2284 YPK_2287 IPR001584 Integrase, catalytic core YPK_2291 IPR001207 Transposase, mutator type YPK_2292 IPR001207 Transposase, mutator type YPK_2293 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain YPK_2293 IPR035897 YPK_2293 YPK_2294 IPR025528 Protein of unknown function DUF4415 YPK_2295 IPR007460 Burkholderia phage Bups phi1, Orf7.3 YPK_2295 IPR038573 YPK_2295 YPK_2296 IPR006531 Gp5 N-terminal YPK_2296 IPR013046 Bacteriophage Mu/P2, baseplate assembly YPK_2296 IPR037026 YPK_2296 YPK_2297 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_2298 IPR021225 Protein of unknown function DUF2778 YPK_2300 IPR020287 Tail sheath protein, C-terminal domain YPK_2300 IPR035089 YPK_2300 YPK_2301 IPR006498 Bacteriophage P2, FII, major tail tube protein YPK_2302 IPR019289 Bacteriophage tail protein Gp41, putative YPK_2303 IPR010090 Phage tail tape measure protein YPK_2304 IPR009734 Myoviridae, GpU YPK_2304 IPR016912 Bacteriophage P2, GpU YPK_2306 IPR007684 Zinc finger, Ogr/Delta-type YPK_2307 IPR002104 Integrase, catalytic YPK_2307 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_2307 IPR013762 Integrase-like, catalytic core YPK_2310 IPR001387 Cro/C1-type helix-turn-helix domain YPK_2310 IPR010982 Lambda repressor-like, DNA-binding domain YPK_2319 IPR012337 Ribonuclease H-like domain YPK_2319 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_2319 IPR036397 YPK_2319 YPK_2320 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_2320 IPR012263 Adenine modification methylase, M.EcoRV-type YPK_2320 IPR012327 D12 class N6 adenine-specific DNA methyltransferase YPK_2320 IPR023095 Adenine-specific methyltransferase, domain 2 YPK_2320 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2321 IPR001525 C-5 cytosine methyltransferase YPK_2321 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2322 IPR008766 Replication gene A protein YPK_2325 IPR006430 Phage portal protein, PBSX family YPK_2325 IPR006944 Bacteriophage/Gene transfer agent portal protein YPK_2325 IPR030935 YPK_2325 YPK_2326 IPR004921 Terminase, large subunit YPK_2327 IPR004921 Terminase, large subunit YPK_2327 IPR010332 ATPase terminase subunit, putative YPK_2327 IPR035421 YPK_2327 YPK_2328 IPR009228 Capsid scaffolding protein GpO YPK_2329 IPR006441 Bacteriophage P2, GpN, major capsid YPK_2330 IPR010270 Bacteriophage P2, GpM YPK_2331 IPR009225 Bacteriophage head completion protein GpL YPK_2332 IPR008861 Bacteriophage P2, GpX YPK_2332 IPR036779 YPK_2332 YPK_2333 IPR006481 Bacteriophage lambda, GpS, holin YPK_2334 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPK_2334 IPR039561 YPK_2334 YPK_2335 IPR020000 Bacteriophage P2, LysB YPK_2336 IPR009678 Bacteriophage tail completion protein R YPK_2337 IPR006522 Phage virion morphogensis protein YPK_2341 IPR006531 Gp5 N-terminal YPK_2341 IPR013046 Bacteriophage Mu/P2, baseplate assembly YPK_2341 IPR037026 YPK_2341 YPK_2342 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_2343 IPR006949 Baseplate assembly protein J-like, predicted YPK_2343 IPR014507 Baseplate assembly protein J, predicted YPK_2344 IPR006521 Tail protein I YPK_2345 IPR022225 Phage tail fibre protein YPK_2347 IPR020287 Tail sheath protein, C-terminal domain YPK_2347 IPR035089 YPK_2347 YPK_2348 IPR006498 Bacteriophage P2, FII, major tail tube protein YPK_2349 IPR019289 Bacteriophage tail protein Gp41, putative YPK_2350 IPR010090 Phage tail tape measure protein YPK_2351 IPR009734 Myoviridae, GpU YPK_2351 IPR016912 Bacteriophage P2, GpU YPK_2353 IPR007684 Zinc finger, Ogr/Delta-type YPK_2354 IPR000462 CDP-alcohol phosphatidyltransferase YPK_2354 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YPK_2354 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial YPK_2355 IPR000305 GIY-YIG nuclease superfamily YPK_2355 IPR001162 UvrC family homology region YPK_2355 IPR001943 UVR domain YPK_2355 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YPK_2355 IPR004791 UvrABC system, subunit C YPK_2355 IPR010994 RuvA domain 2-like YPK_2355 IPR035901 YPK_2355 YPK_2355 IPR036876 YPK_2355 YPK_2355 IPR038476 YPK_2355 YPK_2356 IPR000792 Transcription regulator LuxR, C-terminal YPK_2356 IPR001789 Signal transduction response regulator, receiver domain YPK_2356 IPR011006 CheY-like superfamily YPK_2356 IPR016032 Signal transduction response regulator, C-terminal effector YPK_2358 IPR009707 GlpM YPK_2360 IPR000758 Virulence-related outer membrane protein YPK_2360 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_2360 IPR027385 Outer membrane protein beta-barrel YPK_2361 IPR002293 Amino acid/polyamine transporter I YPK_2361 IPR004840 Amino acid permease, conserved site YPK_2361 IPR004841 Amino acid permease/ SLC12A domain YPK_2362 IPR006652 Kelch repeat type 1 YPK_2362 IPR015915 Kelch-type beta propeller YPK_2362 IPR019936 Mutatrotase, YjhT-like YPK_2363 IPR005025 NADPH-dependent FMN reductase-like YPK_2363 IPR010089 Flavoprotein WrbA YPK_2363 IPR029039 Flavoprotein-like YPK_2363 IPR037513 YPK_2363 YPK_2364 IPR006313 Deferrochelatase/peroxidase EfeB YPK_2364 IPR006314 Dyp-type peroxidase YPK_2364 IPR011008 Dimeric alpha-beta barrel YPK_2365 IPR008972 Cupredoxin YPK_2365 IPR018976 YPK_2365 YPK_2365 IPR028096 EfeO-type cupredoxin-like domain YPK_2365 IPR038352 YPK_2365 YPK_2366 IPR004923 Iron permease FTR1/Fip1/EfeU YPK_2366 IPR005217 Iron permease FTR1-like YPK_2367 IPR001734 Sodium/solute symporter YPK_2367 IPR011851 Sodium/proline symporter YPK_2367 IPR018212 Sodium/solute symporter, conserved site YPK_2367 IPR038377 YPK_2367 YPK_2369 IPR002872 Proline dehydrogenase domain YPK_2369 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 YPK_2369 IPR010985 Ribbon-helix-helix YPK_2369 IPR013321 Arc-type ribbon-helix-helix YPK_2369 IPR015590 Aldehyde dehydrogenase domain YPK_2369 IPR016160 Aldehyde dehydrogenase, cysteine active site YPK_2369 IPR016161 Aldehyde/histidinol dehydrogenase YPK_2369 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_2369 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_2369 IPR024082 Proline dehydrogenase PutA, domain II YPK_2369 IPR024089 Proline dehydrogenase PutA, domain I/II YPK_2369 IPR024090 Proline dehydrogenase PutA, domain I YPK_2369 IPR025703 Bifunctional protein PutA YPK_2369 IPR029041 FAD-linked oxidoreductase-like YPK_2369 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPK_2372 IPR036388 YPK_2372 YPK_2372 IPR036390 YPK_2372 YPK_2374 IPR003439 ABC transporter-like YPK_2374 IPR003593 AAA+ ATPase domain YPK_2374 IPR017871 ABC transporter, conserved site YPK_2374 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2374 IPR030679 YPK_2374 YPK_2375 IPR000515 MetI-like domain YPK_2375 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_2375 IPR035906 YPK_2375 YPK_2376 IPR001320 Ionotropic glutamate receptor YPK_2376 IPR001638 Extracellular solute-binding protein, family 3 YPK_2376 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPK_2377 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_2377 IPR005966 D-cysteine desulfhydrase YPK_2377 IPR023702 D-cysteine desulphhydrase, bacterial YPK_2377 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YPK_2377 IPR036052 YPK_2377 YPK_2378 IPR004107 Integrase, SAM-like, N-terminal YPK_2378 IPR022523 Flagellar regulator, FliZ YPK_2380 IPR000943 RNA polymerase sigma-70 YPK_2380 IPR007624 RNA polymerase sigma-70 region 3 YPK_2380 IPR007627 RNA polymerase sigma-70 region 2 YPK_2380 IPR007630 RNA polymerase sigma-70 region 4 YPK_2380 IPR012845 RNA polymerase sigma factor, FliA/WhiG YPK_2380 IPR013324 RNA polymerase sigma factor, region 3/4 YPK_2380 IPR013325 RNA polymerase sigma factor, region 2 YPK_2380 IPR014284 RNA polymerase sigma-70 like domain YPK_2380 IPR028617 RNA polymerase sigma factor FliA YPK_2381 IPR001029 Flagellin, D0/D1 domain YPK_2381 IPR001492 Flagellin YPK_2382 IPR003481 Flagellar hook-associated protein 2, N-terminal YPK_2382 IPR010809 Flagellar hook-associated 2, C-terminal YPK_2382 IPR010810 Flagellin hook, IN motif YPK_2383 IPR003713 Flagellar protein FliS YPK_2383 IPR036584 YPK_2383 YPK_2384 IPR008622 Flagellar protein FliT YPK_2385 IPR009057 Homeodomain-like YPK_2385 IPR018060 DNA binding HTH domain, AraC-type YPK_2385 IPR020449 Transcription regulator HTH, AraC- type YPK_2385 IPR037923 YPK_2385 YPK_2386 IPR003607 HD/PDEase domain YPK_2386 IPR029016 GAF domain-like YPK_2387 IPR003265 HhH-GPD domain YPK_2387 IPR011257 DNA glycosylase YPK_2388 IPR003812 Fido domain YPK_2388 IPR006440 Death on curing protein YPK_2390 IPR001624 Flagellar hook-basal body complex protein FliE YPK_2391 IPR000067 Flagellar M-ring protein FliF YPK_2391 IPR006182 Secretory protein YscJ/FliF YPK_2391 IPR013556 Flagellar M-ring C-terminal YPK_2392 IPR000090 Flagellar motor switch protein FliG YPK_2392 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPK_2392 IPR023087 YPK_2392 YPK_2392 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPK_2392 IPR032779 YPK_2392 YPK_2393 IPR000563 Flagellar assembly protein FliH YPK_2393 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPK_2394 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPK_2394 IPR003593 AAA+ ATPase domain YPK_2394 IPR005714 ATPase, type III secretion system, FliI/YscN YPK_2394 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPK_2394 IPR020005 Flagellar export ATPase FliI, clade 1 YPK_2394 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2395 IPR012823 Flagellar export FliJ YPK_2395 IPR018006 Flagellar FliJ, proteobacteria YPK_2396 IPR001635 Flagellar hook-length control protein FliK YPK_2396 IPR021136 Flagellar hook-length control protein-like, C-terminal YPK_2396 IPR038610 YPK_2396 YPK_2398 IPR005503 Flagellar basal body-associated protein FliL YPK_2399 IPR001543 Surface presentation of antigen (SpoA) YPK_2399 IPR001689 Flagellar motor switch protein FliM YPK_2399 IPR028976 CheC-like domain YPK_2399 IPR036429 YPK_2399 YPK_2400 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb YPK_2400 IPR001543 Surface presentation of antigen (SpoA) YPK_2400 IPR012826 Flagellar motor switch FliN YPK_2400 IPR031576 YPK_2400 YPK_2400 IPR036429 YPK_2400 YPK_2401 IPR022781 Flagellar biosynthesis protein, FliO YPK_2402 IPR005837 Flagellar transport protein FliP YPK_2402 IPR005838 Type III secretion system inner membrane P protein YPK_2403 IPR002191 Bacterial export protein family 3 YPK_2403 IPR006305 Flagellar biosynthesis protein FliQ YPK_2404 IPR002010 Type III secretion system inner membrane R protein YPK_2404 IPR006303 Flagellar biosynthesis protein FliR YPK_2407 IPR011611 Carbohydrate kinase PfkB YPK_2407 IPR029056 Ribokinase-like YPK_2408 IPR001851 ABC transporter, permease YPK_2409 IPR003439 ABC transporter-like YPK_2409 IPR003593 AAA+ ATPase domain YPK_2409 IPR017871 ABC transporter, conserved site YPK_2409 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2410 IPR025997 Periplasmic binding protein domain YPK_2410 IPR028082 Periplasmic binding protein-like I YPK_2411 IPR001851 ABC transporter, permease YPK_2413 IPR001303 Class II aldolase/adducin N-terminal YPK_2413 IPR002347 Glucose/ribitol dehydrogenase YPK_2413 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_2413 IPR036291 YPK_2413 YPK_2413 IPR036409 YPK_2413 YPK_2414 IPR007324 Sugar-binding domain, putative YPK_2414 IPR013324 RNA polymerase sigma factor, region 3/4 YPK_2414 IPR037171 YPK_2414 YPK_2415 IPR001029 Flagellin, D0/D1 domain YPK_2415 IPR013384 Flagellar hook-associated protein 3 YPK_2416 IPR001444 Flagellar basal body rod protein, N-terminal YPK_2416 IPR002371 Flagellar hook-associated protein, FlgK YPK_2416 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_2417 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain YPK_2417 IPR013377 Flagellar rod assembly protein/muramidase FlgJ YPK_2417 IPR019301 Flagellar protein FlgJ, N-terminal YPK_2418 IPR001782 Flagellar P-ring protein YPK_2419 IPR000527 Flagellar L-ring protein YPK_2420 IPR001444 Flagellar basal body rod protein, N-terminal YPK_2420 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_2420 IPR012834 Flagellar basal-body rod FlgG YPK_2420 IPR019776 Flagellar basal body rod protein, conserved site YPK_2420 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPK_2420 IPR037925 YPK_2420 YPK_2421 IPR001444 Flagellar basal body rod protein, N-terminal YPK_2421 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_2421 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPK_2421 IPR037925 YPK_2421 YPK_2422 IPR001444 Flagellar basal body rod protein, N-terminal YPK_2422 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_2422 IPR011491 Flagellar basal body FlaE YPK_2422 IPR019776 Flagellar basal body rod protein, conserved site YPK_2422 IPR020013 Fagellar hook-basal body protein, FlgE/F/G YPK_2422 IPR037058 YPK_2422 YPK_2422 IPR037925 YPK_2422 YPK_2423 IPR005648 Flagellar hook capping protein YPK_2423 IPR025963 FlgD Tudor-like domain YPK_2423 IPR025965 FlgD Ig-like domain YPK_2424 IPR001444 Flagellar basal body rod protein, N-terminal YPK_2424 IPR006299 Flagellar basal-body rod protein FlgC YPK_2424 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_2424 IPR019776 Flagellar basal body rod protein, conserved site YPK_2425 IPR001444 Flagellar basal body rod protein, N-terminal YPK_2425 IPR006300 Flagellar basal-body rod protein FlgB YPK_2425 IPR019776 Flagellar basal body rod protein, conserved site YPK_2426 IPR013974 SAF domain YPK_2426 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPK_2427 IPR007412 Anti-sigma-28 factor, FlgM YPK_2427 IPR031316 YPK_2427 YPK_2427 IPR035890 YPK_2427 YPK_2428 IPR007809 FlgN-like domain YPK_2428 IPR036679 YPK_2428 YPK_2429 IPR003344 Bacterial Ig-like, group 1 YPK_2429 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPK_2429 IPR008964 Invasin/intimin cell-adhesion YPK_2429 IPR013117 Intimin, C-terminal YPK_2429 IPR013783 Immunoglobulin-like fold YPK_2429 IPR015217 Invasin, domain 3 YPK_2429 IPR016186 C-type lectin-like YPK_2429 IPR016187 C-type lectin fold YPK_2429 IPR024519 Domain of unknown function DUF3442, intimin/invasin YPK_2429 IPR038177 YPK_2429 YPK_2430 IPR009420 Flagellar FlhE YPK_2431 IPR001712 Type III secretion system FHIPEP YPK_2431 IPR006301 Flagellar biosynthesis protein FlhA YPK_2431 IPR025505 FHIPEP conserved site YPK_2432 IPR006135 Type III secretion system substrate exporter YPK_2432 IPR006136 Type III exporter system, flagellar biosynthetic protein FlhB YPK_2432 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_2434 IPR010862 Protein of unknown function DUF1493 YPK_2435 IPR019648 Protein of unknown function DUF2511 YPK_2436 IPR008457 Copper resistance D YPK_2437 IPR007348 CopC domain YPK_2437 IPR014756 Immunoglobulin E-set YPK_2438 IPR008331 Ferritin/DPS protein domain YPK_2438 IPR009078 Ferritin-like superfamily YPK_2438 IPR012347 Ferritin-related YPK_2439 IPR009052 DNA polymerase III-theta, bacterial YPK_2439 IPR036745 YPK_2439 YPK_2440 IPR000073 Alpha/beta hydrolase fold-1 YPK_2440 IPR002410 Peptidase S33 YPK_2440 IPR005944 Proline iminopeptidase YPK_2440 IPR029058 Alpha/Beta hydrolase fold YPK_2442 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPK_2442 IPR002470 Peptidase S9A, prolyl oligopeptidase YPK_2442 IPR023302 Peptidase S9A, N-terminal domain YPK_2442 IPR029058 Alpha/Beta hydrolase fold YPK_2443 IPR020236 Uncharacterised protein family YebF YPK_2443 IPR025603 YebF/Colicin-M immunity protein YPK_2443 IPR038703 YPK_2443 YPK_2444 IPR007374 ASCH domain YPK_2444 IPR008314 Uncharacterised conserved protein UCP029143 YPK_2444 IPR015947 PUA-like domain YPK_2445 IPR009813 Uncharacterised protein family YebG YPK_2445 IPR038627 YPK_2445 YPK_2446 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPK_2446 IPR001650 Helicase, C-terminal YPK_2446 IPR005580 DbpA, RNA-binding YPK_2446 IPR011545 DEAD/DEAH box helicase domain YPK_2446 IPR012677 Nucleotide-binding, alpha-beta plait YPK_2446 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_2446 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2446 IPR028619 ATP-dependent RNA helicase DbpA YPK_2447 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPK_2447 IPR005862 Phosphoribosylglycinamide formyltransferase 2 YPK_2447 IPR011054 Rudiment single hybrid motif YPK_2447 IPR013815 ATP-grasp fold, subdomain 1 YPK_2447 IPR016185 Pre-ATP-grasp domain YPK_2448 IPR005371 Uncharacterised protein family UPF0181 YPK_2449 IPR005801 ADC synthase YPK_2449 IPR005802 Para-aminobenzoate synthase, component I YPK_2449 IPR006805 Anthranilate synthase component I, N-terminal YPK_2449 IPR015890 Chorismate binding, C-terminal YPK_2449 IPR019999 Anthranilate synthase component I - like YPK_2450 IPR000059 NUDIX hydrolase, NudL, conserved site YPK_2450 IPR000086 NUDIX hydrolase domain YPK_2450 IPR015797 NUDIX hydrolase domain-like YPK_2450 IPR023735 Uncharacterised nudix hydrolase NudL YPK_2451 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form YPK_2451 IPR005130 Serine dehydratase-like, alpha subunit YPK_2451 IPR005131 Serine dehydratase beta chain YPK_2451 IPR029009 Allosteric substrate binding domain YPK_2452 IPR002563 Flavin reductase-like, FMN-binding YPK_2452 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component YPK_2452 IPR012349 FMN-binding split barrel YPK_2453 IPR004925 HpaB/PvcC/4-BUDH YPK_2453 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain YPK_2453 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria YPK_2453 IPR024674 HpaB/PvcC/4-BUDH N-terminal YPK_2453 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YPK_2453 IPR024719 HpaB/PvcC/4-BUDH C-terminal YPK_2453 IPR036250 YPK_2453 YPK_2454 IPR011701 Major facilitator superfamily YPK_2454 IPR012707 4-hydroxyphenylacetate permease YPK_2454 IPR024671 Autophagy-related protein 22-like YPK_2454 IPR036259 YPK_2454 YPK_2455 IPR005000 HpcH/HpaI aldolase/citrate lyase domain YPK_2455 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YPK_2455 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_2456 IPR012690 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YPK_2456 IPR036663 YPK_2456 YPK_2457 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase YPK_2457 IPR014347 Tautomerase/MIF superfamily YPK_2458 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YPK_2458 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD-Fe YPK_2459 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YPK_2459 IPR015590 Aldehyde dehydrogenase domain YPK_2459 IPR016160 Aldehyde dehydrogenase, cysteine active site YPK_2459 IPR016161 Aldehyde/histidinol dehydrogenase YPK_2459 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_2459 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_2459 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPK_2460 IPR011234 Fumarylacetoacetase, C-terminal-related YPK_2460 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YPK_2460 IPR036663 YPK_2460 YPK_2461 IPR011234 Fumarylacetoacetase, C-terminal-related YPK_2461 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YPK_2461 IPR036663 YPK_2461 YPK_2462 IPR000835 MarR-type HTH domain YPK_2462 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR YPK_2462 IPR036388 YPK_2462 YPK_2462 IPR036390 YPK_2462 YPK_2463 IPR000644 CBS domain YPK_2463 IPR005170 Transporter-associated domain YPK_2463 IPR005496 Integral membrane protein TerC YPK_2463 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_2463 IPR036318 YPK_2463 YPK_2464 IPR004701 Phosphotransferase system, mannose-type IIA component YPK_2464 IPR004720 Phosphotransferase system, sorbose subfamily IIB component YPK_2464 IPR013789 Phosphotransferase system, mannose family IIA component YPK_2464 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup YPK_2464 IPR036662 YPK_2464 YPK_2464 IPR036667 YPK_2464 YPK_2465 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit YPK_2466 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component YPK_2467 IPR009328 Protein of unknown function DUF986 YPK_2468 IPR003810 Domain of unknown function DUF204 YPK_2468 IPR022929 Putative manganese efflux pump MntP YPK_2469 IPR000531 TonB-dependent receptor, beta-barrel YPK_2469 IPR010105 TonB-dependent siderophore receptor YPK_2469 IPR010917 TonB-dependent receptor, conserved site YPK_2469 IPR012910 TonB-dependent receptor, plug YPK_2469 IPR036942 YPK_2469 YPK_2469 IPR037066 YPK_2469 YPK_2470 IPR000014 PAS domain YPK_2470 IPR000160 GGDEF domain YPK_2470 IPR001610 PAC motif YPK_2470 IPR013767 PAS fold YPK_2470 IPR029787 Nucleotide cyclase YPK_2470 IPR035965 YPK_2470 YPK_2472 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted YPK_2472 IPR025714 Methyltransferase domain YPK_2472 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2473 IPR003730 Multi-copper polyphenol oxidoreductase, laccase YPK_2473 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPK_2473 IPR038371 YPK_2473 YPK_2474 IPR002059 Cold-shock protein, DNA-binding YPK_2474 IPR011129 Cold shock protein YPK_2474 IPR012156 Cold shock, CspA YPK_2474 IPR012340 Nucleic acid-binding, OB-fold YPK_2474 IPR019844 Cold-shock conserved site YPK_2475 IPR019672 Protein of unknown function DUF2627 YPK_2476 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPK_2476 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_2477 IPR002293 Amino acid/polyamine transporter I YPK_2477 IPR004840 Amino acid permease, conserved site YPK_2477 IPR004841 Amino acid permease/ SLC12A domain YPK_2478 IPR025135 Protein of unknown function DUF4060 YPK_2479 IPR019701 Bacteriophage P22, NinX YPK_2480 IPR025594 YebO-like protein YPK_2481 IPR025611 YobH-like protein YPK_2482 IPR020262 Uncharacterised protein family YecJ YPK_2484 IPR009057 Homeodomain-like YPK_2484 IPR018060 DNA binding HTH domain, AraC-type YPK_2484 IPR018062 HTH domain AraC-type, conserved site YPK_2484 IPR020449 Transcription regulator HTH, AraC- type YPK_2487 IPR003439 ABC transporter-like YPK_2487 IPR003593 AAA+ ATPase domain YPK_2487 IPR011527 ABC transporter type 1, transmembrane domain YPK_2487 IPR017871 ABC transporter, conserved site YPK_2487 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2487 IPR036640 YPK_2487 YPK_2488 IPR000687 RIO kinase YPK_2488 IPR011009 Protein kinase-like domain YPK_2488 IPR018935 RIO kinase, conserved site YPK_2489 IPR005545 YCII-related YPK_2489 IPR011008 Dimeric alpha-beta barrel YPK_2490 IPR010384 MtfA family YPK_2490 IPR024079 Metallopeptidase, catalytic domain YPK_2491 IPR000843 Transcription regulator HTH, LacI YPK_2491 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_2491 IPR010982 Lambda repressor-like, DNA-binding domain YPK_2491 IPR028082 Periplasmic binding protein-like I YPK_2492 IPR000576 LacY/RafB permease family YPK_2492 IPR036259 YPK_2492 YPK_2493 IPR000111 Glycoside hydrolase, clan GH-D YPK_2493 IPR002252 Glycoside hydrolase, family 36 YPK_2493 IPR013785 Aldolase-type TIM barrel YPK_2493 IPR017853 Glycoside hydrolase, superfamily YPK_2493 IPR031704 YPK_2493 YPK_2493 IPR038417 YPK_2493 YPK_2495 IPR003542 Enterobactin synthetase-like, component D YPK_2495 IPR008278 4'-phosphopantetheinyl transferase superfamily YPK_2495 IPR037143 YPK_2495 YPK_2496 IPR004682 TRAP dicarboxylate transporter YPK_2496 IPR018389 Bacterial extracellular solute-binding protein, family 7 YPK_2496 IPR038404 YPK_2496 YPK_2497 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component YPK_2498 IPR004681 TRAP transporter permease protein YPK_2498 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YPK_2499 IPR000792 Transcription regulator LuxR, C-terminal YPK_2499 IPR001789 Signal transduction response regulator, receiver domain YPK_2499 IPR011006 CheY-like superfamily YPK_2499 IPR016032 Signal transduction response regulator, C-terminal effector YPK_2500 IPR018636 Protein of unknown function DUF2058 YPK_2502 IPR002509 Polysaccharide deacetylase YPK_2502 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPK_2503 IPR005829 Sugar transporter, conserved site YPK_2503 IPR011701 Major facilitator superfamily YPK_2503 IPR036259 YPK_2503 YPK_2504 IPR002528 Multi antimicrobial extrusion protein YPK_2505 IPR001518 Argininosuccinate synthase YPK_2505 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2505 IPR018223 Argininosuccinate synthase, conserved site YPK_2505 IPR023437 Argininosuccinate synthase, type 2 subfamily YPK_2505 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail YPK_2505 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body YPK_2506 IPR000262 FMN-dependent dehydrogenase YPK_2506 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site YPK_2506 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent YPK_2506 IPR013785 Aldolase-type TIM barrel YPK_2506 IPR020920 L-lactate dehydrogenase, bacterial YPK_2508 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPK_2508 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPK_2508 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site YPK_2508 IPR029017 Enolase N-terminal domain-like YPK_2508 IPR029065 Enolase C-terminal domain-like YPK_2508 IPR036849 YPK_2508 YPK_2509 IPR011234 Fumarylacetoacetase, C-terminal-related YPK_2509 IPR036663 YPK_2509 YPK_2510 IPR002347 Glucose/ribitol dehydrogenase YPK_2510 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_2510 IPR036291 YPK_2510 YPK_2511 IPR007263 Protein of unknown function DUF393 YPK_2512 IPR011701 Major facilitator superfamily YPK_2512 IPR036259 YPK_2512 YPK_2513 IPR003344 Bacterial Ig-like, group 1 YPK_2513 IPR003535 Intimin/invasin bacterial adhesion mediator protein YPK_2513 IPR008964 Invasin/intimin cell-adhesion YPK_2513 IPR013783 Immunoglobulin-like fold YPK_2513 IPR015217 Invasin, domain 3 YPK_2513 IPR024519 Domain of unknown function DUF3442, intimin/invasin YPK_2513 IPR038177 YPK_2513 YPK_2514 IPR007458 Protein of unknown function DUF496 YPK_2515 IPR013120 Male sterility, NAD-binding YPK_2515 IPR036291 YPK_2515 YPK_2516 IPR012337 Ribonuclease H-like domain YPK_2516 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_2516 IPR013620 Exonuclease C-terminal YPK_2516 IPR023607 Exodeoxyribonuclease I YPK_2516 IPR036397 YPK_2516 YPK_2516 IPR038649 YPK_2516 YPK_2517 IPR002293 Amino acid/polyamine transporter I YPK_2519 IPR001670 Alcohol dehydrogenase, iron-type YPK_2519 IPR016205 Glycerol dehydrogenase YPK_2519 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPK_2520 IPR003439 ABC transporter-like YPK_2520 IPR003593 AAA+ ATPase domain YPK_2520 IPR017871 ABC transporter, conserved site YPK_2520 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2521 IPR001851 ABC transporter, permease YPK_2523 IPR032032 YPK_2523 YPK_2523 IPR038314 YPK_2523 YPK_2524 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_2524 IPR036291 YPK_2524 YPK_2525 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPK_2525 IPR013115 Histidine biosynthesis HisG, C-terminal YPK_2525 IPR013820 ATP phosphoribosyltransferase, catalytic domain YPK_2525 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPK_2525 IPR018198 ATP phosphoribosyltransferase, conserved site YPK_2525 IPR020621 ATP phosphoribosyltransferase HisG, long form YPK_2526 IPR001692 Histidinol dehydrogenase, conserved site YPK_2526 IPR012131 Histidinol dehydrogenase YPK_2526 IPR016161 Aldehyde/histidinol dehydrogenase YPK_2526 IPR022695 Histidinol dehydrogenase, monofunctional YPK_2527 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPK_2527 IPR004839 Aminotransferase, class I/classII YPK_2527 IPR005861 Histidinol-phosphate aminotransferase family YPK_2527 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2527 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2527 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2528 IPR000807 Imidazoleglycerol-phosphate dehydratase YPK_2528 IPR005954 Histidinol-phosphatase YPK_2528 IPR006543 Histidinol-phosphate phosphatase YPK_2528 IPR006549 HAD-superfamily hydrolase,subfamily IIIA YPK_2528 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site YPK_2528 IPR020566 Histidine biosynthesis bifunctional protein HisB YPK_2528 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2528 IPR023214 HAD-like domain YPK_2528 IPR036412 YPK_2528 YPK_2528 IPR038494 YPK_2528 YPK_2529 IPR010139 Imidazole glycerol phosphate synthase, subunit H YPK_2529 IPR017926 Glutamine amidotransferase YPK_2529 IPR029062 Class I glutamine amidotransferase-like YPK_2530 IPR006062 Histidine biosynthesis YPK_2530 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA YPK_2530 IPR011060 Ribulose-phosphate binding barrel YPK_2530 IPR013785 Aldolase-type TIM barrel YPK_2530 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YPK_2531 IPR004651 Histidine biosynthesis, HisF YPK_2531 IPR006062 Histidine biosynthesis YPK_2531 IPR011060 Ribulose-phosphate binding barrel YPK_2531 IPR013785 Aldolase-type TIM barrel YPK_2532 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain YPK_2532 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase YPK_2532 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like YPK_2532 IPR023019 Histidine biosynthesis bifunctional protein HisIE YPK_2532 IPR038019 YPK_2532 YPK_2533 IPR002686 Transposase IS200-like YPK_2533 IPR036515 YPK_2533 YPK_2535 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating YPK_2535 IPR006114 6-phosphogluconate dehydrogenase, C-terminal YPK_2535 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding YPK_2535 IPR006183 YPK_2535 YPK_2535 IPR006184 6-phosphogluconate-binding site YPK_2535 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_2535 IPR013328 Dehydrogenase, multihelical YPK_2535 IPR036291 YPK_2535 YPK_2536 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPK_2536 IPR005835 Nucleotidyl transferase YPK_2536 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2537 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type YPK_2537 IPR005835 Nucleotidyl transferase YPK_2537 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2538 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPK_2538 IPR022770 Ferric iron reductase FhuF domain YPK_2539 IPR000531 TonB-dependent receptor, beta-barrel YPK_2539 IPR010105 TonB-dependent siderophore receptor YPK_2539 IPR010917 TonB-dependent receptor, conserved site YPK_2539 IPR012910 TonB-dependent receptor, plug YPK_2539 IPR036942 YPK_2539 YPK_2539 IPR037066 YPK_2539 YPK_2540 IPR002491 ABC transporter periplasmic binding domain YPK_2541 IPR000522 ABC transporter, permease protein YPK_2541 IPR037294 YPK_2541 YPK_2542 IPR000522 ABC transporter, permease protein YPK_2542 IPR037294 YPK_2542 YPK_2543 IPR003439 ABC transporter-like YPK_2543 IPR003593 AAA+ ATPase domain YPK_2543 IPR017871 ABC transporter, conserved site YPK_2543 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2544 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal YPK_2544 IPR022770 Ferric iron reductase FhuF domain YPK_2545 IPR016181 Acyl-CoA N-acyltransferase YPK_2545 IPR019432 Siderophore biosynthesis protein, conserved domain YPK_2546 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPK_2546 IPR036188 YPK_2546 YPK_2547 IPR002129 Pyridoxal phosphate-dependent decarboxylase YPK_2547 IPR010977 Aromatic-L-amino-acid decarboxylase YPK_2547 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2547 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2547 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2548 IPR008090 Ferric iron reductase YPK_2548 IPR022770 Ferric iron reductase FhuF domain YPK_2548 IPR024726 Ferric iron reductase, C-terminal YPK_2549 IPR000644 CBS domain YPK_2549 IPR005170 Transporter-associated domain YPK_2549 IPR005496 Integral membrane protein TerC YPK_2549 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_2549 IPR036318 YPK_2549 YPK_2550 IPR007844 AsmA YPK_2550 IPR032712 YPK_2550 YPK_2551 IPR011962 Deoxycytidine triphosphate deaminase YPK_2551 IPR029054 dUTPase-like YPK_2551 IPR036157 YPK_2551 YPK_2552 IPR000764 Uridine kinase like YPK_2552 IPR006083 Phosphoribulokinase/uridine kinase YPK_2552 IPR026008 Uridine kinase YPK_2552 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2553 IPR000808 Mrp, conserved site YPK_2553 IPR019591 Mrp/NBP35 ATP-binding protein YPK_2553 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2553 IPR033756 YPK_2553 YPK_2553 IPR034904 YPK_2553 YPK_2554 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_2554 IPR002547 tRNA-binding domain YPK_2554 IPR004495 Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal YPK_2554 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPK_2554 IPR012340 Nucleic acid-binding, OB-fold YPK_2554 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2554 IPR014758 Methionyl-tRNA synthetase YPK_2554 IPR015413 Methionyl/Leucyl tRNA synthetase YPK_2554 IPR023458 Methionine-tRNA ligase, type 1 YPK_2554 IPR029038 Methionyl-tRNA synthetase, Zn-domain YPK_2554 IPR033911 YPK_2554 YPK_2556 IPR025997 Periplasmic binding protein domain YPK_2556 IPR028082 Periplasmic binding protein-like I YPK_2557 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain YPK_2557 IPR013211 LVIVD YPK_2558 IPR011701 Major facilitator superfamily YPK_2558 IPR036259 YPK_2558 YPK_2559 IPR005538 LrgA/CidA family YPK_2559 IPR022957 Uncharacterised protein family UPF0299 YPK_2560 IPR005261 Conserved hypothetical protein CHP00659 YPK_2560 IPR007300 CidB/LrgB family YPK_2561 IPR002125 CMP/dCMP deaminase, zinc-binding YPK_2561 IPR006263 Cytidine deaminase, homodimeric YPK_2561 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain YPK_2561 IPR016192 APOBEC/CMP deaminase, zinc-binding YPK_2561 IPR016193 Cytidine deaminase-like YPK_2561 IPR020797 Cytidine deaminase, bacteria YPK_2562 IPR001891 Malic oxidoreductase YPK_2562 IPR012301 Malic enzyme, N-terminal domain YPK_2562 IPR012302 Malic enzyme, NAD-binding YPK_2562 IPR015884 Malic enzyme, conserved site YPK_2562 IPR023667 NAD-dependent malic enzyme, proteobacteria YPK_2562 IPR036291 YPK_2562 YPK_2562 IPR037062 YPK_2562 YPK_2563 IPR003848 Domain of unknown function DUF218 YPK_2563 IPR023604 Uncharacterised protein family SanA YPK_2564 IPR001851 ABC transporter, permease YPK_2565 IPR003439 ABC transporter-like YPK_2565 IPR003593 AAA+ ATPase domain YPK_2565 IPR017871 ABC transporter, conserved site YPK_2565 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2566 IPR025997 Periplasmic binding protein domain YPK_2566 IPR028082 Periplasmic binding protein-like I YPK_2567 IPR007349 Domain of unknown function DUF418 YPK_2568 IPR001474 GTP cyclohydrolase I YPK_2568 IPR018234 GTP cyclohydrolase I, conserved site YPK_2568 IPR020602 GTP cyclohydrolase I domain YPK_2569 IPR010645 Domain of unknown function DUF1228 YPK_2569 IPR036259 YPK_2569 YPK_2570 IPR000847 Transcription regulator HTH, LysR YPK_2570 IPR005119 LysR, substrate-binding YPK_2570 IPR036388 YPK_2570 YPK_2570 IPR036390 YPK_2570 YPK_2571 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPK_2571 IPR011032 GroES (chaperonin 10)-like YPK_2571 IPR013149 Alcohol dehydrogenase, C-terminal YPK_2571 IPR013154 Alcohol dehydrogenase GroES-like YPK_2571 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase YPK_2571 IPR020843 Polyketide synthase, enoylreductase YPK_2571 IPR036291 YPK_2571 YPK_2572 IPR000801 Putative esterase YPK_2572 IPR014186 S-formylglutathione hydrolase YPK_2572 IPR029058 Alpha/Beta hydrolase fold YPK_2576 IPR003439 ABC transporter-like YPK_2576 IPR003593 AAA+ ATPase domain YPK_2576 IPR017871 ABC transporter, conserved site YPK_2576 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2577 IPR007197 Radical SAM YPK_2577 IPR013785 Aldolase-type TIM barrel YPK_2577 IPR023885 4Fe4S-binding SPASM domain YPK_2578 IPR001453 Molybdopterin binding domain YPK_2578 IPR005110 MoeA, N-terminal and linker domain YPK_2578 IPR005111 MoeA, C-terminal, domain IV YPK_2578 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPK_2578 IPR036135 YPK_2578 YPK_2578 IPR036425 YPK_2578 YPK_2578 IPR036688 YPK_2578 YPK_2579 IPR000594 UBA/THIF-type NAD/FAD binding fold YPK_2579 IPR012730 Molybdopterin synthase sulfurylase MoeB YPK_2579 IPR035985 YPK_2579 YPK_2580 IPR031829 YPK_2580 YPK_2581 IPR003439 ABC transporter-like YPK_2581 IPR003593 AAA+ ATPase domain YPK_2581 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2581 IPR032781 YPK_2581 YPK_2582 IPR031829 YPK_2582 YPK_2582 IPR038334 YPK_2582 YPK_2583 IPR010657 ImpA, N-terminal YPK_2583 IPR021069 ImpA, C-terminal YPK_2584 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_2584 IPR017737 Type VI secretion system, lysozyme-related protein YPK_2585 IPR017734 Type VI secretion system, lipoprotein SciN YPK_2585 IPR038706 YPK_2585 YPK_2586 IPR010732 Protein of unknown function DUF1305 YPK_2587 IPR010272 Type VI secretion system, VCA0110 YPK_2589 IPR008727 PAAR motif YPK_2589 IPR028946 Putative toxin 60 YPK_2590 IPR010657 ImpA, N-terminal YPK_2590 IPR017739 Type VI secretion system-associated, VCA0119 YPK_2591 IPR009612 ImcF-related YPK_2591 IPR010623 Domain of unknown function DUF1215 YPK_2598 IPR010269 Protein of unknown function DUF877 YPK_2600 IPR008312 Uncharacterised conserved protein UCP028301 YPK_2602 IPR001227 Acyl transferase domain YPK_2602 IPR014043 Acyl transferase YPK_2602 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPK_2602 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPK_2602 IPR020801 Polyketide synthase, acyl transferase domain YPK_2602 IPR024925 Malonyl CoA-acyl carrier protein transacylase YPK_2603 IPR009081 Acyl carrier protein-like YPK_2603 IPR036736 YPK_2603 YPK_2604 IPR024311 Lipocalin-like domain YPK_2605 IPR002347 Glucose/ribitol dehydrogenase YPK_2605 IPR036291 YPK_2605 YPK_2606 IPR001753 Crotonase superfamily YPK_2606 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPK_2606 IPR029045 ClpP/crotonase-like domain YPK_2607 IPR001753 Crotonase superfamily YPK_2607 IPR029045 ClpP/crotonase-like domain YPK_2608 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal YPK_2608 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain YPK_2608 IPR016039 Thiolase-like YPK_2609 IPR002347 Glucose/ribitol dehydrogenase YPK_2609 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_2609 IPR036291 YPK_2609 YPK_2610 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_2610 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_2610 IPR016039 Thiolase-like YPK_2610 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_2611 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPK_2611 IPR029069 HotDog domain YPK_2613 IPR002347 Glucose/ribitol dehydrogenase YPK_2613 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_2613 IPR036291 YPK_2613 YPK_2614 IPR006093 Oxygen oxidoreductase covalent FAD-binding site YPK_2614 IPR006094 FAD linked oxidase, N-terminal YPK_2614 IPR016167 FAD-binding, type 2, subdomain 1 YPK_2614 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_2614 IPR016181 Acyl-CoA N-acyltransferase YPK_2614 IPR036318 YPK_2614 YPK_2614 IPR038740 YPK_2614 YPK_2615 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain YPK_2615 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPK_2615 IPR031886 YPK_2615 YPK_2615 IPR037040 YPK_2615 YPK_2616 IPR012337 Ribonuclease H-like domain YPK_2616 IPR032874 YPK_2616 YPK_2618 IPR007453 Sulphur transfer protein DsrC/TusE YPK_2618 IPR025526 DsrC-like domain YPK_2619 IPR001792 Acylphosphatase-like domain YPK_2619 IPR017968 Acylphosphatase, conserved site YPK_2619 IPR020456 Acylphosphatase YPK_2619 IPR028627 Acylphosphatase, bacteria YPK_2619 IPR036046 YPK_2619 YPK_2620 IPR002478 PUA domain YPK_2620 IPR015947 PUA-like domain YPK_2620 IPR019614 S-adenosylmethionine-dependent methyltransferase YPK_2620 IPR023542 rRNA large subunit methyltransferase I YPK_2620 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2620 IPR036974 YPK_2620 YPK_2621 IPR011722 Hemimethylated DNA-binding domain YPK_2621 IPR022866 Heat shock protein HspQ YPK_2621 IPR036623 YPK_2621 YPK_2622 IPR003781 CoA-binding YPK_2622 IPR036291 YPK_2622 YPK_2623 IPR018635 Uncharacterised protein family UPF0319 YPK_2624 IPR004363 Methylglyoxal synthase YPK_2624 IPR011607 Methylglyoxal synthase-like domain YPK_2624 IPR018148 Methylglyoxal synthase, active site YPK_2624 IPR036914 YPK_2624 YPK_2625 IPR014017 DNA helicase, UvrD-like, C-terminal YPK_2625 IPR022161 DNA helicase IV, N-terminal domain YPK_2625 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2625 IPR034739 YPK_2625 YPK_2626 IPR005185 Protein of unknown function DUF307 YPK_2626 IPR031308 YPK_2626 YPK_2627 IPR010019 Integral membrane protein, YccS YPK_2627 IPR010020 Integral membrane protein, YccS/YhfK YPK_2627 IPR032692 YPK_2627 YPK_2628 IPR007076 TfoX, N-terminal YPK_2628 IPR007077 TfoX, C-terminal YPK_2628 IPR026256 Transcriptional regulator, TfoX/Sxy-type YPK_2629 IPR004596 Cell division suppressor protein, SulA YPK_2629 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2630 IPR000498 Outer membrane protein, OmpA-like, transmembrane domain YPK_2630 IPR002368 Outer membrane protein, OmpA YPK_2630 IPR006664 Outer membrane protein, bacterial YPK_2630 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_2630 IPR006690 Outer membrane protein, OmpA-like, conserved site YPK_2630 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_2630 IPR036737 YPK_2630 YPK_2631 IPR002686 Transposase IS200-like YPK_2631 IPR036515 YPK_2631 YPK_2632 IPR009390 Macrodomain Ter protein, MatP YPK_2632 IPR013321 Arc-type ribbon-helix-helix YPK_2632 IPR035087 YPK_2632 YPK_2632 IPR035375 YPK_2632 YPK_2632 IPR038339 YPK_2632 YPK_2633 IPR008269 Peptidase S16, Lon C-terminal YPK_2633 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_2633 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2634 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YPK_2634 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YPK_2634 IPR029069 HotDog domain YPK_2636 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_2636 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_2636 IPR016039 Thiolase-like YPK_2636 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YPK_2636 IPR018201 Beta-ketoacyl synthase, active site YPK_2636 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_2637 IPR005586 Protein of unknown function DUF330 YPK_2638 IPR003399 Mammalian cell entry-related YPK_2639 IPR005219 Conserved hypothetical protein CHP00155 YPK_2639 IPR007498 Paraquat-inducible protein A YPK_2640 IPR003439 ABC transporter-like YPK_2640 IPR003593 AAA+ ATPase domain YPK_2640 IPR017871 ABC transporter, conserved site YPK_2640 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2640 IPR032524 YPK_2640 YPK_2640 IPR032781 YPK_2640 YPK_2640 IPR037118 YPK_2640 YPK_2641 IPR000241 Putative RNA methylase domain YPK_2641 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_2641 IPR004114 THUMP YPK_2641 IPR017244 Ribosomal RNA large subunit methyltransferase K/L YPK_2641 IPR019614 S-adenosylmethionine-dependent methyltransferase YPK_2641 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2642 IPR001041 2Fe-2S ferredoxin-type domain YPK_2642 IPR005302 Molybdenum cofactor sulfurase, C-terminal YPK_2642 IPR005303 MOSC, N-terminal beta barrel YPK_2642 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPK_2642 IPR011037 Pyruvate kinase-like, insert domain YPK_2642 IPR012675 Beta-grasp domain YPK_2642 IPR036010 YPK_2642 YPK_2643 IPR009809 Cell division protein ZapC YPK_2644 IPR001295 Dihydroorotate dehydrogenase, conserved site YPK_2644 IPR005719 Dihydroorotate dehydrogenase, class 2 YPK_2644 IPR005720 Dihydroorotate dehydrogenase domain YPK_2644 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 YPK_2644 IPR013785 Aldolase-type TIM barrel YPK_2645 IPR012779 Peptidase M1, alanyl aminopeptidase YPK_2645 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal YPK_2645 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YPK_2645 IPR027268 YPK_2645 YPK_2645 IPR035414 YPK_2645 YPK_2645 IPR037144 YPK_2645 YPK_2645 IPR038438 YPK_2645 YPK_2647 IPR006406 Nicotinate phosphoribosyltransferase YPK_2647 IPR007229 Nicotinate phosphoribosyltransferase family YPK_2647 IPR036068 YPK_2647 YPK_2648 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YPK_2648 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPK_2648 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YPK_2648 IPR004522 Asparagine-tRNA ligase YPK_2648 IPR012340 Nucleic acid-binding, OB-fold YPK_2649 IPR001702 Porin, Gram-negative type YPK_2649 IPR001897 Porin, gammaproteobacterial YPK_2649 IPR013793 Porin, Gram-negative type, conserved site YPK_2649 IPR023614 Porin domain YPK_2650 IPR000796 Aspartate/other aminotransferase YPK_2650 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPK_2650 IPR004839 Aminotransferase, class I/classII YPK_2650 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2650 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2650 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2652 IPR001279 Beta-lactamase-like YPK_2652 IPR036866 YPK_2652 YPK_2653 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain YPK_2653 IPR010275 Protein of unknown function DUF882 YPK_2654 IPR002477 Peptidoglycan binding-like YPK_2654 IPR005490 L,D-transpeptidase catalytic domain YPK_2654 IPR036365 YPK_2654 YPK_2654 IPR036366 YPK_2654 YPK_2654 IPR038063 YPK_2654 YPK_2655 IPR007406 MukB, N-terminal domain YPK_2655 IPR012090 Chromosome partition protein MukB YPK_2655 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2655 IPR032520 YPK_2655 YPK_2656 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE YPK_2657 IPR005582 Chromosome partition protein MukF YPK_2657 IPR010916 TonB box, conserved site YPK_2657 IPR033439 YPK_2657 YPK_2657 IPR033440 YPK_2657 YPK_2657 IPR033441 YPK_2657 YPK_2657 IPR036141 YPK_2657 YPK_2657 IPR036388 YPK_2657 YPK_2657 IPR036390 YPK_2657 YPK_2657 IPR038198 YPK_2657 YPK_2658 IPR025714 Methyltransferase domain YPK_2658 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2658 IPR033664 YPK_2658 YPK_2659 IPR011009 Protein kinase-like domain YPK_2659 IPR016477 Fructosamine/Ketosamine-3-kinase YPK_2660 IPR003329 Acylneuraminate cytidylyltransferase YPK_2660 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase YPK_2660 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2661 IPR005651 Uncharacterised protein family UPF0434/Trm112 YPK_2661 IPR038053 YPK_2661 YPK_2662 IPR002059 Cold-shock protein, DNA-binding YPK_2662 IPR011129 Cold shock protein YPK_2662 IPR012156 Cold shock, CspA YPK_2662 IPR012340 Nucleic acid-binding, OB-fold YPK_2663 IPR009770 Domain of unknown function DUF1338 YPK_2664 IPR003758 Tetraacyldisaccharide 4'-kinase YPK_2664 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2665 IPR003439 ABC transporter-like YPK_2665 IPR003593 AAA+ ATPase domain YPK_2665 IPR011527 ABC transporter type 1, transmembrane domain YPK_2665 IPR011917 ABC transporter, lipid A export, MsbA YPK_2665 IPR017871 ABC transporter, conserved site YPK_2665 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2665 IPR036640 YPK_2665 YPK_2666 IPR001279 Beta-lactamase-like YPK_2666 IPR004477 ComEC/Rec2-related protein YPK_2666 IPR004797 Competence protein ComEC/Rec2 YPK_2666 IPR025405 Domain of unknown function DUF4131 YPK_2666 IPR036866 YPK_2666 YPK_2667 IPR000119 Histone-like bacterial DNA-binding protein YPK_2667 IPR005685 Integration host factor, beta subunit YPK_2667 IPR010992 Integration host factor (IHF)-like DNA-binding domain YPK_2667 IPR020816 Histone-like DNA-binding protein, conserved site YPK_2668 IPR000110 Ribosomal protein S1 YPK_2668 IPR003029 Ribosomal protein S1, RNA-binding domain YPK_2668 IPR012340 Nucleic acid-binding, OB-fold YPK_2668 IPR022967 RNA-binding domain, S1 YPK_2669 IPR003136 Cytidylate kinase YPK_2669 IPR011994 Cytidylate kinase domain YPK_2669 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2670 IPR001986 Enolpyruvate transferase domain YPK_2670 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase YPK_2670 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YPK_2670 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site YPK_2670 IPR036968 YPK_2670 YPK_2671 IPR000192 Aminotransferase class V domain YPK_2671 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2671 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2671 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2671 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YPK_2671 IPR022278 Phosphoserine aminotransferase YPK_2672 IPR005594 YadA-like, C-terminal YPK_2672 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_2673 IPR005594 YadA-like, C-terminal YPK_2673 IPR008126 Outer membrane adhesion, Yersinia YPK_2673 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_2674 IPR004550 L-asparaginase, type II YPK_2674 IPR006034 Asparaginase/glutaminase YPK_2674 IPR020827 Asparaginase/glutaminase, active site 1 YPK_2674 IPR027473 L-asparaginase, C-terminal domain YPK_2674 IPR027474 L-asparaginase, N-terminal YPK_2674 IPR027475 Asparaginase/glutaminase, active site 2 YPK_2674 IPR036152 YPK_2674 YPK_2674 IPR037152 YPK_2674 YPK_2675 IPR003776 YcaO-like domain YPK_2676 IPR000292 Formate/nitrite transporter YPK_2676 IPR023271 Aquaporin-like YPK_2676 IPR023999 Formate transporter FocA, putative YPK_2676 IPR024002 Formate/nitrite transporter, conserved site YPK_2677 IPR001150 Glycine radical domain YPK_2677 IPR004184 Pyruvate formate lyase domain YPK_2677 IPR005949 Formate acetyltransferase YPK_2677 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPK_2678 IPR002654 Glycosyl transferase, family 25 YPK_2679 IPR001989 Radical-activating enzyme, conserved site YPK_2679 IPR007197 Radical SAM YPK_2679 IPR012838 Pyruvate formate-lyase activating enzyme YPK_2679 IPR012839 Glycyl radical enzyme activase YPK_2679 IPR013785 Aldolase-type TIM barrel YPK_2680 IPR011701 Major facilitator superfamily YPK_2680 IPR023745 MSF-type transporter, YcaD YPK_2680 IPR036259 YPK_2680 YPK_2681 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YPK_2681 IPR002317 Serine-tRNA ligase, type1 YPK_2681 IPR010978 tRNA-binding arm YPK_2681 IPR015866 Serine-tRNA synthetase, type1, N-terminal YPK_2683 IPR003593 AAA+ ATPase domain YPK_2683 IPR003959 ATPase, AAA-type, core YPK_2683 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPK_2683 IPR021886 MgsA AAA+ ATPase C-terminal YPK_2683 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2683 IPR032423 YPK_2683 YPK_2684 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YPK_2684 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria YPK_2684 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPK_2685 IPR002543 FtsK domain YPK_2685 IPR018541 FtsK gamma domain YPK_2685 IPR025199 Domain of unknown function DUF4117 YPK_2685 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2685 IPR036388 YPK_2685 YPK_2685 IPR036390 YPK_2685 YPK_2686 IPR000485 AsnC-type HTH domain YPK_2686 IPR011008 Dimeric alpha-beta barrel YPK_2686 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPK_2686 IPR019887 Transcription regulator AsnC-type, C-terminal YPK_2686 IPR019888 Transcription regulator AsnC-type YPK_2686 IPR036388 YPK_2686 YPK_2686 IPR036390 YPK_2686 YPK_2687 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II YPK_2687 IPR005982 Thioredoxin reductase YPK_2687 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site YPK_2687 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_2687 IPR036188 YPK_2687 YPK_2688 IPR003439 ABC transporter-like YPK_2688 IPR003593 AAA+ ATPase domain YPK_2688 IPR011527 ABC transporter type 1, transmembrane domain YPK_2688 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD YPK_2688 IPR017871 ABC transporter, conserved site YPK_2688 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2688 IPR036640 YPK_2688 YPK_2689 IPR003439 ABC transporter-like YPK_2689 IPR003593 AAA+ ATPase domain YPK_2689 IPR011527 ABC transporter type 1, transmembrane domain YPK_2689 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC YPK_2689 IPR017871 ABC transporter, conserved site YPK_2689 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2689 IPR036640 YPK_2689 YPK_2690 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase YPK_2690 IPR016181 Acyl-CoA N-acyltransferase YPK_2691 IPR004368 Translation initiation factor IF-1 YPK_2691 IPR006196 RNA-binding domain, S1, IF1 type YPK_2691 IPR012340 Nucleic acid-binding, OB-fold YPK_2691 IPR022967 RNA-binding domain, S1 YPK_2692 IPR001270 ClpA/B family YPK_2692 IPR003593 AAA+ ATPase domain YPK_2692 IPR003959 ATPase, AAA-type, core YPK_2692 IPR004176 Clp, N-terminal YPK_2692 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA YPK_2692 IPR018368 ClpA/B, conserved site 1 YPK_2692 IPR019489 Clp ATPase, C-terminal YPK_2692 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2692 IPR028299 ClpA/B, conserved site 2 YPK_2692 IPR036628 YPK_2692 YPK_2693 IPR003769 Adaptor protein ClpS, core YPK_2693 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPK_2693 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YPK_2694 IPR002059 Cold-shock protein, DNA-binding YPK_2694 IPR011129 Cold shock protein YPK_2694 IPR012156 Cold shock, CspA YPK_2694 IPR012340 Nucleic acid-binding, OB-fold YPK_2694 IPR012751 CspD, cold shock YPK_2694 IPR019844 Cold-shock conserved site YPK_2695 IPR003439 ABC transporter-like YPK_2695 IPR003593 AAA+ ATPase domain YPK_2695 IPR003838 Permease FtsX-like YPK_2695 IPR017871 ABC transporter, conserved site YPK_2695 IPR025857 MacB-like periplasmic core domain YPK_2695 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2696 IPR006143 RND efflux pump, membrane fusion protein YPK_2696 IPR032317 YPK_2696 YPK_2697 IPR007488 Protein of unknown function DUF535 YPK_2699 IPR022602 Protein of unknown function DUF2813 YPK_2699 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2700 IPR005642 Protein of unknown function DUF340, prokaryotic membrane YPK_2701 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase YPK_2701 IPR010048 Hydroxylamine reductase YPK_2701 IPR011254 Prismane-like YPK_2701 IPR016099 Prismane-like, alpha/beta-sandwich YPK_2701 IPR016100 Prismane, alpha-bundle YPK_2702 IPR001041 2Fe-2S ferredoxin-type domain YPK_2702 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPK_2702 IPR001834 NADH:cytochrome b5 reductase (CBR) YPK_2702 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPK_2702 IPR008333 Oxidoreductase, FAD-binding domain YPK_2702 IPR012675 Beta-grasp domain YPK_2702 IPR017938 Riboflavin synthase-like beta-barrel YPK_2702 IPR036010 YPK_2702 YPK_2702 IPR039261 YPK_2702 YPK_2703 IPR000399 TPP-binding enzyme, conserved site YPK_2703 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPK_2703 IPR012000 Thiamine pyrophosphate enzyme, central domain YPK_2703 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPK_2703 IPR029035 DHS-like NAD/FAD-binding domain YPK_2703 IPR029061 Thiamin diphosphate-binding fold YPK_2705 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase YPK_2705 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2705 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2705 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2705 IPR023603 Threonine aldolase YPK_2706 IPR016040 NAD(P)-binding domain YPK_2706 IPR021295 Protein of unknown function DUF2867 YPK_2706 IPR036291 YPK_2706 YPK_2707 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_2707 IPR036291 YPK_2707 YPK_2708 IPR024289 Domain of unknown function DUF3828 YPK_2709 IPR002701 Chorismate mutase YPK_2709 IPR008240 Chorismate mutase, periplasmic YPK_2709 IPR036263 YPK_2709 YPK_2710 IPR003439 ABC transporter-like YPK_2710 IPR003593 AAA+ ATPase domain YPK_2710 IPR017871 ABC transporter, conserved site YPK_2710 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2710 IPR030679 YPK_2710 YPK_2711 IPR001320 Ionotropic glutamate receptor YPK_2711 IPR001638 Extracellular solute-binding protein, family 3 YPK_2711 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein YPK_2711 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPK_2712 IPR000515 MetI-like domain YPK_2712 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_2712 IPR035906 YPK_2712 YPK_2713 IPR000515 MetI-like domain YPK_2713 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_2713 IPR035906 YPK_2713 YPK_2715 IPR000620 Drug/metabolite transporter YPK_2716 IPR016935 Protein of unknown function DUF2338 YPK_2716 IPR036291 YPK_2716 YPK_2717 IPR004298 Nicotianamine synthase YPK_2717 IPR036291 YPK_2717 YPK_2718 IPR003439 ABC transporter-like YPK_2718 IPR003593 AAA+ ATPase domain YPK_2718 IPR017871 ABC transporter, conserved site YPK_2718 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2719 IPR000522 ABC transporter, permease protein YPK_2719 IPR037294 YPK_2719 YPK_2720 IPR002491 ABC transporter periplasmic binding domain YPK_2721 IPR001107 Band 7 protein YPK_2721 IPR036013 YPK_2721 YPK_2724 IPR001320 Ionotropic glutamate receptor YPK_2724 IPR001638 Extracellular solute-binding protein, family 3 YPK_2724 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein YPK_2724 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPK_2725 IPR010280 (Uracil-5)-methyltransferase family YPK_2725 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC YPK_2725 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2725 IPR030390 YPK_2725 YPK_2725 IPR030391 YPK_2725 YPK_2726 IPR019703 Protein of unknown function DUF2593 YPK_2727 IPR000515 MetI-like domain YPK_2727 IPR035906 YPK_2727 YPK_2728 IPR000515 MetI-like domain YPK_2728 IPR035906 YPK_2728 YPK_2729 IPR003439 ABC transporter-like YPK_2729 IPR003593 AAA+ ATPase domain YPK_2729 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit YPK_2729 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2729 IPR013611 Transport-associated OB, type 2 YPK_2729 IPR017871 ABC transporter, conserved site YPK_2729 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2730 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein YPK_2730 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_2731 IPR019660 Putative sensory transduction regulator YbjN YPK_2732 IPR010815 Protein of unknown function DUF1418 YPK_2733 IPR002109 Glutaredoxin YPK_2733 IPR011767 Glutaredoxin active site YPK_2733 IPR011902 Glutaredoxin, GrxA YPK_2733 IPR014025 Glutaredoxin subgroup YPK_2733 IPR036249 YPK_2733 YPK_2734 IPR006037 Regulator of K+ conductance, C-terminal YPK_2734 IPR006512 YidE/YbjL duplication YPK_2734 IPR023017 Transport protein YbjL, putative YPK_2734 IPR036721 YPK_2734 YPK_2735 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2735 IPR036938 YPK_2735 YPK_2736 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2736 IPR036938 YPK_2736 YPK_2737 IPR002915 DeoC/FbaB/ lacD aldolase YPK_2737 IPR011343 Deoxyribose-phosphate aldolase YPK_2737 IPR013785 Aldolase-type TIM barrel YPK_2737 IPR028581 Deoxyribose-phosphate aldolase type I YPK_2738 IPR001034 HTH DeoR N-terminal domain YPK_2738 IPR014036 DeoR C-terminal sensor domain YPK_2738 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPK_2738 IPR037171 YPK_2738 YPK_2739 IPR004694 Hydroxy amino acid transporter YPK_2739 IPR018227 Tryptophan/tyrosine permease YPK_2740 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPK_2740 IPR012338 Beta-lactamase/transpeptidase-like YPK_2740 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPK_2740 IPR015956 Penicillin-binding protein-associated YPK_2740 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPK_2740 IPR037167 YPK_2740 YPK_2741 IPR000515 MetI-like domain YPK_2741 IPR035906 YPK_2741 YPK_2742 IPR003439 ABC transporter-like YPK_2742 IPR003593 AAA+ ATPase domain YPK_2742 IPR017871 ABC transporter, conserved site YPK_2742 IPR018449 NIL domain YPK_2742 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2743 IPR004872 Lipoprotein NlpA family YPK_2744 IPR005123 Oxoglutarate/iron-dependent dioxygenase YPK_2744 IPR026992 Non-haem dioxygenase N-terminal domain YPK_2744 IPR027443 Isopenicillin N synthase-like YPK_2746 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial YPK_2746 IPR023214 HAD-like domain YPK_2746 IPR036412 YPK_2746 YPK_2747 IPR004045 Glutathione S-transferase, N-terminal YPK_2747 IPR004046 Glutathione S-transferase, C-terminal YPK_2747 IPR036249 YPK_2747 YPK_2747 IPR036282 YPK_2747 YPK_2748 IPR000531 TonB-dependent receptor, beta-barrel YPK_2748 IPR010916 TonB box, conserved site YPK_2748 IPR012910 TonB-dependent receptor, plug YPK_2748 IPR036942 YPK_2748 YPK_2748 IPR037066 YPK_2748 YPK_2749 IPR003439 ABC transporter-like YPK_2749 IPR003593 AAA+ ATPase domain YPK_2749 IPR017871 ABC transporter, conserved site YPK_2749 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2750 IPR000522 ABC transporter, permease protein YPK_2750 IPR037294 YPK_2750 YPK_2751 IPR002491 ABC transporter periplasmic binding domain YPK_2752 IPR002293 Amino acid/polyamine transporter I YPK_2752 IPR004840 Amino acid permease, conserved site YPK_2752 IPR004841 Amino acid permease/ SLC12A domain YPK_2754 IPR000847 Transcription regulator HTH, LysR YPK_2754 IPR005119 LysR, substrate-binding YPK_2754 IPR036388 YPK_2754 YPK_2754 IPR036390 YPK_2754 YPK_2755 IPR004630 Uncharacterised protein family UPF0324, bacteria YPK_2755 IPR018383 Uncharacterised protein family UPF0324, prokaryote YPK_2756 IPR001719 AP endonuclease 2 YPK_2756 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_2756 IPR018246 AP endonuclease 2, zinc binding site YPK_2756 IPR036237 YPK_2756 YPK_2757 IPR000015 Outer membrane usher protein YPK_2757 IPR018030 Fimbrial membrane usher, conserved site YPK_2757 IPR025885 PapC, N-terminal domain YPK_2757 IPR025949 PapC-like, C-terminal domain YPK_2757 IPR037224 YPK_2757 YPK_2758 IPR001829 Pili assembly chaperone, bacterial YPK_2758 IPR008962 PapD-like YPK_2758 IPR013783 Immunoglobulin-like fold YPK_2758 IPR016147 PapD, N-terminal, bacterial YPK_2758 IPR016148 Pili assembly chaperone, C-terminal domain YPK_2758 IPR018046 Pili assembly chaperone, conserved site YPK_2758 IPR036316 YPK_2758 YPK_2760 IPR035182 YPK_2760 YPK_2761 IPR001867 Signal transduction response regulator, C-terminal YPK_2761 IPR016032 Signal transduction response regulator, C-terminal effector YPK_2761 IPR036388 YPK_2761 YPK_2762 IPR003352 Phosphotransferase system, EIIC YPK_2762 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPK_2762 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPK_2762 IPR006327 Phosphotransferase system, fructose IIC component YPK_2762 IPR036095 YPK_2762 YPK_2763 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPK_2763 IPR011611 Carbohydrate kinase PfkB YPK_2763 IPR017583 Tagatose/fructose phosphokinase YPK_2763 IPR022463 Fructose 1-phosphate kinase YPK_2763 IPR029056 Ribokinase-like YPK_2764 IPR000032 Phosphocarrier HPr protein-like YPK_2764 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPK_2764 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPK_2764 IPR002178 PTS EIIA type-2 domain YPK_2764 IPR016152 Phosphotransferase/anion transporter YPK_2764 IPR035895 YPK_2764 YPK_2765 IPR000086 NUDIX hydrolase domain YPK_2765 IPR015797 NUDIX hydrolase domain-like YPK_2765 IPR020084 NUDIX hydrolase, conserved site YPK_2765 IPR020476 NUDIX hydrolase YPK_2766 IPR001851 ABC transporter, permease YPK_2767 IPR003439 ABC transporter-like YPK_2767 IPR003593 AAA+ ATPase domain YPK_2767 IPR017871 ABC transporter, conserved site YPK_2767 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2768 IPR025997 Periplasmic binding protein domain YPK_2768 IPR028082 Periplasmic binding protein-like I YPK_2769 IPR004788 Ribose 5-phosphate isomerase, type A YPK_2769 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup YPK_2769 IPR037171 YPK_2769 YPK_2770 IPR000577 YPK_2770 YPK_2770 IPR006000 Xylulokinase YPK_2770 IPR018483 Carbohydrate kinase, FGGY, conserved site YPK_2770 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_2770 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_2771 IPR015590 Aldehyde dehydrogenase domain YPK_2771 IPR016160 Aldehyde dehydrogenase, cysteine active site YPK_2771 IPR016161 Aldehyde/histidinol dehydrogenase YPK_2771 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_2771 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_2772 IPR011234 Fumarylacetoacetase, C-terminal-related YPK_2772 IPR036663 YPK_2772 YPK_2773 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_2773 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain YPK_2773 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_2773 IPR036291 YPK_2773 YPK_2774 IPR002347 Glucose/ribitol dehydrogenase YPK_2774 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_2774 IPR036291 YPK_2774 YPK_2775 IPR005358 Putative zinc- or iron-chelating domain containing protein YPK_2776 IPR002293 Amino acid/polyamine transporter I YPK_2776 IPR013059 Tryptophan/tyrosine transporter YPK_2776 IPR018227 Tryptophan/tyrosine permease YPK_2777 IPR001059 Translation elongation factor P/YeiP, central YPK_2777 IPR008991 Translation protein SH3-like domain YPK_2777 IPR011897 Translation elongation factor P-like, YeiP YPK_2777 IPR012340 Nucleic acid-binding, OB-fold YPK_2777 IPR013185 Translation elongation factor, KOW-like YPK_2777 IPR013852 Translation elongation factor P/YeiP, conserved site YPK_2777 IPR014722 Ribosomal protein L2 domain 2 YPK_2777 IPR015365 Elongation factor P, C-terminal YPK_2777 IPR020599 Translation elongation factor P/YeiP YPK_2778 IPR004628 Mannonate dehydratase YPK_2778 IPR036237 YPK_2778 YPK_2779 IPR000669 Mannitol dehydrogenase YPK_2779 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_2779 IPR013118 Mannitol dehydrogenase, C-terminal YPK_2779 IPR013131 Mannitol dehydrogenase, N-terminal YPK_2779 IPR013328 Dehydrogenase, multihelical YPK_2779 IPR023027 Mannitol dehydrogenase, conserved site YPK_2779 IPR036291 YPK_2779 YPK_2780 IPR000524 Transcription regulator HTH, GntR YPK_2780 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_2780 IPR011711 GntR, C-terminal YPK_2780 IPR036388 YPK_2780 YPK_2780 IPR036390 YPK_2780 YPK_2782 IPR003495 CobW/HypB/UreG domain YPK_2782 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YPK_2782 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2783 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2783 IPR032908 YPK_2783 YPK_2783 IPR036938 YPK_2783 YPK_2784 IPR000064 Endopeptidase, NLPC/P60 domain YPK_2784 IPR038765 YPK_2784 YPK_2785 IPR001633 EAL domain YPK_2785 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YPK_2785 IPR035919 YPK_2785 YPK_2786 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_2786 IPR030678 YPK_2786 YPK_2787 IPR000515 MetI-like domain YPK_2787 IPR035906 YPK_2787 YPK_2788 IPR000515 MetI-like domain YPK_2788 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_2788 IPR035906 YPK_2788 YPK_2789 IPR003439 ABC transporter-like YPK_2789 IPR003593 AAA+ ATPase domain YPK_2789 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal YPK_2789 IPR017871 ABC transporter, conserved site YPK_2789 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2790 IPR020489 Uncharacterised protein family YejG YPK_2792 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YPK_2792 IPR011701 Major facilitator superfamily YPK_2792 IPR036259 YPK_2792 YPK_2793 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPK_2793 IPR002942 RNA-binding S4 domain YPK_2793 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPK_2793 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPK_2793 IPR020103 Pseudouridine synthase, catalytic domain YPK_2793 IPR036986 YPK_2793 YPK_2794 IPR001650 Helicase, C-terminal YPK_2794 IPR006935 Helicase/UvrB domain YPK_2794 IPR011332 Zinc-binding ribosomal protein YPK_2794 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_2794 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2795 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain YPK_2795 IPR020055 Ribosomal protein L25, short-form YPK_2795 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain YPK_2795 IPR029751 Ribosomal protein L25 YPK_2796 IPR007358 Nucleoid-associated protein NdpA YPK_2797 IPR009857 Uncharacterised protein family UPF0352 YPK_2797 IPR023202 YejL-like domain YPK_2798 IPR000917 Sulfatase YPK_2798 IPR012159 Membrane sulfatase, HI0842-related YPK_2798 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_2798 IPR017850 Alkaline-phosphatase-like, core domain YPK_2798 IPR024588 Membrane sulfatase, HI0842-related, N-terminal domain YPK_2802 IPR015287 Colicin D immunity protein domain YPK_2802 IPR036471 YPK_2802 YPK_2805 IPR001360 Glycoside hydrolase, family 1 YPK_2805 IPR017853 Glycoside hydrolase, superfamily YPK_2805 IPR018120 Glycoside hydrolase, family 1, active site YPK_2805 IPR033132 YPK_2805 YPK_2807 IPR000281 Helix-turn-helix protein RpiR YPK_2807 IPR001347 Sugar isomerase (SIS) YPK_2807 IPR009057 Homeodomain-like YPK_2807 IPR036388 YPK_2807 YPK_2808 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_2810 IPR018755 Bacteriophage Mu, Gp48 YPK_2811 IPR006949 Baseplate assembly protein J-like, predicted YPK_2812 IPR010877 Bacteriophage Mu, Gp46 YPK_2813 IPR014462 Bacteriophage Mu, Gp45 YPK_2814 IPR023399 Baseplate-like protein, two-layer sandwich domain YPK_2814 IPR026276 Baseplate protein GpP YPK_2815 IPR009826 DNA circulation, N-terminal YPK_2817 IPR019289 Bacteriophage tail protein Gp41, putative YPK_2818 IPR019596 Bacteriophage Mu, GpM, tail tube YPK_2819 IPR007067 Tail sheath protein YPK_2819 IPR020287 Tail sheath protein, C-terminal domain YPK_2819 IPR035089 YPK_2819 YPK_2820 IPR024400 Protein of unknown function DUF2635 YPK_2823 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_2823 IPR026040 Hydroxypyruvate isomerase-like YPK_2823 IPR036237 YPK_2823 YPK_2824 IPR001034 HTH DeoR N-terminal domain YPK_2824 IPR014036 DeoR C-terminal sensor domain YPK_2824 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPK_2824 IPR036388 YPK_2824 YPK_2824 IPR036390 YPK_2824 YPK_2824 IPR037171 YPK_2824 YPK_2825 IPR001303 Class II aldolase/adducin N-terminal YPK_2825 IPR036409 YPK_2825 YPK_2826 IPR010737 Protein of unknown function, DUF1537 YPK_2826 IPR031475 YPK_2826 YPK_2826 IPR037051 YPK_2826 YPK_2827 IPR010534 Bacteriophage 933W, GpQ YPK_2829 IPR001387 Cro/C1-type helix-turn-helix domain YPK_2829 IPR010982 Lambda repressor-like, DNA-binding domain YPK_2829 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_2829 IPR036286 YPK_2829 YPK_2830 IPR010391 DNA damage-inducible protein DinI-like YPK_2830 IPR036687 YPK_2830 YPK_2831 IPR000036 Peptidase A26, omptin YPK_2831 IPR020080 Outer membrane adhesin/peptidase omptin YPK_2833 IPR003660 HAMP linker domain YPK_2833 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_2833 IPR029151 Periplasmic sensor domain-like YPK_2833 IPR033479 YPK_2833 YPK_2834 IPR001279 Beta-lactamase-like YPK_2834 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D YPK_2834 IPR036866 YPK_2834 YPK_2835 IPR036259 YPK_2835 YPK_2836 IPR001466 Beta-lactamase-related YPK_2836 IPR012338 Beta-lactamase/transpeptidase-like YPK_2837 IPR009783 Protein of unknown function DUF1348 YPK_2837 IPR032710 YPK_2837 YPK_2838 IPR001647 DNA-binding HTH domain, TetR-type YPK_2838 IPR009057 Homeodomain-like YPK_2838 IPR036271 YPK_2838 YPK_2839 IPR001702 Porin, Gram-negative type YPK_2839 IPR001897 Porin, gammaproteobacterial YPK_2839 IPR013793 Porin, Gram-negative type, conserved site YPK_2839 IPR023614 Porin domain YPK_2841 IPR011701 Major facilitator superfamily YPK_2841 IPR036259 YPK_2841 YPK_2842 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_2842 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_2842 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPK_2842 IPR030861 YPK_2842 YPK_2842 IPR032306 YPK_2842 YPK_2842 IPR036641 YPK_2842 YPK_2842 IPR036890 YPK_2842 YPK_2842 IPR038616 YPK_2842 YPK_2843 IPR000792 Transcription regulator LuxR, C-terminal YPK_2843 IPR001789 Signal transduction response regulator, receiver domain YPK_2843 IPR011006 CheY-like superfamily YPK_2843 IPR016032 Signal transduction response regulator, C-terminal effector YPK_2843 IPR030864 YPK_2843 YPK_2843 IPR036388 YPK_2843 YPK_2844 IPR001789 Signal transduction response regulator, receiver domain YPK_2844 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_2844 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_2844 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_2844 IPR011006 CheY-like superfamily YPK_2844 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal YPK_2844 IPR030856 YPK_2844 YPK_2844 IPR036097 YPK_2844 YPK_2844 IPR036890 YPK_2844 YPK_2844 IPR038388 YPK_2844 YPK_2846 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YPK_2846 IPR005743 DNA gyrase, subunit A YPK_2846 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YPK_2846 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain YPK_2846 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YPK_2846 IPR013760 DNA topoisomerase, type IIA-like domain YPK_2846 IPR035516 YPK_2846 YPK_2847 IPR010233 Ubiquinone biosynthesis O-methyltransferase YPK_2847 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2848 IPR000788 Ribonucleotide reductase large subunit, C-terminal YPK_2848 IPR005144 ATP-cone YPK_2848 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YPK_2848 IPR013346 Ribonucleotide reductase, class I , alpha subunit YPK_2848 IPR013509 Ribonucleotide reductase large subunit, N-terminal YPK_2849 IPR000358 Ribonucleotide reductase small subunit YPK_2849 IPR009078 Ferritin-like superfamily YPK_2849 IPR012348 Ribonucleotide reductase-related YPK_2849 IPR030475 YPK_2849 YPK_2850 IPR001041 2Fe-2S ferredoxin-type domain YPK_2850 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPK_2850 IPR012675 Beta-grasp domain YPK_2850 IPR036010 YPK_2850 YPK_2851 IPR005658 Proteinase inhibitor I11, ecotin YPK_2851 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YPK_2851 IPR036198 YPK_2851 YPK_2852 IPR001453 Molybdopterin binding domain YPK_2852 IPR008135 Competence-induced protein CinA YPK_2852 IPR036425 YPK_2852 YPK_2853 IPR013059 Tryptophan/tyrosine transporter YPK_2853 IPR013061 Tryptophan/tryrosine permease, conserved site YPK_2853 IPR018227 Tryptophan/tyrosine permease YPK_2854 IPR009998 YfaZ YPK_2854 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YPK_2855 IPR010582 Catalase immune-responsive domain YPK_2855 IPR011614 Catalase core domain YPK_2855 IPR018028 Catalase, mono-functional, haem-containing YPK_2855 IPR020835 Catalase-like domain YPK_2855 IPR024708 Catalase active site YPK_2855 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 YPK_2855 IPR037060 YPK_2855 YPK_2856 IPR006554 Helicase-like, DEXD box c2 type YPK_2856 IPR006555 ATP-dependent helicase, C-terminal YPK_2856 IPR010614 DEAD2 YPK_2856 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_2856 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2856 IPR039000 YPK_2856 YPK_2857 IPR001702 Porin, Gram-negative type YPK_2857 IPR001897 Porin, gammaproteobacterial YPK_2857 IPR013793 Porin, Gram-negative type, conserved site YPK_2857 IPR023614 Porin domain YPK_2858 IPR000620 Drug/metabolite transporter YPK_2860 IPR000310 Orn/Lys/Arg decarboxylase, major domain YPK_2860 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal YPK_2860 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal YPK_2860 IPR011193 Ornithine/lysine/arginine decarboxylase YPK_2860 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2860 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2860 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2860 IPR036633 YPK_2860 YPK_2861 IPR002293 Amino acid/polyamine transporter I YPK_2862 IPR000515 MetI-like domain YPK_2862 IPR035906 YPK_2862 YPK_2863 IPR003439 ABC transporter-like YPK_2863 IPR003593 AAA+ ATPase domain YPK_2863 IPR017871 ABC transporter, conserved site YPK_2863 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2864 IPR000515 MetI-like domain YPK_2864 IPR035906 YPK_2864 YPK_2865 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain YPK_2866 IPR001307 Thiosulphate sulfurtransferase, conserved site YPK_2866 IPR001763 Rhodanese-like domain YPK_2866 IPR036873 YPK_2866 YPK_2867 IPR002129 Pyridoxal phosphate-dependent decarboxylase YPK_2867 IPR010977 Aromatic-L-amino-acid decarboxylase YPK_2867 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2867 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2867 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2868 IPR005123 Oxoglutarate/iron-dependent dioxygenase YPK_2868 IPR016946 Uncharacterised conserved protein UCP030125 YPK_2869 IPR003439 ABC transporter-like YPK_2869 IPR003593 AAA+ ATPase domain YPK_2869 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE YPK_2869 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2870 IPR003439 ABC transporter-like YPK_2870 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD YPK_2870 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2870 IPR032823 YPK_2870 YPK_2871 IPR001851 ABC transporter, permease YPK_2871 IPR017778 ABC transporter, urea, permease protein, UrtC YPK_2872 IPR001851 ABC transporter, permease YPK_2872 IPR011989 Armadillo-like helical YPK_2872 IPR016024 Armadillo-type fold YPK_2872 IPR017779 ABC transporter, urea, permease protein, UrtB YPK_2873 IPR000709 Leu/Ile/Val-binding protein YPK_2873 IPR017777 ABC transporter, urea, substrate-binding, UrtA YPK_2873 IPR028082 Periplasmic binding protein-like I YPK_2874 IPR009921 Domain of unknown function DUF1456 YPK_2875 IPR005769 ABC transporter, permease PhnE/PtxC YPK_2875 IPR035906 YPK_2875 YPK_2876 IPR000515 MetI-like domain YPK_2876 IPR005769 ABC transporter, permease PhnE/PtxC YPK_2876 IPR035906 YPK_2876 YPK_2877 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic protein YPK_2877 IPR017797 Phosphonate ABC transporter, periplasmic substrate-binding protein YPK_2878 IPR003439 ABC transporter-like YPK_2878 IPR003593 AAA+ ATPase domain YPK_2878 IPR012693 ABC transporter, phosphonate import, PhnC YPK_2878 IPR017871 ABC transporter, conserved site YPK_2878 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2879 IPR007341 Transglycosylase-associated protein YPK_2880 IPR020941 Suppressor of fused-like domain YPK_2881 IPR002711 HNH endonuclease YPK_2881 IPR003615 HNH nuclease YPK_2884 IPR006094 FAD linked oxidase, N-terminal YPK_2884 IPR012256 D-lactate dehydrogenase YPK_2884 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal YPK_2884 IPR016164 FAD-linked oxidase-like, C-terminal YPK_2884 IPR016167 FAD-binding, type 2, subdomain 1 YPK_2884 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_2884 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 YPK_2884 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 YPK_2884 IPR036318 YPK_2884 YPK_2885 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPK_2885 IPR012338 Beta-lactamase/transpeptidase-like YPK_2885 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPK_2887 IPR001269 tRNA-dihydrouridine synthase YPK_2887 IPR013785 Aldolase-type TIM barrel YPK_2887 IPR018517 tRNA-dihydrouridine synthase, conserved site YPK_2887 IPR032886 YPK_2887 YPK_2889 IPR002686 Transposase IS200-like YPK_2889 IPR036515 YPK_2889 YPK_2891 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPK_2891 IPR001650 Helicase, C-terminal YPK_2891 IPR011545 DEAD/DEAH box helicase domain YPK_2891 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2896 IPR038717 YPK_2896 YPK_2898 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPK_2898 IPR001650 Helicase, C-terminal YPK_2898 IPR011545 DEAD/DEAH box helicase domain YPK_2898 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_2898 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2898 IPR028622 ATP-dependent RNA helicase RhlE YPK_2899 IPR001647 DNA-binding HTH domain, TetR-type YPK_2899 IPR009057 Homeodomain-like YPK_2899 IPR015292 Transcription regulator YbiH, C-terminal YPK_2899 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPK_2899 IPR036271 YPK_2899 YPK_2900 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG YPK_2900 IPR032317 YPK_2900 YPK_2901 IPR003439 ABC transporter-like YPK_2901 IPR003593 AAA+ ATPase domain YPK_2901 IPR017871 ABC transporter, conserved site YPK_2901 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2903 IPR000412 ABC-2 transporter YPK_2904 IPR009799 EthD domain YPK_2904 IPR011008 Dimeric alpha-beta barrel YPK_2905 IPR000847 Transcription regulator HTH, LysR YPK_2905 IPR005119 LysR, substrate-binding YPK_2905 IPR036388 YPK_2905 YPK_2905 IPR036390 YPK_2905 YPK_2906 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal YPK_2906 IPR013785 Aldolase-type TIM barrel YPK_2907 IPR001789 Signal transduction response regulator, receiver domain YPK_2907 IPR002078 RNA polymerase sigma factor 54 interaction domain YPK_2907 IPR002197 DNA binding HTH domain, Fis-type YPK_2907 IPR003593 AAA+ ATPase domain YPK_2907 IPR009057 Homeodomain-like YPK_2907 IPR011006 CheY-like superfamily YPK_2907 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_2907 IPR025944 Sigma-54 interaction domain, conserved site YPK_2907 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2908 IPR000014 PAS domain YPK_2908 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_2908 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_2908 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_2908 IPR013767 PAS fold YPK_2908 IPR029151 Periplasmic sensor domain-like YPK_2908 IPR033463 YPK_2908 YPK_2908 IPR035965 YPK_2908 YPK_2908 IPR036097 YPK_2908 YPK_2908 IPR036890 YPK_2908 YPK_2909 IPR020365 Zinc resistance-associated protein, ZraP YPK_2909 IPR025961 Heavy-metal resistance protein YPK_2910 IPR004740 Nucleoside:H+ symporter YPK_2910 IPR036259 YPK_2910 YPK_2911 IPR000845 Nucleoside phosphorylase domain YPK_2911 IPR010943 Xanthosine phosphorylase YPK_2911 IPR011268 Purine nucleoside phosphorylase YPK_2911 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific YPK_2911 IPR035994 YPK_2911 YPK_2912 IPR000620 Drug/metabolite transporter YPK_2913 IPR000847 Transcription regulator HTH, LysR YPK_2913 IPR005119 LysR, substrate-binding YPK_2913 IPR036388 YPK_2913 YPK_2913 IPR036390 YPK_2913 YPK_2914 IPR000060 BCCT transporter family YPK_2914 IPR018093 BCCT transporter, conserved site YPK_2915 IPR001647 DNA-binding HTH domain, TetR-type YPK_2915 IPR009057 Homeodomain-like YPK_2915 IPR017757 Transcriptional repressor BetI YPK_2915 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPK_2915 IPR036271 YPK_2915 YPK_2915 IPR039538 YPK_2915 YPK_2916 IPR011264 NAD/NADP-dependent betaine aldehyde dehydrogenase YPK_2916 IPR015590 Aldehyde dehydrogenase domain YPK_2916 IPR016160 Aldehyde dehydrogenase, cysteine active site YPK_2916 IPR016161 Aldehyde/histidinol dehydrogenase YPK_2916 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_2916 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_2916 IPR029510 Aldehyde dehydrogenase, glutamic acid active site YPK_2917 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal YPK_2917 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal YPK_2917 IPR011533 Oxygen-dependent choline dehydrogenase YPK_2917 IPR012132 Glucose-methanol-choline oxidoreductase YPK_2917 IPR027424 Glucose Oxidase, domain 2 YPK_2917 IPR036188 YPK_2917 YPK_2918 IPR006214 Bax inhibitor 1-related YPK_2919 IPR003448 Molybdopterin biosynthesis MoaE YPK_2919 IPR036563 YPK_2919 YPK_2920 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 YPK_2920 IPR012675 Beta-grasp domain YPK_2920 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPK_2921 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain YPK_2921 IPR023045 Molybdenum cofactor biosynthesis C YPK_2921 IPR036522 YPK_2921 YPK_2922 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site YPK_2922 IPR006638 Elongator protein 3/MiaB/NifB YPK_2922 IPR007197 Radical SAM YPK_2922 IPR010505 Molybdenum cofactor synthesis C-terminal YPK_2922 IPR013483 Molybdenum cofactor biosynthesis protein A YPK_2922 IPR013785 Aldolase-type TIM barrel YPK_2924 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YPK_2924 IPR010119 Gluconeogenesis factor YPK_2924 IPR038136 YPK_2924 YPK_2925 IPR018668 Protein of unknown function DUF2132 YPK_2925 IPR036361 YPK_2925 YPK_2926 IPR001650 Helicase, C-terminal YPK_2926 IPR001943 UVR domain YPK_2926 IPR004807 UvrABC system, subunit B YPK_2926 IPR006935 Helicase/UvrB domain YPK_2926 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_2926 IPR024759 UvrB, YAD/RRR-motif-containing domain YPK_2926 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2926 IPR036876 YPK_2926 YPK_2927 IPR003439 ABC transporter-like YPK_2927 IPR003593 AAA+ ATPase domain YPK_2927 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2928 IPR004472 Dethiobiotin synthase BioD YPK_2928 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2929 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC YPK_2929 IPR013216 Methyltransferase type 11 YPK_2929 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_2930 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPK_2930 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type YPK_2930 IPR004839 Aminotransferase, class I/classII YPK_2930 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2930 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2930 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2930 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria YPK_2931 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB YPK_2931 IPR006638 Elongator protein 3/MiaB/NifB YPK_2931 IPR007197 Radical SAM YPK_2931 IPR010722 Biotin and thiamin synthesis-associated domain YPK_2931 IPR013785 Aldolase-type TIM barrel YPK_2931 IPR024177 Biotin synthase YPK_2932 IPR005814 Aminotransferase class-III YPK_2932 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA YPK_2932 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_2932 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_2932 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2933 IPR011045 Nitrous oxide reductase, N-terminal YPK_2933 IPR015943 WD40/YVTN repeat-like-containing domain YPK_2933 IPR019405 Lactonase, 7-bladed beta propeller YPK_2933 IPR022528 6-phosphogluconolactonase, YbhE-type YPK_2934 IPR000150 Cof protein YPK_2934 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPK_2934 IPR023214 HAD-like domain YPK_2934 IPR036412 YPK_2934 YPK_2935 IPR003439 ABC transporter-like YPK_2935 IPR003593 AAA+ ATPase domain YPK_2935 IPR004606 Molybdenum-pterin binding YPK_2935 IPR005116 Transport-associated OB, type 1 YPK_2935 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2935 IPR011868 Molybdate ABC transporter, ATP-binding protein YPK_2935 IPR017871 ABC transporter, conserved site YPK_2935 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2936 IPR000515 MetI-like domain YPK_2936 IPR011867 Molybdate ABC transporter, permease protein YPK_2936 IPR035906 YPK_2936 YPK_2937 IPR005950 Molybdenum ABC transporter, periplasmic binding protein YPK_2938 IPR019702 Protein of unknown function DUF2592 YPK_2939 IPR000847 Transcription regulator HTH, LysR YPK_2939 IPR003725 Molybdenum-binding protein, N-terminal YPK_2939 IPR004606 Molybdenum-pterin binding YPK_2939 IPR005116 Transport-associated OB, type 1 YPK_2939 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2939 IPR016462 Molybdate-dependent transcriptional regulator, ModE YPK_2939 IPR036388 YPK_2939 YPK_2939 IPR036390 YPK_2939 YPK_2940 IPR003439 ABC transporter-like YPK_2940 IPR003593 AAA+ ATPase domain YPK_2940 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2942 IPR003675 CAAX amino terminal protease YPK_2943 IPR005886 UDP-glucose 4-epimerase GalE YPK_2943 IPR016040 NAD(P)-binding domain YPK_2943 IPR036291 YPK_2943 YPK_2944 IPR001937 Galactose-1-phosphate uridyl transferase, class I YPK_2944 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal YPK_2944 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal YPK_2944 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site YPK_2944 IPR036265 YPK_2944 YPK_2945 IPR000705 Galactokinase YPK_2945 IPR006203 GHMP kinase, ATP-binding, conserved site YPK_2945 IPR006204 GHMP kinase N-terminal domain YPK_2945 IPR006206 Mevalonate/galactokinase YPK_2945 IPR013750 GHMP kinase, C-terminal domain YPK_2945 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_2945 IPR019539 Galactokinase galactose-binding domain YPK_2945 IPR019741 Galactokinase, conserved site YPK_2945 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2945 IPR022963 Galactokinase, bacterial YPK_2945 IPR036554 YPK_2945 YPK_2946 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase YPK_2946 IPR011013 Galactose mutarotase-like domain YPK_2946 IPR013458 Aldose 1-epimerase, bacterial YPK_2946 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup YPK_2946 IPR015443 Aldose 1-epimerase YPK_2946 IPR018052 Aldose 1-epimerase, conserved site YPK_2947 IPR011690 Phosphate-starvation-induced PsiF repeat YPK_2948 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPK_2948 IPR005952 Phosphoglycerate mutase 1 YPK_2948 IPR013078 Histidine phosphatase superfamily, clade-1 YPK_2948 IPR029033 Histidine phosphatase superfamily YPK_2949 IPR006218 DAHP synthetase I/KDSA YPK_2949 IPR006219 DHAP synthase, class 1 YPK_2949 IPR013785 Aldolase-type TIM barrel YPK_2951 IPR002524 Cation efflux protein YPK_2951 IPR023500 Zinc transporter ZitB YPK_2951 IPR027469 Cation efflux protein transmembrane domain YPK_2951 IPR036837 YPK_2951 YPK_2952 IPR006419 Nicotinamide mononucleotide transporter PnuC YPK_2953 IPR003473 Quinolinate synthetase A YPK_2953 IPR023513 Quinolinate synthase A, type 1 YPK_2953 IPR036094 YPK_2953 YPK_2954 IPR011990 Tetratricopeptide-like helical domain YPK_2954 IPR014162 Tol-Pal system, YbgF YPK_2954 IPR019734 Tetratricopeptide repeat YPK_2954 IPR032519 YPK_2954 YPK_2954 IPR034706 YPK_2954 YPK_2955 IPR006664 Outer membrane protein, bacterial YPK_2955 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_2955 IPR006690 Outer membrane protein, OmpA-like, conserved site YPK_2955 IPR014169 Peptidoglycan-associated lipoprotein YPK_2955 IPR036737 YPK_2955 YPK_2955 IPR039001 YPK_2955 YPK_2956 IPR007195 TolB, N-terminal YPK_2956 IPR011042 Six-bladed beta-propeller, TolB-like YPK_2956 IPR011659 WD40-like Beta Propeller YPK_2956 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB YPK_2956 IPR036752 YPK_2956 YPK_2957 IPR014161 Tol-Pal system, TolA YPK_2958 IPR003400 Biopolymer transport protein ExbD/TolR YPK_2958 IPR014168 Biopolymer transport, TolR YPK_2959 IPR002898 MotA/TolQ/ExbB proton channel YPK_2959 IPR014163 Tol-Pal system, TolQ YPK_2960 IPR006683 Thioesterase superfamily YPK_2960 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPK_2960 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase YPK_2960 IPR029069 HotDog domain YPK_2961 IPR011846 Cyd operon protein YbgE YPK_2962 IPR011724 Cyd operon protein YbgT YPK_2962 IPR012994 Membrane bound YbgT-like YPK_2963 IPR003317 Cytochrome d ubiquinol oxidase, subunit II YPK_2964 IPR002585 Cytochrome d ubiquinol oxidase, subunit I YPK_2965 IPR003781 CoA-binding YPK_2965 IPR005810 Succinyl-CoA ligase, alpha subunit YPK_2965 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPK_2965 IPR016102 Succinyl-CoA synthetase-like YPK_2965 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YPK_2965 IPR033847 YPK_2965 YPK_2965 IPR036291 YPK_2965 YPK_2966 IPR005809 Succinyl-CoA synthetase, beta subunit YPK_2966 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YPK_2966 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type YPK_2966 IPR013815 ATP-grasp fold, subdomain 1 YPK_2966 IPR016102 Succinyl-CoA synthetase-like YPK_2966 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site YPK_2967 IPR000089 Biotin/lipoyl attachment YPK_2967 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPK_2967 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPK_2967 IPR004167 E3 binding YPK_2967 IPR006255 Dihydrolipoamide succinyltransferase YPK_2967 IPR011053 Single hybrid motif YPK_2967 IPR023213 Chloramphenicol acetyltransferase-like domain YPK_2967 IPR036625 YPK_2967 YPK_2968 IPR001017 Dehydrogenase, E1 component YPK_2968 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_2968 IPR011603 2-oxoglutarate dehydrogenase E1 component YPK_2968 IPR029061 Thiamin diphosphate-binding fold YPK_2968 IPR031717 YPK_2968 YPK_2968 IPR032106 YPK_2968 YPK_2969 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPK_2969 IPR009051 Alpha-helical ferredoxin YPK_2969 IPR012675 Beta-grasp domain YPK_2969 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_2969 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPK_2969 IPR036010 YPK_2969 YPK_2970 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPK_2970 IPR003953 FAD binding domain YPK_2970 IPR011281 Succinate dehydrogenase, flavoprotein subunit YPK_2970 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPK_2970 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPK_2970 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain YPK_2970 IPR036188 YPK_2970 YPK_2970 IPR037099 YPK_2970 YPK_2971 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor YPK_2971 IPR034804 YPK_2971 YPK_2972 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit YPK_2972 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit YPK_2972 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site YPK_2972 IPR034804 YPK_2972 YPK_2973 IPR002020 Citrate synthase-like YPK_2973 IPR010953 Citrate synthase, type I YPK_2973 IPR016142 Citrate synthase-like, large alpha subdomain YPK_2973 IPR016143 Citrate synthase-like, small alpha subdomain YPK_2973 IPR019810 Citrate synthase active site YPK_2973 IPR024176 Citrate synthase, bacterial-type YPK_2973 IPR036969 YPK_2973 YPK_2974 IPR000740 GrpE nucleotide exchange factor YPK_2974 IPR009012 GrpE nucleotide exchange factor, head YPK_2974 IPR013805 GrpE nucleotide exchange factor, coiled-coil YPK_2975 IPR002504 Inorganic polyphosphate/ATP-NAD kinase YPK_2975 IPR016064 ATP-NAD kinase-like domain YPK_2975 IPR017437 ATP-NAD kinase, PpnK-type, all-beta YPK_2975 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 YPK_2976 IPR003395 RecF/RecN/SMC, N-terminal YPK_2976 IPR004604 DNA recombination/repair protein RecN YPK_2976 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2977 IPR007450 Lipoprotein SmpA/OmlA YPK_2977 IPR026592 Outer membrane protein assembly factor BamE YPK_2977 IPR037873 YPK_2977 YPK_2978 IPR005346 RnfH protein YPK_2978 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPK_2978 IPR037021 YPK_2978 YPK_2979 IPR005031 Streptomyces cyclase/dehydrase YPK_2979 IPR023393 START-like domain YPK_2980 IPR000037 SsrA-binding protein YPK_2980 IPR020081 SsrA-binding protein, conserved site YPK_2980 IPR023620 Small protein B YPK_2981 IPR010998 Integrase, Lambda-type, N-terminal YPK_2981 IPR025166 Domain of unknown function DUF4102 YPK_2981 IPR038488 YPK_2981 YPK_2982 IPR002514 Transposase IS3/IS911family YPK_2982 IPR009057 Homeodomain-like YPK_2986 IPR000073 Alpha/beta hydrolase fold-1 YPK_2986 IPR029058 Alpha/Beta hydrolase fold YPK_2989 IPR002145 Ribbon-helix-helix protein, copG YPK_2990 IPR001226 Flavodoxin, conserved site YPK_2990 IPR008254 Flavodoxin/nitric oxide synthase YPK_2990 IPR010086 Flavodoxin, long chain YPK_2990 IPR029039 Flavoprotein-like YPK_2991 IPR002481 Ferric-uptake regulator YPK_2991 IPR036388 YPK_2991 YPK_2991 IPR036390 YPK_2991 YPK_2992 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain YPK_2992 IPR004867 Chitobiase/beta-hexosaminidase C-terminal domain YPK_2992 IPR008965 Carbohydrate-binding domain YPK_2992 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain YPK_2992 IPR013783 Immunoglobulin-like fold YPK_2992 IPR014756 Immunoglobulin E-set YPK_2992 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal YPK_2992 IPR015883 Glycoside hydrolase family 20, catalytic core YPK_2992 IPR017853 Glycoside hydrolase, superfamily YPK_2992 IPR025705 Beta-hexosaminidase YPK_2992 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like YPK_2993 IPR005318 Outer membrane porin, bacterial YPK_2993 IPR023614 Porin domain YPK_2994 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPK_2994 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_2994 IPR004514 Glutamine-tRNA synthetase YPK_2994 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain YPK_2994 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2994 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain YPK_2994 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPK_2994 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain YPK_2994 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain YPK_2994 IPR022861 Glutamine-tRNA ligase, bacterial YPK_2995 IPR002686 Transposase IS200-like YPK_2995 IPR036515 YPK_2995 YPK_2996 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 YPK_2996 IPR001996 Phosphotransferase system, IIB component, type 1 YPK_2996 IPR003352 Phosphotransferase system, EIIC YPK_2996 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component YPK_2996 IPR011055 Duplicated hybrid motif YPK_2996 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site YPK_2996 IPR036878 YPK_2996 YPK_2997 IPR004547 Glucosamine-6-phosphate isomerase YPK_2997 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase YPK_2997 IPR018321 Glucosamine-6-phosphate isomerase, conserved site YPK_2997 IPR037171 YPK_2997 YPK_2998 IPR003764 N-acetylglucosamine-6-phosphate deacetylase YPK_2998 IPR006680 Amidohydrolase 1 YPK_2998 IPR011059 Metal-dependent hydrolase, composite domain YPK_2998 IPR032466 YPK_2998 YPK_2999 IPR000600 ROK YPK_2999 IPR000835 MarR-type HTH domain YPK_2999 IPR036388 YPK_2999 YPK_2999 IPR036390 YPK_2999 YPK_3000 IPR006357 HAD-superfamily hydrolase, subfamily IIA YPK_3000 IPR023214 HAD-like domain YPK_3000 IPR036412 YPK_3000 YPK_3001 IPR001962 Asparagine synthase YPK_3001 IPR006426 Asparagine synthase, glutamine-hydrolyzing YPK_3001 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3001 IPR017932 Glutamine amidotransferase type 2 domain YPK_3001 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_3004 IPR002938 Monooxygenase, FAD-binding YPK_3004 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 YPK_3004 IPR036188 YPK_3004 YPK_3005 IPR002792 TRAM domain YPK_3005 IPR005839 Methylthiotransferase YPK_3005 IPR006463 tRNA-i(6)A37 modification enzyme MiaB YPK_3005 IPR006638 Elongator protein 3/MiaB/NifB YPK_3005 IPR007197 Radical SAM YPK_3005 IPR013848 Methylthiotransferase, N-terminal YPK_3005 IPR020612 Methylthiotransferase, conserved site YPK_3005 IPR023404 Radical SAM, alpha/beta horseshoe YPK_3005 IPR038135 YPK_3005 YPK_3006 IPR003714 PhoH-like protein YPK_3006 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3007 IPR002036 Endoribonuclease YbeY YPK_3007 IPR020549 Endoribonuclease YbeY, conserved site YPK_3007 IPR023091 Metalloprotease catalytic domain, predicted YPK_3008 IPR000644 CBS domain YPK_3008 IPR005170 Transporter-associated domain YPK_3008 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_3008 IPR036318 YPK_3008 YPK_3009 IPR003010 Carbon-nitrogen hydrolase YPK_3009 IPR004563 Apolipoprotein N-acyltransferase YPK_3009 IPR036526 YPK_3009 YPK_3010 IPR001638 Extracellular solute-binding protein, family 3 YPK_3011 IPR000515 MetI-like domain YPK_3011 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_3011 IPR035906 YPK_3011 YPK_3012 IPR000515 MetI-like domain YPK_3012 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_3012 IPR035906 YPK_3012 YPK_3013 IPR003439 ABC transporter-like YPK_3013 IPR003593 AAA+ ATPase domain YPK_3013 IPR017871 ABC transporter, conserved site YPK_3013 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3013 IPR030679 YPK_3013 YPK_3014 IPR009912 Protein of unknown function DUF1451 YPK_3015 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_3015 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPK_3015 IPR002302 Leucine-tRNA ligase YPK_3015 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPK_3015 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPK_3015 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPK_3015 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3015 IPR025709 Leucyl-tRNA synthetase, editing domain YPK_3016 IPR007485 Lipopolysaccharide assembly, LptE YPK_3017 IPR005790 DNA polymerase III, delta subunit YPK_3017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPK_3017 IPR010372 DNA polymerase III, delta YPK_3017 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3017 IPR032780 YPK_3017 YPK_3018 IPR004821 Cytidyltransferase-like domain YPK_3018 IPR005248 Probable nicotinate-nucleotide adenylyltransferase YPK_3018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3019 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YPK_3020 IPR003742 SPOUT methyltransferase, predicted YPK_3020 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_3020 IPR029028 Alpha/beta knot methyltransferases YPK_3021 IPR001460 Penicillin-binding protein, transpeptidase YPK_3021 IPR005311 Penicillin-binding protein, dimerisation domain YPK_3021 IPR012338 Beta-lactamase/transpeptidase-like YPK_3021 IPR017790 Penicillin-binding protein 2 YPK_3021 IPR036138 YPK_3021 YPK_3022 IPR001182 Cell cycle protein FtsW/RodA YPK_3022 IPR011923 Rod shape-determining protein RodA YPK_3022 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPK_3023 IPR007730 Sporulation-related domain YPK_3023 IPR009009 RlpA-like double-psi beta-barrel domain YPK_3023 IPR012997 Rare lipoprotein A, bacterial YPK_3023 IPR034718 YPK_3023 YPK_3023 IPR036680 YPK_3023 YPK_3023 IPR036908 YPK_3023 YPK_3024 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YPK_3024 IPR012338 Beta-lactamase/transpeptidase-like YPK_3024 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YPK_3024 IPR015956 Penicillin-binding protein-associated YPK_3024 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YPK_3024 IPR037167 YPK_3024 YPK_3025 IPR007454 Uncharacterised protein family UPF0250 YPK_3025 IPR027471 YbeD-like domain YPK_3026 IPR000544 Octanoyltransferase YPK_3026 IPR004143 Biotin/lipoate A/B protein ligase YPK_3026 IPR020605 Octanoyltransferase, conserved site YPK_3027 IPR003698 Lipoyl synthase YPK_3027 IPR006638 Elongator protein 3/MiaB/NifB YPK_3027 IPR007197 Radical SAM YPK_3027 IPR013785 Aldolase-type TIM barrel YPK_3027 IPR031691 YPK_3027 YPK_3028 IPR003369 Sec-independent protein translocase protein TatA/B/E YPK_3028 IPR006312 Sec-independent protein translocase protein TatA/E YPK_3028 IPR024905 Sec-independent protein translocase protein TatE YPK_3030 IPR003691 Putative fluoride ion transporter CrcB YPK_3031 IPR002059 Cold-shock protein, DNA-binding YPK_3031 IPR011129 Cold shock protein YPK_3031 IPR012156 Cold shock, CspA YPK_3031 IPR012340 Nucleic acid-binding, OB-fold YPK_3031 IPR019844 Cold-shock conserved site YPK_3032 IPR002059 Cold-shock protein, DNA-binding YPK_3032 IPR012340 Nucleic acid-binding, OB-fold YPK_3033 IPR000792 Transcription regulator LuxR, C-terminal YPK_3033 IPR016032 Signal transduction response regulator, C-terminal effector YPK_3033 IPR036388 YPK_3033 YPK_3035 IPR015065 Glycogen synthesis protein YPK_3035 IPR036745 YPK_3035 YPK_3036 IPR007138 Antibiotic biosynthesis monooxygenase-like domain YPK_3036 IPR011008 Dimeric alpha-beta barrel YPK_3037 IPR003439 ABC transporter-like YPK_3037 IPR003593 AAA+ ATPase domain YPK_3037 IPR011527 ABC transporter type 1, transmembrane domain YPK_3037 IPR017871 ABC transporter, conserved site YPK_3037 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3037 IPR036640 YPK_3037 YPK_3039 IPR011051 RmlC-like cupin domain YPK_3039 IPR014710 RmlC-like jelly roll fold YPK_3039 IPR021120 KduI/IolB isomerase YPK_3039 IPR024203 5-deoxy-glucuronate isomerase, IolB YPK_3040 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_3040 IPR030823 YPK_3040 YPK_3040 IPR036237 YPK_3040 YPK_3041 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPK_3041 IPR011611 Carbohydrate kinase PfkB YPK_3041 IPR013785 Aldolase-type TIM barrel YPK_3041 IPR018659 Protein of unknown function DUF2090 YPK_3041 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain YPK_3041 IPR029056 Ribokinase-like YPK_3041 IPR030830 YPK_3041 YPK_3042 IPR000683 Oxidoreductase, N-terminal YPK_3042 IPR004104 Oxidoreductase, C-terminal YPK_3042 IPR036291 YPK_3042 YPK_3043 IPR001851 ABC transporter, permease YPK_3044 IPR003439 ABC transporter-like YPK_3044 IPR003593 AAA+ ATPase domain YPK_3044 IPR017871 ABC transporter, conserved site YPK_3044 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3045 IPR025997 Periplasmic binding protein domain YPK_3045 IPR028082 Periplasmic binding protein-like I YPK_3046 IPR000683 Oxidoreductase, N-terminal YPK_3046 IPR004104 Oxidoreductase, C-terminal YPK_3046 IPR030827 YPK_3046 YPK_3046 IPR036291 YPK_3046 YPK_3048 IPR000399 TPP-binding enzyme, conserved site YPK_3048 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPK_3048 IPR012000 Thiamine pyrophosphate enzyme, central domain YPK_3048 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPK_3048 IPR029035 DHS-like NAD/FAD-binding domain YPK_3048 IPR029061 Thiamin diphosphate-binding fold YPK_3048 IPR030817 YPK_3048 YPK_3049 IPR010061 Methylmalonate-semialdehyde dehydrogenase YPK_3049 IPR015590 Aldehyde dehydrogenase domain YPK_3049 IPR016160 Aldehyde dehydrogenase, cysteine active site YPK_3049 IPR016161 Aldehyde/histidinol dehydrogenase YPK_3049 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_3049 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_3051 IPR000281 Helix-turn-helix protein RpiR YPK_3051 IPR001347 Sugar isomerase (SIS) YPK_3051 IPR009057 Homeodomain-like YPK_3051 IPR036388 YPK_3051 YPK_3053 IPR001599 Alpha-2-macroglobulin YPK_3053 IPR002890 Alpha-2-macroglobulin, N-terminal YPK_3053 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YPK_3053 IPR011625 Alpha-2-macroglobulin, N-terminal 2 YPK_3054 IPR001264 Glycosyl transferase, family 51 YPK_3054 IPR001460 Penicillin-binding protein, transpeptidase YPK_3054 IPR009647 Penicillin-binding, C-terminal YPK_3054 IPR011815 Penicillin-binding protein 1C YPK_3054 IPR012338 Beta-lactamase/transpeptidase-like YPK_3054 IPR023346 Lysozyme-like domain YPK_3054 IPR036950 YPK_3054 YPK_3055 IPR010982 Lambda repressor-like, DNA-binding domain YPK_3055 IPR038722 YPK_3055 YPK_3058 IPR010665 Protein of unknown function DUF1240 YPK_3059 IPR010665 Protein of unknown function DUF1240 YPK_3060 IPR008514 Type VI secretion system effector, Hcp YPK_3060 IPR036624 YPK_3060 YPK_3064 IPR003991 Pertactin virulence factor family YPK_3064 IPR004899 Pertactin, central region YPK_3064 IPR005546 Autotransporter beta-domain YPK_3064 IPR006315 Outer membrane autotransporter barrel YPK_3064 IPR011050 Pectin lyase fold/virulence factor YPK_3064 IPR012332 P22 tailspike C-terminal domain-like YPK_3064 IPR036709 YPK_3064 YPK_3067 IPR003347 JmjC domain YPK_3068 IPR001207 Transposase, mutator type YPK_3069 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F YPK_3069 IPR002942 RNA-binding S4 domain YPK_3069 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPK_3069 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site YPK_3069 IPR020103 Pseudouridine synthase, catalytic domain YPK_3069 IPR036986 YPK_3069 YPK_3070 IPR018677 Protein of unknown function DUF2157, membrane YPK_3070 IPR025513 Domain of unknown function DUF4401 YPK_3071 IPR025833 GDYXXLXY protein YPK_3072 IPR001764 Glycoside hydrolase, family 3, N-terminal YPK_3072 IPR002772 Glycoside hydrolase family 3 C-terminal domain YPK_3072 IPR013783 Immunoglobulin-like fold YPK_3072 IPR017853 Glycoside hydrolase, superfamily YPK_3072 IPR019800 Glycoside hydrolase, family 3, active site YPK_3072 IPR026891 Fibronectin type III-like domain YPK_3072 IPR036881 YPK_3072 YPK_3072 IPR036962 YPK_3072 YPK_3075 IPR018170 Aldo/keto reductase, conserved site YPK_3075 IPR020471 Aldo/keto reductase subgroup YPK_3075 IPR023210 NADP-dependent oxidoreductase domain YPK_3075 IPR036812 YPK_3075 YPK_3076 IPR023210 NADP-dependent oxidoreductase domain YPK_3076 IPR036812 YPK_3076 YPK_3077 IPR000847 Transcription regulator HTH, LysR YPK_3077 IPR005119 LysR, substrate-binding YPK_3077 IPR036388 YPK_3077 YPK_3077 IPR036390 YPK_3077 YPK_3080 IPR000340 Dual specificity phosphatase, catalytic domain YPK_3080 IPR003595 Protein-tyrosine phosphatase, catalytic YPK_3080 IPR020422 Dual specificity phosphatase, subgroup, catalytic domain YPK_3080 IPR026841 YPK_3080 YPK_3080 IPR029021 Protein-tyrosine phosphatase-like YPK_3081 IPR022742 Putative lysophospholipase YPK_3081 IPR022744 Methyltransferase domain, putative YPK_3081 IPR029058 Alpha/Beta hydrolase fold YPK_3081 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3082 IPR002123 Phospholipid/glycerol acyltransferase YPK_3083 IPR000374 Phosphatidate cytidylyltransferase YPK_3084 IPR000462 CDP-alcohol phosphatidyltransferase YPK_3086 IPR038522 YPK_3086 YPK_3091 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_3094 IPR013783 Immunoglobulin-like fold YPK_3094 IPR015406 Domain of unknown function DUF1983 YPK_3094 IPR036116 YPK_3094 YPK_3098 IPR000064 Endopeptidase, NLPC/P60 domain YPK_3098 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain YPK_3098 IPR028090 JAB domain, prokaryotic YPK_3098 IPR038765 YPK_3098 YPK_3099 IPR006487 Bacteriophage lambda, GpL, minor tail YPK_3100 IPR010265 Bacteriophage lambda, GpM, minor tail YPK_3101 IPR000655 Regulatory protein cro YPK_3101 IPR010982 Lambda repressor-like, DNA-binding domain YPK_3101 IPR038202 YPK_3101 YPK_3102 IPR001387 Cro/C1-type helix-turn-helix domain YPK_3102 IPR010982 Lambda repressor-like, DNA-binding domain YPK_3102 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_3102 IPR036286 YPK_3102 YPK_3105 IPR029060 PIN domain-like YPK_3106 IPR024493 Protein of unknown function DUF2767 YPK_3107 IPR002104 Integrase, catalytic YPK_3107 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_3107 IPR013762 Integrase-like, catalytic core YPK_3108 IPR010391 DNA damage-inducible protein DinI-like YPK_3108 IPR036687 YPK_3108 YPK_3109 IPR010391 DNA damage-inducible protein DinI-like YPK_3109 IPR036687 YPK_3109 YPK_3110 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_3112 IPR018755 Bacteriophage Mu, Gp48 YPK_3113 IPR006949 Baseplate assembly protein J-like, predicted YPK_3114 IPR010877 Bacteriophage Mu, Gp46 YPK_3115 IPR014462 Bacteriophage Mu, Gp45 YPK_3116 IPR023399 Baseplate-like protein, two-layer sandwich domain YPK_3116 IPR026276 Baseplate protein GpP YPK_3117 IPR009826 DNA circulation, N-terminal YPK_3120 IPR019289 Bacteriophage tail protein Gp41, putative YPK_3121 IPR019596 Bacteriophage Mu, GpM, tail tube YPK_3122 IPR020287 Tail sheath protein, C-terminal domain YPK_3122 IPR035089 YPK_3122 YPK_3125 IPR005564 Major head protein GpE YPK_3126 IPR003222 Antitermination protein YPK_3128 IPR002104 Integrase, catalytic YPK_3128 IPR010998 Integrase, Lambda-type, N-terminal YPK_3128 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_3128 IPR013762 Integrase-like, catalytic core YPK_3129 IPR031339 YPK_3129 YPK_3131 IPR009610 Protein of unknown function DUF1219 YPK_3132 IPR009320 YagB/YeeU/YfjZ YPK_3132 IPR038025 YPK_3132 YPK_3133 IPR001405 RadC protein YPK_3133 IPR020891 Uncharacterised protein family UPF0758, conserved site YPK_3133 IPR025657 RadC-like JAB domain YPK_3134 IPR026325 Protein of unknown function DUF932 YPK_3137 IPR006073 GTP binding domain YPK_3137 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3140 IPR010260 Bacteriophage P4, Orf88 YPK_3142 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain YPK_3142 IPR035897 YPK_3142 YPK_3143 IPR003615 HNH nuclease YPK_3144 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3144 IPR038729 YPK_3144 YPK_3145 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3147 IPR011990 Tetratricopeptide-like helical domain YPK_3149 IPR002104 Integrase, catalytic YPK_3149 IPR010998 Integrase, Lambda-type, N-terminal YPK_3149 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_3149 IPR013762 Integrase-like, catalytic core YPK_3149 IPR025166 Domain of unknown function DUF4102 YPK_3149 IPR038488 YPK_3149 YPK_3150 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase YPK_3150 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPK_3150 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPK_3150 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YPK_3150 IPR036291 YPK_3150 YPK_3151 IPR036986 YPK_3151 YPK_3152 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPK_3152 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3152 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR YPK_3152 IPR015803 Cysteine-tRNA ligase YPK_3152 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase YPK_3152 IPR032678 YPK_3152 YPK_3153 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain YPK_3153 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YPK_3153 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase YPK_3153 IPR029000 Cyclophilin-like domain YPK_3154 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPK_3154 IPR010138 UDP-2,3-diacylglucosamine hydrolase YPK_3154 IPR029052 Metallo-dependent phosphatase-like YPK_3155 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain YPK_3155 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE YPK_3155 IPR033747 YPK_3155 YPK_3155 IPR035893 YPK_3155 YPK_3156 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPK_3156 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit YPK_3156 IPR011054 Rudiment single hybrid motif YPK_3156 IPR013815 ATP-grasp fold, subdomain 1 YPK_3156 IPR016185 Pre-ATP-grasp domain YPK_3157 IPR003838 Permease FtsX-like YPK_3158 IPR003439 ABC transporter-like YPK_3158 IPR003593 AAA+ ATPase domain YPK_3158 IPR017871 ABC transporter, conserved site YPK_3158 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3159 IPR008265 Lipase, GDSL, active site YPK_3159 IPR013830 YPK_3159 YPK_3159 IPR036514 YPK_3159 YPK_3160 IPR002347 Glucose/ribitol dehydrogenase YPK_3160 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_3160 IPR036291 YPK_3160 YPK_3161 IPR011990 Tetratricopeptide-like helical domain YPK_3161 IPR013766 Thioredoxin domain YPK_3161 IPR036249 YPK_3161 YPK_3162 IPR001107 Band 7 protein YPK_3162 IPR001972 Stomatin family YPK_3162 IPR018080 Band 7/stomatin-like, conserved site YPK_3162 IPR036013 YPK_3162 YPK_3163 IPR002810 NfeD-like, C-terminal domain YPK_3164 IPR000551 MerR-type HTH domain YPK_3164 IPR009061 DNA binding domain, putative YPK_3164 IPR011789 Cu(I)-responsive transcriptional regulator YPK_3165 IPR001757 Cation-transporting P-type ATPase YPK_3165 IPR006121 Heavy metal-associated domain, HMA YPK_3165 IPR008250 P-type ATPase, A domain YPK_3165 IPR017969 Heavy-metal-associated, conserved site YPK_3165 IPR018303 P-type ATPase, phosphorylation site YPK_3165 IPR023214 HAD-like domain YPK_3165 IPR023298 P-type ATPase, transmembrane domain YPK_3165 IPR023299 P-type ATPase, cytoplasmic domain N YPK_3165 IPR027256 Cation-transporting P-type ATPase, subfamily IB YPK_3165 IPR036163 YPK_3165 YPK_3165 IPR036412 YPK_3165 YPK_3166 IPR002816 Pheromone shutdown, TraB YPK_3167 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YPK_3167 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain YPK_3167 IPR036754 YPK_3167 YPK_3172 IPR011701 Major facilitator superfamily YPK_3172 IPR036259 YPK_3172 YPK_3173 IPR002686 Transposase IS200-like YPK_3173 IPR036515 YPK_3173 YPK_3174 IPR011701 Major facilitator superfamily YPK_3174 IPR036259 YPK_3174 YPK_3175 IPR003148 Regulator of K+ conductance, N-terminal YPK_3175 IPR004771 K+/H+ exchanger YPK_3175 IPR006153 Cation/H+ exchanger YPK_3175 IPR036291 YPK_3175 YPK_3175 IPR038770 YPK_3175 YPK_3176 IPR011611 Carbohydrate kinase PfkB YPK_3176 IPR029056 Ribokinase-like YPK_3177 IPR003856 Lipopolysaccharide biosynthesis YPK_3178 IPR005841 Alpha-D-phosphohexomutase superfamily YPK_3178 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPK_3178 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPK_3178 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPK_3178 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPK_3178 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPK_3178 IPR016066 Alpha-D-phosphohexomutase, conserved site YPK_3178 IPR036900 YPK_3178 YPK_3179 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_3179 IPR036291 YPK_3179 YPK_3180 IPR001173 Glycosyltransferase 2-like YPK_3180 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3181 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal YPK_3181 IPR005835 Nucleotidyl transferase YPK_3181 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YPK_3181 IPR011051 RmlC-like cupin domain YPK_3181 IPR014710 RmlC-like jelly roll fold YPK_3181 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3182 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_3182 IPR028614 GDP-L-fucose synthase YPK_3182 IPR036291 YPK_3182 YPK_3183 IPR006368 GDP-mannose 4,6-dehydratase YPK_3183 IPR016040 NAD(P)-binding domain YPK_3183 IPR036291 YPK_3183 YPK_3184 IPR001296 Glycosyl transferase, family 1 YPK_3184 IPR028098 Glycosyltransferase subfamily 4, N-terminal domain YPK_3186 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain YPK_3187 IPR001173 Glycosyltransferase 2-like YPK_3187 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3188 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_3188 IPR036291 YPK_3188 YPK_3189 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_3189 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_3189 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_3189 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3190 IPR013445 CDP-glucose 4,6-dehydratase YPK_3190 IPR016040 NAD(P)-binding domain YPK_3190 IPR036291 YPK_3190 YPK_3191 IPR005835 Nucleotidyl transferase YPK_3191 IPR013446 Glucose-1-phosphate cytidylyltransferase YPK_3191 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3192 IPR001041 2Fe-2S ferredoxin-type domain YPK_3192 IPR001221 Phenol hydroxylase reductase YPK_3192 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPK_3192 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPK_3192 IPR008333 Oxidoreductase, FAD-binding domain YPK_3192 IPR012675 Beta-grasp domain YPK_3192 IPR017938 Riboflavin synthase-like beta-barrel YPK_3192 IPR036010 YPK_3192 YPK_3192 IPR039261 YPK_3192 YPK_3193 IPR001015 Ferrochelatase YPK_3193 IPR019772 Ferrochelatase, active site YPK_3194 IPR000850 Adenylate kinase/UMP-CMP kinase YPK_3194 IPR006259 Adenylate kinase subfamily YPK_3194 IPR007862 Adenylate kinase, active site lid domain YPK_3194 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3194 IPR033690 YPK_3194 YPK_3195 IPR001404 Heat shock protein Hsp90 family YPK_3195 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_3195 IPR019805 Heat shock protein Hsp90, conserved site YPK_3195 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3195 IPR020575 Heat shock protein Hsp90, N-terminal YPK_3195 IPR036890 YPK_3195 YPK_3195 IPR037196 YPK_3195 YPK_3196 IPR000093 DNA recombination protein RecR YPK_3196 IPR006171 Toprim domain YPK_3196 IPR015967 Recombination protein RecR, conserved site YPK_3196 IPR023627 Recombination protein RecR YPK_3196 IPR023628 Recombination protein RecR, C4-type zinc finger YPK_3197 IPR004401 Nucleoid-associated protein YbaB YPK_3197 IPR036894 YPK_3197 YPK_3198 IPR001270 ClpA/B family YPK_3198 IPR003593 AAA+ ATPase domain YPK_3198 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YPK_3198 IPR012763 DNA polymerase III, subunit gamma/ tau YPK_3198 IPR021029 DNA polymerase III, tau subunit, domain V YPK_3198 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV YPK_3198 IPR022754 DNA polymerase III, gamma subunit, domain III YPK_3198 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3198 IPR038249 YPK_3198 YPK_3199 IPR000836 Phosphoribosyltransferase domain YPK_3199 IPR005764 Adenine phosphoribosyl transferase YPK_3199 IPR029057 Phosphoribosyltransferase-like YPK_3202 IPR010890 Primosomal replication PriB/PriC YPK_3202 IPR038338 YPK_3202 YPK_3203 IPR019630 Protein of unknown function DUF2496, YbaM-related YPK_3204 IPR006685 Mechanosensitive ion channel MscS YPK_3204 IPR006686 Mechanosensitive ion channel MscS, conserved site YPK_3204 IPR010920 Like-Sm (LSM) domain YPK_3204 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPK_3204 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPK_3204 IPR023408 YPK_3204 YPK_3204 IPR024393 Mechanosensitive ion channel MscS, porin domain YPK_3204 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPK_3205 IPR003787 Sulphur relay, DsrE/F-like protein YPK_3205 IPR027396 DsrEFH-like YPK_3206 IPR001647 DNA-binding HTH domain, TetR-type YPK_3206 IPR009057 Homeodomain-like YPK_3206 IPR013572 Transcription regulator MAATS, C-terminal YPK_3206 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPK_3206 IPR036271 YPK_3206 YPK_3207 IPR006143 RND efflux pump, membrane fusion protein YPK_3207 IPR032317 YPK_3207 YPK_3208 IPR001036 Acriflavin resistance protein YPK_3208 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPK_3208 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3209 IPR002686 Transposase IS200-like YPK_3209 IPR036515 YPK_3209 YPK_3210 IPR002150 Ribosomal protein L31 YPK_3210 IPR027493 Ribosomal protein L31 type B YPK_3210 IPR034704 YPK_3210 YPK_3211 IPR000473 Ribosomal protein L36 YPK_3211 IPR035977 YPK_3211 YPK_3213 IPR019693 Biofilm formation regulator YbaJ YPK_3214 IPR007985 Haemolysin expression modulating, HHA YPK_3214 IPR036666 YPK_3214 YPK_3215 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPK_3215 IPR036217 YPK_3215 YPK_3215 IPR036388 YPK_3215 YPK_3216 IPR039366 YPK_3216 YPK_3217 IPR003703 Acyl-CoA thioesterase YPK_3217 IPR029069 HotDog domain YPK_3219 IPR001905 Ammonium transporter YPK_3219 IPR018047 Ammonium transporter, conserved site YPK_3219 IPR024041 Ammonium transporter AmtB-like domain YPK_3219 IPR029020 Ammonium/urea transporter YPK_3220 IPR002187 Nitrogen regulatory protein PII YPK_3220 IPR002332 Nitrogen regulatory protein P-II, urydylation site YPK_3220 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPK_3220 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPK_3220 IPR017918 Nitrogen regulatory protein PII, conserved site YPK_3221 IPR003439 ABC transporter-like YPK_3221 IPR003593 AAA+ ATPase domain YPK_3221 IPR011527 ABC transporter type 1, transmembrane domain YPK_3221 IPR017871 ABC transporter, conserved site YPK_3221 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3221 IPR036640 YPK_3221 YPK_3222 IPR003439 ABC transporter-like YPK_3222 IPR003593 AAA+ ATPase domain YPK_3222 IPR011527 ABC transporter type 1, transmembrane domain YPK_3222 IPR017871 ABC transporter, conserved site YPK_3222 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3222 IPR036640 YPK_3222 YPK_3223 IPR000485 AsnC-type HTH domain YPK_3223 IPR011008 Dimeric alpha-beta barrel YPK_3223 IPR019887 Transcription regulator AsnC-type, C-terminal YPK_3223 IPR019888 Transcription regulator AsnC-type YPK_3223 IPR036388 YPK_3223 YPK_3223 IPR036390 YPK_3223 YPK_3224 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_3224 IPR036052 YPK_3224 YPK_3225 IPR000150 Cof protein YPK_3225 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPK_3225 IPR023214 HAD-like domain YPK_3225 IPR023938 HMP-PP phosphatase YPK_3225 IPR036412 YPK_3225 YPK_3226 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_3226 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPK_3227 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3227 IPR018317 Queuosine biosynthesis protein QueC YPK_3228 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family YPK_3228 IPR029069 HotDog domain YPK_3229 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YPK_3229 IPR010994 RuvA domain 2-like YPK_3230 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPK_3230 IPR027304 Trigger factor/SurA domain YPK_3231 IPR000119 Histone-like bacterial DNA-binding protein YPK_3231 IPR010992 Integration host factor (IHF)-like DNA-binding domain YPK_3231 IPR020816 Histone-like DNA-binding protein, conserved site YPK_3232 IPR003111 Peptidase S16, lon N-terminal YPK_3232 IPR003593 AAA+ ATPase domain YPK_3232 IPR003959 ATPase, AAA-type, core YPK_3232 IPR004815 Lon protease, bacterial/eukaryotic-type YPK_3232 IPR008268 Peptidase S16, active site YPK_3232 IPR008269 Peptidase S16, Lon C-terminal YPK_3232 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3232 IPR015947 PUA-like domain YPK_3232 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3232 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3232 IPR027543 Lon protease, bacterial YPK_3233 IPR003593 AAA+ ATPase domain YPK_3233 IPR003959 ATPase, AAA-type, core YPK_3233 IPR004487 Clp protease, ATP-binding subunit ClpX YPK_3233 IPR010603 Zinc finger, ClpX C4-type YPK_3233 IPR019489 Clp ATPase, C-terminal YPK_3233 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3233 IPR038366 YPK_3233 YPK_3234 IPR001907 ATP-dependent Clp protease proteolytic subunit YPK_3234 IPR018215 ClpP, active site YPK_3234 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YPK_3234 IPR029045 ClpP/crotonase-like domain YPK_3234 IPR033135 YPK_3234 YPK_3235 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPK_3235 IPR005215 Trigger factor YPK_3235 IPR008880 Trigger factor, C-terminal domain YPK_3235 IPR008881 Trigger factor, ribosome-binding, bacterial YPK_3235 IPR027304 Trigger factor/SurA domain YPK_3235 IPR036611 YPK_3235 YPK_3235 IPR037041 YPK_3235 YPK_3237 IPR002634 BolA protein YPK_3237 IPR036065 YPK_3237 YPK_3238 IPR005619 Uncharacterised protein family, YajG YPK_3238 IPR012640 Membrane lipoprotein, lipid attachment site YPK_3239 IPR011701 Major facilitator superfamily YPK_3239 IPR036259 YPK_3239 YPK_3241 IPR006333 Cytochrome o ubiquinol oxidase subunit II YPK_3241 IPR008972 Cupredoxin YPK_3241 IPR010514 COX aromatic rich motif YPK_3241 IPR036257 YPK_3241 YPK_3242 IPR000883 Cytochrome c oxidase subunit I YPK_3242 IPR014207 Cytochrome o ubiquinol oxidase, subunit I YPK_3242 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site YPK_3242 IPR036927 YPK_3242 YPK_3243 IPR000298 Cytochrome c oxidase subunit III domain YPK_3243 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle YPK_3243 IPR014206 Cytochrome o ubiquinol oxidase, subunit III YPK_3243 IPR035973 YPK_3243 YPK_3244 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes YPK_3244 IPR014210 Cytochrome o ubiquinol oxidase subunit IV YPK_3245 IPR000537 UbiA prenyltransferase family YPK_3245 IPR006369 Protohaem IX farnesyltransferase YPK_3245 IPR030470 YPK_3245 YPK_3246 IPR011701 Major facilitator superfamily YPK_3246 IPR036259 YPK_3246 YPK_3247 IPR007551 Protein of unknown function DUF520 YPK_3247 IPR035570 YPK_3247 YPK_3247 IPR035571 YPK_3247 YPK_3247 IPR036183 YPK_3247 YPK_3248 IPR003710 Ketopantoate reductase ApbA/PanE YPK_3248 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_3248 IPR013328 Dehydrogenase, multihelical YPK_3248 IPR013332 Ketopantoate reductase, N-terminal domain YPK_3248 IPR013752 Ketopantoate reductase, C-terminal domain YPK_3248 IPR036291 YPK_3248 YPK_3249 IPR002818 ThiJ/PfpI YPK_3249 IPR006287 DJ-1 YPK_3249 IPR029062 Class I glutamine amidotransferase-like YPK_3250 IPR003720 tRNA sulfurtransferase ThiI YPK_3250 IPR004114 THUMP YPK_3250 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3250 IPR020536 Thil, AANH domain YPK_3250 IPR026340 Thiazole biosynthesis domain YPK_3250 IPR036873 YPK_3250 YPK_3251 IPR003761 Exonuclease VII, small subunit YPK_3251 IPR037004 YPK_3251 YPK_3252 IPR000092 Polyprenyl synthetase YPK_3252 IPR008949 Terpenoid synthase YPK_3252 IPR033749 YPK_3252 YPK_3253 IPR005474 Transketolase, N-terminal YPK_3253 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_3253 IPR005477 Deoxyxylulose-5-phosphate synthase YPK_3253 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPK_3253 IPR020826 Transketolase binding site YPK_3253 IPR029061 Thiamin diphosphate-binding fold YPK_3253 IPR033248 YPK_3253 YPK_3254 IPR007686 YutG/PgpA domain YPK_3254 IPR026037 Phosphatidylglycerophosphatase A YPK_3254 IPR036681 YPK_3254 YPK_3255 IPR006283 Thiamine-monophosphate kinase YPK_3255 IPR010918 AIR synthase-related protein, C-terminal domain YPK_3255 IPR016188 PurM, N-terminal-like YPK_3255 IPR036676 YPK_3255 YPK_3255 IPR036921 YPK_3255 YPK_3256 IPR006027 NusB/RsmB/TIM44 YPK_3256 IPR011605 NusB antitermination factor YPK_3256 IPR035926 YPK_3256 YPK_3257 IPR002180 6,7-dimethyl-8-ribityllumazine synthase YPK_3257 IPR034964 YPK_3257 YPK_3257 IPR036467 YPK_3257 YPK_3258 IPR002125 CMP/dCMP deaminase, zinc-binding YPK_3258 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal YPK_3258 IPR004794 Riboflavin biosynthesis protein RibD YPK_3258 IPR011549 Riboflavin-specific deaminase, C-terminal YPK_3258 IPR016192 APOBEC/CMP deaminase, zinc-binding YPK_3258 IPR016193 Cytidine deaminase-like YPK_3258 IPR024072 Dihydrofolate reductase-like domain YPK_3259 IPR003796 Ribonucleotide reductase regulator NrdR-like YPK_3259 IPR005144 ATP-cone YPK_3261 IPR005665 Protein-export membrane protein SecF, bacterial YPK_3261 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPK_3261 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPK_3261 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPK_3262 IPR005791 Protein translocase subunit SecD YPK_3262 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPK_3262 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPK_3262 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPK_3262 IPR027398 SecD export protein N-terminal TM domain YPK_3263 IPR003849 Preprotein translocase YajC YPK_3264 IPR002616 tRNA-guanine(15) transglycosylase-like YPK_3264 IPR004803 Queuine tRNA-ribosyltransferase YPK_3264 IPR036511 YPK_3264 YPK_3265 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA YPK_3265 IPR036100 YPK_3265 YPK_3266 IPR007431 Acyl carrier protein phosphodiesterase YPK_3266 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria YPK_3267 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YPK_3267 IPR019479 Peroxiredoxin, C-terminal YPK_3267 IPR024706 Peroxiredoxin, AhpC-type YPK_3267 IPR036249 YPK_3267 YPK_3269 IPR000101 Gamma-glutamyltranspeptidase YPK_3269 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_3270 IPR002347 Glucose/ribitol dehydrogenase YPK_3270 IPR036291 YPK_3270 YPK_3271 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain YPK_3271 IPR006047 Glycosyl hydrolase, family 13, catalytic domain YPK_3271 IPR013780 Glycosyl hydrolase, family 13, all-beta YPK_3271 IPR014756 Immunoglobulin E-set YPK_3271 IPR017069 Maltodextrin glucosidase YPK_3271 IPR017853 Glycoside hydrolase, superfamily YPK_3272 IPR002293 Amino acid/polyamine transporter I YPK_3272 IPR004840 Amino acid permease, conserved site YPK_3272 IPR004841 Amino acid permease/ SLC12A domain YPK_3273 IPR004685 Branched-chain amino acid transport system II carrier protein YPK_3274 IPR011862 Phosphate binding protein YPK_3274 IPR024370 PBP domain YPK_3275 IPR000014 PAS domain YPK_3275 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_3275 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_3275 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_3275 IPR013767 PAS fold YPK_3275 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR YPK_3275 IPR021766 Protein of unknown function DUF3329 YPK_3275 IPR035965 YPK_3275 YPK_3275 IPR036097 YPK_3275 YPK_3275 IPR036890 YPK_3275 YPK_3276 IPR001789 Signal transduction response regulator, receiver domain YPK_3276 IPR001867 Signal transduction response regulator, C-terminal YPK_3276 IPR011006 CheY-like superfamily YPK_3276 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB YPK_3276 IPR016032 Signal transduction response regulator, C-terminal effector YPK_3276 IPR036388 YPK_3276 YPK_3277 IPR004593 Nuclease SbcCD subunit D YPK_3277 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPK_3277 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YPK_3277 IPR029052 Metallo-dependent phosphatase-like YPK_3278 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3278 IPR038729 YPK_3278 YPK_3279 IPR000600 ROK YPK_3280 IPR007476 Putative exonuclease, RdgC YPK_3281 IPR009664 Protein of unknown function DUF1255 YPK_3281 IPR011051 RmlC-like cupin domain YPK_3281 IPR014710 RmlC-like jelly roll fold YPK_3282 IPR000623 Shikimate kinase/Threonine synthase-like 1 YPK_3282 IPR023000 Shikimate kinase, conserved site YPK_3282 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3282 IPR027544 Shikimate kinase 2 YPK_3282 IPR031322 YPK_3282 YPK_3283 IPR001737 Ribosomal RNA adenine methylase transferase YPK_3283 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3284 IPR013216 Methyltransferase type 11 YPK_3284 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3286 IPR009875 PilZ domain YPK_3286 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YPK_3286 IPR012349 FMN-binding split barrel YPK_3286 IPR023787 Type III secretion system flagellar brake protein YcgR YPK_3287 IPR000965 Gamma-glutamyl phosphate reductase GPR YPK_3287 IPR012134 Glutamate-5-semialdehyde dehydrogenase YPK_3287 IPR015590 Aldehyde dehydrogenase domain YPK_3287 IPR016161 Aldehyde/histidinol dehydrogenase YPK_3287 IPR016162 Aldehyde dehydrogenase, N-terminal YPK_3287 IPR016163 Aldehyde dehydrogenase, C-terminal YPK_3287 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site YPK_3288 IPR001048 Aspartate/glutamate/uridylate kinase YPK_3288 IPR001057 Glutamate/acetylglutamate kinase YPK_3288 IPR002478 PUA domain YPK_3288 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase YPK_3288 IPR011529 Glutamate 5-kinase YPK_3288 IPR015947 PUA-like domain YPK_3288 IPR019797 Glutamate 5-kinase, conserved site YPK_3288 IPR036393 YPK_3288 YPK_3288 IPR036974 YPK_3288 YPK_3289 IPR009986 Sigma factor-binding protein Crl YPK_3289 IPR038208 YPK_3289 YPK_3290 IPR010520 Protein of unknown function DUF1100, hydrolase-like YPK_3290 IPR029058 Alpha/Beta hydrolase fold YPK_3291 IPR000836 Phosphoribosyltransferase domain YPK_3291 IPR023747 Xanthine-guanine phosphoribosyltransferase YPK_3291 IPR029057 Phosphoribosyltransferase-like YPK_3292 IPR032126 YPK_3292 YPK_3293 IPR004302 Chitin-binding, domain 3 YPK_3293 IPR013783 Immunoglobulin-like fold YPK_3293 IPR014756 Immunoglobulin E-set YPK_3293 IPR022409 PKD/Chitinase domain YPK_3293 IPR035986 YPK_3293 YPK_3295 IPR001160 Peptidase M20C, Xaa-His dipeptidase YPK_3295 IPR002933 Peptidase M20 YPK_3295 IPR011650 Peptidase M20, dimerisation domain YPK_3296 IPR001126 DNA-repair protein, UmuC-like YPK_3296 IPR017961 DNA polymerase, Y-family, little finger domain YPK_3296 IPR022880 DNA polymerase IV YPK_3296 IPR024728 DNA polymerase type-Y, HhH motif YPK_3296 IPR036775 YPK_3296 YPK_3297 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPK_3297 IPR030395 YPK_3297 YPK_3298 IPR007495 Protein of unknown function DUF539 YPK_3299 IPR003374 ApbE-like domain YPK_3299 IPR024932 Flavin transferase ApbE YPK_3300 IPR001041 2Fe-2S ferredoxin-type domain YPK_3300 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPK_3300 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPK_3300 IPR008333 Oxidoreductase, FAD-binding domain YPK_3300 IPR010205 NADH-quinone reductase, Na(+)-translocating, F subunit YPK_3300 IPR012675 Beta-grasp domain YPK_3300 IPR017938 Riboflavin synthase-like beta-barrel YPK_3300 IPR036010 YPK_3300 YPK_3300 IPR039261 YPK_3300 YPK_3301 IPR003667 Electron transport complex, Rnf/Nqr YPK_3301 IPR010967 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YPK_3302 IPR003667 Electron transport complex, Rnf/Nqr YPK_3302 IPR011292 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit YPK_3303 IPR007329 FMN-binding YPK_3303 IPR010204 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit YPK_3304 IPR004338 NADH-quinone reductase NQR2/RnfD YPK_3304 IPR010966 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit YPK_3305 IPR008703 NADH-quinone reductase, Na(+)-translocating, subunit A YPK_3305 IPR022615 NADH-quinone reductase, Na(+)-translocating, subunit A, C-terminal YPK_3306 IPR005490 L,D-transpeptidase catalytic domain YPK_3306 IPR038063 YPK_3306 YPK_3307 IPR026869 Putative glutamine amidotransferase type 2 YPK_3307 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_3308 IPR001347 Sugar isomerase (SIS) YPK_3308 IPR004515 Phosphoheptose isomerase YPK_3309 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPK_3309 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain YPK_3309 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal YPK_3309 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type YPK_3309 IPR036250 YPK_3309 YPK_3309 IPR037069 YPK_3309 YPK_3310 IPR004356 Adhesin operon regulatory protein YPK_3312 IPR006626 Parallel beta-helix repeat YPK_3312 IPR008638 Filamentous haemagglutinin, N-terminal YPK_3312 IPR011050 Pectin lyase fold/virulence factor YPK_3312 IPR012334 Pectin lyase fold YPK_3312 IPR024973 ESPR domain YPK_3313 IPR005565 Haemolysin activator HlyB YPK_3313 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_3316 IPR002686 Transposase IS200-like YPK_3316 IPR036515 YPK_3316 YPK_3317 IPR002575 Aminoglycoside phosphotransferase YPK_3317 IPR009212 Methylthioribose kinase YPK_3317 IPR011009 Protein kinase-like domain YPK_3318 IPR000649 Initiation factor 2B-related YPK_3318 IPR005251 Methylthioribose-1-phosphate isomerase YPK_3318 IPR011559 Initiation factor 2B alpha/beta/delta YPK_3318 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain YPK_3318 IPR037171 YPK_3318 YPK_3319 IPR004313 Acireductone dioxygenase ARD family YPK_3319 IPR011051 RmlC-like cupin domain YPK_3319 IPR014710 RmlC-like jelly roll fold YPK_3319 IPR023956 Acireductone dioxygenase ARD YPK_3320 IPR006439 HAD hydrolase, subfamily IA YPK_3320 IPR023214 HAD-like domain YPK_3320 IPR023943 Enolase-phosphatase E1 YPK_3320 IPR036412 YPK_3320 YPK_3321 IPR001303 Class II aldolase/adducin N-terminal YPK_3321 IPR017714 Methylthioribulose-1-phosphate dehydratase YPK_3321 IPR036409 YPK_3321 YPK_3322 IPR004839 Aminotransferase, class I/classII YPK_3322 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_3322 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_3322 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3323 IPR003010 Carbon-nitrogen hydrolase YPK_3323 IPR036526 YPK_3323 YPK_3324 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPK_3324 IPR002933 Peptidase M20 YPK_3324 IPR010158 Amidase, hydantoinase/carbamoylase YPK_3324 IPR036264 YPK_3324 YPK_3325 IPR000192 Aminotransferase class V domain YPK_3325 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_3325 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_3325 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3325 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase YPK_3326 IPR003439 ABC transporter-like YPK_3326 IPR003593 AAA+ ATPase domain YPK_3326 IPR017871 ABC transporter, conserved site YPK_3326 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3326 IPR030679 YPK_3326 YPK_3327 IPR000515 MetI-like domain YPK_3327 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_3327 IPR035906 YPK_3327 YPK_3328 IPR000515 MetI-like domain YPK_3328 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_3328 IPR035906 YPK_3328 YPK_3329 IPR001638 Extracellular solute-binding protein, family 3 YPK_3329 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPK_3330 IPR000281 Helix-turn-helix protein RpiR YPK_3330 IPR001347 Sugar isomerase (SIS) YPK_3330 IPR009057 Homeodomain-like YPK_3330 IPR036388 YPK_3330 YPK_3331 IPR025148 Protein of unknown function DUF4089 YPK_3332 IPR014087 Amidohydrolase, AtzE type YPK_3332 IPR023631 Amidase signature domain YPK_3332 IPR036928 YPK_3332 YPK_3333 IPR024507 Protein of unknown function DUF3225 YPK_3333 IPR032710 YPK_3333 YPK_3334 IPR011701 Major facilitator superfamily YPK_3334 IPR036259 YPK_3334 YPK_3335 IPR011606 Branched-chain amino acid transport, permease YPK_3336 IPR008407 Branched-chain amino acid transport, AzlD YPK_3337 IPR000835 MarR-type HTH domain YPK_3337 IPR023187 Transcriptional regulator MarR-type, conserved site YPK_3337 IPR036388 YPK_3337 YPK_3337 IPR036390 YPK_3337 YPK_3338 IPR005694 Efflux pump membrane protein Emr YPK_3338 IPR006143 RND efflux pump, membrane fusion protein YPK_3338 IPR032317 YPK_3338 YPK_3339 IPR004638 Drug resistance transporter EmrB/QacA subfamily YPK_3339 IPR011701 Major facilitator superfamily YPK_3339 IPR036259 YPK_3339 YPK_3340 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPK_3340 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPK_3340 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted YPK_3340 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_3340 IPR029028 Alpha/beta knot methyltransferases YPK_3340 IPR029064 50S ribosomal protein L30e-like YPK_3341 IPR005746 Thioredoxin YPK_3341 IPR013766 Thioredoxin domain YPK_3341 IPR017937 Thioredoxin, conserved site YPK_3341 IPR036249 YPK_3341 YPK_3342 IPR005636 DTW YPK_3343 IPR000182 GNAT domain YPK_3343 IPR003781 CoA-binding YPK_3343 IPR013815 ATP-grasp fold, subdomain 1 YPK_3343 IPR016102 Succinyl-CoA synthetase-like YPK_3343 IPR016181 Acyl-CoA N-acyltransferase YPK_3343 IPR032875 YPK_3343 YPK_3343 IPR036291 YPK_3343 YPK_3344 IPR001736 Phospholipase D/Transphosphatidylase YPK_3344 IPR025202 Phospholipase D-like domain YPK_3345 IPR017028 Uncharacterised conserved protein UCP034456 YPK_3345 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YPK_3349 IPR001270 ClpA/B family YPK_3349 IPR003593 AAA+ ATPase domain YPK_3349 IPR003959 ATPase, AAA-type, core YPK_3349 IPR004176 Clp, N-terminal YPK_3349 IPR017730 Chaperonin ClpB YPK_3349 IPR018368 ClpA/B, conserved site 1 YPK_3349 IPR019489 Clp ATPase, C-terminal YPK_3349 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3349 IPR028299 ClpA/B, conserved site 2 YPK_3349 IPR036628 YPK_3349 YPK_3350 IPR003730 Multi-copper polyphenol oxidoreductase, laccase YPK_3350 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPK_3350 IPR038371 YPK_3350 YPK_3351 IPR002942 RNA-binding S4 domain YPK_3351 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPK_3351 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPK_3351 IPR006225 Pseudouridine synthase, RluC/RluD YPK_3351 IPR020103 Pseudouridine synthase, catalytic domain YPK_3351 IPR036986 YPK_3351 YPK_3352 IPR011990 Tetratricopeptide-like helical domain YPK_3352 IPR017689 Outer membrane protein assembly factor BamD YPK_3352 IPR039565 YPK_3352 YPK_3353 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein YPK_3353 IPR036567 YPK_3353 YPK_3355 IPR001086 Prephenate dehydratase YPK_3355 IPR002701 Chorismate mutase YPK_3355 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase YPK_3355 IPR010952 Chorismate mutase, gammaproteobacteria YPK_3355 IPR018528 Prephenate dehydratase, conserved site YPK_3355 IPR036263 YPK_3355 YPK_3355 IPR036979 YPK_3355 YPK_3356 IPR002701 Chorismate mutase YPK_3356 IPR003099 Prephenate dehydrogenase YPK_3356 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein YPK_3356 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_3356 IPR011277 Chorismate mutase, T-protein YPK_3356 IPR036263 YPK_3356 YPK_3356 IPR036291 YPK_3356 YPK_3356 IPR036979 YPK_3356 YPK_3357 IPR006218 DAHP synthetase I/KDSA YPK_3357 IPR006219 DHAP synthase, class 1 YPK_3357 IPR013785 Aldolase-type TIM barrel YPK_3358 IPR001789 Signal transduction response regulator, receiver domain YPK_3358 IPR007492 LytTR DNA-binding domain YPK_3358 IPR011006 CheY-like superfamily YPK_3359 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPK_3360 IPR007433 Protein of unknown function DUF481 YPK_3361 IPR001857 Ribosomal protein L19 YPK_3361 IPR008991 Translation protein SH3-like domain YPK_3361 IPR018257 Ribosomal protein L19, conserved site YPK_3361 IPR038657 YPK_3361 YPK_3362 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria YPK_3362 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain YPK_3362 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal YPK_3362 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_3362 IPR029028 Alpha/beta knot methyltransferases YPK_3363 IPR002676 RimM protein YPK_3363 IPR009000 Translation protein, beta-barrel domain YPK_3363 IPR011033 PRC-barrel-like YPK_3363 IPR011961 16S rRNA processing protein RimM YPK_3363 IPR027275 PRC-barrel domain YPK_3363 IPR036976 YPK_3363 YPK_3364 IPR000307 Ribosomal protein S16 YPK_3364 IPR020592 Ribosomal protein S16, conserved site YPK_3364 IPR023803 Ribosomal protein S16 domain YPK_3365 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPK_3365 IPR003593 AAA+ ATPase domain YPK_3365 IPR004125 Signal recognition particle, SRP54 subunit, M-domain YPK_3365 IPR004780 Signal recognition particle protein Ffh YPK_3365 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle YPK_3365 IPR022941 Signal recognition particle, SRP54 subunit YPK_3365 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3365 IPR036891 YPK_3365 YPK_3366 IPR002541 Cytochrome c assembly protein YPK_3367 IPR002550 Domain of unknown function DUF21 YPK_3367 IPR005170 Transporter-associated domain YPK_3367 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_3367 IPR036318 YPK_3367 YPK_3368 IPR003815 S-ribosylhomocysteinase (LuxS) YPK_3368 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YPK_3368 IPR037005 YPK_3368 YPK_3369 IPR006334 Glutamate--cysteine ligase, monofunctional YPK_3369 IPR007370 Glutamate--cysteine ligase YPK_3369 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPK_3370 IPR020143 Uncharacterised protein family, RP436 YPK_3371 IPR006439 HAD hydrolase, subfamily IA YPK_3371 IPR010976 Beta-phosphoglucomutase hydrolase YPK_3371 IPR023198 Phosphoglycolate phosphatase, domain 2 YPK_3371 IPR023214 HAD-like domain YPK_3371 IPR036412 YPK_3371 YPK_3372 IPR003751 Carbon storage regulator YPK_3372 IPR036107 YPK_3372 YPK_3373 IPR002318 Alanine-tRNA ligase, class IIc YPK_3373 IPR003156 DHHA1 domain YPK_3373 IPR009000 Translation protein, beta-barrel domain YPK_3373 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YPK_3373 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain YPK_3373 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain YPK_3373 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal YPK_3373 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria YPK_3374 IPR003783 Regulatory protein RecX YPK_3374 IPR036388 YPK_3374 YPK_3375 IPR003593 AAA+ ATPase domain YPK_3375 IPR013765 DNA recombination and repair protein RecA YPK_3375 IPR020584 DNA recombination/repair protein RecA, conserved site YPK_3375 IPR023400 DNA recombination and repair protein RecA, C-terminal YPK_3375 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3376 IPR008136 CinA, C-terminal YPK_3376 IPR036653 YPK_3376 YPK_3377 IPR011701 Major facilitator superfamily YPK_3377 IPR036259 YPK_3377 YPK_3378 IPR000835 MarR-type HTH domain YPK_3378 IPR007324 Sugar-binding domain, putative YPK_3378 IPR036390 YPK_3378 YPK_3378 IPR037171 YPK_3378 YPK_3380 IPR009015 L-fucose isomerase, N-terminal/central domain YPK_3380 IPR015888 L-fucose isomerase, C-terminal YPK_3381 IPR000577 YPK_3381 YPK_3381 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_3381 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_3382 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_3382 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPK_3382 IPR029061 Thiamin diphosphate-binding fold YPK_3382 IPR033248 YPK_3382 YPK_3383 IPR005474 Transketolase, N-terminal YPK_3383 IPR029061 Thiamin diphosphate-binding fold YPK_3384 IPR001851 ABC transporter, permease YPK_3385 IPR003439 ABC transporter-like YPK_3385 IPR003593 AAA+ ATPase domain YPK_3385 IPR017871 ABC transporter, conserved site YPK_3385 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3386 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YPK_3386 IPR036215 YPK_3386 YPK_3387 IPR025997 Periplasmic binding protein domain YPK_3387 IPR028082 Periplasmic binding protein-like I YPK_3388 IPR000763 Catalase-peroxidase haem YPK_3388 IPR002016 Haem peroxidase, plant/fungal/bacterial YPK_3388 IPR010255 Haem peroxidase YPK_3388 IPR019793 Peroxidases heam-ligand binding site YPK_3388 IPR019794 Peroxidase, active site YPK_3389 IPR009155 Cytochrome b562 YPK_3389 IPR010980 Cytochrome c/b562 YPK_3390 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase YPK_3390 IPR016174 Di-haem cytochrome, transmembrane YPK_3391 IPR020945 DMSO/Nitrate reductase chaperone YPK_3391 IPR026269 Tat proofreading chaperone DmsD-type YPK_3391 IPR028611 Tat proofreading chaperone DmsD YPK_3391 IPR036411 YPK_3391 YPK_3392 IPR007059 DMSO reductase anchor subunit (DmsC) YPK_3393 IPR014297 Dimethylsulphoxide reductase, chain B YPK_3393 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3393 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3394 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPK_3394 IPR006656 Molybdopterin oxidoreductase YPK_3394 IPR006657 Molydopterin dinucleotide-binding domain YPK_3394 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPK_3394 IPR009010 Aspartate decarboxylase-like domain YPK_3394 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE YPK_3394 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPK_3395 IPR001303 Class II aldolase/adducin N-terminal YPK_3395 IPR004661 L-ribulose-5-phosphate 4-epimerase YPK_3395 IPR036409 YPK_3395 YPK_3397 IPR001034 HTH DeoR N-terminal domain YPK_3397 IPR014036 DeoR C-terminal sensor domain YPK_3397 IPR018356 Transcription regulator, HTH DeoR-type, conserved site YPK_3397 IPR036390 YPK_3397 YPK_3397 IPR037171 YPK_3397 YPK_3398 IPR025997 Periplasmic binding protein domain YPK_3398 IPR028082 Periplasmic binding protein-like I YPK_3399 IPR003439 ABC transporter-like YPK_3399 IPR003593 AAA+ ATPase domain YPK_3399 IPR017871 ABC transporter, conserved site YPK_3399 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3400 IPR001851 ABC transporter, permease YPK_3401 IPR001851 ABC transporter, permease YPK_3402 IPR004560 L-ribulose-5-phosphate 3-epimerase YPK_3402 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_3402 IPR036237 YPK_3402 YPK_3403 IPR000577 YPK_3403 YPK_3403 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_3403 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_3404 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YPK_3404 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YPK_3404 IPR011167 Iron-dependent fumarate hydratase YPK_3404 IPR020557 Fumarate lyase, conserved site YPK_3404 IPR036660 YPK_3404 YPK_3405 IPR021831 Protein of unknown function DUF3423 YPK_3406 IPR000994 Peptidase M24, structural domain YPK_3406 IPR001714 Peptidase M24, methionine aminopeptidase YPK_3406 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YPK_3406 IPR036005 YPK_3406 YPK_3408 IPR012927 ShET2 enterotoxin, N-terminal YPK_3409 IPR000531 TonB-dependent receptor, beta-barrel YPK_3409 IPR012910 TonB-dependent receptor, plug YPK_3409 IPR036942 YPK_3409 YPK_3409 IPR037066 YPK_3409 YPK_3411 IPR004852 Di-haem cytochrome c peroxidase YPK_3411 IPR009056 Cytochrome c-like domain YPK_3411 IPR025992 Haem-binding domain YPK_3411 IPR036909 YPK_3411 YPK_3412 IPR001638 Extracellular solute-binding protein, family 3 YPK_3412 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPK_3414 IPR006793 FaeA-like protein YPK_3414 IPR036388 YPK_3414 YPK_3415 IPR001845 HTH ArsR-type DNA-binding domain YPK_3415 IPR036388 YPK_3415 YPK_3415 IPR036390 YPK_3415 YPK_3416 IPR000802 Arsenical pump membrane protein, ArsB YPK_3417 IPR007324 Sugar-binding domain, putative YPK_3417 IPR037171 YPK_3417 YPK_3418 IPR004007 DhaL domain YPK_3418 IPR012737 Dihydroxyacetone kinase, subunit L YPK_3418 IPR036117 YPK_3418 YPK_3419 IPR004006 Dak kinase YPK_3420 IPR002347 Glucose/ribitol dehydrogenase YPK_3420 IPR020904 Short-chain dehydrogenase/reductase, conserved site YPK_3420 IPR036291 YPK_3420 YPK_3421 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPK_3421 IPR011032 GroES (chaperonin 10)-like YPK_3421 IPR013149 Alcohol dehydrogenase, C-terminal YPK_3421 IPR013154 Alcohol dehydrogenase GroES-like YPK_3421 IPR020843 Polyketide synthase, enoylreductase YPK_3421 IPR036291 YPK_3421 YPK_3422 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YPK_3422 IPR004785 Ribose 5-phosphate isomerase B YPK_3422 IPR036569 YPK_3422 YPK_3424 IPR000432 DNA mismatch repair protein MutS, C-terminal YPK_3424 IPR005748 DNA mismatch repair protein MutS, type 1 YPK_3424 IPR007695 DNA mismatch repair protein MutS-like, N-terminal YPK_3424 IPR007696 DNA mismatch repair protein MutS, core YPK_3424 IPR007860 DNA mismatch repair protein MutS, connector domain YPK_3424 IPR007861 DNA mismatch repair protein MutS, clamp YPK_3424 IPR016151 DNA mismatch repair protein MutS, N-terminal YPK_3424 IPR017261 DNA mismatch repair protein Msh6 YPK_3424 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3424 IPR036187 YPK_3424 YPK_3424 IPR036678 YPK_3424 YPK_3425 IPR000943 RNA polymerase sigma-70 YPK_3425 IPR007624 RNA polymerase sigma-70 region 3 YPK_3425 IPR007627 RNA polymerase sigma-70 region 2 YPK_3425 IPR007630 RNA polymerase sigma-70 region 4 YPK_3425 IPR009042 RNA polymerase sigma-70 region 1.2 YPK_3425 IPR012761 RNA polymerase sigma factor RpoS YPK_3425 IPR013324 RNA polymerase sigma factor, region 3/4 YPK_3425 IPR013325 RNA polymerase sigma factor, region 2 YPK_3425 IPR014284 RNA polymerase sigma-70 like domain YPK_3425 IPR036388 YPK_3425 YPK_3426 IPR011055 Duplicated hybrid motif YPK_3426 IPR016047 Peptidase M23 YPK_3426 IPR018392 LysM domain YPK_3426 IPR036779 YPK_3426 YPK_3427 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase YPK_3427 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3428 IPR002828 Survival protein SurE-like phosphatase/nucleotidase YPK_3428 IPR030048 YPK_3428 YPK_3428 IPR036523 YPK_3428 YPK_3429 IPR001656 Pseudouridine synthase, TruD YPK_3429 IPR020103 Pseudouridine synthase, catalytic domain YPK_3429 IPR020119 Pseudouridine synthase TruD, conserved site YPK_3430 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YPK_3430 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site YPK_3430 IPR036571 YPK_3430 YPK_3431 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPK_3431 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site YPK_3431 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3431 IPR034683 YPK_3431 YPK_3432 IPR007060 Septum formation initiator FtsL/DivIC YPK_3432 IPR023081 Cell division protein FtsB YPK_3433 IPR022721 Protein of unknown function DUF3561 YPK_3434 IPR002891 Adenylylsulphate kinase YPK_3434 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3435 IPR000795 Elongation factor, GTP-binding domain YPK_3435 IPR005225 Small GTP-binding protein domain YPK_3435 IPR009000 Translation protein, beta-barrel domain YPK_3435 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPK_3435 IPR011779 Sulphate adenylyltransferase, large subunit YPK_3435 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3435 IPR031157 YPK_3435 YPK_3436 IPR002500 Phosphoadenosine phosphosulphate reductase YPK_3436 IPR011784 Sulphate adenylyltransferase, small subunit YPK_3436 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3437 IPR000878 Tetrapyrrole methylase YPK_3437 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site YPK_3437 IPR006366 Uroporphyrin-III C-methyltransferase YPK_3437 IPR006367 Sirohaem synthase, N-terminal YPK_3437 IPR012409 Sirohaem synthase YPK_3437 IPR014776 Tetrapyrrole methylase, subdomain 2 YPK_3437 IPR014777 Tetrapyrrole methylase, subdomain 1 YPK_3437 IPR019478 Sirohaem synthase, dimerisation domain YPK_3437 IPR028281 Siroheme synthase, central domain YPK_3437 IPR035996 YPK_3437 YPK_3437 IPR036291 YPK_3437 YPK_3437 IPR037115 YPK_3437 YPK_3438 IPR012933 HicA mRNA interferase family YPK_3438 IPR038570 YPK_3438 YPK_3439 IPR013321 Arc-type ribbon-helix-helix YPK_3439 IPR031807 YPK_3439 YPK_3439 IPR035069 YPK_3439 YPK_3440 IPR002500 Phosphoadenosine phosphosulphate reductase YPK_3440 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase YPK_3440 IPR011800 Phosphoadenosine phosphosulphate reductase CysH YPK_3440 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3441 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain YPK_3441 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site YPK_3441 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain YPK_3441 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit YPK_3441 IPR036136 YPK_3441 YPK_3442 IPR001094 Flavodoxin YPK_3442 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPK_3442 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase YPK_3442 IPR003097 FAD-binding, type 1 YPK_3442 IPR008254 Flavodoxin/nitric oxide synthase YPK_3442 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain YPK_3442 IPR017938 Riboflavin synthase-like beta-barrel YPK_3442 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 YPK_3442 IPR029039 Flavoprotein-like YPK_3442 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria YPK_3442 IPR039261 YPK_3442 YPK_3443 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein YPK_3443 IPR038418 YPK_3443 YPK_3444 IPR007197 Radical SAM YPK_3444 IPR013785 Aldolase-type TIM barrel YPK_3444 IPR024924 7-carboxy-7-deazaguanine synthase-like YPK_3444 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria YPK_3445 IPR001424 Superoxide dismutase, copper/zinc binding domain YPK_3445 IPR018152 Superoxide dismutase, copper/zinc, binding site YPK_3445 IPR036423 YPK_3445 YPK_3446 IPR000941 Enolase YPK_3446 IPR020809 Enolase, conserved site YPK_3446 IPR020810 Enolase, C-terminal YPK_3446 IPR020811 Enolase, N-terminal YPK_3446 IPR029017 Enolase N-terminal domain-like YPK_3446 IPR036849 YPK_3446 YPK_3447 IPR004468 CTP synthase YPK_3447 IPR017456 CTP synthase, N-terminal YPK_3447 IPR017926 Glutamine amidotransferase YPK_3447 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3447 IPR029062 Class I glutamine amidotransferase-like YPK_3448 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YPK_3448 IPR011551 NTP pyrophosphohydrolase MazG, bacterial YPK_3449 IPR002912 ACT domain YPK_3449 IPR003607 HD/PDEase domain YPK_3449 IPR004095 TGS YPK_3449 IPR004811 RelA/SpoT family YPK_3449 IPR007685 RelA/SpoT YPK_3449 IPR012675 Beta-grasp domain YPK_3449 IPR012676 TGS-like YPK_3450 IPR030391 YPK_3450 YPK_3451 IPR001789 Signal transduction response regulator, receiver domain YPK_3451 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_3451 IPR003660 HAMP linker domain YPK_3451 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_3451 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_3451 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPK_3451 IPR011006 CheY-like superfamily YPK_3451 IPR019247 Histidine kinase BarA, N-terminal YPK_3451 IPR036097 YPK_3451 YPK_3451 IPR036641 YPK_3451 YPK_3451 IPR036890 YPK_3451 YPK_3452 IPR001478 PDZ domain YPK_3452 IPR001940 Peptidase S1C YPK_3452 IPR009003 Trypsin-like cysteine/serine peptidase domain YPK_3452 IPR011782 Peptidase S1C, Do YPK_3452 IPR036034 YPK_3452 YPK_3453 IPR003607 HD/PDEase domain YPK_3453 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase YPK_3453 IPR006674 HD domain YPK_3453 IPR020779 Deoxyguanosinetriphosphate triphosphohydrolase, proteobacteria YPK_3453 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain YPK_3453 IPR026875 Phosphohydrolase-associated domain YPK_3454 IPR000845 Nucleoside phosphorylase domain YPK_3454 IPR010049 MTA/SAH nucleosidase YPK_3454 IPR035994 YPK_3454 YPK_3455 IPR002491 ABC transporter periplasmic binding domain YPK_3455 IPR023544 ABC transporter, vitamin B12-binding protein YPK_3456 IPR005115 Uncharacterised domain UPF0126 YPK_3457 IPR000361 FeS cluster biogenesis YPK_3457 IPR016092 FeS cluster insertion protein YPK_3457 IPR017870 FeS cluster insertion, C-terminal, conserved site YPK_3457 IPR023063 Iron-sulfur cluster insertion protein ErpA YPK_3457 IPR035903 YPK_3457 YPK_3458 IPR001807 Chloride channel, voltage gated YPK_3458 IPR014743 Chloride channel, core YPK_3458 IPR023861 Chloride channel, ClcA YPK_3459 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase YPK_3459 IPR005814 Aminotransferase class-III YPK_3459 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_3459 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_3459 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3460 IPR000522 ABC transporter, permease protein YPK_3460 IPR037294 YPK_3460 YPK_3461 IPR002491 ABC transporter periplasmic binding domain YPK_3462 IPR003439 ABC transporter-like YPK_3462 IPR003593 AAA+ ATPase domain YPK_3462 IPR017871 ABC transporter, conserved site YPK_3462 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3463 IPR001264 Glycosyl transferase, family 51 YPK_3463 IPR001460 Penicillin-binding protein, transpeptidase YPK_3463 IPR011813 Penicillin-binding protein 1B YPK_3463 IPR012338 Beta-lactamase/transpeptidase-like YPK_3463 IPR023346 Lysozyme-like domain YPK_3463 IPR028166 Bifunctional transglycosylase second domain YPK_3463 IPR032730 YPK_3463 YPK_3463 IPR036950 YPK_3463 YPK_3464 IPR001650 Helicase, C-terminal YPK_3464 IPR007502 Helicase-associated domain YPK_3464 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type YPK_3464 IPR011545 DEAD/DEAH box helicase domain YPK_3464 IPR013689 RNA helicase, ATP-dependent, HrpB type, C-terminal YPK_3464 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_3464 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3466 IPR004175 2',5' RNA ligase YPK_3466 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase YPK_3466 IPR014051 Phosphoesterase, HXTX YPK_3467 IPR005224 Sugar fermentation stimulation protein YPK_3468 IPR000962 Zinc finger, DksA/TraR C4-type YPK_3468 IPR012784 RNA polymerase-binding transcription factor DksA YPK_3468 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YPK_3468 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YPK_3468 IPR037187 YPK_3468 YPK_3469 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YPK_3469 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3469 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YPK_3469 IPR022380 Glutamyl-Q tRNA(Asp) synthetase YPK_3470 IPR002646 Poly A polymerase, head domain YPK_3470 IPR010206 Poly(A) polymerase I YPK_3470 IPR025866 Polymerase A arginine-rich C-terminal domain YPK_3470 IPR032828 YPK_3470 YPK_3471 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YPK_3471 IPR035907 YPK_3471 YPK_3472 IPR003700 Ketopantoate hydroxymethyltransferase YPK_3472 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_3473 IPR003721 Pantoate-beta-alanine ligase YPK_3473 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3474 IPR003190 Aspartate decarboxylase YPK_3474 IPR009010 Aspartate decarboxylase-like domain YPK_3475 IPR002509 Polysaccharide deacetylase YPK_3475 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPK_3476 IPR000412 ABC-2 transporter YPK_3476 IPR013525 ABC-2 type transporter YPK_3477 IPR003439 ABC transporter-like YPK_3477 IPR003593 AAA+ ATPase domain YPK_3477 IPR017871 ABC transporter, conserved site YPK_3477 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3478 IPR001765 Carbonic anhydrase YPK_3478 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site YPK_3478 IPR036874 YPK_3478 YPK_3479 IPR000836 Phosphoribosyltransferase domain YPK_3479 IPR005904 Hypoxanthine phosphoribosyl transferase YPK_3479 IPR029057 Phosphoribosyltransferase-like YPK_3480 IPR001117 Multicopper oxidase, type 1 YPK_3480 IPR002355 Multicopper oxidase, copper-binding site YPK_3480 IPR008972 Cupredoxin YPK_3480 IPR011706 Multicopper oxidase, type 2 YPK_3480 IPR011707 Multicopper oxidase, type 3 YPK_3480 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_3481 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPK_3481 IPR038432 YPK_3481 YPK_3482 IPR001045 Spermidine/spermine synthases family YPK_3482 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3482 IPR030373 YPK_3482 YPK_3482 IPR035246 YPK_3482 YPK_3482 IPR037163 YPK_3482 YPK_3483 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic YPK_3483 IPR009165 S-adenosylmethionine decarboxylase, bacterial YPK_3483 IPR016067 S-adenosylmethionine decarboxylase, core YPK_3485 IPR000620 Drug/metabolite transporter YPK_3486 IPR008249 Uncharacterised protein family UPF0231 YPK_3487 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YPK_3487 IPR004406 Aconitase B, bacterial YPK_3487 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPK_3487 IPR015929 Aconitase B, N-terminal, bacterial YPK_3487 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPK_3487 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 YPK_3487 IPR015933 Aconitase B, HEAT-like, bacterial YPK_3487 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPK_3487 IPR036008 YPK_3487 YPK_3487 IPR036288 YPK_3487 YPK_3488 IPR002686 Transposase IS200-like YPK_3488 IPR036515 YPK_3488 YPK_3489 IPR001100 YPK_3489 YPK_3489 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_3489 IPR006258 Dihydrolipoamide dehydrogenase YPK_3489 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YPK_3489 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPK_3489 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_3489 IPR036188 YPK_3489 YPK_3490 IPR000089 Biotin/lipoyl attachment YPK_3490 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YPK_3490 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YPK_3490 IPR004167 E3 binding YPK_3490 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex YPK_3490 IPR011053 Single hybrid motif YPK_3490 IPR023213 Chloramphenicol acetyltransferase-like domain YPK_3490 IPR036625 YPK_3490 YPK_3491 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type YPK_3491 IPR005474 Transketolase, N-terminal YPK_3491 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YPK_3491 IPR029061 Thiamin diphosphate-binding fold YPK_3492 IPR000524 Transcription regulator HTH, GntR YPK_3492 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_3492 IPR011711 GntR, C-terminal YPK_3492 IPR036388 YPK_3492 YPK_3492 IPR036390 YPK_3492 YPK_3494 IPR002293 Amino acid/polyamine transporter I YPK_3494 IPR004840 Amino acid permease, conserved site YPK_3494 IPR004841 Amino acid permease/ SLC12A domain YPK_3495 IPR031347 YPK_3495 YPK_3496 IPR002502 N-acetylmuramoyl-L-alanine amidase domain YPK_3496 IPR036505 YPK_3496 YPK_3497 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal YPK_3497 IPR004393 Nicotinate-nucleotide pyrophosphorylase YPK_3497 IPR013785 Aldolase-type TIM barrel YPK_3497 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal YPK_3497 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD YPK_3497 IPR036068 YPK_3497 YPK_3497 IPR037128 YPK_3497 YPK_3498 IPR012902 Prokaryotic N-terminal methylation site YPK_3499 IPR001482 Type II secretion system protein E YPK_3499 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3500 IPR001992 Type II secretion system conserved site YPK_3500 IPR003004 GspF/PilC family YPK_3500 IPR018076 Type II secretion system F domain YPK_3501 IPR001093 IMP dehydrogenase/GMP reductase YPK_3501 IPR005993 Guanosine monophosphate reductase 1 YPK_3501 IPR013785 Aldolase-type TIM barrel YPK_3501 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YPK_3503 IPR001977 Dephospho-CoA kinase YPK_3503 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3504 IPR009777 Cell division protein ZapD YPK_3504 IPR027462 Z ring-associated protein D, C-terminal domain YPK_3504 IPR036268 YPK_3504 YPK_3505 IPR005584 DNA gyrase inhibitor YacG YPK_3505 IPR013088 Zinc finger, NHR/GATA-type YPK_3506 IPR002686 Transposase IS200-like YPK_3506 IPR036515 YPK_3506 YPK_3508 IPR000086 NUDIX hydrolase domain YPK_3508 IPR003561 Mutator MutT YPK_3508 IPR015797 NUDIX hydrolase domain-like YPK_3508 IPR020084 NUDIX hydrolase, conserved site YPK_3508 IPR020476 NUDIX hydrolase YPK_3509 IPR000185 Protein translocase subunit SecA YPK_3509 IPR004027 SEC-C motif YPK_3509 IPR011115 SecA DEAD-like, N-terminal YPK_3509 IPR011116 SecA Wing/Scaffold YPK_3509 IPR011130 SecA preprotein, cross-linking domain YPK_3509 IPR020937 SecA conserved site YPK_3509 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3509 IPR036266 YPK_3509 YPK_3509 IPR036670 YPK_3509 YPK_3510 IPR009502 Secretion monitor YPK_3511 IPR007922 Protein of unknown function DUF721/UPF0232 YPK_3512 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase YPK_3512 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal YPK_3512 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal YPK_3512 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3513 IPR000158 Cell division protein FtsZ YPK_3513 IPR003008 Tubulin/FtsZ, GTPase domain YPK_3513 IPR008280 Tubulin/FtsZ, C-terminal YPK_3513 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YPK_3513 IPR020805 Cell division protein FtsZ, conserved site YPK_3513 IPR024757 Cell division protein FtsZ, C-terminal YPK_3513 IPR036525 YPK_3513 YPK_3514 IPR003494 SHS2 domain inserted in FtsA YPK_3514 IPR020823 Cell division protein FtsA YPK_3515 IPR005548 Cell division protein FtsQ/DivIB YPK_3515 IPR013685 Polypeptide-transport-associated, FtsQ-type YPK_3515 IPR026579 Cell division protein FtsQ YPK_3516 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site YPK_3516 IPR005905 D-alanine--D-alanine ligase YPK_3516 IPR011095 D-alanine--D-alanine ligase, C-terminal YPK_3516 IPR011127 D-alanine--D-alanine ligase, N-terminal domain YPK_3516 IPR013815 ATP-grasp fold, subdomain 1 YPK_3516 IPR016185 Pre-ATP-grasp domain YPK_3517 IPR000713 Mur ligase, N-terminal YPK_3517 IPR004101 Mur ligase, C-terminal YPK_3517 IPR005758 UDP-N-acetylmuramate-alanine ligase YPK_3517 IPR013221 Mur ligase, central YPK_3517 IPR036565 YPK_3517 YPK_3517 IPR036615 YPK_3517 YPK_3518 IPR004276 Glycosyl transferase, family 28 YPK_3518 IPR006009 N-acetylglucosaminyltransferase, MurG YPK_3518 IPR007235 Glycosyl transferase, family 28, C-terminal YPK_3519 IPR001182 Cell cycle protein FtsW/RodA YPK_3519 IPR013437 Cell division protein FtsW YPK_3519 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site YPK_3520 IPR004101 Mur ligase, C-terminal YPK_3520 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase YPK_3520 IPR013221 Mur ligase, central YPK_3520 IPR036565 YPK_3520 YPK_3520 IPR036615 YPK_3520 YPK_3521 IPR000715 Glycosyl transferase, family 4 YPK_3521 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase YPK_3521 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YPK_3522 IPR000713 Mur ligase, N-terminal YPK_3522 IPR004101 Mur ligase, C-terminal YPK_3522 IPR005863 UDP-MurNAc-pentapeptide synthetase YPK_3522 IPR013221 Mur ligase, central YPK_3522 IPR035911 YPK_3522 YPK_3522 IPR036565 YPK_3522 YPK_3522 IPR036615 YPK_3522 YPK_3523 IPR000713 Mur ligase, N-terminal YPK_3523 IPR004101 Mur ligase, C-terminal YPK_3523 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase YPK_3523 IPR013221 Mur ligase, central YPK_3523 IPR035911 YPK_3523 YPK_3523 IPR036565 YPK_3523 YPK_3523 IPR036615 YPK_3523 YPK_3524 IPR001460 Penicillin-binding protein, transpeptidase YPK_3524 IPR005311 Penicillin-binding protein, dimerisation domain YPK_3524 IPR012338 Beta-lactamase/transpeptidase-like YPK_3524 IPR036138 YPK_3524 YPK_3524 IPR037532 YPK_3524 YPK_3525 IPR011922 Cell division protein FtsL YPK_3526 IPR002903 Ribosomal RNA small subunit methyltransferase H YPK_3526 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain YPK_3526 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3527 IPR003444 MraZ YPK_3527 IPR020603 MraZ domain YPK_3527 IPR037914 YPK_3527 YPK_3527 IPR038619 YPK_3527 YPK_3528 IPR010574 L-alanine exporter AlaE YPK_3529 IPR000843 Transcription regulator HTH, LacI YPK_3529 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_3529 IPR010982 Lambda repressor-like, DNA-binding domain YPK_3529 IPR012781 D-fructose-responsive transcription factor YPK_3529 IPR028082 Periplasmic binding protein-like I YPK_3530 IPR002912 ACT domain YPK_3530 IPR004789 Acetolactate synthase, small subunit YPK_3530 IPR019455 Acetolactate synthase, small subunit, C-terminal YPK_3530 IPR027271 YPK_3530 YPK_3531 IPR000399 TPP-binding enzyme, conserved site YPK_3531 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPK_3531 IPR012000 Thiamine pyrophosphate enzyme, central domain YPK_3531 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPK_3531 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPK_3531 IPR029035 DHS-like NAD/FAD-binding domain YPK_3531 IPR029061 Thiamin diphosphate-binding fold YPK_3532 IPR000873 AMP-dependent synthetase/ligase YPK_3532 IPR020845 AMP-binding, conserved site YPK_3533 IPR000847 Transcription regulator HTH, LysR YPK_3533 IPR005119 LysR, substrate-binding YPK_3533 IPR036388 YPK_3533 YPK_3533 IPR036390 YPK_3533 YPK_3535 IPR000891 Pyruvate carboxyltransferase YPK_3535 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site YPK_3535 IPR005671 2-isopropylmalate synthase, bacterial-type YPK_3535 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YPK_3535 IPR013785 Aldolase-type TIM barrel YPK_3535 IPR036230 YPK_3535 YPK_3536 IPR004429 Isopropylmalate dehydrogenase YPK_3536 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YPK_3536 IPR024084 Isopropylmalate dehydrogenase-like domain YPK_3537 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YPK_3537 IPR004430 3-isopropylmalate dehydratase, large subunit YPK_3537 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YPK_3537 IPR018136 Aconitase family, 4Fe-4S cluster binding site YPK_3537 IPR036008 YPK_3537 YPK_3538 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel YPK_3538 IPR004431 3-isopropylmalate dehydratase, small subunit YPK_3538 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YPK_3539 IPR004750 Sugar efflux YPK_3539 IPR011701 Major facilitator superfamily YPK_3539 IPR036259 YPK_3539 YPK_3540 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_3540 IPR023767 Transcriptional regulator SgrR YPK_3540 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPK_3540 IPR036390 YPK_3540 YPK_3542 IPR005948 Thiamine ABC transporter periplasmic binding protein YPK_3542 IPR005967 Proteobacterial thiamine ABC transporter, periplasmic binding protein YPK_3543 IPR000515 MetI-like domain YPK_3543 IPR005947 Thiamine ABC transporter, permease protein YPK_3543 IPR035906 YPK_3543 YPK_3544 IPR003439 ABC transporter-like YPK_3544 IPR003593 AAA+ ATPase domain YPK_3544 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ YPK_3544 IPR017871 ABC transporter, conserved site YPK_3544 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3545 IPR032816 YPK_3545 YPK_3546 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain YPK_3546 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain YPK_3546 IPR006172 DNA-directed DNA polymerase, family B YPK_3546 IPR012337 Ribonuclease H-like domain YPK_3546 IPR017964 DNA-directed DNA polymerase, family B, conserved site YPK_3546 IPR023211 DNA polymerase, palm domain YPK_3546 IPR036397 YPK_3546 YPK_3547 IPR000330 SNF2-related YPK_3547 IPR001650 Helicase, C-terminal YPK_3547 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_3547 IPR022737 RNA polymerase recycling, bacterial, C-terminal YPK_3547 IPR023949 RNA polymerase-associated protein RapA YPK_3547 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3547 IPR038718 YPK_3547 YPK_3550 IPR009612 ImcF-related YPK_3550 IPR010623 Domain of unknown function DUF1215 YPK_3550 IPR017731 Type VI secretion system, IcmF YPK_3550 IPR025743 ImcF-related, N-terminal domain YPK_3550 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3551 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_3551 IPR017732 Type IV / VI secretion system, DotU YPK_3551 IPR036737 YPK_3551 YPK_3551 IPR038522 YPK_3551 YPK_3552 IPR010263 Protein of unknown function DUF876 YPK_3553 IPR017734 Type VI secretion system, lipoprotein SciN YPK_3553 IPR038706 YPK_3553 YPK_3554 IPR025425 Domain of unknown function DUF4150 YPK_3555 IPR021927 Protein of unknown function DUF3540 YPK_3556 IPR001646 Pentapeptide repeat YPK_3557 IPR001646 Pentapeptide repeat YPK_3557 IPR018683 Domain of unknown function DUF2169 YPK_3558 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_3558 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_3558 IPR037026 YPK_3558 YPK_3559 IPR001270 ClpA/B family YPK_3559 IPR003593 AAA+ ATPase domain YPK_3559 IPR003959 ATPase, AAA-type, core YPK_3559 IPR004176 Clp, N-terminal YPK_3559 IPR017729 Type VI secretion system, ATPase ClpV1 YPK_3559 IPR019489 Clp ATPase, C-terminal YPK_3559 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3559 IPR036628 YPK_3559 YPK_3560 IPR010732 Protein of unknown function DUF1305 YPK_3561 IPR010272 Type VI secretion system, VCA0110 YPK_3562 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_3563 IPR008514 Type VI secretion system effector, Hcp YPK_3563 IPR036624 YPK_3563 YPK_3564 IPR010269 Protein of unknown function DUF877 YPK_3565 IPR008312 Uncharacterised conserved protein UCP028301 YPK_3566 IPR010657 ImpA, N-terminal YPK_3567 IPR018754 Protein of unknown function DUF2285 YPK_3568 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YPK_3568 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YPK_3568 IPR020103 Pseudouridine synthase, catalytic domain YPK_3569 IPR001623 DnaJ domain YPK_3569 IPR007791 Heat shock protein DnaJ-like protein DjlA YPK_3569 IPR023749 DnaJ-like protein DjlA YPK_3569 IPR029024 TerB-like YPK_3569 IPR036869 YPK_3569 YPK_3570 IPR005653 Organic solvent tolerance-like, N-terminal YPK_3570 IPR007543 Organic solvent tolerance protein, C-terminal YPK_3570 IPR020889 Lipopolysaccharide assembly, LptD YPK_3571 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YPK_3571 IPR015391 SurA N-terminal YPK_3571 IPR023034 Peptidyl-prolyl isomerase SurA YPK_3571 IPR027304 Trigger factor/SurA domain YPK_3572 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA YPK_3572 IPR037510 YPK_3572 YPK_3573 IPR001737 Ribosomal RNA adenine methylase transferase YPK_3573 IPR011530 Ribosomal RNA adenine dimethylase YPK_3573 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site YPK_3573 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal YPK_3573 IPR023165 rRNA adenine dimethylase-like YPK_3573 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3574 IPR007474 ApaG domain YPK_3574 IPR023065 Uncharacterised protein family ApaG YPK_3574 IPR036767 YPK_3574 YPK_3575 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YPK_3575 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPK_3575 IPR029052 Metallo-dependent phosphatase-like YPK_3576 IPR022231 Protein of unknown function DUF3757 YPK_3577 IPR022231 Protein of unknown function DUF3757 YPK_3578 IPR001796 Dihydrofolate reductase domain YPK_3578 IPR012259 Dihydrofolate reductase YPK_3578 IPR017925 Dihydrofolate reductase conserved site YPK_3578 IPR024072 Dihydrofolate reductase-like domain YPK_3579 IPR020914 Uncharacterised protein family UPF0442 YPK_3579 IPR024528 Domain of unknown function DUF3815 YPK_3580 IPR010619 Domain of unknown function DUF1212 YPK_3581 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPK_3582 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YPK_3582 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain YPK_3582 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain YPK_3582 IPR006275 Carbamoyl-phosphate synthase, large subunit YPK_3582 IPR011607 Methylglyoxal synthase-like domain YPK_3582 IPR016185 Pre-ATP-grasp domain YPK_3582 IPR036897 YPK_3582 YPK_3582 IPR036914 YPK_3582 YPK_3583 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain YPK_3583 IPR006274 Carbamoyl-phosphate synthase, small subunit YPK_3583 IPR017926 Glutamine amidotransferase YPK_3583 IPR029062 Class I glutamine amidotransferase-like YPK_3583 IPR036480 YPK_3583 YPK_3584 IPR000846 Dihydrodipicolinate reductase, N-terminal YPK_3584 IPR022663 Dihydrodipicolinate reductase, C-terminal YPK_3584 IPR022664 Dihydrodipicolinate reductase, conserved site YPK_3584 IPR023940 Dihydrodipicolinate reductase, bacterial YPK_3584 IPR036291 YPK_3584 YPK_3585 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YPK_3586 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPK_3587 IPR001872 Peptidase A8, signal peptidase II YPK_3588 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_3588 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPK_3588 IPR002301 Isoleucine-tRNA ligase YPK_3588 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPK_3588 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPK_3588 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase YPK_3588 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPK_3588 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3588 IPR023585 Isoleucine-tRNA ligase, type 1 YPK_3589 IPR002606 Riboflavin kinase, bacterial YPK_3589 IPR004821 Cytidyltransferase-like domain YPK_3589 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3589 IPR015864 FAD synthetase YPK_3589 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YPK_3589 IPR023465 Riboflavin kinase domain YPK_3590 IPR002583 Ribosomal protein S20 YPK_3590 IPR036510 YPK_3590 YPK_3591 IPR000847 Transcription regulator HTH, LysR YPK_3591 IPR005119 LysR, substrate-binding YPK_3591 IPR036388 YPK_3591 YPK_3591 IPR036390 YPK_3591 YPK_3592 IPR004670 Na+/H+ antiporter NhaA YPK_3592 IPR023171 Na/H antiporter domain YPK_3593 IPR001305 Heat shock protein DnaJ, cysteine-rich domain YPK_3593 IPR001623 DnaJ domain YPK_3593 IPR002939 Chaperone DnaJ, C-terminal YPK_3593 IPR008971 HSP40/DnaJ peptide-binding YPK_3593 IPR012724 Chaperone DnaJ YPK_3593 IPR018253 DnaJ domain, conserved site YPK_3593 IPR036410 YPK_3593 YPK_3593 IPR036869 YPK_3593 YPK_3594 IPR012725 Chaperone DnaK YPK_3594 IPR013126 Heat shock protein 70 family YPK_3594 IPR018181 Heat shock protein 70, conserved site YPK_3594 IPR029047 Heat shock protein 70kD, peptide-binding domain YPK_3594 IPR029048 Heat shock protein 70kD, C-terminal domain YPK_3595 IPR000791 GPR1/FUN34/yaaH YPK_3596 IPR011024 Gamma-crystallin-related YPK_3596 IPR016181 Acyl-CoA N-acyltransferase YPK_3597 IPR011701 Major facilitator superfamily YPK_3597 IPR036259 YPK_3597 YPK_3598 IPR001453 Molybdopterin binding domain YPK_3598 IPR008284 Molybdenum cofactor biosynthesis, conserved site YPK_3598 IPR036425 YPK_3598 YPK_3599 IPR001585 Transaldolase YPK_3599 IPR004730 Transaldolase type 1 YPK_3599 IPR013785 Aldolase-type TIM barrel YPK_3599 IPR018225 Transaldolase, active site YPK_3600 IPR005583 Uncharacterised protein family UPF0246 YPK_3602 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPK_3602 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_3602 IPR004450 Threonine synthase-like YPK_3602 IPR029144 Threonine synthase, N-terminal YPK_3602 IPR036052 YPK_3602 YPK_3602 IPR037158 YPK_3602 YPK_3603 IPR000870 Homoserine kinase YPK_3603 IPR006203 GHMP kinase, ATP-binding, conserved site YPK_3603 IPR006204 GHMP kinase N-terminal domain YPK_3603 IPR013750 GHMP kinase, C-terminal domain YPK_3603 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3603 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3603 IPR036554 YPK_3603 YPK_3604 IPR001048 Aspartate/glutamate/uridylate kinase YPK_3604 IPR001341 Aspartate kinase domain YPK_3604 IPR001342 Homoserine dehydrogenase, catalytic YPK_3604 IPR002912 ACT domain YPK_3604 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPK_3604 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPK_3604 IPR018042 Aspartate kinase, conserved site YPK_3604 IPR019811 Homoserine dehydrogenase, conserved site YPK_3604 IPR027795 GATS-like ACT domain YPK_3604 IPR036291 YPK_3604 YPK_3604 IPR036393 YPK_3604 YPK_3606 IPR001789 Signal transduction response regulator, receiver domain YPK_3606 IPR001867 Signal transduction response regulator, C-terminal YPK_3606 IPR011006 CheY-like superfamily YPK_3606 IPR016032 Signal transduction response regulator, C-terminal effector YPK_3606 IPR036388 YPK_3606 YPK_3607 IPR010292 Uncharacterised protein family CreA YPK_3609 IPR009057 Homeodomain-like YPK_3609 IPR010499 Bacterial transcription activator, effector binding YPK_3609 IPR011256 Regulatory factor, effector binding domain YPK_3609 IPR018060 DNA binding HTH domain, AraC-type YPK_3609 IPR018062 HTH domain AraC-type, conserved site YPK_3609 IPR020449 Transcription regulator HTH, AraC- type YPK_3609 IPR029442 GyrI-like small molecule binding domain YPK_3610 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site YPK_3610 IPR013078 Histidine phosphatase superfamily, clade-1 YPK_3610 IPR023086 Phosphoglycerate mutase, GpmB, probable YPK_3610 IPR029033 Histidine phosphatase superfamily YPK_3611 IPR002786 Non-canonical purine NTP phosphatase YPK_3611 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YPK_3611 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_3612 IPR000831 Trp repressor YPK_3612 IPR010921 Trp repressor/replication initiator YPK_3612 IPR013335 Trp repressor, bacterial YPK_3612 IPR038116 YPK_3612 YPK_3613 IPR000189 Prokaryotic transglycosylase, active site YPK_3613 IPR008258 Lytic transglycosylase-like SLT domain YPK_3613 IPR008939 Lytic transglycosylase, superhelical U-shaped YPK_3613 IPR012289 Lytic transglycosylase, superhelical linker YPK_3613 IPR023346 Lysozyme-like domain YPK_3613 IPR037061 YPK_3613 YPK_3614 IPR001757 Cation-transporting P-type ATPase YPK_3614 IPR004014 Cation-transporting P-type ATPase, N-terminal YPK_3614 IPR006068 Cation-transporting P-type ATPase, C-terminal YPK_3614 IPR008250 P-type ATPase, A domain YPK_3614 IPR018303 P-type ATPase, phosphorylation site YPK_3614 IPR023214 HAD-like domain YPK_3614 IPR023298 P-type ATPase, transmembrane domain YPK_3614 IPR023299 P-type ATPase, cytoplasmic domain N YPK_3614 IPR036412 YPK_3614 YPK_3615 IPR025293 Protein of unknown function DUF4154 YPK_3616 IPR000160 GGDEF domain YPK_3616 IPR029787 Nucleotide cyclase YPK_3616 IPR033417 YPK_3616 YPK_3617 IPR006664 Outer membrane protein, bacterial YPK_3617 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YPK_3617 IPR036737 YPK_3617 YPK_3618 IPR003439 ABC transporter-like YPK_3618 IPR003593 AAA+ ATPase domain YPK_3618 IPR017871 ABC transporter, conserved site YPK_3618 IPR022374 ABC transporter, ATP-binding protein, ChvD YPK_3618 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3618 IPR032781 YPK_3618 YPK_3619 IPR003812 Fido domain YPK_3619 IPR025230 Domain of unknown function DUF4172 YPK_3619 IPR036388 YPK_3619 YPK_3619 IPR036597 YPK_3619 YPK_3620 IPR001387 Cro/C1-type helix-turn-helix domain YPK_3620 IPR004821 Cytidyltransferase-like domain YPK_3620 IPR006417 Nicotinamide-nucleotide adenylyltransferase YPK_3620 IPR010982 Lambda repressor-like, DNA-binding domain YPK_3620 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3620 IPR016429 Bifunctional transcriptional regulator NadR YPK_3620 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3620 IPR038727 YPK_3620 YPK_3621 IPR003593 AAA+ ATPase domain YPK_3621 IPR004504 DNA repair protein RadA YPK_3621 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3621 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3621 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3622 IPR023190 Phosphoserine phosphatase, domain 2 YPK_3622 IPR023214 HAD-like domain YPK_3622 IPR036412 YPK_3622 YPK_3623 IPR019305 Uncharacterised protein family Smp YPK_3624 IPR000845 Nucleoside phosphorylase domain YPK_3624 IPR004402 Purine nucleoside phosphorylase DeoD-type YPK_3624 IPR018016 Nucleoside phosphorylase, conserved site YPK_3624 IPR035994 YPK_3624 YPK_3625 IPR006124 Metalloenzyme YPK_3625 IPR010045 Phosphopentomutase YPK_3625 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_3625 IPR017850 Alkaline-phosphatase-like, core domain YPK_3625 IPR024052 Phosphopentomutase DeoB cap domain YPK_3626 IPR000053 Pyrimidine-nucleoside phosphorylase YPK_3626 IPR000312 Glycosyl transferase, family 3 YPK_3626 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal YPK_3626 IPR013465 Thymidine phosphorylase YPK_3626 IPR017459 Glycosyl transferase family 3, N-terminal domain YPK_3626 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site YPK_3626 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic YPK_3626 IPR035902 YPK_3626 YPK_3626 IPR036320 YPK_3626 YPK_3626 IPR036566 YPK_3626 YPK_3627 IPR002915 DeoC/FbaB/ lacD aldolase YPK_3627 IPR011343 Deoxyribose-phosphate aldolase YPK_3627 IPR013785 Aldolase-type TIM barrel YPK_3627 IPR023649 Deoxyribose-phosphate aldolase type II YPK_3628 IPR002668 Concentrative nucleoside transporter N-terminal domain YPK_3628 IPR011642 Nucleoside recognition Gate YPK_3628 IPR011657 Concentrative nucleoside transporter C-terminal domain YPK_3628 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial YPK_3629 IPR001130 TatD family YPK_3629 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPK_3629 IPR032466 YPK_3629 YPK_3630 IPR002641 Patatin/Phospholipase A2-related YPK_3630 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPK_3631 IPR009760 Protein of unknown function DUF1328 YPK_3632 IPR007055 BON domain YPK_3632 IPR014004 Transport-associated and nodulation domain, bacteria YPK_3633 IPR000795 Elongation factor, GTP-binding domain YPK_3633 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPK_3633 IPR004548 Peptide chain release factor 3 YPK_3633 IPR005225 Small GTP-binding protein domain YPK_3633 IPR009000 Translation protein, beta-barrel domain YPK_3633 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3633 IPR031157 YPK_3633 YPK_3633 IPR032090 YPK_3633 YPK_3633 IPR035647 YPK_3633 YPK_3633 IPR038467 YPK_3633 YPK_3634 IPR000182 GNAT domain YPK_3634 IPR006464 Ribosomal-protein-alanine acetyltransferase YPK_3634 IPR016181 Acyl-CoA N-acyltransferase YPK_3635 IPR004615 DNA polymerase III, psi subunit YPK_3635 IPR036654 YPK_3635 YPK_3636 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_3636 IPR007848 Methyltransferase small domain YPK_3636 IPR013675 Methyltransferase small, N-terminal YPK_3636 IPR023543 rRNA small subunit methyltransferase C YPK_3636 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3637 IPR009885 Protein of unknown function DUF1435 YPK_3638 IPR000160 GGDEF domain YPK_3638 IPR029787 Nucleotide cyclase YPK_3639 IPR000070 Pectinesterase, catalytic YPK_3639 IPR011050 Pectin lyase fold/virulence factor YPK_3639 IPR012334 Pectin lyase fold YPK_3642 IPR001036 Acriflavin resistance protein YPK_3642 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3643 IPR003997 RTX secretion protein D, Gram-negative bacteria YPK_3643 IPR006143 RND efflux pump, membrane fusion protein YPK_3643 IPR032317 YPK_3643 YPK_3644 IPR010445 Protein of unknown function DUF1049 YPK_3646 IPR007016 O-antigen ligase-related YPK_3647 IPR002201 Glycosyl transferase, family 9 YPK_3647 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YPK_3648 IPR000577 YPK_3648 YPK_3648 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_3648 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_3648 IPR033676 YPK_3648 YPK_3649 IPR007324 Sugar-binding domain, putative YPK_3649 IPR036388 YPK_3649 YPK_3649 IPR037171 YPK_3649 YPK_3650 IPR003439 ABC transporter-like YPK_3650 IPR003593 AAA+ ATPase domain YPK_3650 IPR017871 ABC transporter, conserved site YPK_3650 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3651 IPR001851 ABC transporter, permease YPK_3652 IPR001851 ABC transporter, permease YPK_3653 IPR025997 Periplasmic binding protein domain YPK_3653 IPR028082 Periplasmic binding protein-like I YPK_3654 IPR002915 DeoC/FbaB/ lacD aldolase YPK_3654 IPR013785 Aldolase-type TIM barrel YPK_3654 IPR033673 YPK_3654 YPK_3655 IPR007138 Antibiotic biosynthesis monooxygenase-like domain YPK_3655 IPR011008 Dimeric alpha-beta barrel YPK_3655 IPR033672 YPK_3655 YPK_3656 IPR019637 Protein of unknown function DUF2501 YPK_3657 IPR000032 Phosphocarrier HPr protein-like YPK_3657 IPR000121 PEP-utilising enzyme, C-terminal YPK_3657 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPK_3657 IPR002178 PTS EIIA type-2 domain YPK_3657 IPR006318 Phosphoenolpyruvate-utilising enzyme YPK_3657 IPR008279 PEP-utilising enzyme, mobile domain YPK_3657 IPR008731 Phosphotransferase system, enzyme I N-terminal YPK_3657 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_3657 IPR016152 Phosphotransferase/anion transporter YPK_3657 IPR018274 PEP-utilising enzyme, active site YPK_3657 IPR023151 PEP-utilising enzyme, conserved site YPK_3657 IPR035895 YPK_3657 YPK_3657 IPR036618 YPK_3657 YPK_3657 IPR036637 YPK_3657 YPK_3658 IPR003352 Phosphotransferase system, EIIC YPK_3658 IPR006327 Phosphotransferase system, fructose IIC component YPK_3659 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPK_3659 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPK_3659 IPR036095 YPK_3659 YPK_3660 IPR003353 Phosphotransferase system, fructose-specific IIB subunit YPK_3660 IPR003501 Phosphotransferase system, EIIB component, type 2/3 YPK_3660 IPR036095 YPK_3660 YPK_3661 IPR009057 Homeodomain-like YPK_3661 IPR018060 DNA binding HTH domain, AraC-type YPK_3661 IPR018062 HTH domain AraC-type, conserved site YPK_3661 IPR020449 Transcription regulator HTH, AraC- type YPK_3663 IPR010295 Protein of unknown function DUF898 YPK_3664 IPR001915 Peptidase M48 YPK_3665 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain YPK_3665 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3665 IPR038333 YPK_3665 YPK_3666 IPR006935 Helicase/UvrB domain YPK_3666 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_3666 IPR022625 Type I restriction and modification enzyme, subunit R, C-terminal YPK_3666 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3668 IPR002104 Integrase, catalytic YPK_3668 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_3668 IPR013762 Integrase-like, catalytic core YPK_3670 IPR025317 Protein of unknown function DUF4222 YPK_3671 IPR019292 5-methylcytosine restriction system component YPK_3672 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_3672 IPR003356 DNA methylase, adenine-specific YPK_3672 IPR004546 Restriction endonuclease, type I, HsdM YPK_3672 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain YPK_3672 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3672 IPR038333 YPK_3672 YPK_3673 IPR000055 Restriction endonuclease, type I, HsdS YPK_3674 IPR004473 Restriction endonuclease, type I, HsdR YPK_3674 IPR006935 Helicase/UvrB domain YPK_3674 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal YPK_3674 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_3674 IPR022625 Type I restriction and modification enzyme, subunit R, C-terminal YPK_3674 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3676 IPR002104 Integrase, catalytic YPK_3676 IPR010998 Integrase, Lambda-type, N-terminal YPK_3676 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_3676 IPR013762 Integrase-like, catalytic core YPK_3676 IPR025166 Domain of unknown function DUF4102 YPK_3676 IPR038488 YPK_3676 YPK_3677 IPR005495 Permease YjgP/YjgQ, predicted YPK_3677 IPR030923 YPK_3677 YPK_3678 IPR005495 Permease YjgP/YjgQ, predicted YPK_3678 IPR030922 YPK_3678 YPK_3679 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YPK_3679 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal YPK_3679 IPR011356 Leucine aminopeptidase/peptidase B YPK_3679 IPR023042 Peptidase M17, leucine aminopeptidase YPK_3680 IPR007459 DNA polymerase III chi subunit, HolC YPK_3680 IPR036768 YPK_3680 YPK_3681 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YPK_3681 IPR002300 Aminoacyl-tRNA synthetase, class Ia YPK_3681 IPR002303 Valine-tRNA ligase YPK_3681 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YPK_3681 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YPK_3681 IPR010978 tRNA-binding arm YPK_3681 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YPK_3681 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3681 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm YPK_3681 IPR037118 YPK_3681 YPK_3682 IPR000182 GNAT domain YPK_3682 IPR016181 Acyl-CoA N-acyltransferase YPK_3683 IPR009671 Regulator of ribonuclease activity B domain YPK_3683 IPR016716 Regulator of ribonuclease activity B YPK_3683 IPR036701 YPK_3683 YPK_3684 IPR002292 Ornithine/putrescine carbamoyltransferase YPK_3684 IPR006130 Aspartate/ornithine carbamoyltransferase YPK_3684 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YPK_3684 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YPK_3684 IPR024904 Ornithine carbamoyltransferase YPK_3684 IPR036901 YPK_3684 YPK_3685 IPR004375 Conserved hypothetical protein CHP00022 YPK_3685 IPR037012 YPK_3685 YPK_3686 IPR000914 Bacterial extracellular solute-binding protein, family 5 YPK_3686 IPR030678 YPK_3686 YPK_3687 IPR000515 MetI-like domain YPK_3687 IPR035906 YPK_3687 YPK_3688 IPR000515 MetI-like domain YPK_3688 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_3688 IPR035906 YPK_3688 YPK_3689 IPR003439 ABC transporter-like YPK_3689 IPR003593 AAA+ ATPase domain YPK_3689 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3690 IPR003439 ABC transporter-like YPK_3690 IPR003593 AAA+ ATPase domain YPK_3690 IPR017871 ABC transporter, conserved site YPK_3690 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3691 IPR005144 ATP-cone YPK_3691 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic YPK_3691 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPK_3692 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic YPK_3693 IPR000524 Transcription regulator HTH, GntR YPK_3693 IPR011663 UbiC transcription regulator-associated YPK_3693 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YPK_3693 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPK_3693 IPR036388 YPK_3693 YPK_3693 IPR036390 YPK_3693 YPK_3694 IPR009609 Phosphonate metabolism PhnG YPK_3695 IPR008772 Bacterial phosphonate metabolism, PhnH YPK_3695 IPR038058 YPK_3695 YPK_3696 IPR008773 Phosphonate metabolism protein PhnI YPK_3697 IPR010306 Phosphonate metabolism PhnJ YPK_3698 IPR003439 ABC transporter-like YPK_3698 IPR003593 AAA+ ATPase domain YPK_3698 IPR012700 Phosphonate C-P lyase system, PhnK YPK_3698 IPR017871 ABC transporter, conserved site YPK_3698 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3699 IPR003439 ABC transporter-like YPK_3699 IPR003593 AAA+ ATPase domain YPK_3699 IPR012701 Phosphonate C-P lyase system, PhnL YPK_3699 IPR017871 ABC transporter, conserved site YPK_3699 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3700 IPR011059 Metal-dependent hydrolase, composite domain YPK_3700 IPR012696 Phosphonate metabolism PhnM YPK_3700 IPR013108 Amidohydrolase 3 YPK_3700 IPR032466 YPK_3700 YPK_3701 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPK_3701 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN YPK_3701 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3702 IPR001279 Beta-lactamase-like YPK_3702 IPR017693 Phosphonate metabolism protein PhnP YPK_3702 IPR036866 YPK_3702 YPK_3703 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPK_3703 IPR036291 YPK_3703 YPK_3704 IPR011194 Uncharacterised protein family UPF0306 YPK_3704 IPR012349 FMN-binding split barrel YPK_3705 IPR008397 Alginate lyase domain YPK_3705 IPR008929 Chondroitin AC/alginate lyase YPK_3706 IPR003439 ABC transporter-like YPK_3706 IPR003593 AAA+ ATPase domain YPK_3706 IPR008995 Molybdate/tungstate binding, C-terminal YPK_3706 IPR013611 Transport-associated OB, type 2 YPK_3706 IPR017871 ABC transporter, conserved site YPK_3706 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3707 IPR000515 MetI-like domain YPK_3707 IPR035906 YPK_3707 YPK_3708 IPR000515 MetI-like domain YPK_3708 IPR035906 YPK_3708 YPK_3709 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_3710 IPR008397 Alginate lyase domain YPK_3710 IPR008929 Chondroitin AC/alginate lyase YPK_3711 IPR008397 Alginate lyase domain YPK_3711 IPR008929 Chondroitin AC/alginate lyase YPK_3711 IPR012480 Heparinase II/III-like YPK_3712 IPR000305 GIY-YIG nuclease superfamily YPK_3712 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease YPK_3712 IPR035901 YPK_3712 YPK_3713 IPR000182 GNAT domain YPK_3713 IPR016181 Acyl-CoA N-acyltransferase YPK_3714 IPR003033 SCP2 sterol-binding domain YPK_3714 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT YPK_3714 IPR036527 YPK_3714 YPK_3715 IPR001539 Peptidase U32 YPK_3715 IPR036206 YPK_3715 YPK_3716 IPR001539 Peptidase U32 YPK_3717 IPR003423 Outer membrane efflux protein YPK_3717 IPR010131 RND efflux system, outer membrane lipoprotein, NodT YPK_3718 IPR001036 Acriflavin resistance protein YPK_3718 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 YPK_3718 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3719 IPR006143 RND efflux pump, membrane fusion protein YPK_3719 IPR032317 YPK_3719 YPK_3720 IPR011251 Luciferase-like domain YPK_3720 IPR019949 Luciferase family oxidoreductase, group 1 YPK_3720 IPR036661 YPK_3720 YPK_3722 IPR001387 Cro/C1-type helix-turn-helix domain YPK_3722 IPR010982 Lambda repressor-like, DNA-binding domain YPK_3723 IPR009241 Addiction module killer protein YPK_3724 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPK_3724 IPR001650 Helicase, C-terminal YPK_3724 IPR005580 DbpA, RNA-binding YPK_3724 IPR011545 DEAD/DEAH box helicase domain YPK_3724 IPR012677 Nucleotide-binding, alpha-beta plait YPK_3724 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_3724 IPR021046 Cold-shock protein, DEAD box A, C-terminal YPK_3724 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3724 IPR028618 ATP-dependent RNA helicase DeaD YPK_3725 IPR011990 Tetratricopeptide-like helical domain YPK_3725 IPR013105 Tetratricopeptide TPR2 YPK_3725 IPR019734 Tetratricopeptide repeat YPK_3725 IPR023605 Lipoprotein NlpI YPK_3726 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPK_3726 IPR003029 Ribosomal protein S1, RNA-binding domain YPK_3726 IPR004087 K Homology domain YPK_3726 IPR004088 K Homology domain, type 1 YPK_3726 IPR012162 Polyribonucleotide nucleotidyltransferase YPK_3726 IPR012340 Nucleic acid-binding, OB-fold YPK_3726 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPK_3726 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain YPK_3726 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3726 IPR022967 RNA-binding domain, S1 YPK_3726 IPR027408 PNPase/RNase PH domain YPK_3726 IPR036345 YPK_3726 YPK_3726 IPR036456 YPK_3726 YPK_3726 IPR036612 YPK_3726 YPK_3727 IPR000589 Ribosomal protein S15 YPK_3727 IPR005290 Ribosomal protein S15, bacterial-type YPK_3727 IPR009068 S15/NS1, RNA-binding YPK_3728 IPR002501 Pseudouridine synthase II YPK_3728 IPR014780 tRNA pseudouridine synthase II, TruB YPK_3728 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal YPK_3728 IPR015947 PUA-like domain YPK_3728 IPR020103 Pseudouridine synthase, catalytic domain YPK_3728 IPR032819 YPK_3728 YPK_3728 IPR036974 YPK_3728 YPK_3729 IPR000238 Ribosome-binding factor A YPK_3729 IPR015946 K homology domain-like, alpha/beta YPK_3729 IPR020053 Ribosome-binding factor A, conserved site YPK_3729 IPR023799 Ribosome-binding factor A domain YPK_3730 IPR000178 Translation initiation factor aIF-2, bacterial-like YPK_3730 IPR000795 Elongation factor, GTP-binding domain YPK_3730 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPK_3730 IPR005225 Small GTP-binding protein domain YPK_3730 IPR006847 Translation initiation factor IF-2, N-terminal YPK_3730 IPR009000 Translation protein, beta-barrel domain YPK_3730 IPR009061 DNA binding domain, putative YPK_3730 IPR013575 Initiation factor 2 associated domain, bacterial YPK_3730 IPR023115 Translation initiation factor IF- 2, domain 3 YPK_3730 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3730 IPR036925 YPK_3730 YPK_3731 IPR004087 K Homology domain YPK_3731 IPR009019 K homology domain, prokaryotic type YPK_3731 IPR010213 Transcription termination factor NusA YPK_3731 IPR010214 Transcription termination factor NusA, C-terminal duplication YPK_3731 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical YPK_3731 IPR012340 Nucleic acid-binding, OB-fold YPK_3731 IPR013735 Transcription factor NusA, N-terminal YPK_3731 IPR015946 K homology domain-like, alpha/beta YPK_3731 IPR022967 RNA-binding domain, S1 YPK_3731 IPR025249 KH domain, NusA-like YPK_3731 IPR030842 YPK_3731 YPK_3731 IPR036555 YPK_3731 YPK_3732 IPR003728 Ribosome maturation factor RimP YPK_3732 IPR028989 Ribosome maturation factor RimP, N-terminal YPK_3732 IPR028998 Ribosome maturation factor RimP, C-terminal YPK_3732 IPR035956 YPK_3732 YPK_3732 IPR036847 YPK_3732 YPK_3733 IPR004692 Preprotein translocase SecG subunit YPK_3734 IPR005841 Alpha-D-phosphohexomutase superfamily YPK_3734 IPR005843 Alpha-D-phosphohexomutase, C-terminal YPK_3734 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I YPK_3734 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II YPK_3734 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III YPK_3734 IPR006352 Phosphoglucosamine mutase YPK_3734 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III YPK_3734 IPR016066 Alpha-D-phosphohexomutase, conserved site YPK_3734 IPR036900 YPK_3734 YPK_3735 IPR000489 Pterin-binding YPK_3735 IPR006390 Dihydropteroate synthase YPK_3735 IPR011005 Dihydropteroate synthase-like YPK_3736 IPR000642 Peptidase M41 YPK_3736 IPR003593 AAA+ ATPase domain YPK_3736 IPR003959 ATPase, AAA-type, core YPK_3736 IPR003960 ATPase, AAA-type, conserved site YPK_3736 IPR005936 Peptidase, FtsH YPK_3736 IPR011546 Peptidase M41, FtsH extracellular YPK_3736 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3736 IPR037219 YPK_3736 YPK_3737 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YPK_3737 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria YPK_3737 IPR015507 Ribosomal RNA large subunit methyltransferase E YPK_3737 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3738 IPR001890 RNA-binding, CRM domain YPK_3738 IPR017924 RNA-binding protein YhbY YPK_3738 IPR035920 YPK_3738 YPK_3739 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YPK_3739 IPR006359 Transcription elongation factor GreA YPK_3739 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YPK_3739 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YPK_3739 IPR023459 Transcription elongation factor GreA/GreB family YPK_3739 IPR028624 Transcription elongation factor GreA/GreB YPK_3739 IPR036805 YPK_3739 YPK_3739 IPR036953 YPK_3739 YPK_3740 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C YPK_3740 IPR012338 Beta-lactamase/transpeptidase-like YPK_3741 IPR001789 Signal transduction response regulator, receiver domain YPK_3741 IPR001867 Signal transduction response regulator, C-terminal YPK_3741 IPR011006 CheY-like superfamily YPK_3741 IPR036388 YPK_3741 YPK_3742 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_3742 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_3742 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_3742 IPR036097 YPK_3742 YPK_3742 IPR036890 YPK_3742 YPK_3743 IPR006073 GTP binding domain YPK_3743 IPR006074 GTP1/OBG, conserved site YPK_3743 IPR006169 GTP1/OBG domain YPK_3743 IPR014100 GTP-binding protein Obg/CgtA YPK_3743 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3743 IPR035101 YPK_3743 YPK_3743 IPR036726 YPK_3743 YPK_3746 IPR005335 Terminase small subunit YPK_3750 IPR013557 AntA/AntB antirepressor YPK_3752 IPR010260 Bacteriophage P4, Orf88 YPK_3754 IPR002104 Integrase, catalytic YPK_3754 IPR010998 Integrase, Lambda-type, N-terminal YPK_3754 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_3754 IPR013762 Integrase-like, catalytic core YPK_3754 IPR025166 Domain of unknown function DUF4102 YPK_3754 IPR038488 YPK_3754 YPK_3755 IPR000620 Drug/metabolite transporter YPK_3756 IPR001684 Ribosomal protein L27 YPK_3756 IPR018261 Ribosomal protein L27, conserved site YPK_3757 IPR001787 Ribosomal protein L21 YPK_3757 IPR018258 Ribosomal protein L21, conserved site YPK_3757 IPR028909 Ribosomal protein L21-like YPK_3757 IPR036164 YPK_3757 YPK_3758 IPR000092 Polyprenyl synthetase YPK_3758 IPR008949 Terpenoid synthase YPK_3758 IPR033749 YPK_3758 YPK_3759 IPR003314 Transposase MuA/Repressor CI, DNA-binding YPK_3759 IPR009061 DNA binding domain, putative YPK_3759 IPR036388 YPK_3759 YPK_3760 IPR010982 Lambda repressor-like, DNA-binding domain YPK_3760 IPR038722 YPK_3760 YPK_3761 IPR001236 Lactate/malate dehydrogenase, N-terminal YPK_3761 IPR001252 Malate dehydrogenase, active site YPK_3761 IPR001557 L-lactate/malate dehydrogenase YPK_3761 IPR010097 Malate dehydrogenase, type 1 YPK_3761 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YPK_3761 IPR022383 Lactate/malate dehydrogenase, C-terminal YPK_3761 IPR023958 Malate dehydrogenase, type 1, bacterial YPK_3761 IPR036291 YPK_3761 YPK_3762 IPR001669 Arginine repressor YPK_3762 IPR020899 Arginine repressor, C-terminal YPK_3762 IPR020900 Arginine repressor, DNA-binding domain YPK_3762 IPR036251 YPK_3762 YPK_3762 IPR036388 YPK_3762 YPK_3762 IPR036390 YPK_3762 YPK_3763 IPR010854 Domain of unknown function DUF1471 YPK_3763 IPR025543 Dodecin-like YPK_3763 IPR036275 YPK_3763 YPK_3765 IPR000713 Mur ligase, N-terminal YPK_3765 IPR004101 Mur ligase, C-terminal YPK_3765 IPR005757 Murein peptide ligase YPK_3765 IPR013221 Mur ligase, central YPK_3765 IPR036565 YPK_3765 YPK_3765 IPR036615 YPK_3765 YPK_3766 IPR000146 Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase YPK_3766 IPR020548 Fructose-1,6-bisphosphatase, active site YPK_3766 IPR028343 Fructose-1,6-bisphosphatase YPK_3766 IPR033391 YPK_3766 YPK_3767 IPR008162 Inorganic pyrophosphatase YPK_3767 IPR036649 YPK_3767 YPK_3768 IPR009288 AIG2-like YPK_3768 IPR036568 YPK_3768 YPK_3769 IPR007452 Protein of unknown function DUF490 YPK_3770 IPR000184 Bacterial surface antigen (D15) YPK_3770 IPR010827 Surface antigen variable number YPK_3770 IPR035243 YPK_3770 YPK_3771 IPR002569 Peptide methionine sulphoxide reductase MsrA YPK_3771 IPR036509 YPK_3771 YPK_3772 IPR000644 CBS domain YPK_3772 IPR002550 Domain of unknown function DUF21 YPK_3772 IPR005170 Transporter-associated domain YPK_3772 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YPK_3772 IPR036318 YPK_3772 YPK_3773 IPR009491 Protein of unknown function DUF1107 YPK_3774 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YPK_3774 IPR036249 YPK_3774 YPK_3775 IPR000760 Inositol monophosphatase YPK_3775 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial YPK_3775 IPR020550 Inositol monophosphatase, conserved site YPK_3775 IPR020583 Inositol monophosphatase, metal-binding site YPK_3776 IPR004843 Calcineurin-like phosphoesterase domain, apaH type YPK_3776 IPR006146 5'-Nucleotidase, conserved site YPK_3776 IPR006179 5'-Nucleotidase/apyrase YPK_3776 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase YPK_3776 IPR008334 5'-Nucleotidase, C-terminal YPK_3776 IPR029052 Metallo-dependent phosphatase-like YPK_3776 IPR036907 YPK_3776 YPK_3777 IPR012312 Haemerythrin/HHE cation-binding motif YPK_3777 IPR019903 Repair of iron centres family YPK_3777 IPR023742 Iron-sulfur cluster repair protein YftE YPK_3778 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YPK_3778 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain YPK_3778 IPR036944 YPK_3778 YPK_3779 IPR007340 Opacity-associated protein A YPK_3779 IPR013731 Opacity-associated protein A, N-terminal YPK_3780 IPR022231 Protein of unknown function DUF3757 YPK_3781 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YPK_3781 IPR020069 Ribosomal protein L9, C-terminal YPK_3781 IPR020070 Ribosomal protein L9, N-terminal YPK_3781 IPR020594 Ribosomal protein L9, bacteria/chloroplast YPK_3781 IPR036791 YPK_3781 YPK_3781 IPR036935 YPK_3781 YPK_3782 IPR001648 Ribosomal protein S18 YPK_3782 IPR018275 Ribosomal protein S18, conserved site YPK_3782 IPR036870 YPK_3782 YPK_3783 IPR012340 Nucleic acid-binding, OB-fold YPK_3783 IPR023646 Primosomal replication protein PriB YPK_3784 IPR000529 Ribosomal protein S6 YPK_3784 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YPK_3784 IPR020814 Ribosomal protein S6, plastid/chloroplast YPK_3784 IPR020815 Ribosomal protein S6, conserved site YPK_3784 IPR035980 YPK_3784 YPK_3786 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain YPK_3786 IPR029058 Alpha/Beta hydrolase fold YPK_3787 IPR010854 Domain of unknown function DUF1471 YPK_3787 IPR025543 Dodecin-like YPK_3787 IPR036275 YPK_3787 YPK_3788 IPR006089 Acyl-CoA dehydrogenase, conserved site YPK_3788 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain YPK_3788 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal YPK_3788 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain YPK_3788 IPR036250 YPK_3788 YPK_3790 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPK_3790 IPR004441 RNA methyltransferase TrmH family YPK_3790 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YPK_3790 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YPK_3790 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_3790 IPR029028 Alpha/beta knot methyltransferases YPK_3790 IPR029064 50S ribosomal protein L30e-like YPK_3791 IPR001900 YPK_3791 YPK_3791 IPR003029 Ribosomal protein S1, RNA-binding domain YPK_3791 IPR004476 Ribonuclease II/ribonuclease R YPK_3791 IPR011129 Cold shock protein YPK_3791 IPR011805 Ribonuclease R YPK_3791 IPR012340 Nucleic acid-binding, OB-fold YPK_3791 IPR013223 Ribonuclease B, N-terminal OB domain YPK_3791 IPR013668 Ribonuclease R winged-helix domain YPK_3791 IPR022967 RNA-binding domain, S1 YPK_3792 IPR000944 Transcription regulator Rrf2-like YPK_3792 IPR023761 Transcriptional repressor HTH, NsrR YPK_3792 IPR030489 YPK_3792 YPK_3792 IPR036388 YPK_3792 YPK_3792 IPR036390 YPK_3792 YPK_3793 IPR001114 Adenylosuccinate synthetase YPK_3793 IPR018220 Adenylosuccinate synthase, active site YPK_3793 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3793 IPR033128 YPK_3793 YPK_3794 IPR019201 Protein of unknown function DUF2065 YPK_3795 IPR001107 Band 7 protein YPK_3795 IPR010200 HflC YPK_3795 IPR036013 YPK_3795 YPK_3796 IPR001107 Band 7 protein YPK_3796 IPR001972 Stomatin family YPK_3796 IPR010201 HflK YPK_3796 IPR020980 Menbrane protein HflK, N-terminal YPK_3796 IPR036013 YPK_3796 YPK_3797 IPR006073 GTP binding domain YPK_3797 IPR016496 GTPase HflX YPK_3797 IPR025121 GTPase HflX N-terminal domain YPK_3797 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3797 IPR032305 YPK_3797 YPK_3797 IPR035647 YPK_3797 YPK_3799 IPR005001 Host factor Hfq YPK_3799 IPR010920 Like-Sm (LSM) domain YPK_3800 IPR018022 tRNA delta(2)-isopentenylpyrophosphate transferase YPK_3800 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3801 IPR002099 DNA mismatch repair protein family YPK_3801 IPR013507 DNA mismatch repair protein, C-terminal YPK_3801 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3801 IPR014762 DNA mismatch repair, conserved site YPK_3801 IPR014790 MutL, C-terminal, dimerisation YPK_3801 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3801 IPR020667 DNA mismatch repair protein, MutL YPK_3801 IPR036890 YPK_3801 YPK_3801 IPR037198 YPK_3801 YPK_3802 IPR002508 Cell wall hydrolase/autolysin, catalytic YPK_3802 IPR018392 LysM domain YPK_3802 IPR021731 AMIN domain YPK_3802 IPR036779 YPK_3802 YPK_3803 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE YPK_3803 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3804 IPR000631 YjeF C-terminal domain YPK_3804 IPR004443 YjeF N-terminal domain YPK_3804 IPR029056 Ribokinase-like YPK_3804 IPR030677 YPK_3804 YPK_3804 IPR036652 YPK_3804 YPK_3805 IPR004453 Epoxyqueuosine reductase QueG YPK_3805 IPR009051 Alpha-helical ferredoxin YPK_3805 IPR013542 Domain of unknown function DUF1730 YPK_3805 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3808 IPR012337 Ribonuclease H-like domain YPK_3808 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_3808 IPR022894 Oligoribonuclease YPK_3808 IPR036397 YPK_3808 YPK_3809 IPR004881 Ribosome biogenesis GTPase RsgA, putative YPK_3809 IPR010914 EngC GTPase YPK_3809 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3810 IPR003817 Phosphatidylserine decarboxylase-related YPK_3810 IPR033177 YPK_3810 YPK_3810 IPR033178 YPK_3810 YPK_3811 IPR006685 Mechanosensitive ion channel MscS YPK_3811 IPR006686 Mechanosensitive ion channel MscS, conserved site YPK_3811 IPR010920 Like-Sm (LSM) domain YPK_3811 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 YPK_3811 IPR011066 Mechanosensitive ion channel MscS, C-terminal YPK_3811 IPR023408 YPK_3811 YPK_3811 IPR024393 Mechanosensitive ion channel MscS, porin domain YPK_3811 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPK_3812 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YPK_3812 IPR004525 Elongation factor P--(R)-beta-lysine ligase YPK_3812 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal YPK_3813 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YPK_3813 IPR003953 FAD binding domain YPK_3813 IPR005884 Fumarate reductase, flavoprotein subunit YPK_3813 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YPK_3813 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YPK_3813 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain YPK_3813 IPR036188 YPK_3813 YPK_3813 IPR037099 YPK_3813 YPK_3814 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YPK_3814 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YPK_3814 IPR009051 Alpha-helical ferredoxin YPK_3814 IPR012675 Beta-grasp domain YPK_3814 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3814 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3814 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YPK_3814 IPR036010 YPK_3814 YPK_3815 IPR003510 Fumarate reductase, subunit C YPK_3815 IPR034804 YPK_3815 YPK_3816 IPR003418 Fumarate reductase, D subunit YPK_3816 IPR034804 YPK_3816 YPK_3817 IPR000390 Small multidrug resistance protein family YPK_3818 IPR001059 Translation elongation factor P/YeiP, central YPK_3818 IPR008991 Translation protein SH3-like domain YPK_3818 IPR011768 Translation elongation factor P YPK_3818 IPR012340 Nucleic acid-binding, OB-fold YPK_3818 IPR013185 Translation elongation factor, KOW-like YPK_3818 IPR013852 Translation elongation factor P/YeiP, conserved site YPK_3818 IPR014722 Ribosomal protein L2 domain 2 YPK_3818 IPR015365 Elongation factor P, C-terminal YPK_3818 IPR020599 Translation elongation factor P/YeiP YPK_3819 IPR003739 Lysine-2,3-aminomutase family YPK_3819 IPR007197 Radical SAM YPK_3819 IPR013785 Aldolase-type TIM barrel YPK_3819 IPR022462 Lysine-2,3-aminomutase-like YPK_3821 IPR025294 Protein of unknown function DUF4156 YPK_3822 IPR001844 Chaperonin Cpn60 YPK_3822 IPR002423 Chaperonin Cpn60/TCP-1 YPK_3822 IPR018370 Chaperonin Cpn60, conserved site YPK_3822 IPR027409 GroEL-like apical domain YPK_3822 IPR027410 TCP-1-like chaperonin intermediate domain YPK_3822 IPR027413 GroEL-like equatorial domain YPK_3823 IPR011032 GroES (chaperonin 10)-like YPK_3823 IPR018369 Chaperonin Cpn10, conserved site YPK_3823 IPR020818 Chaperonin Cpn10 YPK_3823 IPR037124 YPK_3823 YPK_3824 IPR007313 FxsA cytoplasmic membrane protein YPK_3825 IPR000362 Fumarate lyase family YPK_3825 IPR004708 Aspartate ammonia-lyase YPK_3825 IPR008948 L-Aspartase-like YPK_3825 IPR018951 Fumarase C, C-terminal YPK_3825 IPR020557 Fumarate lyase, conserved site YPK_3825 IPR022761 Fumarate lyase, N-terminal YPK_3825 IPR024083 Fumarase/histidase, N-terminal YPK_3826 IPR004668 Anaerobic c4-dicarboxylate membrane transporter YPK_3827 IPR004323 Divalent ion tolerance protein, CutA YPK_3827 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPK_3827 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPK_3827 IPR023700 Divalent cation tolerance protein CutA, bacteria YPK_3828 IPR003834 Cytochrome c assembly protein, transmembrane domain YPK_3828 IPR017937 Thioredoxin, conserved site YPK_3828 IPR022910 Thiol:disulphide interchange protein DsbD YPK_3828 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YPK_3828 IPR036249 YPK_3828 YPK_3828 IPR036929 YPK_3828 YPK_3829 IPR006478 Formate dehydrogenase, alpha subunit YPK_3829 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site YPK_3829 IPR006656 Molybdopterin oxidoreductase YPK_3829 IPR006657 Molydopterin dinucleotide-binding domain YPK_3829 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain YPK_3829 IPR009010 Aspartate decarboxylase-like domain YPK_3829 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site YPK_3830 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3830 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3831 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 YPK_3831 IPR009051 Alpha-helical ferredoxin YPK_3831 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3831 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3831 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_3831 IPR028261 Dihydroprymidine dehydrogenase domain II YPK_3831 IPR036188 YPK_3831 YPK_3832 IPR001647 DNA-binding HTH domain, TetR-type YPK_3832 IPR009057 Homeodomain-like YPK_3832 IPR036271 YPK_3832 YPK_3834 IPR004954 Peptidase M60, viral enhancin protein YPK_3834 IPR031161 YPK_3834 YPK_3837 IPR008992 Enterotoxin YPK_3838 IPR005063 Transposase, IS1 YPK_3840 IPR004673 L-rhamnose-proton symport, RhaT YPK_3841 IPR003313 AraC-type arabinose-binding/dimerisation domain YPK_3841 IPR009057 Homeodomain-like YPK_3841 IPR011051 RmlC-like cupin domain YPK_3841 IPR014710 RmlC-like jelly roll fold YPK_3841 IPR018060 DNA binding HTH domain, AraC-type YPK_3841 IPR018062 HTH domain AraC-type, conserved site YPK_3841 IPR020449 Transcription regulator HTH, AraC- type YPK_3841 IPR023699 Transcription activator HTH, RhaR YPK_3842 IPR003313 AraC-type arabinose-binding/dimerisation domain YPK_3842 IPR009057 Homeodomain-like YPK_3842 IPR014710 RmlC-like jelly roll fold YPK_3842 IPR018060 DNA binding HTH domain, AraC-type YPK_3842 IPR018062 HTH domain AraC-type, conserved site YPK_3842 IPR020449 Transcription regulator HTH, AraC- type YPK_3842 IPR023609 Transcription regulator HTH, RhaS YPK_3842 IPR037923 YPK_3842 YPK_3845 IPR000577 YPK_3845 YPK_3845 IPR013449 Rhamnulokinase YPK_3845 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_3845 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_3846 IPR009308 Rhamnose isomerase YPK_3846 IPR036237 YPK_3846 YPK_3847 IPR001303 Class II aldolase/adducin N-terminal YPK_3847 IPR013447 Rhamnulose-1-phosphate aldolase YPK_3847 IPR036409 YPK_3847 YPK_3848 IPR001670 Alcohol dehydrogenase, iron-type YPK_3848 IPR013460 Lactaldehyde reductase YPK_3848 IPR018211 Alcohol dehydrogenase, iron-type, conserved site YPK_3849 IPR008000 Rhamnose mutarotase YPK_3849 IPR011008 Dimeric alpha-beta barrel YPK_3849 IPR013448 L-rhamnose 1-epimerase YPK_3850 IPR000424 Primosome PriB/single-strand DNA-binding YPK_3850 IPR011344 Single-stranded DNA-binding protein YPK_3850 IPR012340 Nucleic acid-binding, OB-fold YPK_3851 IPR003439 ABC transporter-like YPK_3851 IPR004602 UvrABC system subunit A YPK_3851 IPR017871 ABC transporter, conserved site YPK_3851 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3852 IPR007351 Uncharacterised protein YjbR YPK_3852 IPR038056 YPK_3852 YPK_3853 IPR000796 Aspartate/other aminotransferase YPK_3853 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YPK_3853 IPR004839 Aminotransferase, class I/classII YPK_3853 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_3853 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_3853 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3854 IPR000821 Alanine racemase YPK_3854 IPR001608 Alanine racemase, N-terminal YPK_3854 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal YPK_3854 IPR011079 Alanine racemase, C-terminal YPK_3854 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site YPK_3854 IPR029066 PLP-binding barrel YPK_3855 IPR003593 AAA+ ATPase domain YPK_3855 IPR007692 DNA helicase, DnaB type YPK_3855 IPR007693 DNA helicase, DnaB-like, N-terminal YPK_3855 IPR007694 DNA helicase, DnaB-like, C-terminal YPK_3855 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPK_3855 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3855 IPR036185 YPK_3855 YPK_3856 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site YPK_3856 IPR011032 GroES (chaperonin 10)-like YPK_3856 IPR013149 Alcohol dehydrogenase, C-terminal YPK_3856 IPR013154 Alcohol dehydrogenase GroES-like YPK_3856 IPR020843 Polyketide synthase, enoylreductase YPK_3856 IPR036291 YPK_3856 YPK_3857 IPR014318 Phage shock protein, PspG YPK_3858 IPR001269 tRNA-dihydrouridine synthase YPK_3858 IPR004653 tRNA-dihydrouridine synthase, TIM-barrel, YjbN YPK_3858 IPR013785 Aldolase-type TIM barrel YPK_3858 IPR018517 tRNA-dihydrouridine synthase, conserved site YPK_3859 IPR002481 Ferric-uptake regulator YPK_3859 IPR036388 YPK_3859 YPK_3859 IPR036390 YPK_3859 YPK_3860 IPR006197 Peptidase S24, LexA-like YPK_3860 IPR006199 LexA repressor, DNA-binding domain YPK_3860 IPR006200 LexA repressor YPK_3860 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_3860 IPR036286 YPK_3860 YPK_3860 IPR036388 YPK_3860 YPK_3860 IPR036390 YPK_3860 YPK_3861 IPR000829 Diacylglycerol kinase, prokaryotic YPK_3861 IPR036945 YPK_3861 YPK_3862 IPR002123 Phospholipid/glycerol acyltransferase YPK_3862 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase YPK_3862 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB YPK_3863 IPR000537 UbiA prenyltransferase family YPK_3863 IPR006370 4-hydroxybenzoate polyprenyl transferase YPK_3863 IPR030470 YPK_3863 YPK_3864 IPR007440 Chorismate--pyruvate lyase YPK_3864 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain YPK_3865 IPR005546 Autotransporter beta-domain YPK_3865 IPR006315 Outer membrane autotransporter barrel YPK_3865 IPR011050 Pectin lyase fold/virulence factor YPK_3865 IPR012332 P22 tailspike C-terminal domain-like YPK_3865 IPR036709 YPK_3865 YPK_3866 IPR003961 Fibronectin, type III YPK_3866 IPR006094 FAD linked oxidase, N-terminal YPK_3866 IPR012951 Berberine/berberine-like YPK_3866 IPR013783 Immunoglobulin-like fold YPK_3866 IPR036116 YPK_3866 YPK_3866 IPR036318 YPK_3866 YPK_3866 IPR036573 YPK_3866 YPK_3867 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain YPK_3869 IPR008962 PapD-like YPK_3869 IPR013783 Immunoglobulin-like fold YPK_3869 IPR016147 PapD, N-terminal, bacterial YPK_3869 IPR036316 YPK_3869 YPK_3870 IPR000015 Outer membrane usher protein YPK_3870 IPR018030 Fimbrial membrane usher, conserved site YPK_3870 IPR025885 PapC, N-terminal domain YPK_3870 IPR025949 PapC-like, C-terminal domain YPK_3870 IPR037224 YPK_3870 YPK_3871 IPR010546 Protein of unknown function DUF1120 YPK_3872 IPR003325 TerD domain YPK_3873 IPR003325 TerD domain YPK_3874 IPR005496 Integral membrane protein TerC YPK_3874 IPR022369 Integral membrane protein TerC, riboswitch-linked YPK_3875 IPR007791 Heat shock protein DnaJ-like protein DjlA YPK_3875 IPR029024 TerB-like YPK_3876 IPR003325 TerD domain YPK_3876 IPR017115 Tellurite resistance, TerA YPK_3877 IPR003325 TerD domain YPK_3878 IPR011226 ATP-grasp family YPK_3879 IPR011214 Uncharacterised conserved protein UCP020967 YPK_3879 IPR022537 TRSP domain YPK_3879 IPR029057 Phosphoribosyltransferase-like YPK_3880 IPR023214 HAD-like domain YPK_3880 IPR024197 Uncharacterised conserved protein UCP030802 YPK_3880 IPR036412 YPK_3880 YPK_3881 IPR011215 Phosphoribosyl transferase YPK_3881 IPR028157 PELOTA RNA-binding domain YPK_3882 IPR011206 Citrate lyase beta subunit-like YPK_3882 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_3882 IPR039480 YPK_3882 YPK_3883 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YPK_3883 IPR036390 YPK_3883 YPK_3884 IPR003171 Methylenetetrahydrofolate reductase YPK_3884 IPR029041 FAD-linked oxidoreductase-like YPK_3885 IPR006638 Elongator protein 3/MiaB/NifB YPK_3885 IPR007197 Radical SAM YPK_3885 IPR023404 Radical SAM, alpha/beta horseshoe YPK_3885 IPR026332 Putative heme utilization radical SAM enzyme HutW YPK_3886 IPR010413 Heme utilization carrier protein HutX like YPK_3887 IPR016040 NAD(P)-binding domain YPK_3887 IPR036291 YPK_3887 YPK_3888 IPR019600 Hemin uptake protein HemP YPK_3889 IPR000531 TonB-dependent receptor, beta-barrel YPK_3889 IPR010916 TonB box, conserved site YPK_3889 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPK_3889 IPR011276 TonB-dependent haem/haemoglobin receptor YPK_3889 IPR012910 TonB-dependent receptor, plug YPK_3889 IPR036942 YPK_3889 YPK_3889 IPR037066 YPK_3889 YPK_3890 IPR007845 Haemin-degrading HemS/ChuX domain YPK_3891 IPR002491 ABC transporter periplasmic binding domain YPK_3892 IPR000522 ABC transporter, permease protein YPK_3892 IPR037294 YPK_3892 YPK_3893 IPR003439 ABC transporter-like YPK_3893 IPR003593 AAA+ ATPase domain YPK_3893 IPR017871 ABC transporter, conserved site YPK_3893 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3894 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPK_3894 IPR006233 Cystathionine beta-lyase, bacterial YPK_3894 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_3894 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_3894 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3896 IPR000847 Transcription regulator HTH, LysR YPK_3896 IPR005119 LysR, substrate-binding YPK_3896 IPR036388 YPK_3896 YPK_3896 IPR036390 YPK_3896 YPK_3897 IPR001455 TusA-like domain YPK_3897 IPR036868 YPK_3897 YPK_3898 IPR007272 Sulphur transport domain YPK_3899 IPR006135 Type III secretion system substrate exporter YPK_3899 IPR006307 Type III exporter system, secretion apparatus protein BsaZ YPK_3899 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_3900 IPR002010 Type III secretion system inner membrane R protein YPK_3900 IPR006304 Type III secretion protein SpaR/YscT YPK_3901 IPR002191 Bacterial export protein family 3 YPK_3901 IPR006306 Type III secretion protein HrpO YPK_3902 IPR005773 Yop virulence translocation protein R YPK_3902 IPR005838 Type III secretion system inner membrane P protein YPK_3903 IPR001543 Surface presentation of antigen (SpoA) YPK_3903 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO YPK_3903 IPR036429 YPK_3903 YPK_3906 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPK_3906 IPR003593 AAA+ ATPase domain YPK_3906 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YPK_3906 IPR005714 ATPase, type III secretion system, FliI/YscN YPK_3906 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPK_3906 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3907 IPR001712 Type III secretion system FHIPEP YPK_3907 IPR006302 Type III secretion protein HrcV YPK_3907 IPR025505 FHIPEP conserved site YPK_3908 IPR009335 Type III secretion system HrpE /V-type ATP synthase subunit E YPK_3908 IPR012842 Type III secretion system HrpE/YscL YPK_3909 IPR025292 Type III secretion system protein YPK_3910 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ YPK_3910 IPR006182 Secretory protein YscJ/FliF YPK_3911 IPR012670 Type III secretion system, YscI/HrpB YPK_3912 IPR010437 Type III secretion system SsaH YPK_3913 IPR011841 Type III secretion system, needle protein YPK_3913 IPR021123 Type III secretion, needle-protein-like YPK_3913 IPR037203 YPK_3913 YPK_3914 IPR009057 Homeodomain-like YPK_3914 IPR018060 DNA binding HTH domain, AraC-type YPK_3914 IPR020449 Transcription regulator HTH, AraC- type YPK_3915 IPR012671 Type III secretion system, secretion protein E YPK_3916 IPR012843 Type III secretion system YscD/HrpQ YPK_3916 IPR032034 YPK_3916 YPK_3917 IPR003522 Type III secretion system outer membrane pore YscC/HrcC YPK_3917 IPR004845 Type II secretion system GspD, conserved site YPK_3917 IPR004846 Type II/III secretion system YPK_3917 IPR005644 NolW-like YPK_3917 IPR038591 YPK_3917 YPK_3918 IPR001789 Signal transduction response regulator, receiver domain YPK_3918 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_3918 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_3918 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_3918 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain YPK_3918 IPR011006 CheY-like superfamily YPK_3918 IPR036097 YPK_3918 YPK_3918 IPR036641 YPK_3918 YPK_3918 IPR036890 YPK_3918 YPK_3919 IPR000792 Transcription regulator LuxR, C-terminal YPK_3919 IPR001789 Signal transduction response regulator, receiver domain YPK_3919 IPR011006 CheY-like superfamily YPK_3919 IPR016032 Signal transduction response regulator, C-terminal effector YPK_3920 IPR001991 Sodium:dicarboxylate symporter YPK_3920 IPR018107 Sodium:dicarboxylate symporter, conserved site YPK_3920 IPR034703 YPK_3920 YPK_3920 IPR036458 YPK_3920 YPK_3921 IPR000873 AMP-dependent synthetase/ligase YPK_3921 IPR011904 Acetate-CoA ligase YPK_3921 IPR020845 AMP-binding, conserved site YPK_3921 IPR025110 AMP-binding enzyme C-terminal domain YPK_3921 IPR032387 YPK_3921 YPK_3922 IPR007436 Protein of unknown function DUF485 YPK_3923 IPR001734 Sodium/solute symporter YPK_3923 IPR014083 Cation/acetate symporter ActP YPK_3923 IPR018212 Sodium/solute symporter, conserved site YPK_3923 IPR038377 YPK_3923 YPK_3924 IPR025890 Abhydrolase, bacterial YPK_3924 IPR029058 Alpha/Beta hydrolase fold YPK_3925 IPR001584 Integrase, catalytic core YPK_3925 IPR012337 Ribonuclease H-like domain YPK_3925 IPR025948 HTH-like domain YPK_3925 IPR036397 YPK_3925 YPK_3926 IPR002514 Transposase IS3/IS911family YPK_3926 IPR009057 Homeodomain-like YPK_3929 IPR001226 Flavodoxin, conserved site YPK_3929 IPR026816 Flavodoxin domain YPK_3929 IPR029039 Flavoprotein-like YPK_3930 IPR003445 Cation transporter YPK_3930 IPR004772 Potassium uptake protein TrkH family YPK_3931 IPR001498 Impact, N-terminal YPK_3931 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPK_3931 IPR015796 Impact family, bacterial/archaeal YPK_3931 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3931 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPK_3931 IPR035647 YPK_3931 YPK_3931 IPR036956 YPK_3931 YPK_3932 IPR000994 Peptidase M24, structural domain YPK_3932 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPK_3932 IPR022846 Xaa-Pro dipeptidase YPK_3932 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_3932 IPR036005 YPK_3932 YPK_3933 IPR001753 Crotonase superfamily YPK_3933 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal YPK_3933 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding YPK_3933 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site YPK_3933 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_3933 IPR012799 Fatty oxidation complex, alpha subunit FadB YPK_3933 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site YPK_3933 IPR029045 ClpP/crotonase-like domain YPK_3933 IPR036291 YPK_3933 YPK_3934 IPR002155 Thiolase YPK_3934 IPR012805 Acetyl-CoA C-acyltransferase FadA YPK_3934 IPR016039 Thiolase-like YPK_3934 IPR020610 Thiolase, active site YPK_3934 IPR020613 Thiolase, conserved site YPK_3934 IPR020615 Thiolase, acyl-enzyme intermediate active site YPK_3934 IPR020616 Thiolase, N-terminal YPK_3934 IPR020617 Thiolase, C-terminal YPK_3935 IPR001221 Phenol hydroxylase reductase YPK_3935 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPK_3935 IPR008333 Oxidoreductase, FAD-binding domain YPK_3935 IPR017938 Riboflavin synthase-like beta-barrel YPK_3935 IPR039261 YPK_3935 YPK_3936 IPR002830 UbiD decarboxylyase family YPK_3936 IPR023677 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPK_3937 IPR005824 KOW YPK_3937 IPR006645 NusG, N-terminal YPK_3937 IPR010215 Transcription antitermination protein RfaH YPK_3937 IPR036735 YPK_3937 YPK_3938 IPR001731 Porphobilinogen synthase YPK_3938 IPR013785 Aldolase-type TIM barrel YPK_3938 IPR030656 YPK_3938 YPK_3939 IPR001130 TatD family YPK_3939 IPR018228 Deoxyribonuclease, TatD-related, conserved site YPK_3939 IPR024918 Tat-linked quality control protein TatD YPK_3939 IPR032466 YPK_3939 YPK_3940 IPR002033 Sec-independent periplasmic protein translocase TatC YPK_3940 IPR019820 Sec-independent periplasmic protein translocase, conserved site YPK_3941 IPR018448 Twin-arginine translocation protein TatB YPK_3942 IPR003369 Sec-independent protein translocase protein TatA/B/E YPK_3942 IPR006312 Sec-independent protein translocase protein TatA/E YPK_3943 IPR004147 UbiB domain YPK_3943 IPR010232 Probable protein kinase UbiB YPK_3943 IPR011009 Protein kinase-like domain YPK_3944 IPR003033 SCP2 sterol-binding domain YPK_3944 IPR036527 YPK_3944 YPK_3945 IPR004033 UbiE/COQ5 methyltransferase YPK_3945 IPR023576 UbiE/COQ5 methyltransferase, conserved site YPK_3945 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3946 IPR003798 DNA recombination RmuC YPK_3947 IPR032816 YPK_3947 YPK_3948 IPR003706 Carbon starvation protein CstA YPK_3948 IPR025299 CstA C-terminal domain YPK_3949 IPR026893 Tyrosine/serine-protein phosphatase IphP-type YPK_3949 IPR029021 Protein-tyrosine phosphatase-like YPK_3950 IPR000845 Nucleoside phosphorylase domain YPK_3950 IPR010058 Uridine phosphorylase YPK_3950 IPR018016 Nucleoside phosphorylase, conserved site YPK_3950 IPR035994 YPK_3950 YPK_3951 IPR002925 Dienelactone hydrolase YPK_3951 IPR029058 Alpha/Beta hydrolase fold YPK_3952 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal YPK_3952 IPR006276 Cobalamin-independent methionine synthase YPK_3952 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal YPK_3952 IPR038071 YPK_3952 YPK_3953 IPR000847 Transcription regulator HTH, LysR YPK_3953 IPR005119 LysR, substrate-binding YPK_3953 IPR036388 YPK_3953 YPK_3953 IPR036390 YPK_3953 YPK_3954 IPR000620 Drug/metabolite transporter YPK_3954 IPR004779 Carboxylate/Amino Acid/Amine Transporter YPK_3955 IPR001387 Cro/C1-type helix-turn-helix domain YPK_3955 IPR010359 Protein of unknown function DUF955 YPK_3955 IPR010982 Lambda repressor-like, DNA-binding domain YPK_3957 IPR004776 Auxin efflux carrier YPK_3958 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPK_3958 IPR030395 YPK_3958 YPK_3959 IPR003439 ABC transporter-like YPK_3959 IPR003593 AAA+ ATPase domain YPK_3959 IPR008995 Molybdate/tungstate binding, C-terminal YPK_3959 IPR013611 Transport-associated OB, type 2 YPK_3959 IPR017871 ABC transporter, conserved site YPK_3959 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3960 IPR000515 MetI-like domain YPK_3960 IPR035906 YPK_3960 YPK_3961 IPR000515 MetI-like domain YPK_3961 IPR035906 YPK_3961 YPK_3962 IPR006059 Bacterial extracellular solute-binding, family 1 YPK_3962 IPR006061 Bacterial extracellular solute-binding family 1, conserved site YPK_3963 IPR007540 Fimbrial major subunit, CS1-type YPK_3964 IPR032636 YPK_3964 YPK_3965 IPR008962 PapD-like YPK_3965 IPR013783 Immunoglobulin-like fold YPK_3966 IPR013783 Immunoglobulin-like fold YPK_3970 IPR003439 ABC transporter-like YPK_3970 IPR003593 AAA+ ATPase domain YPK_3970 IPR017871 ABC transporter, conserved site YPK_3970 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3970 IPR030660 YPK_3970 YPK_3971 IPR003439 ABC transporter-like YPK_3971 IPR003593 AAA+ ATPase domain YPK_3971 IPR017871 ABC transporter, conserved site YPK_3971 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3971 IPR032823 YPK_3971 YPK_3972 IPR001851 ABC transporter, permease YPK_3972 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YPK_3973 IPR001851 ABC transporter, permease YPK_3974 IPR000709 Leu/Ile/Val-binding protein YPK_3974 IPR028081 Leucine-binding protein domain YPK_3974 IPR028082 Periplasmic binding protein-like I YPK_3975 IPR000182 GNAT domain YPK_3975 IPR016181 Acyl-CoA N-acyltransferase YPK_3975 IPR032900 YPK_3975 YPK_3976 IPR000943 RNA polymerase sigma-70 YPK_3976 IPR007627 RNA polymerase sigma-70 region 2 YPK_3976 IPR007630 RNA polymerase sigma-70 region 4 YPK_3976 IPR009042 RNA polymerase sigma-70 region 1.2 YPK_3976 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria YPK_3976 IPR013324 RNA polymerase sigma factor, region 3/4 YPK_3976 IPR013325 RNA polymerase sigma factor, region 2 YPK_3976 IPR014284 RNA polymerase sigma-70 like domain YPK_3976 IPR036388 YPK_3976 YPK_3977 IPR003838 Permease FtsX-like YPK_3977 IPR004513 ABC transporter, cell division protein FtsX YPK_3978 IPR003439 ABC transporter-like YPK_3978 IPR003593 AAA+ ATPase domain YPK_3978 IPR005286 Cell division protein FtsE, ATP-binding YPK_3978 IPR017871 ABC transporter, conserved site YPK_3978 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3979 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YPK_3979 IPR003593 AAA+ ATPase domain YPK_3979 IPR004390 Signal-recognition particle receptor FtsY YPK_3979 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle YPK_3979 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3979 IPR036225 YPK_3979 YPK_3980 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YPK_3980 IPR004398 RNA methyltransferase, RsmD YPK_3980 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_3981 IPR009525 Protein of unknown function DUF1145 YPK_3982 IPR019635 Protein of unknown function DUF2500 YPK_3983 IPR014949 Protein of unknown function DUF1820 YPK_3984 IPR012506 YhhN-like YPK_3985 IPR001757 Cation-transporting P-type ATPase YPK_3985 IPR006121 Heavy metal-associated domain, HMA YPK_3985 IPR008250 P-type ATPase, A domain YPK_3985 IPR017969 Heavy-metal-associated, conserved site YPK_3985 IPR018303 P-type ATPase, phosphorylation site YPK_3985 IPR023214 HAD-like domain YPK_3985 IPR023298 P-type ATPase, transmembrane domain YPK_3985 IPR023299 P-type ATPase, cytoplasmic domain N YPK_3985 IPR027256 Cation-transporting P-type ATPase, subfamily IB YPK_3985 IPR036163 YPK_3985 YPK_3985 IPR036412 YPK_3985 YPK_3986 IPR001455 TusA-like domain YPK_3986 IPR022931 Sulphurtransferase TusA YPK_3986 IPR036868 YPK_3986 YPK_3987 IPR003744 Protein of unknown function DUF165 YPK_3988 IPR014894 Protein DcrB YPK_3988 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPK_3989 IPR004017 Cysteine-rich domain YPK_3989 IPR009051 Alpha-helical ferredoxin YPK_3989 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit YPK_3989 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3989 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3990 IPR003953 FAD binding domain YPK_3990 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit YPK_3990 IPR036188 YPK_3990 YPK_3991 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase YPK_3991 IPR006076 FAD dependent oxidoreductase YPK_3991 IPR007419 BFD-like [2Fe-2S]-binding domain YPK_3991 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit YPK_3991 IPR036188 YPK_3991 YPK_3992 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YPK_3992 IPR030395 YPK_3992 YPK_3993 IPR004954 Peptidase M60, viral enhancin protein YPK_3994 IPR000150 Cof protein YPK_3994 IPR006379 HAD-superfamily hydrolase, subfamily IIB YPK_3994 IPR023214 HAD-like domain YPK_3994 IPR036412 YPK_3994 YPK_3995 IPR022742 Putative lysophospholipase YPK_3995 IPR029058 Alpha/Beta hydrolase fold YPK_3996 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPK_3997 IPR001123 Lysine-type exporter protein (LYSE/YGGA) YPK_3997 IPR004778 Homoserine/Threonine efflux protein YPK_3998 IPR001650 Helicase, C-terminal YPK_3998 IPR002121 HRDC domain YPK_3998 IPR004589 DNA helicase, ATP-dependent, RecQ type YPK_3998 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial YPK_3998 IPR010997 HRDC-like YPK_3998 IPR011545 DEAD/DEAH box helicase domain YPK_3998 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_3998 IPR018982 RQC domain YPK_3998 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3998 IPR032284 YPK_3998 YPK_3998 IPR036388 YPK_3998 YPK_3999 IPR003187 Phospholipase A1 YPK_3999 IPR036541 YPK_3999 YPK_4000 IPR003736 Phenylacetic acid degradation-related domain YPK_4000 IPR006683 Thioesterase superfamily YPK_4000 IPR029069 HotDog domain YPK_4001 IPR000620 Drug/metabolite transporter YPK_4001 IPR004626 RarD protein YPK_4002 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YPK_4002 IPR004488 Magnesium/cobalt transport protein CorA YPK_4004 IPR009215 TIM-barrel domain, IGPS-like YPK_4004 IPR013785 Aldolase-type TIM barrel YPK_4004 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_4005 IPR008322 Uncharacterised protein family UPF0261 YPK_4006 IPR001647 DNA-binding HTH domain, TetR-type YPK_4006 IPR009057 Homeodomain-like YPK_4007 IPR005753 DNA helicase, ATP-dependent, UvrD type YPK_4007 IPR013986 DExx box DNA helicase domain YPK_4007 IPR014017 DNA helicase, UvrD-like, C-terminal YPK_4007 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4007 IPR034739 YPK_4007 YPK_4008 IPR006439 HAD hydrolase, subfamily IA YPK_4008 IPR023214 HAD-like domain YPK_4008 IPR036412 YPK_4008 YPK_4009 IPR002104 Integrase, catalytic YPK_4009 IPR004107 Integrase, SAM-like, N-terminal YPK_4009 IPR010998 Integrase, Lambda-type, N-terminal YPK_4009 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_4009 IPR011931 Tyrosine recombinase XerC YPK_4009 IPR013762 Integrase-like, catalytic core YPK_4009 IPR023009 Tyrosine recombinase XerC/XerD YPK_4010 IPR007435 Protein of unknown function DUF484 YPK_4010 IPR029016 GAF domain-like YPK_4011 IPR001653 Diaminopimelate epimerase, DapF YPK_4011 IPR018510 Diaminopimelate epimerase, active site YPK_4012 IPR032831 YPK_4012 YPK_4013 IPR002908 Frataxin/CyaY YPK_4013 IPR020895 Frataxin conserved site YPK_4013 IPR036524 YPK_4013 YPK_4015 IPR000274 Adenylate cyclase, class-I YPK_4015 IPR024685 Adenylate cyclase class-I, N-terminal domain YPK_4015 IPR024686 Adenylate cyclase class-I, conserved site YPK_4016 IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YPK_4016 IPR022417 Porphobilinogen deaminase, N-terminal YPK_4016 IPR022418 Porphobilinogen deaminase, C-terminal YPK_4016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site YPK_4016 IPR036803 YPK_4016 YPK_4017 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YPK_4017 IPR036108 YPK_4017 YPK_4018 IPR007470 HemX YPK_4019 IPR005254 Heme biosynthesis-associated TPR protein YPK_4019 IPR010817 HemY, N-terminal YPK_4019 IPR011990 Tetratricopeptide-like helical domain YPK_4021 IPR002293 Amino acid/polyamine transporter I YPK_4021 IPR004840 Amino acid permease, conserved site YPK_4021 IPR004841 Amino acid permease/ SLC12A domain YPK_4022 IPR004629 Glycosyl transferase WecB/TagA/CpsF YPK_4022 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase YPK_4023 IPR010691 Uncharacterised protein family WzyE YPK_4024 IPR009993 4-alpha-L-fucosyltransferase YPK_4025 IPR002797 Polysaccharide biosynthesis protein YPK_4025 IPR032896 YPK_4025 YPK_4026 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_4026 IPR012749 TDP-4-keto-6-deoxy-D-glucose transaminase YPK_4026 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_4026 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_4026 IPR015424 Pyridoxal phosphate-dependent transferase YPK_4026 IPR032894 YPK_4026 YPK_4027 IPR000182 GNAT domain YPK_4027 IPR012752 TDP-D-fucosamine acetyltransferase WecD YPK_4027 IPR016181 Acyl-CoA N-acyltransferase YPK_4028 IPR005835 Nucleotidyl transferase YPK_4028 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form YPK_4028 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4029 IPR005888 dTDP-glucose 4,6-dehydratase YPK_4029 IPR016040 NAD(P)-binding domain YPK_4029 IPR036291 YPK_4029 YPK_4030 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal YPK_4030 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_4030 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation YPK_4030 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal YPK_4030 IPR017476 UDP-glucose/GDP-mannose dehydrogenase YPK_4030 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase YPK_4030 IPR032891 YPK_4030 YPK_4030 IPR036220 YPK_4030 YPK_4030 IPR036291 YPK_4030 YPK_4031 IPR003331 UDP-N-acetylglucosamine 2-epimerase YPK_4031 IPR029767 UDP-N-acetylglucosamine 2-epimerase, WecB-type YPK_4031 IPR032892 YPK_4031 YPK_4032 IPR003856 Lipopolysaccharide biosynthesis YPK_4032 IPR032895 YPK_4032 YPK_4033 IPR000715 Glycosyl transferase, family 4 YPK_4033 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YPK_4034 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPK_4034 IPR003593 AAA+ ATPase domain YPK_4034 IPR004665 Transcription termination factor Rho YPK_4034 IPR011112 Rho termination factor, N-terminal YPK_4034 IPR011113 Rho termination factor, RNA-binding YPK_4034 IPR011129 Cold shock protein YPK_4034 IPR012340 Nucleic acid-binding, OB-fold YPK_4034 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4034 IPR036269 YPK_4034 YPK_4035 IPR005746 Thioredoxin YPK_4035 IPR013766 Thioredoxin domain YPK_4035 IPR017937 Thioredoxin, conserved site YPK_4035 IPR036249 YPK_4035 YPK_4036 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site YPK_4036 IPR001650 Helicase, C-terminal YPK_4036 IPR011545 DEAD/DEAH box helicase domain YPK_4036 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_4036 IPR023554 RNA helicase, ATP-dependent, RhlB-type YPK_4036 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4037 IPR003695 Ppx/GppA phosphatase YPK_4037 IPR022371 Exopolyphosphatase YPK_4037 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YPK_4037 IPR030673 YPK_4037 YPK_4038 IPR005752 DNA helicase, ATP-dependent, RepA type YPK_4038 IPR013986 DExx box DNA helicase domain YPK_4038 IPR014017 DNA helicase, UvrD-like, C-terminal YPK_4038 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4038 IPR034739 YPK_4038 YPK_4041 IPR007788 Glutamine cyclotransferase YPK_4041 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like YPK_4041 IPR015943 WD40/YVTN repeat-like-containing domain YPK_4042 IPR008966 Adhesion domain YPK_4042 IPR036937 YPK_4042 YPK_4042 IPR039458 YPK_4042 YPK_4043 IPR001829 Pili assembly chaperone, bacterial YPK_4043 IPR008962 PapD-like YPK_4043 IPR013783 Immunoglobulin-like fold YPK_4043 IPR016147 PapD, N-terminal, bacterial YPK_4043 IPR016148 Pili assembly chaperone, C-terminal domain YPK_4043 IPR036316 YPK_4043 YPK_4044 IPR000015 Outer membrane usher protein YPK_4044 IPR018030 Fimbrial membrane usher, conserved site YPK_4044 IPR025885 PapC, N-terminal domain YPK_4044 IPR025949 PapC-like, C-terminal domain YPK_4044 IPR037224 YPK_4044 YPK_4045 IPR000259 Fimbrial-type adhesion domain YPK_4045 IPR008966 Adhesion domain YPK_4045 IPR011228 Uncharacterised conserved protein UCP029766 YPK_4045 IPR036937 YPK_4045 YPK_4046 IPR001829 Pili assembly chaperone, bacterial YPK_4046 IPR008962 PapD-like YPK_4046 IPR013783 Immunoglobulin-like fold YPK_4046 IPR016147 PapD, N-terminal, bacterial YPK_4046 IPR016148 Pili assembly chaperone, C-terminal domain YPK_4046 IPR018046 Pili assembly chaperone, conserved site YPK_4046 IPR036316 YPK_4046 YPK_4047 IPR000290 Colicin immunity protein/pyocin immunity protein YPK_4047 IPR035900 YPK_4047 YPK_4048 IPR003060 Pyocin S killer protein YPK_4048 IPR003615 HNH nuclease YPK_4048 IPR037146 YPK_4048 YPK_4050 IPR016128 Pyosin/cloacin translocation domain YPK_4050 IPR036302 YPK_4050 YPK_4051 IPR000506 Acetohydroxy acid isomeroreductase C-terminal YPK_4051 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_4051 IPR013023 Acetohydroxy acid isomeroreductase YPK_4051 IPR013116 Acetohydroxy acid isomeroreductase, catalytic YPK_4051 IPR013328 Dehydrogenase, multihelical YPK_4051 IPR036291 YPK_4051 YPK_4052 IPR000847 Transcription regulator HTH, LysR YPK_4052 IPR005119 LysR, substrate-binding YPK_4052 IPR036388 YPK_4052 YPK_4052 IPR036390 YPK_4052 YPK_4054 IPR017483 Conserved hypothetical protein CHP03034 YPK_4055 IPR010351 Protein of unknown function DUF943 YPK_4056 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site YPK_4056 IPR001721 ACT-like domain YPK_4056 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_4056 IPR005787 Threonine dehydratase, biosynthetic YPK_4056 IPR036052 YPK_4056 YPK_4056 IPR038110 YPK_4056 YPK_4057 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase YPK_4057 IPR004404 Dihydroxy-acid dehydratase YPK_4057 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site YPK_4057 IPR037237 YPK_4057 YPK_4059 IPR001544 Aminotransferase, class IV YPK_4059 IPR005785 Branched-chain amino acid aminotransferase I YPK_4059 IPR018300 Aminotransferase, class IV, conserved site YPK_4059 IPR036038 YPK_4059 YPK_4061 IPR000399 TPP-binding enzyme, conserved site YPK_4061 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding YPK_4061 IPR012000 Thiamine pyrophosphate enzyme, central domain YPK_4061 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YPK_4061 IPR012846 Acetolactate synthase, large subunit, biosynthetic YPK_4061 IPR029035 DHS-like NAD/FAD-binding domain YPK_4061 IPR029061 Thiamin diphosphate-binding fold YPK_4062 IPR000523 Magnesium chelatase, ChlI subunit YPK_4062 IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase YPK_4062 IPR003593 AAA+ ATPase domain YPK_4062 IPR004482 Mg chelatase-related protein YPK_4062 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_4062 IPR025158 Mg chelatase-related protein, C-terminal domain YPK_4062 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4063 IPR007335 Protein of unknown function DUF413 YPK_4064 IPR000847 Transcription regulator HTH, LysR YPK_4064 IPR005119 LysR, substrate-binding YPK_4064 IPR020890 Transcription regulator HTH, HdfR YPK_4064 IPR036388 YPK_4064 YPK_4064 IPR036390 YPK_4064 YPK_4065 IPR001851 ABC transporter, permease YPK_4066 IPR001851 ABC transporter, permease YPK_4067 IPR003439 ABC transporter-like YPK_4067 IPR003593 AAA+ ATPase domain YPK_4067 IPR017871 ABC transporter, conserved site YPK_4067 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4068 IPR025997 Periplasmic binding protein domain YPK_4068 IPR028082 Periplasmic binding protein-like I YPK_4072 IPR001920 Asp/Glu racemase YPK_4072 IPR004391 Glutamate racemase YPK_4072 IPR015942 Asp/Glu/hydantoin racemase YPK_4072 IPR018187 Asp/Glu racemase, active site YPK_4072 IPR033134 YPK_4072 YPK_4073 IPR000531 TonB-dependent receptor, beta-barrel YPK_4073 IPR010101 TonB-dependent vitamin B12 transporter BtuB YPK_4073 IPR010917 TonB-dependent receptor, conserved site YPK_4073 IPR012910 TonB-dependent receptor, plug YPK_4073 IPR036942 YPK_4073 YPK_4073 IPR037066 YPK_4073 YPK_4074 IPR010280 (Uracil-5)-methyltransferase family YPK_4074 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA YPK_4074 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_4074 IPR030390 YPK_4074 YPK_4074 IPR030391 YPK_4074 YPK_4075 IPR009867 Protein of unknown function DUF1422 YPK_4076 IPR001647 DNA-binding HTH domain, TetR-type YPK_4076 IPR009057 Homeodomain-like YPK_4076 IPR023764 Transcriptional repressor HTH, FabR YPK_4078 IPR001100 YPK_4078 YPK_4078 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_4078 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPK_4078 IPR022962 Soluble pyridine nucleotide transhydrogenase YPK_4078 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_4078 IPR036188 YPK_4078 YPK_4079 IPR000847 Transcription regulator HTH, LysR YPK_4079 IPR005119 LysR, substrate-binding YPK_4079 IPR036388 YPK_4079 YPK_4079 IPR036390 YPK_4079 YPK_4080 IPR002109 Glutaredoxin YPK_4080 IPR011767 Glutaredoxin active site YPK_4080 IPR011906 Glutaredoxin domain YPK_4080 IPR013740 Redoxin YPK_4080 IPR014025 Glutaredoxin subgroup YPK_4080 IPR036249 YPK_4080 YPK_4081 IPR001100 YPK_4081 YPK_4081 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_4081 IPR016156 FAD/NAD-linked reductase, dimerisation domain YPK_4081 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YPK_4081 IPR036188 YPK_4081 YPK_4081 IPR036324 YPK_4081 YPK_4082 IPR006260 TonB, C-terminal YPK_4082 IPR037682 YPK_4082 YPK_4083 IPR003997 RTX secretion protein D, Gram-negative bacteria YPK_4083 IPR006144 Secretion protein HlyD, conserved site YPK_4083 IPR010129 Type I secretion membrane fusion protein, HlyD YPK_4083 IPR039562 YPK_4083 YPK_4084 IPR003439 ABC transporter-like YPK_4084 IPR003593 AAA+ ATPase domain YPK_4084 IPR010128 ATPase, type I secretion system, PrtD YPK_4084 IPR011527 ABC transporter type 1, transmembrane domain YPK_4084 IPR017871 ABC transporter, conserved site YPK_4084 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4084 IPR036640 YPK_4084 YPK_4085 IPR010495 Haem-binding HasA YPK_4085 IPR036912 YPK_4085 YPK_4086 IPR000531 TonB-dependent receptor, beta-barrel YPK_4086 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor YPK_4086 IPR011276 TonB-dependent haem/haemoglobin receptor YPK_4086 IPR012910 TonB-dependent receptor, plug YPK_4086 IPR036942 YPK_4086 YPK_4086 IPR037066 YPK_4086 YPK_4087 IPR000362 Fumarate lyase family YPK_4087 IPR008948 L-Aspartase-like YPK_4087 IPR009049 Argininosuccinate lyase YPK_4087 IPR020557 Fumarate lyase, conserved site YPK_4087 IPR022761 Fumarate lyase, N-terminal YPK_4087 IPR024083 Fumarase/histidase, N-terminal YPK_4087 IPR029419 Argininosuccinate lyase, C-terminal YPK_4088 IPR001048 Aspartate/glutamate/uridylate kinase YPK_4088 IPR004662 Acetylglutamate kinase YPK_4088 IPR036393 YPK_4088 YPK_4088 IPR037528 YPK_4088 YPK_4089 IPR000534 Semialdehyde dehydrogenase, NAD-binding YPK_4089 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 YPK_4089 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YPK_4089 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site YPK_4089 IPR036291 YPK_4089 YPK_4090 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site YPK_4090 IPR002933 Peptidase M20 YPK_4090 IPR010169 Acetylornithine deacetylase (ArgE) YPK_4090 IPR011650 Peptidase M20, dimerisation domain YPK_4090 IPR036264 YPK_4090 YPK_4091 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YPK_4091 IPR018129 Phosphoenolpyruvate carboxylase, active site YPK_4091 IPR021135 Phosphoenolpyruvate carboxylase YPK_4091 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type YPK_4091 IPR033129 YPK_4091 YPK_4093 IPR003171 Methylenetetrahydrofolate reductase YPK_4093 IPR004620 5,10-methylenetetrahydrofolate reductase YPK_4093 IPR029041 FAD-linked oxidoreductase-like YPK_4094 IPR001048 Aspartate/glutamate/uridylate kinase YPK_4094 IPR001341 Aspartate kinase domain YPK_4094 IPR001342 Homoserine dehydrogenase, catalytic YPK_4094 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding YPK_4094 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I YPK_4094 IPR018042 Aspartate kinase, conserved site YPK_4094 IPR019811 Homoserine dehydrogenase, conserved site YPK_4094 IPR036291 YPK_4094 YPK_4094 IPR036393 YPK_4094 YPK_4095 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YPK_4095 IPR011821 O-succinylhomoserine (thiol)-lyase YPK_4095 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_4095 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_4095 IPR015424 Pyridoxal phosphate-dependent transferase YPK_4096 IPR002084 Methionine repressor MetJ YPK_4096 IPR010985 Ribbon-helix-helix YPK_4096 IPR023453 Methionine repressor MetJ domain YPK_4097 IPR008024 YiaAB two helix YPK_4098 IPR002150 Ribosomal protein L31 YPK_4098 IPR027491 Ribosomal protein L31 type A YPK_4098 IPR034704 YPK_4098 YPK_4099 IPR001650 Helicase, C-terminal YPK_4099 IPR005259 Primosomal protein n YPK_4099 IPR011545 DEAD/DEAH box helicase domain YPK_4099 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_4099 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4101 IPR000843 Transcription regulator HTH, LacI YPK_4101 IPR010982 Lambda repressor-like, DNA-binding domain YPK_4101 IPR028082 Periplasmic binding protein-like I YPK_4102 IPR007730 Sporulation-related domain YPK_4102 IPR011930 Cell division protein FtsN YPK_4102 IPR036680 YPK_4102 YPK_4103 IPR001353 Proteasome, subunit alpha/beta YPK_4103 IPR022281 ATP-dependent protease, HslV subunit YPK_4103 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_4104 IPR003593 AAA+ ATPase domain YPK_4104 IPR003959 ATPase, AAA-type, core YPK_4104 IPR004491 Heat shock protein HslU YPK_4104 IPR019489 Clp ATPase, C-terminal YPK_4104 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4105 IPR000537 UbiA prenyltransferase family YPK_4105 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase YPK_4105 IPR026046 UbiA prenyltransferase domain containing protein 1 YPK_4106 IPR005493 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YPK_4106 IPR010203 Regulator of ribonuclease activity A YPK_4106 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria YPK_4106 IPR036704 YPK_4106 YPK_4107 IPR025326 Protein of unknown function DUF4232 YPK_4109 IPR003997 RTX secretion protein D, Gram-negative bacteria YPK_4109 IPR006144 Secretion protein HlyD, conserved site YPK_4109 IPR011053 Single hybrid motif YPK_4110 IPR003439 ABC transporter-like YPK_4110 IPR003593 AAA+ ATPase domain YPK_4110 IPR005074 Peptidase C39, bacteriocin processing YPK_4110 IPR011527 ABC transporter type 1, transmembrane domain YPK_4110 IPR017871 ABC transporter, conserved site YPK_4110 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4110 IPR036640 YPK_4110 YPK_4111 IPR009252 Cell division protein ZapB YPK_4112 IPR000425 Major intrinsic protein YPK_4112 IPR022357 Major intrinsic protein, conserved site YPK_4112 IPR023271 Aquaporin-like YPK_4113 IPR000577 YPK_4113 YPK_4113 IPR005999 Glycerol kinase YPK_4113 IPR018483 Carbohydrate kinase, FGGY, conserved site YPK_4113 IPR018484 Carbohydrate kinase, FGGY, N-terminal YPK_4113 IPR018485 Carbohydrate kinase, FGGY, C-terminal YPK_4114 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase YPK_4115 IPR001433 Oxidoreductase FAD/NAD(P)-binding YPK_4115 IPR008333 Oxidoreductase, FAD-binding domain YPK_4115 IPR017938 Riboflavin synthase-like beta-barrel YPK_4115 IPR039261 YPK_4115 YPK_4116 IPR008523 Lactobacillus phage LBR48, DUF805 YPK_4117 IPR009918 Protein of unknown function DUF1454 YPK_4118 IPR000652 Triosephosphate isomerase YPK_4118 IPR013785 Aldolase-type TIM barrel YPK_4118 IPR020861 Triosephosphate isomerase, active site YPK_4118 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic YPK_4118 IPR035990 YPK_4118 YPK_4119 IPR000847 Transcription regulator HTH, LysR YPK_4119 IPR005119 LysR, substrate-binding YPK_4119 IPR036388 YPK_4119 YPK_4119 IPR036390 YPK_4119 YPK_4120 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related YPK_4120 IPR024078 Putative deacetylase LmbE-like domain YPK_4121 IPR005493 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YPK_4121 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YPK_4121 IPR036704 YPK_4121 YPK_4122 IPR001898 Sodium/sulphate symporter YPK_4122 IPR030676 YPK_4122 YPK_4125 IPR005669 Thiosulphate/Sulfate-binding protein YPK_4125 IPR034408 YPK_4125 YPK_4126 IPR000023 Phosphofructokinase domain YPK_4126 IPR012003 ATP-dependent phosphofructokinase, prokaryotic-type YPK_4126 IPR012828 6-phosphofructokinase YPK_4126 IPR015912 Phosphofructokinase, conserved site YPK_4126 IPR022953 Phosphofructokinase YPK_4126 IPR035966 YPK_4126 YPK_4127 IPR002524 Cation efflux protein YPK_4127 IPR023783 Cation efflux pump FieF YPK_4127 IPR027469 Cation efflux protein transmembrane domain YPK_4127 IPR027470 Cation efflux protein cytoplasmic domain YPK_4127 IPR036837 YPK_4127 YPK_4128 IPR025161 Putative transposase IS4/IS5 family YPK_4129 IPR006842 Transposase (putative), YhgA-like YPK_4129 IPR010106 Conserved hypothetical protein CHP01784 YPK_4131 IPR012899 LTXXQ motif family protein YPK_4132 IPR001789 Signal transduction response regulator, receiver domain YPK_4132 IPR001867 Signal transduction response regulator, C-terminal YPK_4132 IPR011006 CheY-like superfamily YPK_4132 IPR036388 YPK_4132 YPK_4133 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_4133 IPR003660 HAMP linker domain YPK_4133 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_4133 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_4133 IPR032404 YPK_4133 YPK_4133 IPR036097 YPK_4133 YPK_4133 IPR036890 YPK_4133 YPK_4133 IPR038515 YPK_4133 YPK_4134 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site YPK_4134 IPR004026 Ada DNA repair, metal-binding YPK_4134 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain YPK_4134 IPR009057 Homeodomain-like YPK_4134 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YPK_4134 IPR016221 Bifunctional regulatory protein Ada YPK_4134 IPR018060 DNA binding HTH domain, AraC-type YPK_4134 IPR035451 YPK_4134 YPK_4134 IPR036217 YPK_4134 YPK_4134 IPR036388 YPK_4134 YPK_4134 IPR036631 YPK_4134 YPK_4135 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPK_4135 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase YPK_4135 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_4135 IPR029028 Alpha/beta knot methyltransferases YPK_4136 IPR001451 Bacterial transferase hexapeptide repeat YPK_4136 IPR005881 Serine O-acetyltransferase YPK_4136 IPR010493 Serine acetyltransferase, N-terminal YPK_4136 IPR011004 Trimeric LpxA-like YPK_4136 IPR018357 Hexapeptide transferase, conserved site YPK_4137 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YPK_4137 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent YPK_4137 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YPK_4137 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YPK_4137 IPR013328 Dehydrogenase, multihelical YPK_4137 IPR036291 YPK_4137 YPK_4138 IPR003708 Bacterial protein export chaperone SecB YPK_4138 IPR035958 YPK_4138 YPK_4139 IPR002109 Glutaredoxin YPK_4139 IPR011767 Glutaredoxin active site YPK_4139 IPR011900 Glutaredoxin, GrxC YPK_4139 IPR014025 Glutaredoxin subgroup YPK_4139 IPR036249 YPK_4139 YPK_4140 IPR001763 Rhodanese-like domain YPK_4140 IPR036873 YPK_4140 YPK_4141 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YPK_4141 IPR006124 Metalloenzyme YPK_4141 IPR011258 BPG-independent PGAM, N-terminal YPK_4141 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YPK_4141 IPR017850 Alkaline-phosphatase-like, core domain YPK_4141 IPR036646 YPK_4141 YPK_4142 IPR011055 Duplicated hybrid motif YPK_4142 IPR016047 Peptidase M23 YPK_4143 IPR006837 Protein of unknown function DUF610, YibQ YPK_4143 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel YPK_4144 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site YPK_4144 IPR004627 L-threonine 3-dehydrogenase YPK_4144 IPR011032 GroES (chaperonin 10)-like YPK_4144 IPR013149 Alcohol dehydrogenase, C-terminal YPK_4144 IPR013154 Alcohol dehydrogenase GroES-like YPK_4144 IPR020843 Polyketide synthase, enoylreductase YPK_4144 IPR036291 YPK_4144 YPK_4145 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YPK_4145 IPR004839 Aminotransferase, class I/classII YPK_4145 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase YPK_4145 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YPK_4145 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YPK_4145 IPR015424 Pyridoxal phosphate-dependent transferase YPK_4146 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YPK_4146 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase YPK_4146 IPR036291 YPK_4146 YPK_4147 IPR002201 Glycosyl transferase, family 9 YPK_4147 IPR011910 Lipopolysaccharide heptosyltransferase II YPK_4148 IPR002201 Glycosyl transferase, family 9 YPK_4148 IPR011908 Lipopolysaccharide heptosyltransferase I YPK_4149 IPR001296 Glycosyl transferase, family 1 YPK_4149 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal YPK_4149 IPR038107 YPK_4149 YPK_4150 IPR001173 Glycosyltransferase 2-like YPK_4150 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4151 IPR001980 Coenzyme A biosynthesis protein YPK_4151 IPR004821 Cytidyltransferase-like domain YPK_4151 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_4152 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase YPK_4152 IPR010979 Ribosomal protein S13-like, H2TH YPK_4152 IPR012319 DNA glycosylase/AP lyase, catalytic domain YPK_4152 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding YPK_4152 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site YPK_4152 IPR020629 Formamidopyrimidine-DNA glycosylase YPK_4152 IPR035937 YPK_4152 YPK_4153 IPR001705 Ribosomal protein L33 YPK_4153 IPR011332 Zinc-binding ribosomal protein YPK_4153 IPR018264 Ribosomal protein L33, conserved site YPK_4153 IPR038584 YPK_4153 YPK_4154 IPR001383 Ribosomal protein L28 YPK_4154 IPR026569 Ribosomal protein L28/L24 YPK_4154 IPR034704 YPK_4154 YPK_4154 IPR037147 YPK_4154 YPK_4155 IPR001405 RadC protein YPK_4155 IPR010994 RuvA domain 2-like YPK_4155 IPR020891 Uncharacterised protein family UPF0758, conserved site YPK_4155 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YPK_4155 IPR025657 RadC-like JAB domain YPK_4156 IPR003382 Flavoprotein YPK_4156 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC YPK_4156 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal YPK_4156 IPR035929 YPK_4156 YPK_4156 IPR036551 YPK_4156 YPK_4157 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase YPK_4157 IPR029054 dUTPase-like YPK_4157 IPR036157 YPK_4157 YPK_4158 IPR001647 DNA-binding HTH domain, TetR-type YPK_4158 IPR009057 Homeodomain-like YPK_4158 IPR023769 Nucleoid occlusion factor SlmA YPK_4158 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPK_4158 IPR036271 YPK_4158 YPK_4159 IPR000836 Phosphoribosyltransferase domain YPK_4159 IPR004467 Orotate phosphoribosyl transferase domain YPK_4159 IPR023031 Orotate phosphoribosyltransferase YPK_4159 IPR029057 Phosphoribosyltransferase-like YPK_4160 IPR001247 Exoribonuclease, phosphorolytic domain 1 YPK_4160 IPR002381 Ribonuclease phosphorolytic, bacterial-type YPK_4160 IPR015847 Exoribonuclease, phosphorolytic domain 2 YPK_4160 IPR018336 Ribonuclease PH, conserved site YPK_4160 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_4160 IPR027408 PNPase/RNase PH domain YPK_4160 IPR036345 YPK_4160 YPK_4161 IPR005229 Conserved hypothetical protein CHP00255 YPK_4161 IPR013527 YicC-like, N-terminal YPK_4161 IPR013551 Domain of unknown function DUF1732 YPK_4162 IPR002104 Integrase, catalytic YPK_4162 IPR010998 Integrase, Lambda-type, N-terminal YPK_4162 IPR011010 DNA breaking-rejoining enzyme, catalytic core YPK_4162 IPR013762 Integrase-like, catalytic core YPK_4162 IPR025166 Domain of unknown function DUF4102 YPK_4162 IPR038488 YPK_4162 YPK_4164 IPR009061 DNA binding domain, putative YPK_4164 IPR010260 Bacteriophage P4, Orf88 YPK_4167 IPR018880 Bacteriophage P4, Ash protein YPK_4173 IPR007421 ATPase, AAA-4 YPK_4173 IPR038461 YPK_4173 YPK_4173 IPR038475 YPK_4173 YPK_4174 IPR005115 Uncharacterised domain UPF0126 YPK_4175 IPR004150 NAD-dependent DNA ligase, OB-fold YPK_4175 IPR010994 RuvA domain 2-like YPK_4175 IPR012340 Nucleic acid-binding, OB-fold YPK_4175 IPR013839 NAD-dependent DNA ligase, adenylation YPK_4175 IPR013840 NAD-dependent DNA ligase, N-terminal YPK_4175 IPR020923 DNA ligase B YPK_4176 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPK_4176 IPR017665 Guanylate kinase YPK_4176 IPR020590 Guanylate kinase, conserved site YPK_4176 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4177 IPR003716 DNA-directed RNA polymerase, omega subunit YPK_4177 IPR006110 RNA polymerase, subunit omega/K/RPB6 YPK_4177 IPR012293 RNA polymerase subunit, RPB6/omega YPK_4177 IPR036161 YPK_4177 YPK_4178 IPR002912 ACT domain YPK_4178 IPR003607 HD/PDEase domain YPK_4178 IPR004095 TGS YPK_4178 IPR004811 RelA/SpoT family YPK_4178 IPR007685 RelA/SpoT YPK_4178 IPR012675 Beta-grasp domain YPK_4178 IPR012676 TGS-like YPK_4179 IPR001537 tRNA/rRNA methyltransferase, SpoU type YPK_4179 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal YPK_4179 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_4179 IPR029028 Alpha/beta knot methyltransferases YPK_4179 IPR033671 YPK_4179 YPK_4180 IPR001650 Helicase, C-terminal YPK_4180 IPR004609 ATP-dependent DNA helicase RecG YPK_4180 IPR011545 DEAD/DEAH box helicase domain YPK_4180 IPR012340 Nucleic acid-binding, OB-fold YPK_4180 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YPK_4180 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4180 IPR033454 YPK_4180 YPK_4181 IPR004445 Sodium/glutamate symporter YPK_4182 IPR006042 Xanthine/uracil permease YPK_4182 IPR006043 Xanthine/uracil/vitamin C permease YPK_4182 IPR017588 Xanthine permease YPK_4184 IPR000182 GNAT domain YPK_4184 IPR012660 Thioesterase, putative YPK_4184 IPR016181 Acyl-CoA N-acyltransferase YPK_4184 IPR029069 HotDog domain YPK_4185 IPR003732 D-tyrosyl-tRNA(Tyr) deacylase YPK_4185 IPR023509 D-Tyr tRNAtyr deacylase-like domain YPK_4186 IPR017039 Virulence factor BrkB YPK_4186 IPR023679 Uncharacterised protein family UPF0761, bacterial YPK_4187 IPR006439 HAD hydrolase, subfamily IA YPK_4187 IPR023198 Phosphoglycolate phosphatase, domain 2 YPK_4187 IPR023214 HAD-like domain YPK_4187 IPR036412 YPK_4187 YPK_4188 IPR000640 Translation elongation factor EFG, V domain YPK_4188 IPR000795 Elongation factor, GTP-binding domain YPK_4188 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YPK_4188 IPR005225 Small GTP-binding protein domain YPK_4188 IPR006298 GTP-binding protein TypA YPK_4188 IPR009000 Translation protein, beta-barrel domain YPK_4188 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4188 IPR031157 YPK_4188 YPK_4188 IPR035647 YPK_4188 YPK_4189 IPR001637 Glutamine synthetase class-I, adenylation site YPK_4189 IPR004809 Glutamine synthetase type I YPK_4189 IPR008146 Glutamine synthetase, catalytic domain YPK_4189 IPR008147 Glutamine synthetase, beta-Grasp YPK_4189 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YPK_4189 IPR027302 Glutamine synthetase, N-terminal conserved site YPK_4189 IPR027303 Glutamine synthetase, glycine-rich site YPK_4189 IPR036651 YPK_4189 YPK_4190 IPR000014 PAS domain YPK_4190 IPR003594 Histidine kinase-like ATPase, C-terminal domain YPK_4190 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YPK_4190 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YPK_4190 IPR013767 PAS fold YPK_4190 IPR035965 YPK_4190 YPK_4190 IPR036097 YPK_4190 YPK_4190 IPR036890 YPK_4190 YPK_4191 IPR001789 Signal transduction response regulator, receiver domain YPK_4191 IPR002078 RNA polymerase sigma factor 54 interaction domain YPK_4191 IPR002197 DNA binding HTH domain, Fis-type YPK_4191 IPR003593 AAA+ ATPase domain YPK_4191 IPR009057 Homeodomain-like YPK_4191 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) YPK_4191 IPR011006 CheY-like superfamily YPK_4191 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_4191 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_4191 IPR025944 Sigma-54 interaction domain, conserved site YPK_4191 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4192 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN YPK_4192 IPR006638 Elongator protein 3/MiaB/NifB YPK_4192 IPR007197 Radical SAM YPK_4192 IPR010723 HemN, C-terminal domain YPK_4192 IPR023404 Radical SAM, alpha/beta horseshoe YPK_4193 IPR007336 Der GTPase activator YPK_4194 IPR006073 GTP binding domain YPK_4194 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC YPK_4194 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4195 IPR001098 DNA-directed DNA polymerase, family A, palm domain YPK_4195 IPR002298 DNA polymerase A YPK_4195 IPR002421 5'-3' exonuclease, N-terminal YPK_4195 IPR002562 3'-5' exonuclease domain YPK_4195 IPR008918 Helix-hairpin-helix motif, class 2 YPK_4195 IPR012337 Ribonuclease H-like domain YPK_4195 IPR018320 DNA polymerase 1 YPK_4195 IPR019760 DNA-directed DNA polymerase, family A, conserved site YPK_4195 IPR020045 5'-3' exonuclease, C-terminal domain YPK_4195 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YPK_4195 IPR029060 PIN domain-like YPK_4195 IPR036279 YPK_4195 YPK_4195 IPR036397 YPK_4195 YPK_4196 IPR001853 DSBA-like thioredoxin domain YPK_4196 IPR017937 Thioredoxin, conserved site YPK_4196 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YPK_4196 IPR036249 YPK_4196 YPK_4197 IPR002575 Aminoglycoside phosphotransferase YPK_4197 IPR011009 Protein kinase-like domain YPK_4197 IPR032882 YPK_4197 YPK_4198 IPR009383 Protein of unknown function DUF1040 YPK_4198 IPR038134 YPK_4198 YPK_4199 IPR013482 Molybdenum cofactor guanylyltransferase YPK_4199 IPR025877 MobA-like NTP transferase domain YPK_4199 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4200 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain YPK_4200 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4201 IPR001207 Transposase, mutator type YPK_4206 IPR000524 Transcription regulator HTH, GntR YPK_4206 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_4206 IPR011711 GntR, C-terminal YPK_4206 IPR036388 YPK_4206 YPK_4206 IPR036390 YPK_4206 YPK_4207 IPR004638 Drug resistance transporter EmrB/QacA subfamily YPK_4207 IPR011701 Major facilitator superfamily YPK_4207 IPR036259 YPK_4207 YPK_4209 IPR002139 Ribokinase YPK_4209 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site YPK_4209 IPR011611 Carbohydrate kinase PfkB YPK_4209 IPR011877 Ribokinase, bacterial YPK_4209 IPR029056 Ribokinase-like YPK_4210 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU YPK_4210 IPR023064 D-ribose pyranase YPK_4210 IPR023750 RbsD-like domain YPK_4211 IPR003855 K+ potassium transporter YPK_4211 IPR023051 Potassium uptake protein, low affinity, Kup YPK_4212 IPR003593 AAA+ ATPase domain YPK_4212 IPR011704 ATPase, dynein-related, AAA domain YPK_4212 IPR022547 ATPase, RavA, C-terminal YPK_4212 IPR023671 ATPase RavA YPK_4212 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4213 IPR002035 von Willebrand factor, type A YPK_4213 IPR008912 Uncharacterised protein family CoxE-like YPK_4213 IPR023481 Uncharacterised protein family ViaA YPK_4213 IPR036465 YPK_4213 YPK_4214 IPR004618 Aspartate--ammonia ligase YPK_4215 IPR000485 AsnC-type HTH domain YPK_4215 IPR011008 Dimeric alpha-beta barrel YPK_4215 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPK_4215 IPR019887 Transcription regulator AsnC-type, C-terminal YPK_4215 IPR019888 Transcription regulator AsnC-type YPK_4215 IPR036388 YPK_4215 YPK_4215 IPR036390 YPK_4215 YPK_4216 IPR001094 Flavodoxin YPK_4216 IPR008254 Flavodoxin/nitric oxide synthase YPK_4216 IPR029039 Flavoprotein-like YPK_4217 IPR002218 Glucose-inhibited division protein A-related YPK_4217 IPR004416 Glucose-inhibited division protein A YPK_4217 IPR020595 Glucose-inhibited division protein A-related, conserved site YPK_4217 IPR026904 GidA associated domain 3 YPK_4217 IPR036188 YPK_4217 YPK_4218 IPR003682 rRNA small subunit methyltransferase G YPK_4218 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YPK_4219 IPR005598 ATP synthase protein I YPK_4220 IPR000568 ATPase, F0 complex, subunit A YPK_4220 IPR023011 ATPase, F0 complex, subunit A, active site YPK_4220 IPR035908 YPK_4220 YPK_4221 IPR000454 ATPase, F0 complex, subunit C YPK_4221 IPR002379 V-ATPase proteolipid subunit C-like domain YPK_4221 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast YPK_4221 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site YPK_4221 IPR035921 YPK_4221 YPK_4221 IPR038662 YPK_4221 YPK_4222 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast YPK_4222 IPR005864 ATPase, F0 complex, subunit B, bacterial YPK_4222 IPR028987 F-type ATP synthase subunit B-like, membrane domain YPK_4223 IPR000711 ATPase, OSCP/delta subunit YPK_4223 IPR020781 ATPase, OSCP/delta subunit, conserved site YPK_4223 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain YPK_4224 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPK_4224 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YPK_4224 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YPK_4224 IPR005294 ATPase, F1 complex, alpha subunit YPK_4224 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPK_4224 IPR023366 ATP synthase subunit alpha-like domain YPK_4224 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4224 IPR036121 YPK_4224 YPK_4224 IPR038376 YPK_4224 YPK_4225 IPR000131 ATPase, F1 complex, gamma subunit YPK_4225 IPR023632 ATPase, F1 complex, gamma subunit conserved site YPK_4225 IPR035968 YPK_4225 YPK_4226 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YPK_4226 IPR003593 AAA+ ATPase domain YPK_4226 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YPK_4226 IPR005722 ATPase, F1 complex, beta subunit YPK_4226 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YPK_4226 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal YPK_4226 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4226 IPR036121 YPK_4226 YPK_4227 IPR001469 ATPase, F1 complex, delta/epsilon subunit YPK_4227 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal YPK_4227 IPR020547 ATPase, F1 complex, delta/epsilon subunit, C-terminal domain YPK_4227 IPR036771 YPK_4227 YPK_4227 IPR036794 YPK_4227 YPK_4228 IPR001451 Bacterial transferase hexapeptide repeat YPK_4228 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase YPK_4228 IPR011004 Trimeric LpxA-like YPK_4228 IPR018357 Hexapeptide transferase, conserved site YPK_4228 IPR025877 MobA-like NTP transferase domain YPK_4228 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4229 IPR001347 Sugar isomerase (SIS) YPK_4229 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising YPK_4229 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_4231 IPR005673 ABC transporter, phosphate-binding protein PstS YPK_4231 IPR024370 PBP domain YPK_4232 IPR000515 MetI-like domain YPK_4232 IPR011864 Phosphate ABC transporter, permease protein PstC YPK_4232 IPR035906 YPK_4232 YPK_4233 IPR000515 MetI-like domain YPK_4233 IPR005672 Phosphate transport system permease protein PstA YPK_4233 IPR035906 YPK_4233 YPK_4234 IPR003439 ABC transporter-like YPK_4234 IPR003593 AAA+ ATPase domain YPK_4234 IPR005670 Phosphate transport system permease protein 1 YPK_4234 IPR017871 ABC transporter, conserved site YPK_4234 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4235 IPR026022 PhoU domain YPK_4235 IPR028366 Phosphate transport system protein PhoU YPK_4235 IPR038078 YPK_4235 YPK_4236 IPR007607 Protein of unknown function DUF583 YPK_4237 IPR001638 Extracellular solute-binding protein, family 3 YPK_4237 IPR018313 Extracellular solute-binding protein, family 3, conserved site YPK_4238 IPR000515 MetI-like domain YPK_4238 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_4238 IPR035906 YPK_4238 YPK_4239 IPR000515 MetI-like domain YPK_4239 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YPK_4239 IPR035906 YPK_4239 YPK_4240 IPR006439 HAD hydrolase, subfamily IA YPK_4240 IPR023198 Phosphoglycolate phosphatase, domain 2 YPK_4240 IPR023214 HAD-like domain YPK_4240 IPR036412 YPK_4240 YPK_4241 IPR006043 Xanthine/uracil/vitamin C permease YPK_4241 IPR026033 Purine permease PbuG-like YPK_4244 IPR010758 Trans-2-enoyl-CoA reductase YPK_4244 IPR024906 Enoyl reductase FAD binding domain YPK_4244 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative YPK_4245 IPR004520 tRNA modification GTPase MnmE YPK_4245 IPR005225 Small GTP-binding protein domain YPK_4245 IPR006073 GTP binding domain YPK_4245 IPR018948 GTP-binding protein TrmE, N-terminal YPK_4245 IPR025867 tRNA modification GTPase MnmE C-terminal domain YPK_4245 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YPK_4245 IPR027368 tRNA modification GTPase MnmE domain 2 YPK_4245 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4246 IPR001708 Membrane insertase OXA1/ALB3/YidC YPK_4246 IPR019998 Membrane insertase YidC YPK_4246 IPR028053 Membrane insertase YidC, N-terminal YPK_4246 IPR028055 Membrane insertase YidC/Oxa1, C-terminal YPK_4246 IPR038210 YPK_4246 YPK_4246 IPR038221 YPK_4246 YPK_4247 IPR002696 Putative membrane protein insertion efficiency factor YPK_4248 IPR000100 Ribonuclease P YPK_4248 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_4248 IPR020539 Ribonuclease P, conserved site YPK_4248 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_4249 IPR000271 Ribosomal protein L34 YPK_4249 IPR020939 Ribosomal protein L34, conserved site