YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 Pfam PF00364 Biotin-requiring enzyme 106 175 2.7E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 Pfam PF00364 Biotin-requiring enzyme 4 73 1.3E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 78 528 1.2E-223 T 12-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 SUPERFAMILY SSF51230 1 93 4.06E-23 T 12-10-2018 IPR011053 Single hybrid motif YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 297 527 2.7E-80 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 Gene3D G3DSA:2.40.50.100 103 182 5.7E-21 T 12-10-2018 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 Gene3D G3DSA:2.40.50.100 1 79 2.0E-21 T 12-10-2018 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 Pfam PF02817 e3 binding domain 225 260 1.1E-14 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 SUPERFAMILY SSF47005 219 264 4.45E-13 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 127 156 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 SUPERFAMILY SSF52777 286 527 2.22E-80 T 12-10-2018 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 Gene3D G3DSA:4.10.320.10 225 270 6.7E-22 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 SUPERFAMILY SSF51230 105 195 4.06E-23 T 12-10-2018 IPR011053 Single hybrid motif YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 Gene3D G3DSA:3.30.559.10 280 528 1.6E-100 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YPK_3490 07a56ffe1ec03355d3ece66fff253c34 528 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 YPK_3316 48b5d7635c6d20eb744269232555c1e9 137 Pfam PF01797 Transposase IS200 like 12 129 2.8E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3316 48b5d7635c6d20eb744269232555c1e9 137 SMART SM01321 11 129 2.7E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3316 48b5d7635c6d20eb744269232555c1e9 137 Gene3D G3DSA:3.30.70.1290 3 135 7.8E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3316 48b5d7635c6d20eb744269232555c1e9 137 SUPERFAMILY SSF143422 1 129 7.06E-47 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_0554 ef4e497b385551a2704cf5018066c8d3 469 SUPERFAMILY SSF51556 3 465 4.76E-179 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_0554 ef4e497b385551a2704cf5018066c8d3 469 Gene3D G3DSA:1.10.2020.10 46 137 9.0E-200 T 12-10-2018 YPK_0554 ef4e497b385551a2704cf5018066c8d3 469 Hamap MF_00675 Uronate isomerase [uxaC]. 2 467 48.974 T 12-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 YPK_0554 ef4e497b385551a2704cf5018066c8d3 469 Pfam PF02614 Glucuronate isomerase 1 465 1.2E-226 T 12-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 YPK_0554 ef4e497b385551a2704cf5018066c8d3 469 Gene3D G3DSA:3.20.20.140 7 465 9.0E-200 T 12-10-2018 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 SUPERFAMILY SSF56719 32 483 4.84E-153 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 SMART SM00434 12 462 2.1E-235 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 9 742 0.0 T 12-10-2018 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 Gene3D G3DSA:1.10.268.10 345 484 2.2E-45 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 743 33.855 T 12-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 Gene3D G3DSA:2.120.10.90 501 726 6.9E-10 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 696 2.0E-5 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 634 5.6E-5 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 Gene3D G3DSA:3.90.199.10 31 162 7.0E-59 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 SUPERFAMILY SSF101904 498 741 6.02E-51 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 9.0E-133 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0662 4c196a703a4c15fd4fdaece72a1ac489 757 Gene3D G3DSA:3.30.1360.40 163 344 5.5E-71 T 12-10-2018 YPK_0043 8afcca726927504f448138c0faf525ff 657 SUPERFAMILY SSF46785 456 524 2.29E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0043 8afcca726927504f448138c0faf525ff 657 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site YPK_0043 8afcca726927504f448138c0faf525ff 657 SUPERFAMILY SSF50447 180 300 2.65E-25 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_0043 8afcca726927504f448138c0faf525ff 657 Pfam PF09106 Elongation factor SelB, winged helix 466 521 3.9E-15 T 12-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 YPK_0043 8afcca726927504f448138c0faf525ff 657 SUPERFAMILY SSF46785 590 648 5.94E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0043 8afcca726927504f448138c0faf525ff 657 Gene3D G3DSA:3.40.50.300 1 172 3.1E-45 T 12-10-2018 YPK_0043 8afcca726927504f448138c0faf525ff 657 Pfam PF00009 Elongation factor Tu GTP binding domain 2 166 1.5E-31 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0043 8afcca726927504f448138c0faf525ff 657 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 648 1.8E-206 T 12-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 YPK_0043 8afcca726927504f448138c0faf525ff 657 Pfam PF09107 Elongation factor SelB, winged helix 603 646 9.8E-20 T 12-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 YPK_0043 8afcca726927504f448138c0faf525ff 657 SUPERFAMILY SSF50465 280 389 2.45E-5 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPK_0043 8afcca726927504f448138c0faf525ff 657 PRINTS PR00315 GTP-binding elongation factor signature 54 64 1.8E-7 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0043 8afcca726927504f448138c0faf525ff 657 PRINTS PR00315 GTP-binding elongation factor signature 107 116 1.8E-7 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0043 8afcca726927504f448138c0faf525ff 657 PRINTS PR00315 GTP-binding elongation factor signature 70 81 1.8E-7 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0043 8afcca726927504f448138c0faf525ff 657 PRINTS PR00315 GTP-binding elongation factor signature 2 15 1.8E-7 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0043 8afcca726927504f448138c0faf525ff 657 Gene3D G3DSA:2.40.30.10 176 287 9.7E-25 T 12-10-2018 YPK_0043 8afcca726927504f448138c0faf525ff 657 SUPERFAMILY SSF52540 2 194 1.94E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0043 8afcca726927504f448138c0faf525ff 657 Gene3D G3DSA:1.10.10.10 528 587 1.7E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0043 8afcca726927504f448138c0faf525ff 657 Gene3D G3DSA:1.10.10.10 588 648 2.1E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 SMART SM00382 29 212 3.3E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 Gene3D G3DSA:2.40.50.140 285 339 6.9E-26 T 12-10-2018 YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 Pfam PF00005 ABC transporter 21 162 1.9E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 Pfam PF08402 TOBE domain 278 347 6.4E-5 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 SUPERFAMILY SSF50331 237 355 4.62E-26 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 Gene3D G3DSA:2.40.50.940 223 348 6.9E-26 T 12-10-2018 YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 Gene3D G3DSA:3.40.50.300 3 222 6.7E-63 T 12-10-2018 YPK_3959 dbda8da001dde3cc7832626d1efc57c4 357 SUPERFAMILY SSF52540 4 243 1.57E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3865 91294d462635cbff137e8ca52a967ab6 1269 Pfam PF03797 Autotransporter beta-domain 993 1245 2.0E-33 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_3865 91294d462635cbff137e8ca52a967ab6 1269 SUPERFAMILY SSF103515 952 1269 1.01E-38 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_3865 91294d462635cbff137e8ca52a967ab6 1269 SUPERFAMILY SSF51126 408 935 1.35E-31 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_3865 91294d462635cbff137e8ca52a967ab6 1269 SMART SM00869 990 1254 8.6E-35 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_3865 91294d462635cbff137e8ca52a967ab6 1269 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 822 1269 2.2E-78 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_3865 91294d462635cbff137e8ca52a967ab6 1269 Gene3D G3DSA:2.40.128.130 944 1269 5.7E-62 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_3865 91294d462635cbff137e8ca52a967ab6 1269 Gene3D G3DSA:2.160.20.20 751 937 9.1E-37 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_2792 60a7de6192a73b7b8441cd88d071502b 401 Pfam PF07690 Major Facilitator Superfamily 16 358 1.9E-46 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2792 60a7de6192a73b7b8441cd88d071502b 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 10 390 1.6E-139 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 YPK_2792 60a7de6192a73b7b8441cd88d071502b 401 Gene3D G3DSA:1.20.1720.10 11 390 3.6E-102 T 12-10-2018 YPK_2792 60a7de6192a73b7b8441cd88d071502b 401 SUPERFAMILY SSF103473 5 397 2.22E-70 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3035 fa0f0d1b9fde9bd57d913ee510413f79 64 Pfam PF08971 Glycogen synthesis protein 11 58 4.4E-10 T 12-10-2018 IPR015065 Surface composition regulator YPK_3035 fa0f0d1b9fde9bd57d913ee510413f79 64 Gene3D G3DSA:1.20.58.250 12 64 1.0E-7 T 12-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3035 fa0f0d1b9fde9bd57d913ee510413f79 64 SUPERFAMILY SSF46575 15 60 6.15E-8 T 12-10-2018 YPK_3035 fa0f0d1b9fde9bd57d913ee510413f79 64 Hamap MF_00525 Surface composition regulator [glgS]. 5 64 19.107 T 12-10-2018 IPR015065 Surface composition regulator YPK_3151 48efc81959648d98ca3bb328f093a5db 70 Pfam PF13275 S4 domain 8 68 4.3E-22 T 12-10-2018 YPK_3151 48efc81959648d98ca3bb328f093a5db 70 Gene3D G3DSA:3.10.290.10 1 70 3.1E-25 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_3151 48efc81959648d98ca3bb328f093a5db 70 SUPERFAMILY SSF55174 6 69 7.2E-19 T 12-10-2018 YPK_3606 d396cd85d815ba09f49e0b91eed6ec93 238 Pfam PF00072 Response regulator receiver domain 6 113 6.6E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3606 d396cd85d815ba09f49e0b91eed6ec93 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 7.3E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_3606 d396cd85d815ba09f49e0b91eed6ec93 238 SUPERFAMILY SSF46894 137 234 3.12E-21 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_3606 d396cd85d815ba09f49e0b91eed6ec93 238 Gene3D G3DSA:1.10.10.10 124 236 9.0E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3606 d396cd85d815ba09f49e0b91eed6ec93 238 SMART SM00862 156 232 2.1E-14 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_3606 d396cd85d815ba09f49e0b91eed6ec93 238 SMART SM00448 4 114 4.5E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3606 d396cd85d815ba09f49e0b91eed6ec93 238 SUPERFAMILY SSF52172 2 127 8.4E-36 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3606 d396cd85d815ba09f49e0b91eed6ec93 238 Gene3D G3DSA:3.40.50.2300 1 123 2.0E-32 T 12-10-2018 YPK_2680 bd3f564b9702396b77f2b41d75d9506b 382 Gene3D G3DSA:1.20.1250.20 196 378 6.3E-17 T 12-10-2018 YPK_2680 bd3f564b9702396b77f2b41d75d9506b 382 SUPERFAMILY SSF103473 6 372 6.93E-43 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2680 bd3f564b9702396b77f2b41d75d9506b 382 Gene3D G3DSA:1.20.1250.20 3 187 5.1E-20 T 12-10-2018 YPK_2680 bd3f564b9702396b77f2b41d75d9506b 382 Pfam PF07690 Major Facilitator Superfamily 11 316 5.4E-24 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2680 bd3f564b9702396b77f2b41d75d9506b 382 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 382 35.57 T 12-10-2018 IPR023745 MSF-type transporter, YcaD YPK_2951 49e5f3d725d989c9f1e9aa312ec0dc34 312 Gene3D G3DSA:1.20.1510.10 12 208 4.5E-52 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YPK_2951 49e5f3d725d989c9f1e9aa312ec0dc34 312 SUPERFAMILY SSF161111 10 209 2.75E-63 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YPK_2951 49e5f3d725d989c9f1e9aa312ec0dc34 312 SUPERFAMILY SSF160240 212 287 5.1E-9 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 YPK_2951 49e5f3d725d989c9f1e9aa312ec0dc34 312 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 288 1.2E-96 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YPK_2951 49e5f3d725d989c9f1e9aa312ec0dc34 312 Pfam PF01545 Cation efflux family 16 208 2.0E-54 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YPK_2951 49e5f3d725d989c9f1e9aa312ec0dc34 312 Hamap MF_00552 Zinc transporter ZitB [zitB]. 3 307 65.909 T 12-10-2018 IPR023500 Zinc transporter ZitB GO:0005385|GO:0006829|GO:0016020 YPK_2954 e105e31110324de7f23db9bd07a7766c 269 Pfam PF13174 Tetratricopeptide repeat 224 256 1.8E-7 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_2954 e105e31110324de7f23db9bd07a7766c 269 Gene3D G3DSA:1.25.40.10 149 269 1.6E-32 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2954 e105e31110324de7f23db9bd07a7766c 269 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 149 266 3.7E-44 T 12-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal YPK_2954 e105e31110324de7f23db9bd07a7766c 269 Gene3D G3DSA:1.20.5.110 35 114 3.1E-32 T 12-10-2018 YPK_2954 e105e31110324de7f23db9bd07a7766c 269 Pfam PF16331 TolA binding protein trimerisation 37 110 3.4E-23 T 12-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 YPK_2954 e105e31110324de7f23db9bd07a7766c 269 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 269 20.217 T 12-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 YPK_2954 e105e31110324de7f23db9bd07a7766c 269 SUPERFAMILY SSF48452 158 262 7.59E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2954 e105e31110324de7f23db9bd07a7766c 269 Pfam PF13432 Tetratricopeptide repeat 158 220 3.6E-10 T 12-10-2018 YPK_1533 ac7e44f189c092da4051a5799f9daf12 245 SUPERFAMILY SSF110997 166 239 1.83E-11 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YPK_1533 ac7e44f189c092da4051a5799f9daf12 245 Hamap MF_02022 Cell division protein DedD [dedD]. 14 243 25.5 T 12-10-2018 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 YPK_1533 ac7e44f189c092da4051a5799f9daf12 245 Pfam PF05036 Sporulation related domain 166 238 1.8E-9 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 YPK_1424 1d11ec06d6811a37e6ab5659e0aebc7a 227 SUPERFAMILY SSF52172 1 123 3.56E-36 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1424 1d11ec06d6811a37e6ab5659e0aebc7a 227 SUPERFAMILY SSF46894 126 226 3.4E-25 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1424 1d11ec06d6811a37e6ab5659e0aebc7a 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 9.5E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1424 1d11ec06d6811a37e6ab5659e0aebc7a 227 Gene3D G3DSA:3.40.50.2300 1 119 5.6E-32 T 12-10-2018 YPK_1424 1d11ec06d6811a37e6ab5659e0aebc7a 227 Pfam PF00072 Response regulator receiver domain 3 111 4.8E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1424 1d11ec06d6811a37e6ab5659e0aebc7a 227 SMART SM00448 1 111 1.0E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1424 1d11ec06d6811a37e6ab5659e0aebc7a 227 Gene3D G3DSA:1.10.10.10 120 227 8.3E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1424 1d11ec06d6811a37e6ab5659e0aebc7a 227 SMART SM00862 150 226 8.6E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 99 116 - T 12-10-2018 IPR018046 Pili assembly chaperone, conserved site YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 Gene3D G3DSA:2.60.40.10 24 145 1.1E-43 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 PRINTS PR00969 Pili chaperone signature 72 93 2.5E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 PRINTS PR00969 Pili chaperone signature 100 117 2.5E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 PRINTS PR00969 Pili chaperone signature 126 141 2.5E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 PRINTS PR00969 Pili chaperone signature 23 32 2.5E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 PRINTS PR00969 Pili chaperone signature 166 181 2.5E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 SUPERFAMILY SSF49584 138 238 2.22E-15 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 171 234 2.4E-15 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 Gene3D G3DSA:2.60.40.10 149 245 1.8E-19 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 SUPERFAMILY SSF49354 18 144 7.85E-42 T 12-10-2018 IPR008962 PapD-like superfamily YPK_1476 ab55fcef8718c9acb588f04b9be3a46d 253 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 23 144 6.9E-44 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 SUPERFAMILY SSF46785 3 85 5.45E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 Pfam PF03466 LysR substrate binding domain 93 288 2.0E-20 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 4.5E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 Gene3D G3DSA:3.40.190.10 99 284 5.9E-33 T 12-10-2018 YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 SUPERFAMILY SSF53850 93 292 5.07E-24 T 12-10-2018 YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 Gene3D G3DSA:3.40.190.10 159 259 5.9E-33 T 12-10-2018 YPK_1654 fdc3fb1ee8354858b15e9513954a24cd 308 Gene3D G3DSA:1.10.10.10 5 96 9.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0878 795e08217e72668a060fa4088fdc87e4 232 SUPERFAMILY SSF52172 2 124 3.27E-36 T 12-10-2018 IPR011006 CheY-like superfamily YPK_0878 795e08217e72668a060fa4088fdc87e4 232 SMART SM00862 152 228 1.4E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_0878 795e08217e72668a060fa4088fdc87e4 232 Pfam PF00072 Response regulator receiver domain 5 114 9.6E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0878 795e08217e72668a060fa4088fdc87e4 232 SUPERFAMILY SSF46894 130 228 1.65E-24 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_0878 795e08217e72668a060fa4088fdc87e4 232 Gene3D G3DSA:3.40.50.2300 1 131 4.1E-32 T 12-10-2018 YPK_0878 795e08217e72668a060fa4088fdc87e4 232 SMART SM00448 3 114 2.0E-36 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0878 795e08217e72668a060fa4088fdc87e4 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 228 1.1E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_0878 795e08217e72668a060fa4088fdc87e4 232 Gene3D G3DSA:1.10.10.10 132 230 5.2E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3399 9e868b740e319ee3eff48919de0e8489 504 Pfam PF00005 ABC transporter 29 180 7.0E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3399 9e868b740e319ee3eff48919de0e8489 504 SMART SM00382 38 228 2.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3399 9e868b740e319ee3eff48919de0e8489 504 SMART SM00382 288 483 0.031 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3399 9e868b740e319ee3eff48919de0e8489 504 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3399 9e868b740e319ee3eff48919de0e8489 504 Pfam PF00005 ABC transporter 280 434 3.2E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3399 9e868b740e319ee3eff48919de0e8489 504 SUPERFAMILY SSF52540 12 239 1.43E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3399 9e868b740e319ee3eff48919de0e8489 504 SUPERFAMILY SSF52540 268 493 1.78E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3399 9e868b740e319ee3eff48919de0e8489 504 Gene3D G3DSA:3.40.50.300 8 247 1.1E-56 T 12-10-2018 YPK_3399 9e868b740e319ee3eff48919de0e8489 504 Gene3D G3DSA:3.40.50.300 251 503 1.2E-45 T 12-10-2018 YPK_3829 0055ca3421025a90026701227cdc91f7 715 SMART SM00926 1 54 2.4E-17 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_3829 0055ca3421025a90026701227cdc91f7 715 SUPERFAMILY SSF53706 1 561 7.59E-196 T 12-10-2018 YPK_3829 0055ca3421025a90026701227cdc91f7 715 PIRSF PIRSF000144 536 691 7.3 T 12-10-2018 YPK_3829 0055ca3421025a90026701227cdc91f7 715 PIRSF PIRSF000144 55 440 1.2E-60 T 12-10-2018 YPK_3829 0055ca3421025a90026701227cdc91f7 715 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 433 450 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YPK_3829 0055ca3421025a90026701227cdc91f7 715 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 1 53 1.9E-14 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_3829 0055ca3421025a90026701227cdc91f7 715 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 6 684 9.5E-270 T 12-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 YPK_3829 0055ca3421025a90026701227cdc91f7 715 Gene3D G3DSA:2.40.40.20 571 687 2.3E-40 T 12-10-2018 YPK_3829 0055ca3421025a90026701227cdc91f7 715 Pfam PF01568 Molydopterin dinucleotide binding domain 574 681 8.7E-28 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YPK_3829 0055ca3421025a90026701227cdc91f7 715 Gene3D G3DSA:2.20.25.90 1 55 3.0E-18 T 12-10-2018 YPK_3829 0055ca3421025a90026701227cdc91f7 715 Pfam PF00384 Molybdopterin oxidoreductase 61 486 3.1E-93 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_3829 0055ca3421025a90026701227cdc91f7 715 Gene3D G3DSA:3.40.50.740 67 530 1.1E-174 T 12-10-2018 YPK_3829 0055ca3421025a90026701227cdc91f7 715 SUPERFAMILY SSF50692 564 700 3.39E-41 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YPK_3829 0055ca3421025a90026701227cdc91f7 715 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 6 23 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YPK_3829 0055ca3421025a90026701227cdc91f7 715 Gene3D G3DSA:3.40.228.10 142 340 1.1E-174 T 12-10-2018 YPK_3436 aacf8b0209fb2666861e3a669070cfad 302 PIRSF PIRSF002936 1 302 5.8E-155 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YPK_3436 aacf8b0209fb2666861e3a669070cfad 302 SUPERFAMILY SSF52402 6 209 1.01E-74 T 12-10-2018 YPK_3436 aacf8b0209fb2666861e3a669070cfad 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 2.9E-166 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YPK_3436 aacf8b0209fb2666861e3a669070cfad 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 2.1E-64 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 YPK_3436 aacf8b0209fb2666861e3a669070cfad 302 Gene3D G3DSA:3.40.50.620 7 212 1.4E-64 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3436 aacf8b0209fb2666861e3a669070cfad 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 58.492 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YPK_0075 9733ef820721f9242bf87f38bacea376 107 SUPERFAMILY SSF53686 5 103 1.7E-27 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_0075 9733ef820721f9242bf87f38bacea376 107 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 5 104 2.8E-25 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_0075 9733ef820721f9242bf87f38bacea376 107 Gene3D G3DSA:3.40.50.1100 6 31 3.1E-31 T 12-10-2018 YPK_0075 9733ef820721f9242bf87f38bacea376 107 Gene3D G3DSA:3.40.50.1100 32 104 3.1E-31 T 12-10-2018 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 Pfam PF00672 HAMP domain 218 264 1.4E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 SUPERFAMILY SSF47170 25 182 4.71E-50 T 12-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 Gene3D G3DSA:1.10.287.950 216 518 1.6E-98 T 12-10-2018 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 1.4E-89 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 1.4E-89 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.4E-89 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 1.4E-89 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 1.4E-89 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 1.4E-89 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.4E-89 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 SMART SM00283 269 516 4.8E-95 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 1.1E-58 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 SMART SM00304 216 268 1.0E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 SUPERFAMILY SSF58104 236 522 1.57E-76 T 12-10-2018 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 Gene3D G3DSA:1.20.120.30 22 193 9.8E-60 T 12-10-2018 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 SMART SM00319 44 182 4.2E-39 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 Pfam PF02203 Tar ligand binding domain homologue 1 175 2.8E-52 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YPK_1753 3fbaab0e55771a58f8e5c055be7b75c9 557 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 12-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPK_4019 4a0dcff35820ae82e27602251e9f73b4 406 Pfam PF07219 HemY protein N-terminus 26 132 6.1E-32 T 12-10-2018 IPR010817 HemY, N-terminal YPK_4019 4a0dcff35820ae82e27602251e9f73b4 406 Gene3D G3DSA:1.25.40.10 153 404 9.6E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_4019 4a0dcff35820ae82e27602251e9f73b4 406 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 386 1.4E-133 T 12-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 YPK_4019 4a0dcff35820ae82e27602251e9f73b4 406 SUPERFAMILY SSF48452 157 388 6.08E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 203 439 7.7E-74 T 12-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 12 171 2.5E-36 T 12-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 SUPERFAMILY SSF51735 3 265 3.7E-74 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 Gene3D G3DSA:1.10.1040.10 267 460 1.5E-43 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 PRINTS PR00084 Mannitol dehydrogenase signature 232 247 1.2E-15 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 PRINTS PR00084 Mannitol dehydrogenase signature 162 175 1.2E-15 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 PRINTS PR00084 Mannitol dehydrogenase signature 202 215 1.2E-15 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 PRINTS PR00084 Mannitol dehydrogenase signature 12 22 1.2E-15 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 Gene3D G3DSA:3.40.50.720 1 265 2.3E-80 T 12-10-2018 YPK_1922 1edead3af018525f5e4e8ad3759ac8c8 463 SUPERFAMILY SSF48179 268 455 2.07E-46 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_2487 c6dde945b558b9266250d8f3d00dfe62 572 Gene3D G3DSA:3.40.50.300 329 571 6.2E-91 T 12-10-2018 YPK_2487 c6dde945b558b9266250d8f3d00dfe62 572 Pfam PF00005 ABC transporter 350 498 3.2E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2487 c6dde945b558b9266250d8f3d00dfe62 572 Pfam PF00664 ABC transporter transmembrane region 17 287 5.0E-52 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_2487 c6dde945b558b9266250d8f3d00dfe62 572 Gene3D G3DSA:1.20.1560.10 1 315 1.0E-75 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2487 c6dde945b558b9266250d8f3d00dfe62 572 SMART SM00382 358 544 2.3E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2487 c6dde945b558b9266250d8f3d00dfe62 572 SUPERFAMILY SSF52540 322 569 5.21E-91 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2487 c6dde945b558b9266250d8f3d00dfe62 572 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2487 c6dde945b558b9266250d8f3d00dfe62 572 SUPERFAMILY SSF90123 3 321 1.83E-75 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_1745 e9c626d75a9d315210be82c69ed61382 116 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 9 94 3.0E-45 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 YPK_1745 e9c626d75a9d315210be82c69ed61382 116 SUPERFAMILY SSF63592 1 98 4.84E-39 T 12-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily YPK_1745 e9c626d75a9d315210be82c69ed61382 116 Gene3D G3DSA:1.10.4000.10 1 116 3.2E-48 T 12-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily YPK_1745 e9c626d75a9d315210be82c69ed61382 116 Pfam PF05247 Flagellar transcriptional activator (FlhD) 1 100 5.1E-40 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 YPK_1745 e9c626d75a9d315210be82c69ed61382 116 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 1 104 28.706 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 YPK_4050 8a51440a6fe146f72fcf59148d8e17bd 612 Pfam PF06958 S-type Pyocin 322 462 2.1E-38 T 12-10-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 YPK_4050 8a51440a6fe146f72fcf59148d8e17bd 612 SUPERFAMILY SSF69369 238 495 2.62E-56 T 12-10-2018 IPR036302 Pyosin/cloacin translocation domain superfamily GO:0009405 YPK_1830 c5fd870f9f9bda58514cf9cdfd294e7a 252 SUPERFAMILY SSF52540 14 228 3.8E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1830 c5fd870f9f9bda58514cf9cdfd294e7a 252 Pfam PF00005 ABC transporter 17 163 9.6E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1830 c5fd870f9f9bda58514cf9cdfd294e7a 252 SMART SM00382 23 219 4.0E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1830 c5fd870f9f9bda58514cf9cdfd294e7a 252 Gene3D G3DSA:3.40.50.300 2 251 2.7E-54 T 12-10-2018 YPK_1830 c5fd870f9f9bda58514cf9cdfd294e7a 252 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1830 c5fd870f9f9bda58514cf9cdfd294e7a 252 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 2 250 45.254 T 12-10-2018 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 YPK_4061 198b212044590df148d0567c32ec92a7 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YPK_4061 198b212044590df148d0567c32ec92a7 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 164 4.3E-58 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YPK_4061 198b212044590df148d0567c32ec92a7 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 321 3.7E-41 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YPK_4061 198b212044590df148d0567c32ec92a7 548 SUPERFAMILY SSF52467 184 342 4.48E-57 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPK_4061 198b212044590df148d0567c32ec92a7 548 Gene3D G3DSA:3.40.50.970 1 175 9.8E-70 T 12-10-2018 YPK_4061 198b212044590df148d0567c32ec92a7 548 SUPERFAMILY SSF52518 357 546 4.47E-64 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_4061 198b212044590df148d0567c32ec92a7 548 Gene3D G3DSA:3.40.50.1220 187 343 9.8E-119 T 12-10-2018 YPK_4061 198b212044590df148d0567c32ec92a7 548 SUPERFAMILY SSF52518 1 174 2.31E-64 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_4061 198b212044590df148d0567c32ec92a7 548 Gene3D G3DSA:3.40.50.970 344 522 9.8E-119 T 12-10-2018 YPK_4061 198b212044590df148d0567c32ec92a7 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 545 1.5E-213 T 12-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YPK_4061 198b212044590df148d0567c32ec92a7 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 1.7E-48 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YPK_2622 f44389c162cc3e13908046abf71ae7b4 138 SMART SM00881 10 104 7.1E-24 T 12-10-2018 IPR003781 CoA-binding GO:0048037 YPK_2622 f44389c162cc3e13908046abf71ae7b4 138 SUPERFAMILY SSF51735 2 135 7.09E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2622 f44389c162cc3e13908046abf71ae7b4 138 Pfam PF13380 CoA binding domain 14 130 5.1E-37 T 12-10-2018 IPR003781 CoA-binding GO:0048037 YPK_2622 f44389c162cc3e13908046abf71ae7b4 138 Gene3D G3DSA:3.40.50.720 1 138 1.3E-39 T 12-10-2018 YPK_3651 55973c0ae3ff3fd41d20616aeb9276ff 351 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 301 4.7E-45 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_3036 c2e60e7edc70080957ac261b81e70c77 95 Gene3D G3DSA:3.30.70.100 2 95 2.9E-32 T 12-10-2018 YPK_3036 c2e60e7edc70080957ac261b81e70c77 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 1.0E-10 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain YPK_3036 c2e60e7edc70080957ac261b81e70c77 95 SUPERFAMILY SSF54909 1 90 9.08E-25 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_0352 5f800380169d4a4d6c15ab301d5d2cb1 246 Gene3D G3DSA:3.30.2170.10 12 227 8.7E-81 T 12-10-2018 YPK_0352 5f800380169d4a4d6c15ab301d5d2cb1 246 Hamap MF_00801 Endonuclease V [nfi]. 12 229 33.359 T 12-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 YPK_0352 5f800380169d4a4d6c15ab301d5d2cb1 246 Pfam PF04493 Endonuclease V 27 219 1.3E-71 T 12-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 YPK_2672 7e1675f453f4410f3c58987a963cb16a 615 Gene3D G3DSA:2.150.10.10 236 390 4.1E-8 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_2672 7e1675f453f4410f3c58987a963cb16a 615 SUPERFAMILY SSF54523 526 613 2.2E-13 T 12-10-2018 YPK_2672 7e1675f453f4410f3c58987a963cb16a 615 Pfam PF03895 YadA-like membrane anchor domain 561 613 1.8E-7 T 12-10-2018 IPR005594 YadA-like, C-terminal YPK_2672 7e1675f453f4410f3c58987a963cb16a 615 Gene3D G3DSA:3.30.1300.30 514 614 1.4E-13 T 12-10-2018 YPK_2061 93d10a9b317cb79a19674ba557cbd8d2 179 Pfam PF13505 Outer membrane protein beta-barrel domain 11 179 1.2E-23 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel YPK_2061 93d10a9b317cb79a19674ba557cbd8d2 179 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 171 179 - T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2061 93d10a9b317cb79a19674ba557cbd8d2 179 Gene3D G3DSA:2.40.160.20 25 179 2.7E-52 T 12-10-2018 YPK_2061 93d10a9b317cb79a19674ba557cbd8d2 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 140 161 1.1E-31 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2061 93d10a9b317cb79a19674ba557cbd8d2 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 167 178 1.1E-31 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2061 93d10a9b317cb79a19674ba557cbd8d2 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 52 64 1.1E-31 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2061 93d10a9b317cb79a19674ba557cbd8d2 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 93 116 1.1E-31 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2061 93d10a9b317cb79a19674ba557cbd8d2 179 SUPERFAMILY SSF56925 30 179 2.12E-27 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_2143 054eb81548425a83568a9c3c66137996 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 334 7.0E-42 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 YPK_2143 054eb81548425a83568a9c3c66137996 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 8.3E-118 T 12-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 YPK_2143 054eb81548425a83568a9c3c66137996 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 1.2E-33 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 YPK_2143 054eb81548425a83568a9c3c66137996 334 Gene3D G3DSA:1.10.8.60 185 258 1.5E-29 T 12-10-2018 YPK_2143 054eb81548425a83568a9c3c66137996 334 Gene3D G3DSA:1.10.10.10 260 334 1.1E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2143 054eb81548425a83568a9c3c66137996 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 185.486 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 YPK_2143 054eb81548425a83568a9c3c66137996 334 Gene3D G3DSA:3.40.50.300 23 184 8.3E-40 T 12-10-2018 YPK_2143 054eb81548425a83568a9c3c66137996 334 SUPERFAMILY SSF46785 260 331 3.27E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2143 054eb81548425a83568a9c3c66137996 334 SMART SM00382 54 181 1.7E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2143 054eb81548425a83568a9c3c66137996 334 SUPERFAMILY SSF52540 23 255 4.07E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2143 054eb81548425a83568a9c3c66137996 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 4.6E-149 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 YPK_0422 bc007326df0f037c6253da5a65abb178 382 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 4 349 2.8E-189 T 12-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 YPK_0422 bc007326df0f037c6253da5a65abb178 382 Pfam PF00296 Luciferase-like monooxygenase 4 325 1.8E-86 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 YPK_0422 bc007326df0f037c6253da5a65abb178 382 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 3 379 78.715 T 12-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 YPK_0422 bc007326df0f037c6253da5a65abb178 382 SUPERFAMILY SSF51679 4 349 1.27E-97 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 YPK_0422 bc007326df0f037c6253da5a65abb178 382 Gene3D G3DSA:3.20.20.30 1 362 5.0E-153 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 YPK_2044 0c8b33d5bdeaa2a9ae2bf806f967282d 332 Pfam PF00591 Glycosyl transferase family, a/b domain 74 321 7.1E-99 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_2044 0c8b33d5bdeaa2a9ae2bf806f967282d 332 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 6 329 3.1E-126 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 YPK_2044 0c8b33d5bdeaa2a9ae2bf806f967282d 332 SUPERFAMILY SSF47648 1 67 1.28E-16 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_2044 0c8b33d5bdeaa2a9ae2bf806f967282d 332 SUPERFAMILY SSF52418 70 328 5.63E-92 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_2044 0c8b33d5bdeaa2a9ae2bf806f967282d 332 Gene3D G3DSA:1.20.970.10 11 183 1.2E-124 T 12-10-2018 YPK_2044 0c8b33d5bdeaa2a9ae2bf806f967282d 332 Gene3D G3DSA:3.40.1030.10 67 321 1.2E-124 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_2044 0c8b33d5bdeaa2a9ae2bf806f967282d 332 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 331 38.968 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 YPK_2044 0c8b33d5bdeaa2a9ae2bf806f967282d 332 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 62 1.1E-13 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_1464 8c72ec641c041e69532c410d8651abe4 364 Gene3D G3DSA:1.10.8.350 60 232 6.5E-116 T 12-10-2018 YPK_1464 8c72ec641c041e69532c410d8651abe4 364 Pfam PF13406 Transglycosylase SLT domain 55 349 8.5E-92 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 YPK_1464 8c72ec641c041e69532c410d8651abe4 364 SUPERFAMILY SSF53955 55 351 1.45E-93 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_1464 8c72ec641c041e69532c410d8651abe4 364 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 61 352 6.7E-121 T 12-10-2018 IPR011757 Lytic transglycosylase MltB YPK_1464 8c72ec641c041e69532c410d8651abe4 364 Gene3D G3DSA:1.10.530.10 98 352 6.5E-116 T 12-10-2018 YPK_4095 acab0fd9a97fdd3e0fcc56e8edf00160 413 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 33 408 1.6E-141 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_4095 acab0fd9a97fdd3e0fcc56e8edf00160 413 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 30 408 2.1E-206 T 12-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 YPK_4095 acab0fd9a97fdd3e0fcc56e8edf00160 413 Gene3D G3DSA:3.90.1150.10 275 412 2.8E-54 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_4095 acab0fd9a97fdd3e0fcc56e8edf00160 413 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 217 231 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_4095 acab0fd9a97fdd3e0fcc56e8edf00160 413 PIRSF PIRSF001434 21 410 2.6E-134 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_4095 acab0fd9a97fdd3e0fcc56e8edf00160 413 Gene3D G3DSA:3.40.640.10 28 274 1.5E-86 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_4095 acab0fd9a97fdd3e0fcc56e8edf00160 413 SUPERFAMILY SSF53383 32 408 1.63E-121 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1559 dbcf7288dc25175603d8506895b3d353 310 Gene3D G3DSA:1.10.10.10 8 92 9.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1559 dbcf7288dc25175603d8506895b3d353 310 Gene3D G3DSA:3.40.190.10 169 262 1.2E-61 T 12-10-2018 YPK_1559 dbcf7288dc25175603d8506895b3d353 310 SUPERFAMILY SSF46785 11 119 2.13E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1559 dbcf7288dc25175603d8506895b3d353 310 SUPERFAMILY SSF53850 96 289 1.14E-29 T 12-10-2018 YPK_1559 dbcf7288dc25175603d8506895b3d353 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1559 dbcf7288dc25175603d8506895b3d353 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1559 dbcf7288dc25175603d8506895b3d353 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1559 dbcf7288dc25175603d8506895b3d353 310 Gene3D G3DSA:3.40.190.10 103 269 1.2E-61 T 12-10-2018 YPK_1559 dbcf7288dc25175603d8506895b3d353 310 Pfam PF03466 LysR substrate binding domain 98 273 8.4E-28 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_1559 dbcf7288dc25175603d8506895b3d353 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 7.0E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 SMART SM00855 5 191 9.7E-28 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 248 1.8E-126 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 Gene3D G3DSA:3.40.50.1240 2 250 1.2E-92 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 12-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 SUPERFAMILY SSF53254 4 247 3.3E-78 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 128 1.9E-30 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 46.166 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 PIRSF PIRSF000709 3 116 3.7E-9 T 12-10-2018 YPK_2948 6b0446fb5ba0fc12a1c416885e5ea31b 250 PIRSF PIRSF000709 172 237 0.075 T 12-10-2018 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 84 215 1.1E-21 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 Pfam PF14815 NUDIX domain 281 390 1.1E-23 T 12-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 SMART SM00478 87 238 7.7E-53 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 Pfam PF00633 Helix-hairpin-helix motif 148 175 1.1E-8 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 Gene3D G3DSA:1.10.1670.10 58 259 3.9E-89 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 240 256 - T 12-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 SUPERFAMILY SSF55811 268 394 5.41E-24 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 240 256 7.0E-4 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 Gene3D G3DSA:1.10.340.30 69 180 3.9E-89 T 12-10-2018 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 SUPERFAMILY SSF48150 51 273 4.87E-79 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 ProSitePatterns PS01155 Endonuclease III family signature. 150 179 - T 12-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 53 324 2.5E-124 T 12-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 SMART SM00525 239 259 2.6E-4 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 YPK_0820 8e6a171ddfa864b519a4b5a866709f18 419 Gene3D G3DSA:3.90.79.10 270 397 1.2E-11 T 12-10-2018 YPK_0426 cd3d032ee3bde668d5d50b02cde25e30 451 Pfam PF00860 Permease family 28 411 8.4E-82 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 YPK_1240 e5d9a1287d67a5b350f1c98e931b0871 225 Gene3D G3DSA:2.40.50.230 34 132 1.8E-22 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 391 51.422 T 12-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 SUPERFAMILY SSF56059 113 314 8.31E-55 T 12-10-2018 YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 SUPERFAMILY SSF52440 3 112 2.45E-35 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 Gene3D G3DSA:3.30.1490.20 123 196 6.1E-31 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 390 3.4E-186 T 12-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 Gene3D G3DSA:3.30.470.20 197 390 3.2E-58 T 12-10-2018 YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 Pfam PF02222 ATP-grasp domain 123 295 3.1E-55 T 12-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 SUPERFAMILY SSF51246 319 391 1.73E-18 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 YPK_2447 ec705b0aa08f8f8f3973095d0a21b261 393 Gene3D G3DSA:3.40.50.20 2 122 6.3E-53 T 12-10-2018 YPK_1839 6b419c8d1454ae70331c8721e3d35cfd 338 SUPERFAMILY SSF82649 248 336 7.32E-23 T 12-10-2018 YPK_1839 6b419c8d1454ae70331c8721e3d35cfd 338 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 4 327 1.9E-124 T 12-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 YPK_1839 6b419c8d1454ae70331c8721e3d35cfd 338 Pfam PF03099 Biotin/lipoate A/B protein ligase family 52 158 3.4E-8 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 YPK_1839 6b419c8d1454ae70331c8721e3d35cfd 338 Gene3D G3DSA:3.30.390.50 250 338 1.2E-27 T 12-10-2018 YPK_1839 6b419c8d1454ae70331c8721e3d35cfd 338 Hamap MF_01602 Lipoate-protein ligase A [lplA]. 1 338 57.052 T 12-10-2018 IPR023741 Lipoate-protein ligase A GO:0009249|GO:0016979 KEGG: 00785+6.3.1.20 YPK_1839 6b419c8d1454ae70331c8721e3d35cfd 338 SUPERFAMILY SSF55681 4 247 2.15E-78 T 12-10-2018 YPK_1839 6b419c8d1454ae70331c8721e3d35cfd 338 Gene3D G3DSA:3.30.930.10 2 249 3.6E-87 T 12-10-2018 YPK_1839 6b419c8d1454ae70331c8721e3d35cfd 338 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 250 333 3.8E-18 T 12-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 Gene3D G3DSA:3.40.50.720 1 180 5.4E-57 T 12-10-2018 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 Gene3D G3DSA:1.20.5.320 436 469 4.0E-22 T 12-10-2018 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 174 8.5E-52 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 SUPERFAMILY SSF51735 4 172 3.26E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 357 379 1.5E-89 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.5E-89 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.5E-89 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.5E-89 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.5E-89 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.5E-89 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 Gene3D G3DSA:1.10.1040.10 181 435 9.3E-112 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 PIRSF PIRSF000109 1 469 3.3E-242 T 12-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 SMART SM01350 179 468 1.7E-224 T 12-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 12-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 5.2E-229 T 12-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 467 2.6E-134 T 12-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 YPK_2535 ba5338606d1b924ac5953b8967eca97f 469 SUPERFAMILY SSF48179 177 468 9.78E-133 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_2557 e918cfcdf63d0c92058189eef7a4608c 417 Pfam PF08309 LVIVD repeat 221 249 0.35 T 12-10-2018 IPR013211 LVIVD YPK_2557 e918cfcdf63d0c92058189eef7a4608c 417 SUPERFAMILY SSF51004 15 318 3.92E-9 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily YPK_0819 75c9142cdd4d6e618471779118f3b852 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.386 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 YPK_0819 75c9142cdd4d6e618471779118f3b852 90 PIRSF PIRSF029827 1 90 7.3E-43 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 YPK_0819 75c9142cdd4d6e618471779118f3b852 90 Gene3D G3DSA:1.10.3880.10 1 90 1.6E-36 T 12-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 YPK_0819 75c9142cdd4d6e618471779118f3b852 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 6.0E-39 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 YPK_0819 75c9142cdd4d6e618471779118f3b852 90 SUPERFAMILY SSF111148 1 89 4.45E-39 T 12-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 YPK_0819 75c9142cdd4d6e618471779118f3b852 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 5.4E-39 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 Gene3D G3DSA:3.40.50.970 1 196 2.1E-62 T 12-10-2018 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 PIRSF PIRSF004983 1 564 3.4E-178 T 12-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 559 32.614 T 12-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 436 8.0E-142 T 12-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 Gene3D G3DSA:3.40.50.1220 217 342 8.4E-47 T 12-10-2018 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 SUPERFAMILY SSF52518 369 559 8.04E-34 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 SUPERFAMILY SSF52518 7 176 5.35E-31 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 Gene3D G3DSA:3.40.50.970 357 562 1.6E-61 T 12-10-2018 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 425 541 8.7E-8 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 Pfam PF16582 Middle domain of thiamine pyrophosphate 184 394 7.6E-88 T 12-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 YPK_1589 d77b0d111324ef46d86cac9d2f656788 567 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 169 2.2E-27 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 131 143 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 366 386 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 246 1.3E-62 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 SUPERFAMILY SSF53067 4 249 6.57E-69 T 12-10-2018 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 Gene3D G3DSA:3.30.420.40 248 503 2.6E-81 T 12-10-2018 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 257 454 4.3E-31 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 PIRSF PIRSF000538 1 507 5.2E-142 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 SUPERFAMILY SSF53067 248 500 1.17E-61 T 12-10-2018 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 TIGRFAM TIGR01312 XylB: xylulokinase 5 495 7.2E-148 T 12-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 YPK_2770 edc17d2fe6f282a868735b64418dfadb 511 Gene3D G3DSA:3.30.420.40 1 237 5.7E-79 T 12-10-2018 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 SMART SM00959 5 47 8.6E-17 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 Gene3D G3DSA:2.40.50.140 48 117 2.0E-35 T 12-10-2018 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 SMART SM00357 52 118 2.0E-18 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 249.558 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 SUPERFAMILY SSF52540 90 371 2.66E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 SMART SM00382 170 355 2.0E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.9E-22 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 Gene3D G3DSA:1.10.720.10 1 47 4.6E-24 T 12-10-2018 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.8E-16 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 SUPERFAMILY SSF68912 1 46 6.67E-12 T 12-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 1.2E-220 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 SUPERFAMILY SSF50249 48 125 5.57E-30 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 Gene3D G3DSA:3.40.50.300 130 417 9.7E-134 T 12-10-2018 YPK_4034 4c8853c8c64185b14d6bddccc600c3b6 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 3.2E-32 T 12-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 YPK_3046 f0c3296ed0f08facc48e616e3e1b9379 328 SUPERFAMILY SSF55347 124 287 1.28E-33 T 12-10-2018 YPK_3046 f0c3296ed0f08facc48e616e3e1b9379 328 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 162 234 9.7E-7 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 YPK_3046 f0c3296ed0f08facc48e616e3e1b9379 328 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 1 326 3.1E-131 T 12-10-2018 IPR030827 Inositol 2-dehydrogenase YPK_3046 f0c3296ed0f08facc48e616e3e1b9379 328 Gene3D G3DSA:3.30.360.10 138 268 7.1E-93 T 12-10-2018 YPK_3046 f0c3296ed0f08facc48e616e3e1b9379 328 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 119 8.2E-20 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YPK_3046 f0c3296ed0f08facc48e616e3e1b9379 328 Gene3D G3DSA:3.40.50.720 4 316 7.1E-93 T 12-10-2018 YPK_3046 f0c3296ed0f08facc48e616e3e1b9379 328 SUPERFAMILY SSF51735 2 143 3.61E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 SUPERFAMILY SSF82866 812 1010 9.29E-42 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 SUPERFAMILY SSF82693 555 650 1.55E-17 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Gene3D G3DSA:3.30.70.1440 650 847 7.8E-293 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 SUPERFAMILY SSF82693 136 324 1.39E-21 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 SUPERFAMILY SSF82714 703 785 3.01E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Gene3D G3DSA:3.30.70.1430 557 649 7.8E-293 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Gene3D G3DSA:1.20.1640.10 503 1005 7.8E-293 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Gene3D G3DSA:3.30.2090.10 179 269 7.8E-293 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Gene3D G3DSA:3.30.70.1320 135 326 7.8E-293 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 SUPERFAMILY SSF82693 665 833 1.52E-5 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Gene3D G3DSA:3.30.2090.10 701 789 7.8E-293 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Gene3D G3DSA:3.30.70.1430 40 797 7.8E-293 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 SUPERFAMILY SSF82866 290 491 1.44E-46 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 3.8E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 SUPERFAMILY SSF82714 183 265 1.14E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1024 27.003 T 12-10-2018 IPR023931 Multidrug resistance protein MdtC YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 SUPERFAMILY SSF82693 40 135 1.62E-23 T 12-10-2018 YPK_1330 939f913fb0057d3bc4971a3e6b4e33b1 1024 Gene3D G3DSA:1.20.1640.10 10 502 7.8E-293 T 12-10-2018 YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 Gene3D G3DSA:3.80.30.20 180 414 1.1E-84 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 Pfam PF00919 Uncharacterized protein family UPF0004 39 139 1.5E-28 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 Pfam PF04055 Radical SAM superfamily 186 360 1.2E-27 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 Gene3D G3DSA:3.40.50.12160 38 172 7.2E-33 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 Pfam PF01938 TRAM domain 413 475 4.2E-18 T 12-10-2018 IPR002792 TRAM domain YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 SUPERFAMILY SSF102114 162 407 4.71E-64 T 12-10-2018 YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 39 473 4.6E-207 T 12-10-2018 YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 39 472 2.8E-157 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 SMART SM00729 182 402 3.5E-64 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 38 475 74.001 T 12-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 YPK_3005 0a78433d481fca32d1a5b95266eaa1b6 509 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 186 206 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 Gene3D G3DSA:2.40.10.120 39 263 2.0E-86 T 12-10-2018 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 125 145 5.8E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 309 321 5.8E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 166 190 5.8E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 104 116 5.8E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 201 218 5.8E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 PRINTS PR00834 HtrA/DegQ protease family signature 223 240 5.8E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 375 445 1.4E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 Gene3D G3DSA:2.30.42.10 264 366 6.1E-28 T 12-10-2018 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 SMART SM00228 269 351 1.3E-13 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 SMART SM00228 352 449 5.1E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 455 7.1E-161 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 SUPERFAMILY SSF50156 382 456 3.55E-15 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 Pfam PF13180 PDZ domain 280 360 1.0E-15 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 Gene3D G3DSA:2.30.42.10 367 457 5.9E-25 T 12-10-2018 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 SUPERFAMILY SSF50156 227 352 8.54E-24 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 SUPERFAMILY SSF50494 39 261 1.6E-64 T 12-10-2018 IPR009003 Peptidase S1, PA clan YPK_0520 1dff187c67b2d682cbd0f566448218ee 457 Pfam PF13365 Trypsin-like peptidase domain 94 230 3.3E-33 T 12-10-2018 YPK_2590 86bdb8827191e4d3591c2ccdfcdcea20 533 Pfam PF16989 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ 230 490 3.7E-88 T 12-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 YPK_2590 86bdb8827191e4d3591c2ccdfcdcea20 533 Pfam PF06812 ImpA, N-terminal, type VI secretion system 33 138 7.1E-20 T 12-10-2018 IPR010657 ImpA, N-terminal YPK_2590 86bdb8827191e4d3591c2ccdfcdcea20 533 TIGRFAM TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family 29 490 1.3E-112 T 12-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 SUPERFAMILY SSF51246 278 353 2.2E-18 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 32.684 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 Gene3D G3DSA:3.30.470.20 152 354 2.6E-79 T 12-10-2018 YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 SUPERFAMILY SSF52440 2 74 3.17E-15 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 SUPERFAMILY SSF56059 79 274 1.02E-56 T 12-10-2018 YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 324 3.0E-108 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 Gene3D G3DSA:3.40.50.20 1 70 4.5E-31 T 12-10-2018 YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 Pfam PF02222 ATP-grasp domain 88 254 3.0E-53 T 12-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YPK_3156 6d90c7ae595f19cff93b35e1309d4aa3 354 Gene3D G3DSA:3.30.1490.20 94 151 5.1E-21 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_4066 33449a0730a215eadbd6b53e45ed73aa 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 315 1.1E-41 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_2014 dfebfed98e745e4fc2b11d773be646fe 332 SUPERFAMILY SSF51735 1 318 6.25E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2014 dfebfed98e745e4fc2b11d773be646fe 332 Gene3D G3DSA:3.40.50.720 6 305 1.9E-114 T 12-10-2018 YPK_2014 dfebfed98e745e4fc2b11d773be646fe 332 Gene3D G3DSA:3.90.25.10 178 315 1.9E-114 T 12-10-2018 YPK_2014 dfebfed98e745e4fc2b11d773be646fe 332 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 206 4.2E-19 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Gene3D G3DSA:3.40.50.300 205 379 1.2E-47 T 12-10-2018 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Pfam PF01926 50S ribosome-binding GTPase 210 327 8.4E-24 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Pfam PF01926 50S ribosome-binding GTPase 5 119 5.3E-27 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 PIRSF PIRSF006485 1 471 1.6E-177 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 3.9E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 3.9E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Hamap MF_00195 GTPase Der [der]. 2 466 38.65 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Gene3D G3DSA:3.40.50.300 2 160 1.9E-42 T 12-10-2018 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 383 463 2.6E-25 T 12-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 463 4.4E-177 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 SUPERFAMILY SSF52540 207 469 2.7E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 SUPERFAMILY SSF52540 4 168 6.39E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 Gene3D G3DSA:3.30.300.20 383 465 1.5E-19 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 153 3.4E-20 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_1297 f9d3ee1a6cc27a9bd162b2cd552b0e7e 495 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 207 372 5.2E-21 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_3898 97f6a7ce92d8fbdb59b3e5953bbe00fc 404 Pfam PF04143 Sulphur transport 5 160 9.6E-25 T 12-10-2018 IPR007272 Sulphur transport domain YPK_3898 97f6a7ce92d8fbdb59b3e5953bbe00fc 404 Pfam PF04143 Sulphur transport 237 394 1.1E-24 T 12-10-2018 IPR007272 Sulphur transport domain YPK_2382 d341688f425f949f0c9dd759e84bc789 466 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 106 1.0E-21 T 12-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 YPK_2382 d341688f425f949f0c9dd759e84bc789 466 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 225 455 3.5E-63 T 12-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 YPK_2382 d341688f425f949f0c9dd759e84bc789 466 Pfam PF07196 Flagellin hook IN motif 128 185 2.4E-11 T 12-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 YPK_4035 d35a787a906916ffd87744da48c7208c 108 Pfam PF00085 Thioredoxin 5 106 5.2E-34 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 YPK_4035 d35a787a906916ffd87744da48c7208c 108 PRINTS PR00421 Thioredoxin family signature 24 32 6.1E-10 T 12-10-2018 YPK_4035 d35a787a906916ffd87744da48c7208c 108 PRINTS PR00421 Thioredoxin family signature 72 83 6.1E-10 T 12-10-2018 YPK_4035 d35a787a906916ffd87744da48c7208c 108 PRINTS PR00421 Thioredoxin family signature 32 41 6.1E-10 T 12-10-2018 YPK_4035 d35a787a906916ffd87744da48c7208c 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YPK_4035 d35a787a906916ffd87744da48c7208c 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 9.3E-39 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 YPK_4035 d35a787a906916ffd87744da48c7208c 108 SUPERFAMILY SSF52833 2 107 1.03E-41 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_4035 d35a787a906916ffd87744da48c7208c 108 Gene3D G3DSA:3.40.30.10 1 108 6.1E-38 T 12-10-2018 YPK_4035 d35a787a906916ffd87744da48c7208c 108 PIRSF PIRSF000077 2 108 4.0E-44 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 YPK_0328 1a5cbc0702113c26a2f389f0a9bd97bb 316 PIRSF PIRSF000545 1 316 6.2E-148 T 12-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 YPK_0328 1a5cbc0702113c26a2f389f0a9bd97bb 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 188.755 T 12-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 YPK_0328 1a5cbc0702113c26a2f389f0a9bd97bb 316 Gene3D G3DSA:3.40.50.300 9 316 1.4E-94 T 12-10-2018 YPK_0328 1a5cbc0702113c26a2f389f0a9bd97bb 316 SUPERFAMILY SSF52540 10 315 1.49E-76 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0328 1a5cbc0702113c26a2f389f0a9bd97bb 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 10 316 9.0E-170 T 12-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 YPK_0328 1a5cbc0702113c26a2f389f0a9bd97bb 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 244 5.8E-16 T 12-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 Gene3D G3DSA:1.10.10.10 92 173 2.0E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 SUPERFAMILY SSF46785 91 171 6.06E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 Gene3D G3DSA:3.40.190.10 184 375 6.4E-48 T 12-10-2018 YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 SUPERFAMILY SSF46785 2 76 4.5E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 Gene3D G3DSA:3.40.190.10 257 358 6.4E-48 T 12-10-2018 YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 Pfam PF03466 LysR substrate binding domain 178 385 1.1E-28 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 Gene3D G3DSA:1.10.10.10 1 80 1.0E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 SUPERFAMILY SSF53850 179 388 5.11E-35 T 12-10-2018 YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 95 152 1.3E-12 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4119 8bb266141c973541ed6a7808b6169ce7 392 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 51 1.9E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0492 8c8f2f814ecf1c5303e73918ea04ae38 128 PIRSF PIRSF000029 1 128 2.2E-60 T 12-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 YPK_0492 8c8f2f814ecf1c5303e73918ea04ae38 128 SUPERFAMILY SSF47175 23 128 5.18E-36 T 12-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 YPK_0492 8c8f2f814ecf1c5303e73918ea04ae38 128 Gene3D G3DSA:1.20.120.10 18 128 1.5E-41 T 12-10-2018 YPK_0492 8c8f2f814ecf1c5303e73918ea04ae38 128 Pfam PF07361 Cytochrome b562 25 128 5.8E-32 T 12-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 YPK_2544 502391689ee6125a88ef2c581d14cb75 614 Gene3D G3DSA:1.10.510.40 397 604 6.4E-71 T 12-10-2018 YPK_2544 502391689ee6125a88ef2c581d14cb75 614 Gene3D G3DSA:1.10.274.90 6 148 3.2E-45 T 12-10-2018 YPK_2544 502391689ee6125a88ef2c581d14cb75 614 Pfam PF04183 IucA / IucC family 159 408 7.1E-77 T 12-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 YPK_2544 502391689ee6125a88ef2c581d14cb75 614 Pfam PF06276 Ferric iron reductase FhuF-like transporter 429 586 5.4E-41 T 12-10-2018 IPR022770 Ferric iron reductase FhuF domain YPK_0301 58c42f57a3daae6651d63045c445eb25 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 2.5E-26 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0301 58c42f57a3daae6651d63045c445eb25 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 8.8E-20 T 12-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain YPK_0301 58c42f57a3daae6651d63045c445eb25 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 12-10-2018 IPR018038 Ribosomal protein L30, conserved site YPK_0301 58c42f57a3daae6651d63045c445eb25 59 PIRSF PIRSF002211 1 59 3.5E-28 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0301 58c42f57a3daae6651d63045c445eb25 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 22.06 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0301 58c42f57a3daae6651d63045c445eb25 59 Gene3D G3DSA:3.30.1390.20 1 59 7.9E-27 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily YPK_0301 58c42f57a3daae6651d63045c445eb25 59 SUPERFAMILY SSF55129 3 59 1.7E-21 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 1.1E-300 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 2.5E-52 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 306.814 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 SUPERFAMILY SSF54980 399 493 2.11E-24 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 2.1E-49 T 12-10-2018 IPR013842 GTP-binding protein LepA, C-terminal YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:3.30.70.2570 479 553 6.1E-34 T 12-10-2018 IPR038363 LepA, C-terminal domain superfamily YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:2.40.30.10 186 285 5.6E-34 T 12-10-2018 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 SUPERFAMILY SSF54980 292 370 3.02E-18 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 169 6.8E-17 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 SUPERFAMILY SSF52540 2 234 1.32E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 4.1E-11 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:3.30.70.870 286 367 2.3E-35 T 12-10-2018 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Pfam PF00679 Elongation factor G C-terminus 399 482 7.1E-20 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:3.40.50.300 1 185 2.3E-70 T 12-10-2018 YPK_1187 d033e8c484aea615f05c8b2f91635f80 599 Gene3D G3DSA:3.30.70.3380 368 478 3.6E-40 T 12-10-2018 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 9.4E-57 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 9.4E-57 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 9.4E-57 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 9.4E-57 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 9.4E-57 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 SUPERFAMILY SSF53633 6 256 3.14E-65 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 Gene3D G3DSA:3.40.1160.10 2 258 6.5E-87 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 Pfam PF00696 Amino acid kinase family 6 234 8.1E-44 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 Pfam PF01472 PUA domain 276 350 8.4E-21 T 12-10-2018 IPR002478 PUA domain GO:0003723 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 SUPERFAMILY SSF88697 276 366 5.36E-23 T 12-10-2018 IPR015947 PUA-like superfamily YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 263 35.94 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 2.5E-151 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 PIRSF PIRSF000729 1 367 3.4E-141 T 12-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 Gene3D G3DSA:2.30.130.10 266 367 1.0E-28 T 12-10-2018 IPR036974 PUA domain superfamily GO:0003723 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 12-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YPK_3288 2bba4a88aae9bf859fc4d706999c715f 367 SMART SM00359 276 359 1.7E-21 T 12-10-2018 IPR002478 PUA domain GO:0003723 YPK_1377 3b482a623d19cfdfc9d3f7d414d4626a 356 Gene3D G3DSA:3.40.50.300 1 244 3.1E-75 T 12-10-2018 YPK_1377 3b482a623d19cfdfc9d3f7d414d4626a 356 SMART SM00382 28 217 8.4E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1377 3b482a623d19cfdfc9d3f7d414d4626a 356 SUPERFAMILY SSF52540 4 249 8.57E-81 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1377 3b482a623d19cfdfc9d3f7d414d4626a 356 SUPERFAMILY SSF50331 243 330 1.45E-5 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1377 3b482a623d19cfdfc9d3f7d414d4626a 356 Pfam PF00005 ABC transporter 19 167 4.0E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1377 3b482a623d19cfdfc9d3f7d414d4626a 356 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2666 4cd6a69c1e6ce3fc8cce35fe258b3510 763 Gene3D G3DSA:3.60.15.10 503 740 4.7E-50 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2666 4cd6a69c1e6ce3fc8cce35fe258b3510 763 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 72 727 3.3E-182 T 12-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 YPK_2666 4cd6a69c1e6ce3fc8cce35fe258b3510 763 SUPERFAMILY SSF56281 505 751 1.7E-47 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2666 4cd6a69c1e6ce3fc8cce35fe258b3510 763 Pfam PF03772 Competence protein 209 477 5.0E-52 T 12-10-2018 IPR004477 ComEC/Rec2-related protein YPK_2666 4cd6a69c1e6ce3fc8cce35fe258b3510 763 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 230 413 8.1E-38 T 12-10-2018 IPR004477 ComEC/Rec2-related protein YPK_2666 4cd6a69c1e6ce3fc8cce35fe258b3510 763 SMART SM00849 514 698 6.3E-15 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_2666 4cd6a69c1e6ce3fc8cce35fe258b3510 763 Pfam PF00753 Metallo-beta-lactamase superfamily 514 690 1.5E-18 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_2666 4cd6a69c1e6ce3fc8cce35fe258b3510 763 Pfam PF13567 Domain of unknown function (DUF4131) 33 162 4.9E-11 T 12-10-2018 IPR025405 Domain of unknown function DUF4131 YPK_1183 3657c881c3d566865634af056ee069ac 218 SUPERFAMILY SSF89069 1 66 7.19E-20 T 12-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 YPK_1183 3657c881c3d566865634af056ee069ac 218 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 132 188 2.6E-22 T 12-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal YPK_1183 3657c881c3d566865634af056ee069ac 218 PIRSF PIRSF016938 1 206 2.8E-31 T 12-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 YPK_1183 3657c881c3d566865634af056ee069ac 218 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 1.1E-34 T 12-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 YPK_1183 3657c881c3d566865634af056ee069ac 218 Gene3D G3DSA:1.10.10.880 1 66 4.1E-27 T 12-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 Gene3D G3DSA:3.30.390.30 351 474 4.2E-43 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 1.8E-19 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 179 197 1.8E-19 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 1.8E-19 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 296 318 1.8E-19 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.8E-19 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 Gene3D G3DSA:3.50.50.60 152 273 9.3E-95 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 463 3.2E-18 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 438 458 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 311 318 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 416 431 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 2.1E-40 T 12-10-2018 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 SUPERFAMILY SSF51905 1 370 2.26E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 SUPERFAMILY SSF55424 353 471 1.72E-25 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 Gene3D G3DSA:1.10.287.990 37 107 9.3E-95 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 PIRSF PIRSF000350 2 472 1.7E-57 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 331 1.1E-37 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_4081 41ad63b10d7cba3fa520aa67b68ff14a 487 Gene3D G3DSA:3.50.50.60 7 334 9.3E-95 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1118 16925d89f717312ac146e565ec59ae94 134 TIGRFAM TIGR00333 nrdI: nrdI protein 5 132 2.7E-53 T 12-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPK_1118 16925d89f717312ac146e565ec59ae94 134 PIRSF PIRSF005087 1 134 2.8E-54 T 12-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPK_1118 16925d89f717312ac146e565ec59ae94 134 Pfam PF07972 NrdI Flavodoxin like 5 123 2.6E-47 T 12-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI YPK_1118 16925d89f717312ac146e565ec59ae94 134 Gene3D G3DSA:3.40.50.360 3 134 5.8E-46 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_1118 16925d89f717312ac146e565ec59ae94 134 SUPERFAMILY SSF52218 1 132 2.69E-23 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_1118 16925d89f717312ac146e565ec59ae94 134 Hamap MF_00128 Protein NrdI [nrdI]. 3 133 36.262 T 12-10-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 Pfam PF12833 Helix-turn-helix domain 204 278 2.7E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 SUPERFAMILY SSF46689 177 227 2.96E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 SUPERFAMILY SSF51215 15 162 6.8E-22 T 12-10-2018 IPR037923 Transcription regulator HTH-like YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 Gene3D G3DSA:1.10.10.60 174 282 1.0E-28 T 12-10-2018 YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 Gene3D G3DSA:2.60.120.10 7 112 6.1E-7 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 SMART SM00342 193 276 3.6E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 Pfam PF02311 AraC-like ligand binding domain 30 157 1.7E-12 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 SUPERFAMILY SSF46689 229 280 9.86E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 276 3.9E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_0415 3bcef87da5efbea9c969009b4d1ece0e 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 260 3.9E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 Gene3D G3DSA:1.10.8.870 391 460 2.9E-27 T 12-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 SUPERFAMILY SSF51905 1 374 3.89E-36 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0152 960103021f3f63751eaf5e640cafa08b 504 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 492 2.1E-12 T 12-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 9 26 - T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 Gene3D G3DSA:3.30.9.10 82 320 2.6E-145 T 12-10-2018 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 SUPERFAMILY SSF54373 226 319 2.16E-7 T 12-10-2018 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 Gene3D G3DSA:3.50.50.60 5 366 2.6E-145 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0152 960103021f3f63751eaf5e640cafa08b 504 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 Pfam PF01266 FAD dependent oxidoreductase 5 323 8.3E-49 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 4.8E-28 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 45 4.8E-28 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 27 4.8E-28 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 78 90 4.8E-28 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 4.8E-28 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0152 960103021f3f63751eaf5e640cafa08b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 4 16 4.8E-28 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 Gene3D G3DSA:1.10.287.180 2 77 1.1E-28 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 SUPERFAMILY SSF46557 4 79 5.36E-26 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 4 157 2.2E-71 T 12-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 Gene3D G3DSA:3.10.50.30 79 158 1.4E-32 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 Hamap MF_00930 Transcription elongation factor GreB [greB]. 2 157 52.892 T 12-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 SUPERFAMILY SSF54534 81 156 5.1E-24 T 12-10-2018 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 155 28.74 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 Pfam PF03449 Transcription elongation factor, N-terminal 5 75 1.3E-23 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 PIRSF PIRSF006092 1 158 3.4E-62 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 YPK_0171 80b197407cc1e66acf3b9c8dc2551033 171 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 2.9E-27 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Gene3D G3DSA:1.10.1780.10 1 147 1.5E-34 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 SUPERFAMILY SSF52540 546 851 2.94E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 842 8.8E-26 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 12-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 335 1.8E-13 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 SUPERFAMILY SSF52540 159 545 1.12E-99 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.6E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.6E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.6E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.6E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 SMART SM01086 766 855 2.3E-36 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 SUPERFAMILY SSF81923 4 156 1.86E-41 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 SMART SM00382 198 344 1.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 SMART SM00382 597 733 5.8E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Gene3D G3DSA:1.10.8.60 766 857 3.4E-26 T 12-10-2018 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Gene3D G3DSA:3.40.50.300 550 764 3.6E-92 T 12-10-2018 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 3.4E-9 T 12-10-2018 IPR004176 Clp, N-terminal YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 4.6E-15 T 12-10-2018 IPR004176 Clp, N-terminal YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 1.0E-56 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Gene3D G3DSA:3.40.50.300 148 342 2.8E-74 T 12-10-2018 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YPK_3349 95d29fcd7c1afef6e7005072941824a5 857 Gene3D G3DSA:3.40.50.300 343 544 8.6E-70 T 12-10-2018 YPK_3395 72fdfbf990e399e08e17887d40b0df9f 231 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 3.7E-127 T 12-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 YPK_3395 72fdfbf990e399e08e17887d40b0df9f 231 Gene3D G3DSA:3.40.225.10 1 231 2.9E-61 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_3395 72fdfbf990e399e08e17887d40b0df9f 231 SUPERFAMILY SSF53639 1 223 1.94E-68 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_3395 72fdfbf990e399e08e17887d40b0df9f 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 196 5.5E-45 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_3395 72fdfbf990e399e08e17887d40b0df9f 231 SMART SM01007 7 198 4.7E-65 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_0167 3a20f28cb95ef93f9fe10c53676daffb 85 Pfam PF09012 FeoC like transcriptional regulator 3 77 1.1E-19 T 12-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC YPK_0167 3a20f28cb95ef93f9fe10c53676daffb 85 Hamap MF_01586 Probable [Fe-S]-dependent transcriptional repressor [feoC]. 1 79 26.24 T 12-10-2018 IPR023732 Probable [Fe-S]-dependent transcriptional repressor YPK_0167 3a20f28cb95ef93f9fe10c53676daffb 85 SUPERFAMILY SSF46785 1 75 7.8E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0167 3a20f28cb95ef93f9fe10c53676daffb 85 Gene3D G3DSA:1.10.10.10 1 80 3.0E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 SUPERFAMILY SSF53706 1 638 2.49E-236 T 12-10-2018 YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 Pfam PF00384 Molybdopterin oxidoreductase 2 380 3.0E-25 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 Gene3D G3DSA:3.40.228.10 1 271 1.4E-73 T 12-10-2018 YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 Gene3D G3DSA:3.40.50.740 288 472 3.6E-59 T 12-10-2018 YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 Gene3D G3DSA:2.40.40.20 628 803 7.9E-75 T 12-10-2018 YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 802 0.0 T 12-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 Pfam PF01568 Molydopterin dinucleotide binding domain 681 796 1.3E-17 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 SUPERFAMILY SSF50692 617 803 4.35E-44 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 715 742 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YPK_0038 720bb9d67505433155bda55e5b91dcc8 803 Gene3D G3DSA:3.40.228.10 547 627 4.7E-28 T 12-10-2018 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 SUPERFAMILY SSF46977 437 537 7.06E-32 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 21 532 8.0E-224 T 12-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 PIRSF PIRSF000171 351 543 2.4E-13 T 12-10-2018 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 PIRSF PIRSF000171 12 261 6.6E-23 T 12-10-2018 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 23 42 1.3E-9 T 12-10-2018 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 367 389 1.3E-9 T 12-10-2018 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 Gene3D G3DSA:1.20.58.100 437 545 5.1E-46 T 12-10-2018 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 534 1.1E-14 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 SUPERFAMILY SSF51905 18 459 1.75E-73 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1181 6835bb76b6d4dbe5549725444545d022 545 Pfam PF00890 FAD binding domain 22 404 6.8E-101 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 Gene3D G3DSA:3.50.50.60 22 416 4.3E-154 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1181 6835bb76b6d4dbe5549725444545d022 545 Gene3D G3DSA:3.90.700.10 260 370 4.3E-154 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_1181 6835bb76b6d4dbe5549725444545d022 545 SUPERFAMILY SSF56425 250 365 2.84E-41 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 SUPERFAMILY SSF143800 1 66 3.65E-26 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 8.2E-33 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.3E-22 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 2.3E-22 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 2.3E-22 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 Gene3D G3DSA:2.30.170.50 1 70 1.9E-32 T 12-10-2018 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 Pfam PF01197 Ribosomal protein L31 1 64 4.4E-29 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4098 20b23a19f8ee5acc41d588eb597a09de 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 30.069 T 12-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 Pfam PF01264 Chorismate synthase 10 345 3.2E-143 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 354 37.844 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 1.9E-140 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 Gene3D G3DSA:3.60.150.10 1 360 9.4E-159 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 PIRSF PIRSF001456 3 358 3.1E-142 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1514 f73ef09bb719d60dd44f64f1c0bf22ef 361 SUPERFAMILY SSF103263 4 351 4.45E-149 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 YPK_1033 653463b6538c0dcac193641c1c3155d2 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 38.062 T 12-10-2018 IPR022927 RNA pyrophosphohydrolase RppH YPK_1033 653463b6538c0dcac193641c1c3155d2 175 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_1033 653463b6538c0dcac193641c1c3155d2 175 Gene3D G3DSA:3.90.79.10 1 160 4.6E-53 T 12-10-2018 YPK_1033 653463b6538c0dcac193641c1c3155d2 175 SUPERFAMILY SSF55811 6 155 4.6E-33 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_1033 653463b6538c0dcac193641c1c3155d2 175 PRINTS PR00502 NUDIX hydrolase family signature 47 62 6.2E-8 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_1033 653463b6538c0dcac193641c1c3155d2 175 PRINTS PR00502 NUDIX hydrolase family signature 33 47 6.2E-8 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_1033 653463b6538c0dcac193641c1c3155d2 175 Pfam PF00293 NUDIX domain 7 146 1.0E-28 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_2570 57dd792e5bc8ee621ee547d9e390c05a 289 Gene3D G3DSA:1.10.10.10 1 87 1.5E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2570 57dd792e5bc8ee621ee547d9e390c05a 289 Pfam PF03466 LysR substrate binding domain 85 285 8.4E-39 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2570 57dd792e5bc8ee621ee547d9e390c05a 289 SUPERFAMILY SSF53850 85 286 4.07E-37 T 12-10-2018 YPK_2570 57dd792e5bc8ee621ee547d9e390c05a 289 SUPERFAMILY SSF46785 1 109 1.52E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2570 57dd792e5bc8ee621ee547d9e390c05a 289 Gene3D G3DSA:3.40.190.290 89 288 2.3E-33 T 12-10-2018 YPK_2570 57dd792e5bc8ee621ee547d9e390c05a 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.2E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2762 78c97a85965b5e578824bc1e83b3b008 566 Gene3D G3DSA:3.40.50.2300 101 212 4.2E-38 T 12-10-2018 YPK_2762 78c97a85965b5e578824bc1e83b3b008 566 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 113 196 2.3E-39 T 12-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 YPK_2762 78c97a85965b5e578824bc1e83b3b008 566 SUPERFAMILY SSF52794 111 211 1.92E-34 T 12-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YPK_2762 78c97a85965b5e578824bc1e83b3b008 566 Pfam PF02378 Phosphotransferase system, EIIC 237 500 2.9E-16 T 12-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YPK_2762 78c97a85965b5e578824bc1e83b3b008 566 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 114 195 3.1E-18 T 12-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YPK_2762 78c97a85965b5e578824bc1e83b3b008 566 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 219 556 4.5E-143 T 12-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 YPK_2762 78c97a85965b5e578824bc1e83b3b008 566 SUPERFAMILY SSF52794 4 88 7.85E-11 T 12-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YPK_2858 d2bb2886a7072ed5a1eb01152fb35680 296 SUPERFAMILY SSF103481 45 146 6.02E-12 T 12-10-2018 YPK_2858 d2bb2886a7072ed5a1eb01152fb35680 296 Pfam PF00892 EamA-like transporter family 16 144 2.9E-21 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_2858 d2bb2886a7072ed5a1eb01152fb35680 296 Pfam PF00892 EamA-like transporter family 154 287 5.4E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_2858 d2bb2886a7072ed5a1eb01152fb35680 296 SUPERFAMILY SSF103481 187 290 9.55E-13 T 12-10-2018 YPK_1184 4552ec45de98101f8681438f0c62fbfc 318 Pfam PF17188 MucB/RseB C-terminal domain 219 312 1.5E-28 T 12-10-2018 IPR033436 MucB/RseB, C-terminal YPK_1184 4552ec45de98101f8681438f0c62fbfc 318 Pfam PF03888 MucB/RseB N-terminal domain 27 196 1.8E-60 T 12-10-2018 IPR033434 MucB/RseB, N-terminal YPK_1184 4552ec45de98101f8681438f0c62fbfc 318 Gene3D G3DSA:3.30.200.100 218 318 4.1E-30 T 12-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily YPK_1184 4552ec45de98101f8681438f0c62fbfc 318 Gene3D G3DSA:2.50.20.10 28 209 2.1E-52 T 12-10-2018 YPK_1184 4552ec45de98101f8681438f0c62fbfc 318 PIRSF PIRSF005427 1 318 8.1E-88 T 12-10-2018 IPR005588 MucB/RseB YPK_0731 166f1c9d2ed6f8b97f73213d4169b413 303 Pfam PF00691 OmpA family 170 265 1.3E-12 T 12-10-2018 IPR006665 OmpA-like domain YPK_0731 166f1c9d2ed6f8b97f73213d4169b413 303 SUPERFAMILY SSF103088 155 273 2.09E-19 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_0731 166f1c9d2ed6f8b97f73213d4169b413 303 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 18 67 6.1E-14 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain YPK_0731 166f1c9d2ed6f8b97f73213d4169b413 303 Gene3D G3DSA:3.30.1330.60 89 289 1.1E-42 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_1831 7e77339e8dfe124ab28bc3dc3556627e 384 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 1 379 71.275 T 12-10-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 YPK_1831 7e77339e8dfe124ab28bc3dc3556627e 384 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 373 4.5E-128 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_1831 7e77339e8dfe124ab28bc3dc3556627e 384 Gene3D G3DSA:3.40.640.10 1 252 1.7E-94 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1831 7e77339e8dfe124ab28bc3dc3556627e 384 Gene3D G3DSA:3.90.1150.10 253 382 2.6E-37 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1831 7e77339e8dfe124ab28bc3dc3556627e 384 PIRSF PIRSF000390 1 381 2.5E-111 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_1831 7e77339e8dfe124ab28bc3dc3556627e 384 SUPERFAMILY SSF53383 4 376 1.8E-110 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2207 d11360544bbeafe3185d58f33874344c 720 Gene3D G3DSA:3.90.930.1 196 337 6.8E-21 T 12-10-2018 YPK_2207 d11360544bbeafe3185d58f33874344c 720 Gene3D G3DSA:3.90.930.1 347 480 4.1E-19 T 12-10-2018 YPK_2207 d11360544bbeafe3185d58f33874344c 720 SUPERFAMILY SSF82185 422 547 9.81E-20 T 12-10-2018 YPK_2207 d11360544bbeafe3185d58f33874344c 720 SUPERFAMILY SSF81901 569 711 1.92E-33 T 12-10-2018 YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF08238 Sel1 repeat 672 705 3.3E-5 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF08238 Sel1 repeat 600 633 0.0084 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF08238 Sel1 repeat 581 597 1.0 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF08238 Sel1 repeat 635 670 2.2E-7 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2207 d11360544bbeafe3185d58f33874344c 720 SUPERFAMILY SSF82185 229 352 1.24E-20 T 12-10-2018 YPK_2207 d11360544bbeafe3185d58f33874344c 720 SMART SM00671 671 706 7.4E-8 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2207 d11360544bbeafe3185d58f33874344c 720 SMART SM00671 635 670 7.4E-9 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2207 d11360544bbeafe3185d58f33874344c 720 SMART SM00671 599 634 5.4E-4 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2207 d11360544bbeafe3185d58f33874344c 720 SMART SM00671 567 598 1.6 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF07661 MORN repeat variant 357 376 0.017 T 12-10-2018 IPR011652 MORN variant YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF07661 MORN repeat variant 384 400 0.49 T 12-10-2018 IPR011652 MORN variant YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF07661 MORN repeat variant 211 228 0.35 T 12-10-2018 IPR011652 MORN variant YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF07661 MORN repeat variant 307 326 0.016 T 12-10-2018 IPR011652 MORN variant YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF07661 MORN repeat variant 404 425 0.066 T 12-10-2018 IPR011652 MORN variant YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF07661 MORN repeat variant 259 278 0.14 T 12-10-2018 IPR011652 MORN variant YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF07661 MORN repeat variant 284 304 0.19 T 12-10-2018 IPR011652 MORN variant YPK_2207 d11360544bbeafe3185d58f33874344c 720 Pfam PF07661 MORN repeat variant 457 472 0.32 T 12-10-2018 IPR011652 MORN variant YPK_2207 d11360544bbeafe3185d58f33874344c 720 Gene3D G3DSA:1.25.40.10 528 720 6.3E-49 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3427 70b7fcdb874daf9fdc402f6b3f471648 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 1 207 2.1E-89 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 YPK_3427 70b7fcdb874daf9fdc402f6b3f471648 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 YPK_3427 70b7fcdb874daf9fdc402f6b3f471648 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 38.889 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 YPK_3427 70b7fcdb874daf9fdc402f6b3f471648 208 Gene3D G3DSA:3.40.50.150 1 207 8.5E-79 T 12-10-2018 YPK_3427 70b7fcdb874daf9fdc402f6b3f471648 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 6 206 3.7E-76 T 12-10-2018 YPK_3427 70b7fcdb874daf9fdc402f6b3f471648 208 SUPERFAMILY SSF53335 4 204 6.75E-48 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2462 6c5cc686bbb8077a24033660da0eac63 155 Pfam PF01047 MarR family 29 86 1.9E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_2462 6c5cc686bbb8077a24033660da0eac63 155 Gene3D G3DSA:1.10.10.10 1 134 1.7E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2462 6c5cc686bbb8077a24033660da0eac63 155 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 4 133 1.2E-54 T 12-10-2018 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 YPK_2462 6c5cc686bbb8077a24033660da0eac63 155 SMART SM00347 22 122 1.3E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_2462 6c5cc686bbb8077a24033660da0eac63 155 SUPERFAMILY SSF46785 4 138 1.34E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3483 58bb3b157f2de78720ef68a65a0c67d1 264 PIRSF PIRSF001356 1 263 1.7E-157 T 12-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 YPK_3483 58bb3b157f2de78720ef68a65a0c67d1 264 SUPERFAMILY SSF56276 43 173 9.02E-23 T 12-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 YPK_3483 58bb3b157f2de78720ef68a65a0c67d1 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 3 261 2.1E-148 T 12-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 YPK_3483 58bb3b157f2de78720ef68a65a0c67d1 264 Pfam PF02675 S-adenosylmethionine decarboxylase 33 169 4.4E-29 T 12-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 YPK_3483 58bb3b157f2de78720ef68a65a0c67d1 264 Gene3D G3DSA:3.60.90.10 95 185 5.3E-6 T 12-10-2018 YPK_3483 58bb3b157f2de78720ef68a65a0c67d1 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 177.52 T 12-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 323 339 - T 12-10-2018 IPR013793 Porin, Gram-negative type, conserved site YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 SUPERFAMILY SSF56935 22 371 1.36E-85 T 12-10-2018 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 Gene3D G3DSA:2.40.160.10 22 371 9.0E-154 T 12-10-2018 IPR023614 Porin domain superfamily YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 Pfam PF00267 Gram-negative porin 27 371 2.7E-139 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 3.2E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 3.2E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 3.2E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 235 247 3.2E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 323 340 3.2E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 3.4E-68 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 3.4E-68 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 3.4E-68 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 241 258 3.4E-68 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 3.4E-68 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2839 71c389b9a9612cf62fb69342f8efe00b 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 279 298 3.4E-68 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_3888 bcb4967dbd4c66435cc220ca47e420f7 63 Pfam PF10636 Hemin uptake protein hemP 28 63 2.1E-17 T 12-10-2018 IPR019600 Hemin uptake protein HemP YPK_3888 bcb4967dbd4c66435cc220ca47e420f7 63 Gene3D G3DSA:2.10.70.10 26 63 3.1E-18 T 12-10-2018 YPK_1448 bfe8170add88df1d6e473572719657d6 143 SUPERFAMILY SSF143100 5 65 8.11E-5 T 12-10-2018 IPR035069 TTHA1013/TTHA0281-like YPK_1448 bfe8170add88df1d6e473572719657d6 143 Pfam PF15970 HicB_like antitoxin of bacterial toxin-antitoxin system 3 83 3.7E-46 T 12-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 Pfam PF07690 Major Facilitator Superfamily 10 351 8.9E-46 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 3 374 3.8E-74 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 ProSitePatterns PS00216 Sugar transport proteins signature 1. 58 74 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 PRINTS PR01035 Tetracycline resistance protein signature 302 322 1.9E-7 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 PRINTS PR01035 Tetracycline resistance protein signature 44 63 1.9E-7 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 PRINTS PR01035 Tetracycline resistance protein signature 129 151 1.9E-7 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 PRINTS PR01035 Tetracycline resistance protein signature 14 30 1.9E-7 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 Gene3D G3DSA:1.20.1720.10 4 383 4.6E-92 T 12-10-2018 YPK_2106 4ba0ec75140ac80afc8c3337335959db 397 SUPERFAMILY SSF103473 4 384 1.44E-60 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1002 2170d9d6295084b351d8be90c0133060 138 SUPERFAMILY SSF46894 43 118 9.35E-6 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1002 2170d9d6295084b351d8be90c0133060 138 Gene3D G3DSA:1.10.10.10 27 121 9.0E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3846 83a294ac4ad6595c6277187d55e9f49a 418 SUPERFAMILY SSF51658 5 418 2.71E-83 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily YPK_3846 83a294ac4ad6595c6277187d55e9f49a 418 Hamap MF_00541 L-rhamnose isomerase [rhaA]. 1 418 276.585 T 12-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 YPK_3846 83a294ac4ad6595c6277187d55e9f49a 418 Pfam PF06134 L-rhamnose isomerase (RhaA) 4 418 4.4E-228 T 12-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 YPK_3846 83a294ac4ad6595c6277187d55e9f49a 418 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 9 418 0.0 T 12-10-2018 YPK_3846 83a294ac4ad6595c6277187d55e9f49a 418 TIGRFAM TIGR01748 rhaA: L-rhamnose isomerase 5 418 9.3E-236 T 12-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 YPK_3846 83a294ac4ad6595c6277187d55e9f49a 418 Gene3D G3DSA:3.20.20.150 1 418 1.1E-187 T 12-10-2018 YPK_0921 47d3f9e6b1da54d7840e3344d20424b9 238 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 76 4.5E-15 T 12-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal YPK_0921 47d3f9e6b1da54d7840e3344d20424b9 238 Gene3D G3DSA:3.40.30.10 71 230 3.4E-52 T 12-10-2018 YPK_0921 47d3f9e6b1da54d7840e3344d20424b9 238 Pfam PF13098 Thioredoxin-like domain 104 227 3.1E-29 T 12-10-2018 IPR012336 Thioredoxin-like fold YPK_0921 47d3f9e6b1da54d7840e3344d20424b9 238 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YPK_0921 47d3f9e6b1da54d7840e3344d20424b9 238 SUPERFAMILY SSF52833 88 230 1.2E-42 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_0921 47d3f9e6b1da54d7840e3344d20424b9 238 Gene3D G3DSA:3.10.450.70 22 70 5.4E-24 T 12-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 YPK_0921 47d3f9e6b1da54d7840e3344d20424b9 238 SUPERFAMILY SSF54423 22 80 1.44E-17 T 12-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 SMART SM00490 259 340 2.3E-32 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 Pfam PF00271 Helicase conserved C-terminal domain 235 339 3.7E-26 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 SMART SM00487 20 223 4.7E-58 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 450 51.088 T 12-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 Gene3D G3DSA:3.40.50.300 215 394 2.6E-49 T 12-10-2018 YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 SUPERFAMILY SSF52540 75 361 2.96E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 Gene3D G3DSA:3.40.50.300 1 211 1.9E-76 T 12-10-2018 YPK_2898 28231969e49d95f5a02fc1391fb64d98 451 Pfam PF00270 DEAD/DEAH box helicase 25 195 4.7E-50 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_1696 c8be240148e8cce40a78344b74191386 117 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 12-10-2018 IPR019808 Histidine triad, conserved site YPK_1696 c8be240148e8cce40a78344b74191386 117 Pfam PF01230 HIT domain 12 109 5.6E-30 T 12-10-2018 IPR001310 Histidine triad (HIT) protein YPK_1696 c8be240148e8cce40a78344b74191386 117 Gene3D G3DSA:3.30.428.10 1 117 1.2E-36 T 12-10-2018 IPR036265 HIT-like superfamily YPK_1696 c8be240148e8cce40a78344b74191386 117 SUPERFAMILY SSF54197 2 112 2.47E-36 T 12-10-2018 IPR036265 HIT-like superfamily YPK_1696 c8be240148e8cce40a78344b74191386 117 PRINTS PR00332 Histidine triad family signature 95 105 3.9E-19 T 12-10-2018 IPR001310 Histidine triad (HIT) protein YPK_1696 c8be240148e8cce40a78344b74191386 117 PRINTS PR00332 Histidine triad family signature 6 22 3.9E-19 T 12-10-2018 IPR001310 Histidine triad (HIT) protein YPK_1696 c8be240148e8cce40a78344b74191386 117 PRINTS PR00332 Histidine triad family signature 27 45 3.9E-19 T 12-10-2018 IPR001310 Histidine triad (HIT) protein YPK_3695 3839abe2878c9744c838162328abd489 208 PIRSF PIRSF020680 1 208 1.6E-50 T 12-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 YPK_3695 3839abe2878c9744c838162328abd489 208 SUPERFAMILY SSF159709 13 207 2.09E-54 T 12-10-2018 IPR038058 PhnH-like superfamily YPK_3695 3839abe2878c9744c838162328abd489 208 Gene3D G3DSA:3.40.50.11310 1 208 2.3E-61 T 12-10-2018 IPR038058 PhnH-like superfamily YPK_3695 3839abe2878c9744c838162328abd489 208 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 6 206 5.0E-65 T 12-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 YPK_3695 3839abe2878c9744c838162328abd489 208 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 7 204 3.5E-48 T 12-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 YPK_1553 5d95865658b256d7c245198a2f5a412e 164 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 164 1.0E-95 T 12-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU YPK_1553 5d95865658b256d7c245198a2f5a412e 164 Pfam PF03887 YfbU domain 1 164 1.3E-69 T 12-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU YPK_1553 5d95865658b256d7c245198a2f5a412e 164 SUPERFAMILY SSF116960 1 164 1.23E-69 T 12-10-2018 YPK_1553 5d95865658b256d7c245198a2f5a412e 164 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 164 38.102 T 12-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU YPK_1553 5d95865658b256d7c245198a2f5a412e 164 Gene3D G3DSA:1.10.3190.10 54 164 9.5E-40 T 12-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily YPK_1553 5d95865658b256d7c245198a2f5a412e 164 Gene3D G3DSA:1.10.287.680 1 53 5.4E-33 T 12-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily YPK_1553 5d95865658b256d7c245198a2f5a412e 164 PIRSF PIRSF006272 1 164 7.2E-75 T 12-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU YPK_4074 50bb697db991d84b9ce34b221787cdf9 367 Gene3D G3DSA:3.40.1350.30 45 189 2.8E-145 T 12-10-2018 YPK_4074 50bb697db991d84b9ce34b221787cdf9 367 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 12-10-2018 IPR030390 RNA methyltransferase TrmA, active site YPK_4074 50bb697db991d84b9ce34b221787cdf9 367 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 11 366 1.8E-196 T 12-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 YPK_4074 50bb697db991d84b9ce34b221787cdf9 367 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 42.786 T 12-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 YPK_4074 50bb697db991d84b9ce34b221787cdf9 367 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 366 1.6E-191 T 12-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 YPK_4074 50bb697db991d84b9ce34b221787cdf9 367 SUPERFAMILY SSF53335 7 365 7.71E-54 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_4074 50bb697db991d84b9ce34b221787cdf9 367 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 12-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site YPK_4074 50bb697db991d84b9ce34b221787cdf9 367 Gene3D G3DSA:3.40.50.150 14 362 2.8E-145 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Gene3D G3DSA:1.20.1640.10 516 1026 0.0 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 SUPERFAMILY SSF82866 296 497 4.97E-49 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 SUPERFAMILY SSF82866 807 1032 2.09E-44 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1043 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Gene3D G3DSA:3.30.70.1440 675 865 0.0 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 SUPERFAMILY SSF82693 38 132 8.11E-27 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Gene3D G3DSA:3.30.70.1430 38 821 0.0 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 SUPERFAMILY SSF82714 724 811 1.31E-20 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 6.1E-115 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 SUPERFAMILY SSF82693 135 330 1.74E-28 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 SUPERFAMILY SSF82693 566 670 1.41E-32 T 12-10-2018 YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 SUPERFAMILY SSF82714 182 272 2.09E-20 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3208 5a46645827723f02afe95a203ab6e5f2 1050 Gene3D G3DSA:3.30.2090.10 725 813 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_2712 ae3d7ca3da9245f7c0f7adde5edb09d8 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 4 79 8.0E-12 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_2712 ae3d7ca3da9245f7c0f7adde5edb09d8 238 Gene3D G3DSA:1.10.3720.10 2 233 3.5E-46 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2712 ae3d7ca3da9245f7c0f7adde5edb09d8 238 SUPERFAMILY SSF161098 7 216 1.44E-35 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2712 ae3d7ca3da9245f7c0f7adde5edb09d8 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 231 5.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.368 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 Pfam PF00549 CoA-ligase 262 382 4.4E-24 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 Gene3D G3DSA:3.30.470.20 1 234 2.9E-97 T 12-10-2018 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 12-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 Gene3D G3DSA:3.30.1490.20 21 104 2.9E-97 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 Pfam PF08442 ATP-grasp domain 2 203 2.9E-83 T 12-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 SUPERFAMILY SSF56059 1 238 2.65E-81 T 12-10-2018 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 Gene3D G3DSA:3.40.50.261 240 387 2.3E-55 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 384 8.6E-182 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 PIRSF PIRSF001554 1 388 2.0E-154 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_2966 302da6befff8057832dbd8bbbcc08d3a 388 SUPERFAMILY SSF52210 240 385 1.96E-52 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_2015 cdb431561e4472e678574f410cecbad7 436 Gene3D G3DSA:1.20.1250.20 10 434 4.4E-88 T 12-10-2018 YPK_2015 cdb431561e4472e678574f410cecbad7 436 SUPERFAMILY SSF103473 16 430 3.53E-89 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2015 cdb431561e4472e678574f410cecbad7 436 Pfam PF07690 Major Facilitator Superfamily 33 395 4.2E-48 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2736 02c981d94be7babfc80a4e724370469d 201 SUPERFAMILY SSF48317 1 199 5.23E-39 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPK_2736 02c981d94be7babfc80a4e724370469d 201 SMART SM00014 59 168 6.9E-19 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2736 02c981d94be7babfc80a4e724370469d 201 Gene3D G3DSA:1.20.144.10 93 189 1.1E-15 T 12-10-2018 YPK_2736 02c981d94be7babfc80a4e724370469d 201 Pfam PF01569 PAP2 superfamily 65 168 1.0E-11 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_4094 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:1.20.120.1320 52 146 2.7E-73 T 12-10-2018 YPK_4094 f544590c926fa0f10f68e391065b814d 811 SUPERFAMILY SSF55347 609 792 2.62E-47 T 12-10-2018 YPK_4094 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.30.360.10 620 790 2.1E-104 T 12-10-2018 YPK_4094 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.30.70.260 376 389 3.4E-5 T 12-10-2018 YPK_4094 f544590c926fa0f10f68e391065b814d 811 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 655 677 - T 12-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 YPK_4094 f544590c926fa0f10f68e391065b814d 811 ProSitePatterns PS00324 Aspartokinase signature. 15 23 - T 12-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_4094 f544590c926fa0f10f68e391065b814d 811 PIRSF PIRSF000727 13 811 1.1E-290 T 12-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_4094 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.40.50.720 461 807 2.1E-104 T 12-10-2018 YPK_4094 f544590c926fa0f10f68e391065b814d 811 Pfam PF00742 Homoserine dehydrogenase 609 804 2.0E-43 T 12-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 YPK_4094 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.40.1160.10 16 299 2.7E-73 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_4094 f544590c926fa0f10f68e391065b814d 811 Gene3D G3DSA:3.30.70.260 390 453 3.4E-5 T 12-10-2018 YPK_4094 f544590c926fa0f10f68e391065b814d 811 SUPERFAMILY SSF51735 458 631 9.0E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_4094 f544590c926fa0f10f68e391065b814d 811 SUPERFAMILY SSF53633 13 300 6.04E-59 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_4094 f544590c926fa0f10f68e391065b814d 811 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 466 601 2.6E-21 T 12-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 YPK_4094 f544590c926fa0f10f68e391065b814d 811 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 16 454 6.8E-63 T 12-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_4094 f544590c926fa0f10f68e391065b814d 811 Pfam PF00696 Amino acid kinase family 13 285 1.3E-42 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 Gene3D G3DSA:1.10.1390.10 511 548 2.8E-20 T 12-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 Gene3D G3DSA:3.40.50.10490 11 510 3.4E-241 T 12-10-2018 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 Pfam PF00342 Phosphoglucose isomerase 52 541 1.8E-257 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 SUPERFAMILY SSF53697 5 547 1.36E-227 T 12-10-2018 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 3.6E-55 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 3.6E-55 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 3.6E-55 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 3.6E-55 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 3.6E-55 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 3.6E-55 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 Gene3D G3DSA:3.40.50.10490 98 291 3.4E-241 T 12-10-2018 YPK_0373 7e85b9c69511f42bfd8ead03ea89bd34 548 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.913 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_1636 f290d5eacfb6173ac8d898a7cb02c114 274 Gene3D G3DSA:1.10.3720.10 1 263 5.6E-57 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1636 f290d5eacfb6173ac8d898a7cb02c114 274 SUPERFAMILY SSF161098 2 270 4.21E-57 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1636 f290d5eacfb6173ac8d898a7cb02c114 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 269 2.2E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1344 aed1f874c049fc49690624692c92a94b 687 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 681 27.235 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 YPK_1344 aed1f874c049fc49690624692c92a94b 687 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 2.1E-31 T 12-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 YPK_1344 aed1f874c049fc49690624692c92a94b 687 Gene3D G3DSA:1.20.58.310 9 109 6.2E-38 T 12-10-2018 YPK_1344 aed1f874c049fc49690624692c92a94b 687 Gene3D G3DSA:3.30.870.10 500 686 1.1E-71 T 12-10-2018 YPK_1344 aed1f874c049fc49690624692c92a94b 687 Pfam PF02503 Polyphosphate kinase middle domain 119 320 3.5E-43 T 12-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 YPK_1344 aed1f874c049fc49690624692c92a94b 687 PIRSF PIRSF015589 1 687 1.1E-241 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 YPK_1344 aed1f874c049fc49690624692c92a94b 687 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 677 1.8E-257 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 YPK_1344 aed1f874c049fc49690624692c92a94b 687 SUPERFAMILY SSF143724 107 312 2.35E-60 T 12-10-2018 YPK_1344 aed1f874c049fc49690624692c92a94b 687 Pfam PF13090 Polyphosphate kinase C-terminal domain 331 676 1.7E-143 T 12-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 YPK_1344 aed1f874c049fc49690624692c92a94b 687 Gene3D G3DSA:3.30.870.10 317 499 5.1E-74 T 12-10-2018 YPK_1344 aed1f874c049fc49690624692c92a94b 687 SUPERFAMILY SSF56024 500 682 1.3E-68 T 12-10-2018 YPK_1344 aed1f874c049fc49690624692c92a94b 687 SUPERFAMILY SSF140356 3 105 2.22E-34 T 12-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 YPK_1344 aed1f874c049fc49690624692c92a94b 687 SUPERFAMILY SSF56024 315 497 1.0E-55 T 12-10-2018 YPK_1344 aed1f874c049fc49690624692c92a94b 687 Gene3D G3DSA:3.30.1840.10 110 307 1.5E-75 T 12-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 SUPERFAMILY SSF54373 295 477 4.81E-62 T 12-10-2018 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 PIRSF PIRSF000137 1 542 3.2E-141 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 Gene3D G3DSA:1.10.1220.110 97 151 2.6E-178 T 12-10-2018 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 1 554 61.578 T 12-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 Gene3D G3DSA:3.50.50.60 2 531 2.6E-178 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2917 37685a620e648cfb37efc6e37bec9495 567 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 259 273 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 SUPERFAMILY SSF51905 1 535 1.07E-90 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2917 37685a620e648cfb37efc6e37bec9495 567 Gene3D G3DSA:3.30.410.40 152 474 2.6E-178 T 12-10-2018 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 Pfam PF00732 GMC oxidoreductase 3 300 4.2E-98 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 Gene3D G3DSA:4.10.450.10 36 199 2.6E-178 T 12-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 Pfam PF05199 GMC oxidoreductase 393 527 4.9E-42 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 YPK_2917 37685a620e648cfb37efc6e37bec9495 567 TIGRFAM TIGR01810 betA: choline dehydrogenase 4 537 3.6E-282 T 12-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 YPK_3243 74551218fb637163cb9b5703efd00a34 204 Pfam PF00510 Cytochrome c oxidase subunit III 16 202 2.0E-14 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3243 74551218fb637163cb9b5703efd00a34 204 SUPERFAMILY SSF81452 21 202 7.19E-58 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3243 74551218fb637163cb9b5703efd00a34 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 2.3E-86 T 12-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 YPK_3243 74551218fb637163cb9b5703efd00a34 204 Gene3D G3DSA:1.20.120.80 19 204 8.0E-60 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 3 660 73.162 T 12-10-2018 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 Gene3D G3DSA:2.60.40.10 2 133 9.2E-44 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 638 1.5E-269 T 12-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 SUPERFAMILY SSF51445 131 567 4.53E-122 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 SUPERFAMILY SSF51011 576 629 2.09E-5 T 12-10-2018 YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 Gene3D G3DSA:2.60.40.1180 575 660 8.0E-35 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 13 95 1.1E-17 T 12-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 Pfam PF00128 Alpha amylase, catalytic domain 186 291 1.6E-4 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 Gene3D G3DSA:3.20.20.80 134 574 5.8E-171 T 12-10-2018 YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 SUPERFAMILY SSF81296 7 144 8.68E-42 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_0148 bb2e547b4d3d69cf23254de67a9e4d4d 662 SMART SM00642 151 560 4.1E-7 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_0922 0dd9c0b35fdab27941d2015c5ec79449 577 Pfam PF02272 DHHA1 domain 322 452 1.1E-26 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 YPK_0922 0dd9c0b35fdab27941d2015c5ec79449 577 Gene3D G3DSA:3.10.310.30 328 458 1.4E-30 T 12-10-2018 YPK_0922 0dd9c0b35fdab27941d2015c5ec79449 577 Gene3D G3DSA:2.40.50.460 459 576 1.4E-7 T 12-10-2018 YPK_0922 0dd9c0b35fdab27941d2015c5ec79449 577 Gene3D G3DSA:3.90.1640.30 48 326 2.3E-89 T 12-10-2018 YPK_0922 0dd9c0b35fdab27941d2015c5ec79449 577 Pfam PF01368 DHH family 74 175 5.1E-9 T 12-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_0922 0dd9c0b35fdab27941d2015c5ec79449 577 SUPERFAMILY SSF64182 49 466 9.68E-117 T 12-10-2018 IPR038763 DHH phosphoesterase superfamily YPK_0922 0dd9c0b35fdab27941d2015c5ec79449 577 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 24 573 8.1E-160 T 12-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 Pfam PF05746 DALR anticodon binding domain 460 576 4.0E-34 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 Gene3D G3DSA:1.10.730.10 454 576 1.3E-32 T 12-10-2018 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 2.7E-21 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 SUPERFAMILY SSF55190 2 96 7.98E-22 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 Gene3D G3DSA:3.30.1360.70 1 106 5.1E-35 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 SUPERFAMILY SSF47323 454 576 2.09E-35 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 SUPERFAMILY SSF52374 108 454 8.8E-95 T 12-10-2018 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 SMART SM01016 5 87 8.0E-28 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 576 8.4E-204 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 SMART SM00836 460 576 8.7E-38 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 Pfam PF00750 tRNA synthetases class I (R) 105 446 4.2E-166 T 12-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 576 28.587 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 Gene3D G3DSA:3.40.50.620 108 453 3.3E-108 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 1.5E-25 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 303 324 1.5E-25 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 1.5E-25 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YPK_2155 21885d27d8601d2eef66b56dbbc88f94 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 1.5E-25 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 258 1.2E-54 T 12-10-2018 IPR000150 Cof family GO:0016787 YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 12-10-2018 YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 SUPERFAMILY SSF56784 1 262 2.35E-62 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 210 232 - T 12-10-2018 YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 8.3E-35 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 Gene3D G3DSA:3.30.1240.10 82 185 9.0E-55 T 12-10-2018 YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 Hamap MF_01847 HMP-PP phosphatase [cof]. 1 273 66.254 T 12-10-2018 IPR023938 HMP-PP phosphatase GO:0016818 YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 Gene3D G3DSA:3.40.50.1000 5 258 9.0E-55 T 12-10-2018 IPR023214 HAD superfamily YPK_3225 abe3780ed0177244ce15e6f151ae2227 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 258 5.8E-54 T 12-10-2018 YPK_0946 9be6d93ba0a242f1b73ed13b513ec7f9 108 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 16 103 3.1E-7 T 12-10-2018 IPR009241 Toxin HigB-like YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 6 486 1.8E-209 T 12-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 Pfam PF13396 Phospholipase_D-nuclease N-terminal 23 59 4.0E-7 T 12-10-2018 IPR027379 Cardiolipin synthase N-terminal YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 SUPERFAMILY SSF56024 67 315 3.14E-48 T 12-10-2018 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 Pfam PF13091 PLD-like domain 135 244 4.3E-12 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 Pfam PF13091 PLD-like domain 331 448 1.1E-23 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 Gene3D G3DSA:3.30.870.10 302 483 1.3E-30 T 12-10-2018 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 486 52.592 T 12-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 SMART SM00155 219 246 5.2E-4 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 SMART SM00155 399 426 7.3E-5 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 Gene3D G3DSA:3.30.870.10 112 301 1.1E-32 T 12-10-2018 YPK_2063 cc15ce0eeac520130c674ed337039f7a 486 SUPERFAMILY SSF56024 273 473 2.11E-50 T 12-10-2018 YPK_3586 5767e10f2ba82ad21b3ee567c7f41a8b 174 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 23 93 1.6E-12 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPK_3586 5767e10f2ba82ad21b3ee567c7f41a8b 174 Gene3D G3DSA:3.10.50.40 32 160 8.1E-39 T 12-10-2018 YPK_3586 5767e10f2ba82ad21b3ee567c7f41a8b 174 Gene3D G3DSA:2.40.10.330 91 147 8.1E-39 T 12-10-2018 YPK_3586 5767e10f2ba82ad21b3ee567c7f41a8b 174 SUPERFAMILY SSF54534 23 161 2.16E-34 T 12-10-2018 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 SMART SM00958 228 358 8.9E-85 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 SMART SM00957 6 402 0.0 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 101 115 1.4E-73 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 63 87 1.4E-73 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 170 190 1.4E-73 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 339 361 1.4E-73 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 376 393 1.4E-73 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 117 127 1.4E-73 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 PRINTS PR00906 SecA protein signature 413 426 1.4E-73 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 SUPERFAMILY SSF52540 416 618 1.06E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Gene3D G3DSA:3.40.50.300 417 620 4.3E-87 T 12-10-2018 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.941 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 SUPERFAMILY SSF81767 227 368 6.8E-45 T 12-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Pfam PF01043 SecA preprotein cross-linking domain 232 358 3.2E-39 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Pfam PF02810 SEC-C motif 884 902 1.1E-10 T 12-10-2018 IPR004027 SEC-C motif YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Pfam PF07517 SecA DEAD-like domain 7 402 1.0E-131 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Gene3D G3DSA:3.40.50.300 22 415 5.4E-176 T 12-10-2018 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 SUPERFAMILY SSF52540 5 415 1.93E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Pfam PF07516 SecA Wing and Scaffold domain 617 830 5.0E-69 T 12-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 ProSitePatterns PS01312 SecA family signature. 500 515 - T 12-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Gene3D G3DSA:1.10.3060.10 621 833 4.5E-82 T 12-10-2018 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 Gene3D G3DSA:3.90.1440.10 229 368 5.4E-176 T 12-10-2018 YPK_3509 4bee0ef5ead1da96da306619c182f5dc 904 SUPERFAMILY SSF81886 620 892 3.66E-84 T 12-10-2018 IPR036266 SecA, Wing/Scaffold superfamily YPK_3159 38c4ac7b906e3d62ffe833a74c5cbdf4 190 Gene3D G3DSA:3.40.50.1110 6 189 6.6E-72 T 12-10-2018 IPR036514 SGNH hydrolase superfamily YPK_3159 38c4ac7b906e3d62ffe833a74c5cbdf4 190 SUPERFAMILY SSF52266 8 185 6.48E-50 T 12-10-2018 YPK_3159 38c4ac7b906e3d62ffe833a74c5cbdf4 190 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 9 19 - T 12-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 YPK_3159 38c4ac7b906e3d62ffe833a74c5cbdf4 190 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 12 169 2.0E-24 T 12-10-2018 IPR013830 SGNH hydrolase-type esterase domain YPK_3799 287688b229177e55911b4c10816a0f22 101 SUPERFAMILY SSF50182 7 69 5.02E-24 T 12-10-2018 IPR010920 LSM domain superfamily YPK_3799 287688b229177e55911b4c10816a0f22 101 Pfam PF17209 Hfq protein 7 69 7.8E-31 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 YPK_3799 287688b229177e55911b4c10816a0f22 101 Gene3D G3DSA:2.30.30.100 1 72 1.5E-34 T 12-10-2018 YPK_3799 287688b229177e55911b4c10816a0f22 101 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.8E-29 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 YPK_3799 287688b229177e55911b4c10816a0f22 101 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.244 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 4.6E-229 T 12-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 Gene3D G3DSA:3.90.1170.30 337 433 5.1E-34 T 12-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 SUPERFAMILY SSF52418 75 334 4.32E-87 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 Gene3D G3DSA:1.20.970.10 7 195 5.3E-129 T 12-10-2018 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 47.278 T 12-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 309 3.8E-50 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 SUPERFAMILY SSF54680 337 439 5.89E-34 T 12-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 SMART SM00941 350 424 4.3E-34 T 12-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 6.3E-166 T 12-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 351 423 1.9E-25 T 12-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 8.1E-19 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 Gene3D G3DSA:3.40.1030.10 70 322 5.3E-129 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 12-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 SUPERFAMILY SSF47648 3 70 2.35E-21 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3626 cec115648c698b33e05ce7ad3a092e7e 440 PIRSF PIRSF000478 1 439 1.4E-152 T 12-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 SUPERFAMILY SSF82866 296 497 6.28E-49 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Gene3D G3DSA:1.20.1640.10 516 1024 0.0 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 SUPERFAMILY SSF82714 182 272 2.62E-23 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1033 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Gene3D G3DSA:3.30.70.1440 675 864 0.0 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 SUPERFAMILY SSF82693 566 672 3.87E-27 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 SUPERFAMILY SSF82693 136 330 1.78E-25 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Gene3D G3DSA:3.30.70.1430 38 820 0.0 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 SUPERFAMILY SSF82866 807 1031 1.83E-46 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 SUPERFAMILY SSF82714 723 810 1.57E-22 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.9E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 SUPERFAMILY SSF82693 39 131 2.35E-27 T 12-10-2018 YPK_1382 12f254d7b52e8c22143c34275e90ee0a 1043 Gene3D G3DSA:3.30.2090.10 724 812 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3513 a732df4bef33207a740f6e7c04080b78 383 SUPERFAMILY SSF55307 203 319 2.98E-42 T 12-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 337 1.1E-141 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 SMART SM00865 206 324 8.3E-56 T 12-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 PRINTS PR00423 Cell division protein FtsZ signature 188 210 1.4E-51 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 PRINTS PR00423 Cell division protein FtsZ signature 97 117 1.4E-51 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 PRINTS PR00423 Cell division protein FtsZ signature 211 232 1.4E-51 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 PRINTS PR00423 Cell division protein FtsZ signature 125 146 1.4E-51 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 343 38.05 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 SMART SM00864 12 204 6.1E-112 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 2.0E-41 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 SUPERFAMILY SSF52490 12 207 1.44E-69 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 Pfam PF12327 FtsZ family, C-terminal domain 221 315 5.7E-37 T 12-10-2018 IPR024757 Cell division protein FtsZ, C-terminal YPK_3513 a732df4bef33207a740f6e7c04080b78 383 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 YPK_3513 a732df4bef33207a740f6e7c04080b78 383 Gene3D G3DSA:3.40.50.1440 9 316 1.9E-116 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 2.1E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 Gene3D G3DSA:3.40.1410.10 84 241 1.6E-37 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 SMART SM00866 96 236 1.0E-28 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 SUPERFAMILY SSF64288 63 240 2.36E-37 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 Pfam PF07702 UTRA domain 96 235 5.3E-30 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 Gene3D G3DSA:1.10.10.10 10 75 1.5E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 SMART SM00345 17 75 4.1E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 SUPERFAMILY SSF46785 8 84 2.45E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 7 241 2.9E-86 T 12-10-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_3693 bb38a4d29fdcc8c76cb3b8329d5cf71b 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 Gene3D G3DSA:1.20.1560.10 135 449 1.1E-71 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 44 700 2.4E-232 T 12-10-2018 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 SMART SM00382 489 691 1.7E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 SUPERFAMILY SSF90123 135 452 2.88E-66 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 Gene3D G3DSA:3.40.50.300 459 713 3.7E-86 T 12-10-2018 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 Gene3D G3DSA:3.90.70.10 6 134 1.4E-11 T 12-10-2018 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 ProSitePatterns PS00211 ABC transporters family signature. 601 615 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 Pfam PF00005 ABC transporter 480 629 1.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 Pfam PF00664 ABC transporter transmembrane region 151 418 5.7E-51 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_2004 9bf841f094b73a87ea15cd85b7077990 715 SUPERFAMILY SSF52540 453 699 2.5E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3726 501383f999637018710f52eac7325c7e 705 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 320 4.8E-26 T 12-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YPK_3726 501383f999637018710f52eac7325c7e 705 SUPERFAMILY SSF54211 293 488 4.66E-47 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3726 501383f999637018710f52eac7325c7e 705 SMART SM00322 552 617 3.3E-12 T 12-10-2018 IPR004087 K Homology domain GO:0003676 YPK_3726 501383f999637018710f52eac7325c7e 705 PIRSF PIRSF005499 2 705 4.6E-300 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YPK_3726 501383f999637018710f52eac7325c7e 705 SUPERFAMILY SSF55666 450 548 6.59E-28 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3726 501383f999637018710f52eac7325c7e 705 SUPERFAMILY SSF54211 5 144 7.59E-49 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3726 501383f999637018710f52eac7325c7e 705 Pfam PF00013 KH domain 556 614 5.6E-9 T 12-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 YPK_3726 501383f999637018710f52eac7325c7e 705 SUPERFAMILY SSF55666 145 235 2.24E-30 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3726 501383f999637018710f52eac7325c7e 705 Gene3D G3DSA:3.30.230.70 236 549 6.8E-115 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3726 501383f999637018710f52eac7325c7e 705 Pfam PF00575 S1 RNA binding domain 619 690 1.9E-21 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_3726 501383f999637018710f52eac7325c7e 705 Gene3D G3DSA:3.30.230.70 4 235 3.5E-78 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3726 501383f999637018710f52eac7325c7e 705 SMART SM00316 620 690 6.6E-26 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_3726 501383f999637018710f52eac7325c7e 705 Pfam PF01138 3' exoribonuclease family, domain 1 324 456 1.2E-21 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3726 501383f999637018710f52eac7325c7e 705 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 3.0E-18 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3726 501383f999637018710f52eac7325c7e 705 SUPERFAMILY SSF50249 620 695 1.04E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3726 501383f999637018710f52eac7325c7e 705 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 0.0 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YPK_3726 501383f999637018710f52eac7325c7e 705 SUPERFAMILY SSF54791 554 639 1.25E-22 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 YPK_3726 501383f999637018710f52eac7325c7e 705 SUPERFAMILY SSF46915 238 320 4.18E-19 T 12-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YPK_3726 501383f999637018710f52eac7325c7e 705 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 8.4E-14 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3726 501383f999637018710f52eac7325c7e 705 Pfam PF03725 3' exoribonuclease family, domain 2 460 527 1.4E-5 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3726 501383f999637018710f52eac7325c7e 705 Gene3D G3DSA:3.30.1370.10 550 621 5.7E-19 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 YPK_3726 501383f999637018710f52eac7325c7e 705 Gene3D G3DSA:2.40.50.140 622 693 1.5E-28 T 12-10-2018 YPK_3726 501383f999637018710f52eac7325c7e 705 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 693 30.374 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 YPK_0481 22c740431a3ff1af5bc9d98f3a44607b 270 SUPERFAMILY SSF46785 2 66 5.99E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0481 22c740431a3ff1af5bc9d98f3a44607b 270 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 44 2.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0481 22c740431a3ff1af5bc9d98f3a44607b 270 Gene3D G3DSA:1.10.10.10 1 75 1.0E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2851 4c15ee05ff015a65a21f1ceb0b17f6bb 169 PIRSF PIRSF006865 1 169 6.1E-67 T 12-10-2018 IPR005658 Proteinase inhibitor I11, ecotin YPK_2851 4c15ee05ff015a65a21f1ceb0b17f6bb 169 Hamap MF_00706 Ecotin [eco]. 4 169 41.115 T 12-10-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria YPK_2851 4c15ee05ff015a65a21f1ceb0b17f6bb 169 Pfam PF03974 Ecotin 36 159 2.0E-49 T 12-10-2018 IPR005658 Proteinase inhibitor I11, ecotin YPK_2851 4c15ee05ff015a65a21f1ceb0b17f6bb 169 SUPERFAMILY SSF49772 32 167 4.45E-53 T 12-10-2018 IPR036198 Ecotin superfamily YPK_2851 4c15ee05ff015a65a21f1ceb0b17f6bb 169 Gene3D G3DSA:2.60.40.550 22 169 4.6E-65 T 12-10-2018 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 Gene3D G3DSA:1.10.580.10 56 409 1.8E-151 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 PIRSF PIRSF001369 37 426 1.5E-174 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 Gene3D G3DSA:1.10.230.10 267 375 1.8E-151 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 Pfam PF00285 Citrate synthase, C-terminal domain 45 409 1.5E-132 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 Gene3D G3DSA:2.20.28.60 1 49 1.2E-20 T 12-10-2018 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 SUPERFAMILY SSF48256 3 421 2.09E-168 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 ProSitePatterns PS00480 Citrate synthase signature. 302 314 - T 12-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 13 420 1.2E-235 T 12-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 378 392 2.0E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 218 233 2.0E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 295 315 2.0E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 240 268 2.0E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 358 374 2.0E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 YPK_2973 af25d3b5e81b7bad8e7fdcf0044cd578 426 PRINTS PR00143 Citrate synthase signature 164 177 2.0E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 YPK_2303 e6e507a77e82516c91c796c95e14ede0 971 Pfam PF10145 Phage-related minor tail protein 242 435 8.7E-45 T 12-10-2018 IPR010090 Phage tail tape measure protein YPK_2303 e6e507a77e82516c91c796c95e14ede0 971 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 200 544 1.2E-86 T 12-10-2018 IPR010090 Phage tail tape measure protein YPK_1265 529623d23d9d125723799d1f28385b5a 417 SUPERFAMILY SSF53383 6 416 3.99E-180 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1265 529623d23d9d125723799d1f28385b5a 417 Gene3D G3DSA:3.40.640.10 37 289 1.5E-182 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1265 529623d23d9d125723799d1f28385b5a 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.153 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 YPK_1265 529623d23d9d125723799d1f28385b5a 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 12-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 YPK_1265 529623d23d9d125723799d1f28385b5a 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 1.9E-184 T 12-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 YPK_1265 529623d23d9d125723799d1f28385b5a 417 Gene3D G3DSA:3.90.1150.10 10 395 1.5E-182 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1265 529623d23d9d125723799d1f28385b5a 417 PIRSF PIRSF000412 1 417 1.6E-168 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 Gene3D G3DSA:3.40.50.2300 160 289 3.1E-69 T 12-10-2018 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 Pfam PF13377 Periplasmic binding protein-like domain 169 329 3.4E-33 T 12-10-2018 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 Gene3D G3DSA:1.10.260.40 3 58 6.6E-22 T 12-10-2018 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 12-10-2018 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 6.3E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 6.3E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 SUPERFAMILY SSF53822 61 331 3.26E-79 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 SUPERFAMILY SSF47413 2 56 5.23E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 Gene3D G3DSA:3.40.50.2300 63 304 3.1E-69 T 12-10-2018 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 SMART SM00354 1 71 1.1E-27 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1965 56c015148e9b6013aa89e6db15c8f610 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.9E-21 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0443 55c03d32d59d683bf52175891209b8c6 70 Gene3D G3DSA:2.40.50.140 2 69 6.4E-29 T 12-10-2018 YPK_0443 55c03d32d59d683bf52175891209b8c6 70 PIRSF PIRSF002599 1 70 1.1E-23 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_0443 55c03d32d59d683bf52175891209b8c6 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 12-10-2018 IPR019844 Cold-shock conserved site YPK_0443 55c03d32d59d683bf52175891209b8c6 70 PRINTS PR00050 Cold shock protein signature 43 61 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0443 55c03d32d59d683bf52175891209b8c6 70 PRINTS PR00050 Cold shock protein signature 7 22 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0443 55c03d32d59d683bf52175891209b8c6 70 PRINTS PR00050 Cold shock protein signature 28 37 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0443 55c03d32d59d683bf52175891209b8c6 70 SMART SM00357 6 70 1.6E-30 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_0443 55c03d32d59d683bf52175891209b8c6 70 SUPERFAMILY SSF50249 3 69 1.12E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0443 55c03d32d59d683bf52175891209b8c6 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 4.0E-32 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 32 140 6.3E-51 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 SUPERFAMILY SSF57716 111 149 5.7E-10 T 12-10-2018 YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 SUPERFAMILY SSF109635 9 110 8.24E-37 T 12-10-2018 IPR037187 DksA, N-terminal domain superfamily YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 Gene3D G3DSA:1.20.120.910 20 150 1.7E-35 T 12-10-2018 YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 114 138 - T 12-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 PRINTS PR00618 DksA/TraR zinc finger signature 126 138 9.9E-5 T 12-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 PRINTS PR00618 DksA/TraR zinc finger signature 114 125 9.9E-5 T 12-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 28 150 29.578 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 YPK_3468 e48e7ebf611fae039bc107fa1fd6563d 151 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 111 143 3.1E-10 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 Pfam PF05746 DALR anticodon binding domain 582 679 4.1E-8 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.636 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 SUPERFAMILY SSF109604 339 536 1.67E-15 T 12-10-2018 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 2.7E-212 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 7.8E-37 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 7.8E-37 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 7.8E-37 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 7.8E-37 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 7.8E-37 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0023 1dec0e821a30cc058442d229c91793bc 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_1106 ddf62b6761ee2c9bd87e11f518735645 251 PIRSF PIRSF005457 1 251 6.3E-89 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 YPK_1106 ddf62b6761ee2c9bd87e11f518735645 251 Pfam PF00753 Metallo-beta-lactamase superfamily 13 165 6.1E-18 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_1106 ddf62b6761ee2c9bd87e11f518735645 251 SUPERFAMILY SSF56281 1 251 2.1E-67 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_1106 ddf62b6761ee2c9bd87e11f518735645 251 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 251 2.6E-23 T 12-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 YPK_1106 ddf62b6761ee2c9bd87e11f518735645 251 SMART SM00849 11 165 7.6E-39 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_1106 ddf62b6761ee2c9bd87e11f518735645 251 Gene3D G3DSA:3.60.15.10 1 251 5.2E-94 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_1106 ddf62b6761ee2c9bd87e11f518735645 251 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 251 45.377 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 YPK_1106 ddf62b6761ee2c9bd87e11f518735645 251 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 251 9.3E-104 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 YPK_1733 8be59577c7436779124a35e753f33fa4 149 SUPERFAMILY SSF46785 1 61 5.96E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1733 8be59577c7436779124a35e753f33fa4 149 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 8.8E-13 T 12-10-2018 YPK_1733 8be59577c7436779124a35e753f33fa4 149 Gene3D G3DSA:1.10.10.10 1 50 1.9E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1733 8be59577c7436779124a35e753f33fa4 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.1E-11 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_1733 8be59577c7436779124a35e753f33fa4 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.1E-11 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_1733 8be59577c7436779124a35e753f33fa4 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.1E-11 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_1733 8be59577c7436779124a35e753f33fa4 149 SMART SM00344 1 107 2.1E-25 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 YPK_1733 8be59577c7436779124a35e753f33fa4 149 SUPERFAMILY SSF54909 62 136 8.4E-14 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_1733 8be59577c7436779124a35e753f33fa4 149 Pfam PF01037 Lrp/AsnC ligand binding domain 67 131 1.6E-10 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPK_1733 8be59577c7436779124a35e753f33fa4 149 Gene3D G3DSA:3.30.70.920 51 136 1.4E-16 T 12-10-2018 YPK_0066 13acdedf4881d99977e5b30b9cbb1ee0 88 Gene3D G3DSA:1.10.10.60 9 76 3.4E-6 T 12-10-2018 YPK_0066 13acdedf4881d99977e5b30b9cbb1ee0 88 SUPERFAMILY SSF46689 1 73 3.58E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0066 13acdedf4881d99977e5b30b9cbb1ee0 88 Pfam PF01527 Transposase 2 71 2.0E-23 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YPK_3092 9ce6c349ac8143a2c799ab755dbae094 472 SUPERFAMILY SSF88874 148 327 7.32E-11 T 12-10-2018 YPK_1478 79fddd6b1184f2c9fe51083108bfece2 202 Pfam PF00419 Fimbrial protein 48 201 2.3E-12 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_1478 79fddd6b1184f2c9fe51083108bfece2 202 SUPERFAMILY SSF49401 54 202 4.28E-20 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_1478 79fddd6b1184f2c9fe51083108bfece2 202 Gene3D G3DSA:2.60.40.1090 45 201 2.6E-22 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_2553 c6b3b6a9c828649bcdc889729b416134 370 Hamap MF_02040 Iron-sulfur cluster carrier protein. 102 351 36.658 T 12-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein YPK_2553 c6b3b6a9c828649bcdc889729b416134 370 SUPERFAMILY SSF117916 14 85 8.83E-5 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily YPK_2553 c6b3b6a9c828649bcdc889729b416134 370 ProSitePatterns PS01215 Mrp family signature. 214 230 - T 12-10-2018 IPR000808 Mrp, conserved site GO:0005524 YPK_2553 c6b3b6a9c828649bcdc889729b416134 370 Gene3D G3DSA:3.40.50.300 96 349 3.7E-79 T 12-10-2018 YPK_2553 c6b3b6a9c828649bcdc889729b416134 370 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 350 3.9E-99 T 12-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 YPK_2553 c6b3b6a9c828649bcdc889729b416134 370 SUPERFAMILY SSF52540 109 356 3.35E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 SUPERFAMILY SSF74653 174 241 1.29E-18 T 12-10-2018 YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 179 249 3.7E-18 T 12-10-2018 IPR006260 TonB/TolA, C-terminal YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 178 239 6.0E-16 T 12-10-2018 IPR037682 TonB, C-terminal GO:0055085 YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 Gene3D G3DSA:3.30.2420.10 168 256 2.1E-28 T 12-10-2018 YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 PRINTS PR01374 Gram-negative bacterial tonB protein signature 194 212 8.1E-30 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 PRINTS PR01374 Gram-negative bacterial tonB protein signature 109 119 8.1E-30 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 PRINTS PR01374 Gram-negative bacterial tonB protein signature 173 194 8.1E-30 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 PRINTS PR01374 Gram-negative bacterial tonB protein signature 213 230 8.1E-30 T 12-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 YPK_2055 7f6b7338dba7193e2b6dbfaf915c8a6c 256 Pfam PF16031 TonB N-terminal region 36 175 4.7E-26 T 12-10-2018 YPK_2212 6227687f7f25c129431e774932f27409 384 SUPERFAMILY SSF53448 68 288 7.54E-16 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2212 6227687f7f25c129431e774932f27409 384 Pfam PF13506 Glycosyl transferase family 21 97 265 1.2E-38 T 12-10-2018 IPR025993 Ceramide glucosyltransferase GO:0016757 KEGG: 00600+2.4.1.80|MetaCyc: PWY-5129|MetaCyc: PWY-7836|MetaCyc: PWY-7838|MetaCyc: PWY-7839|MetaCyc: PWY-7841|Reactome: R-HSA-1660662 YPK_2212 6227687f7f25c129431e774932f27409 384 Gene3D G3DSA:3.90.550.10 50 244 1.6E-5 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Pfam PF00696 Amino acid kinase family 2 284 1.4E-46 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 12-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Gene3D G3DSA:3.30.360.10 625 795 3.7E-121 T 12-10-2018 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Pfam PF00742 Homoserine dehydrogenase 614 810 2.2E-50 T 12-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Pfam PF13840 ACT domain 395 453 6.7E-8 T 12-10-2018 IPR027795 CASTOR, ACT domain YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 1.9E-143 T 12-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 SUPERFAMILY SSF55021 303 381 5.95E-23 T 12-10-2018 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 PIRSF PIRSF000727 1 817 0.0 T 12-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Gene3D G3DSA:3.30.2130.10 301 464 1.9E-48 T 12-10-2018 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 SUPERFAMILY SSF55021 383 476 3.49E-22 T 12-10-2018 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 SUPERFAMILY SSF55347 614 797 4.32E-53 T 12-10-2018 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Gene3D G3DSA:3.40.1160.10 1 297 9.6E-85 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Pfam PF01842 ACT domain 324 375 4.1E-8 T 12-10-2018 IPR002912 ACT domain YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 SUPERFAMILY SSF51735 464 636 1.89E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 12-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 605 4.0E-28 T 12-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 Gene3D G3DSA:3.40.50.720 466 811 3.7E-121 T 12-10-2018 YPK_3604 dcc46edf3fd341b2d076bcbaa0dfed9b 819 SUPERFAMILY SSF53633 1 297 1.06E-72 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 Gene3D G3DSA:1.20.58.1510 287 492 1.4E-109 T 12-10-2018 YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 Pfam PF07728 AAA domain (dynein-related subfamily) 41 171 7.6E-24 T 12-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 SMART SM00382 38 187 3.1E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 Pfam PF12592 Protein of unknown function (DUF3763) 444 496 4.2E-19 T 12-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 Hamap MF_01625 ATPase RavA [ravA]. 1 507 59.887 T 12-10-2018 IPR023671 ATPase RavA GO:0005737|GO:0016887 YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 Gene3D G3DSA:1.10.8.300 222 285 1.1E-27 T 12-10-2018 YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 Gene3D G3DSA:3.40.50.300 1 221 1.2E-61 T 12-10-2018 YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 Gene3D G3DSA:2.40.128.430 331 441 1.4E-109 T 12-10-2018 YPK_4212 aeaac8dd9371cc424229e833af0a399e 512 SUPERFAMILY SSF52540 21 287 8.75E-20 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1605 176d6fb239514b1d00c74d13c2c92acc 295 Pfam PF00892 EamA-like transporter family 150 279 7.9E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1605 176d6fb239514b1d00c74d13c2c92acc 295 SUPERFAMILY SSF103481 187 281 1.07E-6 T 12-10-2018 YPK_0270 6b0568feadd82f9ded8746f8dcb995e2 266 Gene3D G3DSA:1.10.287.460 26 139 7.8E-31 T 12-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 YPK_0270 6b0568feadd82f9ded8746f8dcb995e2 266 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 243 3.8E-29 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPK_0270 6b0568feadd82f9ded8746f8dcb995e2 266 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 30 149 9.9E-38 T 12-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 YPK_0270 6b0568feadd82f9ded8746f8dcb995e2 266 Gene3D G3DSA:3.10.50.40 140 257 1.1E-42 T 12-10-2018 YPK_0270 6b0568feadd82f9ded8746f8dcb995e2 266 SUPERFAMILY SSF54534 40 246 2.16E-64 T 12-10-2018 YPK_1210 eed58cdcf69db672a1433a5f9d267639 209 SUPERFAMILY SSF47413 1 70 3.33E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1210 eed58cdcf69db672a1433a5f9d267639 209 Pfam PF01381 Helix-turn-helix 8 63 1.5E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1210 eed58cdcf69db672a1433a5f9d267639 209 SUPERFAMILY SSF51306 79 200 1.57E-23 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily YPK_1210 eed58cdcf69db672a1433a5f9d267639 209 Gene3D G3DSA:1.10.260.40 1 69 1.6E-17 T 12-10-2018 YPK_1210 eed58cdcf69db672a1433a5f9d267639 209 SMART SM00530 7 63 7.0E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1210 eed58cdcf69db672a1433a5f9d267639 209 Gene3D G3DSA:2.10.109.10 77 208 7.4E-40 T 12-10-2018 YPK_1210 eed58cdcf69db672a1433a5f9d267639 209 Pfam PF00717 Peptidase S24-like 122 187 2.3E-14 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 Pfam PF03486 HI0933-like protein 66 454 9.5E-157 T 12-10-2018 YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 Gene3D G3DSA:3.50.50.60 69 450 1.4E-127 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 67 89 5.4E-8 T 12-10-2018 YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 217 226 5.4E-8 T 12-10-2018 YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 431 5.4E-8 T 12-10-2018 YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 68 454 1.7E-128 T 12-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 SUPERFAMILY SSF51905 65 457 6.04E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 Gene3D G3DSA:2.40.30.10 250 401 1.4E-127 T 12-10-2018 YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 SUPERFAMILY SSF160996 252 400 4.71E-43 T 12-10-2018 YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 409 431 7.5E-5 T 12-10-2018 YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 68 87 7.5E-5 T 12-10-2018 YPK_0123 c9c60bc32f1fa4520dd9015aeaba4fd0 460 Gene3D G3DSA:1.10.8.260 324 384 1.4E-127 T 12-10-2018 IPR023166 HI0933-like insert domain superfamily YPK_2613 6ba3fcce45a676dbac875e038805e275 248 Gene3D G3DSA:3.40.50.720 1 248 1.5E-75 T 12-10-2018 YPK_2613 6ba3fcce45a676dbac875e038805e275 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 246 5.2E-62 T 12-10-2018 YPK_2613 6ba3fcce45a676dbac875e038805e275 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.8E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.8E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.8E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2613 6ba3fcce45a676dbac875e038805e275 248 SUPERFAMILY SSF51735 2 247 3.04E-74 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.9E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.9E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.9E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.9E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 3.9E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2613 6ba3fcce45a676dbac875e038805e275 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 3.9E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 8.3E-32 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 8.3E-32 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 8.3E-32 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 8.3E-32 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 8.3E-32 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 333 83.362 T 12-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 Gene3D G3DSA:3.40.50.1370 150 319 1.8E-138 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 330 5.0E-54 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 5.4E-47 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 332 1.3E-134 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 SUPERFAMILY SSF53671 1 333 8.51E-100 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 Gene3D G3DSA:3.40.50.1370 6 329 1.8E-138 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 6.8E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 6.8E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 6.8E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_3684 714858579ac6c4870edd94d78b8f37e4 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 6.8E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 6 73 5.9E-24 T 12-10-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 Gene3D G3DSA:3.30.930.10 65 270 6.3E-75 T 12-10-2018 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 Gene3D G3DSA:2.30.30.100 271 313 9.1E-24 T 12-10-2018 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 SUPERFAMILY SSF50037 271 317 6.87E-12 T 12-10-2018 IPR008988 Transcriptional repressor, C-terminal YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 Gene3D G3DSA:1.10.10.10 1 64 2.6E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 SUPERFAMILY SSF46785 8 60 1.61E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 1.6E-24 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 32.823 T 12-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 Pfam PF02237 Biotin protein ligase C terminal domain 272 317 1.3E-13 T 12-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 80 317 7.8E-79 T 12-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 SUPERFAMILY SSF55681 71 268 3.23E-59 T 12-10-2018 YPK_0327 4f8e2957bedac85fc876cee3507fac49 319 Pfam PF08279 HTH domain 14 58 9.6E-10 T 12-10-2018 IPR013196 Helix-turn-helix, type 11 YPK_0355 a7b5fb58541b856da49c10a7494549cf 217 Pfam PF07356 Protein of unknown function (DUF1481) 28 213 4.0E-76 T 12-10-2018 IPR010858 Protein of unknown function DUF1481 YPK_0355 a7b5fb58541b856da49c10a7494549cf 217 PIRSF PIRSF006993 1 217 1.1E-110 T 12-10-2018 IPR016500 Uncharacterised conserved protein UCP006993 YPK_1364 9294d831c1f13b93454f6745bfa532b8 237 SUPERFAMILY SSF56104 2 232 4.58E-75 T 12-10-2018 YPK_1364 9294d831c1f13b93454f6745bfa532b8 237 Gene3D G3DSA:3.30.470.20 85 220 4.5E-90 T 12-10-2018 YPK_1364 9294d831c1f13b93454f6745bfa532b8 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_1364 9294d831c1f13b93454f6745bfa532b8 237 Gene3D G3DSA:3.30.200.20 7 231 4.5E-90 T 12-10-2018 YPK_1364 9294d831c1f13b93454f6745bfa532b8 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 234 6.6E-79 T 12-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 YPK_1364 9294d831c1f13b93454f6745bfa532b8 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 28.6 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_1364 9294d831c1f13b93454f6745bfa532b8 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_1364 9294d831c1f13b93454f6745bfa532b8 237 Pfam PF01259 SAICAR synthetase 7 231 7.1E-58 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_1903 aa2056c8688d31370fc0f2575a559f06 167 Gene3D G3DSA:3.40.30.10 1 167 2.1E-49 T 12-10-2018 YPK_1903 aa2056c8688d31370fc0f2575a559f06 167 SUPERFAMILY SSF52833 4 164 1.86E-44 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_1903 aa2056c8688d31370fc0f2575a559f06 167 Hamap MF_00269 Thiol peroxidase [tpx]. 4 167 40.468 T 12-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 YPK_1903 aa2056c8688d31370fc0f2575a559f06 167 Pfam PF08534 Redoxin 21 163 2.9E-29 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 YPK_1903 aa2056c8688d31370fc0f2575a559f06 167 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 12-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 YPK_3629 56a7ee1dbaa20137821060f8ceba3c62 269 SUPERFAMILY SSF51556 11 265 6.23E-76 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_3629 56a7ee1dbaa20137821060f8ceba3c62 269 Pfam PF01026 TatD related DNase 12 263 2.4E-65 T 12-10-2018 IPR001130 TatD family GO:0016788 YPK_3629 56a7ee1dbaa20137821060f8ceba3c62 269 Gene3D G3DSA:3.20.20.140 8 265 2.8E-85 T 12-10-2018 YPK_3629 56a7ee1dbaa20137821060f8ceba3c62 269 PIRSF PIRSF005902 2 266 2.8E-67 T 12-10-2018 IPR001130 TatD family GO:0016788 YPK_3629 56a7ee1dbaa20137821060f8ceba3c62 269 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 11 19 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YPK_2837 c9c99d209f7bec9a2c1b7638f9cf5378 153 Gene3D G3DSA:3.10.450.50 9 153 1.7E-72 T 12-10-2018 YPK_2837 c9c99d209f7bec9a2c1b7638f9cf5378 153 Pfam PF07080 Protein of unknown function (DUF1348) 6 135 1.9E-63 T 12-10-2018 IPR009783 Protein of unknown function DUF1348 YPK_2837 c9c99d209f7bec9a2c1b7638f9cf5378 153 SUPERFAMILY SSF54427 2 153 2.29E-75 T 12-10-2018 IPR032710 NTF2-like domain superfamily YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 SMART SM00487 265 459 5.3E-30 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 SUPERFAMILY SSF50249 9 176 4.97E-43 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 SUPERFAMILY SSF52540 292 653 5.91E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 Gene3D G3DSA:3.40.50.300 208 450 1.2E-81 T 12-10-2018 YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 Pfam PF00270 DEAD/DEAH box helicase 271 431 6.8E-18 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 Pfam PF00271 Helicase conserved C-terminal domain 480 588 1.4E-16 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 Pfam PF17191 RecG wedge domain 14 172 5.5E-22 T 12-10-2018 IPR033454 RecG, wedge domain YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 Gene3D G3DSA:3.40.50.300 457 630 3.8E-50 T 12-10-2018 YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 Gene3D G3DSA:2.40.50.140 47 141 6.4E-14 T 12-10-2018 YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 664 4.2E-244 T 12-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 SMART SM00490 505 589 1.5E-21 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_4180 8e574f222ac27b6b76bb32cb52a595e8 693 SUPERFAMILY SSF52540 208 453 2.13E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1408 bd6b4657198711e60e3dc24f8841f69d 345 Gene3D G3DSA:3.40.190.10 127 338 4.6E-121 T 12-10-2018 YPK_1408 bd6b4657198711e60e3dc24f8841f69d 345 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 27 339 8.3E-159 T 12-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 YPK_1408 bd6b4657198711e60e3dc24f8841f69d 345 Gene3D G3DSA:3.40.190.10 39 308 4.6E-121 T 12-10-2018 YPK_1408 bd6b4657198711e60e3dc24f8841f69d 345 Pfam PF13531 Bacterial extracellular solute-binding protein 48 293 2.7E-41 T 12-10-2018 YPK_1408 bd6b4657198711e60e3dc24f8841f69d 345 SUPERFAMILY SSF53850 32 339 1.41E-78 T 12-10-2018 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 1440 1534 2.49E-20 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 1037 1115 58.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 1340 1418 75.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 1239 1317 55.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 922 1014 48.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 734 812 49.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 619 713 200.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 1604 1721 24.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 1441 1519 46.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00409 1124 1216 36.0 T 12-10-2018 IPR003599 Immunoglobulin subtype YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 1238 1332 9.94E-21 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 733 827 6.28E-21 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 1339 1433 7.85E-21 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 1640 1734 1.6E-20 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 1438 1535 1.5E-21 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 1539 1636 2.6E-22 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 933 1030 3.4E-22 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 731 828 3.4E-22 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 630 727 1.6E-22 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 1135 1232 8.4E-22 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 832 929 4.2E-21 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 529 626 6.0E-20 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 1337 1434 1.9E-22 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 1236 1333 2.2E-21 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 1034 1131 1.3E-21 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 1642 1727 9.16E-20 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 PRINTS PR01369 Intimin signature 273 288 2.7E-12 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 PRINTS PR01369 Intimin signature 456 468 2.7E-12 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 PRINTS PR01369 Intimin signature 369 388 2.7E-12 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 PRINTS PR01369 Intimin signature 301 320 2.7E-12 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 1543 1636 2.3E-22 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 1038 1131 6.6E-22 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 836 929 2.2E-20 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 532 626 1.7E-19 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 1139 1232 9.6E-22 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 735 828 3.7E-22 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 1341 1434 1.4E-22 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 937 1030 5.2E-22 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 1442 1535 5.0E-21 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 1644 1736 4.1E-20 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 1741 1837 2.6E-18 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 1240 1333 8.4E-21 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF09134 Invasin, domain 3 634 727 8.6E-22 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 1137 1231 1.07E-20 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:3.10.350.10 61 135 4.3E-5 T 12-10-2018 IPR036779 LysM domain superfamily YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 1541 1635 3.4E-21 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.40.160.160 184 428 1.0E-111 T 12-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 1645 1732 1.5E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 1443 1530 2.6E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 736 823 2.1E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 534 618 0.0017 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 635 722 4.5E-7 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 1544 1631 1.7E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 1241 1328 2.6E-7 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 1140 1227 6.0E-7 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 837 924 3.0E-6 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 938 1025 2.1E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 1743 1831 0.019 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 1342 1429 1.2E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SMART SM00634 1039 1126 1.2E-7 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 834 928 6.54E-19 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 935 1029 8.63E-21 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Gene3D G3DSA:2.60.40.10 1735 1837 1.5E-17 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 531 625 2.16E-20 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 1036 1130 2.88E-20 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 632 726 2.28E-20 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 SUPERFAMILY SSF49373 1740 1827 3.92E-14 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_1315 9a0fd798e2e1da10f00e6365823c5c90 1976 Pfam PF11924 Inverse autotransporter, beta-domain 154 421 6.3E-116 T 12-10-2018 IPR024519 Inverse autotransporter, beta-domain YPK_1094 0384a9761e5e6194318c4575e0fd5ee4 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 6.2E-144 T 12-10-2018 IPR004872 Lipoprotein NlpA family YPK_1094 0384a9761e5e6194318c4575e0fd5ee4 271 SUPERFAMILY SSF53850 33 271 4.35E-83 T 12-10-2018 YPK_1094 0384a9761e5e6194318c4575e0fd5ee4 271 Gene3D G3DSA:3.40.190.10 115 221 7.2E-101 T 12-10-2018 YPK_1094 0384a9761e5e6194318c4575e0fd5ee4 271 Pfam PF03180 NLPA lipoprotein 33 271 1.0E-98 T 12-10-2018 IPR004872 Lipoprotein NlpA family YPK_1094 0384a9761e5e6194318c4575e0fd5ee4 271 PIRSF PIRSF002854 1 271 1.5E-104 T 12-10-2018 IPR004872 Lipoprotein NlpA family YPK_1094 0384a9761e5e6194318c4575e0fd5ee4 271 Gene3D G3DSA:3.40.190.10 34 265 7.2E-101 T 12-10-2018 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.761 T 12-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 1.7E-20 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 Pfam PF04055 Radical SAM superfamily 50 202 6.1E-17 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 2.3E-125 T 12-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 SMART SM00729 43 255 1.7E-41 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 SUPERFAMILY SSF102114 5 313 2.62E-95 T 12-10-2018 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 Gene3D G3DSA:3.20.20.70 4 315 3.8E-135 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 PIRSF PIRSF001619 1 319 9.8E-139 T 12-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YPK_2931 556276d9b1ccec551de2f97ca40c005d 345 SMART SM00876 220 312 1.5E-48 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 Gene3D G3DSA:2.60.40.3710 117 198 1.4E-5 T 12-10-2018 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 Pfam PF01835 MG2 domain 725 821 1.7E-15 T 12-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 Gene3D G3DSA:1.50.10.20 1493 1763 1.8E-9 T 12-10-2018 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 611 714 1.1E-23 T 12-10-2018 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 SMART SM01360 1294 1386 1.6E-22 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 SMART SM01359 1089 1228 8.2E-33 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 1089 1227 1.9E-11 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 Pfam PF00207 Alpha-2-macroglobulin family 1295 1373 4.9E-11 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 YPK_3053 07a01c78556508c14f0e860afcb16aa9 1992 SUPERFAMILY SSF48239 1497 1754 1.33E-15 T 12-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid YPK_3578 794d6c880217e31ee86c274376a58450 160 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 12-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 YPK_3578 794d6c880217e31ee86c274376a58450 160 Gene3D G3DSA:3.40.430.10 1 160 1.3E-59 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 YPK_3578 794d6c880217e31ee86c274376a58450 160 PRINTS PR00070 Dihydrofolate reductase signature 41 52 1.1E-14 T 12-10-2018 YPK_3578 794d6c880217e31ee86c274376a58450 160 PRINTS PR00070 Dihydrofolate reductase signature 14 24 1.1E-14 T 12-10-2018 YPK_3578 794d6c880217e31ee86c274376a58450 160 PRINTS PR00070 Dihydrofolate reductase signature 28 36 1.1E-14 T 12-10-2018 YPK_3578 794d6c880217e31ee86c274376a58450 160 PRINTS PR00070 Dihydrofolate reductase signature 91 105 1.1E-14 T 12-10-2018 YPK_3578 794d6c880217e31ee86c274376a58450 160 PIRSF PIRSF000194 1 160 1.3E-58 T 12-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 YPK_3578 794d6c880217e31ee86c274376a58450 160 SUPERFAMILY SSF53597 1 160 1.44E-57 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 YPK_3578 794d6c880217e31ee86c274376a58450 160 Pfam PF00186 Dihydrofolate reductase 3 159 6.1E-59 T 12-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 YPK_3987 cbb51e6ed47c8b52c98d722bdd184353 222 Hamap MF_02088 Probable queuosine precursor transporter. 7 213 15.282 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 YPK_3987 cbb51e6ed47c8b52c98d722bdd184353 222 Pfam PF02592 Putative vitamin uptake transporter 43 199 1.4E-33 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 YPK_3987 cbb51e6ed47c8b52c98d722bdd184353 222 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 205 2.6E-62 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 550 643 2.94E-19 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3652 3746 5.3E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2103 2197 6.87E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2006 2100 8.24E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3937 4038 8.63E-19 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4042 4136 1.14E-20 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1040 1134 9.22E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2196 2292 3.8E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4642 4736 4.3E-14 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4540 4634 5.9E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2487 2583 3.4E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3844 3938 1.4E-12 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1133 1230 3.4E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 645 740 1.2E-18 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3551 3647 2.6E-14 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 547 642 1.3E-17 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 839 939 1.8E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1521 1616 6.0E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4239 4336 2.1E-17 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1905 2001 9.6E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4939 5037 1.7E-14 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2681 2777 9.0E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3165 3261 1.4E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1809 1904 6.5E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4037 4134 4.9E-20 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4741 4832 1.7E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2293 2389 1.2E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4339 4438 3.3E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2875 2971 7.4E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3357 3453 4.8E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3648 3744 3.6E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4138 4236 1.8E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 743 837 3.8E-12 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2002 2098 1.2E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1712 1808 3.0E-17 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 5038 5137 8.0E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4439 4538 7.5E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1424 1519 6.8E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1617 1711 2.0E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3454 3550 2.9E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3745 3842 5.2E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3262 3356 1.3E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 940 1035 6.7E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2100 2195 2.3E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1231 1326 3.0E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2390 2486 3.6E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3939 4036 9.9E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1036 1132 2.8E-14 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2584 2680 7.9E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2972 3067 7.1E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 1327 1422 1.4E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 2778 2874 1.9E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 3068 3164 1.3E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3168 3260 1.96E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1813 1906 2.35E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 837 939 1.02E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3458 3552 1.31E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2782 2876 3.34E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4334 4439 1.79E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2685 2779 1.2E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.60.40.10 4841 4934 5.0E-8 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4543 4636 5.49E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2394 2488 7.65E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1620 1714 2.55E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1137 1231 7.65E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4436 4529 3.92E-15 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2975 3069 2.75E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00257 90 138 2.0E-6 T 12-10-2018 IPR018392 LysM domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3846 3936 0.0014 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4643 4732 3.5E-4 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2879 2967 2.5E-7 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2103 2193 3.6E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2297 2387 1.3E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3458 3548 1.5E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 550 639 2.0E-14 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2200 2290 1.2E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2975 3064 1.4E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4042 4131 4.9E-11 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 845 934 1.6E-7 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 650 739 1.1E-12 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 5044 5134 1.3E-7 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1427 1516 8.0E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2006 2096 4.2E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4844 4934 0.015 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2491 2581 1.6E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1909 1998 5.3E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2782 2872 2.5E-7 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4344 4433 8.6E-5 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4244 4333 3.0E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3072 3162 1.4E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 943 1033 2.4E-6 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3361 3451 1.1E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3652 3742 1.8E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3944 4033 1.1E-4 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1040 1130 2.2E-6 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1524 1613 3.0E-4 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2588 2678 1.2E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1331 1419 6.1E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4444 4533 3.7E-4 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1234 1324 1.6E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2394 2484 2.0E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1137 1227 2.0E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 2685 2775 1.1E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1813 1902 1.7E-6 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3169 3258 0.0012 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3555 3645 2.2E-6 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3265 3353 3.4E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4946 5035 3.0E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4542 4631 3.1E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 3749 3838 2.6E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 746 835 0.016 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1620 1709 4.9E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 1717 1806 2.3E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4144 4231 1.6E-5 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SMART SM00634 4745 4833 4.1E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1330 1422 1.2E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:2.40.160.160 201 445 4.2E-111 T 12-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 945 1037 9.03E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4646 4739 5.3E-15 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4735 4833 1.1E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1717 1810 2.35E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3361 3455 1.02E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 5139 5220 2.63E-19 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1909 2003 2.16E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2491 2585 1.88E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1234 1328 1.88E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2878 2970 3.92E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4938 5040 2.16E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 4446 4524 2.5E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2494 2572 1.0E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 1237 1315 1.0E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 946 1033 8.1E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 4949 5030 5.1E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2688 2766 2.9E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 850 925 1.3E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2978 3061 6.9E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 3558 3636 2.3E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 1430 1513 2.7E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 3752 3835 1.6E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 3364 3451 9.6E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 4045 4127 1.5E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 4644 4727 1.6E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2591 2672 7.9E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 4752 4825 1.9E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 1912 1990 1.4E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 3075 3162 1.8E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 4151 4229 4.6E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2785 2872 1.6E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2106 2193 7.5E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 3655 3742 1.4E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 5048 5130 1.1E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 1623 1701 1.0E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 1140 1227 1.7E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 1043 1121 2.3E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 553 640 1.1E-11 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2009 2096 2.1E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 3461 3548 2.9E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2300 2378 3.1E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2397 2484 1.7E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 652 738 1.1E-11 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 4250 4333 6.7E-11 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF02369 Bacterial Ig-like domain (group 1) 2203 2290 4.0E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 743 825 1.65E-13 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 652 742 1.06E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2588 2682 9.81E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4837 4937 1.06E-14 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3555 3649 9.22E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2200 2294 9.22E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 2297 2391 1.04E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4132 4237 1.86E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3264 3356 7.26E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3749 3843 1.0E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3072 3166 3.14E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1524 1617 7.06E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 4234 4335 2.35E-19 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Gene3D G3DSA:3.10.350.10 79 148 2.9E-8 T 12-10-2018 IPR036779 LysM domain superfamily YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF11924 Inverse autotransporter, beta-domain 165 438 2.1E-116 T 12-10-2018 IPR024519 Inverse autotransporter, beta-domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 1427 1521 2.35E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 Pfam PF01476 LysM domain 91 138 9.4E-6 T 12-10-2018 IPR018392 LysM domain YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 3848 3940 6.47E-13 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 SUPERFAMILY SSF49373 5043 5136 1.92E-16 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_0145 1822af70b15b425fd616a600ed173b64 5337 PRINTS PR01369 Intimin signature 318 337 3.7E-11 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_0145 1822af70b15b425fd616a600ed173b64 5337 PRINTS PR01369 Intimin signature 386 405 3.7E-11 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_0145 1822af70b15b425fd616a600ed173b64 5337 PRINTS PR01369 Intimin signature 290 305 3.7E-11 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_0145 1822af70b15b425fd616a600ed173b64 5337 PRINTS PR01369 Intimin signature 473 485 3.7E-11 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 94 102 - T 12-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 PRINTS PR00714 Phosphomannose isomerase type I signature 49 70 2.6E-60 T 12-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 PRINTS PR00714 Phosphomannose isomerase type I signature 188 203 2.6E-60 T 12-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 PRINTS PR00714 Phosphomannose isomerase type I signature 242 261 2.6E-60 T 12-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 PRINTS PR00714 Phosphomannose isomerase type I signature 94 117 2.6E-60 T 12-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 PRINTS PR00714 Phosphomannose isomerase type I signature 204 223 2.6E-60 T 12-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 PRINTS PR00714 Phosphomannose isomerase type I signature 223 242 2.6E-60 T 12-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 Gene3D G3DSA:1.10.441.10 118 268 7.0E-131 T 12-10-2018 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 223 248 - T 12-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 Gene3D G3DSA:2.60.120.10 1 243 7.0E-131 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1986 b0c29e24e6882592804c475587f05ab2 359 Pfam PF01238 Phosphomannose isomerase type I 1 323 4.1E-91 T 12-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 PIRSF PIRSF001480 1 359 1.8E-100 T 12-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_1986 b0c29e24e6882592804c475587f05ab2 359 SUPERFAMILY SSF51182 2 342 5.67E-95 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_1986 b0c29e24e6882592804c475587f05ab2 359 Gene3D G3DSA:2.60.120.10 269 350 7.0E-131 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1986 b0c29e24e6882592804c475587f05ab2 359 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 1 350 3.0E-111 T 12-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 YPK_3108 d47675e2dd354d0f52a08b96b6aff90d 80 SUPERFAMILY SSF54857 1 77 2.75E-21 T 12-10-2018 IPR036687 DinI-like superfamily YPK_3108 d47675e2dd354d0f52a08b96b6aff90d 80 Pfam PF06183 DinI-like family 17 76 3.9E-22 T 12-10-2018 IPR010391 DNA damage-inducible protein DinI-like YPK_3108 d47675e2dd354d0f52a08b96b6aff90d 80 Gene3D G3DSA:3.30.910.10 1 79 6.2E-16 T 12-10-2018 IPR036687 DinI-like superfamily YPK_1012 ecb4136429c666f16768b4d3400346b8 396 Gene3D G3DSA:3.30.420.370 149 214 6.3E-60 T 12-10-2018 YPK_1012 ecb4136429c666f16768b4d3400346b8 396 SUPERFAMILY SSF53067 13 151 2.14E-26 T 12-10-2018 YPK_1012 ecb4136429c666f16768b4d3400346b8 396 Gene3D G3DSA:3.30.420.380 13 236 6.3E-60 T 12-10-2018 YPK_1012 ecb4136429c666f16768b4d3400346b8 396 Pfam PF05134 Type II secretion system (T2SS), protein L 14 238 3.8E-71 T 12-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain YPK_1012 ecb4136429c666f16768b4d3400346b8 396 SUPERFAMILY SSF53067 154 237 8.03E-14 T 12-10-2018 YPK_1012 ecb4136429c666f16768b4d3400346b8 396 Pfam PF12693 GspL periplasmic domain 245 395 3.5E-36 T 12-10-2018 IPR025691 GspL periplasmic domain YPK_1012 ecb4136429c666f16768b4d3400346b8 396 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 14 396 5.3E-104 T 12-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 YPK_3233 46c7895dfe6201db242cd9810500d63b 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 1.1E-212 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 YPK_3233 46c7895dfe6201db242cd9810500d63b 423 SMART SM00994 12 51 1.0E-24 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 YPK_3233 46c7895dfe6201db242cd9810500d63b 423 Gene3D G3DSA:3.30.50.30 2 52 9.3E-28 T 12-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily YPK_3233 46c7895dfe6201db242cd9810500d63b 423 Gene3D G3DSA:3.40.50.300 62 315 3.4E-108 T 12-10-2018 YPK_3233 46c7895dfe6201db242cd9810500d63b 423 SMART SM01086 317 412 4.5E-34 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_3233 46c7895dfe6201db242cd9810500d63b 423 SUPERFAMILY SSF52540 63 402 7.64E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3233 46c7895dfe6201db242cd9810500d63b 423 SUPERFAMILY SSF57716 13 48 5.84E-12 T 12-10-2018 YPK_3233 46c7895dfe6201db242cd9810500d63b 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.371 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 YPK_3233 46c7895dfe6201db242cd9810500d63b 423 SMART SM00382 111 333 6.1E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3233 46c7895dfe6201db242cd9810500d63b 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 394 5.7E-17 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_3233 46c7895dfe6201db242cd9810500d63b 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 1.2E-20 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 YPK_3233 46c7895dfe6201db242cd9810500d63b 423 Gene3D G3DSA:1.10.8.60 316 423 6.1E-42 T 12-10-2018 YPK_3233 46c7895dfe6201db242cd9810500d63b 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 2.2E-48 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_1669 1bdcb837152ffa6dda53e60c21580649 352 Pfam PF01594 AI-2E family transporter 14 327 4.7E-71 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like YPK_1803 d792232c47314edd81bfd7074e8e583a 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 2.7E-136 T 12-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 YPK_1803 d792232c47314edd81bfd7074e8e583a 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 250 2.2E-58 T 12-10-2018 YPK_1803 d792232c47314edd81bfd7074e8e583a 253 SUPERFAMILY SSF51735 9 252 3.58E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1803 d792232c47314edd81bfd7074e8e583a 253 Gene3D G3DSA:3.40.50.720 1 253 4.9E-83 T 12-10-2018 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 SUPERFAMILY SSF53901 15 295 5.61E-65 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 9.9E-133 T 12-10-2018 IPR002155 Thiolase GO:0016747 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 PIRSF PIRSF000429 9 436 6.9E-125 T 12-10-2018 IPR002155 Thiolase GO:0016747 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 SUPERFAMILY SSF53901 297 435 5.43E-32 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 69.81 T 12-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 Pfam PF00108 Thiolase, N-terminal domain 15 288 1.4E-63 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 1.7E-36 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 9.7E-255 T 12-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 YPK_1508 04fd95fc20eaba2ccfb5880686c9dca6 436 Gene3D G3DSA:3.40.47.10 7 435 2.6E-117 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 SUPERFAMILY SSF55961 160 371 8.63E-35 T 12-10-2018 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 89 112 - T 12-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 Gene3D G3DSA:3.90.380.10 160 246 1.0E-12 T 12-10-2018 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 Hamap MF_02097 Carnitine monooxygenase oxygenase subunit. 1 373 75.728 T 12-10-2018 IPR039004 Carnitine monooxygenase oxygenase subunit GO:0009437|GO:0051537 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 Pfam PF00355 Rieske [2Fe-2S] domain 46 134 1.8E-19 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 Gene3D G3DSA:3.90.380.10 247 374 3.0E-6 T 12-10-2018 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 Gene3D G3DSA:2.102.10.10 44 159 6.3E-37 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 SUPERFAMILY SSF50022 18 160 6.29E-46 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 184 372 4.0E-21 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 103 123 1.2E-23 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 61 76 1.2E-23 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 144 170 1.2E-23 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 82 102 1.2E-23 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YPK_1619 82283192da8fec5cf061ea480ffb4f08 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 31 56 1.2E-23 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 YPK_0836 655dcbcc50e88327b28b430fee53516a 140 SMART SM00732 4 104 5.6E-43 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 YPK_0836 655dcbcc50e88327b28b430fee53516a 140 Gene3D G3DSA:3.30.420.140 2 139 4.8E-47 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 YPK_0836 655dcbcc50e88327b28b430fee53516a 140 SUPERFAMILY SSF53098 4 137 2.58E-43 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_0836 655dcbcc50e88327b28b430fee53516a 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 3.0E-59 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 YPK_0836 655dcbcc50e88327b28b430fee53516a 140 Pfam PF03652 Holliday junction resolvase 5 137 3.5E-43 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 YPK_0836 655dcbcc50e88327b28b430fee53516a 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 26.091 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 YPK_2536 afc53b3e7143e58ba863fec0e28986bc 297 Gene3D G3DSA:3.90.550.10 2 297 3.1E-79 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2536 afc53b3e7143e58ba863fec0e28986bc 297 SUPERFAMILY SSF53448 1 289 4.96E-57 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2536 afc53b3e7143e58ba863fec0e28986bc 297 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 273 3.6E-102 T 12-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 YPK_2536 afc53b3e7143e58ba863fec0e28986bc 297 Pfam PF00483 Nucleotidyl transferase 5 252 6.9E-22 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 Pfam PF01170 Putative RNA methylase family UPF0020 162 375 1.7E-62 T 12-10-2018 IPR000241 Putative RNA methylase domain YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 SUPERFAMILY SSF53335 396 701 4.0E-67 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 Gene3D G3DSA:3.40.50.150 484 702 7.7E-73 T 12-10-2018 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 SMART SM00981 56 154 1.3E-18 T 12-10-2018 IPR004114 THUMP domain GO:0003723 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 Pfam PF02926 THUMP domain 23 152 2.5E-15 T 12-10-2018 IPR004114 THUMP domain GO:0003723 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 Gene3D G3DSA:3.30.2130.30 5 255 3.0E-146 T 12-10-2018 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 12-10-2018 IPR000241 Putative RNA methylase domain YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 Gene3D G3DSA:3.30.750.80 392 483 2.2E-36 T 12-10-2018 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 453 664 1.9E-19 T 12-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 Gene3D G3DSA:3.40.50.150 169 372 3.0E-146 T 12-10-2018 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 SUPERFAMILY SSF53335 146 373 3.98E-40 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 PIRSF PIRSF037618 1 703 3.2E-293 T 12-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 YPK_2641 915ef067e4c9fe9b1b7e40f603f3477a 706 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 702 32.241 T 12-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 YPK_1995 1013a1079dd1943eba885854c07ebd67 349 Gene3D G3DSA:3.30.360.10 127 330 8.9E-140 T 12-10-2018 YPK_1995 1013a1079dd1943eba885854c07ebd67 349 SUPERFAMILY SSF51735 3 196 3.32E-48 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1995 1013a1079dd1943eba885854c07ebd67 349 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 1.1E-23 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YPK_1995 1013a1079dd1943eba885854c07ebd67 349 Gene3D G3DSA:3.40.50.720 5 316 8.9E-140 T 12-10-2018 YPK_1995 1013a1079dd1943eba885854c07ebd67 349 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 241 1.8E-13 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 Gene3D G3DSA:3.40.50.880 1 191 1.4E-60 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 SUPERFAMILY SSF52317 1 190 1.05E-53 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 168 181 6.4E-37 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 47 56 6.4E-37 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 2 16 6.4E-37 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 74 85 6.4E-37 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 99 107 6.4E-37 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00097 Anthranilate synthase component II signature 119 131 6.4E-37 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 8.9E-6 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 8.9E-6 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 190 2.0E-92 T 12-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.9E-14 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 7.9E-14 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 7.9E-14 T 12-10-2018 YPK_0244 e97c854b3e7fb7d7108d06238bd36a17 191 Pfam PF00117 Glutamine amidotransferase class-I 3 189 7.4E-54 T 12-10-2018 IPR017926 Glutamine amidotransferase YPK_4068 20f71592d740fcfec8aa1e57053d6745 318 Gene3D G3DSA:3.40.50.2300 27 287 5.4E-109 T 12-10-2018 YPK_4068 20f71592d740fcfec8aa1e57053d6745 318 Gene3D G3DSA:3.40.50.2300 128 269 5.4E-109 T 12-10-2018 YPK_4068 20f71592d740fcfec8aa1e57053d6745 318 Pfam PF13407 Periplasmic binding protein domain 28 275 3.4E-45 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_4068 20f71592d740fcfec8aa1e57053d6745 318 SUPERFAMILY SSF53822 23 309 1.85E-72 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 Gene3D G3DSA:3.10.350.10 416 465 7.5E-14 T 12-10-2018 IPR036779 LysM domain superfamily YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 Pfam PF01464 Transglycosylase SLT domain 126 233 1.1E-28 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 SUPERFAMILY SSF54106 417 463 1.15E-9 T 12-10-2018 YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 SMART SM00257 418 463 3.3E-9 T 12-10-2018 IPR018392 LysM domain YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 SMART SM00257 365 409 1.7E-12 T 12-10-2018 IPR018392 LysM domain YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 SUPERFAMILY SSF54106 365 408 3.92E-10 T 12-10-2018 YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 Gene3D G3DSA:1.10.530.10 116 270 8.3E-33 T 12-10-2018 YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 SUPERFAMILY SSF53955 118 269 7.74E-42 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 140 168 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 Gene3D G3DSA:3.10.350.10 361 415 1.0E-14 T 12-10-2018 IPR036779 LysM domain superfamily YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 Pfam PF01476 LysM domain 419 462 1.7E-9 T 12-10-2018 IPR018392 LysM domain YPK_1105 cd794e163526d73af6cfb12126ee26a7 472 Pfam PF01476 LysM domain 366 407 7.1E-13 T 12-10-2018 IPR018392 LysM domain YPK_2846 119277c0a6152381ade70b074c21cbb5 897 SMART SM00434 11 499 1.2E-300 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 SUPERFAMILY SSF56719 30 521 9.02E-183 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 12-10-2018 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 737 1.0E-14 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 3.7E-13 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 743 789 9.1E-15 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.9E-8 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 2.5E-10 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 5.8E-11 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 841 24.685 T 12-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Gene3D G3DSA:3.90.199.10 33 521 9.9E-235 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Gene3D G3DSA:2.120.10.90 535 841 2.8E-131 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPK_2846 119277c0a6152381ade70b074c21cbb5 897 SUPERFAMILY SSF101904 533 848 3.66E-114 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Gene3D G3DSA:1.10.268.10 370 493 9.9E-235 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Gene3D G3DSA:3.30.1360.40 236 333 9.9E-235 T 12-10-2018 YPK_2846 119277c0a6152381ade70b074c21cbb5 897 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 2.8E-152 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_1968 98d441d40675b60dfd9c19a3a9ab831d 392 Gene3D G3DSA:3.90.1150.10 14 385 2.7E-133 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1968 98d441d40675b60dfd9c19a3a9ab831d 392 Gene3D G3DSA:3.40.640.10 71 295 2.7E-133 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1968 98d441d40675b60dfd9c19a3a9ab831d 392 Pfam PF00155 Aminotransferase class I and II 46 386 9.6E-42 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_1968 98d441d40675b60dfd9c19a3a9ab831d 392 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 6 389 3.3E-127 T 12-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 YPK_1968 98d441d40675b60dfd9c19a3a9ab831d 392 SUPERFAMILY SSF53383 5 390 2.24E-99 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0914 fe6b37e404ec3cdde077c7b9ee7e0743 589 Pfam PF03406 Phage tail fibre repeat 304 343 7.8E-18 T 12-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 YPK_0914 fe6b37e404ec3cdde077c7b9ee7e0743 589 Pfam PF12571 Phage tail-collar fibre protein 2 158 2.9E-34 T 12-10-2018 IPR022225 Phage tail fibre protein YPK_0914 fe6b37e404ec3cdde077c7b9ee7e0743 589 Gene3D G3DSA:2.60.40.3940 489 589 3.6E-7 T 12-10-2018 YPK_0057 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 Gene3D G3DSA:3.40.50.2300 129 317 2.1E-122 T 12-10-2018 YPK_0057 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 Gene3D G3DSA:3.40.50.2300 29 305 2.1E-122 T 12-10-2018 YPK_0057 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 TIGRFAM TIGR02634 xylF: D-xylose ABC transporter, D-xylose-binding protein 28 330 6.3E-163 T 12-10-2018 IPR013456 D-xylose ABC transporter, substrate-binding protein GO:0015753|GO:0048029 YPK_0057 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 SUPERFAMILY SSF53822 24 317 5.62E-70 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0057 a04e67fb803b3b3f76aa8f7ebe2bff6d 331 Pfam PF13407 Periplasmic binding protein domain 38 285 3.1E-60 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_2125 b017b12e753d19eb6b3a41eb6f0daff7 562 Gene3D G3DSA:3.30.300.310 456 558 1.3E-31 T 12-10-2018 YPK_2125 b017b12e753d19eb6b3a41eb6f0daff7 562 Gene3D G3DSA:3.40.50.12780 12 451 3.0E-115 T 12-10-2018 YPK_2125 b017b12e753d19eb6b3a41eb6f0daff7 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 12-10-2018 IPR020845 AMP-binding, conserved site YPK_2125 b017b12e753d19eb6b3a41eb6f0daff7 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 469 543 1.2E-17 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain YPK_2125 b017b12e753d19eb6b3a41eb6f0daff7 562 SUPERFAMILY SSF56801 17 554 1.57E-147 T 12-10-2018 YPK_2125 b017b12e753d19eb6b3a41eb6f0daff7 562 Pfam PF00501 AMP-binding enzyme 29 460 5.3E-107 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 1.7E-26 T 12-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:2.40.270.10 1007 1242 2.7E-92 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.32 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 12-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1800.10 1252 1306 8.1E-11 T 12-10-2018 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 1.2E-57 T 12-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1110.10 157 270 5.9E-28 T 12-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.5E-30 T 12-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 341 454 3.5E-16 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 239 1.4E-7 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:2.40.50.100 714 788 8.0E-32 T 12-10-2018 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:2.40.50.150 833 955 3.1E-44 T 12-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 3.4E-27 T 12-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1100.10 442 624 1.9E-70 T 12-10-2018 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1100.10 19 156 2.6E-49 T 12-10-2018 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 1.4E-160 T 12-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:2.40.270.10 790 832 5.4E-7 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1100.10 642 713 4.8E-21 T 12-10-2018 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 SUPERFAMILY SSF64484 11 1340 0.0 T 12-10-2018 YPK_0340 95a4f5de45c83d19c36d6ff3d7c4f6f4 1342 Gene3D G3DSA:3.90.1110.10 317 441 3.5E-36 T 12-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_2695 0f067b535f81dc351886a6b81d5d362c 649 Pfam PF02687 FtsX-like permease family 554 642 1.0E-10 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YPK_2695 0f067b535f81dc351886a6b81d5d362c 649 Pfam PF00005 ABC transporter 24 172 1.2E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2695 0f067b535f81dc351886a6b81d5d362c 649 SMART SM00382 33 220 2.4E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2695 0f067b535f81dc351886a6b81d5d362c 649 Gene3D G3DSA:3.40.50.300 1 258 1.3E-68 T 12-10-2018 YPK_2695 0f067b535f81dc351886a6b81d5d362c 649 Pfam PF12704 MacB-like periplasmic core domain 273 491 2.1E-36 T 12-10-2018 IPR025857 MacB-like periplasmic core domain YPK_2695 0f067b535f81dc351886a6b81d5d362c 649 SUPERFAMILY SSF52540 4 225 2.0E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2695 0f067b535f81dc351886a6b81d5d362c 649 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3731 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:3.30.1480.10 1 129 2.1E-46 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 YPK_3731 6911cb32b94c96760f650d1285816272 495 SMART SM00322 301 358 0.19 T 12-10-2018 IPR004087 K Homology domain GO:0003676 YPK_3731 6911cb32b94c96760f650d1285816272 495 SMART SM00322 230 293 17.0 T 12-10-2018 IPR004087 K Homology domain GO:0003676 YPK_3731 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF50249 133 199 2.23E-16 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3731 6911cb32b94c96760f650d1285816272 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 410 29.039 T 12-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 YPK_3731 6911cb32b94c96760f650d1285816272 495 SMART SM00316 133 200 8.9E-7 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_3731 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF54814 279 342 6.54E-15 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 YPK_3731 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF47794 429 492 1.88E-17 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 YPK_3731 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:1.10.150.20 431 490 2.2E-25 T 12-10-2018 YPK_3731 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF54814 202 278 1.18E-28 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 YPK_3731 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:3.30.300.20 278 346 1.1E-23 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta YPK_3731 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF69705 1 126 5.62E-42 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 YPK_3731 6911cb32b94c96760f650d1285816272 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 441 489 4.2E-18 T 12-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication YPK_3731 6911cb32b94c96760f650d1285816272 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 5.9E-21 T 12-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication YPK_3731 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:3.30.300.20 199 277 9.5E-31 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta YPK_3731 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:1.10.150.20 352 421 3.0E-31 T 12-10-2018 YPK_3731 6911cb32b94c96760f650d1285816272 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 6.7E-130 T 12-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 YPK_3731 6911cb32b94c96760f650d1285816272 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 1.7E-9 T 12-10-2018 YPK_3731 6911cb32b94c96760f650d1285816272 495 SUPERFAMILY SSF47794 355 415 1.52E-16 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 YPK_3731 6911cb32b94c96760f650d1285816272 495 Gene3D G3DSA:2.40.50.140 135 198 6.8E-19 T 12-10-2018 YPK_3731 6911cb32b94c96760f650d1285816272 495 Pfam PF13184 NusA-like KH domain 230 297 8.1E-28 T 12-10-2018 IPR025249 KH domain, NusA-like GO:0003723 YPK_3731 6911cb32b94c96760f650d1285816272 495 Pfam PF08529 NusA N-terminal domain 4 123 8.7E-37 T 12-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Gene3D G3DSA:3.10.100.10 870 969 2.1E-56 T 12-10-2018 IPR016186 C-type lectin-like/link domain superfamily YPK_2429 6fb090f62ce057833464b997d022f8ad 969 SUPERFAMILY SSF56436 870 968 9.42E-56 T 12-10-2018 IPR016187 C-type lectin fold YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Pfam PF07979 Intimin C-type lectin domain 869 947 4.3E-11 T 12-10-2018 IPR013117 Intimin, C-terminal YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Gene3D G3DSA:2.60.40.10 676 777 7.2E-26 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2429 6fb090f62ce057833464b997d022f8ad 969 SUPERFAMILY SSF49373 581 674 1.55E-24 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Gene3D G3DSA:2.40.160.160 130 374 1.3E-109 T 12-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily YPK_2429 6fb090f62ce057833464b997d022f8ad 969 SUPERFAMILY SSF49373 780 868 8.24E-31 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Gene3D G3DSA:2.60.40.10 579 675 6.7E-23 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2429 6fb090f62ce057833464b997d022f8ad 969 SUPERFAMILY SSF49373 680 773 9.03E-17 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Pfam PF11924 Inverse autotransporter, beta-domain 105 367 6.2E-105 T 12-10-2018 IPR024519 Inverse autotransporter, beta-domain YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Gene3D G3DSA:2.60.40.10 478 578 5.0E-24 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Pfam PF02369 Bacterial Ig-like domain (group 1) 485 577 2.5E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_2429 6fb090f62ce057833464b997d022f8ad 969 SMART SM00634 486 575 9.9E-26 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_2429 6fb090f62ce057833464b997d022f8ad 969 SMART SM00634 584 670 1.2E-20 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Pfam PF09134 Invasin, domain 3 681 776 9.2E-15 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Pfam PF09134 Invasin, domain 3 582 676 4.0E-17 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_2429 6fb090f62ce057833464b997d022f8ad 969 SUPERFAMILY SSF49373 486 578 1.0E-40 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2429 6fb090f62ce057833464b997d022f8ad 969 PRINTS PR01369 Intimin signature 247 266 1.3E-8 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_2429 6fb090f62ce057833464b997d022f8ad 969 PRINTS PR01369 Intimin signature 219 234 1.3E-8 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_2429 6fb090f62ce057833464b997d022f8ad 969 PRINTS PR01369 Intimin signature 315 334 1.3E-8 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_2429 6fb090f62ce057833464b997d022f8ad 969 Gene3D G3DSA:2.60.40.1080 779 869 1.3E-25 T 12-10-2018 YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 Gene3D G3DSA:1.20.1280.20 80 171 1.9E-24 T 12-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 SMART SM00271 1 66 7.8E-9 T 12-10-2018 IPR001623 DnaJ domain YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 Pfam PF00226 DnaJ domain 2 70 6.9E-7 T 12-10-2018 IPR001623 DnaJ domain YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 4.2E-52 T 12-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 SUPERFAMILY SSF46565 1 74 3.53E-18 T 12-10-2018 IPR036869 Chaperone J-domain superfamily YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 SUPERFAMILY SSF47144 78 171 1.12E-24 T 12-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 Pfam PF07743 HSCB C-terminal oligomerisation domain 88 163 5.0E-16 T 12-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 25.199 T 12-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_1279 2618991127aa6bffbf98e337e8caa7ed 174 Gene3D G3DSA:1.10.287.110 1 79 3.6E-24 T 12-10-2018 IPR036869 Chaperone J-domain superfamily YPK_1528 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 316 5.1E-35 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_1528 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 Gene3D G3DSA:3.40.50.720 7 328 2.6E-110 T 12-10-2018 YPK_1528 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 SUPERFAMILY SSF51735 5 157 9.24E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1528 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 PIRSF PIRSF000148 4 336 6.2E-98 T 12-10-2018 YPK_1528 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 2.3E-25 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YPK_1528 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 SUPERFAMILY SSF55347 132 318 5.06E-53 T 12-10-2018 YPK_1528 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 Gene3D G3DSA:3.30.360.10 130 314 2.6E-110 T 12-10-2018 YPK_1528 b2d2a0d6dfebbcf0f55f051a4e7a79df 336 SMART SM00859 6 121 1.8E-34 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 Pfam PF01266 FAD dependent oxidoreductase 266 644 3.1E-55 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 Gene3D G3DSA:3.30.9.10 351 574 1.8E-153 T 12-10-2018 YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 SUPERFAMILY SSF53335 138 242 4.32E-5 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 118 244 1.5E-49 T 12-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 Gene3D G3DSA:3.40.50.150 9 251 1.0E-108 T 12-10-2018 YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 266 674 4.3E-157 T 12-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 669 28.253 T 12-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 Gene3D G3DSA:3.50.50.60 267 671 1.8E-153 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1519 36d3be2e5baab1e35dbfb7331105eb26 689 SUPERFAMILY SSF51905 266 673 2.07E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0569 256f536e59d5ec09e81c7ed34c7c6fff 213 Gene3D G3DSA:2.60.60.30 19 204 3.5E-53 T 12-10-2018 YPK_0569 256f536e59d5ec09e81c7ed34c7c6fff 213 Pfam PF02342 TerD domain 1 203 2.8E-53 T 12-10-2018 IPR003325 TerD domain YPK_0306 c1ca87aaced6c0e7222f5c1f70ff2d28 129 SUPERFAMILY SSF53137 15 129 4.58E-48 T 12-10-2018 YPK_0306 c1ca87aaced6c0e7222f5c1f70ff2d28 129 PIRSF PIRSF002131 1 129 1.3E-52 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 YPK_0306 c1ca87aaced6c0e7222f5c1f70ff2d28 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 2.8E-55 T 12-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0306 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.637 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 YPK_0306 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Pfam PF00411 Ribosomal protein S11 19 128 1.6E-54 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 YPK_0306 c1ca87aaced6c0e7222f5c1f70ff2d28 129 Gene3D G3DSA:3.30.420.80 1 129 1.5E-58 T 12-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0306 c1ca87aaced6c0e7222f5c1f70ff2d28 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 12-10-2018 IPR018102 Ribosomal S11, conserved site YPK_1706 316d511d5aa36a56af594f6da337d078 1148 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1079 0.0 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Gene3D G3DSA:3.90.1150.50 1001 1148 2.7E-46 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SUPERFAMILY SSF141259 468 545 5.36E-24 T 12-10-2018 IPR036101 CarD-like/TRCF domain superfamily YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Gene3D G3DSA:3.40.50.11140 354 450 4.0E-36 T 12-10-2018 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Gene3D G3DSA:2.30.30.840 480 538 4.7E-235 T 12-10-2018 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Gene3D G3DSA:3.30.2060.10 128 213 2.5E-129 T 12-10-2018 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SUPERFAMILY SSF52540 8 341 4.69E-102 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Gene3D G3DSA:3.40.50.11180 24 334 2.5E-129 T 12-10-2018 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Pfam PF00270 DEAD/DEAH box helicase 602 762 9.6E-19 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SUPERFAMILY SSF52540 779 987 5.92E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SMART SM00487 597 787 6.0E-33 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SMART SM00490 823 907 1.4E-19 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SUPERFAMILY SSF52540 520 780 2.45E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 32 1140 27.705 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Gene3D G3DSA:3.40.50.300 475 987 4.7E-235 T 12-10-2018 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Pfam PF03461 TRCF domain 1007 1097 3.6E-27 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SUPERFAMILY SSF143517 992 1144 1.22E-43 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SMART SM00982 1005 1105 2.2E-47 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Pfam PF02559 CarD-like/TRCF domain 477 572 2.3E-24 T 12-10-2018 IPR003711 CarD-like/TRCF domain YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SMART SM01058 476 573 6.0E-51 T 12-10-2018 IPR003711 CarD-like/TRCF domain YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Pfam PF00271 Helicase conserved C-terminal domain 803 906 1.3E-17 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_1706 316d511d5aa36a56af594f6da337d078 1148 Gene3D G3DSA:3.40.50.300 539 778 4.7E-235 T 12-10-2018 YPK_1706 316d511d5aa36a56af594f6da337d078 1148 SUPERFAMILY SSF52540 351 463 2.71E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1108 7450947fe154a02532eb73441684f18f 154 SUPERFAMILY SSF53098 3 143 2.02E-58 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_1108 7450947fe154a02532eb73441684f18f 154 Hamap MF_00042 Ribonuclease H [rnhA]. 2 149 38.32 T 12-10-2018 IPR022892 Ribonuclease HI GO:0004523 YPK_1108 7450947fe154a02532eb73441684f18f 154 Pfam PF00075 RNase H 3 141 2.6E-53 T 12-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 YPK_1108 7450947fe154a02532eb73441684f18f 154 Gene3D G3DSA:3.30.420.10 1 154 1.8E-60 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_4184 e8b133d8c7769d3dfbe556f8dacf2530 307 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 165 298 3.1E-49 T 12-10-2018 IPR012660 Thioesterase, putative YPK_4184 e8b133d8c7769d3dfbe556f8dacf2530 307 Gene3D G3DSA:3.40.630.30 2 145 4.7E-25 T 12-10-2018 YPK_4184 e8b133d8c7769d3dfbe556f8dacf2530 307 Pfam PF00583 Acetyltransferase (GNAT) family 25 122 1.8E-13 T 12-10-2018 IPR000182 GNAT domain YPK_4184 e8b133d8c7769d3dfbe556f8dacf2530 307 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 158 297 2.5E-50 T 12-10-2018 IPR012660 Thioesterase, putative YPK_4184 e8b133d8c7769d3dfbe556f8dacf2530 307 SUPERFAMILY SSF54637 155 297 3.43E-43 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_4184 e8b133d8c7769d3dfbe556f8dacf2530 307 Gene3D G3DSA:3.10.129.10 147 299 7.2E-46 T 12-10-2018 YPK_4184 e8b133d8c7769d3dfbe556f8dacf2530 307 SUPERFAMILY SSF55729 2 170 2.36E-27 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_0632 e65a474b4ff626f22f93dd989039060d 79 Gene3D G3DSA:1.10.1660.20 3 77 9.4E-11 T 12-10-2018 IPR038137 Excisionase-like superfamily YPK_0632 e65a474b4ff626f22f93dd989039060d 79 Pfam PF07825 Excisionase-like protein 5 72 1.3E-7 T 12-10-2018 IPR012884 Excisionase-like GO:0003677|GO:0006310 YPK_0632 e65a474b4ff626f22f93dd989039060d 79 SUPERFAMILY SSF46955 4 78 5.13E-21 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_3214 e170c44f73704e57c10cc6de67d4d054 67 Pfam PF05321 Haemolysin expression modulating protein 8 64 4.1E-33 T 12-10-2018 IPR007985 Haemolysin expression modulating, HHA YPK_3214 e170c44f73704e57c10cc6de67d4d054 67 SUPERFAMILY SSF68989 1 67 1.22E-30 T 12-10-2018 IPR036666 HHA superfamily YPK_3214 e170c44f73704e57c10cc6de67d4d054 67 Gene3D G3DSA:1.20.1280.40 1 67 3.7E-37 T 12-10-2018 IPR036666 HHA superfamily YPK_0889 2159e60e1c1dc0f7cb25c3344f02d9d5 75 ProDom PD057914 C0939 STY4639 GPA GP33 PRECURSOR FELS-2 5'REGION STY3665 SIGNAL PHAGE-RELATED 14 75 4.0E-14 T 12-10-2018 IPR020126 Protein of unknown function DUF2732 YPK_0889 2159e60e1c1dc0f7cb25c3344f02d9d5 75 Pfam PF10809 Protein of unknown function (DUF2732) 14 73 4.8E-15 T 12-10-2018 IPR020126 Protein of unknown function DUF2732 YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.329 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 Gene3D G3DSA:3.40.5.10 1 50 5.1E-25 T 12-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 Gene3D G3DSA:3.10.430.100 61 149 3.4E-30 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 SUPERFAMILY SSF55658 1 57 4.01E-19 T 12-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 SUPERFAMILY SSF55653 60 149 1.83E-25 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 5.5E-22 T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 5.5E-58 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3781 4f15fa63384c41e4a50f109311453b3f 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 4.4E-25 T 12-10-2018 IPR020069 Ribosomal protein L9, C-terminal YPK_3080 f99a06409813b9c3c99dfa5e514c2d6c 439 Pfam PF14378 PAP2 superfamily 78 200 1.1E-8 T 12-10-2018 IPR026841 Inositolphosphotransferase Aur1/Ipt1 YPK_3080 f99a06409813b9c3c99dfa5e514c2d6c 439 Pfam PF00782 Dual specificity phosphatase, catalytic domain 346 431 2.5E-14 T 12-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 YPK_3080 f99a06409813b9c3c99dfa5e514c2d6c 439 SUPERFAMILY SSF52799 285 436 1.36E-22 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like YPK_3080 f99a06409813b9c3c99dfa5e514c2d6c 439 Gene3D G3DSA:3.90.190.10 303 436 6.8E-20 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like YPK_3080 f99a06409813b9c3c99dfa5e514c2d6c 439 SMART SM00404 337 428 0.0077 T 12-10-2018 IPR003595 Protein-tyrosine phosphatase, catalytic YPK_3080 f99a06409813b9c3c99dfa5e514c2d6c 439 SMART SM00195 302 433 8.4E-8 T 12-10-2018 IPR020422 Dual specificity protein phosphatase domain GO:0006470|GO:0008138 YPK_0297 211d9feed7e2d2f269ca9fd76d452cb0 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0297 211d9feed7e2d2f269ca9fd76d452cb0 130 Pfam PF00410 Ribosomal protein S8 5 129 1.7E-48 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0297 211d9feed7e2d2f269ca9fd76d452cb0 130 Gene3D G3DSA:3.30.1370.30 2 72 1.0E-27 T 12-10-2018 YPK_0297 211d9feed7e2d2f269ca9fd76d452cb0 130 Gene3D G3DSA:3.30.1490.10 73 130 1.4E-25 T 12-10-2018 YPK_0297 211d9feed7e2d2f269ca9fd76d452cb0 130 SUPERFAMILY SSF56047 5 129 2.09E-46 T 12-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0297 211d9feed7e2d2f269ca9fd76d452cb0 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.795 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_2602 9a92921df9fd79194889e8aa09cf8657 282 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 281 2.1E-16 T 12-10-2018 IPR020801 Polyketide synthase, acyl transferase domain YPK_2602 9a92921df9fd79194889e8aa09cf8657 282 SUPERFAMILY SSF52151 6 282 1.26E-51 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPK_2602 9a92921df9fd79194889e8aa09cf8657 282 PIRSF PIRSF000446 2 282 3.7E-68 T 12-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 YPK_2602 9a92921df9fd79194889e8aa09cf8657 282 SUPERFAMILY SSF55048 124 191 4.05E-12 T 12-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPK_2602 9a92921df9fd79194889e8aa09cf8657 282 Pfam PF00698 Acyl transferase domain 8 231 2.0E-18 T 12-10-2018 IPR014043 Acyl transferase YPK_2602 9a92921df9fd79194889e8aa09cf8657 282 Gene3D G3DSA:3.40.366.10 8 277 2.3E-75 T 12-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 YPK_2602 9a92921df9fd79194889e8aa09cf8657 282 Gene3D G3DSA:3.30.70.250 123 190 2.3E-75 T 12-10-2018 YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 12-10-2018 YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 Gene3D G3DSA:3.40.50.2300 72 310 3.4E-41 T 12-10-2018 YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 SUPERFAMILY SSF53822 69 333 1.58E-38 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.2E-15 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 Gene3D G3DSA:1.10.260.40 1 58 3.5E-17 T 12-10-2018 YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 326 5.3E-48 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 SUPERFAMILY SSF47413 1 59 1.13E-14 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 SMART SM00354 1 73 7.1E-19 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1724 cba3691f1300beceb68cffb9a5fdd06a 348 Gene3D G3DSA:3.40.50.2300 161 295 3.4E-41 T 12-10-2018 YPK_2134 54e036a702cfd50d244e90f03126030c 494 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 16 189 3.3E-59 T 12-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 179 185 - T 12-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 Gene3D G3DSA:3.30.360.10 179 479 6.6E-169 T 12-10-2018 YPK_2134 54e036a702cfd50d244e90f03126030c 494 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 12 492 3.8E-200 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 Gene3D G3DSA:3.40.50.720 15 440 6.6E-169 T 12-10-2018 YPK_2134 54e036a702cfd50d244e90f03126030c 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 1.2E-47 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 1.2E-47 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 1.2E-47 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 330 356 1.2E-47 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 1.2E-47 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 SUPERFAMILY SSF55347 179 491 5.56E-113 T 12-10-2018 YPK_2134 54e036a702cfd50d244e90f03126030c 494 PIRSF PIRSF000110 1 494 3.5E-183 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 SUPERFAMILY SSF51735 4 192 5.77E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2134 54e036a702cfd50d244e90f03126030c 494 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 191 491 1.1E-115 T 12-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_2134 54e036a702cfd50d244e90f03126030c 494 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 12 492 91.621 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 SUPERFAMILY SSF55021 420 512 1.03E-25 T 12-10-2018 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 SUPERFAMILY SSF53686 14 365 6.81E-101 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 Gene3D G3DSA:3.40.50.1100 61 157 4.3E-130 T 12-10-2018 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 3.0E-28 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 6.9E-26 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 SUPERFAMILY SSF55021 336 423 9.16E-28 T 12-10-2018 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 Gene3D G3DSA:3.40.1020.10 338 514 7.4E-72 T 12-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 29 316 1.7E-76 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 Gene3D G3DSA:3.40.50.1100 25 327 4.3E-130 T 12-10-2018 YPK_4056 c4b98d901d0e264b88f4115c30857cc8 514 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 6.1E-261 T 12-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 YPK_3803 4bd9c786e7b6cecb4f51ce9c569acf13 156 SUPERFAMILY SSF52540 29 148 1.9E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3803 4bd9c786e7b6cecb4f51ce9c569acf13 156 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 131 3.3E-41 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 YPK_3803 4bd9c786e7b6cecb4f51ce9c569acf13 156 Gene3D G3DSA:3.40.50.300 1 153 2.7E-47 T 12-10-2018 YPK_3803 4bd9c786e7b6cecb4f51ce9c569acf13 156 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 140 3.2E-51 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 TIGRFAM TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein 4 502 1.2E-264 T 12-10-2018 IPR013455 ABC transporter, D-xylose, ATP-binding protein GO:0005524|GO:0015614|GO:0015753|GO:0016020 YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 SUPERFAMILY SSF52540 3 229 9.78E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 Pfam PF00005 ABC transporter 278 433 1.5E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 SUPERFAMILY SSF52540 243 485 2.57E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 Gene3D G3DSA:3.40.50.300 3 240 3.4E-53 T 12-10-2018 YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 Gene3D G3DSA:3.40.50.300 256 509 7.9E-44 T 12-10-2018 YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 Pfam PF00005 ABC transporter 20 171 1.3E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 SMART SM00382 286 482 1.6E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0058 94261a1bef71ca30f30b3f29b5e41b93 510 SMART SM00382 29 219 4.8E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0764 758ee220efba255db801fe407e99db5b 741 SUPERFAMILY SSF69255 391 478 1.36E-33 T 12-10-2018 YPK_0764 758ee220efba255db801fe407e99db5b 741 Gene3D G3DSA:3.30.1920.30 250 313 6.0E-94 T 12-10-2018 YPK_0764 758ee220efba255db801fe407e99db5b 741 Gene3D G3DSA:2.30.110.50 51 356 6.0E-94 T 12-10-2018 YPK_0764 758ee220efba255db801fe407e99db5b 741 Pfam PF05954 Phage late control gene D protein (GPD) 58 356 1.3E-86 T 12-10-2018 YPK_0764 758ee220efba255db801fe407e99db5b 741 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 39 548 1.6E-204 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_0764 758ee220efba255db801fe407e99db5b 741 SUPERFAMILY SSF69279 218 392 1.21E-42 T 12-10-2018 YPK_0764 758ee220efba255db801fe407e99db5b 741 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 51 530 3.9E-206 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_0764 758ee220efba255db801fe407e99db5b 741 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 530 551 1.5E-4 T 12-10-2018 IPR010609 Gp5, C-terminal YPK_0764 758ee220efba255db801fe407e99db5b 741 SUPERFAMILY SSF69349 469 716 3.61E-48 T 12-10-2018 YPK_0764 758ee220efba255db801fe407e99db5b 741 Gene3D G3DSA:2.40.50.230 384 484 1.5E-42 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_0764 758ee220efba255db801fe407e99db5b 741 SUPERFAMILY SSF69279 39 214 7.94E-55 T 12-10-2018 YPK_0764 758ee220efba255db801fe407e99db5b 741 Gene3D G3DSA:3.55.50.10 127 218 6.0E-94 T 12-10-2018 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Gene3D G3DSA:3.20.20.20 345 647 1.1E-127 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Pfam PF00809 Pterin binding enzyme 365 603 2.1E-61 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Pfam PF02310 B12 binding domain 752 844 1.4E-18 T 12-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 942 1212 1.7E-123 T 12-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 SUPERFAMILY SSF51717 361 635 1.01E-87 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 SUPERFAMILY SSF52242 748 898 5.1E-46 T 12-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Gene3D G3DSA:1.10.1240.10 653 741 9.8E-40 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 PIRSF PIRSF000381 6 1199 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 SMART SM01018 661 744 5.7E-43 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 SUPERFAMILY SSF82282 12 404 1.31E-114 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 SUPERFAMILY SSF47644 657 743 5.36E-28 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Gene3D G3DSA:3.10.196.10 912 1227 4.0E-149 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Gene3D G3DSA:1.10.288.10 940 1096 4.0E-149 T 12-10-2018 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 SUPERFAMILY SSF56507 907 1230 4.97E-133 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Pfam PF02607 B12 binding domain 664 737 1.6E-23 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Gene3D G3DSA:3.20.20.330 6 343 8.2E-123 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Pfam PF02574 Homocysteine S-methyltransferase 22 330 8.8E-79 T 12-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 TIGRFAM TIGR02082 metH: methionine synthase 18 1196 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_0368 d10ce32c9ddeea5239c5fc5655efd20d 1231 Gene3D G3DSA:3.40.50.280 748 899 1.3E-56 T 12-10-2018 YPK_2788 839f279ac9e76dcbbce83bd0cc6cdfe8 342 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 159 339 1.2E-28 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2788 839f279ac9e76dcbbce83bd0cc6cdfe8 342 Gene3D G3DSA:1.10.3720.10 132 336 5.4E-17 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2788 839f279ac9e76dcbbce83bd0cc6cdfe8 342 SUPERFAMILY SSF161098 137 322 1.7E-18 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2788 839f279ac9e76dcbbce83bd0cc6cdfe8 342 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 11 50 1.2E-8 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 Gene3D G3DSA:3.40.50.300 4 278 1.1E-153 T 12-10-2018 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 SUPERFAMILY SSF81271 279 359 6.1E-36 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.9E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.9E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.9E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.9E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 Gene3D G3DSA:1.10.150.300 120 200 1.1E-153 T 12-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.1E-39 T 12-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 PIRSF PIRSF006641 1 363 2.2E-157 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.741 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 3.0E-174 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 SUPERFAMILY SSF52540 3 301 4.5E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 Pfam PF01926 50S ribosome-binding GTPase 5 122 1.7E-21 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_2187 6a366f01dea9f29b07f10c2fb0395016 363 Gene3D G3DSA:3.10.20.30 48 362 1.1E-153 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_0722 7e47f0a6eec7b0292eb51d7ef7be0013 102 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YPK_0722 7e47f0a6eec7b0292eb51d7ef7be0013 102 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 94 3.1E-30 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPK_0722 7e47f0a6eec7b0292eb51d7ef7be0013 102 SUPERFAMILY SSF117143 73 94 5.36E-5 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPK_0722 7e47f0a6eec7b0292eb51d7ef7be0013 102 Pfam PF00460 Flagella basal body rod protein 4 33 5.0E-9 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.6E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.6E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.6E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.6E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.6E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 Gene3D G3DSA:3.40.50.720 1 244 1.0E-85 T 12-10-2018 YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 SUPERFAMILY SSF51735 4 243 2.04E-85 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 2.3E-5 T 12-10-2018 YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 1.0E-65 T 12-10-2018 YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.7E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.7E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.7E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1686 1a3343fac073c996d9e0647deeb84e31 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 4.7E-100 T 12-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_2995 3dc8de8694f6058cfaea6533fbcdd3fb 152 Gene3D G3DSA:3.30.70.1290 3 136 9.5E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2995 3dc8de8694f6058cfaea6533fbcdd3fb 152 SUPERFAMILY SSF143422 1 129 1.01E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2995 3dc8de8694f6058cfaea6533fbcdd3fb 152 Pfam PF01797 Transposase IS200 like 12 129 3.4E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2995 3dc8de8694f6058cfaea6533fbcdd3fb 152 SMART SM01321 11 129 1.8E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3506 3dc8de8694f6058cfaea6533fbcdd3fb 152 Gene3D G3DSA:3.30.70.1290 3 136 9.5E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3506 3dc8de8694f6058cfaea6533fbcdd3fb 152 SUPERFAMILY SSF143422 1 129 1.01E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3506 3dc8de8694f6058cfaea6533fbcdd3fb 152 Pfam PF01797 Transposase IS200 like 12 129 3.4E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3506 3dc8de8694f6058cfaea6533fbcdd3fb 152 SMART SM01321 11 129 1.8E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_0846 3dc8de8694f6058cfaea6533fbcdd3fb 152 Gene3D G3DSA:3.30.70.1290 3 136 9.5E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_0846 3dc8de8694f6058cfaea6533fbcdd3fb 152 SUPERFAMILY SSF143422 1 129 1.01E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_0846 3dc8de8694f6058cfaea6533fbcdd3fb 152 Pfam PF01797 Transposase IS200 like 12 129 3.4E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_0846 3dc8de8694f6058cfaea6533fbcdd3fb 152 SMART SM01321 11 129 1.8E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3488 3dc8de8694f6058cfaea6533fbcdd3fb 152 Gene3D G3DSA:3.30.70.1290 3 136 9.5E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3488 3dc8de8694f6058cfaea6533fbcdd3fb 152 SUPERFAMILY SSF143422 1 129 1.01E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3488 3dc8de8694f6058cfaea6533fbcdd3fb 152 Pfam PF01797 Transposase IS200 like 12 129 3.4E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3488 3dc8de8694f6058cfaea6533fbcdd3fb 152 SMART SM01321 11 129 1.8E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_1679 3dc8de8694f6058cfaea6533fbcdd3fb 152 Gene3D G3DSA:3.30.70.1290 3 136 9.5E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_1679 3dc8de8694f6058cfaea6533fbcdd3fb 152 SUPERFAMILY SSF143422 1 129 1.01E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_1679 3dc8de8694f6058cfaea6533fbcdd3fb 152 Pfam PF01797 Transposase IS200 like 12 129 3.4E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_1679 3dc8de8694f6058cfaea6533fbcdd3fb 152 SMART SM01321 11 129 1.8E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2533 3dc8de8694f6058cfaea6533fbcdd3fb 152 Gene3D G3DSA:3.30.70.1290 3 136 9.5E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2533 3dc8de8694f6058cfaea6533fbcdd3fb 152 SUPERFAMILY SSF143422 1 129 1.01E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2533 3dc8de8694f6058cfaea6533fbcdd3fb 152 Pfam PF01797 Transposase IS200 like 12 129 3.4E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2533 3dc8de8694f6058cfaea6533fbcdd3fb 152 SMART SM01321 11 129 1.8E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 7 651 8.9E-185 T 12-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 Pfam PF13604 AAA domain 175 337 3.7E-32 T 12-10-2018 YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 Gene3D G3DSA:3.40.50.300 409 516 1.1E-27 T 12-10-2018 YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 Gene3D G3DSA:3.40.50.300 517 640 8.6E-28 T 12-10-2018 YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 Gene3D G3DSA:1.10.10.1020 1 114 5.3E-33 T 12-10-2018 YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 SUPERFAMILY SSF52540 300 651 5.49E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 649 51.852 T 12-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 Gene3D G3DSA:3.40.50.300 115 373 1.6E-73 T 12-10-2018 YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 SUPERFAMILY SSF52540 6 338 6.21E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1044 0b5e4551ef54215fa310877c5cd2ab5e 657 Pfam PF13538 UvrD-like helicase C-terminal domain 580 626 1.8E-15 T 12-10-2018 IPR027785 UvrD-like helicase C-terminal domain YPK_1191 d3861ff1b8f3e7303be808201d305a55 241 Pfam PF02565 Recombination protein O C terminal 83 226 5.1E-24 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 YPK_1191 d3861ff1b8f3e7303be808201d305a55 241 SUPERFAMILY SSF57863 86 173 5.75E-9 T 12-10-2018 IPR037278 ARFGAP/RecO-like zinc finger YPK_1191 d3861ff1b8f3e7303be808201d305a55 241 Pfam PF11967 Recombination protein O N terminal 4 76 1.0E-22 T 12-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal YPK_1191 d3861ff1b8f3e7303be808201d305a55 241 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 230 2.3E-38 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 YPK_1191 d3861ff1b8f3e7303be808201d305a55 241 SUPERFAMILY SSF50249 4 75 3.08E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1191 d3861ff1b8f3e7303be808201d305a55 241 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 22.902 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 YPK_1191 d3861ff1b8f3e7303be808201d305a55 241 Gene3D G3DSA:1.20.1440.120 79 236 1.6E-55 T 12-10-2018 YPK_1191 d3861ff1b8f3e7303be808201d305a55 241 Gene3D G3DSA:2.40.50.140 1 78 4.5E-33 T 12-10-2018 YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 Gene3D G3DSA:3.40.50.300 195 361 1.3E-50 T 12-10-2018 YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 Pfam PF04408 Helicase associated domain (HA2) 404 465 8.5E-13 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 SMART SM00847 403 494 1.0E-15 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 14 826 0.0 T 12-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 SUPERFAMILY SSF52540 27 354 2.11E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 PIRSF PIRSF005496 9 828 0.0 T 12-10-2018 YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 Gene3D G3DSA:3.40.50.300 3 194 3.6E-54 T 12-10-2018 YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 SMART SM00490 238 343 2.6E-15 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 Pfam PF00271 Helicase conserved C-terminal domain 220 342 1.6E-12 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 Gene3D G3DSA:1.20.120.1080 386 474 1.0E-9 T 12-10-2018 YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 Pfam PF08482 ATP-dependent helicase C-terminal 682 814 3.6E-53 T 12-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 SMART SM00487 12 201 4.6E-18 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_3464 a79995524d2aaccc55e1fef3840cfd2e 829 Pfam PF00270 DEAD/DEAH box helicase 26 177 6.7E-11 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_3378 a767ae98606c4e6d99c9c9a913ff3e95 314 Gene3D G3DSA:1.10.10.60 1 53 3.7E-17 T 12-10-2018 YPK_3378 a767ae98606c4e6d99c9c9a913ff3e95 314 SUPERFAMILY SSF100950 64 314 8.37E-65 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_3378 a767ae98606c4e6d99c9c9a913ff3e95 314 Gene3D G3DSA:3.40.50.1360 54 313 1.6E-81 T 12-10-2018 YPK_3378 a767ae98606c4e6d99c9c9a913ff3e95 314 SUPERFAMILY SSF46785 13 55 8.71E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3378 a767ae98606c4e6d99c9c9a913ff3e95 314 Pfam PF01047 MarR family 14 51 9.7E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_3378 a767ae98606c4e6d99c9c9a913ff3e95 314 Pfam PF04198 Putative sugar-binding domain 64 314 1.1E-61 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YPK_4249 9240acf8a3d6a0bb107ba66b40cbdf89 46 Pfam PF00468 Ribosomal protein L34 1 44 3.9E-23 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4249 9240acf8a3d6a0bb107ba66b40cbdf89 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 30 1.0E-10 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4249 9240acf8a3d6a0bb107ba66b40cbdf89 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.9E-26 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4249 9240acf8a3d6a0bb107ba66b40cbdf89 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.553 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4249 9240acf8a3d6a0bb107ba66b40cbdf89 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 12-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3193 0a90f638fda54c7d012b020fc46c6548 320 Gene3D G3DSA:3.40.50.1400 7 319 2.7E-90 T 12-10-2018 YPK_3193 0a90f638fda54c7d012b020fc46c6548 320 Pfam PF00762 Ferrochelatase 6 318 2.8E-107 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 YPK_3193 0a90f638fda54c7d012b020fc46c6548 320 SUPERFAMILY SSF53800 3 318 1.44E-99 T 12-10-2018 YPK_3193 0a90f638fda54c7d012b020fc46c6548 320 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 12-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 YPK_3193 0a90f638fda54c7d012b020fc46c6548 320 TIGRFAM TIGR00109 hemH: ferrochelatase 3 318 1.1E-105 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 YPK_3193 0a90f638fda54c7d012b020fc46c6548 320 Hamap MF_00323 Ferrochelatase [hemH]. 4 320 37.298 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 YPK_3193 0a90f638fda54c7d012b020fc46c6548 320 Gene3D G3DSA:3.40.50.1400 163 301 2.7E-90 T 12-10-2018 YPK_3528 c63204b4e7b1f7feba1a889b5702f39f 146 Pfam PF06610 L-alanine exporter 6 142 7.1E-72 T 12-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 YPK_3528 c63204b4e7b1f7feba1a889b5702f39f 146 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 9 142 4.0E-61 T 12-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 YPK_3528 c63204b4e7b1f7feba1a889b5702f39f 146 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 1 145 36.208 T 12-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 YPK_0552 9c2780183672ef386964a125930fc5a2 264 Gene3D G3DSA:1.20.120.530 82 228 1.3E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_0552 9c2780183672ef386964a125930fc5a2 264 SMART SM00345 13 72 1.1E-24 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_0552 9c2780183672ef386964a125930fc5a2 264 Pfam PF07729 FCD domain 95 218 7.8E-17 T 12-10-2018 IPR011711 GntR, C-terminal YPK_0552 9c2780183672ef386964a125930fc5a2 264 SUPERFAMILY SSF46785 2 76 3.32E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0552 9c2780183672ef386964a125930fc5a2 264 SUPERFAMILY SSF48008 93 226 1.05E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_0552 9c2780183672ef386964a125930fc5a2 264 Gene3D G3DSA:1.10.10.10 3 81 3.5E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0552 9c2780183672ef386964a125930fc5a2 264 SMART SM00895 95 219 2.1E-14 T 12-10-2018 IPR011711 GntR, C-terminal YPK_0552 9c2780183672ef386964a125930fc5a2 264 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.4E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_0552 9c2780183672ef386964a125930fc5a2 264 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.4E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_0552 9c2780183672ef386964a125930fc5a2 264 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 3.2E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1972 54ae5c62c54a146a89d2e87f9c2e66a4 312 SUPERFAMILY SSF103481 40 141 2.35E-13 T 12-10-2018 YPK_1972 54ae5c62c54a146a89d2e87f9c2e66a4 312 SUPERFAMILY SSF103481 187 289 2.22E-5 T 12-10-2018 YPK_1972 54ae5c62c54a146a89d2e87f9c2e66a4 312 Pfam PF00892 EamA-like transporter family 8 138 8.0E-25 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1972 54ae5c62c54a146a89d2e87f9c2e66a4 312 Pfam PF00892 EamA-like transporter family 152 286 1.6E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_3132 37aad7d651f9e1ed8f005c3ee97ec9b5 109 SUPERFAMILY SSF143737 3 107 1.57E-53 T 12-10-2018 IPR038025 Antitoxin CbeA superfamily YPK_3132 37aad7d651f9e1ed8f005c3ee97ec9b5 109 Pfam PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A 7 106 3.1E-51 T 12-10-2018 IPR009320 Antitoxin CbeA GO:0051495 YPK_3132 37aad7d651f9e1ed8f005c3ee97ec9b5 109 Gene3D G3DSA:3.30.450.20 16 109 1.3E-47 T 12-10-2018 YPK_4031 df9b355abae7e4496591115ce08afdfc 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 372 5.5E-169 T 12-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 YPK_4031 df9b355abae7e4496591115ce08afdfc 376 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 16 374 67.713 T 12-10-2018 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 YPK_4031 df9b355abae7e4496591115ce08afdfc 376 Gene3D G3DSA:3.40.50.2000 2 367 3.1E-155 T 12-10-2018 YPK_4031 df9b355abae7e4496591115ce08afdfc 376 Gene3D G3DSA:3.40.50.2000 187 356 3.1E-155 T 12-10-2018 YPK_4031 df9b355abae7e4496591115ce08afdfc 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 370 1.6E-126 T 12-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_4031 df9b355abae7e4496591115ce08afdfc 376 SUPERFAMILY SSF53756 2 372 8.17E-142 T 12-10-2018 YPK_3903 81e6bf4f025e9e487417216e070e5c4a 320 Gene3D G3DSA:2.30.330.10 230 314 6.1E-16 T 12-10-2018 IPR036429 SpoA-like superfamily YPK_3903 81e6bf4f025e9e487417216e070e5c4a 320 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 242 310 1.8E-13 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) YPK_3903 81e6bf4f025e9e487417216e070e5c4a 320 SUPERFAMILY SSF101801 242 313 8.24E-14 T 12-10-2018 IPR036429 SpoA-like superfamily YPK_3903 81e6bf4f025e9e487417216e070e5c4a 320 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 34 310 1.0E-66 T 12-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 1.3E-18 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 Gene3D G3DSA:1.10.260.40 1 61 3.1E-28 T 12-10-2018 YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 328 1.9E-149 T 12-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 304 5.4E-14 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 SMART SM00354 1 73 2.9E-31 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 Gene3D G3DSA:3.40.50.2300 62 154 6.8E-25 T 12-10-2018 YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 Gene3D G3DSA:3.40.50.2300 155 333 3.7E-28 T 12-10-2018 YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 SUPERFAMILY SSF47413 2 58 2.38E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_3529 79bd111a8f343d6b4852f24471a5a26d 336 SUPERFAMILY SSF53822 60 314 3.73E-40 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_3689 2f12514e60ce1e8ca2add5d877b4c481 292 Gene3D G3DSA:3.40.50.300 3 283 1.4E-66 T 12-10-2018 YPK_3689 2f12514e60ce1e8ca2add5d877b4c481 292 SMART SM00382 29 241 5.3E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3689 2f12514e60ce1e8ca2add5d877b4c481 292 SUPERFAMILY SSF52540 10 245 1.16E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3689 2f12514e60ce1e8ca2add5d877b4c481 292 Pfam PF00005 ABC transporter 22 191 3.1E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0737 6b957297258521e5fbabcfcbd822441d 855 SUPERFAMILY SSF55785 298 418 3.74E-16 T 12-10-2018 IPR035965 PAS domain superfamily YPK_0737 6b957297258521e5fbabcfcbd822441d 855 SUPERFAMILY SSF141868 608 847 1.23E-87 T 12-10-2018 IPR035919 EAL domain superfamily YPK_0737 6b957297258521e5fbabcfcbd822441d 855 SMART SM00052 602 844 6.8E-112 T 12-10-2018 IPR001633 EAL domain YPK_0737 6b957297258521e5fbabcfcbd822441d 855 Gene3D G3DSA:3.30.70.270 425 605 1.9E-55 T 12-10-2018 YPK_0737 6b957297258521e5fbabcfcbd822441d 855 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 305 426 8.0E-13 T 12-10-2018 IPR000014 PAS domain YPK_0737 6b957297258521e5fbabcfcbd822441d 855 SMART SM00091 308 373 1.9E-5 T 12-10-2018 IPR000014 PAS domain YPK_0737 6b957297258521e5fbabcfcbd822441d 855 Pfam PF00990 Diguanylate cyclase, GGDEF domain 432 588 6.3E-46 T 12-10-2018 IPR000160 GGDEF domain YPK_0737 6b957297258521e5fbabcfcbd822441d 855 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 427 590 1.9E-40 T 12-10-2018 IPR000160 GGDEF domain YPK_0737 6b957297258521e5fbabcfcbd822441d 855 Gene3D G3DSA:3.20.20.450 606 853 9.8E-95 T 12-10-2018 IPR035919 EAL domain superfamily YPK_0737 6b957297258521e5fbabcfcbd822441d 855 Gene3D G3DSA:3.30.450.20 298 418 4.4E-16 T 12-10-2018 YPK_0737 6b957297258521e5fbabcfcbd822441d 855 Pfam PF00989 PAS fold 308 416 7.2E-6 T 12-10-2018 IPR013767 PAS fold GO:0006355 YPK_0737 6b957297258521e5fbabcfcbd822441d 855 Pfam PF00563 EAL domain 610 839 1.7E-70 T 12-10-2018 IPR001633 EAL domain YPK_0737 6b957297258521e5fbabcfcbd822441d 855 SUPERFAMILY SSF55073 436 593 1.1E-46 T 12-10-2018 IPR029787 Nucleotide cyclase YPK_0737 6b957297258521e5fbabcfcbd822441d 855 SMART SM00267 420 592 1.0E-57 T 12-10-2018 IPR000160 GGDEF domain YPK_0737 6b957297258521e5fbabcfcbd822441d 855 Pfam PF05228 CHASE4 domain 68 227 5.0E-18 T 12-10-2018 IPR007892 CHASE4 YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 SUPERFAMILY SSF55804 500 638 9.81E-41 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 381 457 6.9E-10 T 12-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 Gene3D G3DSA:3.40.930.10 494 640 3.3E-54 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 Pfam PF02378 Phosphotransferase system, EIIC 18 278 1.1E-20 T 12-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 Gene3D G3DSA:3.40.50.2300 367 473 4.1E-36 T 12-10-2018 YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 502 637 2.2E-33 T 12-10-2018 IPR002178 PTS EIIA type-2 domain YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 543 559 - T 12-10-2018 IPR002178 PTS EIIA type-2 domain YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 SUPERFAMILY SSF52794 379 469 3.66E-23 T 12-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YPK_0026 8a7385bfb4e103b4100594e58d6c5d0d 643 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 344 6.5E-182 T 12-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00397 Sirohaem Fe-binding site signature 678 696 6.6E-6 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00397 Sirohaem Fe-binding site signature 635 653 6.6E-6 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 800 0.0 T 12-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 6.4E-11 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 6.4E-11 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 6.4E-11 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 6.4E-11 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 559 620 4.6E-11 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 Gene3D G3DSA:1.10.10.1100 422 476 9.9E-12 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 Gene3D G3DSA:3.50.50.60 110 246 6.5E-83 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PIRSF PIRSF037149 1 834 0.0 T 12-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 470 4.2E-15 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 678 694 - T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 632 756 8.8E-15 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 SUPERFAMILY SSF51905 2 310 9.61E-40 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 288 9.0E-53 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 SUPERFAMILY SSF55124 501 626 9.6E-32 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.1E-13 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 1.1E-13 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 1.1E-13 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 1.1E-13 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 Gene3D G3DSA:3.30.413.10 631 788 1.4E-30 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 SUPERFAMILY SSF56014 632 808 1.27E-45 T 12-10-2018 YPK_0235 c2c1c3b1cd6689a9d810ce0cab6db872 848 Gene3D G3DSA:3.50.50.60 8 283 6.5E-83 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3248 6388ce34e6b92dc843fc591adc4199a2 303 Gene3D G3DSA:1.10.1040.10 168 290 2.3E-44 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_3248 6388ce34e6b92dc843fc591adc4199a2 303 SUPERFAMILY SSF51735 1 167 7.99E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3248 6388ce34e6b92dc843fc591adc4199a2 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 290 4.4E-84 T 12-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 YPK_3248 6388ce34e6b92dc843fc591adc4199a2 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 168 289 3.8E-35 T 12-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain YPK_3248 6388ce34e6b92dc843fc591adc4199a2 303 SUPERFAMILY SSF48179 168 289 2.14E-35 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_3248 6388ce34e6b92dc843fc591adc4199a2 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 142 1.6E-23 T 12-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain YPK_3248 6388ce34e6b92dc843fc591adc4199a2 303 Gene3D G3DSA:3.40.50.720 1 167 2.2E-52 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 479 3.8E-24 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 3.8E-24 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 522 541 3.8E-24 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 545 557 3.8E-24 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 3.8E-24 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 313 319 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 Pfam PF00122 E1-E2 ATPase 115 288 1.1E-31 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 Gene3D G3DSA:2.70.150.20 106 212 7.0E-26 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 686 41.101 T 12-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 536 4.4E-36 T 12-10-2018 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 SUPERFAMILY SSF81665 33 305 7.85E-10 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 Gene3D G3DSA:3.40.1110.10 322 457 3.7E-55 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 SUPERFAMILY SSF56784 299 565 1.27E-38 T 12-10-2018 IPR036412 HAD-like superfamily YPK_1158 96b62738f843c2d8070697c165adbd8a 688 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 3 683 0.0 T 12-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 SUPERFAMILY SSF81653 115 207 1.7E-20 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 347 1.1E-33 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 378 610 1.3E-48 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_1158 96b62738f843c2d8070697c165adbd8a 688 SUPERFAMILY SSF81660 322 456 5.89E-37 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YPK_2540 95077f66e5ffcef324c51c8e9f1925b8 359 SUPERFAMILY SSF53807 61 342 3.45E-47 T 12-10-2018 YPK_2540 95077f66e5ffcef324c51c8e9f1925b8 359 Gene3D G3DSA:3.40.50.1980 190 351 2.7E-38 T 12-10-2018 YPK_2540 95077f66e5ffcef324c51c8e9f1925b8 359 Pfam PF01497 Periplasmic binding protein 72 311 1.1E-21 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_2540 95077f66e5ffcef324c51c8e9f1925b8 359 Gene3D G3DSA:3.40.50.1980 43 187 8.7E-37 T 12-10-2018 YPK_1405 64744f58b24acc8042f5622fa2d8459a 156 Gene3D G3DSA:2.60.120.370 1 154 1.4E-44 T 12-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily YPK_1405 64744f58b24acc8042f5622fa2d8459a 156 SUPERFAMILY SSF51197 1 154 8.79E-47 T 12-10-2018 YPK_1405 64744f58b24acc8042f5622fa2d8459a 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 153 1.5E-46 T 12-10-2018 IPR004375 YhcH/YjgK/YiaL family YPK_1405 64744f58b24acc8042f5622fa2d8459a 156 Pfam PF04074 Domain of unknown function (DUF386) 1 150 1.9E-41 T 12-10-2018 IPR004375 YhcH/YjgK/YiaL family YPK_3980 a7552cc8a8ec0e5ef82bd40f0a466252 220 Pfam PF03602 Conserved hypothetical protein 95 23 198 5.3E-62 T 12-10-2018 YPK_3980 a7552cc8a8ec0e5ef82bd40f0a466252 220 Gene3D G3DSA:3.40.50.150 11 208 2.2E-63 T 12-10-2018 YPK_3980 a7552cc8a8ec0e5ef82bd40f0a466252 220 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 135 141 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_3980 a7552cc8a8ec0e5ef82bd40f0a466252 220 PIRSF PIRSF004553 22 202 3.6E-59 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 YPK_3980 a7552cc8a8ec0e5ef82bd40f0a466252 220 SUPERFAMILY SSF53335 22 199 5.58E-54 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3980 a7552cc8a8ec0e5ef82bd40f0a466252 220 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 18 200 1.0E-64 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 YPK_0476 c9713b06b16e16978b276480aa0de074 133 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 60 127 2.1E-17 T 12-10-2018 IPR039561 Peptidase M15C GO:0008233 YPK_0476 c9713b06b16e16978b276480aa0de074 133 SUPERFAMILY SSF55166 3 129 7.85E-30 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_0476 c9713b06b16e16978b276480aa0de074 133 Gene3D G3DSA:3.30.1380.10 8 127 5.9E-23 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 SUPERFAMILY SSF51306 76 198 1.26E-38 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 Gene3D G3DSA:1.10.10.10 1 70 3.2E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 Gene3D G3DSA:2.10.109.10 80 202 7.9E-47 T 12-10-2018 YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 SUPERFAMILY SSF46785 3 69 6.36E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 Pfam PF01726 LexA DNA binding domain 1 65 2.5E-29 T 12-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 Hamap MF_00015 LexA repressor [lexA]. 3 199 32.42 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 Pfam PF00717 Peptidase S24-like 114 179 3.4E-15 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 7.4E-14 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 7.4E-14 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 7.4E-14 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 YPK_3860 24581eb8c2ba7bd79c5837445181b0d7 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 199 2.8E-83 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 YPK_2157 c906b716721ced26dd0cfa346d0d67d0 553 Gene3D G3DSA:2.40.160.50 179 552 2.4E-60 T 12-10-2018 YPK_2157 c906b716721ced26dd0cfa346d0d67d0 553 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 207 515 5.4E-85 T 12-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YPK_2157 c906b716721ced26dd0cfa346d0d67d0 553 Gene3D G3DSA:3.10.20.310 57 150 2.8E-10 T 12-10-2018 YPK_2157 c906b716721ced26dd0cfa346d0d67d0 553 Pfam PF17287 POTRA domain 152 202 4.4E-12 T 12-10-2018 IPR035251 ShlB, POTRA domain YPK_2157 c906b716721ced26dd0cfa346d0d67d0 553 Pfam PF08479 POTRA domain, ShlB-type 78 150 1.5E-18 T 12-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_2157 c906b716721ced26dd0cfa346d0d67d0 553 PIRSF PIRSF029745 4 553 1.5E-100 T 12-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 Gene3D G3DSA:2.30.110.50 13 328 1.3E-89 T 12-10-2018 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 Pfam PF05954 Phage late control gene D protein (GPD) 25 327 3.5E-71 T 12-10-2018 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 Gene3D G3DSA:3.30.1920.30 221 284 1.3E-89 T 12-10-2018 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 SUPERFAMILY SSF69255 361 447 1.12E-29 T 12-10-2018 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 Gene3D G3DSA:3.55.50.10 94 185 1.3E-89 T 12-10-2018 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 SUPERFAMILY SSF69279 190 360 1.7E-35 T 12-10-2018 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 SUPERFAMILY SSF69279 14 180 4.12E-46 T 12-10-2018 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 Gene3D G3DSA:2.40.50.230 351 453 2.6E-40 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 SUPERFAMILY SSF69349 438 536 6.75E-18 T 12-10-2018 YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 18 519 1.9E-154 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_3558 1824fd445048e551c1cfb2ccc4bb6969 782 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 17 502 3.7E-215 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_1847 74c2c601c797d1ec54296d19bfe58a05 123 Pfam PF01521 Iron-sulphur cluster biosynthesis 19 119 1.9E-19 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 YPK_1847 74c2c601c797d1ec54296d19bfe58a05 123 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 19 122 4.4E-34 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 YPK_1847 74c2c601c797d1ec54296d19bfe58a05 123 SUPERFAMILY SSF89360 19 112 1.37E-27 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YPK_1847 74c2c601c797d1ec54296d19bfe58a05 123 Gene3D G3DSA:2.60.300.12 18 123 1.1E-35 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YPK_1847 74c2c601c797d1ec54296d19bfe58a05 123 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 104 121 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 YPK_0232 17ee5b65693c33a916247d83176279ab 473 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Gene3D G3DSA:3.40.50.720 1 112 2.6E-30 T 12-10-2018 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 51.269 T 12-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Gene3D G3DSA:3.30.160.110 113 148 6.7E-20 T 12-10-2018 YPK_0232 17ee5b65693c33a916247d83176279ab 473 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 206 8.4E-71 T 12-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Pfam PF10414 Sirohaem synthase dimerisation region 150 208 5.3E-20 T 12-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 3.0E-49 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 YPK_0232 17ee5b65693c33a916247d83176279ab 473 SUPERFAMILY SSF51735 1 112 1.54E-26 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0232 17ee5b65693c33a916247d83176279ab 473 Gene3D G3DSA:1.10.8.210 149 213 2.4E-27 T 12-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Pfam PF13241 Putative NAD(P)-binding 6 115 8.9E-24 T 12-10-2018 YPK_0232 17ee5b65693c33a916247d83176279ab 473 SUPERFAMILY SSF75615 114 203 3.92E-27 T 12-10-2018 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Gene3D G3DSA:3.30.950.10 332 457 4.5E-46 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Pfam PF14824 Sirohaem biosynthesis protein central 121 145 1.1E-8 T 12-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 Gene3D G3DSA:3.40.1010.10 215 331 9.9E-44 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 YPK_0232 17ee5b65693c33a916247d83176279ab 473 PIRSF PIRSF036426 1 465 2.8E-202 T 12-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 2.7E-91 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_0232 17ee5b65693c33a916247d83176279ab 473 SUPERFAMILY SSF53790 215 460 1.7E-79 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 YPK_2253 0b6984d117f17763a181aa2688815128 546 Gene3D G3DSA:1.20.1250.20 13 200 4.4E-24 T 12-10-2018 YPK_2253 0b6984d117f17763a181aa2688815128 546 SUPERFAMILY SSF103473 16 439 3.27E-47 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2253 0b6984d117f17763a181aa2688815128 546 Pfam PF07690 Major Facilitator Superfamily 23 430 2.4E-41 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2253 0b6984d117f17763a181aa2688815128 546 Gene3D G3DSA:1.20.1250.20 278 451 8.2E-14 T 12-10-2018 YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 2.6E-52 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 Gene3D G3DSA:3.30.70.260 328 412 1.6E-32 T 12-10-2018 YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 SUPERFAMILY SSF55021 338 412 1.59E-19 T 12-10-2018 YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 SUPERFAMILY SSF51735 108 295 2.6E-57 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 SUPERFAMILY SSF52283 7 135 8.72E-49 T 12-10-2018 YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 Gene3D G3DSA:3.40.50.720 14 312 2.7E-110 T 12-10-2018 YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 Gene3D G3DSA:3.40.50.720 109 297 2.7E-110 T 12-10-2018 YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 Pfam PF01842 ACT domain 347 404 9.5E-7 T 12-10-2018 IPR002912 ACT domain YPK_0859 34c8a8a4851f96b74f168e25e85a000d 413 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 7.9E-37 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YPK_2444 8a771f8c88b18e4272932d4a91d6821f 102 Pfam PF04266 ASCH domain 6 92 3.4E-13 T 12-10-2018 IPR007374 ASCH domain YPK_2444 8a771f8c88b18e4272932d4a91d6821f 102 SUPERFAMILY SSF88697 2 100 5.3E-31 T 12-10-2018 IPR015947 PUA-like superfamily YPK_2444 8a771f8c88b18e4272932d4a91d6821f 102 PIRSF PIRSF029143 1 102 8.3E-49 T 12-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 YPK_2444 8a771f8c88b18e4272932d4a91d6821f 102 Gene3D G3DSA:2.30.130.30 1 102 1.9E-42 T 12-10-2018 YPK_2444 8a771f8c88b18e4272932d4a91d6821f 102 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 1 102 31.61 T 12-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 YPK_2444 8a771f8c88b18e4272932d4a91d6821f 102 SMART SM01022 5 101 3.1E-24 T 12-10-2018 IPR007374 ASCH domain YPK_1452 d9f31b151f76730717abf6470578e9fe 189 Pfam PF12838 4Fe-4S dicluster domain 67 118 1.0E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1452 d9f31b151f76730717abf6470578e9fe 189 Pfam PF00037 4Fe-4S binding domain 165 185 7.2E-5 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1452 d9f31b151f76730717abf6470578e9fe 189 Gene3D G3DSA:3.30.70.20 128 189 1.2E-7 T 12-10-2018 YPK_1452 d9f31b151f76730717abf6470578e9fe 189 Gene3D G3DSA:3.30.70.20 60 127 2.7E-10 T 12-10-2018 YPK_1452 d9f31b151f76730717abf6470578e9fe 189 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 170 181 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1452 d9f31b151f76730717abf6470578e9fe 189 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 68 79 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1452 d9f31b151f76730717abf6470578e9fe 189 SUPERFAMILY SSF54862 65 187 1.83E-16 T 12-10-2018 YPK_2710 22840206752f603640947e76ee026217 259 PIRSF PIRSF039085 17 259 2.3E-83 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YPK_2710 22840206752f603640947e76ee026217 259 SMART SM00382 44 235 1.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2710 22840206752f603640947e76ee026217 259 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2710 22840206752f603640947e76ee026217 259 Gene3D G3DSA:3.40.50.300 16 258 1.0E-69 T 12-10-2018 YPK_2710 22840206752f603640947e76ee026217 259 Pfam PF00005 ABC transporter 37 187 6.7E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2710 22840206752f603640947e76ee026217 259 SUPERFAMILY SSF52540 20 250 2.15E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 Gene3D G3DSA:3.90.1150.10 370 471 1.3E-11 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 SUPERFAMILY SSF53383 1 470 4.96E-126 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 Gene3D G3DSA:1.20.1340.10 1 81 2.5E-29 T 12-10-2018 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 Gene3D G3DSA:3.40.640.10 84 369 1.1E-90 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 35 402 7.2E-97 T 12-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 6 25 7.1E-43 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 47 66 7.1E-43 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 73 92 7.1E-43 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 342 357 7.1E-43 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 385 404 7.1E-43 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 113 132 7.1E-43 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 29 46 7.1E-43 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2867 f36295aab8be8b662ca0fdbfda673467 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 94 112 7.1E-43 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_0077 7cf783a2e3e1523ddc6b005bcec5639d 510 SUPERFAMILY SSF48557 3 506 1.02E-190 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 YPK_0077 7cf783a2e3e1523ddc6b005bcec5639d 510 Pfam PF00221 Aromatic amino acid lyase 11 470 4.7E-184 T 12-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 YPK_0077 7cf783a2e3e1523ddc6b005bcec5639d 510 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 12-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 YPK_0077 7cf783a2e3e1523ddc6b005bcec5639d 510 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 508 1.7E-217 T 12-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0077 7cf783a2e3e1523ddc6b005bcec5639d 510 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 43.715 T 12-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0077 7cf783a2e3e1523ddc6b005bcec5639d 510 Gene3D G3DSA:1.10.275.10 2 197 9.1E-70 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal YPK_0077 7cf783a2e3e1523ddc6b005bcec5639d 510 Gene3D G3DSA:1.20.200.10 198 509 3.3E-124 T 12-10-2018 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Pfam PF08264 Anticodon-binding domain of tRNA 701 822 5.7E-16 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.4E-51 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.4E-51 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 1.4E-51 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 1.4E-51 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.4E-51 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.4E-51 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 1.4E-51 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Gene3D G3DSA:3.10.20.590 799 860 2.9E-25 T 12-10-2018 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Gene3D G3DSA:3.40.50.620 33 566 0.0 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 SUPERFAMILY SSF52374 5 668 8.79E-140 T 12-10-2018 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 571 5.1E-6 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 652 2.6E-7 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 171 1.3E-25 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 6.2E-78 T 12-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 SUPERFAMILY SSF47323 662 859 1.64E-37 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Gene3D G3DSA:3.10.330.110 567 628 0.0 T 12-10-2018 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.375 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 Gene3D G3DSA:1.10.730.10 8 791 0.0 T 12-10-2018 YPK_3015 1d239b604f26b61220b1b8d2526de7ed 860 SUPERFAMILY SSF50677 226 415 6.49E-57 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 Gene3D G3DSA:1.10.287.950 292 595 1.3E-83 T 12-10-2018 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 SMART SM00283 347 594 1.4E-85 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 SMART SM00304 292 346 5.6E-13 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 SUPERFAMILY SSF58104 314 595 2.75E-70 T 12-10-2018 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 Pfam PF00672 HAMP domain 293 341 1.2E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 Pfam PF02743 Cache domain 44 254 4.8E-26 T 12-10-2018 IPR033479 Double Cache domain 1 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 409 561 1.7E-50 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 Gene3D G3DSA:3.30.450.20 52 265 7.4E-49 T 12-10-2018 YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 SUPERFAMILY SSF103190 64 177 7.85E-13 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily YPK_2833 00d98657f2c7b6cae630dc12fc02e46f 595 Gene3D G3DSA:3.30.450.20 64 168 7.4E-49 T 12-10-2018 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 3.1E-11 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 3.1E-11 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 3.1E-11 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 3.1E-11 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 SUPERFAMILY SSF56784 4 222 1.42E-60 T 12-10-2018 IPR036412 HAD-like superfamily YPK_0230 58b7ff28520bc9526a4d966676701a64 232 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 7 223 37.842 T 12-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 Gene3D G3DSA:3.40.50.1000 10 215 1.7E-65 T 12-10-2018 IPR023214 HAD superfamily YPK_0230 58b7ff28520bc9526a4d966676701a64 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 108 187 2.3E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 192 3.2E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 Gene3D G3DSA:1.10.150.240 22 92 1.7E-65 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 192 1.5E-36 T 12-10-2018 YPK_0230 58b7ff28520bc9526a4d966676701a64 232 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 10 221 3.5E-81 T 12-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 Gene3D G3DSA:3.40.50.1980 178 349 3.7E-55 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 238 253 5.8E-47 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 327 340 5.8E-47 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 108 126 5.8E-47 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 139 154 5.8E-47 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 262 280 5.8E-47 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 290 307 5.8E-47 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 SUPERFAMILY SSF53807 88 344 3.26E-54 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 Gene3D G3DSA:3.40.50.1980 86 175 2.3E-22 T 12-10-2018 YPK_3461 cbd5cc51f1d2627e3016f296f1afba4f 350 Pfam PF01497 Periplasmic binding protein 91 325 2.5E-44 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_3023 dcf20ecd7c57ee6e56325143eb5404fa 360 SUPERFAMILY SSF110997 286 357 3.92E-15 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YPK_3023 dcf20ecd7c57ee6e56325143eb5404fa 360 Pfam PF05036 Sporulation related domain 286 357 8.1E-16 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 YPK_3023 dcf20ecd7c57ee6e56325143eb5404fa 360 Pfam PF03330 Lytic transglycolase 78 164 1.3E-23 T 12-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain YPK_3023 dcf20ecd7c57ee6e56325143eb5404fa 360 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 3 166 22.941 T 12-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 YPK_3023 dcf20ecd7c57ee6e56325143eb5404fa 360 SUPERFAMILY SSF50685 75 164 4.19E-9 T 12-10-2018 IPR036908 RlpA-like domain superfamily YPK_3023 dcf20ecd7c57ee6e56325143eb5404fa 360 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 78 177 6.4E-35 T 12-10-2018 IPR012997 Rare lipoprotein A YPK_3023 dcf20ecd7c57ee6e56325143eb5404fa 360 Gene3D G3DSA:2.40.40.10 76 167 2.9E-32 T 12-10-2018 IPR036908 RlpA-like domain superfamily YPK_3023 dcf20ecd7c57ee6e56325143eb5404fa 360 Gene3D G3DSA:3.30.70.1070 287 359 3.9E-12 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 Pfam PF02108 Flagellar assembly protein FliH 106 229 2.3E-39 T 12-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 143 165 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 211 236 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 194 210 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 105 124 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 125 142 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 86 104 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 63 85 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 8 27 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_2393 805e118a8d8069f5cd5a4d31ca8dca2f 238 PRINTS PR01003 Flagellar assembly protein FliH signature 166 193 1.8E-73 T 12-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 YPK_3591 c9cd1fd99acefa309f436288e2cab8f7 299 Pfam PF03466 LysR substrate binding domain 98 288 7.0E-12 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_3591 c9cd1fd99acefa309f436288e2cab8f7 299 SUPERFAMILY SSF46785 1 87 2.72E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3591 c9cd1fd99acefa309f436288e2cab8f7 299 Gene3D G3DSA:3.40.190.10 99 284 1.3E-9 T 12-10-2018 YPK_3591 c9cd1fd99acefa309f436288e2cab8f7 299 Gene3D G3DSA:3.40.190.10 171 268 1.3E-9 T 12-10-2018 YPK_3591 c9cd1fd99acefa309f436288e2cab8f7 299 Gene3D G3DSA:1.10.10.10 5 95 1.2E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3591 c9cd1fd99acefa309f436288e2cab8f7 299 SUPERFAMILY SSF53850 92 290 2.95E-26 T 12-10-2018 YPK_3591 c9cd1fd99acefa309f436288e2cab8f7 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.9E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1484 428dfc7373b8ceb90ed5d550c42d3a9f 458 Pfam PF00691 OmpA family 352 450 1.7E-18 T 12-10-2018 IPR006665 OmpA-like domain YPK_1484 428dfc7373b8ceb90ed5d550c42d3a9f 458 Gene3D G3DSA:3.30.1330.60 310 457 4.6E-42 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_1484 428dfc7373b8ceb90ed5d550c42d3a9f 458 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 320 456 2.3E-51 T 12-10-2018 IPR017733 Type VI secretion system peptidoglycan-associated domain YPK_1484 428dfc7373b8ceb90ed5d550c42d3a9f 458 SUPERFAMILY SSF103088 341 456 1.06E-29 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_1484 428dfc7373b8ceb90ed5d550c42d3a9f 458 Gene3D G3DSA:1.25.40.590 83 241 2.0E-41 T 12-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YPK_1484 428dfc7373b8ceb90ed5d550c42d3a9f 458 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 86 293 2.2E-59 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU YPK_1484 428dfc7373b8ceb90ed5d550c42d3a9f 458 Pfam PF09850 Type VI secretion system protein DotU 86 289 3.1E-48 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU YPK_2293 9ed8b84d0eeabf4a2f3b5c02f7bca698 358 SUPERFAMILY SSF52200 136 238 6.41E-15 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily YPK_2293 9ed8b84d0eeabf4a2f3b5c02f7bca698 358 Pfam PF13676 TIR domain 139 240 2.2E-19 T 12-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 YPK_2293 9ed8b84d0eeabf4a2f3b5c02f7bca698 358 Gene3D G3DSA:3.40.50.10140 131 260 2.5E-16 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 SUPERFAMILY SSF55874 721 888 8.38E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 SUPERFAMILY SSF55781 510 658 8.34E-8 T 12-10-2018 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 23 231 2.1E-98 T 12-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Gene3D G3DSA:1.20.120.620 397 503 2.2E-39 T 12-10-2018 IPR038318 KdpD, transmembrane domain superfamily YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Gene3D G3DSA:3.30.565.10 735 895 1.1E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 SMART SM00387 776 886 5.7E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Gene3D G3DSA:1.10.287.130 655 734 6.2E-14 T 12-10-2018 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Gene3D G3DSA:3.40.50.300 20 230 1.3E-101 T 12-10-2018 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 846 864 2.7E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 831 841 2.7E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 813 827 2.7E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 870 883 2.7E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 SUPERFAMILY SSF47384 660 733 2.55E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Pfam PF13492 GAF domain 530 646 8.2E-12 T 12-10-2018 IPR003018 GAF domain GO:0005515 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 SUPERFAMILY SSF52402 254 361 2.09E-6 T 12-10-2018 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Pfam PF13493 Domain of unknown function (DUF4118) 404 508 2.0E-30 T 12-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 SMART SM00388 665 732 7.3E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 777 886 4.0E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Pfam PF00512 His Kinase A (phospho-acceptor) domain 666 732 2.2E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1156 581a43f7de78deea5d165146d5f6b1a0 908 Gene3D G3DSA:3.30.450.40 512 654 3.6E-36 T 12-10-2018 IPR029016 GAF-like domain superfamily YPK_1429 c2e9418e9419506b0df42d604cb91c23 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 7.5E-70 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_1429 c2e9418e9419506b0df42d604cb91c23 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 3.1E-143 T 12-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 YPK_1429 c2e9418e9419506b0df42d604cb91c23 322 Gene3D G3DSA:3.40.50.1100 12 306 4.1E-125 T 12-10-2018 YPK_1429 c2e9418e9419506b0df42d604cb91c23 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 12-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 YPK_1429 c2e9418e9419506b0df42d604cb91c23 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 311 6.2E-136 T 12-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 YPK_1429 c2e9418e9419506b0df42d604cb91c23 322 SUPERFAMILY SSF53686 4 309 1.57E-97 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_1429 c2e9418e9419506b0df42d604cb91c23 322 Gene3D G3DSA:3.40.50.1100 43 145 4.1E-125 T 12-10-2018 YPK_3897 bc1917175c3cce57f570bba1878ddd88 89 Gene3D G3DSA:3.30.110.40 17 89 1.5E-30 T 12-10-2018 IPR036868 TusA-like domain superfamily YPK_3897 bc1917175c3cce57f570bba1878ddd88 89 Pfam PF01206 Sulfurtransferase TusA 21 89 2.4E-19 T 12-10-2018 IPR001455 TusA-like domain YPK_3897 bc1917175c3cce57f570bba1878ddd88 89 SUPERFAMILY SSF64307 10 89 2.09E-24 T 12-10-2018 IPR036868 TusA-like domain superfamily YPK_3897 bc1917175c3cce57f570bba1878ddd88 89 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 22 46 - T 12-10-2018 IPR001455 TusA-like domain YPK_1146 4a69e4dbf4df20c501ae363367f193bd 115 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 20 112 4.9E-33 T 12-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 YPK_1146 4a69e4dbf4df20c501ae363367f193bd 115 Gene3D G3DSA:1.20.58.280 14 115 3.0E-36 T 12-10-2018 YPK_1146 4a69e4dbf4df20c501ae363367f193bd 115 PIRSF PIRSF000699 10 115 2.8E-39 T 12-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 YPK_1146 4a69e4dbf4df20c501ae363367f193bd 115 SUPERFAMILY SSF46973 16 113 1.44E-33 T 12-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 YPK_4015 1eb8a6ff027a61fc945c2541a2436b48 850 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 12-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 YPK_4015 1eb8a6ff027a61fc945c2541a2436b48 850 Pfam PF01295 Adenylate cyclase, class-I 228 825 1.3E-262 T 12-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 YPK_4015 1eb8a6ff027a61fc945c2541a2436b48 850 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 598 612 - T 12-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 YPK_4015 1eb8a6ff027a61fc945c2541a2436b48 850 PIRSF PIRSF001444 1 850 0.0 T 12-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 YPK_4015 1eb8a6ff027a61fc945c2541a2436b48 850 Pfam PF12633 Adenylate cyclase NT domain 5 200 9.8E-80 T 12-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 YPK_4214 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 45.724 T 12-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 YPK_4214 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 1.4E-184 T 12-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 YPK_4214 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 PIRSF PIRSF001555 1 329 4.2E-156 T 12-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 YPK_4214 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 2.5E-94 T 12-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 YPK_4214 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 SUPERFAMILY SSF55681 5 328 7.46E-99 T 12-10-2018 YPK_4214 e1ec9ebe0faf7db5dcbcf5e37e00572f 330 Gene3D G3DSA:3.30.930.10 1 330 4.3E-144 T 12-10-2018 YPK_0431 28ca3b1bff66278ec47d56b88c6ca904 329 Gene3D G3DSA:3.40.50.2300 131 268 4.2E-92 T 12-10-2018 YPK_0431 28ca3b1bff66278ec47d56b88c6ca904 329 SUPERFAMILY SSF53822 28 327 7.61E-65 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0431 28ca3b1bff66278ec47d56b88c6ca904 329 Gene3D G3DSA:3.40.50.2300 32 301 4.2E-92 T 12-10-2018 YPK_0431 28ca3b1bff66278ec47d56b88c6ca904 329 Pfam PF13407 Periplasmic binding protein domain 32 289 2.9E-53 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_0645 de2270720e42455c443eddf053f0173c 476 Pfam PF00294 pfkB family carbohydrate kinase 13 305 4.4E-51 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_0645 de2270720e42455c443eddf053f0173c 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 1.8E-126 T 12-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 YPK_0645 de2270720e42455c443eddf053f0173c 476 Pfam PF01467 Cytidylyltransferase-like 345 469 1.0E-15 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YPK_0645 de2270720e42455c443eddf053f0173c 476 SUPERFAMILY SSF53613 12 310 2.18E-55 T 12-10-2018 IPR029056 Ribokinase-like YPK_0645 de2270720e42455c443eddf053f0173c 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 6.6E-18 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YPK_0645 de2270720e42455c443eddf053f0173c 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 2.2E-63 T 12-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 YPK_0645 de2270720e42455c443eddf053f0173c 476 Gene3D G3DSA:3.40.1190.20 2 309 1.5E-109 T 12-10-2018 IPR029056 Ribokinase-like YPK_0645 de2270720e42455c443eddf053f0173c 476 Gene3D G3DSA:3.40.50.620 318 475 5.8E-39 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_0645 de2270720e42455c443eddf053f0173c 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.224 T 12-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 YPK_0645 de2270720e42455c443eddf053f0173c 476 SUPERFAMILY SSF52374 340 470 3.56E-22 T 12-10-2018 YPK_0645 de2270720e42455c443eddf053f0173c 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 Gene3D G3DSA:3.40.30.10 1 184 2.5E-63 T 12-10-2018 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 Pfam PF00255 Glutathione peroxidase 5 111 8.6E-40 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 Hamap MF_02061 Thioredoxin/glutathione peroxidase BtuE [btuE]. 3 184 51.072 T 12-10-2018 IPR033674 Thioredoxin/glutathione peroxidase BtuE KEGG: 00480+1.11.1.15+1.11.1.9|KEGG: 00590+1.11.1.9|MetaCyc: PWY-4081 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 PRINTS PR01011 Glutathione peroxidase family signature 23 40 2.6E-18 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 PRINTS PR01011 Glutathione peroxidase family signature 58 74 2.6E-18 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 PRINTS PR01011 Glutathione peroxidase family signature 143 152 2.6E-18 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 PIRSF PIRSF000303 1 184 1.9E-61 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 12-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 YPK_1829 3faa5484b37abb2499dfb8955197610a 184 SUPERFAMILY SSF52833 4 182 2.76E-54 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 Gene3D G3DSA:3.30.420.40 277 346 1.6E-5 T 12-10-2018 YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 Gene3D G3DSA:3.30.420.40 91 205 2.7E-31 T 12-10-2018 YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 Gene3D G3DSA:3.30.420.40 347 359 1.6E-5 T 12-10-2018 YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 Pfam PF13412 Winged helix-turn-helix DNA-binding 13 56 2.9E-5 T 12-10-2018 YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 Gene3D G3DSA:1.10.10.10 8 76 1.7E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 Pfam PF00480 ROK family 94 242 6.9E-18 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 SUPERFAMILY SSF46785 12 76 1.76E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 Gene3D G3DSA:3.30.420.40 206 243 2.7E-31 T 12-10-2018 YPK_2166 1a8558e8bcfededcfca443cd7bea3fac 370 SUPERFAMILY SSF53067 81 365 6.2E-32 T 12-10-2018 YPK_3271 b68d6f69a98f363394e747192adee96c 609 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 5 101 2.3E-7 T 12-10-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 YPK_3271 b68d6f69a98f363394e747192adee96c 609 PIRSF PIRSF036918 1 606 1.1E-248 T 12-10-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 YPK_3271 b68d6f69a98f363394e747192adee96c 609 SUPERFAMILY SSF51445 114 527 4.31E-92 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_3271 b68d6f69a98f363394e747192adee96c 609 SUPERFAMILY SSF51011 527 604 1.44E-8 T 12-10-2018 YPK_3271 b68d6f69a98f363394e747192adee96c 609 Pfam PF00128 Alpha amylase, catalytic domain 174 490 2.6E-75 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_3271 b68d6f69a98f363394e747192adee96c 609 SMART SM00642 124 518 4.1E-88 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_3271 b68d6f69a98f363394e747192adee96c 609 SUPERFAMILY SSF81296 11 95 3.08E-5 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_3271 b68d6f69a98f363394e747192adee96c 609 Gene3D G3DSA:3.20.20.80 113 520 3.4E-127 T 12-10-2018 YPK_3271 b68d6f69a98f363394e747192adee96c 609 Gene3D G3DSA:2.60.40.1180 522 604 1.2E-6 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta YPK_2969 824628d2578f7787a8e0db6a45862640 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_2969 824628d2578f7787a8e0db6a45862640 238 Gene3D G3DSA:3.10.20.30 1 106 1.5E-34 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_2969 824628d2578f7787a8e0db6a45862640 238 SUPERFAMILY SSF46548 107 236 9.59E-40 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_2969 824628d2578f7787a8e0db6a45862640 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 5.1E-32 T 12-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2969 824628d2578f7787a8e0db6a45862640 238 SUPERFAMILY SSF54292 1 106 4.18E-31 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_2969 824628d2578f7787a8e0db6a45862640 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 4.4E-10 T 12-10-2018 YPK_2969 824628d2578f7787a8e0db6a45862640 238 Gene3D G3DSA:1.10.1060.10 107 238 4.1E-59 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_2969 824628d2578f7787a8e0db6a45862640 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 1.1E-90 T 12-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3503 e044f31386c6a83f3dcdef3b4b30c638 206 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 189 9.8E-64 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 YPK_3503 e044f31386c6a83f3dcdef3b4b30c638 206 SUPERFAMILY SSF52540 1 190 5.23E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3503 e044f31386c6a83f3dcdef3b4b30c638 206 Gene3D G3DSA:3.40.50.300 1 206 5.5E-68 T 12-10-2018 YPK_3503 e044f31386c6a83f3dcdef3b4b30c638 206 Pfam PF01121 Dephospho-CoA kinase 3 177 1.5E-73 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 YPK_3503 e044f31386c6a83f3dcdef3b4b30c638 206 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 199 27.458 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 YPK_0335 1f1e2715f761021b0e104791c4b68765 142 SMART SM00649 9 141 1.3E-82 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 YPK_0335 1f1e2715f761021b0e104791c4b68765 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 9.7E-24 T 12-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 YPK_0335 1f1e2715f761021b0e104791c4b68765 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 12-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0335 1f1e2715f761021b0e104791c4b68765 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 9.5E-65 T 12-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0335 1f1e2715f761021b0e104791c4b68765 142 SUPERFAMILY SSF46906 68 141 3.53E-25 T 12-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YPK_0335 1f1e2715f761021b0e104791c4b68765 142 SUPERFAMILY SSF54747 3 73 2.49E-30 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YPK_0335 1f1e2715f761021b0e104791c4b68765 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 1.0E-16 T 12-10-2018 YPK_0335 1f1e2715f761021b0e104791c4b68765 142 Gene3D G3DSA:1.10.10.250 73 141 2.3E-26 T 12-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily YPK_0335 1f1e2715f761021b0e104791c4b68765 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.8E-30 T 12-10-2018 IPR020784 Ribosomal protein L11, N-terminal YPK_0335 1f1e2715f761021b0e104791c4b68765 142 Gene3D G3DSA:3.30.1550.10 2 72 2.1E-35 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily YPK_0335 1f1e2715f761021b0e104791c4b68765 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.272 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 Gene3D G3DSA:3.40.449.10 22 233 1.7E-237 T 12-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 489 9.7E-211 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 PIRSF PIRSF006294 3 539 1.0E-230 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 Gene3D G3DSA:2.170.8.10 46 349 1.7E-237 T 12-10-2018 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 SUPERFAMILY SSF53795 228 539 8.47E-129 T 12-10-2018 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 15 537 55.319 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 539 1.3E-285 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 12-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 Gene3D G3DSA:3.90.228.20 234 524 1.7E-237 T 12-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 YPK_0174 88dc80a06ab1f56a6294bdd2ed456089 539 SUPERFAMILY SSF68923 8 226 3.66E-91 T 12-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 YPK_0562 d4891a9353477c5d85f48760fb099640 395 SUPERFAMILY SSF53335 190 370 1.61E-23 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0562 d4891a9353477c5d85f48760fb099640 395 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 374 50.267 T 12-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 YPK_0562 d4891a9353477c5d85f48760fb099640 395 Gene3D G3DSA:3.40.50.150 184 380 1.5E-48 T 12-10-2018 YPK_0562 d4891a9353477c5d85f48760fb099640 395 Gene3D G3DSA:3.40.50.150 8 181 3.4E-57 T 12-10-2018 YPK_0562 d4891a9353477c5d85f48760fb099640 395 Pfam PF05175 Methyltransferase small domain 200 371 8.1E-53 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 YPK_0562 d4891a9353477c5d85f48760fb099640 395 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_0562 d4891a9353477c5d85f48760fb099640 395 PIRSF PIRSF037565 1 375 1.4E-166 T 12-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 YPK_2495 9d420d4f278717cbc7eda75ad35494cb 246 SUPERFAMILY SSF56214 130 205 3.84E-14 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YPK_2495 9d420d4f278717cbc7eda75ad35494cb 246 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 131 201 4.1E-11 T 12-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YPK_2495 9d420d4f278717cbc7eda75ad35494cb 246 PRINTS PR01399 Enterobactin synthetase component D signature 60 80 2.1E-7 T 12-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 YPK_2495 9d420d4f278717cbc7eda75ad35494cb 246 PRINTS PR01399 Enterobactin synthetase component D signature 90 108 2.1E-7 T 12-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 6.3E-22 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 Gene3D G3DSA:1.20.5.1150 16 54 2.1E-21 T 12-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0636 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 12-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3510 532c05814baab868549b0301e42181cd 154 Pfam PF06558 Secretion monitor precursor protein (SecM) 1 151 8.6E-60 T 12-10-2018 IPR009502 Secretion monitor GO:0045182 YPK_3510 532c05814baab868549b0301e42181cd 154 PIRSF PIRSF004572 1 154 7.1E-68 T 12-10-2018 IPR009502 Secretion monitor GO:0045182 YPK_3510 532c05814baab868549b0301e42181cd 154 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 1 154 7.0E-77 T 12-10-2018 IPR009502 Secretion monitor GO:0045182 YPK_3510 532c05814baab868549b0301e42181cd 154 Hamap MF_01332 Secretion monitor [secM]. 1 154 29.854 T 12-10-2018 IPR009502 Secretion monitor GO:0045182 YPK_2274 d3fde433958fced71b6350ce56c3433e 863 Gene3D G3DSA:2.60.40.2070 768 861 8.6E-15 T 12-10-2018 YPK_2274 d3fde433958fced71b6350ce56c3433e 863 Gene3D G3DSA:2.60.40.2610 677 767 5.8E-29 T 12-10-2018 YPK_2274 d3fde433958fced71b6350ce56c3433e 863 Pfam PF13953 PapC C-terminal domain 771 842 1.4E-20 T 12-10-2018 IPR025949 PapC-like, C-terminal domain YPK_2274 d3fde433958fced71b6350ce56c3433e 863 Gene3D G3DSA:2.60.40.3110 262 351 1.4E-36 T 12-10-2018 YPK_2274 d3fde433958fced71b6350ce56c3433e 863 Pfam PF00577 Outer membrane usher protein 192 762 1.2E-142 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_2274 d3fde433958fced71b6350ce56c3433e 863 Pfam PF13954 PapC N-terminal domain 34 173 7.6E-35 T 12-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YPK_2274 d3fde433958fced71b6350ce56c3433e 863 SUPERFAMILY SSF141729 31 151 1.31E-26 T 12-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YPK_2274 d3fde433958fced71b6350ce56c3433e 863 Gene3D G3DSA:3.10.20.410 31 151 4.8E-24 T 12-10-2018 YPK_2334 725d16d4b3900aaed445dece2a8dcf81 131 SUPERFAMILY SSF55166 6 125 6.28E-29 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_2334 725d16d4b3900aaed445dece2a8dcf81 131 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 58 124 7.4E-17 T 12-10-2018 IPR039561 Peptidase M15C GO:0008233 YPK_2334 725d16d4b3900aaed445dece2a8dcf81 131 Gene3D G3DSA:3.30.1380.10 7 124 3.4E-22 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_2626 4407ed531de5f95b05bd00aa61082b3f 148 PIRSF PIRSF028777 1 139 8.6E-55 T 12-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 YPK_2626 4407ed531de5f95b05bd00aa61082b3f 148 Pfam PF03733 Inner membrane component domain 77 127 2.5E-18 T 12-10-2018 IPR005185 Inner membrane component domain YPK_2626 4407ed531de5f95b05bd00aa61082b3f 148 Pfam PF03733 Inner membrane component domain 4 53 2.5E-9 T 12-10-2018 IPR005185 Inner membrane component domain YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 SMART SM00842 10 196 1.3E-96 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 1.1E-161 T 12-10-2018 IPR020823 Cell division protein FtsA YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.90.640.10 235 300 1.9E-115 T 12-10-2018 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.420.40 197 359 1.9E-115 T 12-10-2018 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.1490.110 87 169 1.9E-115 T 12-10-2018 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 3.5E-30 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.420.40 13 379 1.9E-115 T 12-10-2018 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 SUPERFAMILY SSF53067 198 384 2.13E-47 T 12-10-2018 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 SUPERFAMILY SSF53067 8 221 7.12E-62 T 12-10-2018 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 418 29.689 T 12-10-2018 IPR020823 Cell division protein FtsA YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 Pfam PF14450 Cell division protein FtsA 207 381 1.2E-24 T 12-10-2018 YPK_3514 fe46aa74b1be92432285782c6bf33bd4 418 PIRSF PIRSF003101 1 418 1.2E-153 T 12-10-2018 IPR020823 Cell division protein FtsA YPK_2458 cff56f3593e6887dd771fd267c44f4d0 285 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 279 2.0E-79 T 12-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 YPK_2458 cff56f3593e6887dd771fd267c44f4d0 285 Gene3D G3DSA:3.40.830.10 1 284 2.5E-80 T 12-10-2018 YPK_2458 cff56f3593e6887dd771fd267c44f4d0 285 TIGRFAM TIGR02298 HpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1 281 5.2E-155 T 12-10-2018 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase GO:0008687 KEGG: 00350+1.13.11.15 YPK_2458 cff56f3593e6887dd771fd267c44f4d0 285 SUPERFAMILY SSF53213 12 279 9.02E-46 T 12-10-2018 YPK_3188 64f24c9928614ffba0826f97b5a51e30 285 Gene3D G3DSA:3.40.50.720 3 215 1.8E-32 T 12-10-2018 YPK_3188 64f24c9928614ffba0826f97b5a51e30 285 SUPERFAMILY SSF51735 1 283 4.89E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3188 64f24c9928614ffba0826f97b5a51e30 285 Gene3D G3DSA:3.90.25.10 153 280 1.8E-32 T 12-10-2018 YPK_3188 64f24c9928614ffba0826f97b5a51e30 285 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 215 9.9E-26 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_0560 f2e69ba2d1b39804de49bf43176175ae 169 Gene3D G3DSA:3.30.2010.10 55 161 1.1E-7 T 12-10-2018 YPK_0560 f2e69ba2d1b39804de49bf43176175ae 169 Pfam PF01863 Protein of unknown function DUF45 46 149 1.9E-11 T 12-10-2018 IPR002725 Protein of unknown function DUF45 YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 SUPERFAMILY SSF53706 10 627 1.09E-153 T 12-10-2018 YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 Gene3D G3DSA:3.90.55.10 10 558 7.1E-194 T 12-10-2018 YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 Gene3D G3DSA:3.40.50.740 52 517 7.1E-194 T 12-10-2018 YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 Pfam PF00384 Molybdopterin oxidoreductase 52 508 1.2E-58 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 SUPERFAMILY SSF50692 618 750 2.69E-32 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 Pfam PF01568 Molydopterin dinucleotide binding domain 625 745 1.3E-23 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 Gene3D G3DSA:2.40.40.20 599 753 2.8E-38 T 12-10-2018 YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 453 470 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YPK_1026 ba98aa076e4665876c34f2cac62e22e0 753 Gene3D G3DSA:3.40.228.10 145 591 7.1E-194 T 12-10-2018 YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 Gene3D G3DSA:3.40.50.300 503 689 6.5E-20 T 12-10-2018 YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 Pfam PF06733 DEAD_2 199 263 2.9E-7 T 12-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 Pfam PF13307 Helicase C-terminal domain 534 688 5.1E-24 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 SUPERFAMILY SSF52540 15 672 6.14E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 SMART SM00487 23 307 0.0016 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 SMART SM00488 18 294 0.0035 T 12-10-2018 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 SMART SM00491 545 677 2.9E-32 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 Gene3D G3DSA:3.40.50.300 26 287 1.8E-39 T 12-10-2018 YPK_2856 0a2405c5166ed03fb14226fde1073b4c 726 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 34 696 34.555 T 12-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 YPK_2847 43fe6b1ccc82963b02cfcdbdeabf8f46 242 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 9.0E-89 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 YPK_2847 43fe6b1ccc82963b02cfcdbdeabf8f46 242 SUPERFAMILY SSF53335 18 235 3.34E-44 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2847 43fe6b1ccc82963b02cfcdbdeabf8f46 242 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 16 240 37.402 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 YPK_2847 43fe6b1ccc82963b02cfcdbdeabf8f46 242 Pfam PF13489 Methyltransferase domain 58 192 4.3E-25 T 12-10-2018 YPK_2847 43fe6b1ccc82963b02cfcdbdeabf8f46 242 Gene3D G3DSA:3.40.50.150 16 240 6.8E-75 T 12-10-2018 YPK_1871 55f391cf91c1fec2f03a88caf6e7eb1d 365 Gene3D G3DSA:3.20.20.70 3 365 5.0E-143 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1871 55f391cf91c1fec2f03a88caf6e7eb1d 365 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 344 1.8E-93 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 YPK_1871 55f391cf91c1fec2f03a88caf6e7eb1d 365 SUPERFAMILY SSF51395 1 365 4.45E-125 T 12-10-2018 YPK_4080 b00f288991552a5971333049b6c74594 243 Gene3D G3DSA:3.40.30.10 171 242 3.0E-25 T 12-10-2018 YPK_4080 b00f288991552a5971333049b6c74594 243 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 241 9.5E-40 T 12-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 YPK_4080 b00f288991552a5971333049b6c74594 243 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 12-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 YPK_4080 b00f288991552a5971333049b6c74594 243 Pfam PF08534 Redoxin 5 160 6.5E-33 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 YPK_4080 b00f288991552a5971333049b6c74594 243 SUPERFAMILY SSF52833 2 242 2.17E-46 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_4080 b00f288991552a5971333049b6c74594 243 Gene3D G3DSA:3.40.30.10 4 165 3.1E-62 T 12-10-2018 YPK_4080 b00f288991552a5971333049b6c74594 243 PRINTS PR00160 Glutaredoxin signature 173 191 3.8E-15 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_4080 b00f288991552a5971333049b6c74594 243 PRINTS PR00160 Glutaredoxin signature 228 241 3.8E-15 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_4080 b00f288991552a5971333049b6c74594 243 PRINTS PR00160 Glutaredoxin signature 214 227 3.8E-15 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_4080 b00f288991552a5971333049b6c74594 243 Pfam PF00462 Glutaredoxin 173 231 1.1E-19 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 SMART SM00091 245 311 3.0E-7 T 12-10-2018 IPR000014 PAS domain YPK_2908 f55200b54c74399ca035e6512cfb400a 604 Pfam PF00512 His Kinase A (phospho-acceptor) domain 372 432 3.5E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 SUPERFAMILY SSF47384 363 433 4.51E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 SUPERFAMILY SSF55785 257 364 5.52E-14 T 12-10-2018 IPR035965 PAS domain superfamily YPK_2908 f55200b54c74399ca035e6512cfb400a 604 PRINTS PR00344 Bacterial sensor protein C-terminal signature 569 582 4.0E-17 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 530 4.0E-17 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 563 4.0E-17 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 544 4.0E-17 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 244 361 1.3E-12 T 12-10-2018 IPR000014 PAS domain YPK_2908 f55200b54c74399ca035e6512cfb400a 604 SMART SM00387 478 585 1.0E-33 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2908 f55200b54c74399ca035e6512cfb400a 604 Gene3D G3DSA:1.10.287.130 358 434 3.2E-19 T 12-10-2018 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 Pfam PF00989 PAS fold 249 352 1.1E-8 T 12-10-2018 IPR013767 PAS fold GO:0006355 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 SMART SM00388 370 436 8.3E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 Pfam PF17203 Single cache domain 3 74 119 4.3E-7 T 12-10-2018 IPR033463 Single cache domain 3 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 SUPERFAMILY SSF55874 427 586 7.33E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2908 f55200b54c74399ca035e6512cfb400a 604 SUPERFAMILY SSF103190 37 159 7.85E-12 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily YPK_2908 f55200b54c74399ca035e6512cfb400a 604 Gene3D G3DSA:3.30.450.20 234 357 2.6E-17 T 12-10-2018 YPK_2908 f55200b54c74399ca035e6512cfb400a 604 Gene3D G3DSA:3.30.565.10 437 591 8.8E-46 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2908 f55200b54c74399ca035e6512cfb400a 604 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 583 4.9E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Pfam PF00703 Glycosyl hydrolases family 2 228 349 3.1E-11 T 12-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 PRINTS PR00132 Glycosyl hydrolase family 2 signature 360 374 1.0E-37 T 12-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 PRINTS PR00132 Glycosyl hydrolase family 2 signature 154 169 1.0E-37 T 12-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 PRINTS PR00132 Glycosyl hydrolase family 2 signature 463 478 1.0E-37 T 12-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 PRINTS PR00132 Glycosyl hydrolase family 2 signature 391 409 1.0E-37 T 12-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 PRINTS PR00132 Glycosyl hydrolase family 2 signature 547 562 1.0E-37 T 12-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Gene3D G3DSA:3.20.20.80 350 638 3.8E-124 T 12-10-2018 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 401 426 - T 12-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Gene3D G3DSA:2.70.98.10 776 1065 1.7E-88 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 SUPERFAMILY SSF74650 778 1062 1.88E-91 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Gene3D G3DSA:2.60.40.10 641 747 7.5E-22 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 61 226 3.4E-64 T 12-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 SUPERFAMILY SSF51445 351 638 3.63E-99 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 SUPERFAMILY SSF49785 22 226 3.12E-70 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Gene3D G3DSA:2.60.40.10 227 349 3.0E-21 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 463 477 - T 12-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 SMART SM01038 790 1063 8.9E-119 T 12-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 SUPERFAMILY SSF49303 637 746 2.7E-28 T 12-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 351 644 1.3E-113 T 12-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Gene3D G3DSA:2.60.120.260 12 226 3.0E-80 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Hamap MF_01687 Beta-galactosidase [lacZ]. 13 1065 17.76 T 12-10-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 SUPERFAMILY SSF49303 228 349 1.67E-20 T 12-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Pfam PF02929 Beta galactosidase small chain 795 1060 3.1E-58 T 12-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_1739 728183382c20dae002f3a554dfc6fe3f 1066 Pfam PF16353 Domain of unknown function(DUF4981) 655 743 2.9E-15 T 12-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_0224 c1269965455db5e55017bc82d6141dbb 460 Gene3D G3DSA:3.30.1370.120 168 228 4.9E-8 T 12-10-2018 IPR038591 NolW-like superfamily YPK_0224 c1269965455db5e55017bc82d6141dbb 460 Pfam PF00263 Bacterial type II and III secretion system protein 299 458 2.6E-46 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 YPK_0224 c1269965455db5e55017bc82d6141dbb 460 PRINTS PR01032 Gene IV protein signature 439 460 1.3E-10 T 12-10-2018 YPK_0224 c1269965455db5e55017bc82d6141dbb 460 PRINTS PR01032 Gene IV protein signature 320 343 1.3E-10 T 12-10-2018 YPK_0224 c1269965455db5e55017bc82d6141dbb 460 PRINTS PR01032 Gene IV protein signature 386 414 1.3E-10 T 12-10-2018 YPK_0224 c1269965455db5e55017bc82d6141dbb 460 PRINTS PR01032 Gene IV protein signature 279 302 1.3E-10 T 12-10-2018 YPK_0224 c1269965455db5e55017bc82d6141dbb 460 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 72 458 1.5E-121 T 12-10-2018 IPR013355 Type IV pilus secretin PilQ YPK_0224 c1269965455db5e55017bc82d6141dbb 460 Pfam PF03958 Bacterial type II/III secretion system short domain 168 229 1.3E-11 T 12-10-2018 IPR005644 NolW-like YPK_0224 c1269965455db5e55017bc82d6141dbb 460 PRINTS PR00811 Bacterial general secretion pathway protein D signature 423 441 1.7E-14 T 12-10-2018 IPR001775 GspD/PilQ family YPK_0224 c1269965455db5e55017bc82d6141dbb 460 PRINTS PR00811 Bacterial general secretion pathway protein D signature 446 460 1.7E-14 T 12-10-2018 IPR001775 GspD/PilQ family YPK_0224 c1269965455db5e55017bc82d6141dbb 460 PRINTS PR00811 Bacterial general secretion pathway protein D signature 295 319 1.7E-14 T 12-10-2018 IPR001775 GspD/PilQ family YPK_0224 c1269965455db5e55017bc82d6141dbb 460 Gene3D G3DSA:3.55.50.30 47 167 1.9E-25 T 12-10-2018 YPK_1010 7549869ef1cdb5972cab15e9b330270c 198 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 8 196 3.2E-31 T 12-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 YPK_1010 7549869ef1cdb5972cab15e9b330270c 198 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 29 8.3E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1010 7549869ef1cdb5972cab15e9b330270c 198 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 28 7.7E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1010 7549869ef1cdb5972cab15e9b330270c 198 SUPERFAMILY SSF54523 47 197 1.41E-33 T 12-10-2018 YPK_1010 7549869ef1cdb5972cab15e9b330270c 198 Gene3D G3DSA:3.10.610.10 39 149 3.0E-8 T 12-10-2018 YPK_1010 7549869ef1cdb5972cab15e9b330270c 198 Gene3D G3DSA:2.10.70.20 151 198 8.6E-9 T 12-10-2018 YPK_1010 7549869ef1cdb5972cab15e9b330270c 198 Pfam PF11612 Type II secretion system (T2SS), protein J 59 193 3.8E-23 T 12-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 YPK_2335 c070100930b7c7804f0968e59d5bb6a8 140 TIGRFAM TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family 10 135 3.0E-48 T 12-10-2018 IPR020000 Bacteriophage P2, LysB YPK_2218 506cd0f2e652709744af2d7faeb23445 661 Gene3D G3DSA:3.60.120.10 154 346 2.5E-7 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_2218 506cd0f2e652709744af2d7faeb23445 661 Gene3D G3DSA:3.60.120.10 347 657 1.6E-44 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_2218 506cd0f2e652709744af2d7faeb23445 661 Pfam PF00425 chorismate binding enzyme 397 643 5.5E-40 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YPK_2218 506cd0f2e652709744af2d7faeb23445 661 SUPERFAMILY SSF56322 149 653 1.15E-44 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 PIRSF PIRSF002764 1 219 4.9E-88 T 12-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 5 215 1.6E-96 T 12-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 Pfam PF03379 CcmB protein 3 216 4.6E-93 T 12-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 7.3E-73 T 12-10-2018 YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 7.3E-73 T 12-10-2018 YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 7.3E-73 T 12-10-2018 YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 7.3E-73 T 12-10-2018 YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 7.3E-73 T 12-10-2018 YPK_1497 3c62885123e84e23ec2983e4f93724f2 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 7.3E-73 T 12-10-2018 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 SMART SM00863 653 696 9.0E-21 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Gene3D G3DSA:3.30.980.10 563 697 2.5E-52 T 12-10-2018 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 SUPERFAMILY SSF55186 552 711 7.98E-53 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 SUPERFAMILY SSF101353 256 464 1.44E-60 T 12-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 306 319 2.1E-33 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 236 249 2.1E-33 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 2.1E-33 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 282 298 2.1E-33 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 209 220 2.1E-33 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Pfam PF01411 tRNA synthetases class II (A) 7 553 3.9E-233 T 12-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 SUPERFAMILY SSF50447 456 552 1.07E-18 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 696 4.0E-17 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Pfam PF02272 DHHA1 domain 733 871 2.4E-30 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Gene3D G3DSA:3.30.930.10 2 252 6.7E-123 T 12-10-2018 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 SUPERFAMILY SSF55681 4 255 4.22E-108 T 12-10-2018 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 875 206.049 T 12-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 854 0.0 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Gene3D G3DSA:3.30.54.20 624 677 2.5E-52 T 12-10-2018 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Gene3D G3DSA:2.40.30.130 462 562 8.1E-10 T 12-10-2018 YPK_3373 51d3f581e163a6e5983263c3de283fd0 875 Gene3D G3DSA:3.10.310.40 764 872 3.9E-36 T 12-10-2018 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 5 411 1.6E-101 T 12-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 SUPERFAMILY SSF50993 1 413 3.92E-91 T 12-10-2018 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 SUPERFAMILY SSF53474 421 662 4.32E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 Pfam PF00326 Prolyl oligopeptidase family 470 681 4.5E-70 T 12-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 Gene3D G3DSA:3.40.50.1820 23 679 6.7E-252 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 Gene3D G3DSA:2.130.10.120 74 412 6.7E-252 T 12-10-2018 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 479 503 9.1E-53 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 507 526 9.1E-53 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 613 635 9.1E-53 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 537 557 9.1E-53 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 453 471 9.1E-53 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YPK_2442 fb1314f9c69db27e45abeb0da603c81f 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 595 610 9.1E-53 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 YPK_3826 dff71fdd4cc4c9250306222190d8bad3 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 3.6E-142 T 12-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YPK_3826 dff71fdd4cc4c9250306222190d8bad3 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 3.8E-195 T 12-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YPK_3826 dff71fdd4cc4c9250306222190d8bad3 433 PIRSF PIRSF004539 1 433 4.4E-176 T 12-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 113 132 2.3E-30 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 2.3E-30 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 2.3E-30 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 88 104 2.3E-30 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 Gene3D G3DSA:3.40.1550.10 43 232 6.0E-56 T 12-10-2018 IPR028976 CheC-like superfamily YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 320 9.0E-15 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 SUPERFAMILY SSF101801 249 322 2.09E-11 T 12-10-2018 IPR036429 SpoA-like superfamily YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 Pfam PF02154 Flagellar motor switch protein FliM 37 230 3.0E-74 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 SUPERFAMILY SSF103039 48 230 9.94E-20 T 12-10-2018 IPR028976 CheC-like superfamily YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 320 9.0E-109 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YPK_2399 fbbd5e29c0d2a5a4ba26d37a11efe6ee 333 PIRSF PIRSF002888 2 330 3.6E-93 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 YPK_2350 2fb1a026602b4a6156a653eacaa07692 971 Pfam PF10145 Phage-related minor tail protein 247 435 7.4E-44 T 12-10-2018 IPR010090 Phage tail tape measure protein YPK_2350 2fb1a026602b4a6156a653eacaa07692 971 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 200 544 9.5E-88 T 12-10-2018 IPR010090 Phage tail tape measure protein YPK_1422 c3d461541e39239791d8a3814b7054dd 678 SMART SM00382 39 226 2.1E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1422 c3d461541e39239791d8a3814b7054dd 678 Pfam PF02687 FtsX-like permease family 583 671 4.8E-9 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YPK_1422 c3d461541e39239791d8a3814b7054dd 678 Gene3D G3DSA:3.40.50.300 8 297 3.3E-70 T 12-10-2018 YPK_1422 c3d461541e39239791d8a3814b7054dd 678 Pfam PF00005 ABC transporter 30 178 3.7E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1422 c3d461541e39239791d8a3814b7054dd 678 Pfam PF12704 MacB-like periplasmic core domain 302 519 6.5E-39 T 12-10-2018 IPR025857 MacB-like periplasmic core domain YPK_1422 c3d461541e39239791d8a3814b7054dd 678 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1422 c3d461541e39239791d8a3814b7054dd 678 SUPERFAMILY SSF52540 10 241 2.13E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 SUPERFAMILY SSF50104 6 64 5.78E-18 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 SUPERFAMILY SSF50249 67 128 2.61E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 SUPERFAMILY SSF50249 130 187 1.25E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 12-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 7 62 6.8E-24 T 12-10-2018 IPR013185 Translation elongation factor, KOW-like YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 Gene3D G3DSA:2.40.50.140 130 188 4.5E-28 T 12-10-2018 YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 Gene3D G3DSA:2.30.30.30 1 65 5.9E-27 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 PIRSF PIRSF005901 2 188 3.7E-66 T 12-10-2018 IPR020599 Translation elongation factor P/YeiP YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 2.8E-76 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 49.817 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 Gene3D G3DSA:2.40.50.140 66 129 6.1E-30 T 12-10-2018 YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 SMART SM01185 69 123 2.3E-25 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 5.2E-26 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 5.9E-22 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 YPK_3818 58cd7022ddf1a6e46315783910d450ef 188 SMART SM00841 131 186 9.5E-33 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 YPK_2876 d21ab30da75a2549704589fbd5ded87d 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 271 5.2E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2876 d21ab30da75a2549704589fbd5ded87d 286 SUPERFAMILY SSF161098 88 274 5.49E-34 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2876 d21ab30da75a2549704589fbd5ded87d 286 Gene3D G3DSA:1.10.3720.10 87 284 1.9E-33 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2876 d21ab30da75a2549704589fbd5ded87d 286 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 16 282 2.5E-85 T 12-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 YPK_1836 22fb89af46f4ced38133938c6514ad33 114 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 2 114 31.325 T 12-10-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE YPK_1836 22fb89af46f4ced38133938c6514ad33 114 SUPERFAMILY SSF103481 35 113 1.03E-14 T 12-10-2018 YPK_1836 22fb89af46f4ced38133938c6514ad33 114 Pfam PF00892 EamA-like transporter family 35 111 6.7E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1836 22fb89af46f4ced38133938c6514ad33 114 Gene3D G3DSA:1.10.3730.20 1 113 5.5E-7 T 12-10-2018 YPK_3245 b1d095d7abde1282fc5c84108e80ec16 295 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 281 2.3E-91 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 YPK_3245 b1d095d7abde1282fc5c84108e80ec16 295 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 18.338 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 YPK_3245 b1d095d7abde1282fc5c84108e80ec16 295 Gene3D G3DSA:1.10.357.140 13 181 1.7E-18 T 12-10-2018 YPK_3245 b1d095d7abde1282fc5c84108e80ec16 295 Pfam PF01040 UbiA prenyltransferase family 18 266 2.1E-59 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 YPK_3245 b1d095d7abde1282fc5c84108e80ec16 295 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 56 78 - T 12-10-2018 IPR030470 UbiA prenyltransferase conserved site YPK_0336 8938e3e805f49d50d98e34fe67ae0752 234 Gene3D G3DSA:3.40.50.790 68 159 9.7E-81 T 12-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YPK_0336 8938e3e805f49d50d98e34fe67ae0752 234 Gene3D G3DSA:3.30.190.20 25 222 9.7E-81 T 12-10-2018 YPK_0336 8938e3e805f49d50d98e34fe67ae0752 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.367 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 YPK_0336 8938e3e805f49d50d98e34fe67ae0752 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 12-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0336 8938e3e805f49d50d98e34fe67ae0752 234 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.5E-51 T 12-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YPK_0336 8938e3e805f49d50d98e34fe67ae0752 234 PIRSF PIRSF002155 1 227 6.0E-78 T 12-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0336 8938e3e805f49d50d98e34fe67ae0752 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 6.5E-107 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 YPK_0336 8938e3e805f49d50d98e34fe67ae0752 234 SUPERFAMILY SSF56808 6 225 1.83E-82 T 12-10-2018 IPR023674 Ribosomal protein L1-like YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 SUPERFAMILY SSF101967 195 340 1.96E-20 T 12-10-2018 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 SUPERFAMILY SSF101967 365 501 1.11E-18 T 12-10-2018 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 SUPERFAMILY SSF101967 526 616 9.15E-20 T 12-10-2018 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 594 632 2.3E-10 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 481 519 1.7E-5 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 156 182 2.0E-4 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 318 358 6.5E-10 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Gene3D G3DSA:2.150.10.10 240 371 2.6E-27 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Gene3D G3DSA:2.150.10.10 375 529 4.5E-31 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Gene3D G3DSA:3.30.1300.30 615 716 9.2E-29 T 12-10-2018 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Gene3D G3DSA:2.60.40.4050 530 594 2.1E-16 T 12-10-2018 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Gene3D G3DSA:2.150.10.10 83 181 3.9E-5 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Pfam PF03895 YadA-like membrane anchor domain 657 716 1.8E-15 T 12-10-2018 IPR005594 YadA-like, C-terminal YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 SUPERFAMILY SSF54523 605 716 2.98E-23 T 12-10-2018 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Pfam PF05658 Head domain of trimeric autotransporter adhesin 257 283 5.2E-4 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_0871 7ee06fee59cb50915d975f2234ce6ad8 716 Pfam PF05658 Head domain of trimeric autotransporter adhesin 416 442 1.1E-4 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 11 791 0.0 T 12-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 SUPERFAMILY SSF52009 351 469 7.98E-36 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 Gene3D G3DSA:3.30.1490.20 8 198 4.7E-70 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 SUPERFAMILY SSF51621 470 792 3.4E-97 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 Gene3D G3DSA:3.30.470.20 199 360 1.8E-59 T 12-10-2018 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 350 4.2E-117 T 12-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 Pfam PF00391 PEP-utilising enzyme, mobile domain 387 458 7.1E-27 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 485 790 3.8E-60 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 SUPERFAMILY SSF56059 10 387 2.94E-106 T 12-10-2018 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 417 428 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 Gene3D G3DSA:3.20.20.60 481 793 3.6E-100 T 12-10-2018 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 697 715 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 PIRSF PIRSF000854 6 794 0.0 T 12-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 YPK_1843 5437b08f4b94821e8d6d836728510ceb 794 Gene3D G3DSA:3.50.30.10 364 480 4.4E-41 T 12-10-2018 YPK_1202 69d4a8a7f2a17d58162d5b6d7b48cf73 89 Gene3D G3DSA:3.40.1350.10 4 87 4.4E-29 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 YPK_1202 69d4a8a7f2a17d58162d5b6d7b48cf73 89 SMART SM00990 4 84 1.4E-17 T 12-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 Pfam PF02779 Transketolase, pyrimidine binding domain 320 479 9.4E-40 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 SUPERFAMILY SSF52518 9 381 3.93E-76 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 619 0.0 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 619 46.2 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 SMART SM00861 319 483 1.1E-67 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 5.1E-117 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 Gene3D G3DSA:3.40.50.970 316 487 1.2E-68 T 12-10-2018 YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 SUPERFAMILY SSF52922 490 618 3.8E-33 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 Gene3D G3DSA:3.40.50.920 494 619 2.6E-45 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 12-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 Pfam PF02780 Transketolase, C-terminal domain 494 610 6.4E-26 T 12-10-2018 IPR033248 Transketolase, C-terminal domain YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 SUPERFAMILY SSF52518 316 503 3.84E-61 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3253 ab997ce8b8422b2fd9dd6a3d14e6a482 619 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 Pfam PF00005 ABC transporter 303 454 1.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 Pfam PF00005 ABC transporter 27 185 2.3E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 260 3.7E-4 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 SUPERFAMILY SSF52540 6 257 1.38E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 SMART SM00382 35 235 1.0E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 SMART SM00382 312 502 6.4E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 Gene3D G3DSA:3.40.50.300 4 274 5.4E-78 T 12-10-2018 YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 Gene3D G3DSA:3.40.50.300 275 529 3.5E-81 T 12-10-2018 YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 SUPERFAMILY SSF52540 279 525 6.35E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2789 b9dd318d9bc19ee0e3209e2ffaffe8dc 530 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 Gene3D G3DSA:1.10.3210.10 311 519 1.6E-87 T 12-10-2018 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 SUPERFAMILY SSF53067 138 311 1.13E-47 T 12-10-2018 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 Gene3D G3DSA:3.30.420.150 118 296 2.6E-97 T 12-10-2018 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 SUPERFAMILY SSF109604 314 507 8.63E-55 T 12-10-2018 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 13 307 3.2E-101 T 12-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 PIRSF PIRSF001267 4 507 2.0E-203 T 12-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 SUPERFAMILY SSF53067 14 134 4.98E-37 T 12-10-2018 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 Gene3D G3DSA:3.30.420.40 15 304 2.6E-97 T 12-10-2018 YPK_1343 9debccb20f1d1c51c19e4e6aa2b05559 519 Pfam PF02541 Ppx/GppA phosphatase family 27 309 1.6E-98 T 12-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 YPK_2798 7c256689a7e11381144d3c0de77e31c1 598 Pfam PF00884 Sulfatase 260 512 1.6E-25 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YPK_2798 7c256689a7e11381144d3c0de77e31c1 598 Gene3D G3DSA:3.40.720.10 249 522 1.7E-36 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_2798 7c256689a7e11381144d3c0de77e31c1 598 Pfam PF11893 Domain of unknown function (DUF3413) 6 252 1.5E-107 T 12-10-2018 IPR024588 Inner membrane protein YejM, N-terminal YPK_2798 7c256689a7e11381144d3c0de77e31c1 598 SUPERFAMILY SSF53649 256 582 4.51E-50 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_2798 7c256689a7e11381144d3c0de77e31c1 598 PIRSF PIRSF004950 6 598 5.3E-244 T 12-10-2018 IPR012159 Inner membrane protein YejM YPK_0430 fa2b195855540b207d426bab3c0d74aa 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 306 2.8E-136 T 12-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 YPK_0430 fa2b195855540b207d426bab3c0d74aa 306 PIRSF PIRSF026649 3 306 9.0E-93 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YPK_0430 fa2b195855540b207d426bab3c0d74aa 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 6 297 1.4E-101 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YPK_0430 fa2b195855540b207d426bab3c0d74aa 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 50.425 T 12-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 YPK_0430 fa2b195855540b207d426bab3c0d74aa 306 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 3 306 68.758 T 12-10-2018 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 YPK_3955 54ad7e81dcd7dbff3ce0b6d1f8c19a90 400 Gene3D G3DSA:1.10.260.40 9 69 1.9E-13 T 12-10-2018 YPK_3955 54ad7e81dcd7dbff3ce0b6d1f8c19a90 400 Pfam PF06114 IrrE N-terminal-like domain 165 281 2.7E-14 T 12-10-2018 IPR010359 IrrE N-terminal-like domain YPK_3955 54ad7e81dcd7dbff3ce0b6d1f8c19a90 400 SMART SM00530 12 67 1.8E-8 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_3955 54ad7e81dcd7dbff3ce0b6d1f8c19a90 400 Pfam PF13560 Helix-turn-helix domain 11 64 1.8E-8 T 12-10-2018 YPK_3955 54ad7e81dcd7dbff3ce0b6d1f8c19a90 400 SUPERFAMILY SSF47413 10 71 5.35E-12 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 Pfam PF00771 FHIPEP family 31 681 2.0E-267 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 PIRSF PIRSF005419 15 692 6.7E-241 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 6.2E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 6.2E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 6.2E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 6.2E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 6.2E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 6.2E-56 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 12-10-2018 IPR025505 FHIPEP conserved site YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 Gene3D G3DSA:1.10.8.540 505 593 1.1E-29 T 12-10-2018 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 689 8.9E-278 T 12-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 Gene3D G3DSA:1.10.490.80 596 689 5.7E-8 T 12-10-2018 YPK_2431 3fc1eb0579d28ab0508bad4767a8f5ec 692 Gene3D G3DSA:3.40.30.60 361 504 1.2E-51 T 12-10-2018 YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 Gene3D G3DSA:3.20.20.80 2 399 1.8E-142 T 12-10-2018 YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 Pfam PF08533 Beta-galactosidase C-terminal domain 626 682 1.2E-15 T 12-10-2018 IPR013739 Beta-galactosidase C-terminal GO:0004565|GO:0006012 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 Gene3D G3DSA:2.60.40.1180 624 686 9.4E-19 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 PIRSF PIRSF001084 6 684 6.1E-249 T 12-10-2018 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 Pfam PF08532 Beta-galactosidase trimerisation domain 403 615 5.7E-79 T 12-10-2018 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 Pfam PF02449 Beta-galactosidase 19 392 3.6E-159 T 12-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 Gene3D G3DSA:3.40.50.880 400 623 5.3E-69 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 SUPERFAMILY SSF51445 13 372 6.02E-119 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0973 a692814ac45ff6bcfaf6acbbd6a62232 686 SUPERFAMILY SSF52317 400 615 5.04E-62 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 SUPERFAMILY SSF46689 236 286 1.57E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 Gene3D G3DSA:2.60.120.280 12 174 2.7E-58 T 12-10-2018 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 SUPERFAMILY SSF46689 182 232 5.55E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 236 278 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 Gene3D G3DSA:1.10.10.60 178 288 3.5E-27 T 12-10-2018 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 SUPERFAMILY SSF51215 12 171 1.83E-29 T 12-10-2018 IPR037923 Transcription regulator HTH-like YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 Pfam PF12833 Helix-turn-helix domain 205 284 7.7E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 SMART SM00342 199 282 5.0E-31 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 266 5.7E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 282 5.7E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_1996 67ad2824f02580eab3c9f8300cf5488b 310 Pfam PF02311 AraC-like ligand binding domain 27 162 8.7E-23 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YPK_0499 0e721a9a208e183957691835edcd7690 155 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 5 153 32.336 T 12-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 YPK_0499 0e721a9a208e183957691835edcd7690 155 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 103 148 1.3E-18 T 12-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal YPK_0499 0e721a9a208e183957691835edcd7690 155 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 8 98 1.2E-29 T 12-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YPK_0499 0e721a9a208e183957691835edcd7690 155 Gene3D G3DSA:3.30.70.140 2 101 1.3E-36 T 12-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YPK_0499 0e721a9a208e183957691835edcd7690 155 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 10 100 2.0E-47 T 12-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal YPK_0499 0e721a9a208e183957691835edcd7690 155 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 7 151 2.8E-64 T 12-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 YPK_0499 0e721a9a208e183957691835edcd7690 155 Gene3D G3DSA:2.30.30.20 102 154 6.4E-25 T 12-10-2018 YPK_0499 0e721a9a208e183957691835edcd7690 155 SUPERFAMILY SSF57825 103 150 1.44E-14 T 12-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily YPK_0499 0e721a9a208e183957691835edcd7690 155 SUPERFAMILY SSF54893 3 101 1.03E-34 T 12-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily YPK_3913 088530e06a9f075ffde068419e75bd7a 71 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 1 71 2.4E-31 T 12-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 YPK_3913 088530e06a9f075ffde068419e75bd7a 71 SUPERFAMILY SSF140129 1 67 8.11E-18 T 12-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 YPK_3913 088530e06a9f075ffde068419e75bd7a 71 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 3 71 5.7E-21 T 12-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 YPK_2656 163388197bfac711c69aa57e40fde48e 242 Gene3D G3DSA:1.10.10.2250 1 78 2.1E-39 T 12-10-2018 YPK_2656 163388197bfac711c69aa57e40fde48e 242 Pfam PF04288 MukE-like family 10 226 2.4E-126 T 12-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 YPK_2656 163388197bfac711c69aa57e40fde48e 242 Gene3D G3DSA:1.10.10.2260 88 195 2.8E-54 T 12-10-2018 YPK_2656 163388197bfac711c69aa57e40fde48e 242 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 240 52.24 T 12-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 YPK_1799 9586d16f2670f5f0167c685012297ac2 375 Pfam PF00005 ABC transporter 21 162 3.5E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1799 9586d16f2670f5f0167c685012297ac2 375 SMART SM00382 29 217 2.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1799 9586d16f2670f5f0167c685012297ac2 375 SUPERFAMILY SSF52540 6 247 1.25E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1799 9586d16f2670f5f0167c685012297ac2 375 Gene3D G3DSA:2.40.50.140 295 357 7.5E-24 T 12-10-2018 YPK_1799 9586d16f2670f5f0167c685012297ac2 375 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1799 9586d16f2670f5f0167c685012297ac2 375 Gene3D G3DSA:2.40.50.940 228 366 7.5E-24 T 12-10-2018 YPK_1799 9586d16f2670f5f0167c685012297ac2 375 Gene3D G3DSA:3.40.50.300 4 227 3.0E-60 T 12-10-2018 YPK_1799 9586d16f2670f5f0167c685012297ac2 375 SUPERFAMILY SSF50331 243 373 8.02E-21 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_0076 688f6cd344bd209d759e0a683615626f 563 Gene3D G3DSA:3.40.1770.10 17 542 2.0E-260 T 12-10-2018 YPK_0076 688f6cd344bd209d759e0a683615626f 563 Hamap MF_00577 Urocanate hydratase [hutU]. 3 556 50.062 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0076 688f6cd344bd209d759e0a683615626f 563 PIRSF PIRSF001423 2 561 3.2E-293 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0076 688f6cd344bd209d759e0a683615626f 563 Pfam PF17392 Urocanase C-terminal domain 352 546 2.3E-92 T 12-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0076 688f6cd344bd209d759e0a683615626f 563 Pfam PF01175 Urocanase Rossmann-like domain 141 349 6.3E-85 T 12-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0076 688f6cd344bd209d759e0a683615626f 563 Pfam PF17391 Urocanase N-terminal domain 12 138 3.2E-62 T 12-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0076 688f6cd344bd209d759e0a683615626f 563 SUPERFAMILY SSF111326 7 555 7.72E-261 T 12-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0076 688f6cd344bd209d759e0a683615626f 563 Gene3D G3DSA:3.40.50.10730 142 349 2.0E-260 T 12-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0076 688f6cd344bd209d759e0a683615626f 563 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 554 2.6E-303 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0076 688f6cd344bd209d759e0a683615626f 563 ProSitePatterns PS01233 Urocanase signature. 442 457 - T 12-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 1.1E-70 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SMART SM00738 6 115 2.0E-50 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Pfam PF02357 Transcription termination factor nusG 7 112 2.1E-27 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.616 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Gene3D G3DSA:3.30.70.940 1 121 6.5E-48 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Gene3D G3DSA:2.30.30.30 122 180 2.3E-26 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 12-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Pfam PF00467 KOW motif 130 162 9.5E-8 T 12-10-2018 IPR005824 KOW YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SUPERFAMILY SSF50104 125 180 1.15E-19 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SMART SM00739 127 154 2.0E-6 T 12-10-2018 IPR005824 KOW YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SUPERFAMILY SSF82679 6 116 3.4E-40 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 1.9E-21 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.9E-21 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YPK_0334 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.9E-21 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 YPK_2771 f5b90d3babebed6f962afa7524fa4e4f 498 Gene3D G3DSA:3.40.605.10 36 488 3.1E-167 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_2771 f5b90d3babebed6f962afa7524fa4e4f 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 289 300 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YPK_2771 f5b90d3babebed6f962afa7524fa4e4f 498 SUPERFAMILY SSF53720 15 490 1.31E-157 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_2771 f5b90d3babebed6f962afa7524fa4e4f 498 Pfam PF00171 Aldehyde dehydrogenase family 30 490 1.3E-160 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_2771 f5b90d3babebed6f962afa7524fa4e4f 498 Gene3D G3DSA:3.40.309.10 265 459 3.1E-167 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 Pfam PF00206 Lyase 12 342 7.8E-117 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 Gene3D G3DSA:1.20.200.10 139 407 3.9E-120 T 12-10-2018 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 Gene3D G3DSA:1.10.40.30 408 465 4.7E-31 T 12-10-2018 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 Gene3D G3DSA:1.10.275.10 5 138 2.3E-55 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 5 461 1.1E-242 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 SUPERFAMILY SSF48557 4 462 4.27E-157 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 Pfam PF10415 Fumarase C C-terminus 408 461 1.4E-25 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 1.1E-5 T 12-10-2018 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 1.1E-5 T 12-10-2018 YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 2.7E-33 T 12-10-2018 IPR000362 Fumarate lyase family YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 2.7E-33 T 12-10-2018 IPR000362 Fumarate lyase family YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 2.7E-33 T 12-10-2018 IPR000362 Fumarate lyase family YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 2.7E-33 T 12-10-2018 IPR000362 Fumarate lyase family YPK_1985 1e7914b52b4a52c958c69ee8589167f4 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 91.19 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 Pfam PF01297 Zinc-uptake complex component A periplasmic 55 318 3.7E-80 T 12-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 Gene3D G3DSA:3.40.50.1980 209 322 3.3E-41 T 12-10-2018 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00691 Adhesin B signature 278 296 2.1E-38 T 12-10-2018 IPR006129 Adhesin B GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00691 Adhesin B signature 96 115 2.1E-38 T 12-10-2018 IPR006129 Adhesin B GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00691 Adhesin B signature 77 95 2.1E-38 T 12-10-2018 IPR006129 Adhesin B GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00691 Adhesin B signature 233 251 2.1E-38 T 12-10-2018 IPR006129 Adhesin B GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00691 Adhesin B signature 52 73 2.1E-38 T 12-10-2018 IPR006129 Adhesin B GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00691 Adhesin B signature 256 273 2.1E-38 T 12-10-2018 IPR006129 Adhesin B GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00691 Adhesin B signature 207 224 2.1E-38 T 12-10-2018 IPR006129 Adhesin B GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 SUPERFAMILY SSF53807 50 321 1.67E-91 T 12-10-2018 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00690 Adhesin family signature 83 96 1.7E-46 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00690 Adhesin family signature 207 228 1.7E-46 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00690 Adhesin family signature 260 278 1.7E-46 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00690 Adhesin family signature 52 70 1.7E-46 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00690 Adhesin family signature 96 113 1.7E-46 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 PRINTS PR00690 Adhesin family signature 286 305 1.7E-46 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 YPK_1815 0219bc23d2c47b59f18dd8873f0c1f0d 322 Gene3D G3DSA:3.40.50.1980 51 208 2.1E-55 T 12-10-2018 YPK_2073 a28376b238c84186360a863fc02a5b88 196 SUPERFAMILY SSF52540 1 141 5.03E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2073 a28376b238c84186360a863fc02a5b88 196 Gene3D G3DSA:3.40.50.300 1 141 1.2E-25 T 12-10-2018 YPK_2073 a28376b238c84186360a863fc02a5b88 196 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 12-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 YPK_2073 a28376b238c84186360a863fc02a5b88 196 PIRSF PIRSF035805 1 194 2.2E-57 T 12-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 YPK_2073 a28376b238c84186360a863fc02a5b88 196 Gene3D G3DSA:3.30.60.20 144 190 2.8E-10 T 12-10-2018 YPK_2073 a28376b238c84186360a863fc02a5b88 196 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 36.002 T 12-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 YPK_2073 a28376b238c84186360a863fc02a5b88 196 SUPERFAMILY SSF57716 142 191 1.28E-17 T 12-10-2018 YPK_2073 a28376b238c84186360a863fc02a5b88 196 Pfam PF00265 Thymidine kinase 2 186 6.5E-62 T 12-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 38 229 5.2E-78 T 12-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 SUPERFAMILY SSF56655 33 362 1.69E-110 T 12-10-2018 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 305 317 - T 12-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 PIRSF PIRSF000904 33 368 8.6E-122 T 12-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 37 365 42.129 T 12-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 PIRSF PIRSF500210 34 367 1.4E-124 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 Gene3D G3DSA:3.40.190.80 232 369 3.1E-58 T 12-10-2018 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 62 89 1.3E-72 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 183 206 1.3E-72 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 339 364 1.3E-72 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 99 125 1.3E-72 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 214 237 1.3E-72 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 240 267 1.3E-72 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 YPK_3766 3a2a332cb3294022ce0ec0e347db95e7 372 Gene3D G3DSA:3.30.540.10 36 230 8.9E-73 T 12-10-2018 YPK_2111 74cb6f62fc58bfd8c81be3dd941423c8 213 Pfam PF02600 Disulfide bond formation protein DsbB 12 159 3.1E-46 T 12-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 YPK_2111 74cb6f62fc58bfd8c81be3dd941423c8 213 Gene3D G3DSA:1.20.1550.10 1 176 9.2E-70 T 12-10-2018 IPR023380 DsbB-like superfamily YPK_2111 74cb6f62fc58bfd8c81be3dd941423c8 213 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 22.731 T 12-10-2018 IPR022920 Disulphide bond formation protein DsbB YPK_2111 74cb6f62fc58bfd8c81be3dd941423c8 213 SUPERFAMILY SSF158442 15 161 1.31E-46 T 12-10-2018 IPR023380 DsbB-like superfamily YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 Gene3D G3DSA:2.40.50.940 222 349 2.4E-24 T 12-10-2018 YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 Gene3D G3DSA:2.40.50.140 284 340 2.4E-24 T 12-10-2018 YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 SUPERFAMILY SSF52540 4 243 2.18E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 SUPERFAMILY SSF50331 237 355 2.27E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 Gene3D G3DSA:3.40.50.300 4 221 2.7E-65 T 12-10-2018 YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 Pfam PF00005 ABC transporter 20 161 1.2E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 Pfam PF08402 TOBE domain 277 348 4.9E-5 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1631 ae8ae05e216d98524395b2cb2128e3da 359 SMART SM00382 28 211 7.5E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3111 99413ecb3ddce4ec0c3e5553fe64ea6e 363 Gene3D G3DSA:2.60.40.3940 263 363 7.7E-8 T 12-10-2018 YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 SUPERFAMILY SSF49695 99 206 4.56E-20 T 12-10-2018 IPR011024 Gamma-crystallin-like YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 SUPERFAMILY SSF49695 14 108 2.46E-15 T 12-10-2018 IPR011024 Gamma-crystallin-like YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 Gene3D G3DSA:2.60.20.10 7 110 1.5E-18 T 12-10-2018 YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 Gene3D G3DSA:2.60.20.10 111 207 5.2E-23 T 12-10-2018 YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 Pfam PF00030 Beta/Gamma crystallin 113 206 1.5E-5 T 12-10-2018 IPR001064 Beta/gamma crystallin YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 SMART SM00247 112 207 9.9E-4 T 12-10-2018 IPR001064 Beta/gamma crystallin YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 SMART SM00247 26 110 0.18 T 12-10-2018 IPR001064 Beta/gamma crystallin YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 Pfam PF08964 Beta/Gamma crystallin 25 90 4.2E-7 T 12-10-2018 IPR015059 Calcium-dependent cell adhesion molecule, N-terminal GO:0016020|GO:0098609 YPK_1288 bfbcd81b1c1eaec6b1fc4c878e1ce5b2 806 Pfam PF09101 Exotoxin A binding 345 403 3.2E-5 T 12-10-2018 IPR015185 Exotoxin A, binding YPK_0559 4350ecf0f5c0870fcf3276d3782b7c22 331 SUPERFAMILY SSF51735 2 152 4.57E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0559 4350ecf0f5c0870fcf3276d3782b7c22 331 Gene3D G3DSA:3.30.360.10 135 325 1.2E-51 T 12-10-2018 YPK_0559 4350ecf0f5c0870fcf3276d3782b7c22 331 Gene3D G3DSA:3.40.50.720 1 134 5.0E-33 T 12-10-2018 YPK_0559 4350ecf0f5c0870fcf3276d3782b7c22 331 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 2.5E-23 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YPK_0559 4350ecf0f5c0870fcf3276d3782b7c22 331 SUPERFAMILY SSF55347 127 292 5.07E-23 T 12-10-2018 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 SMART SM00474 3 171 1.3E-40 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 Gene3D G3DSA:1.10.150.80 294 373 1.3E-28 T 12-10-2018 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 TIGRFAM TIGR01388 rnd: ribonuclease D 5 370 3.7E-146 T 12-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 SUPERFAMILY SSF53098 2 210 4.34E-62 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 Hamap MF_01899 Ribonuclease D [rnd]. 3 371 45.681 T 12-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 Gene3D G3DSA:1.10.150.80 195 293 1.7E-23 T 12-10-2018 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 Pfam PF00570 HRDC domain 213 279 1.4E-16 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 Gene3D G3DSA:3.30.420.10 1 194 4.1E-63 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 SUPERFAMILY SSF47819 194 300 4.14E-30 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 SMART SM00341 210 289 3.7E-18 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 SUPERFAMILY SSF47819 296 371 2.22E-22 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 YPK_2124 d31886617773e15a572899dfe0ecc9bb 373 Pfam PF01612 3'-5' exonuclease 3 168 7.9E-35 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 SUPERFAMILY SSF55973 111 232 3.49E-52 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 SUPERFAMILY SSF55973 3 109 1.06E-47 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 Gene3D G3DSA:3.30.300.10 103 372 2.1E-180 T 12-10-2018 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 1.2E-45 T 12-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 Gene3D G3DSA:3.30.300.10 11 270 2.1E-180 T 12-10-2018 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 1.7E-199 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 59.731 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 PIRSF PIRSF000497 1 381 3.4E-175 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 Gene3D G3DSA:3.30.300.10 5 233 2.1E-180 T 12-10-2018 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 4.0E-69 T 12-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 4.6E-43 T 12-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 SUPERFAMILY SSF55973 233 382 7.46E-71 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_0843 6093ff1ad56a9cf5b044827069cdcb18 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 YPK_1352 cafcf28fa34854d7ab4b0d07c9ae6835 208 SUPERFAMILY SSF53271 4 206 7.47E-66 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_1352 cafcf28fa34854d7ab4b0d07c9ae6835 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 5.4E-64 T 12-10-2018 YPK_1352 cafcf28fa34854d7ab4b0d07c9ae6835 208 Gene3D G3DSA:3.40.50.2020 1 208 5.9E-72 T 12-10-2018 YPK_1352 cafcf28fa34854d7ab4b0d07c9ae6835 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 3.0E-89 T 12-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 YPK_1352 cafcf28fa34854d7ab4b0d07c9ae6835 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 43.831 T 12-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 YPK_4150 313f5f33950eb94c233d28f942ee6ed8 260 SUPERFAMILY SSF53448 3 150 1.59E-27 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4150 313f5f33950eb94c233d28f942ee6ed8 260 Gene3D G3DSA:3.90.550.10 2 200 2.5E-26 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4150 313f5f33950eb94c233d28f942ee6ed8 260 Pfam PF00535 Glycosyl transferase family 2 8 132 5.6E-19 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YPK_0728 7a330b7b6d1a4c0832e4084c35a18ee7 255 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 87 3.9E-15 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YPK_0728 7a330b7b6d1a4c0832e4084c35a18ee7 255 PRINTS PR00207 Flagellin signature 58 81 2.4E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YPK_0728 7a330b7b6d1a4c0832e4084c35a18ee7 255 PRINTS PR00207 Flagellin signature 23 42 2.4E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YPK_0728 7a330b7b6d1a4c0832e4084c35a18ee7 255 SUPERFAMILY SSF64518 3 217 1.16E-28 T 12-10-2018 YPK_0728 7a330b7b6d1a4c0832e4084c35a18ee7 255 Gene3D G3DSA:3.30.70.2120 125 231 6.9E-34 T 12-10-2018 YPK_0728 7a330b7b6d1a4c0832e4084c35a18ee7 255 Gene3D G3DSA:1.20.1330.10 1 124 6.9E-34 T 12-10-2018 YPK_1092 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 4.1E-39 T 12-10-2018 IPR023370 YaeB-like, N-terminal domain YPK_1092 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 Gene3D G3DSA:2.40.30.70 24 147 1.2E-48 T 12-10-2018 IPR036414 YaeB, N-terminal domain superfamily YPK_1092 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 Gene3D G3DSA:3.30.2310.10 148 231 1.2E-22 T 12-10-2018 YPK_1092 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 SUPERFAMILY SSF118196 1 230 4.58E-86 T 12-10-2018 IPR036413 YaeB-like superfamily YPK_1092 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 12-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site YPK_1092 8a1ef0ba2ced73fdcb9d2ca4f5b61bd9 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 149 2.5E-57 T 12-10-2018 IPR023370 YaeB-like, N-terminal domain YPK_3221 9e1c6e5c250d3de3e0d1e19fd05c5f7c 607 Pfam PF00005 ABC transporter 357 505 2.0E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3221 9e1c6e5c250d3de3e0d1e19fd05c5f7c 607 Gene3D G3DSA:1.20.1560.10 1 328 8.8E-74 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_3221 9e1c6e5c250d3de3e0d1e19fd05c5f7c 607 SUPERFAMILY SSF52540 334 576 7.78E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3221 9e1c6e5c250d3de3e0d1e19fd05c5f7c 607 SMART SM00382 366 557 6.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3221 9e1c6e5c250d3de3e0d1e19fd05c5f7c 607 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3221 9e1c6e5c250d3de3e0d1e19fd05c5f7c 607 SUPERFAMILY SSF90123 12 324 7.06E-69 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_3221 9e1c6e5c250d3de3e0d1e19fd05c5f7c 607 Gene3D G3DSA:3.40.50.300 332 588 1.6E-80 T 12-10-2018 YPK_3221 9e1c6e5c250d3de3e0d1e19fd05c5f7c 607 Pfam PF00664 ABC transporter transmembrane region 26 295 4.2E-40 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 Gene3D G3DSA:1.10.1050.10 1 102 7.6E-46 T 12-10-2018 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 8.6E-86 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 Pfam PF01479 S4 domain 97 143 7.2E-18 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 Gene3D G3DSA:3.10.290.10 103 191 3.5E-36 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 SUPERFAMILY SSF55174 3 206 6.54E-72 T 12-10-2018 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 SMART SM00363 96 160 8.2E-20 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 12-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 SMART SM01390 3 95 6.1E-50 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.196 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 YPK_0307 f6d97c4f5674721605c1c4c9ef0497c7 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 6.8E-33 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 YPK_1301 d7215d6fe305f2bda0aebc89682c3132 459 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.283 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 YPK_1301 d7215d6fe305f2bda0aebc89682c3132 459 Pfam PF02601 Exonuclease VII, large subunit 126 440 2.1E-100 T 12-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 YPK_1301 d7215d6fe305f2bda0aebc89682c3132 459 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 359 8.1E-137 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 YPK_1301 d7215d6fe305f2bda0aebc89682c3132 459 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 1.1E-32 T 12-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 YPK_2944 681f8727fdec15b8108370597c5aaf32 350 Gene3D G3DSA:3.30.428.10 176 349 4.7E-69 T 12-10-2018 IPR036265 HIT-like superfamily YPK_2944 681f8727fdec15b8108370597c5aaf32 350 SUPERFAMILY SSF54197 179 345 1.7E-54 T 12-10-2018 IPR036265 HIT-like superfamily YPK_2944 681f8727fdec15b8108370597c5aaf32 350 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 12-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YPK_2944 681f8727fdec15b8108370597c5aaf32 350 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 1 346 5.3E-199 T 12-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YPK_2944 681f8727fdec15b8108370597c5aaf32 350 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 346 2.8E-68 T 12-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YPK_2944 681f8727fdec15b8108370597c5aaf32 350 Gene3D G3DSA:3.30.428.10 44 175 8.6E-58 T 12-10-2018 IPR036265 HIT-like superfamily YPK_2944 681f8727fdec15b8108370597c5aaf32 350 PIRSF PIRSF000808 1 341 7.5E-122 T 12-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YPK_2944 681f8727fdec15b8108370597c5aaf32 350 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 4 176 6.4E-71 T 12-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 YPK_2944 681f8727fdec15b8108370597c5aaf32 350 SUPERFAMILY SSF54197 4 177 3.69E-72 T 12-10-2018 IPR036265 HIT-like superfamily YPK_2394 b56442ff0ff4bc43fa06142c92546e2c 472 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 6 470 1.2E-186 T 12-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_2394 b56442ff0ff4bc43fa06142c92546e2c 472 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 467 2.8E-196 T 12-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_2394 b56442ff0ff4bc43fa06142c92546e2c 472 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 381 390 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_2394 b56442ff0ff4bc43fa06142c92546e2c 472 SMART SM00382 191 374 5.8E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2394 b56442ff0ff4bc43fa06142c92546e2c 472 SUPERFAMILY SSF52540 126 396 4.14E-91 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2394 b56442ff0ff4bc43fa06142c92546e2c 472 Gene3D G3DSA:3.40.50.12240 19 472 2.3E-165 T 12-10-2018 YPK_2394 b56442ff0ff4bc43fa06142c92546e2c 472 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 179 390 5.3E-71 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_3790 7745485a985630edd20fe351112049f0 246 Pfam PF00588 SpoU rRNA Methylase family 96 236 1.3E-39 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YPK_3790 7745485a985630edd20fe351112049f0 246 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 242 6.4E-90 T 12-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 YPK_3790 7745485a985630edd20fe351112049f0 246 Gene3D G3DSA:3.30.1330.30 1 75 2.1E-29 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like YPK_3790 7745485a985630edd20fe351112049f0 246 Gene3D G3DSA:3.40.1280.10 77 243 5.1E-66 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_3790 7745485a985630edd20fe351112049f0 246 SUPERFAMILY SSF55315 2 75 4.94E-20 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like YPK_3790 7745485a985630edd20fe351112049f0 246 SMART SM00967 4 80 1.1E-21 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 YPK_3790 7745485a985630edd20fe351112049f0 246 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 4 76 2.1E-19 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 YPK_3790 7745485a985630edd20fe351112049f0 246 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 243 44.264 T 12-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB YPK_3790 7745485a985630edd20fe351112049f0 246 SUPERFAMILY SSF75217 69 243 5.62E-49 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases YPK_3708 45c7bbac1b5e47444a74baa4fb88e198 294 SUPERFAMILY SSF161098 55 281 5.1E-57 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3708 45c7bbac1b5e47444a74baa4fb88e198 294 Gene3D G3DSA:1.10.3720.10 51 293 1.1E-67 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3708 45c7bbac1b5e47444a74baa4fb88e198 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 283 9.8E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 6 392 1.6E-135 T 12-10-2018 IPR017687 Outer membrane protein assembly factor BamB YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 Gene3D G3DSA:2.130.10.10 21 392 8.6E-96 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 Pfam PF13360 PQQ-like domain 78 320 5.8E-53 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 393 40.914 T 12-10-2018 IPR017687 Outer membrane protein assembly factor BamB YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 SMART SM00564 201 232 24.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 SMART SM00564 65 96 0.13 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 SMART SM00564 156 187 2.8E-4 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 SMART SM00564 115 147 0.02 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 SMART SM00564 290 321 770.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 SMART SM00564 252 283 7.7E-6 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 SMART SM00564 330 362 2.3 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YPK_1296 9c3573b92e47bbe9456af71479a78d71 393 SUPERFAMILY SSF50998 24 385 5.83E-78 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily YPK_3176 7e6a1fcc893783cdb8f7ace4dcdde07d 434 SUPERFAMILY SSF53613 36 416 2.96E-45 T 12-10-2018 IPR029056 Ribokinase-like YPK_3176 7e6a1fcc893783cdb8f7ace4dcdde07d 434 Pfam PF00294 pfkB family carbohydrate kinase 138 297 6.2E-9 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 Gene3D G3DSA:3.40.120.10 3 148 7.9E-53 T 12-10-2018 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 Gene3D G3DSA:3.40.120.10 170 252 2.0E-27 T 12-10-2018 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 168 187 2.5E-28 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 2.5E-28 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 2.5E-28 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 2.5E-28 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 Gene3D G3DSA:3.40.120.10 253 377 2.0E-27 T 12-10-2018 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 Gene3D G3DSA:3.30.310.50 379 460 1.3E-24 T 12-10-2018 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 SUPERFAMILY SSF53738 151 259 3.37E-26 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 374 3.7E-21 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 SUPERFAMILY SSF53738 3 175 6.67E-39 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 SUPERFAMILY SSF55957 377 459 6.8E-17 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 SUPERFAMILY SSF53738 261 371 1.96E-25 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 152 256 3.2E-17 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 383 454 4.4E-8 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1632 57cd7aecaf04f24746a33b913c833fe8 462 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 130 3.5E-34 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_0051 d201ab39946a8440b4de6937fe9f0242 185 Gene3D G3DSA:2.60.40.1090 28 185 2.3E-33 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_0051 d201ab39946a8440b4de6937fe9f0242 185 Pfam PF00419 Fimbrial protein 32 184 1.1E-14 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_0051 d201ab39946a8440b4de6937fe9f0242 185 SUPERFAMILY SSF49401 32 185 2.98E-36 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_4005 39912f724676bb8d5a776ee0a7000b96 410 PIRSF PIRSF033271 1 403 1.6E-203 T 12-10-2018 IPR008322 Uncharacterised protein family UPF0261 YPK_4005 39912f724676bb8d5a776ee0a7000b96 410 Pfam PF06792 Uncharacterised protein family (UPF0261) 4 399 2.1E-158 T 12-10-2018 IPR008322 Uncharacterised protein family UPF0261 YPK_4005 39912f724676bb8d5a776ee0a7000b96 410 Hamap MF_00677 UPF0261 protein . 2 402 53.54 T 12-10-2018 IPR008322 Uncharacterised protein family UPF0261 YPK_4005 39912f724676bb8d5a776ee0a7000b96 410 Gene3D G3DSA:3.40.50.12020 2 175 7.2E-56 T 12-10-2018 YPK_4005 39912f724676bb8d5a776ee0a7000b96 410 Gene3D G3DSA:3.40.50.12030 183 402 2.9E-85 T 12-10-2018 YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 Gene3D G3DSA:1.20.120.960 39 145 2.5E-38 T 12-10-2018 YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 115 1.1E-6 T 12-10-2018 IPR029095 NarX-like, N-terminal YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 499 586 2.2E-8 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 PIRSF PIRSF003167 1 593 2.5E-200 T 12-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 Gene3D G3DSA:3.30.565.10 456 591 2.6E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 SUPERFAMILY SSF55874 464 585 2.75E-16 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 Pfam PF07730 Histidine kinase 392 455 7.2E-17 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 Pfam PF00672 HAMP domain 173 221 2.3E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 SUPERFAMILY SSF158472 173 221 4.32E-8 T 12-10-2018 YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 Gene3D G3DSA:1.10.287.130 171 284 6.7E-7 T 12-10-2018 YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 SMART SM00387 496 589 8.1E-7 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2232 95ca498099dc3c7a2302296dd8441a37 593 SMART SM00304 173 226 9.0E-13 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_3265 4bb2fd264aa2f6d971e276580524ef06 356 Gene3D G3DSA:2.40.10.240 64 163 1.0E-116 T 12-10-2018 YPK_3265 4bb2fd264aa2f6d971e276580524ef06 356 Pfam PF02547 Queuosine biosynthesis protein 4 343 1.7E-131 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 YPK_3265 4bb2fd264aa2f6d971e276580524ef06 356 Gene3D G3DSA:3.40.1780.10 14 343 1.0E-116 T 12-10-2018 YPK_3265 4bb2fd264aa2f6d971e276580524ef06 356 SUPERFAMILY SSF111337 1 343 3.14E-137 T 12-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 YPK_3265 4bb2fd264aa2f6d971e276580524ef06 356 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 344 46.93 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 YPK_3265 4bb2fd264aa2f6d971e276580524ef06 356 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 343 4.5E-159 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 YPK_1275 a8c5e2761f279270251d4f62cc4d65bf 185 Gene3D G3DSA:1.10.10.10 22 165 6.7E-56 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1275 a8c5e2761f279270251d4f62cc4d65bf 185 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 70 88 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site YPK_1275 a8c5e2761f279270251d4f62cc4d65bf 185 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 22 185 52.305 T 12-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 YPK_1275 a8c5e2761f279270251d4f62cc4d65bf 185 Pfam PF02082 Transcriptional regulator 22 104 3.3E-27 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type YPK_1275 a8c5e2761f279270251d4f62cc4d65bf 185 SUPERFAMILY SSF46785 23 154 1.57E-36 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1275 a8c5e2761f279270251d4f62cc4d65bf 185 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 22 155 5.3E-67 T 12-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 YPK_1275 a8c5e2761f279270251d4f62cc4d65bf 185 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 22 152 2.8E-47 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 SUPERFAMILY SSF56601 28 479 2.54E-104 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 Gene3D G3DSA:3.40.710.10 249 482 8.6E-68 T 12-10-2018 YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 51 452 9.7E-170 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 350 364 8.4E-39 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 365 379 8.4E-39 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 429 442 8.4E-39 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 291 313 8.4E-39 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 63 82 8.4E-39 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 26 473 3.0E-165 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3740 4fb551aaa0853fb8d0ad4b325d027ca3 482 Gene3D G3DSA:3.50.80.20 87 186 6.0E-23 T 12-10-2018 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 Pfam PF00072 Response regulator receiver domain 5 113 1.1E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 SMART SM00421 147 204 7.7E-25 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.1E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 SMART SM00448 3 116 1.1E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 SUPERFAMILY SSF46894 141 210 1.36E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 5.2E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 5.2E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 5.2E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 Gene3D G3DSA:3.40.50.12740 4 210 1.7E-54 T 12-10-2018 YPK_2269 9d0d4ba5fd6b102f32603f191face3f8 210 SUPERFAMILY SSF52172 2 131 3.98E-30 T 12-10-2018 IPR011006 CheY-like superfamily YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 Pfam PF04055 Radical SAM superfamily 18 178 1.0E-29 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 SMART SM00729 13 217 9.7E-5 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 4 326 38.551 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 Pfam PF13353 4Fe-4S single cluster domain 22 122 1.7E-6 T 12-10-2018 YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 12-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 4 326 1.4E-104 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 Gene3D G3DSA:3.20.20.70 1 326 1.3E-81 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 Pfam PF06463 Molybdenum Cofactor Synthesis C 183 309 1.6E-40 T 12-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2922 49cd695bbb4ae87cab0ca67bc84073f5 326 SUPERFAMILY SSF102114 4 279 8.11E-70 T 12-10-2018 YPK_3237 a197bee84ce1f7652d5eabca07c765b2 106 PIRSF PIRSF003113 1 101 8.2E-33 T 12-10-2018 IPR002634 BolA protein YPK_3237 a197bee84ce1f7652d5eabca07c765b2 106 Gene3D G3DSA:3.30.300.90 2 91 3.8E-35 T 12-10-2018 YPK_3237 a197bee84ce1f7652d5eabca07c765b2 106 SUPERFAMILY SSF82657 3 90 3.01E-29 T 12-10-2018 IPR036065 BolA-like superfamily YPK_3237 a197bee84ce1f7652d5eabca07c765b2 106 Pfam PF01722 BolA-like protein 12 85 4.6E-29 T 12-10-2018 IPR002634 BolA protein YPK_2504 2b41ea6f16d9ebb79dcaa81420473148 474 PIRSF PIRSF006603 19 470 1.3E-66 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YPK_2504 2b41ea6f16d9ebb79dcaa81420473148 474 TIGRFAM TIGR00797 matE: MATE efflux family protein 39 443 3.5E-63 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YPK_2504 2b41ea6f16d9ebb79dcaa81420473148 474 Pfam PF01554 MatE 269 430 3.4E-19 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YPK_2504 2b41ea6f16d9ebb79dcaa81420473148 474 Pfam PF01554 MatE 39 199 1.0E-35 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YPK_3230 e1193ad908765d1e8a2c156bb0548277 628 Gene3D G3DSA:3.10.50.40 266 364 6.4E-31 T 12-10-2018 YPK_3230 e1193ad908765d1e8a2c156bb0548277 628 SUPERFAMILY SSF54534 225 357 4.97E-23 T 12-10-2018 YPK_3230 e1193ad908765d1e8a2c156bb0548277 628 SUPERFAMILY SSF109998 39 240 1.44E-33 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily YPK_3230 e1193ad908765d1e8a2c156bb0548277 628 Pfam PF13624 SurA N-terminal domain 1 166 3.8E-50 T 12-10-2018 YPK_3230 e1193ad908765d1e8a2c156bb0548277 628 Gene3D G3DSA:1.10.4030.30 39 194 3.2E-15 T 12-10-2018 YPK_3230 e1193ad908765d1e8a2c156bb0548277 628 Pfam PF13145 PPIC-type PPIASE domain 249 370 2.1E-23 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 YPK_3217 8773d750fd6685c60a1824b9d1f6fdf0 286 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 4.9E-102 T 12-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 YPK_3217 8773d750fd6685c60a1824b9d1f6fdf0 286 SUPERFAMILY SSF54637 116 283 2.84E-62 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_3217 8773d750fd6685c60a1824b9d1f6fdf0 286 Gene3D G3DSA:3.10.129.90 1 286 9.1E-118 T 12-10-2018 YPK_3217 8773d750fd6685c60a1824b9d1f6fdf0 286 Pfam PF13622 Thioesterase-like superfamily 33 282 7.6E-60 T 12-10-2018 YPK_3217 8773d750fd6685c60a1824b9d1f6fdf0 286 SUPERFAMILY SSF54637 5 114 3.84E-42 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_1459 4a1fdf63356f82c47dc937722538b704 159 Pfam PF05638 Type VI secretion system effector, Hcp 6 143 1.2E-23 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_1459 4a1fdf63356f82c47dc937722538b704 159 SUPERFAMILY SSF141452 2 158 6.15E-36 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_1459 4a1fdf63356f82c47dc937722538b704 159 Gene3D G3DSA:2.30.110.20 2 158 3.2E-52 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_1459 4a1fdf63356f82c47dc937722538b704 159 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 156 4.7E-60 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 ProSitePatterns PS01071 grpE protein signature. 144 187 - T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 Hamap MF_01151 Protein GrpE [grpE]. 4 189 21.315 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 PRINTS PR00773 GrpE protein signature 168 187 1.9E-26 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 PRINTS PR00773 GrpE protein signature 86 101 1.9E-26 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 PRINTS PR00773 GrpE protein signature 58 74 1.9E-26 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 PRINTS PR00773 GrpE protein signature 141 156 1.9E-26 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 SUPERFAMILY SSF51064 134 190 1.57E-18 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 Gene3D G3DSA:2.30.22.10 133 189 1.1E-25 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 SUPERFAMILY SSF58014 44 133 3.01E-26 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 Pfam PF01025 GrpE 16 189 4.7E-47 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 YPK_2974 3f1acc9f68f56ec6370e1b2b6b8d1d9e 192 Gene3D G3DSA:3.90.20.20 29 132 1.1E-33 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 YPK_2519 c7421fb27747acdf88ca873d623be70d 363 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 152 180 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YPK_2519 c7421fb27747acdf88ca873d623be70d 363 Gene3D G3DSA:1.20.1090.10 162 363 1.2E-57 T 12-10-2018 YPK_2519 c7421fb27747acdf88ca873d623be70d 363 Gene3D G3DSA:3.40.50.1970 12 160 9.1E-25 T 12-10-2018 YPK_2519 c7421fb27747acdf88ca873d623be70d 363 PIRSF PIRSF000112 2 363 5.8E-114 T 12-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 YPK_2519 c7421fb27747acdf88ca873d623be70d 363 SUPERFAMILY SSF56796 10 357 1.83E-61 T 12-10-2018 YPK_2519 c7421fb27747acdf88ca873d623be70d 363 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 350 1.2E-46 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 YPK_0812 9aa2a158ed93fee4215e83cd80c89b1b 319 Gene3D G3DSA:3.40.50.2300 28 290 1.4E-70 T 12-10-2018 YPK_0812 9aa2a158ed93fee4215e83cd80c89b1b 319 SUPERFAMILY SSF53822 23 314 1.25E-61 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0812 9aa2a158ed93fee4215e83cd80c89b1b 319 Gene3D G3DSA:3.40.50.2300 128 270 1.4E-70 T 12-10-2018 YPK_0812 9aa2a158ed93fee4215e83cd80c89b1b 319 Pfam PF13407 Periplasmic binding protein domain 27 290 1.3E-40 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_1576 ae84198486bb29d2db84a86a11d51219 289 Gene3D G3DSA:3.40.50.720 32 288 1.9E-79 T 12-10-2018 YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 193 212 1.2E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 131 1.2E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 173 181 1.2E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 Pfam PF00106 short chain dehydrogenase 46 238 1.8E-63 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 249 269 3.7E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 46 63 3.7E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 183 3.7E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 212 3.7E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 131 3.7E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 231 3.7E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1576 ae84198486bb29d2db84a86a11d51219 289 SUPERFAMILY SSF51735 43 287 2.7E-80 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1576 ae84198486bb29d2db84a86a11d51219 289 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 180 208 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_4109 de858a3085e4acc6d839932fcdd180d3 430 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 276 297 3.4E-10 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4109 de858a3085e4acc6d839932fcdd180d3 430 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 81 101 3.4E-10 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4109 de858a3085e4acc6d839932fcdd180d3 430 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 310 334 3.4E-10 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4109 de858a3085e4acc6d839932fcdd180d3 430 Pfam PF13437 HlyD family secretion protein 265 358 1.9E-11 T 12-10-2018 YPK_4109 de858a3085e4acc6d839932fcdd180d3 430 SUPERFAMILY SSF51230 65 106 4.71E-5 T 12-10-2018 IPR011053 Single hybrid motif YPK_4109 de858a3085e4acc6d839932fcdd180d3 430 ProSitePatterns PS00543 HlyD family secretion proteins signature. 392 414 - T 12-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 Gene3D G3DSA:3.40.1380.20 342 474 2.8E-152 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 Gene3D G3DSA:2.40.33.10 74 172 2.8E-152 T 12-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 SUPERFAMILY SSF50800 74 168 3.31E-24 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 5.6E-131 T 12-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 SUPERFAMILY SSF52935 329 479 3.14E-38 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 1.7E-169 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 7.0E-29 T 12-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 SUPERFAMILY SSF51621 4 344 1.61E-87 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 Gene3D G3DSA:3.20.20.60 6 341 2.8E-152 T 12-10-2018 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 6.3E-52 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 6.3E-52 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 6.3E-52 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 6.3E-52 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 6.3E-52 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 6.3E-52 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 6.3E-52 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2136 ab68619eae173fe7b6c701eff9be696b 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 12-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1155 b70e6e99a3c9becba31a0c12ed6bd55c 209 Gene3D G3DSA:3.40.50.2300 1 105 2.7E-27 T 12-10-2018 YPK_1155 b70e6e99a3c9becba31a0c12ed6bd55c 209 Gene3D G3DSA:1.10.10.10 106 209 6.5E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1155 b70e6e99a3c9becba31a0c12ed6bd55c 209 SMART SM00448 1 96 1.7E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1155 b70e6e99a3c9becba31a0c12ed6bd55c 209 SUPERFAMILY SSF52172 2 162 1.94E-30 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1155 b70e6e99a3c9becba31a0c12ed6bd55c 209 Pfam PF00486 Transcriptional regulatory protein, C terminal 131 207 6.3E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1155 b70e6e99a3c9becba31a0c12ed6bd55c 209 SMART SM00862 131 207 1.2E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1155 b70e6e99a3c9becba31a0c12ed6bd55c 209 Pfam PF00072 Response regulator receiver domain 4 97 3.2E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 Gene3D G3DSA:3.30.860.10 1 92 3.9E-43 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.1E-45 T 12-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 Pfam PF00203 Ribosomal protein S19 3 83 1.3E-35 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.5E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.5E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.5E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 12-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 PIRSF PIRSF002144 1 92 2.3E-31 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.571 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0287 b809f598f80073bab3bc75627b009ce4 92 SUPERFAMILY SSF54570 3 84 5.75E-35 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_2939 e9c8da64f33813583679035a3e8b0653 263 Gene3D G3DSA:2.40.50.100 183 253 4.2E-19 T 12-10-2018 YPK_2939 e9c8da64f33813583679035a3e8b0653 263 SUPERFAMILY SSF50331 122 191 4.37E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2939 e9c8da64f33813583679035a3e8b0653 263 Gene3D G3DSA:1.10.10.10 1 107 2.0E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2939 e9c8da64f33813583679035a3e8b0653 263 Pfam PF03459 TOBE domain 124 188 2.7E-15 T 12-10-2018 IPR005116 Transport-associated OB, type 1 YPK_2939 e9c8da64f33813583679035a3e8b0653 263 Pfam PF03459 TOBE domain 198 258 6.1E-12 T 12-10-2018 IPR005116 Transport-associated OB, type 1 YPK_2939 e9c8da64f33813583679035a3e8b0653 263 PIRSF PIRSF005763 1 263 1.1E-94 T 12-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 YPK_2939 e9c8da64f33813583679035a3e8b0653 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 122 191 3.1E-26 T 12-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 YPK_2939 e9c8da64f33813583679035a3e8b0653 263 SUPERFAMILY SSF50331 171 259 5.48E-16 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2939 e9c8da64f33813583679035a3e8b0653 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 2.5E-12 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2939 e9c8da64f33813583679035a3e8b0653 263 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 112 6.8E-38 T 12-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal YPK_2939 e9c8da64f33813583679035a3e8b0653 263 Gene3D G3DSA:2.40.50.100 108 182 9.7E-24 T 12-10-2018 YPK_2939 e9c8da64f33813583679035a3e8b0653 263 SUPERFAMILY SSF46785 2 103 7.62E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0111 4ea220fa8c341a215bf9c7fb22cbe7c7 378 Gene3D G3DSA:3.40.50.10350 1 362 6.2E-144 T 12-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold YPK_0111 4ea220fa8c341a215bf9c7fb22cbe7c7 378 Gene3D G3DSA:3.90.1510.10 42 276 6.2E-144 T 12-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 YPK_0111 4ea220fa8c341a215bf9c7fb22cbe7c7 378 PIRSF PIRSF006078 1 377 1.0E-142 T 12-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 YPK_0111 4ea220fa8c341a215bf9c7fb22cbe7c7 378 Pfam PF02595 Glycerate kinase family 3 374 2.5E-152 T 12-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 YPK_0111 4ea220fa8c341a215bf9c7fb22cbe7c7 378 SUPERFAMILY SSF110738 1 376 3.27E-146 T 12-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 YPK_0111 4ea220fa8c341a215bf9c7fb22cbe7c7 378 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 2.5E-166 T 12-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 12-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 12-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 12-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.8E-15 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 SUPERFAMILY SSF51206 8 136 1.23E-35 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 SMART SM00419 160 208 4.5E-17 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 Gene3D G3DSA:1.10.10.10 139 207 1.3E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 SMART SM00100 2 122 1.1E-26 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.5E-24 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0248 677797853f26d0ffd9d0cda9ef8774c2 210 Gene3D G3DSA:2.60.120.10 10 138 6.9E-45 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 SUPERFAMILY SSF46785 1 83 1.23E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 Gene3D G3DSA:1.10.10.10 1 89 1.9E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 Pfam PF03466 LysR substrate binding domain 89 287 1.5E-42 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 Gene3D G3DSA:3.40.190.10 90 287 1.5E-63 T 12-10-2018 YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 Gene3D G3DSA:3.40.190.10 164 269 1.5E-63 T 12-10-2018 YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 SUPERFAMILY SSF53850 91 287 2.05E-36 T 12-10-2018 YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 5.1E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2265 e05ee5d0507bde6d3f4f30e2357bd257 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 SUPERFAMILY SSF50615 1 75 2.56E-25 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 333 342 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 Gene3D G3DSA:2.40.10.170 2 75 9.0E-31 T 12-10-2018 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 Gene3D G3DSA:3.40.50.300 76 344 3.3E-113 T 12-10-2018 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 460 1.4E-262 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 SMART SM00382 142 405 1.2E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 460 56.822 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 342 3.8E-63 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 Gene3D G3DSA:1.10.1140.10 345 460 4.4E-60 T 12-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 72 1.8E-21 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 SUPERFAMILY SSF47917 345 459 2.09E-55 T 12-10-2018 YPK_4226 2b32ffa9c31bb7bae135c232a781652c 460 SUPERFAMILY SSF52540 77 348 1.24E-90 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2041 bed30817241fcb5e42f07764afe0e811 311 Pfam PF02811 PHP domain 30 141 2.2E-8 T 12-10-2018 IPR004013 PHP domain GO:0003824 YPK_2041 bed30817241fcb5e42f07764afe0e811 311 SUPERFAMILY SSF89550 28 301 3.53E-52 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 YPK_2041 bed30817241fcb5e42f07764afe0e811 311 SMART SM00481 29 96 4.8E-20 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPK_2041 bed30817241fcb5e42f07764afe0e811 311 Gene3D G3DSA:3.20.20.140 30 276 6.9E-82 T 12-10-2018 YPK_2041 bed30817241fcb5e42f07764afe0e811 311 Gene3D G3DSA:1.10.150.650 124 195 6.9E-82 T 12-10-2018 YPK_4196 763ac468b98a4d2f5c9db4f860b44e84 207 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YPK_4196 763ac468b98a4d2f5c9db4f860b44e84 207 Gene3D G3DSA:3.40.30.10 18 207 8.0E-53 T 12-10-2018 YPK_4196 763ac468b98a4d2f5c9db4f860b44e84 207 Pfam PF01323 DSBA-like thioredoxin domain 40 194 1.9E-28 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 YPK_4196 763ac468b98a4d2f5c9db4f860b44e84 207 SUPERFAMILY SSF52833 20 203 3.18E-46 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_4196 763ac468b98a4d2f5c9db4f860b44e84 207 PIRSF PIRSF001488 1 207 1.6E-91 T 12-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL YPK_3443 16989e6332336ff336266138264d6eb9 119 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 6 118 1.6E-34 T 12-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 YPK_3443 16989e6332336ff336266138264d6eb9 119 SUPERFAMILY SSF55620 3 119 4.5E-40 T 12-10-2018 YPK_3443 16989e6332336ff336266138264d6eb9 119 Gene3D G3DSA:3.30.479.10 1 119 2.3E-49 T 12-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 YPK_3443 16989e6332336ff336266138264d6eb9 119 PIRSF PIRSF006113 1 119 4.4E-55 T 12-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 YPK_3443 16989e6332336ff336266138264d6eb9 119 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 5 96 1.3E-33 T 12-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 YPK_3329 f46f10fc48ef1eb4e60f2036f6f4c23f 262 SMART SM00062 35 255 2.2E-41 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_3329 f46f10fc48ef1eb4e60f2036f6f4c23f 262 Gene3D G3DSA:3.40.190.10 27 245 8.5E-54 T 12-10-2018 YPK_3329 f46f10fc48ef1eb4e60f2036f6f4c23f 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 253 3.8E-47 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_3329 f46f10fc48ef1eb4e60f2036f6f4c23f 262 Gene3D G3DSA:3.40.190.10 122 213 8.5E-54 T 12-10-2018 YPK_3329 f46f10fc48ef1eb4e60f2036f6f4c23f 262 SUPERFAMILY SSF53850 5 254 1.38E-53 T 12-10-2018 YPK_3329 f46f10fc48ef1eb4e60f2036f6f4c23f 262 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site YPK_1474 80d785e3507850dff131cf0844179943 885 Gene3D G3DSA:1.10.1780.10 1 160 3.9E-39 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_1474 80d785e3507850dff131cf0844179943 885 Pfam PF07724 AAA domain (Cdc48 subfamily) 619 785 7.6E-38 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_1474 80d785e3507850dff131cf0844179943 885 Gene3D G3DSA:3.40.50.300 378 566 2.2E-47 T 12-10-2018 YPK_1474 80d785e3507850dff131cf0844179943 885 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 233 364 5.9E-10 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_1474 80d785e3507850dff131cf0844179943 885 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 668 686 1.1E-31 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_1474 80d785e3507850dff131cf0844179943 885 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 623 641 1.1E-31 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_1474 80d785e3507850dff131cf0844179943 885 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 697 715 1.1E-31 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_1474 80d785e3507850dff131cf0844179943 885 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 730 744 1.1E-31 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_1474 80d785e3507850dff131cf0844179943 885 SUPERFAMILY SSF81923 15 123 1.94E-17 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_1474 80d785e3507850dff131cf0844179943 885 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 324 336 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YPK_1474 80d785e3507850dff131cf0844179943 885 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 791 869 5.1E-15 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_1474 80d785e3507850dff131cf0844179943 885 Gene3D G3DSA:1.10.8.60 791 885 1.1E-13 T 12-10-2018 YPK_1474 80d785e3507850dff131cf0844179943 885 Gene3D G3DSA:3.40.50.300 189 377 4.8E-61 T 12-10-2018 YPK_1474 80d785e3507850dff131cf0844179943 885 SUPERFAMILY SSF52540 190 535 4.94E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1474 80d785e3507850dff131cf0844179943 885 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 863 0.0 T 12-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YPK_1474 80d785e3507850dff131cf0844179943 885 SMART SM01086 791 882 1.5E-14 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_1474 80d785e3507850dff131cf0844179943 885 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 653 671 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 YPK_1474 80d785e3507850dff131cf0844179943 885 SUPERFAMILY SSF52540 568 860 4.0E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1474 80d785e3507850dff131cf0844179943 885 Gene3D G3DSA:3.40.50.300 572 789 1.7E-63 T 12-10-2018 YPK_1474 80d785e3507850dff131cf0844179943 885 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 25 74 0.0029 T 12-10-2018 IPR004176 Clp, N-terminal YPK_1474 80d785e3507850dff131cf0844179943 885 SMART SM00382 619 770 3.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1474 80d785e3507850dff131cf0844179943 885 SMART SM00382 228 369 2.2E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1020 6f798e5dde128f6732f5f99ece4ce83d 295 SUPERFAMILY SSF56281 26 251 4.06E-42 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_1020 6f798e5dde128f6732f5f99ece4ce83d 295 Gene3D G3DSA:3.60.15.10 25 262 2.2E-28 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_1020 6f798e5dde128f6732f5f99ece4ce83d 295 SMART SM00849 43 228 3.1E-21 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_1020 6f798e5dde128f6732f5f99ece4ce83d 295 Pfam PF00753 Metallo-beta-lactamase superfamily 44 228 4.5E-9 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_3210 4d1b569e45e8ac9bba0db94d70e5cf39 86 SUPERFAMILY SSF143800 1 80 4.32E-21 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3210 4d1b569e45e8ac9bba0db94d70e5cf39 86 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 2.5E-15 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3210 4d1b569e45e8ac9bba0db94d70e5cf39 86 Pfam PF01197 Ribosomal protein L31 1 78 2.2E-23 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3210 4d1b569e45e8ac9bba0db94d70e5cf39 86 PRINTS PR01249 Ribosomal protein L31 signature 44 59 1.9E-13 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3210 4d1b569e45e8ac9bba0db94d70e5cf39 86 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.9E-13 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3210 4d1b569e45e8ac9bba0db94d70e5cf39 86 PRINTS PR01249 Ribosomal protein L31 signature 59 77 1.9E-13 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3210 4d1b569e45e8ac9bba0db94d70e5cf39 86 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 26.48 T 12-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3210 4d1b569e45e8ac9bba0db94d70e5cf39 86 Gene3D G3DSA:2.30.170.50 1 83 3.4E-21 T 12-10-2018 YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 Gene3D G3DSA:1.20.200.10 118 446 9.2E-159 T 12-10-2018 YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 1.9E-151 T 12-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 Gene3D G3DSA:1.10.275.10 1 117 2.4E-53 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 4.7E-17 T 12-10-2018 IPR000362 Fumarate lyase family YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 4.7E-17 T 12-10-2018 IPR000362 Fumarate lyase family YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 4.7E-17 T 12-10-2018 IPR000362 Fumarate lyase family YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 4.7E-17 T 12-10-2018 IPR000362 Fumarate lyase family YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 Pfam PF00206 Lyase 14 312 1.5E-78 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 SUPERFAMILY SSF48557 10 454 2.83E-105 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 7.6E-53 T 12-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 Gene3D G3DSA:1.10.40.30 382 445 9.2E-159 T 12-10-2018 YPK_1718 138eee08e9f0a39a3c3075b6ade0339d 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YPK_3273 102f594e01e720a1c102e3b29bd3bf2a 439 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 8.0E-156 T 12-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 YPK_3273 102f594e01e720a1c102e3b29bd3bf2a 439 Pfam PF05525 Branched-chain amino acid transport protein 7 426 2.0E-152 T 12-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 YPK_2979 cc8db460c4cba1a9b36e583f4239b49a 144 Gene3D G3DSA:3.30.530.20 3 144 1.5E-39 T 12-10-2018 IPR023393 START-like domain superfamily YPK_2979 cc8db460c4cba1a9b36e583f4239b49a 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 135 2.2E-33 T 12-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 YPK_2979 cc8db460c4cba1a9b36e583f4239b49a 144 SUPERFAMILY SSF55961 1 143 3.17E-35 T 12-10-2018 YPK_3637 870aef9fec8148571931116db33284f3 112 ProDom PD058594 MEMBRANE INNER C5447 MAJOR ECS5328 THE SUPERFAMILY PERMEASES STY4905 YJJZ 34 88 8.0E-24 T 12-10-2018 IPR009885 Protein of unknown function DUF1435 YPK_3637 870aef9fec8148571931116db33284f3 112 Pfam PF07256 Protein of unknown function (DUF1435) 35 108 3.6E-32 T 12-10-2018 IPR009885 Protein of unknown function DUF1435 YPK_2797 4af70e20e70c4af3a6a512a5208cafaf 75 PIRSF PIRSF006188 1 72 3.7E-35 T 12-10-2018 IPR009857 Uncharacterised protein family UPF0352 YPK_2797 4af70e20e70c4af3a6a512a5208cafaf 75 SUPERFAMILY SSF158651 1 75 2.09E-31 T 12-10-2018 IPR023202 YejL-like superfamily YPK_2797 4af70e20e70c4af3a6a512a5208cafaf 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 23.627 T 12-10-2018 IPR009857 Uncharacterised protein family UPF0352 YPK_2797 4af70e20e70c4af3a6a512a5208cafaf 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 1.3E-23 T 12-10-2018 IPR009857 Uncharacterised protein family UPF0352 YPK_2797 4af70e20e70c4af3a6a512a5208cafaf 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 2.0E-27 T 12-10-2018 IPR009857 Uncharacterised protein family UPF0352 YPK_2797 4af70e20e70c4af3a6a512a5208cafaf 75 Gene3D G3DSA:1.10.3390.10 1 75 9.3E-35 T 12-10-2018 IPR023202 YejL-like superfamily YPK_4211 1bd527219bce0cef78a5f30016e5715b 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.945 T 12-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup YPK_4211 1bd527219bce0cef78a5f30016e5715b 622 TIGRFAM TIGR00794 kup: potassium uptake protein 97 549 5.5E-185 T 12-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 YPK_4211 1bd527219bce0cef78a5f30016e5715b 622 Pfam PF02705 K+ potassium transporter 14 544 2.0E-210 T 12-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 YPK_1290 6b5c4a9d911703b2d4dbf8645d553885 398 PIRSF PIRSF006004 24 391 5.3E-147 T 12-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 YPK_1290 6b5c4a9d911703b2d4dbf8645d553885 398 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 29 383 7.6E-171 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 YPK_1290 6b5c4a9d911703b2d4dbf8645d553885 398 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 31 378 74.814 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 YPK_1290 6b5c4a9d911703b2d4dbf8645d553885 398 SUPERFAMILY SSF102114 130 348 5.1E-15 T 12-10-2018 YPK_1290 6b5c4a9d911703b2d4dbf8645d553885 398 Gene3D G3DSA:1.10.150.530 1 92 7.5E-30 T 12-10-2018 YPK_1290 6b5c4a9d911703b2d4dbf8645d553885 398 Pfam PF04055 Radical SAM superfamily 134 303 1.0E-17 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_1290 6b5c4a9d911703b2d4dbf8645d553885 398 Gene3D G3DSA:3.20.20.70 93 363 1.9E-113 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1563 d0e3574cc59526ea2bd82faef160c1e9 187 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 144 162 - T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1563 d0e3574cc59526ea2bd82faef160c1e9 187 Gene3D G3DSA:1.10.10.1590 34 103 1.2E-17 T 12-10-2018 YPK_1563 d0e3574cc59526ea2bd82faef160c1e9 187 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 45 186 2.1E-50 T 12-10-2018 YPK_1563 d0e3574cc59526ea2bd82faef160c1e9 187 SUPERFAMILY SSF52833 36 186 4.81E-49 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_1563 d0e3574cc59526ea2bd82faef160c1e9 187 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 43 186 7.1E-53 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1563 d0e3574cc59526ea2bd82faef160c1e9 187 PIRSF PIRSF000216 17 187 4.6E-53 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1563 d0e3574cc59526ea2bd82faef160c1e9 187 Gene3D G3DSA:3.40.30.10 104 186 3.4E-23 T 12-10-2018 YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 SUPERFAMILY SSF47781 469 557 9.12E-29 T 12-10-2018 IPR010994 RuvA domain 2-like YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Gene3D G3DSA:3.30.420.140 325 450 8.6E-152 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Pfam PF00575 S1 RNA binding domain 649 719 3.8E-22 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 SUPERFAMILY SSF53098 322 468 5.69E-49 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Pfam PF16921 Tex protein YqgF-like domain 327 450 5.2E-49 T 12-10-2018 IPR032639 Tex protein, YqgF-like domain YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 SUPERFAMILY SSF47781 559 631 2.45E-19 T 12-10-2018 IPR010994 RuvA domain 2-like YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Gene3D G3DSA:1.10.150.310 498 629 1.7E-50 T 12-10-2018 YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Pfam PF12836 Helix-hairpin-helix motif 490 554 1.3E-28 T 12-10-2018 YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Gene3D G3DSA:1.10.3500.10 112 497 8.6E-152 T 12-10-2018 IPR023323 Tex-like domain superfamily YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 SUPERFAMILY SSF50249 637 722 9.7E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Pfam PF09371 Tex-like protein N-terminal domain 9 193 1.9E-68 T 12-10-2018 IPR018974 Tex-like protein, N-terminal YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 SMART SM00732 326 423 1.0E-33 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Gene3D G3DSA:2.40.50.140 630 723 1.3E-28 T 12-10-2018 YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 Gene3D G3DSA:1.10.10.650 2 109 1.6E-38 T 12-10-2018 IPR023319 Tex-like protein, HTH domain superfamily YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 SUPERFAMILY SSF158832 3 321 1.96E-118 T 12-10-2018 YPK_0170 e9f7bba2ed4ef94e961b1e8fab638812 791 SMART SM00316 648 719 1.2E-25 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_1072 9f51702f299d9c4c0274c26c373c200e 282 Pfam PF01148 Cytidylyltransferase family 4 279 2.5E-71 T 12-10-2018 YPK_1072 9f51702f299d9c4c0274c26c373c200e 282 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 12-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 YPK_2240 56f721398bfd8e2a21b65e6dc00fc7d6 673 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 318 645 1.3E-148 T 12-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal YPK_2240 56f721398bfd8e2a21b65e6dc00fc7d6 673 Gene3D G3DSA:3.20.20.80 308 672 4.0E-146 T 12-10-2018 YPK_2240 56f721398bfd8e2a21b65e6dc00fc7d6 673 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 49 665 9.0E-278 T 12-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 YPK_2240 56f721398bfd8e2a21b65e6dc00fc7d6 673 Pfam PF01522 Polysaccharide deacetylase 103 270 6.4E-31 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 YPK_2240 56f721398bfd8e2a21b65e6dc00fc7d6 673 SUPERFAMILY SSF88713 66 290 2.25E-36 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YPK_2240 56f721398bfd8e2a21b65e6dc00fc7d6 673 Gene3D G3DSA:3.20.20.370 42 307 5.1E-77 T 12-10-2018 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 250 261 4.6E-29 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 295 306 4.6E-29 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 114 132 4.6E-29 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 269 282 4.6E-29 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 141 162 4.6E-29 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 ProSitePatterns PS00607 cAMP phosphodiesterases class-II signature. 118 132 - T 12-10-2018 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site GO:0008081 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 PIRSF PIRSF000962 1 344 1.2E-130 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 SUPERFAMILY SSF56281 42 320 4.87E-20 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 Pfam PF02112 cAMP phosphodiesterases class-II 41 339 4.7E-53 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 YPK_1164 559f8789ec4496dbacbea6407bae3a3f 345 Gene3D G3DSA:3.60.15.10 41 333 9.6E-17 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 SUPERFAMILY SSF56059 481 692 7.95E-26 T 12-10-2018 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 280 3.0E-45 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Pfam PF13549 ATP-grasp domain 472 694 6.0E-73 T 12-10-2018 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 SUPERFAMILY SSF52210 287 447 4.71E-38 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 SMART SM00881 9 104 8.8E-22 T 12-10-2018 IPR003781 CoA-binding GO:0048037 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Gene3D G3DSA:3.40.630.30 717 880 5.7E-42 T 12-10-2018 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 SUPERFAMILY SSF55729 614 866 2.4E-23 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 SUPERFAMILY SSF51735 2 136 2.03E-31 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Pfam PF13380 CoA binding domain 13 129 1.5E-20 T 12-10-2018 IPR003781 CoA-binding GO:0048037 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Gene3D G3DSA:3.30.1490.20 499 576 1.8E-55 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 SUPERFAMILY SSF52210 125 286 7.06E-37 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Gene3D G3DSA:3.40.50.261 131 283 1.2E-47 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Pfam PF00583 Acetyltransferase (GNAT) family 761 863 2.2E-12 T 12-10-2018 IPR000182 GNAT domain YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Gene3D G3DSA:3.30.470.20 479 690 1.8E-55 T 12-10-2018 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Gene3D G3DSA:3.40.50.261 285 455 1.1E-43 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_3343 2dadd2169db77d942cf919957b6de5a2 880 Gene3D G3DSA:3.40.50.720 2 130 1.6E-29 T 12-10-2018 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 Gene3D G3DSA:3.50.50.60 470 626 1.8E-118 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0563 79d311f52ac88360636f25ab9d36402f 673 Gene3D G3DSA:3.40.50.720 376 667 1.8E-118 T 12-10-2018 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 3.6E-12 T 12-10-2018 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 619 635 3.6E-12 T 12-10-2018 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 498 516 3.6E-12 T 12-10-2018 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 SUPERFAMILY SSF51395 3 363 8.55E-112 T 12-10-2018 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 SUPERFAMILY SSF51905 461 651 7.62E-22 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0563 79d311f52ac88360636f25ab9d36402f 673 Gene3D G3DSA:3.20.20.70 3 369 3.6E-125 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 SUPERFAMILY SSF51971 334 519 4.71E-41 T 12-10-2018 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 635 8.3E-22 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 3.0E-90 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 620 634 1.4E-5 T 12-10-2018 YPK_0563 79d311f52ac88360636f25ab9d36402f 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 377 399 1.4E-5 T 12-10-2018 YPK_4037 a4772f218516db3cc768517d26206a80 498 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 3 495 54.25 T 12-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 YPK_4037 a4772f218516db3cc768517d26206a80 498 SUPERFAMILY SSF53067 8 129 2.53E-38 T 12-10-2018 YPK_4037 a4772f218516db3cc768517d26206a80 498 Gene3D G3DSA:3.30.420.150 113 290 1.9E-87 T 12-10-2018 YPK_4037 a4772f218516db3cc768517d26206a80 498 PIRSF PIRSF001267 1 497 1.0E-180 T 12-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 YPK_4037 a4772f218516db3cc768517d26206a80 498 Gene3D G3DSA:3.30.420.40 10 298 1.9E-87 T 12-10-2018 YPK_4037 a4772f218516db3cc768517d26206a80 498 Gene3D G3DSA:1.10.3210.10 306 498 2.6E-49 T 12-10-2018 YPK_4037 a4772f218516db3cc768517d26206a80 498 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 9 301 2.6E-93 T 12-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 YPK_4037 a4772f218516db3cc768517d26206a80 498 SUPERFAMILY SSF53067 133 301 4.21E-42 T 12-10-2018 YPK_4037 a4772f218516db3cc768517d26206a80 498 Pfam PF02541 Ppx/GppA phosphatase family 22 302 1.7E-96 T 12-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 YPK_4037 a4772f218516db3cc768517d26206a80 498 SUPERFAMILY SSF109604 308 495 1.48E-44 T 12-10-2018 YPK_2090 9f675a2ef0b95ed024187675918c5296 183 SUPERFAMILY SSF55469 1 177 2.75E-38 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 YPK_2090 9f675a2ef0b95ed024187675918c5296 183 Pfam PF00881 Nitroreductase family 8 161 1.6E-21 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 YPK_2090 9f675a2ef0b95ed024187675918c5296 183 PIRSF PIRSF000232 1 182 2.3E-62 T 12-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like YPK_2090 9f675a2ef0b95ed024187675918c5296 183 Gene3D G3DSA:3.40.109.10 1 183 3.8E-42 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 YPK_2057 694d0a710b556f0bc0f1a6ad804c8c03 81 Gene3D G3DSA:3.30.70.1060 1 81 6.6E-30 T 12-10-2018 YPK_2057 694d0a710b556f0bc0f1a6ad804c8c03 81 Pfam PF03795 YCII-related domain 3 78 9.2E-22 T 12-10-2018 IPR005545 YCII-related YPK_2057 694d0a710b556f0bc0f1a6ad804c8c03 81 SUPERFAMILY SSF54909 2 81 3.22E-24 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_3504 ad570b838904cb7e5987d86ead747e07 250 Pfam PF07072 Cell division protein 22 228 3.1E-78 T 12-10-2018 IPR009777 Cell division protein ZapD YPK_3504 ad570b838904cb7e5987d86ead747e07 250 Hamap MF_01092 Cell division protein ZapD [zapD]. 7 250 32.807 T 12-10-2018 IPR009777 Cell division protein ZapD YPK_3504 ad570b838904cb7e5987d86ead747e07 250 Gene3D G3DSA:2.60.440.10 9 250 1.6E-84 T 12-10-2018 IPR027462 Z ring-associated protein D, C-terminal YPK_3504 ad570b838904cb7e5987d86ead747e07 250 Gene3D G3DSA:1.10.3900.10 16 182 1.6E-84 T 12-10-2018 YPK_3504 ad570b838904cb7e5987d86ead747e07 250 SUPERFAMILY SSF160950 6 250 1.01E-91 T 12-10-2018 IPR036268 ZapD domain superfamily YPK_0607 0a683b50ba381f78349217e67d6553bb 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 2.3E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0607 0a683b50ba381f78349217e67d6553bb 310 Gene3D G3DSA:3.40.190.290 92 293 1.7E-55 T 12-10-2018 YPK_0607 0a683b50ba381f78349217e67d6553bb 310 Pfam PF03466 LysR substrate binding domain 89 293 9.3E-39 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_0607 0a683b50ba381f78349217e67d6553bb 310 SUPERFAMILY SSF46785 4 84 1.8E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0607 0a683b50ba381f78349217e67d6553bb 310 Gene3D G3DSA:1.10.10.10 3 87 7.6E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0607 0a683b50ba381f78349217e67d6553bb 310 SUPERFAMILY SSF53850 89 295 5.07E-41 T 12-10-2018 YPK_3081 fcdbef328f597e13ea9302dfea86a57e 587 SUPERFAMILY SSF53335 393 578 6.38E-17 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3081 fcdbef328f597e13ea9302dfea86a57e 587 Pfam PF12147 Putative methyltransferase 276 583 1.8E-151 T 12-10-2018 IPR022744 Methyltransferase domain, putative YPK_3081 fcdbef328f597e13ea9302dfea86a57e 587 SUPERFAMILY SSF53474 9 282 5.46E-30 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3081 fcdbef328f597e13ea9302dfea86a57e 587 Pfam PF12146 Serine aminopeptidase, S33 32 268 5.4E-64 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 YPK_3081 fcdbef328f597e13ea9302dfea86a57e 587 Gene3D G3DSA:3.40.50.1820 2 286 4.5E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3081 fcdbef328f597e13ea9302dfea86a57e 587 Gene3D G3DSA:3.40.50.150 385 573 9.7E-15 T 12-10-2018 YPK_2000 c00c1f3d710369674fd5c6d9b4a38ffc 567 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 13 150 2.2E-6 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_2000 c00c1f3d710369674fd5c6d9b4a38ffc 567 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 11 557 2.0E-224 T 12-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 YPK_2000 c00c1f3d710369674fd5c6d9b4a38ffc 567 Hamap MF_00520 Ribulokinase [araB]. 10 567 52.222 T 12-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 YPK_2000 c00c1f3d710369674fd5c6d9b4a38ffc 567 Gene3D G3DSA:3.30.420.460 345 546 2.9E-118 T 12-10-2018 YPK_2000 c00c1f3d710369674fd5c6d9b4a38ffc 567 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 300 510 6.9E-36 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_2000 c00c1f3d710369674fd5c6d9b4a38ffc 567 SUPERFAMILY SSF53067 294 557 4.66E-43 T 12-10-2018 YPK_2000 c00c1f3d710369674fd5c6d9b4a38ffc 567 SUPERFAMILY SSF53067 13 293 1.14E-21 T 12-10-2018 YPK_2000 c00c1f3d710369674fd5c6d9b4a38ffc 567 Gene3D G3DSA:3.30.420.40 14 535 2.9E-118 T 12-10-2018 YPK_3963 f3fb96c85a25a5fd95e4d3686104fd7b 162 Pfam PF04449 CS1 type fimbrial major subunit 24 159 6.5E-37 T 12-10-2018 IPR007540 Fimbrial major subunit, CS1-type GO:0009289 YPK_3963 f3fb96c85a25a5fd95e4d3686104fd7b 162 Gene3D G3DSA:2.60.40.2040 36 162 8.0E-8 T 12-10-2018 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 Gene3D G3DSA:1.10.287.130 116 191 4.2E-14 T 12-10-2018 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 SMART SM00091 7 75 6.2E-7 T 12-10-2018 IPR000014 PAS domain YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 3.0E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 Gene3D G3DSA:3.30.565.10 192 348 1.2E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 SUPERFAMILY SSF55785 11 97 1.35E-5 T 12-10-2018 IPR035965 PAS domain superfamily YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 SMART SM00387 233 349 8.1E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 SUPERFAMILY SSF55874 198 346 4.32E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 Pfam PF00989 PAS fold 11 98 4.3E-6 T 12-10-2018 IPR013767 PAS fold GO:0006355 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 SUPERFAMILY SSF47384 121 190 7.46E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 190 4.8E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 Gene3D G3DSA:3.30.450.20 9 112 1.1E-16 T 12-10-2018 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 SMART SM00388 129 194 1.3E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 2.3E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 2.3E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_4190 9120b31d582b7e6ed16a3c0bc6d56630 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 2.3E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2178 b3e621c6db1a97d7af6871051fea0ca4 276 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 274 8.4E-89 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 YPK_2178 b3e621c6db1a97d7af6871051fea0ca4 276 Gene3D G3DSA:3.40.50.150 87 275 3.8E-61 T 12-10-2018 YPK_2178 b3e621c6db1a97d7af6871051fea0ca4 276 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_2178 b3e621c6db1a97d7af6871051fea0ca4 276 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 274 45.871 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 YPK_2178 b3e621c6db1a97d7af6871051fea0ca4 276 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 270 2.6E-89 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 YPK_2178 b3e621c6db1a97d7af6871051fea0ca4 276 SUPERFAMILY SSF53335 3 272 2.45E-58 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2178 b3e621c6db1a97d7af6871051fea0ca4 276 Gene3D G3DSA:1.10.8.10 1 84 1.7E-22 T 12-10-2018 YPK_2178 b3e621c6db1a97d7af6871051fea0ca4 276 Pfam PF13847 Methyltransferase domain 111 247 1.4E-21 T 12-10-2018 IPR025714 Methyltransferase domain YPK_2734 87af8d1c8680733b7646e0e25d051946 562 Gene3D G3DSA:3.30.70.1450 223 285 2.0E-9 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_2734 87af8d1c8680733b7646e0e25d051946 562 Pfam PF02080 TrkA-C domain 305 372 1.5E-9 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_2734 87af8d1c8680733b7646e0e25d051946 562 Pfam PF02080 TrkA-C domain 227 278 5.8E-9 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_2734 87af8d1c8680733b7646e0e25d051946 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 390 541 3.9E-47 T 12-10-2018 IPR006512 YidE/YbjL duplication YPK_2734 87af8d1c8680733b7646e0e25d051946 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 169 1.5E-39 T 12-10-2018 IPR006512 YidE/YbjL duplication YPK_2734 87af8d1c8680733b7646e0e25d051946 562 SUPERFAMILY SSF116726 227 282 1.7E-10 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_2734 87af8d1c8680733b7646e0e25d051946 562 Gene3D G3DSA:3.30.70.1450 299 373 6.4E-7 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_2734 87af8d1c8680733b7646e0e25d051946 562 Pfam PF06826 Predicted Permease Membrane Region 17 182 8.0E-39 T 12-10-2018 IPR006512 YidE/YbjL duplication YPK_2734 87af8d1c8680733b7646e0e25d051946 562 Pfam PF06826 Predicted Permease Membrane Region 386 554 8.3E-42 T 12-10-2018 IPR006512 YidE/YbjL duplication YPK_2734 87af8d1c8680733b7646e0e25d051946 562 SUPERFAMILY SSF116726 291 374 5.23E-11 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_2734 87af8d1c8680733b7646e0e25d051946 562 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 557 59.381 T 12-10-2018 IPR023017 Transport protein YbjL, putative YPK_3676 7eff2d3f16cf1d276f1b09397407a959 421 Pfam PF13356 Arm DNA-binding domain 3 87 2.5E-20 T 12-10-2018 IPR025166 Integrase, DNA-binding domain YPK_3676 7eff2d3f16cf1d276f1b09397407a959 421 SUPERFAMILY SSF56349 97 385 1.68E-46 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_3676 7eff2d3f16cf1d276f1b09397407a959 421 Gene3D G3DSA:1.10.150.130 89 203 3.6E-26 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_3676 7eff2d3f16cf1d276f1b09397407a959 421 Pfam PF00589 Phage integrase family 205 383 1.9E-18 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_3676 7eff2d3f16cf1d276f1b09397407a959 421 Gene3D G3DSA:1.10.443.10 204 392 1.1E-13 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_3676 7eff2d3f16cf1d276f1b09397407a959 421 Gene3D G3DSA:3.30.160.390 1 88 1.5E-36 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YPK_1005 50a79615535929ebc9be99f2d434c8af 503 Gene3D G3DSA:3.30.450.90 88 221 4.0E-49 T 12-10-2018 YPK_1005 50a79615535929ebc9be99f2d434c8af 503 Gene3D G3DSA:3.40.50.300 222 502 7.2E-106 T 12-10-2018 YPK_1005 50a79615535929ebc9be99f2d434c8af 503 SUPERFAMILY SSF52540 105 494 2.53E-95 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1005 50a79615535929ebc9be99f2d434c8af 503 SUPERFAMILY SSF160246 11 75 1.07E-11 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily YPK_1005 50a79615535929ebc9be99f2d434c8af 503 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 316 330 - T 12-10-2018 IPR001482 Type II/IV secretion system protein YPK_1005 50a79615535929ebc9be99f2d434c8af 503 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 13 494 6.4E-191 T 12-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 YPK_1005 50a79615535929ebc9be99f2d434c8af 503 SMART SM00382 249 367 0.0027 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1005 50a79615535929ebc9be99f2d434c8af 503 Pfam PF00437 Type II/IV secretion system protein 122 388 2.9E-84 T 12-10-2018 IPR001482 Type II/IV secretion system protein YPK_1005 50a79615535929ebc9be99f2d434c8af 503 Gene3D G3DSA:3.30.300.160 4 87 1.7E-7 T 12-10-2018 YPK_0808 db75dff45e17f86965d29e6564f2a411 91 Pfam PF03811 InsA N-terminal domain 1 36 3.8E-9 T 12-10-2018 IPR003220 InsA N-terminal domain GO:0006313 YPK_0808 db75dff45e17f86965d29e6564f2a411 91 Pfam PF12759 InsA C-terminal domain 43 88 2.1E-20 T 12-10-2018 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPK_3477 c811d7e3742f4698797e94d902cbb144 308 Gene3D G3DSA:3.40.50.300 1 235 3.3E-66 T 12-10-2018 YPK_3477 c811d7e3742f4698797e94d902cbb144 308 Pfam PF00005 ABC transporter 21 165 1.9E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3477 c811d7e3742f4698797e94d902cbb144 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3477 c811d7e3742f4698797e94d902cbb144 308 SUPERFAMILY SSF52540 3 234 1.63E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3477 c811d7e3742f4698797e94d902cbb144 308 SMART SM00382 30 213 1.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0124 fba02514709fe277c501dcb99fea7d35 851 PRINTS PR00344 Bacterial sensor protein C-terminal signature 647 661 1.3E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 PRINTS PR00344 Bacterial sensor protein C-terminal signature 665 675 1.3E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 PRINTS PR00344 Bacterial sensor protein C-terminal signature 678 696 1.3E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 PRINTS PR00344 Bacterial sensor protein C-terminal signature 702 715 1.3E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SMART SM00388 497 559 1.1E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Gene3D G3DSA:1.10.8.500 321 365 5.6E-11 T 12-10-2018 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SUPERFAMILY SSF158472 321 363 1.44E-7 T 12-10-2018 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SUPERFAMILY SSF47384 492 557 2.55E-7 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Pfam PF00672 HAMP domain 323 362 2.4E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Pfam PF12860 PAS fold 386 486 1.5E-9 T 12-10-2018 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Pfam PF00512 His Kinase A (phospho-acceptor) domain 498 558 6.5E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SMART SM00448 738 848 2.0E-13 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Gene3D G3DSA:1.10.287.130 489 558 4.6E-17 T 12-10-2018 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Gene3D G3DSA:3.30.450.20 366 487 2.6E-9 T 12-10-2018 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Gene3D G3DSA:3.40.50.2300 736 851 2.2E-19 T 12-10-2018 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SUPERFAMILY SSF55785 367 471 3.24E-7 T 12-10-2018 IPR035965 PAS domain superfamily YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SUPERFAMILY SSF55874 550 718 4.06E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Pfam PF00072 Response regulator receiver domain 740 848 1.3E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 601 716 5.2E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0124 fba02514709fe277c501dcb99fea7d35 851 Gene3D G3DSA:3.30.565.10 561 722 6.0E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SUPERFAMILY SSF52172 739 851 1.18E-20 T 12-10-2018 IPR011006 CheY-like superfamily YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SMART SM00304 315 368 5.1E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_0124 fba02514709fe277c501dcb99fea7d35 851 SMART SM00387 600 718 2.7E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2118 945dc0dc66cae458d1a4d758598de209 218 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 18 207 1.6E-52 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 YPK_2118 945dc0dc66cae458d1a4d758598de209 218 Gene3D G3DSA:3.90.850.10 1 218 7.5E-76 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_2118 945dc0dc66cae458d1a4d758598de209 218 SUPERFAMILY SSF56529 11 212 3.92E-67 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_4106 2409a8f5766ea4714ead9159156f689f 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 4.8E-62 T 12-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 YPK_4106 2409a8f5766ea4714ead9159156f689f 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.958 T 12-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 YPK_4106 2409a8f5766ea4714ead9159156f689f 161 Pfam PF03737 Aldolase/RraA 5 152 1.2E-35 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPK_4106 2409a8f5766ea4714ead9159156f689f 161 Gene3D G3DSA:3.50.30.40 1 161 2.4E-61 T 12-10-2018 YPK_4106 2409a8f5766ea4714ead9159156f689f 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 7.1E-87 T 12-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 YPK_4106 2409a8f5766ea4714ead9159156f689f 161 SUPERFAMILY SSF89562 2 158 4.71E-44 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPK_1777 580e41be0b54d6688e9a0ba752be2a7b 176 Pfam PF05229 Spore Coat Protein U domain 31 173 1.0E-34 T 12-10-2018 IPR007893 Spore coat protein U YPK_1777 580e41be0b54d6688e9a0ba752be2a7b 176 SMART SM00972 118 173 2.9E-19 T 12-10-2018 IPR007893 Spore coat protein U YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 61 103 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 SUPERFAMILY SSF46689 11 58 2.42E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 Gene3D G3DSA:1.10.10.60 8 58 1.7E-18 T 12-10-2018 YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 SUPERFAMILY SSF46689 60 110 2.91E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 SMART SM00342 24 107 2.4E-26 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 Pfam PF12833 Helix-turn-helix domain 30 108 2.1E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 1.0E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 1.0E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_2484 cb864c2b6602eb2de252a32cbe2fe3e4 128 Gene3D G3DSA:1.10.10.60 59 119 7.5E-17 T 12-10-2018 YPK_3049 d3315d22553ecdd1131b4a5ca8cfb35f 508 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YPK_3049 d3315d22553ecdd1131b4a5ca8cfb35f 508 Pfam PF00171 Aldehyde dehydrogenase family 27 487 2.0E-135 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_3049 d3315d22553ecdd1131b4a5ca8cfb35f 508 SUPERFAMILY SSF53720 3 493 1.17E-143 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_3049 d3315d22553ecdd1131b4a5ca8cfb35f 508 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 16 491 3.3E-201 T 12-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 YPK_3049 d3315d22553ecdd1131b4a5ca8cfb35f 508 Gene3D G3DSA:3.40.309.10 256 460 1.2E-149 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_3049 d3315d22553ecdd1131b4a5ca8cfb35f 508 Gene3D G3DSA:3.40.605.10 31 468 1.2E-149 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_3020 07406b49262ee00ba0b5bc71d1ac5ee7 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 26.47 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 YPK_3020 07406b49262ee00ba0b5bc71d1ac5ee7 156 SUPERFAMILY SSF75217 2 154 2.62E-48 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases YPK_3020 07406b49262ee00ba0b5bc71d1ac5ee7 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 4.9E-46 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 YPK_3020 07406b49262ee00ba0b5bc71d1ac5ee7 156 Gene3D G3DSA:3.40.1280.10 1 156 4.2E-51 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_3020 07406b49262ee00ba0b5bc71d1ac5ee7 156 PIRSF PIRSF004505 1 155 5.6E-40 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 YPK_3020 07406b49262ee00ba0b5bc71d1ac5ee7 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 156 3.3E-82 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 YPK_0668 af9d6c7644445b29d75af4559d1832ac 385 Gene3D G3DSA:1.20.1090.10 183 385 6.7E-48 T 12-10-2018 YPK_0668 af9d6c7644445b29d75af4559d1832ac 385 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 262 282 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YPK_0668 af9d6c7644445b29d75af4559d1832ac 385 SUPERFAMILY SSF56796 1 384 1.22E-107 T 12-10-2018 YPK_0668 af9d6c7644445b29d75af4559d1832ac 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YPK_0668 af9d6c7644445b29d75af4559d1832ac 385 Gene3D G3DSA:3.40.50.1970 1 182 1.1E-48 T 12-10-2018 YPK_0668 af9d6c7644445b29d75af4559d1832ac 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 358 8.0E-90 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 126 138 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 SUPERFAMILY SSF53067 242 482 7.0E-64 T 12-10-2018 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 TIGRFAM TIGR01312 XylB: xylulokinase 3 477 9.5E-185 T 12-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 Gene3D G3DSA:3.30.420.40 1 241 1.9E-92 T 12-10-2018 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 249 436 5.0E-30 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 240 1.5E-83 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 SUPERFAMILY SSF53067 2 242 2.68E-73 T 12-10-2018 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 Gene3D G3DSA:3.30.420.40 242 483 5.4E-91 T 12-10-2018 YPK_0055 101537648a50bcaca8cf05c364fe5287 484 PIRSF PIRSF000538 1 484 3.0E-137 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_1167 dc546c8638cda6e304e1fdfcf9bb52ee 218 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 1.5E-89 T 12-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 YPK_1167 dc546c8638cda6e304e1fdfcf9bb52ee 218 SUPERFAMILY SSF160467 5 92 8.89E-9 T 12-10-2018 YPK_1167 dc546c8638cda6e304e1fdfcf9bb52ee 218 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 202 1.1E-66 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D YPK_1167 dc546c8638cda6e304e1fdfcf9bb52ee 218 SUPERFAMILY SSF50891 88 214 4.55E-44 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily YPK_1167 dc546c8638cda6e304e1fdfcf9bb52ee 218 Gene3D G3DSA:2.40.100.10 87 217 1.5E-53 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily YPK_1167 dc546c8638cda6e304e1fdfcf9bb52ee 218 SMART SM00796 4 202 1.3E-89 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Gene3D G3DSA:3.30.70.400 177 248 6.5E-26 T 12-10-2018 IPR035891 CheY-binding domain of CheA YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SUPERFAMILY SSF55052 182 245 2.62E-19 T 12-10-2018 IPR035891 CheY-binding domain of CheA YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Pfam PF01584 CheW-like domain 584 710 1.4E-24 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SMART SM00260 571 711 8.8E-42 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SMART SM01231 331 394 2.6E-20 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 533 3.1E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 557 3.1E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 498 3.1E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 PRINTS PR00344 Bacterial sensor protein C-terminal signature 563 576 3.1E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Pfam PF09078 CheY binding 183 245 1.1E-23 T 12-10-2018 IPR015162 CheY binding YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Gene3D G3DSA:1.20.120.160 1 149 2.0E-43 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Gene3D G3DSA:2.30.30.40 579 707 6.5E-38 T 12-10-2018 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SMART SM00387 439 579 8.1E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Gene3D G3DSA:1.10.287.560 331 394 2.3E-16 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SUPERFAMILY SSF47226 7 126 1.83E-29 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 332 394 1.8E-16 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 442 578 3.1E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Pfam PF01627 Hpt domain 9 104 2.3E-19 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Gene3D G3DSA:3.30.565.10 395 578 2.0E-51 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SUPERFAMILY SSF55874 397 577 4.71E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SUPERFAMILY SSF50341 578 710 9.81E-31 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SMART SM00073 5 102 2.7E-29 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 SUPERFAMILY SSF47384 332 395 4.32E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_1749 1949a55d76e09de515da6d7f15562ed9 727 Gene3D G3DSA:2.40.50.180 602 666 6.5E-38 T 12-10-2018 YPK_3278 167305994b80c53a202943de8a3b0579 1229 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1110 1181 3.1E-15 T 12-10-2018 YPK_3278 167305994b80c53a202943de8a3b0579 1229 Gene3D G3DSA:3.40.50.300 981 1221 1.8E-27 T 12-10-2018 YPK_3278 167305994b80c53a202943de8a3b0579 1229 SUPERFAMILY SSF52540 1004 1199 1.04E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3278 167305994b80c53a202943de8a3b0579 1229 Gene3D G3DSA:3.40.50.300 1 285 1.1E-46 T 12-10-2018 YPK_3278 167305994b80c53a202943de8a3b0579 1229 Pfam PF13476 AAA domain 5 237 1.1E-26 T 12-10-2018 IPR038729 Rad50/SbcC-type AAA domain YPK_3278 167305994b80c53a202943de8a3b0579 1229 SUPERFAMILY SSF52540 1 496 1.71E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3570 f613dabea464a61b0db73ec3c2f68b6c 750 Pfam PF03968 OstA-like protein 23 163 8.2E-30 T 12-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal YPK_3570 f613dabea464a61b0db73ec3c2f68b6c 750 Gene3D G3DSA:2.60.450.10 14 114 1.5E-6 T 12-10-2018 YPK_3570 f613dabea464a61b0db73ec3c2f68b6c 750 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 1 729 19.664 T 12-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 YPK_3570 f613dabea464a61b0db73ec3c2f68b6c 750 Pfam PF04453 Organic solvent tolerance protein 277 663 4.7E-107 T 12-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 YPK_3642 c00461c79972b0f26f4587871b468130 1028 Gene3D G3DSA:1.20.1640.10 508 1010 1.0E-249 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 Gene3D G3DSA:3.30.2090.10 179 271 1.0E-249 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3642 c00461c79972b0f26f4587871b468130 1028 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3642 c00461c79972b0f26f4587871b468130 1028 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3642 c00461c79972b0f26f4587871b468130 1028 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3642 c00461c79972b0f26f4587871b468130 1028 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 1.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3642 c00461c79972b0f26f4587871b468130 1028 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.9E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3642 c00461c79972b0f26f4587871b468130 1028 SUPERFAMILY SSF82693 136 326 9.77E-23 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 Gene3D G3DSA:3.30.70.1430 559 657 1.0E-249 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 SUPERFAMILY SSF82714 722 792 1.14E-8 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3642 c00461c79972b0f26f4587871b468130 1028 Gene3D G3DSA:1.20.1640.10 13 507 1.0E-249 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 SUPERFAMILY SSF82693 559 632 8.89E-6 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 SUPERFAMILY SSF82714 184 268 3.66E-12 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3642 c00461c79972b0f26f4587871b468130 1028 Gene3D G3DSA:3.30.70.1320 136 328 1.0E-249 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 Gene3D G3DSA:3.30.2090.10 709 799 1.0E-249 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3642 c00461c79972b0f26f4587871b468130 1028 SUPERFAMILY SSF82866 795 1014 1.29E-45 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 Gene3D G3DSA:3.30.70.1430 40 807 1.0E-249 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 SUPERFAMILY SSF82693 40 135 3.79E-19 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 Gene3D G3DSA:3.30.70.1440 658 859 1.0E-249 T 12-10-2018 YPK_3642 c00461c79972b0f26f4587871b468130 1028 Pfam PF00873 AcrB/AcrD/AcrF family 6 1011 9.8E-162 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3642 c00461c79972b0f26f4587871b468130 1028 SUPERFAMILY SSF82866 293 489 1.83E-36 T 12-10-2018 YPK_3850 610951319ea2fd167b536c244bad4baf 182 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 40.47 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 YPK_3850 610951319ea2fd167b536c244bad4baf 182 PIRSF PIRSF002070 2 163 1.3E-40 T 12-10-2018 YPK_3850 610951319ea2fd167b536c244bad4baf 182 Pfam PF00436 Single-strand binding protein family 6 112 7.4E-44 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 YPK_3850 610951319ea2fd167b536c244bad4baf 182 Gene3D G3DSA:2.40.50.140 2 148 9.3E-54 T 12-10-2018 YPK_3850 610951319ea2fd167b536c244bad4baf 182 SUPERFAMILY SSF50249 4 182 3.77E-63 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3850 610951319ea2fd167b536c244bad4baf 182 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 182 1.0E-61 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 YPK_0428 cf6f1d331209f4789ab1b27376493a8c 549 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 546 1.5E-206 T 12-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 YPK_0428 cf6f1d331209f4789ab1b27376493a8c 549 Pfam PF00999 Sodium/hydrogen exchanger family 8 421 1.2E-79 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 418 447 1.1E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 82 97 1.1E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 312 341 1.1E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 389 416 1.1E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 211 231 1.1E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 27 52 1.1E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 466 495 1.1E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 Pfam PF02203 Tar ligand binding domain homologue 25 193 9.6E-38 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 Gene3D G3DSA:1.10.287.950 236 540 7.2E-78 T 12-10-2018 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 SMART SM00304 236 290 8.9E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 350 504 7.5E-44 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 SMART SM00319 66 201 3.2E-5 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 Gene3D G3DSA:1.20.120.30 44 211 2.6E-40 T 12-10-2018 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 SMART SM00283 291 538 2.2E-64 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 SUPERFAMILY SSF47170 47 197 2.49E-40 T 12-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPK_1018 41bcb5af94da23011e1ad66c609ac65d 563 SUPERFAMILY SSF58104 257 543 1.7E-59 T 12-10-2018 YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 Gene3D G3DSA:2.30.30.30 1 65 3.8E-15 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 SMART SM01185 69 125 3.6E-14 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 PIRSF PIRSF005901 1 190 9.3E-60 T 12-10-2018 IPR020599 Translation elongation factor P/YeiP YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 124 4.9E-14 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 SUPERFAMILY SSF50104 1 64 1.56E-10 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 Gene3D G3DSA:2.40.50.140 66 130 1.7E-15 T 12-10-2018 YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 Gene3D G3DSA:2.40.50.140 132 189 2.6E-19 T 12-10-2018 YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 ProSitePatterns PS01275 Elongation factor P signature. 154 173 - T 12-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 61 6.5E-16 T 12-10-2018 IPR013185 Translation elongation factor, KOW-like YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 Pfam PF09285 Elongation factor P, C-terminal 133 188 1.9E-17 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 SUPERFAMILY SSF50249 67 130 3.68E-11 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 189 1.6E-96 T 12-10-2018 IPR011897 Translation elongation factor P-like, YeiP YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 SUPERFAMILY SSF50249 132 189 2.68E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 189 42.731 T 12-10-2018 IPR011897 Translation elongation factor P-like, YeiP YPK_2777 4679b86f3f5e18ad0d0f2d97640b8a52 190 SMART SM00841 133 188 8.3E-24 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 SUPERFAMILY SSF48179 241 366 8.73E-42 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 Pfam PF02153 Prephenate dehydrogenase 138 344 4.0E-31 T 12-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 Gene3D G3DSA:1.20.59.10 1 80 2.4E-16 T 12-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 PIRSF PIRSF001499 1 373 1.8E-182 T 12-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 SUPERFAMILY SSF51735 91 238 1.57E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 Gene3D G3DSA:3.40.50.720 81 246 1.1E-43 T 12-10-2018 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 SUPERFAMILY SSF48600 4 88 4.4E-23 T 12-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 5.3E-44 T 12-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 Pfam PF01817 Chorismate mutase type II 9 86 3.1E-20 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 Gene3D G3DSA:1.10.3660.10 248 373 1.9E-51 T 12-10-2018 YPK_3356 5b14eb985cf2b4b9efb0a80cc7d8c7a2 373 SMART SM00830 9 89 1.1E-29 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 260 282 - T 12-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 SUPERFAMILY SSF53850 104 290 1.63E-56 T 12-10-2018 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 324 331 - T 12-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 PIRSF PIRSF001500 1 379 1.4E-141 T 12-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 Pfam PF01817 Chorismate mutase type II 10 88 6.6E-16 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 SUPERFAMILY SSF55021 279 376 1.01E-23 T 12-10-2018 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 SUPERFAMILY SSF48600 5 91 2.01E-21 T 12-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 Gene3D G3DSA:3.40.190.10 107 280 8.2E-56 T 12-10-2018 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 SMART SM00830 10 90 6.1E-23 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 Pfam PF00800 Prephenate dehydratase 105 286 3.6E-61 T 12-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 Gene3D G3DSA:1.20.59.10 1 106 2.3E-32 T 12-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 6 88 9.2E-34 T 12-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 Gene3D G3DSA:3.30.70.260 290 378 1.2E-23 T 12-10-2018 YPK_3355 5873f7102ae3d244823d7bf99c65c937 385 Gene3D G3DSA:3.40.190.10 188 273 8.2E-56 T 12-10-2018 YPK_2807 809da73c5753701a3e950a595ac8c761 246 Gene3D G3DSA:3.40.50.10490 80 246 3.6E-31 T 12-10-2018 YPK_2807 809da73c5753701a3e950a595ac8c761 246 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 70 1.4E-14 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YPK_2807 809da73c5753701a3e950a595ac8c761 246 Pfam PF01380 SIS domain 108 218 1.9E-15 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_2807 809da73c5753701a3e950a595ac8c761 246 Gene3D G3DSA:1.10.10.10 3 71 1.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2807 809da73c5753701a3e950a595ac8c761 246 SUPERFAMILY SSF53697 86 230 3.4E-31 T 12-10-2018 YPK_2807 809da73c5753701a3e950a595ac8c761 246 SUPERFAMILY SSF46689 6 72 2.33E-20 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 Gene3D G3DSA:2.40.50.140 1 106 1.1E-35 T 12-10-2018 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 8.6E-18 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.66 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 Pfam PF02938 GAD domain 307 406 2.9E-30 T 12-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 SUPERFAMILY SSF55261 288 419 1.83E-45 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 SUPERFAMILY SSF55681 108 583 2.4E-103 T 12-10-2018 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 584 5.1E-273 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 SUPERFAMILY SSF50249 1 105 2.67E-34 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 Gene3D G3DSA:3.30.1360.30 271 420 1.6E-197 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 3.2E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 3.2E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 3.2E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 3.2E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 Gene3D G3DSA:3.30.930.10 118 578 1.6E-197 T 12-10-2018 YPK_2148 1be2c2a3c6f23dbb960bd4443d7acca1 598 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 1.2E-107 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2658 3845339e0a773103043f7a435fcfdd4b 261 SUPERFAMILY SSF53335 4 255 1.37E-38 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2658 3845339e0a773103043f7a435fcfdd4b 261 Gene3D G3DSA:3.40.50.150 8 261 4.8E-71 T 12-10-2018 YPK_2658 3845339e0a773103043f7a435fcfdd4b 261 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 255 42.087 T 12-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 YPK_2658 3845339e0a773103043f7a435fcfdd4b 261 Pfam PF13847 Methyltransferase domain 46 147 7.0E-19 T 12-10-2018 IPR025714 Methyltransferase domain YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 SUPERFAMILY SSF54862 665 837 3.49E-22 T 12-10-2018 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Gene3D G3DSA:3.40.920.10 417 624 4.5E-73 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 347 1.9E-14 T 12-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Gene3D G3DSA:3.40.50.920 255 416 5.2E-54 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 957 1069 9.2E-9 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 SUPERFAMILY SSF52518 794 1164 8.99E-118 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1168 0.0 T 12-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Gene3D G3DSA:3.40.50.970 793 1170 2.2E-150 T 12-10-2018 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Gene3D G3DSA:3.40.50.970 1 254 1.8E-106 T 12-10-2018 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 243 6.6E-81 T 12-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Pfam PF10371 Domain of unknown function 627 678 1.1E-23 T 12-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 689 700 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 SUPERFAMILY SSF52922 255 410 4.14E-42 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Gene3D G3DSA:4.10.780.10 633 668 4.2E-7 T 12-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 SMART SM00890 622 679 2.2E-30 T 12-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Pfam PF12838 4Fe-4S dicluster domain 689 757 3.5E-9 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 PIRSF PIRSF000159 1 1177 0.0 T 12-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 SUPERFAMILY SSF52518 2 254 2.71E-73 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 SUPERFAMILY SSF53323 417 668 2.62E-73 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Gene3D G3DSA:3.30.70.20 669 791 3.5E-38 T 12-10-2018 YPK_1913 8e0a7bb5da4f7f260d192de7fbc27c13 1177 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 426 608 6.2E-35 T 12-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Gene3D G3DSA:2.40.50.140 445 528 1.8E-20 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Gene3D G3DSA:2.40.50.140 6 97 3.1E-17 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Gene3D G3DSA:2.40.50.140 98 181 4.6E-7 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Gene3D G3DSA:2.40.50.140 358 444 1.6E-22 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Gene3D G3DSA:2.40.50.140 269 357 1.2E-29 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PIRSF PIRSF002111 1 534 6.2E-217 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SUPERFAMILY SSF50249 189 275 7.46E-27 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SUPERFAMILY SSF50249 1 112 4.52E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 2.3E-236 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SUPERFAMILY SSF50249 363 444 4.77E-20 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Pfam PF00575 S1 RNA binding domain 20 78 6.7E-7 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Pfam PF00575 S1 RNA binding domain 279 347 2.8E-19 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Pfam PF00575 S1 RNA binding domain 190 260 2.4E-21 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Pfam PF00575 S1 RNA binding domain 449 520 4.3E-16 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Pfam PF00575 S1 RNA binding domain 103 171 6.9E-10 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Pfam PF00575 S1 RNA binding domain 361 434 3.3E-21 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SUPERFAMILY SSF50249 255 371 1.37E-29 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SMART SM00316 275 347 6.5E-26 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SMART SM00316 19 87 5.0E-5 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SMART SM00316 362 434 1.8E-20 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SMART SM00316 103 171 8.1E-9 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SMART SM00316 449 520 2.0E-21 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SMART SM00316 190 260 2.8E-28 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SUPERFAMILY SSF50249 104 185 4.25E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 6.7E-99 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 Gene3D G3DSA:2.40.50.140 187 268 1.1E-27 T 12-10-2018 YPK_2668 28cdfe915096deec08ff09b71c8d77e3 557 SUPERFAMILY SSF50249 429 533 5.74E-22 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1500 f547a3b3627e15553c14402ede9d2916 164 Gene3D G3DSA:2.40.50.140 30 143 3.4E-43 T 12-10-2018 YPK_1500 f547a3b3627e15553c14402ede9d2916 164 SUPERFAMILY SSF82093 30 143 3.27E-41 T 12-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 YPK_1500 f547a3b3627e15553c14402ede9d2916 164 Pfam PF03100 CcmE 4 137 1.2E-44 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 YPK_1500 f547a3b3627e15553c14402ede9d2916 164 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 32.157 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 Pfam PF01389 OmpA-like transmembrane domain 23 200 6.0E-68 T 12-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 Gene3D G3DSA:2.40.160.20 22 198 9.1E-70 T 12-10-2018 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 Gene3D G3DSA:3.30.1330.60 206 350 4.6E-54 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_2630 c820262d696b6c623331f6cf718b97ef 353 SUPERFAMILY SSF103088 217 341 1.96E-32 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 247 266 5.9E-63 T 12-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 108 124 5.9E-63 T 12-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 320 333 5.9E-63 T 12-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 185 199 5.9E-63 T 12-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 171 185 5.9E-63 T 12-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 286 305 5.9E-63 T 12-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01022 Outer membrane protein A signature 218 233 5.9E-63 T 12-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 ProSitePatterns PS01068 OmpA-like domain. 264 308 - T 12-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 Pfam PF00691 OmpA family 229 322 6.2E-19 T 12-10-2018 IPR006665 OmpA-like domain YPK_2630 c820262d696b6c623331f6cf718b97ef 353 SUPERFAMILY SSF56925 22 200 1.33E-40 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01021 OMPA domain signature 230 252 1.4E-20 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01021 OMPA domain signature 277 293 1.4E-20 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_2630 c820262d696b6c623331f6cf718b97ef 353 PRINTS PR01021 OMPA domain signature 262 277 1.4E-20 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_3783 0bfe51019c02a4ab549446e969f7961d 55 Gene3D G3DSA:2.40.50.140 1 55 4.4E-16 T 12-10-2018 YPK_3783 0bfe51019c02a4ab549446e969f7961d 55 PIRSF PIRSF003135 1 52 2.4E-22 T 12-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 YPK_3783 0bfe51019c02a4ab549446e969f7961d 55 SUPERFAMILY SSF50249 1 54 3.31E-12 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 282 1.2E-128 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 SUPERFAMILY SSF53328 88 281 1.2E-60 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 PIRSF PIRSF036480 6 282 2.4E-116 T 12-10-2018 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 Pfam PF00551 Formyl transferase 88 264 4.0E-53 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 4.1E-67 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 4.1E-67 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 4.1E-67 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 4.1E-67 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 43 55 4.1E-67 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 4.1E-67 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 Pfam PF01842 ACT domain 10 70 5.3E-7 T 12-10-2018 IPR002912 ACT domain YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 282 45.55 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 SUPERFAMILY SSF55021 9 58 2.42E-8 T 12-10-2018 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 Gene3D G3DSA:3.40.50.170 87 282 7.8E-67 T 12-10-2018 YPK_2080 e5455b8be4ed0f9803db52d2e21daf98 282 Gene3D G3DSA:3.30.70.260 3 85 1.3E-15 T 12-10-2018 YPK_3181 9530afc08cb1394271bdc1b07e66bec3 462 Pfam PF00483 Nucleotidyl transferase 4 284 2.3E-70 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YPK_3181 9530afc08cb1394271bdc1b07e66bec3 462 Gene3D G3DSA:2.60.120.10 347 454 1.4E-17 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_3181 9530afc08cb1394271bdc1b07e66bec3 462 SUPERFAMILY SSF53448 2 280 9.86E-72 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3181 9530afc08cb1394271bdc1b07e66bec3 462 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2 462 8.8E-233 T 12-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 YPK_3181 9530afc08cb1394271bdc1b07e66bec3 462 SUPERFAMILY SSF51182 183 462 6.03E-81 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_3181 9530afc08cb1394271bdc1b07e66bec3 462 Gene3D G3DSA:3.90.550.10 2 346 2.0E-120 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3181 9530afc08cb1394271bdc1b07e66bec3 462 Pfam PF01050 Mannose-6-phosphate isomerase 313 462 7.2E-64 T 12-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 PIRSF PIRSF000185 22 447 8.8E-114 T 12-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 2.3E-85 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 12-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 SUPERFAMILY SSF53223 6 196 5.12E-74 T 12-10-2018 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 Gene3D G3DSA:3.40.50.720 209 373 1.7E-173 T 12-10-2018 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 3.5E-33 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 3.5E-33 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 3.5E-33 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 3.5E-33 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 Gene3D G3DSA:1.10.285.10 401 447 1.1E-10 T 12-10-2018 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 SUPERFAMILY SSF51735 202 446 5.09E-73 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 Gene3D G3DSA:1.10.285.10 14 374 1.7E-173 T 12-10-2018 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 4.6E-51 T 12-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 Gene3D G3DSA:3.40.50.10860 55 190 1.7E-173 T 12-10-2018 YPK_0119 8071908ddfd9824af202c5fca1776d5d 447 SMART SM00839 204 445 6.6E-91 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 YPK_3304 7a614f4d224b88413122774aa74336d2 413 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 408 6.5E-195 T 12-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 YPK_3304 7a614f4d224b88413122774aa74336d2 413 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 36.684 T 12-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 YPK_3304 7a614f4d224b88413122774aa74336d2 413 PIRSF PIRSF016055 1 413 2.9E-198 T 12-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 YPK_3304 7a614f4d224b88413122774aa74336d2 413 Pfam PF03116 NQR2, RnfD, RnfE family 43 405 4.4E-107 T 12-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 YPK_3010 a23d13698fb21c51a28fe0db7ba3f12d 305 Gene3D G3DSA:3.40.190.10 34 279 7.6E-100 T 12-10-2018 YPK_3010 a23d13698fb21c51a28fe0db7ba3f12d 305 SMART SM00062 44 276 6.0E-63 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_3010 a23d13698fb21c51a28fe0db7ba3f12d 305 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 45 274 2.8E-46 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_3010 a23d13698fb21c51a28fe0db7ba3f12d 305 Gene3D G3DSA:3.40.190.10 138 233 7.6E-100 T 12-10-2018 YPK_3010 a23d13698fb21c51a28fe0db7ba3f12d 305 SUPERFAMILY SSF53850 3 277 6.73E-62 T 12-10-2018 YPK_0503 4481fac7783ea2f498583a38d842c6be 160 Gene3D G3DSA:3.40.930.10 1 157 8.7E-61 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_0503 4481fac7783ea2f498583a38d842c6be 160 SUPERFAMILY SSF55804 8 154 1.44E-40 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_0503 4481fac7783ea2f498583a38d842c6be 160 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 12 154 2.2E-36 T 12-10-2018 IPR002178 PTS EIIA type-2 domain YPK_0503 4481fac7783ea2f498583a38d842c6be 160 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 57 73 - T 12-10-2018 IPR002178 PTS EIIA type-2 domain YPK_0503 4481fac7783ea2f498583a38d842c6be 160 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 8 154 1.2E-59 T 12-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 YPK_2410 9bbc8b7648f5032f70d159d498b438b2 331 Pfam PF13407 Periplasmic binding protein domain 29 284 4.3E-45 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_2410 9bbc8b7648f5032f70d159d498b438b2 331 Gene3D G3DSA:3.40.50.2300 131 265 8.6E-95 T 12-10-2018 YPK_2410 9bbc8b7648f5032f70d159d498b438b2 331 SUPERFAMILY SSF53822 26 331 3.3E-60 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2410 9bbc8b7648f5032f70d159d498b438b2 331 Gene3D G3DSA:3.40.50.2300 28 304 8.6E-95 T 12-10-2018 YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 Gene3D G3DSA:1.20.1650.10 27 101 6.6E-7 T 12-10-2018 YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 Gene3D G3DSA:3.90.1150.10 388 506 5.0E-34 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 SUPERFAMILY SSF53383 50 505 5.91E-118 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 99 438 9.5E-62 T 12-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 Gene3D G3DSA:3.40.640.10 116 387 2.3E-83 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 102 121 6.9E-6 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 420 439 6.9E-6 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 142 161 6.9E-6 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_2547 42c413f28c2d742fc4d06a00aac97031 515 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 377 392 6.9E-6 T 12-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 YPK_1047 ff52386c64c21d019550d29ead4a2d38 390 Gene3D G3DSA:2.40.40.10 54 355 7.3E-154 T 12-10-2018 IPR036908 RlpA-like domain superfamily YPK_1047 ff52386c64c21d019550d29ead4a2d38 390 SMART SM00925 125 259 7.8E-75 T 12-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 YPK_1047 ff52386c64c21d019550d29ead4a2d38 390 PIRSF PIRSF019422 1 367 1.0E-87 T 12-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A YPK_1047 ff52386c64c21d019550d29ead4a2d38 390 Pfam PF06725 3D domain 279 356 4.8E-25 T 12-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 YPK_1047 ff52386c64c21d019550d29ead4a2d38 390 Gene3D G3DSA:2.40.240.50 125 264 7.3E-154 T 12-10-2018 YPK_1047 ff52386c64c21d019550d29ead4a2d38 390 SUPERFAMILY SSF50685 25 355 7.32E-111 T 12-10-2018 IPR036908 RlpA-like domain superfamily YPK_1047 ff52386c64c21d019550d29ead4a2d38 390 Pfam PF03562 MltA specific insert domain 102 259 3.4E-42 T 12-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 402 72.882 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 Pfam PF00202 Aminotransferase class-III 24 398 8.2E-138 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 PIRSF PIRSF000521 173 402 4.1E-35 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 PIRSF PIRSF000521 28 156 4.9E-8 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 399 1.2E-154 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 SUPERFAMILY SSF53383 17 399 9.44E-128 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 402 1.1E-209 T 12-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 Gene3D G3DSA:3.90.1150.10 29 392 2.3E-157 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_0245 87d55b13a6d1fb8d54f701c7fc7150fe 405 Gene3D G3DSA:3.40.640.10 59 304 2.3E-157 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1126 0b0580b829316dc37571b0f007f48a09 322 Gene3D G3DSA:1.10.3720.10 87 316 8.6E-17 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1126 0b0580b829316dc37571b0f007f48a09 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 317 2.4E-37 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1126 0b0580b829316dc37571b0f007f48a09 322 SUPERFAMILY SSF161098 92 302 9.35E-17 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1906 c419e214ad182a0a685bcfb289500bcc 538 SUPERFAMILY SSF53850 32 526 4.6E-140 T 12-10-2018 YPK_1906 c419e214ad182a0a685bcfb289500bcc 538 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 83 104 - T 12-10-2018 IPR023765 Solute-binding protein family 5, conserved site YPK_1906 c419e214ad182a0a685bcfb289500bcc 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 453 1.8E-86 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_1906 c419e214ad182a0a685bcfb289500bcc 538 Gene3D G3DSA:3.10.105.10 292 507 4.9E-189 T 12-10-2018 YPK_1906 c419e214ad182a0a685bcfb289500bcc 538 PIRSF PIRSF002741 6 538 2.8E-112 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YPK_1906 c419e214ad182a0a685bcfb289500bcc 538 Gene3D G3DSA:3.40.190.10 41 519 4.9E-189 T 12-10-2018 YPK_1906 c419e214ad182a0a685bcfb289500bcc 538 Gene3D G3DSA:3.90.76.10 67 190 4.9E-189 T 12-10-2018 YPK_3612 0f4fc75ad635b4a48cb3e43e6a31f147 130 Pfam PF01371 Trp repressor protein 38 124 2.3E-29 T 12-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 YPK_3612 0f4fc75ad635b4a48cb3e43e6a31f147 130 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 31 122 1.0E-35 T 12-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 YPK_3612 0f4fc75ad635b4a48cb3e43e6a31f147 130 Gene3D G3DSA:1.10.1270.10 29 129 1.1E-36 T 12-10-2018 IPR038116 TrpR-like superfamily YPK_3612 0f4fc75ad635b4a48cb3e43e6a31f147 130 PIRSF PIRSF003196 7 130 2.0E-41 T 12-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 YPK_3612 0f4fc75ad635b4a48cb3e43e6a31f147 130 TIGRFAM TIGR01321 TrpR: trp operon repressor 35 125 4.9E-35 T 12-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 YPK_3612 0f4fc75ad635b4a48cb3e43e6a31f147 130 Hamap MF_00475 Trp operon repressor [trpR]. 36 129 23.4 T 12-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 YPK_3612 0f4fc75ad635b4a48cb3e43e6a31f147 130 SUPERFAMILY SSF48295 27 125 2.62E-28 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YPK_3499 bb536271f3cdcf0df7913888e98be54b 512 Gene3D G3DSA:3.40.50.300 235 506 5.6E-101 T 12-10-2018 YPK_3499 bb536271f3cdcf0df7913888e98be54b 512 SUPERFAMILY SSF52540 110 502 2.45E-90 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3499 bb536271f3cdcf0df7913888e98be54b 512 Gene3D G3DSA:3.30.450.90 102 234 2.4E-43 T 12-10-2018 YPK_3499 bb536271f3cdcf0df7913888e98be54b 512 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 328 342 - T 12-10-2018 IPR001482 Type II/IV secretion system protein YPK_3499 bb536271f3cdcf0df7913888e98be54b 512 Pfam PF00437 Type II/IV secretion system protein 139 400 1.2E-83 T 12-10-2018 IPR001482 Type II/IV secretion system protein YPK_3426 2f2e20a61d5cfa8e73529409e9acb855 327 SMART SM00257 72 116 5.4E-10 T 12-10-2018 IPR018392 LysM domain YPK_3426 2f2e20a61d5cfa8e73529409e9acb855 327 Gene3D G3DSA:3.10.350.10 65 120 1.9E-10 T 12-10-2018 IPR036779 LysM domain superfamily YPK_3426 2f2e20a61d5cfa8e73529409e9acb855 327 SUPERFAMILY SSF51261 72 324 5.23E-50 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_3426 2f2e20a61d5cfa8e73529409e9acb855 327 Gene3D G3DSA:2.70.70.10 178 327 2.5E-38 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_3426 2f2e20a61d5cfa8e73529409e9acb855 327 Pfam PF01476 LysM domain 73 114 6.4E-9 T 12-10-2018 IPR018392 LysM domain YPK_3426 2f2e20a61d5cfa8e73529409e9acb855 327 Pfam PF01551 Peptidase family M23 227 320 5.7E-32 T 12-10-2018 IPR016047 Peptidase M23 YPK_0288 f8dac1c557d023b0b5dfdfbd193dce1b 110 SUPERFAMILY SSF54843 1 109 1.57E-42 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0288 f8dac1c557d023b0b5dfdfbd193dce1b 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.807 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0288 f8dac1c557d023b0b5dfdfbd193dce1b 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.5E-50 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0288 f8dac1c557d023b0b5dfdfbd193dce1b 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 8.3E-38 T 12-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 YPK_0288 f8dac1c557d023b0b5dfdfbd193dce1b 110 Gene3D G3DSA:3.90.470.10 1 110 2.4E-46 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0288 f8dac1c557d023b0b5dfdfbd193dce1b 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 12-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 Pfam PF01565 FAD binding domain 33 181 7.5E-12 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 SUPERFAMILY SSF51055 634 678 4.71E-8 T 12-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 Gene3D G3DSA:3.40.462.20 226 508 6.0E-121 T 12-10-2018 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 Pfam PF08031 Berberine and berberine like 480 536 5.5E-12 T 12-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 SUPERFAMILY SSF49265 536 637 1.23E-16 T 12-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 Gene3D G3DSA:2.60.40.10 541 628 4.3E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 Gene3D G3DSA:3.30.465.40 10 525 6.0E-121 T 12-10-2018 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 Gene3D G3DSA:2.10.10.20 632 680 1.8E-7 T 12-10-2018 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 SUPERFAMILY SSF56176 5 221 7.48E-23 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_3866 f45b13a38687050977bfbb2a8743cc21 685 SMART SM00060 542 617 3.3E-4 T 12-10-2018 IPR003961 Fibronectin type III GO:0005515 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF52777 2869 3024 2.0E-23 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2748 2763 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.300.30 3677 3775 2.5E-19 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.300.30 2240 2323 7.7E-8 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SMART SM00823 Phosphopantetheine attachment site 598 667 5.6E-4 T 12-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SMART SM00823 Phosphopantetheine attachment site 3793 3843 0.13 T 12-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SMART SM00823 Phosphopantetheine attachment site 2725 2793 0.093 T 12-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.559.10 1383 1559 8.8E-35 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.559.10 2805 3009 7.8E-49 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:1.10.1200.10 594 673 1.4E-11 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF56801 7 567 8.11E-86 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.559.30 3012 3261 1.2E-84 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.559.30 1563 1814 1.1E-76 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 832 848 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.40.47.10 674 1123 8.3E-132 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:1.10.1200.10 2718 2788 1.5E-13 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:1.10.1200.10 3776 3870 1.1E-15 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SMART SM00825 Beta-ketoacyl synthase 684 1090 1.3E-112 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.40.50.12780 10 455 4.0E-104 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.70.3290 1134 1266 5.6E-12 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF52777 3014 3255 1.78E-44 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 927 1035 1.4E-30 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3425 3436 - T 12-10-2018 IPR020845 AMP-binding, conserved site YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.40.50.12780 1834 2238 1.6E-100 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 682 919 2.3E-58 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.40.50.12780 3285 3675 2.5E-109 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1862 2270 4.6E-114 T 12-10-2018 IPR010071 Amino acid adenylation domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3311 3707 1.6E-111 T 12-10-2018 IPR010071 Amino acid adenylation domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF52777 1564 1803 1.56E-39 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF52777 1389 1559 1.78E-18 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.300.30 2623 2701 4.0E-13 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF47336 2721 2789 2.88E-10 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF47336 3787 3855 1.02E-13 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1989 2000 - T 12-10-2018 IPR020845 AMP-binding, conserved site YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.30.300.30 457 584 1.0E-24 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00501 AMP-binding enzyme 16 462 2.6E-61 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00501 AMP-binding enzyme 1841 2245 1.7E-85 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00501 AMP-binding enzyme 3293 3682 8.4E-90 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF56801 3255 3806 1.96E-124 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00668 Condensation domain 2872 3249 2.0E-34 T 12-10-2018 IPR001242 Condensation domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00668 Condensation domain 1388 1805 3.5E-25 T 12-10-2018 IPR001242 Condensation domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF47336 595 696 2.49E-12 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:1.10.1200.10 1282 1357 4.3E-13 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Gene3D G3DSA:3.40.50.150 2336 2622 7.6E-11 T 12-10-2018 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF53901 678 1034 3.67E-73 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF47336 1288 1360 5.23E-8 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00550 Phosphopantetheine attachment site 1290 1353 8.3E-9 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00550 Phosphopantetheine attachment site 2728 2787 6.2E-9 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00550 Phosphopantetheine attachment site 3794 3849 1.1E-6 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 Pfam PF00550 Phosphopantetheine attachment site 603 660 2.9E-9 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain YPK_0751 2db0996e29539553f58d22484e1a8d3b 3875 SUPERFAMILY SSF56801 1826 2682 7.72E-122 T 12-10-2018 YPK_0272 d88428e496b37c12194a938287748596 131 Gene3D G3DSA:3.40.1260.10 1 131 3.6E-57 T 12-10-2018 IPR027396 DsrEFH-like YPK_0272 d88428e496b37c12194a938287748596 131 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 4 131 39.481 T 12-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 YPK_0272 d88428e496b37c12194a938287748596 131 Pfam PF02635 DsrE/DsrF-like family 5 131 5.2E-28 T 12-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein YPK_0272 d88428e496b37c12194a938287748596 131 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 5 131 1.2E-54 T 12-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 YPK_0272 d88428e496b37c12194a938287748596 131 SUPERFAMILY SSF75169 1 131 6.67E-37 T 12-10-2018 IPR027396 DsrEFH-like YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 8.9E-52 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 114 8.4E-12 T 12-10-2018 IPR000014 PAS domain YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 Gene3D G3DSA:3.30.450.20 18 145 1.5E-22 T 12-10-2018 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 Pfam PF08447 PAS fold 31 114 1.8E-14 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 SMART SM00283 269 516 3.7E-75 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 Gene3D G3DSA:1.10.287.950 216 517 1.2E-78 T 12-10-2018 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 SUPERFAMILY SSF55785 23 114 4.54E-24 T 12-10-2018 IPR035965 PAS domain superfamily YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 SMART SM00086 80 120 0.0025 T 12-10-2018 IPR001610 PAC motif YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 SUPERFAMILY SSF58104 242 516 8.5E-66 T 12-10-2018 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 2.1E-40 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 2.1E-40 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 2.1E-40 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1726 25965b9d1551d93049df31da3e70bbe0 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 2.1E-40 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_2578 0604487439ac6832188bb3d647168fa8 424 Gene3D G3DSA:2.40.340.10 331 401 7.3E-145 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2578 0604487439ac6832188bb3d647168fa8 424 SUPERFAMILY SSF53218 180 327 4.32E-43 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily YPK_2578 0604487439ac6832188bb3d647168fa8 424 SUPERFAMILY SSF63882 9 178 1.24E-54 T 12-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2578 0604487439ac6832188bb3d647168fa8 424 Gene3D G3DSA:3.90.105.10 29 177 7.3E-145 T 12-10-2018 YPK_2578 0604487439ac6832188bb3d647168fa8 424 Pfam PF03453 MoeA N-terminal region (domain I and II) 11 170 1.8E-44 T 12-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2578 0604487439ac6832188bb3d647168fa8 424 SMART SM00852 183 320 3.4E-43 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_2578 0604487439ac6832188bb3d647168fa8 424 Gene3D G3DSA:3.40.980.10 28 330 7.3E-145 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily YPK_2578 0604487439ac6832188bb3d647168fa8 424 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 180 316 1.8E-32 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_2578 0604487439ac6832188bb3d647168fa8 424 Gene3D G3DSA:2.170.190.11 53 144 7.3E-145 T 12-10-2018 YPK_2578 0604487439ac6832188bb3d647168fa8 424 SUPERFAMILY SSF63867 330 410 1.7E-24 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2578 0604487439ac6832188bb3d647168fa8 424 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 256 289 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 YPK_2578 0604487439ac6832188bb3d647168fa8 424 Pfam PF00994 Probable molybdopterin binding domain 183 319 4.4E-26 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_2578 0604487439ac6832188bb3d647168fa8 424 Pfam PF03454 MoeA C-terminal region (domain IV) 334 406 3.3E-19 T 12-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_0788 da33eca58164533eddb7c0046ffd4592 407 Gene3D G3DSA:1.20.1250.20 14 391 7.6E-28 T 12-10-2018 YPK_0788 da33eca58164533eddb7c0046ffd4592 407 Pfam PF07690 Major Facilitator Superfamily 22 360 8.1E-21 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0788 da33eca58164533eddb7c0046ffd4592 407 SUPERFAMILY SSF103473 20 395 1.31E-31 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2967 669411f3a55a30bb060c97a5794e1491 407 SUPERFAMILY SSF52777 177 406 9.34E-90 T 12-10-2018 YPK_2967 669411f3a55a30bb060c97a5794e1491 407 SUPERFAMILY SSF47005 107 151 5.49E-11 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 YPK_2967 669411f3a55a30bb060c97a5794e1491 407 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 177 405 5.0E-82 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 YPK_2967 669411f3a55a30bb060c97a5794e1491 407 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 YPK_2967 669411f3a55a30bb060c97a5794e1491 407 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 407 1.0E-189 T 12-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 YPK_2967 669411f3a55a30bb060c97a5794e1491 407 Pfam PF02817 e3 binding domain 114 146 1.5E-11 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 YPK_2967 669411f3a55a30bb060c97a5794e1491 407 Pfam PF00364 Biotin-requiring enzyme 5 77 2.6E-19 T 12-10-2018 IPR000089 Biotin/lipoyl attachment YPK_2967 669411f3a55a30bb060c97a5794e1491 407 Gene3D G3DSA:3.30.559.10 175 407 5.3E-98 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YPK_2967 669411f3a55a30bb060c97a5794e1491 407 SUPERFAMILY SSF51230 2 93 1.57E-24 T 12-10-2018 IPR011053 Single hybrid motif YPK_2967 669411f3a55a30bb060c97a5794e1491 407 Gene3D G3DSA:2.40.50.100 2 79 1.1E-23 T 12-10-2018 YPK_2967 669411f3a55a30bb060c97a5794e1491 407 Gene3D G3DSA:4.10.320.10 103 152 3.8E-22 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 SMART SM00831 22 95 7.4E-18 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Pfam PF00702 haloacid dehalogenase-like hydrolase 365 653 4.5E-19 T 12-10-2018 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Pfam PF00690 Cation transporter/ATPase, N-terminus 24 90 5.2E-16 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 371 377 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Pfam PF00122 E1-E2 ATPase 141 349 3.9E-42 T 12-10-2018 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Gene3D G3DSA:3.40.1110.10 382 545 2.0E-52 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Pfam PF00689 Cation transporting ATPase, C-terminus 722 890 1.2E-17 T 12-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Gene3D G3DSA:1.20.1110.10 684 806 6.9E-9 T 12-10-2018 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Gene3D G3DSA:1.20.1110.10 236 381 1.9E-28 T 12-10-2018 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 SUPERFAMILY SSF81660 364 547 3.14E-35 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 SUPERFAMILY SSF56784 532 682 7.41E-35 T 12-10-2018 IPR036412 HAD-like superfamily YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Gene3D G3DSA:1.20.1110.10 73 145 2.6E-5 T 12-10-2018 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 SUPERFAMILY SSF81665 25 896 9.55E-103 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 12 898 0.0 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 613 728 1.0E-27 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 406 1.6E-19 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Gene3D G3DSA:3.40.50.1000 546 683 2.1E-29 T 12-10-2018 IPR023214 HAD superfamily YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 Gene3D G3DSA:2.70.150.20 146 235 1.4E-14 T 12-10-2018 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 SUPERFAMILY SSF81653 158 269 7.72E-26 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 747 760 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 299 318 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 697 712 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 802 823 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 282 298 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 767 783 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 403 416 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 852 873 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_1744 695fc01968b73d4b7a860bc9d085db2e 899 PRINTS PR01836 Magnesium-transporting ATPase signature 715 726 1.3E-88 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 YPK_0985 8407d75e58871b11b5cfd7bfd8dcd687 408 Gene3D G3DSA:3.20.20.70 9 392 3.6E-110 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0985 8407d75e58871b11b5cfd7bfd8dcd687 408 Pfam PF04055 Radical SAM superfamily 19 188 2.1E-14 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_0985 8407d75e58871b11b5cfd7bfd8dcd687 408 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 281 370 3.0E-19 T 12-10-2018 IPR023885 4Fe4S-binding SPASM domain YPK_0985 8407d75e58871b11b5cfd7bfd8dcd687 408 SUPERFAMILY SSF102114 18 351 1.23E-37 T 12-10-2018 YPK_0985 8407d75e58871b11b5cfd7bfd8dcd687 408 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 173 404 1.0E-14 T 12-10-2018 YPK_0985 8407d75e58871b11b5cfd7bfd8dcd687 408 Pfam PF13186 Iron-sulfur cluster-binding domain 282 342 1.7E-7 T 12-10-2018 IPR023885 4Fe4S-binding SPASM domain YPK_0985 8407d75e58871b11b5cfd7bfd8dcd687 408 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 12 389 1.3E-161 T 12-10-2018 YPK_1079 6a95301710513a3beee45205531d8a29 394 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 15 391 1.7E-170 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 YPK_1079 6a95301710513a3beee45205531d8a29 394 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 17 393 41.955 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 YPK_1079 6a95301710513a3beee45205531d8a29 394 SUPERFAMILY SSF53756 20 357 5.38E-24 T 12-10-2018 YPK_1079 6a95301710513a3beee45205531d8a29 394 Pfam PF02684 Lipid-A-disaccharide synthetase 20 388 3.4E-141 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 YPK_0172 1aca0782781533b1021503070b6aedf5 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_0172 1aca0782781533b1021503070b6aedf5 239 SUPERFAMILY SSF52172 3 126 1.17E-41 T 12-10-2018 IPR011006 CheY-like superfamily YPK_0172 1aca0782781533b1021503070b6aedf5 239 SUPERFAMILY SSF46894 132 234 2.3E-26 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_0172 1aca0782781533b1021503070b6aedf5 239 Gene3D G3DSA:1.10.10.10 130 239 1.5E-39 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0172 1aca0782781533b1021503070b6aedf5 239 SMART SM00862 156 232 1.7E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_0172 1aca0782781533b1021503070b6aedf5 239 Gene3D G3DSA:3.40.50.2300 1 126 3.2E-40 T 12-10-2018 YPK_0172 1aca0782781533b1021503070b6aedf5 239 SMART SM00448 5 116 1.2E-44 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0172 1aca0782781533b1021503070b6aedf5 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 SUPERFAMILY SSF56712 2 609 1.96E-188 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 Pfam PF01751 Toprim domain 4 136 1.8E-18 T 12-10-2018 IPR006171 TOPRIM domain YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 SMART SM00437 281 559 1.3E-103 T 12-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 Gene3D G3DSA:1.10.290.10 290 417 3.1E-174 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 Gene3D G3DSA:2.70.20.10 218 489 3.1E-174 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 Gene3D G3DSA:1.10.460.10 163 603 3.1E-174 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 Gene3D G3DSA:3.40.50.140 2 157 3.6E-63 T 12-10-2018 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 318 333 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 3.8E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 3.8E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 522 536 3.8E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 324 333 3.8E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 403 419 3.8E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 SMART SM00436 129 224 6.8E-36 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 Pfam PF01131 DNA topoisomerase 159 594 6.6E-110 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 SMART SM00493 2 125 5.6E-32 T 12-10-2018 IPR006171 TOPRIM domain YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 632 4.4E-279 T 12-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 YPK_2088 8372240ddc3d74286657c4b7e4aa2dfc 642 Hamap MF_00953 DNA topoisomerase 3 [topB]. 2 642 66.114 T 12-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 Gene3D G3DSA:2.60.40.1840 444 545 8.1E-36 T 12-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 548 870 4.2E-121 T 12-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 Gene3D G3DSA:2.60.40.1730 15 194 1.7E-71 T 12-10-2018 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 SUPERFAMILY SSF63737 1 193 2.88E-50 T 12-10-2018 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 869 0.0 T 12-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 Gene3D G3DSA:1.25.50.10 546 870 7.0E-125 T 12-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 SUPERFAMILY SSF55486 204 450 1.76E-74 T 12-10-2018 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 Gene3D G3DSA:1.10.390.10 280 443 3.9E-65 T 12-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 Gene3D G3DSA:1.10.1740.60 195 279 5.7E-41 T 12-10-2018 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 444 544 2.4E-33 T 12-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 126 141 2.4E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 2.4E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 2.4E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 2.4E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 2.4E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YPK_2645 7b73686235c3850ededd8d939d9dcab2 871 Pfam PF01433 Peptidase family M1 domain 208 439 3.3E-59 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 350 1.6E-143 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 Pfam PF00684 DnaJ central domain 147 207 4.6E-16 T 12-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 SMART SM00271 4 62 4.5E-26 T 12-10-2018 IPR001623 DnaJ domain YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 SUPERFAMILY SSF46565 1 108 1.96E-34 T 12-10-2018 IPR036869 Chaperone J-domain superfamily YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 SUPERFAMILY SSF57938 134 211 4.32E-24 T 12-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 Pfam PF01556 DnaJ C terminal domain 121 333 2.3E-46 T 12-10-2018 IPR002939 Chaperone DnaJ, C-terminal YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 SUPERFAMILY SSF49493 115 262 4.32E-21 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 Gene3D G3DSA:1.10.287.110 1 114 9.2E-37 T 12-10-2018 IPR036869 Chaperone J-domain superfamily YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 Gene3D G3DSA:2.60.260.20 257 360 7.1E-30 T 12-10-2018 YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 PRINTS PR00625 DnaJ domain signature 62 81 4.2E-32 T 12-10-2018 IPR001623 DnaJ domain YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 PRINTS PR00625 DnaJ domain signature 7 25 4.2E-32 T 12-10-2018 IPR001623 DnaJ domain YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 PRINTS PR00625 DnaJ domain signature 25 40 4.2E-32 T 12-10-2018 IPR001623 DnaJ domain YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 PRINTS PR00625 DnaJ domain signature 42 62 4.2E-32 T 12-10-2018 IPR001623 DnaJ domain YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 12-10-2018 IPR018253 DnaJ domain, conserved site YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 SUPERFAMILY SSF49493 259 344 3.53E-22 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 373 42.797 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 Pfam PF00226 DnaJ domain 5 67 6.1E-26 T 12-10-2018 IPR001623 DnaJ domain YPK_3593 91a67e16c6c31a434d097d9eef272ab9 379 Gene3D G3DSA:2.10.230.10 145 211 9.5E-24 T 12-10-2018 YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 Gene3D G3DSA:3.40.50.300 254 497 4.6E-43 T 12-10-2018 YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 SUPERFAMILY SSF52540 7 233 1.15E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 Pfam PF00005 ABC transporter 274 428 2.5E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 SMART SM00382 32 222 1.0E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 SMART SM00382 282 477 0.0012 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 Pfam PF00005 ABC transporter 23 174 2.1E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 Gene3D G3DSA:3.40.50.300 2 238 3.1E-59 T 12-10-2018 YPK_0432 9d15576d26a25d81d88a1850126fc3d6 498 SUPERFAMILY SSF52540 272 488 6.86E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2657 178e753a18dad2312dfb19151d7fe966 440 Gene3D G3DSA:1.10.225.40 353 440 2.2E-41 T 12-10-2018 IPR038198 MukF, C-terminal domain superfamily YPK_2657 178e753a18dad2312dfb19151d7fe966 440 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 75 - T 12-10-2018 IPR010916 TonB box, conserved site YPK_2657 178e753a18dad2312dfb19151d7fe966 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 55.174 T 12-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 YPK_2657 178e753a18dad2312dfb19151d7fe966 440 Pfam PF17192 MukF middle domain 121 281 5.1E-85 T 12-10-2018 IPR033440 Chromosome partition protein MukF, middle domain YPK_2657 178e753a18dad2312dfb19151d7fe966 440 SUPERFAMILY SSF140570 119 281 1.96E-76 T 12-10-2018 IPR036141 MukF, middle domain superfamily YPK_2657 178e753a18dad2312dfb19151d7fe966 440 Gene3D G3DSA:1.20.58.590 119 311 1.6E-87 T 12-10-2018 IPR036141 MukF, middle domain superfamily YPK_2657 178e753a18dad2312dfb19151d7fe966 440 Gene3D G3DSA:1.10.10.10 24 118 1.0E-52 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2657 178e753a18dad2312dfb19151d7fe966 440 Pfam PF17193 MukF C-terminal domain 283 440 1.3E-78 T 12-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain YPK_2657 178e753a18dad2312dfb19151d7fe966 440 SUPERFAMILY SSF46785 8 118 5.17E-50 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2657 178e753a18dad2312dfb19151d7fe966 440 PIRSF PIRSF018282 1 440 4.6E-247 T 12-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 YPK_2657 178e753a18dad2312dfb19151d7fe966 440 Pfam PF03882 MukF winged-helix domain 3 117 3.2E-58 T 12-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain YPK_0572 030c50da84008238539c1a24ee8c0145 658 Pfam PF05860 haemagglutination activity domain 75 207 1.6E-34 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_0572 030c50da84008238539c1a24ee8c0145 658 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 3.4E-7 T 12-10-2018 IPR024973 ESPR domain YPK_0572 030c50da84008238539c1a24ee8c0145 658 Gene3D G3DSA:2.160.20.10 74 351 3.0E-106 T 12-10-2018 IPR012334 Pectin lyase fold YPK_0572 030c50da84008238539c1a24ee8c0145 658 SMART SM00912 88 208 8.4E-48 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_0572 030c50da84008238539c1a24ee8c0145 658 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 515 543 1.6 T 12-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPK_0572 030c50da84008238539c1a24ee8c0145 658 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 353 388 1.3E-4 T 12-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPK_0572 030c50da84008238539c1a24ee8c0145 658 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 317 353 0.019 T 12-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPK_0572 030c50da84008238539c1a24ee8c0145 658 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 582 611 1.5 T 12-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPK_0572 030c50da84008238539c1a24ee8c0145 658 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 107 203 6.6E-24 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_0572 030c50da84008238539c1a24ee8c0145 658 Pfam PF05594 Haemagluttinin repeat 558 607 0.47 T 12-10-2018 IPR008619 Filamentous haemagglutinin repeat YPK_0572 030c50da84008238539c1a24ee8c0145 658 Pfam PF05594 Haemagluttinin repeat 371 424 1.1 T 12-10-2018 IPR008619 Filamentous haemagglutinin repeat YPK_0572 030c50da84008238539c1a24ee8c0145 658 Pfam PF05594 Haemagluttinin repeat 256 333 7.4E-5 T 12-10-2018 IPR008619 Filamentous haemagglutinin repeat YPK_0572 030c50da84008238539c1a24ee8c0145 658 SUPERFAMILY SSF51126 77 356 6.43E-71 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_0565 78f324cf14553a1f19e5f85c976a5dfa 499 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 167 179 - T 12-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 YPK_0565 78f324cf14553a1f19e5f85c976a5dfa 499 SUPERFAMILY SSF56112 145 268 7.01E-16 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily YPK_0565 78f324cf14553a1f19e5f85c976a5dfa 499 Pfam PF00069 Protein kinase domain 152 314 4.1E-10 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 YPK_0565 78f324cf14553a1f19e5f85c976a5dfa 499 SMART SM00220 16 352 0.0065 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 YPK_0565 78f324cf14553a1f19e5f85c976a5dfa 499 Gene3D G3DSA:1.10.510.10 125 350 9.0E-15 T 12-10-2018 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 SMART SM00400 36 90 1.4E-36 T 12-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Pfam PF01807 CHC2 zinc finger 7 100 3.3E-40 T 12-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 TIGRFAM TIGR01391 dnaG: DNA primase 4 419 1.1E-150 T 12-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:1.10.860.10 435 581 9.7E-53 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:3.90.580.10 1 101 4.1E-37 T 12-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Pfam PF13155 Toprim-like 263 348 2.0E-14 T 12-10-2018 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Hamap MF_00974 DNA primase [dnaG]. 4 576 30.407 T 12-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 SUPERFAMILY SSF117023 447 578 2.48E-46 T 12-10-2018 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 SUPERFAMILY SSF57783 4 100 5.27E-35 T 12-10-2018 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 4.7E-44 T 12-10-2018 IPR013264 DNA primase, catalytic core, N-terminal YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:1.20.50.20 368 426 2.6E-28 T 12-10-2018 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 5.4E-35 T 12-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 SUPERFAMILY SSF56731 115 427 1.48E-114 T 12-10-2018 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:3.90.980.10 115 240 1.8E-48 T 12-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily YPK_0635 7864b395b2d16ed221ecee88809660f4 582 SMART SM00766 450 575 2.4E-55 T 12-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Gene3D G3DSA:3.40.1360.10 241 367 2.8E-44 T 12-10-2018 YPK_0635 7864b395b2d16ed221ecee88809660f4 582 SMART SM00493 259 330 1.8E-22 T 12-10-2018 IPR006171 TOPRIM domain YPK_0635 7864b395b2d16ed221ecee88809660f4 582 Pfam PF10410 DnaB-helicase binding domain of primase 370 424 1.6E-12 T 12-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 YPK_1784 59c96ed54f68a2d0c5f2b64266702dc0 293 Hamap MF_00188 Protease HtpX [htpX]. 1 289 25.994 T 12-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 YPK_1784 59c96ed54f68a2d0c5f2b64266702dc0 293 Gene3D G3DSA:3.30.2010.10 64 157 3.9E-36 T 12-10-2018 YPK_1784 59c96ed54f68a2d0c5f2b64266702dc0 293 Pfam PF01435 Peptidase family M48 74 288 5.7E-38 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 YPK_0718 f89b0e8bae82ab7dac0179de26d0212b 272 Pfam PF13144 Chaperone for flagella basal body P-ring formation 64 266 3.3E-55 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPK_0718 f89b0e8bae82ab7dac0179de26d0212b 272 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 131 266 9.3E-40 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPK_0718 f89b0e8bae82ab7dac0179de26d0212b 272 Gene3D G3DSA:2.30.30.760 208 270 9.1E-10 T 12-10-2018 YPK_0718 f89b0e8bae82ab7dac0179de26d0212b 272 Gene3D G3DSA:3.90.1210.10 144 207 2.7E-5 T 12-10-2018 YPK_0718 f89b0e8bae82ab7dac0179de26d0212b 272 SMART SM00858 143 205 1.3E-9 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 YPK_2962 15e5ab29f637dab71eec903f7b18e5ea 44 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.7E-15 T 12-10-2018 IPR012994 Membrane bound YbgT-like YPK_2962 15e5ab29f637dab71eec903f7b18e5ea 44 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 7.8E-20 T 12-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 YPK_1294 767267d63445c786cf3887af6af4e90a 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 2.2E-45 T 12-10-2018 YPK_1294 767267d63445c786cf3887af6af4e90a 424 PIRSF PIRSF001549 2 421 5.1E-125 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 YPK_1294 767267d63445c786cf3887af6af4e90a 424 SUPERFAMILY SSF55681 5 320 1.26E-105 T 12-10-2018 YPK_1294 767267d63445c786cf3887af6af4e90a 424 Gene3D G3DSA:3.30.930.10 2 322 4.7E-118 T 12-10-2018 YPK_1294 767267d63445c786cf3887af6af4e90a 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 4.6E-155 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 YPK_1294 767267d63445c786cf3887af6af4e90a 424 SUPERFAMILY SSF52954 327 419 2.29E-23 T 12-10-2018 YPK_1294 767267d63445c786cf3887af6af4e90a 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 421 33.069 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 YPK_1294 767267d63445c786cf3887af6af4e90a 424 Pfam PF03129 Anticodon binding domain 331 418 1.3E-9 T 12-10-2018 IPR004154 Anticodon-binding YPK_1294 767267d63445c786cf3887af6af4e90a 424 Gene3D G3DSA:3.40.50.800 327 422 1.8E-24 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily YPK_2516 749b7f70d52ccb5109d05173c7e61115 476 Gene3D G3DSA:1.20.1280.70 360 420 9.4E-28 T 12-10-2018 YPK_2516 749b7f70d52ccb5109d05173c7e61115 476 Gene3D G3DSA:3.30.420.10 1 200 4.3E-71 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_2516 749b7f70d52ccb5109d05173c7e61115 476 SUPERFAMILY SSF53098 8 474 1.64E-135 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_2516 749b7f70d52ccb5109d05173c7e61115 476 PIRSF PIRSF000977 2 476 1.7E-206 T 12-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 YPK_2516 749b7f70d52ccb5109d05173c7e61115 476 Pfam PF08411 Exonuclease C-terminal 211 472 6.1E-110 T 12-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 YPK_2516 749b7f70d52ccb5109d05173c7e61115 476 Gene3D G3DSA:2.30.30.450 213 353 3.7E-59 T 12-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily YPK_2516 749b7f70d52ccb5109d05173c7e61115 476 Pfam PF00929 Exonuclease 12 191 2.0E-26 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 Gene3D G3DSA:2.60.40.1250 31 167 3.5E-46 T 12-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 Pfam PF11412 Disulphide bond corrector protein DsbC 39 150 2.0E-36 T 12-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 Pfam PF13899 Thioredoxin-like 491 563 1.3E-12 T 12-10-2018 YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 SUPERFAMILY SSF52833 476 589 9.55E-25 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 SUPERFAMILY SSF74863 38 153 1.07E-42 T 12-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 ProSitePatterns PS00194 Thioredoxin family active site. 499 517 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 Gene3D G3DSA:3.40.30.10 466 591 1.9E-35 T 12-10-2018 YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 198 403 1.8E-20 T 12-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 YPK_3828 2f483c70c6d8505aafe89ce83e784d01 595 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 591 41.063 T 12-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 1.3E-25 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 SUPERFAMILY SSF56801 9 643 1.96E-188 T 12-10-2018 YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 8.5E-20 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 Gene3D G3DSA:3.40.50.12780 52 515 8.8E-104 T 12-10-2018 YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 12-10-2018 IPR020845 AMP-binding, conserved site YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 643 0.0 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 Pfam PF00501 AMP-binding enzyme 83 522 5.7E-92 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 53.14 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 YPK_3921 52773e674751e1f9c5ac2258e155ea72 652 Gene3D G3DSA:3.30.300.30 518 652 6.9E-34 T 12-10-2018 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 23 73 2.7E-7 T 12-10-2018 IPR004176 Clp, N-terminal YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 226 359 5.1E-11 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 SUPERFAMILY SSF52540 184 499 4.44E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 SMART SM00382 596 753 2.9E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 SMART SM00382 221 366 5.5E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 SUPERFAMILY SSF52540 545 838 1.49E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 Gene3D G3DSA:3.40.50.300 367 543 2.9E-36 T 12-10-2018 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 Pfam PF07724 AAA domain (Cdc48 subfamily) 595 762 6.1E-31 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 SUPERFAMILY SSF81923 13 129 9.81E-18 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 Gene3D G3DSA:3.40.50.300 170 365 7.0E-62 T 12-10-2018 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 Gene3D G3DSA:3.40.50.300 549 764 5.6E-62 T 12-10-2018 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 SMART SM01086 767 859 0.0094 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 674 692 9.7E-23 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 707 721 9.7E-23 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 645 663 9.7E-23 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 618 9.7E-23 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 Gene3D G3DSA:1.10.1780.10 1 159 1.7E-31 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_3559 bcec8ff232ad3774fd226a2e72c36b70 862 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 16 850 0.0 T 12-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YPK_1032 86772d879e2489a080c8090410a5f053 228 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 11 226 6.0E-106 T 12-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 YPK_1032 86772d879e2489a080c8090410a5f053 228 Gene3D G3DSA:3.40.600.10 6 228 3.7E-50 T 12-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 YPK_1032 86772d879e2489a080c8090410a5f053 228 SMART SM00927 59 157 3.6E-66 T 12-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 YPK_1032 86772d879e2489a080c8090410a5f053 228 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 228 152.64 T 12-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 YPK_1032 86772d879e2489a080c8090410a5f053 228 SUPERFAMILY SSF52980 9 227 2.09E-80 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YPK_1032 86772d879e2489a080c8090410a5f053 228 Pfam PF02976 DNA mismatch repair enzyme MutH 59 157 1.8E-33 T 12-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 SUPERFAMILY SSF55347 134 354 4.05E-79 T 12-10-2018 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 SUPERFAMILY SSF51735 1 147 2.76E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0141 22b02cdb24a46709ac3182db1772debe 367 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 367 6.9E-212 T 12-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 Gene3D G3DSA:3.30.360.10 135 350 7.7E-151 T 12-10-2018 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 SMART SM00859 3 122 2.9E-24 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 353 6.9E-58 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 33.846 T 12-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 3.7E-23 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 Gene3D G3DSA:3.40.50.720 4 356 7.7E-151 T 12-10-2018 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 12-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_0141 22b02cdb24a46709ac3182db1772debe 367 PIRSF PIRSF000148 1 367 2.6E-69 T 12-10-2018 YPK_3538 cdeb1c94b04323ae3b595b877d1297fe 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 44.959 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 YPK_3538 cdeb1c94b04323ae3b595b877d1297fe 200 SUPERFAMILY SSF52016 3 197 3.34E-60 T 12-10-2018 YPK_3538 cdeb1c94b04323ae3b595b877d1297fe 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 1.4E-97 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 YPK_3538 cdeb1c94b04323ae3b595b877d1297fe 200 Pfam PF00694 Aconitase C-terminal domain 1 125 7.0E-39 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 YPK_3538 cdeb1c94b04323ae3b595b877d1297fe 200 Gene3D G3DSA:3.20.19.10 1 180 7.5E-77 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 YPK_2089 849d44f41eca42614f73e33196b7e532 348 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 2.1E-18 T 12-10-2018 IPR016188 PurM-like, N-terminal domain YPK_2089 849d44f41eca42614f73e33196b7e532 348 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 339 5.7E-28 T 12-10-2018 IPR010918 PurM-like, C-terminal domain YPK_2089 849d44f41eca42614f73e33196b7e532 348 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 313 8.5E-137 T 12-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 YPK_2089 849d44f41eca42614f73e33196b7e532 348 SUPERFAMILY SSF56042 164 339 1.5E-51 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_2089 849d44f41eca42614f73e33196b7e532 348 Gene3D G3DSA:3.30.1330.10 2 162 2.2E-47 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_2089 849d44f41eca42614f73e33196b7e532 348 PIRSF PIRSF036407 1 347 1.2E-118 T 12-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 YPK_2089 849d44f41eca42614f73e33196b7e532 348 SUPERFAMILY SSF55326 7 160 1.79E-40 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_2089 849d44f41eca42614f73e33196b7e532 348 Hamap MF_00625 Selenide, water dikinase [selD]. 5 347 45.773 T 12-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 YPK_2089 849d44f41eca42614f73e33196b7e532 348 Gene3D G3DSA:3.90.650.10 164 347 1.3E-52 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 SUPERFAMILY SSF82114 174 307 1.16E-43 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 1.1E-112 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 Gene3D G3DSA:2.40.30.30 188 310 4.2E-38 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 18 51 2.0E-7 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 PIRSF PIRSF004491 1 310 3.6E-103 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 SMART SM00904 183 307 3.2E-62 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 SUPERFAMILY SSF52374 15 175 1.69E-36 T 12-10-2018 YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 Pfam PF06574 FAD synthetase 12 167 4.3E-57 T 12-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 Gene3D G3DSA:3.40.50.620 1 186 1.9E-60 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3589 b3f38687237ddbd6ed9f0d0c8b755af1 312 Pfam PF01687 Riboflavin kinase 184 306 9.1E-38 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 Pfam PF01568 Molydopterin dinucleotide binding domain 689 800 2.6E-28 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 Pfam PF00384 Molybdopterin oxidoreductase 117 567 5.6E-76 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 Gene3D G3DSA:2.40.40.20 663 808 5.2E-41 T 12-10-2018 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 Gene3D G3DSA:3.40.50.740 51 325 7.5E-74 T 12-10-2018 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 58 113 9.4E-8 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 Gene3D G3DSA:3.40.50.740 364 614 1.3E-43 T 12-10-2018 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 SMART SM00926 54 114 2.9E-7 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 SUPERFAMILY SSF53706 57 690 1.02E-153 T 12-10-2018 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 725 752 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 SUPERFAMILY SSF50692 634 808 6.63E-38 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 59 77 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 12 42 2.9E-5 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_1456 0fabb2c804fccc2ad2e8c210dd9483e8 808 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 12 808 0.0 T 12-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 Gene3D G3DSA:3.40.50.970 472 706 2.9E-112 T 12-10-2018 YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 SUPERFAMILY SSF52518 59 469 2.82E-143 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 886 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 SUPERFAMILY SSF52518 474 701 1.3E-99 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 Gene3D G3DSA:3.40.50.920 707 887 4.7E-74 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 362 449 6.0E-5 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 109 294 2.7E-8 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 PIRSF PIRSF000156 1 887 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 SUPERFAMILY SSF52922 702 885 2.17E-62 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_3491 7a948bd11de7925a593bc9b0ac9d0c02 887 Gene3D G3DSA:3.40.50.970 58 471 1.5E-135 T 12-10-2018 YPK_3945 7d0b164c6b62192ffe7c11ed768f290a 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 YPK_3945 7d0b164c6b62192ffe7c11ed768f290a 251 SUPERFAMILY SSF53335 19 248 2.01E-51 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3945 7d0b164c6b62192ffe7c11ed768f290a 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 250 5.3E-87 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 YPK_3945 7d0b164c6b62192ffe7c11ed768f290a 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 16 250 8.7E-107 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 YPK_3945 7d0b164c6b62192ffe7c11ed768f290a 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 158 172 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 YPK_3945 7d0b164c6b62192ffe7c11ed768f290a 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 250 39.339 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 YPK_3945 7d0b164c6b62192ffe7c11ed768f290a 251 Gene3D G3DSA:3.40.50.150 31 251 5.5E-76 T 12-10-2018 YPK_0994 632a1e103b0d5d9570f4b4fb466a5d12 432 SUPERFAMILY SSF51569 4 425 1.15E-173 T 12-10-2018 YPK_0994 632a1e103b0d5d9570f4b4fb466a5d12 432 Pfam PF08013 Tagatose 6 phosphate kinase 4 424 6.1E-201 T 12-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 YPK_0994 632a1e103b0d5d9570f4b4fb466a5d12 432 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 423 8.4E-199 T 12-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 YPK_0994 632a1e103b0d5d9570f4b4fb466a5d12 432 Gene3D G3DSA:1.10.400.20 287 410 3.6E-174 T 12-10-2018 YPK_0994 632a1e103b0d5d9570f4b4fb466a5d12 432 PIRSF PIRSF009264 1 429 1.7E-211 T 12-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 YPK_0994 632a1e103b0d5d9570f4b4fb466a5d12 432 Gene3D G3DSA:3.20.20.70 8 414 3.6E-174 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 472 1.0E-261 T 12-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 SUPERFAMILY SSF46548 7 157 1.1E-41 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Gene3D G3DSA:3.50.50.60 248 400 1.0E-43 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 459 4.1E-25 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 SUPERFAMILY SSF51971 145 401 1.06E-68 T 12-10-2018 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 324 337 1.5E-37 T 12-10-2018 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 1.5E-37 T 12-10-2018 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 1.5E-37 T 12-10-2018 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 1.5E-37 T 12-10-2018 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 PRINTS PR00419 Adrenodoxin reductase family signature 290 304 1.5E-37 T 12-10-2018 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Gene3D G3DSA:3.50.50.60 147 205 2.1E-10 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 5.3E-38 T 12-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 YPK_0529 69b0dc5bece62592cd93dc3d9d2d2ea5 472 Gene3D G3DSA:1.10.1060.10 13 146 6.8E-35 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_0757 5b1ab759933a39477561c01a2a397ce8 590 Pfam PF00005 ABC transporter 355 502 2.1E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0757 5b1ab759933a39477561c01a2a397ce8 590 Gene3D G3DSA:1.20.1560.10 1 326 3.3E-45 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_0757 5b1ab759933a39477561c01a2a397ce8 590 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0757 5b1ab759933a39477561c01a2a397ce8 590 Pfam PF00664 ABC transporter transmembrane region 23 292 1.7E-20 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_0757 5b1ab759933a39477561c01a2a397ce8 590 SMART SM00382 364 548 3.4E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0757 5b1ab759933a39477561c01a2a397ce8 590 SUPERFAMILY SSF52540 328 571 2.93E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0757 5b1ab759933a39477561c01a2a397ce8 590 SUPERFAMILY SSF90123 9 330 6.28E-52 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_0757 5b1ab759933a39477561c01a2a397ce8 590 Gene3D G3DSA:3.40.50.300 330 583 1.7E-76 T 12-10-2018 YPK_2980 008d21f690a83164cbc9562b8597b54f 164 Hamap MF_00023 SsrA-binding protein [smpB]. 1 164 71.661 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 YPK_2980 008d21f690a83164cbc9562b8597b54f 164 Pfam PF01668 SmpB protein 18 161 6.9E-58 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 YPK_2980 008d21f690a83164cbc9562b8597b54f 164 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 18 126 2.0E-60 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 YPK_2980 008d21f690a83164cbc9562b8597b54f 164 Gene3D G3DSA:2.40.280.10 11 138 9.4E-48 T 12-10-2018 IPR023620 Small protein B YPK_2980 008d21f690a83164cbc9562b8597b54f 164 TIGRFAM TIGR00086 smpB: SsrA-binding protein 18 160 2.5E-54 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 YPK_2980 008d21f690a83164cbc9562b8597b54f 164 SUPERFAMILY SSF74982 12 142 1.96E-51 T 12-10-2018 IPR023620 Small protein B YPK_2980 008d21f690a83164cbc9562b8597b54f 164 ProSitePatterns PS01317 SsrA-binding protein. 36 48 - T 12-10-2018 IPR020081 SsrA-binding protein, conserved site YPK_2661 25a4e74835404380a7460ec3fdfb6aed 60 Gene3D G3DSA:2.20.25.10 8 60 3.9E-23 T 12-10-2018 YPK_2661 25a4e74835404380a7460ec3fdfb6aed 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 26.854 T 12-10-2018 IPR038053 Uncharacterised protein family UPF0434 YPK_2661 25a4e74835404380a7460ec3fdfb6aed 60 SUPERFAMILY SSF158997 1 54 9.42E-20 T 12-10-2018 YPK_2661 25a4e74835404380a7460ec3fdfb6aed 60 Pfam PF03966 Trm112p-like protein 2 41 4.1E-9 T 12-10-2018 IPR005651 Trm112-like YPK_0832 b70e91de335f3d4efd1f00f8abc75654 232 SUPERFAMILY SSF51419 1 225 2.36E-80 T 12-10-2018 IPR029066 PLP-binding barrel YPK_0832 b70e91de335f3d4efd1f00f8abc75654 232 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 226 33.211 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 YPK_0832 b70e91de335f3d4efd1f00f8abc75654 232 PIRSF PIRSF004848 1 232 2.5E-74 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 YPK_0832 b70e91de335f3d4efd1f00f8abc75654 232 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 227 2.2E-92 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 YPK_0832 b70e91de335f3d4efd1f00f8abc75654 232 Pfam PF01168 Alanine racemase, N-terminal domain 7 227 2.0E-27 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_0832 b70e91de335f3d4efd1f00f8abc75654 232 Gene3D G3DSA:3.20.20.10 1 232 6.3E-82 T 12-10-2018 IPR029066 PLP-binding barrel YPK_0832 b70e91de335f3d4efd1f00f8abc75654 232 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 77 91 - T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 Gene3D G3DSA:2.30.30.30 115 195 1.8E-33 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 Gene3D G3DSA:4.10.950.10 196 273 5.2E-37 T 12-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 SMART SM01382 124 251 1.3E-89 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 SUPERFAMILY SSF50249 2 125 1.1E-50 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.9E-34 T 12-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 Gene3D G3DSA:2.40.50.140 1 114 4.6E-51 T 12-10-2018 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.315 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 SUPERFAMILY SSF50104 127 269 1.14E-59 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 1.8E-55 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 12-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 8.0E-132 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 PIRSF PIRSF002158 12 274 1.8E-100 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0286 80a4a136f9f763c7081cd668dd447c61 274 SMART SM01383 42 118 3.6E-48 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_2608 efacffae32df6accc988a0b4cd4cb833 412 SUPERFAMILY SSF53901 4 170 5.21E-31 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2608 efacffae32df6accc988a0b4cd4cb833 412 Gene3D G3DSA:3.40.47.10 4 410 3.5E-140 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2608 efacffae32df6accc988a0b4cd4cb833 412 SUPERFAMILY SSF53901 174 411 4.4E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2608 efacffae32df6accc988a0b4cd4cb833 412 Pfam PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 168 1.8E-7 T 12-10-2018 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal GO:0004421|GO:0008299 Reactome: R-HSA-1989781 YPK_2608 efacffae32df6accc988a0b4cd4cb833 412 Pfam PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal 267 408 1.0E-15 T 12-10-2018 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain GO:0004421|GO:0008299 KEGG: 00072+2.3.3.10|KEGG: 00280+2.3.3.10|KEGG: 00650+2.3.3.10|KEGG: 00900+2.3.3.10|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7571|MetaCyc: PWY-922|Reactome: R-HSA-1989781 YPK_2608 efacffae32df6accc988a0b4cd4cb833 412 Gene3D G3DSA:3.40.47.10 178 331 3.5E-140 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_0133 c8ed296debedd4ec0848a0b133f0b975 231 Gene3D G3DSA:2.60.120.10 11 135 1.1E-98 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_0133 c8ed296debedd4ec0848a0b133f0b975 231 Pfam PF02678 Pirin 11 119 2.0E-37 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 YPK_0133 c8ed296debedd4ec0848a0b133f0b975 231 Gene3D G3DSA:2.60.120.10 7 229 1.1E-98 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_0133 c8ed296debedd4ec0848a0b133f0b975 231 SUPERFAMILY SSF51182 1 231 1.4E-79 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_0133 c8ed296debedd4ec0848a0b133f0b975 231 PIRSF PIRSF006232 1 231 3.9E-55 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 YPK_3892 57086288f292ae1d29412d7fcd401580 334 Pfam PF01032 FecCD transport family 17 327 4.5E-94 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_3892 57086288f292ae1d29412d7fcd401580 334 Gene3D G3DSA:1.10.3470.10 4 334 9.8E-135 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_3892 57086288f292ae1d29412d7fcd401580 334 SUPERFAMILY SSF81345 5 327 4.84E-87 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.4E-20 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 Pfam PF13377 Periplasmic binding protein-like domain 168 329 3.3E-33 T 12-10-2018 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 SUPERFAMILY SSF47413 1 59 3.38E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 SMART SM00354 1 71 6.2E-36 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 12-10-2018 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.2E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.2E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 Gene3D G3DSA:3.40.50.2300 61 305 4.1E-70 T 12-10-2018 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 Gene3D G3DSA:3.40.50.2300 160 289 4.1E-70 T 12-10-2018 YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 SUPERFAMILY SSF53822 60 333 3.34E-85 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1025 3b51a70ef6ef9876b1f8ee21f8837ee4 340 Gene3D G3DSA:1.10.260.40 3 59 3.1E-22 T 12-10-2018 YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 Gene3D G3DSA:2.60.40.10 30 149 3.1E-40 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 Gene3D G3DSA:2.60.40.10 152 243 1.9E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 SUPERFAMILY SSF49584 143 239 3.4E-14 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 SUPERFAMILY SSF49354 23 149 3.92E-42 T 12-10-2018 IPR008962 PapD-like superfamily YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 131 146 2.4E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 29 38 2.4E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 78 99 2.4E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 106 123 2.4E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 PRINTS PR00969 Pili chaperone signature 170 185 2.4E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 237 6.9E-14 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_4043 d55f96eb9d83d2c2d13a828765436c44 243 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 149 6.2E-42 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SMART SM00364 243 262 0.014 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SMART SM00364 73 95 160.0 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SMART SM00364 118 137 0.0018 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SMART SM00364 180 199 0.02 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SMART SM00364 160 179 3.5 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SMART SM00364 201 220 0.019 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SMART SM00364 97 116 0.012 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SMART SM00364 222 241 1.6 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 SUPERFAMILY SSF52058 61 281 4.08E-28 T 12-10-2018 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 Pfam PF12468 Type III secretion system leucine rich repeat protein 1 48 2.7E-17 T 12-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YPK_0745 9854824391a86f3cb233b6d7b56b84fd 301 Gene3D G3DSA:3.80.10.10 18 301 2.4E-57 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily YPK_3575 74e40b0737e9eaeea4c90b8525119416 289 Pfam PF00149 Calcineurin-like phosphoesterase 2 127 4.4E-14 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YPK_3575 74e40b0737e9eaeea4c90b8525119416 289 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 51.5 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 YPK_3575 74e40b0737e9eaeea4c90b8525119416 289 PIRSF PIRSF000903 1 275 1.5E-121 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 YPK_3575 74e40b0737e9eaeea4c90b8525119416 289 Gene3D G3DSA:3.60.21.10 1 279 1.2E-82 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like YPK_3575 74e40b0737e9eaeea4c90b8525119416 289 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 275 1.6E-148 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 YPK_3575 74e40b0737e9eaeea4c90b8525119416 289 SUPERFAMILY SSF56300 1 259 6.38E-58 T 12-10-2018 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 611 46.659 T 12-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Pfam PF04539 Sigma-70 region 3 457 532 3.5E-29 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 SUPERFAMILY SSF88659 508 610 2.32E-25 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 374 599 3.5E-38 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 402 415 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 374 610 7.8E-121 T 12-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Pfam PF04545 Sigma-70, region 4 546 599 1.0E-18 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Gene3D G3DSA:1.10.601.10 113 447 9.9E-148 T 12-10-2018 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Gene3D G3DSA:1.10.10.10 451 527 5.5E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Pfam PF04546 Sigma-70, non-essential region 139 347 3.9E-74 T 12-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Pfam PF04542 Sigma-70 region 2 378 447 1.7E-21 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Gene3D G3DSA:1.10.220.120 1 64 5.3E-31 T 12-10-2018 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.7E-12 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 PRINTS PR00046 Major sigma-70 factor signature 586 597 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 PRINTS PR00046 Major sigma-70 factor signature 402 415 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 PRINTS PR00046 Major sigma-70 factor signature 550 562 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 PRINTS PR00046 Major sigma-70 factor signature 571 586 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 PRINTS PR00046 Major sigma-70 factor signature 426 434 6.3E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Gene3D G3DSA:1.10.10.10 528 612 1.8E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 SUPERFAMILY SSF88659 451 524 1.54E-20 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 Pfam PF03979 Sigma-70 factor, region 1.1 4 79 2.0E-30 T 12-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 571 597 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_0634 8ca25f5eb536d0a603a4e4b83768174b 612 SUPERFAMILY SSF88946 115 445 2.35E-102 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YPK_2823 86d89fe65f03d159068bdf3ff077b789 264 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 7.6E-28 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_2823 86d89fe65f03d159068bdf3ff077b789 264 SUPERFAMILY SSF51658 1 254 8.57E-72 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily YPK_2823 86d89fe65f03d159068bdf3ff077b789 264 Gene3D G3DSA:3.20.20.150 1 261 1.2E-65 T 12-10-2018 YPK_2823 86d89fe65f03d159068bdf3ff077b789 264 PIRSF PIRSF006241 1 261 3.3E-88 T 12-10-2018 IPR026040 Hydroxypyruvate isomerase-like YPK_1598 ec6f27a4fa83100d8e7792bba6f57c29 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1598 ec6f27a4fa83100d8e7792bba6f57c29 240 SUPERFAMILY SSF52540 1 235 1.73E-80 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1598 ec6f27a4fa83100d8e7792bba6f57c29 240 Pfam PF00005 ABC transporter 17 165 8.2E-37 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1598 ec6f27a4fa83100d8e7792bba6f57c29 240 PIRSF PIRSF039085 1 240 1.2E-109 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YPK_1598 ec6f27a4fa83100d8e7792bba6f57c29 240 Gene3D G3DSA:3.40.50.300 1 240 1.2E-79 T 12-10-2018 YPK_1598 ec6f27a4fa83100d8e7792bba6f57c29 240 SMART SM00382 26 213 8.2E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 4 614 52.825 T 12-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 610 3.1E-236 T 12-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 Gene3D G3DSA:3.40.710.10 249 618 7.0E-95 T 12-10-2018 YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 SUPERFAMILY SSF56601 255 610 2.56E-92 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 Gene3D G3DSA:3.30.1390.30 86 161 3.3E-50 T 12-10-2018 YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 607 1.3E-86 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 240 4.1E-45 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 Gene3D G3DSA:3.90.1310.10 65 248 3.3E-50 T 12-10-2018 YPK_3021 dcae439bddbb61409cdf8cc531cdf8e9 631 SUPERFAMILY SSF56519 57 254 2.22E-52 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 YPK_2424 a8ef7b2bfefe031ddf92f41c4d040948 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 131 3.9E-11 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_2424 a8ef7b2bfefe031ddf92f41c4d040948 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YPK_2424 a8ef7b2bfefe031ddf92f41c4d040948 134 Pfam PF00460 Flagella basal body rod protein 7 37 2.3E-10 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_2424 a8ef7b2bfefe031ddf92f41c4d040948 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 4.6E-52 T 12-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 YPK_1604 670bc43e41fc261eb6f49edc08973467 165 Pfam PF00583 Acetyltransferase (GNAT) family 33 133 8.9E-12 T 12-10-2018 IPR000182 GNAT domain YPK_1604 670bc43e41fc261eb6f49edc08973467 165 SUPERFAMILY SSF55729 1 160 1.05E-28 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_1604 670bc43e41fc261eb6f49edc08973467 165 Gene3D G3DSA:3.40.630.30 2 165 4.5E-46 T 12-10-2018 YPK_3447 a8086cd4f4824af07e2ec76f949ecd81 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.207 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 YPK_3447 a8086cd4f4824af07e2ec76f949ecd81 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 9.0E-63 T 12-10-2018 IPR017926 Glutamine amidotransferase YPK_3447 a8086cd4f4824af07e2ec76f949ecd81 545 Pfam PF06418 CTP synthase N-terminus 5 266 7.9E-126 T 12-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 YPK_3447 a8086cd4f4824af07e2ec76f949ecd81 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 7.5E-264 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 YPK_3447 a8086cd4f4824af07e2ec76f949ecd81 545 Gene3D G3DSA:3.40.50.300 1 285 8.0E-136 T 12-10-2018 YPK_3447 a8086cd4f4824af07e2ec76f949ecd81 545 SUPERFAMILY SSF52317 289 541 2.37E-88 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_3447 a8086cd4f4824af07e2ec76f949ecd81 545 SUPERFAMILY SSF52540 3 269 4.91E-122 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3447 a8086cd4f4824af07e2ec76f949ecd81 545 Gene3D G3DSA:3.40.50.880 287 545 1.4E-106 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:3.30.56.50 2 50 8.4E-26 T 12-10-2018 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 8.0E-8 T 12-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 314 364 2.4E-14 T 12-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF52540 390 559 5.26E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 889 17.604 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:3.40.50.10050 685 792 6.1E-37 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF46955 3 50 4.94E-13 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF03144 Elongation factor Tu domain 2 812 879 9.2E-8 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF50447 565 646 4.91E-23 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:2.40.30.10 793 890 2.0E-34 T 12-10-2018 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 57 94 4.6E-16 T 12-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 306 891 4.1E-291 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:3.40.50.300 389 562 1.5E-72 T 12-10-2018 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 ProSitePatterns PS01176 Initiation factor 2 signature. 842 864 - T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF50447 792 889 5.89E-35 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF00009 Elongation factor Tu GTP binding domain 395 552 3.1E-35 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Pfam PF11987 Translation-initiation factor 2 676 781 2.2E-36 T 12-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 394 550 9.9E-34 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 Gene3D G3DSA:2.40.30.10 563 681 1.1E-39 T 12-10-2018 YPK_3730 34b2e5fea219fac73e35ef9a926b122e 892 SUPERFAMILY SSF52156 669 798 1.09E-37 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily YPK_0002 5162596b6f26793daca5a54167218025 366 SMART SM00480 17 362 1.7E-165 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 YPK_0002 5162596b6f26793daca5a54167218025 366 Gene3D G3DSA:3.10.150.10 248 366 1.6E-41 T 12-10-2018 YPK_0002 5162596b6f26793daca5a54167218025 366 PIRSF PIRSF000804 1 366 6.0E-116 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 YPK_0002 5162596b6f26793daca5a54167218025 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 6.9E-44 T 12-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 YPK_0002 5162596b6f26793daca5a54167218025 366 SUPERFAMILY SSF55979 125 244 3.62E-31 T 12-10-2018 YPK_0002 5162596b6f26793daca5a54167218025 366 Gene3D G3DSA:3.10.150.10 1 123 2.2E-42 T 12-10-2018 YPK_0002 5162596b6f26793daca5a54167218025 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 8.1E-38 T 12-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 YPK_0002 5162596b6f26793daca5a54167218025 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 2.1E-111 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 YPK_0002 5162596b6f26793daca5a54167218025 366 SUPERFAMILY SSF55979 245 366 3.14E-37 T 12-10-2018 YPK_0002 5162596b6f26793daca5a54167218025 366 Gene3D G3DSA:3.10.150.10 124 247 4.0E-40 T 12-10-2018 YPK_0002 5162596b6f26793daca5a54167218025 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 3.1E-40 T 12-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 YPK_0002 5162596b6f26793daca5a54167218025 366 SUPERFAMILY SSF55979 1 121 1.77E-26 T 12-10-2018 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 Gene3D G3DSA:2.40.50.140 1 124 1.2E-63 T 12-10-2018 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.507 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 SUPERFAMILY SSF50249 3 123 2.23E-52 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 7.5E-43 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 PIRSF PIRSF002133 1 124 1.9E-54 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.1E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.1E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.1E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.1E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.1E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.1E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0275 3fda9daf32cf0360a89b79e758bae6a6 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 9.8E-71 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 5.8E-7 T 12-10-2018 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 5.8E-7 T 12-10-2018 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 5.8E-7 T 12-10-2018 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 5.8E-7 T 12-10-2018 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 414 1.8E-71 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 Pfam PF07690 Major Facilitator Superfamily 16 405 6.1E-43 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 Gene3D G3DSA:1.20.1720.10 13 247 5.4E-43 T 12-10-2018 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 Gene3D G3DSA:1.20.1250.20 256 455 4.1E-13 T 12-10-2018 YPK_4207 e2d2403d3921f7137cc9a10bd7c5b9b1 474 SUPERFAMILY SSF103473 13 452 6.28E-58 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Pfam PF17176 tRNA-binding domain 549 669 5.4E-44 T 12-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Gene3D G3DSA:3.40.50.11040 3 190 4.3E-66 T 12-10-2018 YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Gene3D G3DSA:1.20.120.890 544 682 4.4E-51 T 12-10-2018 IPR038321 TmcA, C-terminal domain superfamily YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 16 668 50.495 T 12-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Pfam PF05127 Helicase 195 340 2.8E-38 T 12-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 YPK_1368 efdccff34526bee496bec457d5bf41fe 683 SUPERFAMILY SSF55729 358 526 2.05E-13 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_1368 efdccff34526bee496bec457d5bf41fe 683 SUPERFAMILY SSF52540 171 286 7.9E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Pfam PF08351 Domain of unknown function (DUF1726) 65 147 2.9E-6 T 12-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Pfam PF13718 GNAT acetyltransferase 2 380 488 1.0E-11 T 12-10-2018 IPR000182 GNAT domain YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Pfam PF13718 GNAT acetyltransferase 2 490 545 3.6E-8 T 12-10-2018 IPR000182 GNAT domain YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Gene3D G3DSA:3.40.50.12320 191 331 9.7E-49 T 12-10-2018 YPK_1368 efdccff34526bee496bec457d5bf41fe 683 Gene3D G3DSA:3.40.630.30 333 543 6.7E-71 T 12-10-2018 YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 12-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 SUPERFAMILY SSF51658 1 279 1.96E-99 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 Gene3D G3DSA:3.20.20.150 1 282 1.3E-109 T 12-10-2018 YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 12-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 SMART SM00518 3 279 1.2E-128 T 12-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 Pfam PF01261 Xylose isomerase-like TIM barrel 20 239 1.5E-41 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 276 1.0E-106 T 12-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 42.751 T 12-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 YPK_2756 9b1f1685f014888860602924d4ff9ca1 285 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 12-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 YPK_3858 6b48ebe5efa4aa2475fc919f57f50020 345 SUPERFAMILY SSF51395 21 333 1.1E-70 T 12-10-2018 YPK_3858 6b48ebe5efa4aa2475fc919f57f50020 345 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 102 120 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_3858 6b48ebe5efa4aa2475fc919f57f50020 345 Gene3D G3DSA:1.20.120.1460 267 341 7.3E-22 T 12-10-2018 YPK_3858 6b48ebe5efa4aa2475fc919f57f50020 345 PIRSF PIRSF006621 10 332 4.8E-71 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_3858 6b48ebe5efa4aa2475fc919f57f50020 345 Pfam PF01207 Dihydrouridine synthase (Dus) 24 323 1.0E-94 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_3858 6b48ebe5efa4aa2475fc919f57f50020 345 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 12 337 52.693 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 YPK_3858 6b48ebe5efa4aa2475fc919f57f50020 345 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 21 335 7.6E-161 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 YPK_3858 6b48ebe5efa4aa2475fc919f57f50020 345 Gene3D G3DSA:3.20.20.70 19 260 5.2E-72 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1690 28eb2d6676a630ee2eb2a9b5c196c82f 341 Gene3D G3DSA:3.30.160.60 303 341 8.1E-21 T 12-10-2018 YPK_1690 28eb2d6676a630ee2eb2a9b5c196c82f 341 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 10 337 2.7E-123 T 12-10-2018 IPR003770 Endolytic murein transglycosylase YPK_1690 28eb2d6676a630ee2eb2a9b5c196c82f 341 Gene3D G3DSA:3.30.160.60 72 110 1.9E-24 T 12-10-2018 YPK_1690 28eb2d6676a630ee2eb2a9b5c196c82f 341 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 9 333 33.794 T 12-10-2018 IPR003770 Endolytic murein transglycosylase YPK_1690 28eb2d6676a630ee2eb2a9b5c196c82f 341 Pfam PF02618 YceG-like family 44 329 3.1E-83 T 12-10-2018 IPR003770 Endolytic murein transglycosylase YPK_1351 a04e4b1db67b96045ed88b4defb1743d 347 Gene3D G3DSA:3.90.650.10 171 346 2.2E-70 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_1351 a04e4b1db67b96045ed88b4defb1743d 347 SUPERFAMILY SSF55326 7 170 4.19E-53 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_1351 a04e4b1db67b96045ed88b4defb1743d 347 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 345 47.222 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_1351 a04e4b1db67b96045ed88b4defb1743d 347 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 340 1.7E-37 T 12-10-2018 IPR010918 PurM-like, C-terminal domain YPK_1351 a04e4b1db67b96045ed88b4defb1743d 347 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 164 2.7E-16 T 12-10-2018 IPR016188 PurM-like, N-terminal domain YPK_1351 a04e4b1db67b96045ed88b4defb1743d 347 SUPERFAMILY SSF56042 171 342 2.24E-63 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_1351 a04e4b1db67b96045ed88b4defb1743d 347 Gene3D G3DSA:3.30.1330.10 6 170 5.9E-69 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_1351 a04e4b1db67b96045ed88b4defb1743d 347 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 334 7.4E-153 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0150 e96d29eb08061bb34e11d3e35610cece 476 Gene3D G3DSA:3.40.50.2000 3 473 3.2E-188 T 12-10-2018 YPK_0150 e96d29eb08061bb34e11d3e35610cece 476 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 476 1.4E-168 T 12-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 YPK_0150 e96d29eb08061bb34e11d3e35610cece 476 Pfam PF08323 Starch synthase catalytic domain 2 233 2.0E-70 T 12-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 YPK_0150 e96d29eb08061bb34e11d3e35610cece 476 Pfam PF00534 Glycosyl transferases group 1 287 448 8.6E-16 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 YPK_0150 e96d29eb08061bb34e11d3e35610cece 476 SUPERFAMILY SSF53756 1 476 5.23E-116 T 12-10-2018 YPK_0150 e96d29eb08061bb34e11d3e35610cece 476 Gene3D G3DSA:3.40.50.2000 249 458 3.2E-188 T 12-10-2018 YPK_0150 e96d29eb08061bb34e11d3e35610cece 476 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 45.804 T 12-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 YPK_3725 cd9ae0fa8be8e53c473bfe648b2f363e 294 SMART SM00028 96 129 2.0E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_3725 cd9ae0fa8be8e53c473bfe648b2f363e 294 SMART SM00028 62 95 0.0033 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_3725 cd9ae0fa8be8e53c473bfe648b2f363e 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.033 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_3725 cd9ae0fa8be8e53c473bfe648b2f363e 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.3E-5 T 12-10-2018 IPR013105 Tetratricopeptide repeat 2 YPK_3725 cd9ae0fa8be8e53c473bfe648b2f363e 294 Gene3D G3DSA:1.25.40.10 20 294 2.9E-117 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3725 cd9ae0fa8be8e53c473bfe648b2f363e 294 SUPERFAMILY SSF48452 27 283 9.36E-75 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3725 cd9ae0fa8be8e53c473bfe648b2f363e 294 PIRSF PIRSF004654 1 292 1.6E-116 T 12-10-2018 IPR023605 Lipoprotein NlpI YPK_3532 10cec8fa6911a4bcb32343b9a17af266 601 Gene3D G3DSA:3.40.50.12780 3 317 1.9E-53 T 12-10-2018 YPK_3532 10cec8fa6911a4bcb32343b9a17af266 601 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 12-10-2018 IPR020845 AMP-binding, conserved site YPK_3532 10cec8fa6911a4bcb32343b9a17af266 601 Gene3D G3DSA:3.40.50.12780 325 463 2.6E-32 T 12-10-2018 YPK_3532 10cec8fa6911a4bcb32343b9a17af266 601 Pfam PF00501 AMP-binding enzyme 15 470 2.6E-90 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_3532 10cec8fa6911a4bcb32343b9a17af266 601 SUPERFAMILY SSF56801 8 599 8.77E-110 T 12-10-2018 YPK_1173 011f10266b88c8dfc546f53ffc9c812c 228 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.638 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YPK_1173 011f10266b88c8dfc546f53ffc9c812c 228 SMART SM00986 49 210 2.5E-41 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YPK_1173 011f10266b88c8dfc546f53ffc9c812c 228 SMART SM00987 49 210 2.5E-41 T 12-10-2018 YPK_1173 011f10266b88c8dfc546f53ffc9c812c 228 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 5.6E-89 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YPK_1173 011f10266b88c8dfc546f53ffc9c812c 228 Pfam PF03167 Uracil DNA glycosylase superfamily 55 209 5.3E-24 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YPK_1173 011f10266b88c8dfc546f53ffc9c812c 228 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 12-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YPK_1173 011f10266b88c8dfc546f53ffc9c812c 228 SUPERFAMILY SSF52141 6 221 7.85E-97 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YPK_1173 011f10266b88c8dfc546f53ffc9c812c 228 Gene3D G3DSA:3.40.470.10 2 228 8.1E-107 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 YPK_0349 3876e96a5df4d5f3188a6c6975a29ec0 260 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 4.4E-9 T 12-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 YPK_0349 3876e96a5df4d5f3188a6c6975a29ec0 260 Gene3D G3DSA:3.90.79.10 126 256 5.1E-38 T 12-10-2018 YPK_0349 3876e96a5df4d5f3188a6c6975a29ec0 260 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 257 45.192 T 12-10-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 YPK_0349 3876e96a5df4d5f3188a6c6975a29ec0 260 SUPERFAMILY SSF55811 79 241 2.94E-38 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_0349 3876e96a5df4d5f3188a6c6975a29ec0 260 Gene3D G3DSA:3.90.79.20 2 125 1.2E-47 T 12-10-2018 YPK_0349 3876e96a5df4d5f3188a6c6975a29ec0 260 Pfam PF00293 NUDIX domain 131 234 1.4E-14 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_0349 3876e96a5df4d5f3188a6c6975a29ec0 260 SUPERFAMILY SSF55811 2 96 4.87E-32 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_0349 3876e96a5df4d5f3188a6c6975a29ec0 260 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_3189 b4be4af9e9788306d76d76bf7dc23f3e 437 SUPERFAMILY SSF53383 37 433 2.69E-105 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3189 b4be4af9e9788306d76d76bf7dc23f3e 437 PIRSF PIRSF000390 8 437 1.1E-127 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_3189 b4be4af9e9788306d76d76bf7dc23f3e 437 Gene3D G3DSA:3.90.1150.10 306 437 1.8E-57 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_3189 b4be4af9e9788306d76d76bf7dc23f3e 437 Gene3D G3DSA:3.40.640.10 1 305 5.9E-103 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_3189 b4be4af9e9788306d76d76bf7dc23f3e 437 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 43 429 2.0E-117 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_1455 f6a178f48df086282e5dc9a49afe19ee 205 SUPERFAMILY SSF54862 1 199 1.15E-62 T 12-10-2018 YPK_1455 f6a178f48df086282e5dc9a49afe19ee 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1455 f6a178f48df086282e5dc9a49afe19ee 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 3 163 1.4E-77 T 12-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B YPK_1455 f6a178f48df086282e5dc9a49afe19ee 205 Gene3D G3DSA:3.30.70.20 1 199 1.0E-50 T 12-10-2018 YPK_1455 f6a178f48df086282e5dc9a49afe19ee 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.057 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1455 f6a178f48df086282e5dc9a49afe19ee 205 Pfam PF13247 4Fe-4S dicluster domain 58 153 2.1E-27 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3067 ca35704b5c1bf2e5cf3407f42af0588b 373 SMART SM00558 92 215 1.3E-5 T 12-10-2018 IPR003347 JmjC domain YPK_3067 ca35704b5c1bf2e5cf3407f42af0588b 373 Gene3D G3DSA:1.10.10.2510 205 372 2.7E-61 T 12-10-2018 YPK_3067 ca35704b5c1bf2e5cf3407f42af0588b 373 Gene3D G3DSA:2.60.120.650 2 204 1.8E-80 T 12-10-2018 YPK_3067 ca35704b5c1bf2e5cf3407f42af0588b 373 Pfam PF08007 Cupin superfamily protein 10 309 3.5E-102 T 12-10-2018 IPR003347 JmjC domain YPK_3067 ca35704b5c1bf2e5cf3407f42af0588b 373 SUPERFAMILY SSF51197 6 292 3.98E-73 T 12-10-2018 YPK_1652 77ed8622a4dcf2eacc4531d68a901f21 452 Pfam PF00083 Sugar (and other) transporter 57 435 8.5E-56 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 YPK_1652 77ed8622a4dcf2eacc4531d68a901f21 452 SUPERFAMILY SSF103473 12 433 7.06E-68 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1652 77ed8622a4dcf2eacc4531d68a901f21 452 ProSitePatterns PS00217 Sugar transport proteins signature 2. 119 144 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YPK_1652 77ed8622a4dcf2eacc4531d68a901f21 452 Gene3D G3DSA:1.10.286.90 201 235 1.9E-6 T 12-10-2018 YPK_0453 9b2817c09b05e6dcf24a42ce782f84b7 321 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 3.8E-114 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_0453 9b2817c09b05e6dcf24a42ce782f84b7 321 PIRSF PIRSF006621 1 321 6.2E-99 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_0453 9b2817c09b05e6dcf24a42ce782f84b7 321 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 48.789 T 12-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 YPK_0453 9b2817c09b05e6dcf24a42ce782f84b7 321 Gene3D G3DSA:3.20.20.70 7 248 1.0E-75 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0453 9b2817c09b05e6dcf24a42ce782f84b7 321 SUPERFAMILY SSF51395 11 319 6.04E-88 T 12-10-2018 YPK_0453 9b2817c09b05e6dcf24a42ce782f84b7 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_0453 9b2817c09b05e6dcf24a42ce782f84b7 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 3.4E-134 T 12-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 YPK_0453 9b2817c09b05e6dcf24a42ce782f84b7 321 Gene3D G3DSA:1.10.1200.80 253 321 5.4E-7 T 12-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 Gene3D G3DSA:2.40.128.130 449 759 3.6E-70 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 SMART SM00869 494 748 8.9E-45 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 Gene3D G3DSA:2.160.20.20 1 440 6.3E-27 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 Pfam PF03212 Pertactin 311 424 3.3E-21 T 12-10-2018 IPR004899 Pertactin, central region YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 SUPERFAMILY SSF51126 56 445 1.1E-21 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 PRINTS PR01484 Pertactin virulence factor family signature 714 739 1.8E-12 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 PRINTS PR01484 Pertactin virulence factor family signature 627 644 1.8E-12 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 PRINTS PR01484 Pertactin virulence factor family signature 646 669 1.8E-12 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 PRINTS PR01484 Pertactin virulence factor family signature 675 696 1.8E-12 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 PRINTS PR01484 Pertactin virulence factor family signature 535 559 1.8E-12 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 PRINTS PR01484 Pertactin virulence factor family signature 739 759 1.8E-12 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 Pfam PF03797 Autotransporter beta-domain 497 738 5.1E-49 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 327 759 3.8E-97 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_1396 8372bdc4b8039265581c2c9d82a9f0ab 759 SUPERFAMILY SSF103515 463 759 7.19E-51 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_4072 b37776412cc504a806667f28edc5e243 287 Pfam PF01177 Asp/Glu/Hydantoin racemase 31 239 5.7E-25 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_4072 b37776412cc504a806667f28edc5e243 287 Gene3D G3DSA:3.40.50.1860 30 265 1.1E-90 T 12-10-2018 YPK_4072 b37776412cc504a806667f28edc5e243 287 Gene3D G3DSA:3.40.50.1860 118 231 1.1E-90 T 12-10-2018 YPK_4072 b37776412cc504a806667f28edc5e243 287 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 93 101 - T 12-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_4072 b37776412cc504a806667f28edc5e243 287 Hamap MF_00258 Glutamate racemase [murI]. 26 278 33.958 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_4072 b37776412cc504a806667f28edc5e243 287 SUPERFAMILY SSF53681 131 283 4.14E-32 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_4072 b37776412cc504a806667f28edc5e243 287 SUPERFAMILY SSF53681 29 129 3.47E-31 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_4072 b37776412cc504a806667f28edc5e243 287 TIGRFAM TIGR00067 glut_race: glutamate racemase 29 274 2.3E-84 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_4072 b37776412cc504a806667f28edc5e243 287 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 204 214 - T 12-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_2070 28ffda3de7bf2647417a48c451db5a6c 545 PIRSF PIRSF002741 1 545 3.4E-115 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YPK_2070 28ffda3de7bf2647417a48c451db5a6c 545 SUPERFAMILY SSF53850 38 527 1.03E-145 T 12-10-2018 YPK_2070 28ffda3de7bf2647417a48c451db5a6c 545 Gene3D G3DSA:3.40.190.10 43 526 1.2E-210 T 12-10-2018 YPK_2070 28ffda3de7bf2647417a48c451db5a6c 545 Gene3D G3DSA:3.90.76.10 73 196 1.2E-210 T 12-10-2018 YPK_2070 28ffda3de7bf2647417a48c451db5a6c 545 Gene3D G3DSA:3.10.105.10 299 514 1.2E-210 T 12-10-2018 YPK_2070 28ffda3de7bf2647417a48c451db5a6c 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 465 1.2E-86 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_2070 28ffda3de7bf2647417a48c451db5a6c 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 88 110 - T 12-10-2018 IPR023765 Solute-binding protein family 5, conserved site YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 Gene3D G3DSA:3.40.630.30 293 441 1.3E-38 T 12-10-2018 YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 Gene3D G3DSA:3.40.1160.10 7 292 7.1E-86 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 Pfam PF00696 Amino acid kinase family 25 266 1.8E-31 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 440 2.6E-201 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 Pfam PF00583 Acetyltransferase (GNAT) family 335 412 1.9E-7 T 12-10-2018 IPR000182 GNAT domain YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 441 240.354 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 PIRSF PIRSF000423 1 441 3.5E-211 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 SUPERFAMILY SSF53633 4 290 4.19E-70 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_1045 34c42364b2d6391d564660ffbf0c0294 441 SUPERFAMILY SSF55729 296 418 2.96E-19 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_1599 418cee8065e67993cb7d276e7762e0d9 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 216 1.9E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1599 418cee8065e67993cb7d276e7762e0d9 218 SUPERFAMILY SSF161098 13 201 1.7E-41 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1599 418cee8065e67993cb7d276e7762e0d9 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 6.8E-30 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_1599 418cee8065e67993cb7d276e7762e0d9 218 Gene3D G3DSA:1.10.3720.10 1 216 3.0E-52 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2104 8b3c4c7ede4b98601591ea9eb14a98e2 301 Gene3D G3DSA:3.40.190.10 165 266 6.1E-54 T 12-10-2018 YPK_2104 8b3c4c7ede4b98601591ea9eb14a98e2 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.3E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2104 8b3c4c7ede4b98601591ea9eb14a98e2 301 SUPERFAMILY SSF46785 3 83 1.51E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2104 8b3c4c7ede4b98601591ea9eb14a98e2 301 Gene3D G3DSA:1.10.10.10 2 90 4.7E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2104 8b3c4c7ede4b98601591ea9eb14a98e2 301 Pfam PF03466 LysR substrate binding domain 88 295 2.8E-34 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2104 8b3c4c7ede4b98601591ea9eb14a98e2 301 Gene3D G3DSA:3.40.190.10 91 292 6.1E-54 T 12-10-2018 YPK_2104 8b3c4c7ede4b98601591ea9eb14a98e2 301 SUPERFAMILY SSF53850 89 298 5.07E-36 T 12-10-2018 YPK_3989 99b3a2154e939fcfbc4b17c054973f7e 415 SUPERFAMILY SSF46548 13 88 2.09E-15 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_3989 99b3a2154e939fcfbc4b17c054973f7e 415 Gene3D G3DSA:1.10.1060.10 3 99 4.3E-9 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_3989 99b3a2154e939fcfbc4b17c054973f7e 415 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 10 414 2.2E-231 T 12-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 YPK_3989 99b3a2154e939fcfbc4b17c054973f7e 415 Pfam PF13183 4Fe-4S dicluster domain 13 77 8.8E-10 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3989 99b3a2154e939fcfbc4b17c054973f7e 415 Pfam PF02754 Cysteine-rich domain 170 256 3.3E-14 T 12-10-2018 IPR004017 Cysteine-rich domain YPK_3989 99b3a2154e939fcfbc4b17c054973f7e 415 Pfam PF02754 Cysteine-rich domain 312 395 1.3E-13 T 12-10-2018 IPR004017 Cysteine-rich domain YPK_3989 99b3a2154e939fcfbc4b17c054973f7e 415 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 63 74 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1566 0b818cc1bf6f14993301593e1aa76716 325 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 12-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1566 0b818cc1bf6f14993301593e1aa76716 325 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 12-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1566 0b818cc1bf6f14993301593e1aa76716 325 Pfam PF00146 NADH dehydrogenase 17 316 7.1E-120 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1566 0b818cc1bf6f14993301593e1aa76716 325 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 323 23.902 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_4215 ceefa720730dc24a1494ba524724983e 153 Gene3D G3DSA:1.10.10.10 3 57 8.0E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_4215 ceefa720730dc24a1494ba524724983e 153 SUPERFAMILY SSF46785 5 67 2.04E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_4215 ceefa720730dc24a1494ba524724983e 153 Pfam PF01037 Lrp/AsnC ligand binding domain 77 144 4.5E-17 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPK_4215 ceefa720730dc24a1494ba524724983e 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 3.7E-14 T 12-10-2018 YPK_4215 ceefa720730dc24a1494ba524724983e 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPK_4215 ceefa720730dc24a1494ba524724983e 153 Gene3D G3DSA:3.30.70.920 59 141 9.0E-36 T 12-10-2018 YPK_4215 ceefa720730dc24a1494ba524724983e 153 SUPERFAMILY SSF54909 68 153 2.15E-19 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_4215 ceefa720730dc24a1494ba524724983e 153 SMART SM00344 7 114 4.2E-42 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 YPK_4215 ceefa720730dc24a1494ba524724983e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.7E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_4215 ceefa720730dc24a1494ba524724983e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.7E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_4215 ceefa720730dc24a1494ba524724983e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.7E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_2498 dc3b118ee56d9268ac51c5d7a3700a3f 430 PIRSF PIRSF006066 1 428 6.5E-176 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 YPK_2498 dc3b118ee56d9268ac51c5d7a3700a3f 430 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 3.3E-131 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 YPK_2498 dc3b118ee56d9268ac51c5d7a3700a3f 430 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 417 3.2E-113 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YPK_1097 584ab34b47768699a051cd067dcedfb9 188 Gene3D G3DSA:3.40.50.1000 4 188 1.5E-65 T 12-10-2018 IPR023214 HAD superfamily YPK_1097 584ab34b47768699a051cd067dcedfb9 188 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 154 6.4E-40 T 12-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 YPK_1097 584ab34b47768699a051cd067dcedfb9 188 SUPERFAMILY SSF56784 3 184 4.61E-53 T 12-10-2018 IPR036412 HAD-like superfamily YPK_1097 584ab34b47768699a051cd067dcedfb9 188 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 6 181 2.2E-93 T 12-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 YPK_1097 584ab34b47768699a051cd067dcedfb9 188 Pfam PF13242 HAD-hyrolase-like 109 179 3.4E-12 T 12-10-2018 YPK_1097 584ab34b47768699a051cd067dcedfb9 188 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 153 2.9E-37 T 12-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 YPK_1097 584ab34b47768699a051cd067dcedfb9 188 PIRSF PIRSF004682 1 188 4.9E-67 T 12-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Pfam PF00975 Thioesterase domain 1610 1708 4.6E-13 T 12-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Gene3D G3DSA:3.30.300.30 1413 1498 8.2E-13 T 12-10-2018 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 591 984 1.1E-112 T 12-10-2018 IPR010071 Amino acid adenylation domain YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 SUPERFAMILY SSF53335 1237 1429 4.3E-25 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Gene3D G3DSA:3.40.50.150 1109 1412 8.1E-45 T 12-10-2018 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 ProSitePatterns PS00455 Putative AMP-binding domain signature. 703 714 - T 12-10-2018 IPR020845 AMP-binding, conserved site YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Pfam PF00501 AMP-binding enzyme 573 960 3.9E-85 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Gene3D G3DSA:3.30.559.10 76 246 2.1E-37 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Gene3D G3DSA:1.10.10.1830 12 65 3.0E-12 T 12-10-2018 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1531 1546 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Pfam PF00550 Phosphopantetheine attachment site 1521 1577 2.5E-4 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Gene3D G3DSA:3.30.559.30 249 517 1.3E-79 T 12-10-2018 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 SUPERFAMILY SSF47336 1504 1578 2.49E-9 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 SUPERFAMILY SSF52777 77 263 2.22E-17 T 12-10-2018 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Gene3D G3DSA:3.40.50.12780 561 952 6.3E-106 T 12-10-2018 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Pfam PF08242 Methyltransferase domain 1262 1361 1.2E-16 T 12-10-2018 IPR013217 Methyltransferase type 12 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 SUPERFAMILY SSF52777 253 505 6.34E-41 T 12-10-2018 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Gene3D G3DSA:3.30.300.30 954 1073 2.7E-9 T 12-10-2018 YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 SUPERFAMILY SSF53474 1605 1892 5.64E-33 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Gene3D G3DSA:1.10.1200.10 1499 1583 4.9E-14 T 12-10-2018 IPR036736 ACP-like superfamily YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 Pfam PF00668 Condensation domain 117 505 1.1E-29 T 12-10-2018 IPR001242 Condensation domain YPK_0752 b36ebcac2ca5b76d9a556fa49a92dc61 1897 SUPERFAMILY SSF56801 531 1492 6.41E-129 T 12-10-2018 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 SUPERFAMILY SSF52518 576 793 7.23E-51 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Pfam PF02779 Transketolase, pyrimidine binding domain 592 787 2.4E-65 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Gene3D G3DSA:1.10.287.1150 84 166 3.7E-30 T 12-10-2018 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Gene3D G3DSA:3.40.50.11610 723 929 6.3E-172 T 12-10-2018 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 SUPERFAMILY SSF52518 120 541 3.2E-88 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 SMART SM00861 593 786 9.2E-62 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 790 932 9.2E-53 T 12-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Gene3D G3DSA:3.40.50.970 167 533 4.1E-148 T 12-10-2018 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 49 1.8E-16 T 12-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 932 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 PIRSF PIRSF000157 1 934 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Gene3D G3DSA:3.40.50.12470 556 802 6.3E-172 T 12-10-2018 YPK_2968 e21933b9adfa4f9a1fecfdcfbb1971f0 935 Pfam PF00676 Dehydrogenase E1 component 223 514 1.2E-50 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 YPK_1650 98abf858745c5ebf8614cbdfd7267ce1 339 SUPERFAMILY SSF51430 1 313 1.7E-92 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_1650 98abf858745c5ebf8614cbdfd7267ce1 339 Gene3D G3DSA:3.20.20.100 1 326 5.8E-104 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_1650 98abf858745c5ebf8614cbdfd7267ce1 339 Pfam PF00248 Aldo/keto reductase family 15 309 9.8E-67 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1088 0.0 T 12-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 SUPERFAMILY SSF52540 370 811 1.49E-104 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 Gene3D G3DSA:3.40.50.300 334 809 1.3E-203 T 12-10-2018 YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 Gene3D G3DSA:1.10.10.160 79 187 3.6E-128 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 SUPERFAMILY SSF52540 1 347 5.31E-124 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 SUPERFAMILY SSF52980 819 1121 4.83E-98 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1123 21.055 T 12-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 807 7.3E-302 T 12-10-2018 YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 Gene3D G3DSA:1.10.10.990 865 936 5.2E-27 T 12-10-2018 YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 PIRSF PIRSF000980 1 1123 0.0 T 12-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 Gene3D G3DSA:3.40.50.10930 4 315 3.6E-128 T 12-10-2018 YPK_1041 a373db7ea6ffd9b806112d7ff859af18 1123 Gene3D G3DSA:1.10.486.10 456 664 1.3E-203 T 12-10-2018 YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 Gene3D G3DSA:1.10.8.420 1 43 6.9E-16 T 12-10-2018 YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 SMART SM00493 71 156 1.1E-17 T 12-10-2018 IPR006171 TOPRIM domain YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 TIGRFAM TIGR00615 recR: recombination protein RecR 1 187 3.3E-77 T 12-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 Pfam PF02132 RecR protein 31 67 1.9E-14 T 12-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 ProSitePatterns PS01300 RecR protein signature. 47 68 - T 12-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 SUPERFAMILY SSF111304 2 189 6.67E-68 T 12-10-2018 IPR023627 Recombination protein RecR YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 Gene3D G3DSA:3.40.1360.10 67 189 5.9E-38 T 12-10-2018 YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 Pfam PF13662 Toprim domain 72 162 8.6E-21 T 12-10-2018 IPR006171 TOPRIM domain YPK_3196 fb19d530514f2b88c893d694cfa9be0e 191 Hamap MF_00017 Recombination protein RecR [recR]. 1 189 99.012 T 12-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 YPK_3978 e2920b04b1327f740abc8394330bf65c 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 6.7E-94 T 12-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 YPK_3978 e2920b04b1327f740abc8394330bf65c 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3978 e2920b04b1327f740abc8394330bf65c 222 Pfam PF00005 ABC transporter 18 165 8.4E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3978 e2920b04b1327f740abc8394330bf65c 222 Gene3D G3DSA:3.40.50.300 1 221 4.6E-62 T 12-10-2018 YPK_3978 e2920b04b1327f740abc8394330bf65c 222 SMART SM00382 27 214 3.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3978 e2920b04b1327f740abc8394330bf65c 222 SUPERFAMILY SSF52540 1 216 2.18E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 1.2E-149 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 Gene3D G3DSA:3.30.930.10 1 214 5.3E-110 T 12-10-2018 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 SUPERFAMILY SSF55681 8 292 4.91E-134 T 12-10-2018 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 Gene3D G3DSA:1.20.58.180 215 297 7.8E-34 T 12-10-2018 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.449 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 301 1.2E-174 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.1E-71 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.1E-71 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.1E-71 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.1E-71 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.1E-71 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_0022 2a0f2bd1e7f38c94e65f09768b3120b2 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.1E-71 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 239 319 1.9E-14 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 Pfam PF03572 Peptidase family S41 355 528 5.7E-53 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 Gene3D G3DSA:2.30.42.10 245 337 4.2E-16 T 12-10-2018 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 Gene3D G3DSA:3.90.226.10 338 544 1.6E-51 T 12-10-2018 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 SMART SM00245 325 530 3.0E-81 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 197 550 2.0E-126 T 12-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 SMART SM00228 245 322 1.3E-9 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 SUPERFAMILY SSF52096 165 539 6.79E-70 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 SUPERFAMILY SSF50156 215 346 1.4E-16 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 YPK_1783 9f21e618d324f5ba9a33ac1efeaafd86 692 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 533 666 7.6E-41 T 12-10-2018 IPR020992 Tail specific protease, C-terminal YPK_3444 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 SUPERFAMILY SSF102114 24 117 9.42E-7 T 12-10-2018 YPK_3444 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 4.3E-112 T 12-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 YPK_3444 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 36.581 T 12-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 YPK_3444 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 Gene3D G3DSA:3.20.20.70 2 223 3.6E-56 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3444 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 PIRSF PIRSF000370 1 223 7.2E-71 T 12-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 YPK_3444 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 Pfam PF04055 Radical SAM superfamily 26 124 8.0E-9 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_3444 9f3f53d6841cbdf7c2e7c5bf7e32c8e9 223 Pfam PF13394 4Fe-4S single cluster domain 24 128 8.3E-13 T 12-10-2018 YPK_0399 dee64095461ffc0233cc0186953a55a1 1177 Pfam PF06761 Intracellular multiplication and human macrophage-killing 508 821 2.1E-77 T 12-10-2018 IPR009612 ImcF-related YPK_0399 dee64095461ffc0233cc0186953a55a1 1177 SUPERFAMILY SSF52540 113 295 3.6E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0399 dee64095461ffc0233cc0186953a55a1 1177 Pfam PF06744 Type VI secretion protein IcmF C-terminal 929 1125 3.6E-58 T 12-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal YPK_0399 dee64095461ffc0233cc0186953a55a1 1177 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 26 1174 0.0 T 12-10-2018 IPR017731 Type VI secretion system, IcmF YPK_0399 dee64095461ffc0233cc0186953a55a1 1177 Gene3D G3DSA:3.40.50.300 127 304 7.3E-7 T 12-10-2018 YPK_0399 dee64095461ffc0233cc0186953a55a1 1177 Pfam PF14331 ImcF-related N-terminal domain 203 452 1.3E-70 T 12-10-2018 IPR025743 ImcF-related, N-terminal domain YPK_0364 bddb1034745e73c1c1299242f56c562a 532 Gene3D G3DSA:1.20.1220.12 411 532 8.3E-50 T 12-10-2018 YPK_0364 bddb1034745e73c1c1299242f56c562a 532 PIRSF PIRSF001363 2 532 5.4E-249 T 12-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 YPK_0364 bddb1034745e73c1c1299242f56c562a 532 Gene3D G3DSA:3.20.20.360 2 410 8.9E-195 T 12-10-2018 YPK_0364 bddb1034745e73c1c1299242f56c562a 532 SUPERFAMILY SSF51645 11 531 9.02E-188 T 12-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 YPK_0364 bddb1034745e73c1c1299242f56c562a 532 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 23 531 6.2E-251 T 12-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 YPK_0364 bddb1034745e73c1c1299242f56c562a 532 Pfam PF01274 Malate synthase 12 531 4.5E-207 T 12-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 YPK_4159 9ab99f9e3e64a0bcb7222fa44029c815 215 SUPERFAMILY SSF53271 2 212 3.98E-50 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_4159 9ab99f9e3e64a0bcb7222fa44029c815 215 Pfam PF00156 Phosphoribosyl transferase domain 49 159 9.7E-12 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YPK_4159 9ab99f9e3e64a0bcb7222fa44029c815 215 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 215 35.258 T 12-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_4159 9ab99f9e3e64a0bcb7222fa44029c815 215 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 1.6E-66 T 12-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_4159 9ab99f9e3e64a0bcb7222fa44029c815 215 Gene3D G3DSA:3.40.50.2020 1 213 9.1E-78 T 12-10-2018 YPK_2129 22be9c7a9fae2741bf230cf90f43673a 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 12-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 YPK_2129 22be9c7a9fae2741bf230cf90f43673a 114 Gene3D G3DSA:3.30.1330.40 1 114 5.4E-34 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YPK_2129 22be9c7a9fae2741bf230cf90f43673a 114 Pfam PF01042 Endoribonuclease L-PSP 4 113 1.8E-25 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YPK_2129 22be9c7a9fae2741bf230cf90f43673a 114 SUPERFAMILY SSF55298 2 114 1.32E-26 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YPK_2245 0f71c391e259d27f3c4909e55e050f13 165 SUPERFAMILY SSF52833 25 161 1.68E-34 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_2245 0f71c391e259d27f3c4909e55e050f13 165 Gene3D G3DSA:3.40.30.10 18 165 2.2E-36 T 12-10-2018 YPK_2245 0f71c391e259d27f3c4909e55e050f13 165 Pfam PF00578 AhpC/TSA family 28 141 1.7E-19 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YPK_0239 f87a4a01b09297c9553f074550f7fce1 681 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 75 681 1.1E-247 T 12-10-2018 IPR010100 TonB-dependent copper receptor YPK_0239 f87a4a01b09297c9553f074550f7fce1 681 SUPERFAMILY SSF56935 60 681 9.16E-86 T 12-10-2018 YPK_0239 f87a4a01b09297c9553f074550f7fce1 681 Gene3D G3DSA:2.170.130.10 70 180 2.2E-13 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_0239 f87a4a01b09297c9553f074550f7fce1 681 Gene3D G3DSA:2.40.170.20 185 681 1.2E-58 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_0239 f87a4a01b09297c9553f074550f7fce1 681 Pfam PF07715 TonB-dependent Receptor Plug Domain 86 173 6.7E-13 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_0239 f87a4a01b09297c9553f074550f7fce1 681 Pfam PF00593 TonB dependent receptor 228 680 1.3E-37 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_1326 8ef116863a6e7af25c31d83e8d73f86a 112 SUPERFAMILY SSF160113 56 109 4.97E-15 T 12-10-2018 IPR036913 YegP-like superfamily YPK_1326 8ef116863a6e7af25c31d83e8d73f86a 112 Pfam PF07411 Domain of unknown function (DUF1508) 11 58 1.8E-23 T 12-10-2018 IPR010879 Domain of unknown function DUF1508 YPK_1326 8ef116863a6e7af25c31d83e8d73f86a 112 Pfam PF07411 Domain of unknown function (DUF1508) 63 109 3.5E-18 T 12-10-2018 IPR010879 Domain of unknown function DUF1508 YPK_1326 8ef116863a6e7af25c31d83e8d73f86a 112 Gene3D G3DSA:2.30.29.80 2 112 8.9E-46 T 12-10-2018 YPK_1326 8ef116863a6e7af25c31d83e8d73f86a 112 SUPERFAMILY SSF160113 4 60 2.88E-19 T 12-10-2018 IPR036913 YegP-like superfamily YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 Hamap MF_01534 HTH-type transcriptional activator RhaS [rhaS]. 1 273 57.013 T 12-10-2018 IPR023609 Transcription regulator HTH, RhaS GO:0003700|GO:0006355|GO:0019299 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 224 266 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 SUPERFAMILY SSF46689 223 272 1.43E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 Gene3D G3DSA:1.10.10.60 166 273 3.6E-27 T 12-10-2018 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 SMART SM00342 187 270 7.5E-28 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 SUPERFAMILY SSF46689 171 221 6.0E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 SUPERFAMILY SSF51215 17 157 7.06E-14 T 12-10-2018 IPR037923 Transcription regulator HTH-like YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 254 1.8E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 270 1.8E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 Pfam PF02311 AraC-like ligand binding domain 18 154 2.5E-25 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 Gene3D G3DSA:2.60.120.10 3 85 8.0E-9 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_3842 6366d9a9ea16f7adbae1fc9228d6b340 273 Pfam PF12833 Helix-turn-helix domain 193 271 6.7E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 SUPERFAMILY SSF55174 1 55 2.21E-11 T 12-10-2018 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 Gene3D G3DSA:3.30.70.1560 128 209 2.7E-61 T 12-10-2018 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 SMART SM00363 1 69 3.0E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 6.5E-58 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 SUPERFAMILY SSF55120 61 227 2.24E-47 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 Pfam PF01479 S4 domain 1 46 6.0E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 Pfam PF00849 RNA pseudouridylate synthase 62 192 1.2E-18 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 Gene3D G3DSA:3.10.290.10 1 62 8.1E-21 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 Gene3D G3DSA:3.30.70.580 63 227 2.7E-61 T 12-10-2018 YPK_2793 eb9a9e62570b188a4832b8ca77542ce0 235 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 Gene3D G3DSA:1.10.3120.10 116 417 1.2E-111 T 12-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 TIGRFAM TIGR00115 tig: trigger factor 13 412 4.8E-144 T 12-10-2018 IPR005215 Trigger factor GO:0015031 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 Gene3D G3DSA:3.30.70.1050 1 115 1.9E-43 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 230 6.0E-14 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 SUPERFAMILY SSF109998 248 429 4.32E-48 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 PIRSF PIRSF003095 1 434 3.7E-130 T 12-10-2018 IPR005215 Trigger factor GO:0015031 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 SUPERFAMILY SSF102735 1 131 1.7E-41 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 Hamap MF_00303 Trigger factor [tig]. 1 418 21.948 T 12-10-2018 IPR005215 Trigger factor GO:0015031 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 3.3E-44 T 12-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 Gene3D G3DSA:3.10.50.40 150 246 1.2E-111 T 12-10-2018 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 1.1E-40 T 12-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 YPK_3235 2a4e7e7a4452dd643fdf525ec2a51a89 434 SUPERFAMILY SSF54534 96 240 9.82E-37 T 12-10-2018 YPK_0972 10991cb2299d93454a516d4d71ccb570 400 Pfam PF07745 Glycosyl hydrolase family 53 40 399 9.3E-123 T 12-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 YPK_0972 10991cb2299d93454a516d4d71ccb570 400 Gene3D G3DSA:3.20.20.80 20 400 3.0E-146 T 12-10-2018 YPK_0972 10991cb2299d93454a516d4d71ccb570 400 SUPERFAMILY SSF51445 14 399 4.15E-98 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_4160 f240eaba6b87a5a28847c019df81a221 238 SUPERFAMILY SSF54211 1 181 6.58E-44 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_4160 f240eaba6b87a5a28847c019df81a221 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 45.269 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 YPK_4160 f240eaba6b87a5a28847c019df81a221 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 9.7E-111 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 YPK_4160 f240eaba6b87a5a28847c019df81a221 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 12-10-2018 IPR018336 Ribonuclease PH, conserved site YPK_4160 f240eaba6b87a5a28847c019df81a221 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 222 1.6E-10 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_4160 f240eaba6b87a5a28847c019df81a221 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 2.4E-24 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_4160 f240eaba6b87a5a28847c019df81a221 238 SUPERFAMILY SSF55666 153 237 1.27E-25 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_4160 f240eaba6b87a5a28847c019df81a221 238 Gene3D G3DSA:3.30.230.70 10 238 6.0E-65 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 YPK_3364 dbd4d14c4f862596aa706247fcd02bea 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 12-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3364 dbd4d14c4f862596aa706247fcd02bea 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.1E-28 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3364 dbd4d14c4f862596aa706247fcd02bea 82 Pfam PF00886 Ribosomal protein S16 8 68 4.2E-24 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3364 dbd4d14c4f862596aa706247fcd02bea 82 SUPERFAMILY SSF54565 1 76 1.96E-28 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3364 dbd4d14c4f862596aa706247fcd02bea 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.752 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3364 dbd4d14c4f862596aa706247fcd02bea 82 Gene3D G3DSA:3.30.1320.10 1 81 1.7E-30 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 SUPERFAMILY SSF51735 26 269 2.55E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 176 195 5.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 5.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 162 5.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 Gene3D G3DSA:3.40.50.720 9 270 1.3E-84 T 12-10-2018 YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 4.9E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 164 4.9E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 195 4.9E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 232 252 4.9E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 214 4.9E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 101 112 4.9E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 36 269 1.1E-65 T 12-10-2018 YPK_2774 54453c5f6a14ae1964670108d516f9dd 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 163 191 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_3862 8bb3254ebf5327169ffb0fed9d98865b 828 SUPERFAMILY SSF69593 246 487 9.15E-25 T 12-10-2018 YPK_3862 8bb3254ebf5327169ffb0fed9d98865b 828 PIRSF PIRSF000437 19 812 0.0 T 12-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 YPK_3862 8bb3254ebf5327169ffb0fed9d98865b 828 Pfam PF01553 Acyltransferase 281 423 3.6E-26 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YPK_3862 8bb3254ebf5327169ffb0fed9d98865b 828 SMART SM00563 299 426 7.4E-28 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YPK_3862 8bb3254ebf5327169ffb0fed9d98865b 828 PIRSF PIRSF500064 2 815 0.0 T 12-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 YPK_3862 8bb3254ebf5327169ffb0fed9d98865b 828 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 798 0.0 T 12-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 YPK_3862 8bb3254ebf5327169ffb0fed9d98865b 828 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 806 32.578 T 12-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 YPK_2363 f364574c1df69f3dbbb2851a2d2594b8 199 SUPERFAMILY SSF52218 1 198 6.68E-61 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_2363 f364574c1df69f3dbbb2851a2d2594b8 199 Gene3D G3DSA:3.40.50.360 1 199 3.0E-77 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_2363 f364574c1df69f3dbbb2851a2d2594b8 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 199 45.913 T 12-10-2018 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 YPK_2363 f364574c1df69f3dbbb2851a2d2594b8 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 197 1.6E-98 T 12-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 YPK_2363 f364574c1df69f3dbbb2851a2d2594b8 199 Pfam PF03358 NADPH-dependent FMN reductase 13 142 2.5E-12 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 YPK_0762 5619830cc8133c3041bb414c1f9612e6 493 PIRSF PIRSF002746 46 493 1.4E-141 T 12-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YPK_0762 5619830cc8133c3041bb414c1f9612e6 493 Pfam PF02447 GntP family permease 50 491 7.3E-158 T 12-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YPK_0762 5619830cc8133c3041bb414c1f9612e6 493 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 51 493 8.7E-171 T 12-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YPK_2508 36dd236122be9428c17ec2583c0f7294 425 Pfam PF13378 Enolase C-terminal domain-like 201 414 2.6E-56 T 12-10-2018 IPR029065 Enolase C-terminal domain-like YPK_2508 36dd236122be9428c17ec2583c0f7294 425 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 244 275 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 YPK_2508 36dd236122be9428c17ec2583c0f7294 425 SUPERFAMILY SSF54826 4 138 4.77E-37 T 12-10-2018 YPK_2508 36dd236122be9428c17ec2583c0f7294 425 SUPERFAMILY SSF51604 183 423 2.49E-69 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_2508 36dd236122be9428c17ec2583c0f7294 425 Gene3D G3DSA:3.30.390.10 1 130 8.7E-58 T 12-10-2018 IPR029017 Enolase-like, N-terminal YPK_2508 36dd236122be9428c17ec2583c0f7294 425 Gene3D G3DSA:3.20.20.120 131 425 4.1E-110 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_2508 36dd236122be9428c17ec2583c0f7294 425 SMART SM00922 198 294 6.0E-22 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPK_2508 36dd236122be9428c17ec2583c0f7294 425 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 135 5.7E-5 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPK_0603 4b308344c0613b413ff714e6eb49d342 126 Pfam PF01042 Endoribonuclease L-PSP 7 124 1.7E-44 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YPK_0603 4b308344c0613b413ff714e6eb49d342 126 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 102 120 - T 12-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 YPK_0603 4b308344c0613b413ff714e6eb49d342 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 124 4.5E-50 T 12-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 YPK_0603 4b308344c0613b413ff714e6eb49d342 126 Gene3D G3DSA:3.30.1330.40 1 126 5.9E-50 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YPK_0603 4b308344c0613b413ff714e6eb49d342 126 SUPERFAMILY SSF55298 2 125 1.37E-44 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YPK_2891 dcebaef760128834fce33eba917c709c 334 Pfam PF00271 Helicase conserved C-terminal domain 118 222 2.0E-26 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2891 dcebaef760128834fce33eba917c709c 334 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 37 45 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPK_2891 dcebaef760128834fce33eba917c709c 334 Gene3D G3DSA:3.40.50.300 101 278 1.2E-49 T 12-10-2018 YPK_2891 dcebaef760128834fce33eba917c709c 334 SUPERFAMILY SSF52540 4 244 5.83E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2891 dcebaef760128834fce33eba917c709c 334 Gene3D G3DSA:3.40.50.300 2 100 1.7E-32 T 12-10-2018 YPK_2891 dcebaef760128834fce33eba917c709c 334 Pfam PF00270 DEAD/DEAH box helicase 6 78 3.2E-18 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_2891 dcebaef760128834fce33eba917c709c 334 SMART SM00490 142 223 2.3E-32 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_3289 3c0672d89d34f0e33c3b0e33497fb81c 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 3 128 32.466 T 12-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 YPK_3289 3c0672d89d34f0e33c3b0e33497fb81c 133 Pfam PF07417 Transcriptional regulator Crl 5 122 3.5E-54 T 12-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 YPK_3289 3c0672d89d34f0e33c3b0e33497fb81c 133 Gene3D G3DSA:3.30.310.230 1 133 3.6E-57 T 12-10-2018 IPR038208 Sigma factor-binding protein Crl superfamily GO:0045893 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 SUPERFAMILY SSF81665 413 911 1.7E-10 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 ProSitePatterns PS01047 Heavy-metal-associated domain. 75 104 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Pfam PF00122 E1-E2 ATPase 447 627 1.2E-50 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 SUPERFAMILY SSF56784 646 951 5.5E-61 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Gene3D G3DSA:3.40.1110.10 659 777 3.7E-92 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 360 954 4.0E-185 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 SUPERFAMILY SSF55008 226 294 5.76E-18 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 496 510 7.2E-25 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 770 781 7.2E-25 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 792 802 7.2E-25 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 845 864 7.2E-25 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 868 880 7.2E-25 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 648 662 7.2E-25 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Gene3D G3DSA:3.40.50.1000 629 897 3.7E-92 T 12-10-2018 IPR023214 HAD superfamily YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 418 922 6.0E-85 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 SUPERFAMILY SSF55008 2 67 8.77E-12 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 ProSitePatterns PS01047 Heavy-metal-associated domain. 232 261 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 SUPERFAMILY SSF81653 449 546 6.93E-25 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Gene3D G3DSA:3.30.70.100 70 131 4.4E-15 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Gene3D G3DSA:3.30.70.100 6 64 1.7E-11 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 SUPERFAMILY SSF55008 70 133 3.01E-13 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Pfam PF00403 Heavy-metal-associated domain 74 128 1.3E-9 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Pfam PF00403 Heavy-metal-associated domain 8 62 2.2E-8 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Pfam PF00403 Heavy-metal-associated domain 234 286 5.9E-12 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 650 656 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 379 954 2.5E-179 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Gene3D G3DSA:2.70.150.20 434 550 1.6E-33 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 845 861 6.6E-7 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 876 901 6.6E-7 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Gene3D G3DSA:3.30.70.100 228 291 4.4E-19 T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 ProSitePatterns PS01229 Hypothetical cof family signature 2. 845 867 - T 12-10-2018 YPK_3165 38d9b49f71dc2e4a12ea3b7f631d4e3c 961 Pfam PF00702 haloacid dehalogenase-like hydrolase 645 859 1.4E-46 T 12-10-2018 YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 21 143 4.8E-41 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 SUPERFAMILY SSF49584 137 237 8.11E-14 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 SUPERFAMILY SSF49354 17 143 2.12E-38 T 12-10-2018 IPR008962 PapD-like superfamily YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 170 236 1.8E-14 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 Gene3D G3DSA:2.60.40.10 22 144 1.8E-40 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 Gene3D G3DSA:2.60.40.10 148 245 1.2E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 97 114 - T 12-10-2018 IPR018046 Pili assembly chaperone, conserved site YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 21 30 3.7E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 70 91 3.7E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 98 115 3.7E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 164 179 3.7E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2276 aa58f5aaf1ab3a34daf99ed8b7c4350c 246 PRINTS PR00969 Pili chaperone signature 125 140 3.7E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 Pfam PF00072 Response regulator receiver domain 4 115 1.9E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 SMART SM00448 2 115 4.0E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 SUPERFAMILY SSF46894 130 206 4.08E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 SUPERFAMILY SSF52172 1 125 6.97E-28 T 12-10-2018 IPR011006 CheY-like superfamily YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 SMART SM00421 143 200 1.8E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 3.0E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 3.0E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 3.0E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 200 5.0E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2499 2170942f84359f8a1cae061c5e24ee8f 209 Gene3D G3DSA:3.40.50.12740 2 206 3.1E-55 T 12-10-2018 YPK_1200 754ae3e3a2d7b3fffaa825653d180800 103 SUPERFAMILY SSF47598 5 49 6.67E-11 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YPK_1200 754ae3e3a2d7b3fffaa825653d180800 103 Pfam PF03869 Arc-like DNA binding domain 2 46 3.0E-11 T 12-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 YPK_1200 754ae3e3a2d7b3fffaa825653d180800 103 Gene3D G3DSA:1.10.1220.10 1 51 6.4E-16 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 SMART SM00936 289 380 6.0E-34 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 128 145 4.4E-17 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 69 80 4.4E-17 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 155 168 4.4E-17 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 Gene3D G3DSA:2.60.410.10 289 380 9.8E-28 T 12-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 36 269 4.1E-99 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 289 380 8.2E-25 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 SUPERFAMILY SSF56601 10 289 5.64E-78 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 SUPERFAMILY SSF69189 289 382 2.94E-25 T 12-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3024 7d54c5b7bafb0ef0d6e4193314e98de8 400 Gene3D G3DSA:3.40.710.10 27 288 1.4E-89 T 12-10-2018 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 Gene3D G3DSA:3.20.20.70 275 590 3.5E-119 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 ProSitePatterns PS00512 Alpha-galactosidase signature. 323 338 - T 12-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 SUPERFAMILY SSF51445 289 621 1.45E-108 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PRINTS PR00743 Glycosyl hydrolase family 36 signature 294 308 3.8E-59 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PRINTS PR00743 Glycosyl hydrolase family 36 signature 430 445 3.8E-59 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PRINTS PR00743 Glycosyl hydrolase family 36 signature 257 277 3.8E-59 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PRINTS PR00743 Glycosyl hydrolase family 36 signature 478 494 3.8E-59 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PRINTS PR00743 Glycosyl hydrolase family 36 signature 503 519 3.8E-59 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PRINTS PR00743 Glycosyl hydrolase family 36 signature 206 221 3.8E-59 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PRINTS PR00743 Glycosyl hydrolase family 36 signature 372 394 3.8E-59 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PRINTS PR00743 Glycosyl hydrolase family 36 signature 322 337 3.8E-59 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 Gene3D G3DSA:2.70.98.60 2 274 7.1E-50 T 12-10-2018 IPR038417 Alpha-galactosidase, N-terminal domain superfamily KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 PIRSF PIRSF005536 1 707 4.1E-256 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 24 237 4.8E-44 T 12-10-2018 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_2493 16de7cf1588b7f14a44cd89d7ea2e2f6 708 Pfam PF02065 Melibiase 254 592 2.6E-122 T 12-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 YPK_3613 6d88eb40dfb0d667c9f7fff950a8d273 639 SUPERFAMILY SSF53955 473 635 1.97E-50 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_3613 6d88eb40dfb0d667c9f7fff950a8d273 639 Pfam PF01464 Transglycosylase SLT domain 480 590 1.2E-33 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 YPK_3613 6d88eb40dfb0d667c9f7fff950a8d273 639 Gene3D G3DSA:1.10.530.10 467 639 7.1E-53 T 12-10-2018 YPK_3613 6d88eb40dfb0d667c9f7fff950a8d273 639 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 495 523 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YPK_3613 6d88eb40dfb0d667c9f7fff950a8d273 639 Pfam PF14718 Soluble lytic murein transglycosylase L domain 400 466 1.4E-25 T 12-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 YPK_3613 6d88eb40dfb0d667c9f7fff950a8d273 639 SUPERFAMILY SSF48435 23 471 1.16E-139 T 12-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 YPK_3613 6d88eb40dfb0d667c9f7fff950a8d273 639 Gene3D G3DSA:1.10.1240.20 397 466 2.1E-28 T 12-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 YPK_3613 6d88eb40dfb0d667c9f7fff950a8d273 639 Gene3D G3DSA:1.25.20.10 23 383 3.0E-120 T 12-10-2018 YPK_4026 584f4d226926298f7ab58cac8ab66594 376 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 1 376 79.914 T 12-10-2018 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315 YPK_4026 584f4d226926298f7ab58cac8ab66594 376 Gene3D G3DSA:3.90.1150.10 250 376 2.7E-24 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_4026 584f4d226926298f7ab58cac8ab66594 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 371 1.4E-83 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_4026 584f4d226926298f7ab58cac8ab66594 376 SUPERFAMILY SSF53383 2 374 5.57E-101 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_4026 584f4d226926298f7ab58cac8ab66594 376 PIRSF PIRSF000390 1 376 7.8E-116 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase YPK_4026 584f4d226926298f7ab58cac8ab66594 376 Gene3D G3DSA:3.40.640.10 1 249 9.1E-84 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_4026 584f4d226926298f7ab58cac8ab66594 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 1.1E-210 T 12-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 YPK_2999 c2f79034be25c23f28bf58519b608bc2 408 Gene3D G3DSA:3.30.420.40 93 386 1.8E-89 T 12-10-2018 YPK_2999 c2f79034be25c23f28bf58519b608bc2 408 SUPERFAMILY SSF53067 88 394 3.99E-55 T 12-10-2018 YPK_2999 c2f79034be25c23f28bf58519b608bc2 408 Gene3D G3DSA:1.10.10.10 5 81 3.0E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2999 c2f79034be25c23f28bf58519b608bc2 408 Gene3D G3DSA:3.30.420.40 210 378 1.8E-89 T 12-10-2018 YPK_2999 c2f79034be25c23f28bf58519b608bc2 408 Pfam PF01047 MarR family 25 63 1.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_2999 c2f79034be25c23f28bf58519b608bc2 408 Pfam PF00480 ROK family 89 392 8.3E-89 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_2999 c2f79034be25c23f28bf58519b608bc2 408 SUPERFAMILY SSF46785 14 79 1.48E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2999 c2f79034be25c23f28bf58519b608bc2 408 ProSitePatterns PS01125 ROK family signature. 220 247 - T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 SUPERFAMILY SSF111369 65 124 7.45E-5 T 12-10-2018 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 406 421 2.9E-51 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 421 441 2.9E-51 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 35 58 2.9E-51 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 310 331 2.9E-51 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 77 97 2.9E-51 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 343 367 2.9E-51 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 Gene3D G3DSA:2.40.50.100 298 334 9.2E-19 T 12-10-2018 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 Gene3D G3DSA:2.40.50.100 65 98 6.0E-8 T 12-10-2018 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 ProSitePatterns PS00543 HlyD family secretion proteins signature. 406 428 - T 12-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 28 442 1.3E-109 T 12-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 Pfam PF13533 Biotin-lipoyl like 69 112 7.4E-8 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 Gene3D G3DSA:1.10.287.470 99 193 6.0E-8 T 12-10-2018 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 Gene3D G3DSA:1.10.287.470 217 297 9.2E-19 T 12-10-2018 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 Gene3D G3DSA:2.40.30.170 335 419 9.2E-19 T 12-10-2018 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 Gene3D G3DSA:2.40.30.170 54 64 6.0E-8 T 12-10-2018 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 SUPERFAMILY SSF111369 230 344 2.09E-6 T 12-10-2018 YPK_4083 dbf6921ddc832ff15e6d4dc0e887e763 442 Pfam PF13437 HlyD family secretion protein 298 409 9.9E-14 T 12-10-2018 YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 SMART SM00347 46 148 5.0E-31 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 2.6E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 2.6E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 2.6E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 2.6E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 Gene3D G3DSA:1.10.10.10 7 164 6.1E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 SUPERFAMILY SSF46785 21 165 2.12E-28 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3337 ff8e1f90ec3232ca99d633b736c3f540 170 Pfam PF01047 MarR family 53 112 5.6E-15 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 SUPERFAMILY SSF55031 212 322 2.72E-33 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 Pfam PF01546 Peptidase family M20/M25/M40 143 400 2.0E-10 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 TIGRFAM TIGR01882 peptidase-T: peptidase T 7 398 1.1E-101 T 12-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 SUPERFAMILY SSF53187 7 407 2.25E-72 T 12-10-2018 YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 Pfam PF07687 Peptidase dimerisation domain 209 309 1.8E-10 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 PIRSF PIRSF037215 4 410 6.1E-158 T 12-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 Gene3D G3DSA:3.30.70.360 212 322 5.6E-137 T 12-10-2018 YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 Gene3D G3DSA:3.40.630.10 9 401 5.6E-137 T 12-10-2018 YPK_0749 2c8cce8ac3bf825f64ad5d2750a2420f 410 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 142 179 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YPK_2748 df9fd97178e4b5a48798f566dcb36987 665 Gene3D G3DSA:2.40.170.20 173 665 3.4E-142 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_2748 df9fd97178e4b5a48798f566dcb36987 665 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 162 6.9E-27 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_2748 df9fd97178e4b5a48798f566dcb36987 665 Pfam PF00593 TonB dependent receptor 229 663 2.8E-58 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_2748 df9fd97178e4b5a48798f566dcb36987 665 Gene3D G3DSA:2.170.130.10 34 167 7.9E-40 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_2748 df9fd97178e4b5a48798f566dcb36987 665 SUPERFAMILY SSF56935 39 665 4.81E-126 T 12-10-2018 YPK_2748 df9fd97178e4b5a48798f566dcb36987 665 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 46 - T 12-10-2018 IPR010916 TonB box, conserved site YPK_3883 77a9afe418efb35ceecb3687b44115ef 162 SUPERFAMILY SSF46785 9 86 3.97E-8 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3883 77a9afe418efb35ceecb3687b44115ef 162 PIRSF PIRSF030837 1 161 2.6E-87 T 12-10-2018 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW YPK_2946 c7e9ec17e125181ae982404b54ffd15a 356 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 178 187 - T 12-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 YPK_2946 c7e9ec17e125181ae982404b54ffd15a 356 PIRSF PIRSF005096 12 354 5.0E-124 T 12-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 YPK_2946 c7e9ec17e125181ae982404b54ffd15a 356 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 20 351 3.1E-143 T 12-10-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 YPK_2946 c7e9ec17e125181ae982404b54ffd15a 356 Pfam PF01263 Aldose 1-epimerase 26 350 1.3E-91 T 12-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 YPK_2946 c7e9ec17e125181ae982404b54ffd15a 356 SUPERFAMILY SSF74650 16 351 6.28E-111 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YPK_2946 c7e9ec17e125181ae982404b54ffd15a 356 Gene3D G3DSA:2.70.98.10 16 353 1.1E-120 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 YPK_1912 9bd6cce06dffd57749c4b3074c7136f2 313 PIRSF PIRSF004976 2 270 6.4E-76 T 12-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 YPK_1912 9bd6cce06dffd57749c4b3074c7136f2 313 Pfam PF01171 PP-loop family 42 203 1.2E-12 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 YPK_1912 9bd6cce06dffd57749c4b3074c7136f2 313 SUPERFAMILY SSF52402 17 236 3.26E-54 T 12-10-2018 YPK_1912 9bd6cce06dffd57749c4b3074c7136f2 313 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 10 271 57.377 T 12-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 YPK_1912 9bd6cce06dffd57749c4b3074c7136f2 313 Gene3D G3DSA:3.40.50.620 3 267 2.1E-46 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1286 524e44f7508332079f6fde708d766b38 562 SUPERFAMILY SSF51126 5 257 4.08E-20 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_1286 524e44f7508332079f6fde708d766b38 562 PRINTS PR01484 Pertactin virulence factor family signature 450 473 4.5E-6 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1286 524e44f7508332079f6fde708d766b38 562 PRINTS PR01484 Pertactin virulence factor family signature 479 500 4.5E-6 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1286 524e44f7508332079f6fde708d766b38 562 PRINTS PR01484 Pertactin virulence factor family signature 301 321 4.5E-6 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1286 524e44f7508332079f6fde708d766b38 562 PRINTS PR01484 Pertactin virulence factor family signature 544 562 4.5E-6 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_1286 524e44f7508332079f6fde708d766b38 562 SUPERFAMILY SSF103515 272 562 3.92E-46 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_1286 524e44f7508332079f6fde708d766b38 562 SMART SM00869 301 551 1.7E-34 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_1286 524e44f7508332079f6fde708d766b38 562 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 166 562 7.3E-91 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_1286 524e44f7508332079f6fde708d766b38 562 Gene3D G3DSA:2.160.20.20 3 256 5.6E-27 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_1286 524e44f7508332079f6fde708d766b38 562 Pfam PF03797 Autotransporter beta-domain 305 538 1.9E-37 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_1286 524e44f7508332079f6fde708d766b38 562 Gene3D G3DSA:2.40.128.130 257 562 1.8E-55 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_1286 524e44f7508332079f6fde708d766b38 562 Pfam PF03212 Pertactin 152 252 3.6E-14 T 12-10-2018 IPR004899 Pertactin, central region YPK_2225 aa8a583110aa4ac884398006f15f486e 330 PIRSF PIRSF017020 1 327 7.5E-124 T 12-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 YPK_2225 aa8a583110aa4ac884398006f15f486e 330 SUPERFAMILY SSF53187 1 320 9.26E-87 T 12-10-2018 YPK_2225 aa8a583110aa4ac884398006f15f486e 330 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 320 4.0E-151 T 12-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 YPK_2225 aa8a583110aa4ac884398006f15f486e 330 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 44 322 4.8E-72 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 YPK_2225 aa8a583110aa4ac884398006f15f486e 330 Gene3D G3DSA:3.40.630.10 1 327 1.0E-110 T 12-10-2018 YPK_2225 aa8a583110aa4ac884398006f15f486e 330 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 330 146.602 T 12-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 SUPERFAMILY SSF55136 123 287 2.51E-58 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 Gene3D G3DSA:1.10.10.60 3 55 1.2E-26 T 12-10-2018 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 4.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 4.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 Pfam PF12833 Helix-turn-helix domain 27 105 1.6E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 Gene3D G3DSA:3.20.80.10 122 288 1.7E-49 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 Gene3D G3DSA:1.10.10.60 56 121 1.0E-20 T 12-10-2018 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 SMART SM00342 21 104 3.0E-31 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 SUPERFAMILY SSF46689 6 55 6.72E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 SUPERFAMILY SSF46689 57 106 6.27E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 Pfam PF06445 GyrI-like small molecule binding domain 127 287 7.6E-27 T 12-10-2018 IPR029442 GyrI-like small molecule binding domain YPK_3609 dc96b61bcc514b632a7bb84919d03c34 288 SMART SM00871 126 287 6.7E-20 T 12-10-2018 IPR010499 Bacterial transcription activator, effector binding YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 Gene3D G3DSA:1.20.5.710 3 51 2.9E-21 T 12-10-2018 YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 SUPERFAMILY SSF54736 51 122 1.12E-25 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 SUPERFAMILY SSF48300 4 58 3.66E-15 T 12-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 1.1E-31 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 Gene3D G3DSA:3.30.1390.10 52 122 4.1E-33 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 49 2.5E-14 T 12-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 6.3E-48 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 122 7.0E-29 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0338 1f7ea1d0229147fd6fa6ea2361fa0e17 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 122 25.251 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4221 56b533cc370c1e28d908debdcf79489b 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 12-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4221 56b533cc370c1e28d908debdcf79489b 79 Pfam PF00137 ATP synthase subunit C 11 69 1.5E-9 T 12-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 YPK_4221 56b533cc370c1e28d908debdcf79489b 79 Gene3D G3DSA:1.20.20.10 1 79 3.9E-34 T 12-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4221 56b533cc370c1e28d908debdcf79489b 79 SUPERFAMILY SSF81333 3 77 4.58E-18 T 12-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily YPK_4221 56b533cc370c1e28d908debdcf79489b 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 14.323 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4221 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 1.6E-8 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4221 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 1.6E-8 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4221 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 1.6E-8 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4221 56b533cc370c1e28d908debdcf79489b 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 1.9E-31 T 12-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 SMART SM01091 441 520 4.8E-26 T 12-10-2018 IPR005170 Transporter-associated domain YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 SUPERFAMILY SSF54631 292 426 5.43E-25 T 12-10-2018 YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Pfam PF00571 CBS domain 375 424 2.9E-6 T 12-10-2018 IPR000644 CBS domain YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Pfam PF00571 CBS domain 304 360 0.0012 T 12-10-2018 IPR000644 CBS domain YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Gene3D G3DSA:3.30.465.10 437 520 8.6E-20 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Pfam PF03741 Integral membrane protein TerC family 15 203 1.3E-49 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Pfam PF03471 Transporter associated domain 442 519 5.0E-18 T 12-10-2018 IPR005170 Transporter-associated domain YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 Gene3D G3DSA:3.10.580.10 285 436 5.4E-40 T 12-10-2018 YPK_2549 bd82aa2cfc32bdabdcfa4e8ecfee7f29 528 SUPERFAMILY SSF56176 439 521 6.82E-21 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 TIGRFAM TIGR00595 priA: primosomal protein N' 221 730 2.7E-205 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 SUPERFAMILY SSF52540 220 601 3.67E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 Pfam PF00271 Helicase conserved C-terminal domain 522 589 1.8E-5 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 SMART SM00487 195 395 5.0E-17 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 Gene3D G3DSA:1.10.8.630 2 113 4.3E-36 T 12-10-2018 YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 732 25.589 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 SMART SM00490 492 589 9.2E-8 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 Gene3D G3DSA:3.40.50.300 184 379 1.7E-82 T 12-10-2018 YPK_4099 1b196b44bcdf20100f2c8bf5bae98e5a 732 Pfam PF00270 DEAD/DEAH box helicase 219 364 9.6E-14 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 Gene3D G3DSA:3.30.70.1450 408 484 3.1E-12 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 Pfam PF02080 TrkA-C domain 425 483 5.9E-13 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 Gene3D G3DSA:1.20.1530.20 7 391 1.1E-17 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 Gene3D G3DSA:3.30.465.10 486 570 2.4E-11 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 575 49.934 T 12-10-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 SMART SM01091 492 572 1.2E-20 T 12-10-2018 IPR005170 Transporter-associated domain YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 Pfam PF00999 Sodium/hydrogen exchanger family 15 387 6.1E-59 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 SUPERFAMILY SSF116726 420 483 1.14E-11 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 Pfam PF03471 Transporter associated domain 493 571 2.8E-14 T 12-10-2018 IPR005170 Transporter-associated domain YPK_1658 3b4ad80866e2c21fd2d99ec27131c3e8 575 SUPERFAMILY SSF56176 497 570 6.82E-13 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 SUPERFAMILY SSF82693 564 666 3.92E-27 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Gene3D G3DSA:3.30.2090.10 179 276 1.9E-275 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Gene3D G3DSA:3.30.2090.10 716 804 1.9E-275 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.0E-86 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 SUPERFAMILY SSF82866 826 964 3.14E-28 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Gene3D G3DSA:1.20.1640.10 8 511 1.9E-275 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 952 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Gene3D G3DSA:3.30.70.1320 133 333 1.9E-275 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 SUPERFAMILY SSF82714 717 803 1.57E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Gene3D G3DSA:3.30.70.1440 664 861 1.9E-275 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 SUPERFAMILY SSF82693 38 131 1.83E-26 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 SUPERFAMILY SSF82714 183 273 4.05E-22 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Gene3D G3DSA:1.20.1640.10 512 955 1.9E-275 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 SUPERFAMILY SSF82866 297 499 4.84E-45 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Gene3D G3DSA:3.30.70.1430 38 812 1.9E-275 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Pfam PF00873 AcrB/AcrD/AcrF family 1 952 1.1E-285 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 SUPERFAMILY SSF82693 136 331 8.2E-23 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 Gene3D G3DSA:3.30.70.1430 566 663 1.9E-275 T 12-10-2018 YPK_0739 ddfa4170cc093d4050a3db0dcd6c3d74 966 SUPERFAMILY SSF82693 667 852 3.92E-25 T 12-10-2018 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 9.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 9.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 9.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 9.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SUPERFAMILY SSF47226 764 931 9.03E-21 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 176 1.6E-56 T 12-10-2018 IPR019247 Histidine kinase BarA, N-terminal YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SMART SM00304 199 251 5.5E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SUPERFAMILY SSF55874 345 517 1.96E-42 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SUPERFAMILY SSF47384 277 357 3.14E-21 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 355 1.4E-18 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SMART SM00387 403 519 1.9E-32 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Pfam PF00072 Response regulator receiver domain 670 781 8.0E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Gene3D G3DSA:1.10.287.130 255 354 2.5E-28 T 12-10-2018 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SMART SM00388 291 356 2.3E-21 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Gene3D G3DSA:1.20.1480.50 165 254 1.3E-8 T 12-10-2018 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SMART SM00073 840 936 7.9E-4 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SUPERFAMILY SSF52172 534 647 3.22E-5 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Pfam PF01627 Hpt domain 850 931 7.8E-11 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Gene3D G3DSA:3.30.565.10 357 523 7.7E-46 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SUPERFAMILY SSF158472 199 248 2.09E-5 T 12-10-2018 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SMART SM00448 668 781 4.1E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Gene3D G3DSA:1.20.120.160 829 940 5.1E-27 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Gene3D G3DSA:3.40.50.2300 650 789 1.9E-33 T 12-10-2018 YPK_3451 c72377e960af51658ae70f48dfb11adf 942 SUPERFAMILY SSF52172 668 786 1.57E-31 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3451 c72377e960af51658ae70f48dfb11adf 942 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 403 518 2.2E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 SUPERFAMILY SSF53067 153 340 4.08E-50 T 12-10-2018 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 Pfam PF06723 MreB/Mbl protein 11 338 9.8E-150 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 12-10-2018 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.30.420.40 158 321 6.2E-130 T 12-10-2018 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.1E-170 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.30.420.40 14 331 6.2E-130 T 12-10-2018 YPK_0465 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.90.640.10 190 263 6.2E-130 T 12-10-2018 YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 Gene3D G3DSA:1.10.10.10 7 94 1.7E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 SUPERFAMILY SSF53850 93 296 2.33E-40 T 12-10-2018 YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 Pfam PF03466 LysR substrate binding domain 91 292 1.1E-39 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 SUPERFAMILY SSF46785 3 87 3.59E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 Gene3D G3DSA:3.40.190.10 163 262 3.4E-60 T 12-10-2018 YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.6E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.0E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1052 1c3afa085b9c4af09502a412da9e8580 305 Gene3D G3DSA:3.40.190.10 103 288 3.4E-60 T 12-10-2018 YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 SUPERFAMILY SSF56235 2 233 7.98E-75 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 40.997 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 SUPERFAMILY SSF53697 245 609 9.39E-113 T 12-10-2018 YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 Pfam PF13522 Glutamine amidotransferase domain 65 184 3.7E-21 T 12-10-2018 YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 Pfam PF01380 SIS domain 289 417 1.9E-33 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 Pfam PF01380 SIS domain 462 591 1.6E-28 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 Gene3D G3DSA:3.40.50.10490 447 594 1.9E-153 T 12-10-2018 YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 Gene3D G3DSA:3.60.20.10 2 241 2.9E-82 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 Gene3D G3DSA:3.40.50.10490 249 608 1.9E-153 T 12-10-2018 YPK_4229 ec118a2f9e3574a13bbab437992e5549 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 1.6E-263 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 YPK_3875 f9ca76374e7fdf73b4196af1f549148e 151 Gene3D G3DSA:1.10.3680.10 1 151 7.7E-43 T 12-10-2018 IPR029024 TerB-like YPK_3875 f9ca76374e7fdf73b4196af1f549148e 151 SUPERFAMILY SSF158682 23 150 8.5E-17 T 12-10-2018 IPR029024 TerB-like YPK_3875 f9ca76374e7fdf73b4196af1f549148e 151 Pfam PF05099 Tellurite resistance protein TerB 15 150 3.5E-24 T 12-10-2018 IPR007791 Co-chaperone DjlA, N-terminal YPK_2733 b36cbd6ee036dff2759a3de2cd9d447d 87 PRINTS PR00160 Glutaredoxin signature 66 79 4.5E-12 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_2733 b36cbd6ee036dff2759a3de2cd9d447d 87 PRINTS PR00160 Glutaredoxin signature 52 65 4.5E-12 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_2733 b36cbd6ee036dff2759a3de2cd9d447d 87 PRINTS PR00160 Glutaredoxin signature 3 21 4.5E-12 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_2733 b36cbd6ee036dff2759a3de2cd9d447d 87 Pfam PF00462 Glutaredoxin 4 69 1.6E-16 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YPK_2733 b36cbd6ee036dff2759a3de2cd9d447d 87 SUPERFAMILY SSF52833 4 81 6.26E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_2733 b36cbd6ee036dff2759a3de2cd9d447d 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 85 5.1E-50 T 12-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 YPK_2733 b36cbd6ee036dff2759a3de2cd9d447d 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 12-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 YPK_2733 b36cbd6ee036dff2759a3de2cd9d447d 87 Gene3D G3DSA:3.40.30.10 3 85 4.4E-25 T 12-10-2018 YPK_2259 dd71786a9ae054a0a9242a9b994305e5 314 SUPERFAMILY SSF53850 86 287 1.72E-30 T 12-10-2018 YPK_2259 dd71786a9ae054a0a9242a9b994305e5 314 Gene3D G3DSA:3.40.190.10 95 276 1.1E-19 T 12-10-2018 YPK_2259 dd71786a9ae054a0a9242a9b994305e5 314 Pfam PF03466 LysR substrate binding domain 86 283 1.1E-40 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2259 dd71786a9ae054a0a9242a9b994305e5 314 SUPERFAMILY SSF46785 1 83 3.63E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2259 dd71786a9ae054a0a9242a9b994305e5 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.8E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2259 dd71786a9ae054a0a9242a9b994305e5 314 Gene3D G3DSA:1.10.10.10 1 84 9.6E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2259 dd71786a9ae054a0a9242a9b994305e5 314 Gene3D G3DSA:3.40.190.10 163 265 1.1E-19 T 12-10-2018 YPK_1461 4b8c5975f56c0da1c5f63e817b5b91f8 349 SUPERFAMILY SSF50331 248 340 8.5E-7 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1461 4b8c5975f56c0da1c5f63e817b5b91f8 349 SUPERFAMILY SSF52540 4 242 3.66E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1461 4b8c5975f56c0da1c5f63e817b5b91f8 349 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1461 4b8c5975f56c0da1c5f63e817b5b91f8 349 Gene3D G3DSA:3.40.50.300 2 273 3.8E-68 T 12-10-2018 YPK_1461 4b8c5975f56c0da1c5f63e817b5b91f8 349 Pfam PF00005 ABC transporter 19 163 3.0E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1461 4b8c5975f56c0da1c5f63e817b5b91f8 349 SMART SM00382 28 213 2.4E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2251 83ae588b10f82e5521806fef31f7d46f 175 PIRSF PIRSF017018 1 175 1.4E-73 T 12-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type YPK_2251 83ae588b10f82e5521806fef31f7d46f 175 Gene3D G3DSA:2.60.40.2480 23 175 1.3E-77 T 12-10-2018 IPR038482 Periplasmic metal-binding protein tp34-type superfamily YPK_2251 83ae588b10f82e5521806fef31f7d46f 175 Pfam PF10634 Fe2+ transport protein 25 173 4.2E-70 T 12-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 62.818 T 12-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 9.4E-236 T 12-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 SUPERFAMILY SSF63380 105 272 4.86E-35 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 Gene3D G3DSA:2.40.30.10 126 264 1.4E-48 T 12-10-2018 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 Pfam PF00970 Oxidoreductase FAD-binding domain 202 266 1.6E-8 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 PIRSF PIRSF000044 1 407 8.7E-218 T 12-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 Gene3D G3DSA:3.10.20.30 34 125 2.9E-30 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 Gene3D G3DSA:3.40.50.80 275 393 1.4E-34 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 5.0E-19 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 242 251 1.2E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 373 381 1.2E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 209 216 1.2E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 276 295 1.2E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 314 325 1.2E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 SUPERFAMILY SSF54292 35 124 1.06E-22 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 41 114 1.9E-10 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YPK_3300 5f76db85061ae0ec18f77df5f6185b7d 407 SUPERFAMILY SSF52343 255 402 1.96E-38 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_1367 e0b70fbbe533d889cbf2d152e56dff6f 150 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 21 132 1.0E-39 T 12-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPK_1367 e0b70fbbe533d889cbf2d152e56dff6f 150 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 5 150 18.832 T 12-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPK_1367 e0b70fbbe533d889cbf2d152e56dff6f 150 Pfam PF04284 Protein of unknown function (DUF441) 9 147 2.1E-47 T 12-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame YPK_2517 167d0743157f3506ed9fb43ac4f592b9 463 Gene3D G3DSA:1.20.1740.10 21 456 1.1E-63 T 12-10-2018 YPK_2517 167d0743157f3506ed9fb43ac4f592b9 463 Pfam PF13520 Amino acid permease 53 417 3.1E-32 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2517 167d0743157f3506ed9fb43ac4f592b9 463 PIRSF PIRSF006060 6 457 3.6E-71 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2955 9d8178f473e966de54b66cded8e89374 168 SUPERFAMILY SSF103088 56 167 5.1E-34 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_2955 9d8178f473e966de54b66cded8e89374 168 Pfam PF00691 OmpA family 67 162 7.7E-21 T 12-10-2018 IPR006665 OmpA-like domain YPK_2955 9d8178f473e966de54b66cded8e89374 168 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 168 31.689 T 12-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 YPK_2955 9d8178f473e966de54b66cded8e89374 168 ProSitePatterns PS01068 OmpA-like domain. 100 144 - T 12-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 YPK_2955 9d8178f473e966de54b66cded8e89374 168 Gene3D G3DSA:3.30.1330.60 39 168 1.3E-47 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_2955 9d8178f473e966de54b66cded8e89374 168 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 66 168 7.8E-46 T 12-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 YPK_2955 9d8178f473e966de54b66cded8e89374 168 PRINTS PR01021 OMPA domain signature 113 129 4.1E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_2955 9d8178f473e966de54b66cded8e89374 168 PRINTS PR01021 OMPA domain signature 68 90 4.1E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_2955 9d8178f473e966de54b66cded8e89374 168 PRINTS PR01021 OMPA domain signature 98 113 4.1E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Gene3D G3DSA:3.30.450.20 141 266 9.0E-27 T 12-10-2018 YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Gene3D G3DSA:3.30.450.20 267 394 6.4E-24 T 12-10-2018 YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Pfam PF13426 PAS domain 151 254 1.6E-13 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Pfam PF13426 PAS domain 279 382 2.3E-9 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Pfam PF13426 PAS domain 24 126 2.8E-11 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Pfam PF00990 Diguanylate cyclase, GGDEF domain 532 688 5.3E-44 T 12-10-2018 IPR000160 GGDEF domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Pfam PF00989 PAS fold 403 518 6.8E-14 T 12-10-2018 IPR013767 PAS fold GO:0006355 YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Gene3D G3DSA:3.30.70.270 521 693 2.7E-52 T 12-10-2018 YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Gene3D G3DSA:3.30.450.20 395 519 1.1E-22 T 12-10-2018 YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 Gene3D G3DSA:3.30.450.20 8 140 3.1E-24 T 12-10-2018 YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SUPERFAMILY SSF55785 24 136 1.77E-19 T 12-10-2018 IPR035965 PAS domain superfamily YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 528 691 2.9E-42 T 12-10-2018 IPR000160 GGDEF domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00086 86 127 5.4 T 12-10-2018 IPR001610 PAC motif YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00086 341 383 0.021 T 12-10-2018 IPR001610 PAC motif YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00086 479 521 54.0 T 12-10-2018 IPR001610 PAC motif YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00086 213 255 0.33 T 12-10-2018 IPR001610 PAC motif YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SUPERFAMILY SSF55073 537 690 2.28E-44 T 12-10-2018 IPR029787 Nucleotide cyclase YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SUPERFAMILY SSF55785 251 377 1.92E-25 T 12-10-2018 IPR035965 PAS domain superfamily YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SUPERFAMILY SSF55785 380 519 2.79E-20 T 12-10-2018 IPR035965 PAS domain superfamily YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SUPERFAMILY SSF55785 123 250 1.74E-24 T 12-10-2018 IPR035965 PAS domain superfamily YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00267 521 692 8.8E-54 T 12-10-2018 IPR000160 GGDEF domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00091 139 208 6.4E-4 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00091 11 80 5.7E-5 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00091 402 468 1.3E-8 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 SMART SM00091 267 335 1.2 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 399 528 5.0E-15 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 265 390 2.9E-16 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 262 8.2E-21 T 12-10-2018 IPR000014 PAS domain YPK_2470 191a58d521396b6d50cc8699ea0964ec 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 133 5.7E-17 T 12-10-2018 IPR000014 PAS domain YPK_2644 a7c1b6562f4a670e133f80821d34483d 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 YPK_2644 a7c1b6562f4a670e133f80821d34483d 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 5.5E-159 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 YPK_2644 a7c1b6562f4a670e133f80821d34483d 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 YPK_2644 a7c1b6562f4a670e133f80821d34483d 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 4.7E-92 T 12-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 YPK_2644 a7c1b6562f4a670e133f80821d34483d 336 SUPERFAMILY SSF51395 1 334 3.19E-106 T 12-10-2018 YPK_2644 a7c1b6562f4a670e133f80821d34483d 336 Gene3D G3DSA:3.20.20.70 1 336 8.7E-146 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2644 a7c1b6562f4a670e133f80821d34483d 336 PIRSF PIRSF000164 13 336 4.9E-96 T 12-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 YPK_2644 a7c1b6562f4a670e133f80821d34483d 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.453 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 YPK_0571 8a273e12dc125e9b88e66301429c0c65 562 Gene3D G3DSA:2.40.160.50 186 561 4.5E-100 T 12-10-2018 YPK_0571 8a273e12dc125e9b88e66301429c0c65 562 Pfam PF08479 POTRA domain, ShlB-type 77 153 3.8E-24 T 12-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_0571 8a273e12dc125e9b88e66301429c0c65 562 PIRSF PIRSF029745 10 562 2.1E-157 T 12-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 YPK_0571 8a273e12dc125e9b88e66301429c0c65 562 Gene3D G3DSA:3.10.20.310 71 153 5.3E-8 T 12-10-2018 YPK_0571 8a273e12dc125e9b88e66301429c0c65 562 Pfam PF17287 POTRA domain 154 208 1.5E-19 T 12-10-2018 IPR035251 ShlB, POTRA domain YPK_0571 8a273e12dc125e9b88e66301429c0c65 562 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 213 526 1.1E-108 T 12-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YPK_3879 52b6077f1f783c4da845fee0afdcd006 378 Gene3D G3DSA:3.40.50.2020 26 218 5.4E-10 T 12-10-2018 YPK_3879 52b6077f1f783c4da845fee0afdcd006 378 Pfam PF15609 Phosphoribosyl transferase 32 218 7.8E-62 T 12-10-2018 YPK_3879 52b6077f1f783c4da845fee0afdcd006 378 PIRSF PIRSF020967 1 378 1.4E-221 T 12-10-2018 IPR011214 Uncharacterised conserved protein UCP020967 YPK_3879 52b6077f1f783c4da845fee0afdcd006 378 Pfam PF12500 TRSP domain C terminus to PRTase_2 265 356 1.2E-20 T 12-10-2018 IPR022537 TRSP domain YPK_3879 52b6077f1f783c4da845fee0afdcd006 378 SUPERFAMILY SSF53271 27 220 3.15E-19 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_3457 05ca593d44188ecfc850e31a12e1ca05 114 Gene3D G3DSA:2.60.300.12 9 114 4.3E-34 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YPK_3457 05ca593d44188ecfc850e31a12e1ca05 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 9 109 1.5E-20 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 YPK_3457 05ca593d44188ecfc850e31a12e1ca05 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 5.5E-39 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 YPK_3457 05ca593d44188ecfc850e31a12e1ca05 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 95 112 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 YPK_3457 05ca593d44188ecfc850e31a12e1ca05 114 SUPERFAMILY SSF89360 8 103 7.06E-31 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YPK_3457 05ca593d44188ecfc850e31a12e1ca05 114 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 114 36.686 T 12-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 YPK_0062 54dc35ef92319378433dc5ebc3eb9bf2 422 Gene3D G3DSA:3.40.50.150 42 294 4.8E-19 T 12-10-2018 YPK_0062 54dc35ef92319378433dc5ebc3eb9bf2 422 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 53 69 5.2E-6 T 12-10-2018 YPK_0062 54dc35ef92319378433dc5ebc3eb9bf2 422 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 79 93 5.2E-6 T 12-10-2018 YPK_0062 54dc35ef92319378433dc5ebc3eb9bf2 422 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 172 184 5.2E-6 T 12-10-2018 YPK_0062 54dc35ef92319378433dc5ebc3eb9bf2 422 SUPERFAMILY SSF53335 8 242 3.16E-20 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3856 86b998a1f134a27d909cfa458645badb 327 Gene3D G3DSA:3.90.180.10 11 321 4.1E-119 T 12-10-2018 YPK_3856 86b998a1f134a27d909cfa458645badb 327 Pfam PF00107 Zinc-binding dehydrogenase 152 257 1.4E-28 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YPK_3856 86b998a1f134a27d909cfa458645badb 327 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 12-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 YPK_3856 86b998a1f134a27d909cfa458645badb 327 SUPERFAMILY SSF51735 113 274 1.41E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3856 86b998a1f134a27d909cfa458645badb 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 88 2.5E-10 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YPK_3856 86b998a1f134a27d909cfa458645badb 327 SUPERFAMILY SSF50129 2 145 7.55E-36 T 12-10-2018 IPR011032 GroES-like superfamily YPK_3856 86b998a1f134a27d909cfa458645badb 327 Gene3D G3DSA:3.40.50.720 124 269 4.1E-119 T 12-10-2018 YPK_3856 86b998a1f134a27d909cfa458645badb 327 SMART SM00829 11 325 4.1E-29 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 SUPERFAMILY SSF46955 2 121 4.76E-35 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 SMART SM00422 2 71 1.9E-31 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 Gene3D G3DSA:1.10.1660.10 1 129 2.0E-37 T 12-10-2018 YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 3.4E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 3.4E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 3.4E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 2.6E-72 T 12-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 YPK_0310 5e8c0bd933511bfb8ecdf616f430e417 141 Pfam PF13411 MerR HTH family regulatory protein 3 69 3.4E-21 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_3635 b5dc96898767d79f547c633aae137f81 145 SUPERFAMILY SSF102220 27 135 1.23E-36 T 12-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3635 b5dc96898767d79f547c633aae137f81 145 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 34 125 2.0E-47 T 12-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3635 b5dc96898767d79f547c633aae137f81 145 Pfam PF03603 DNA polymerase III psi subunit 3 127 2.2E-48 T 12-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3635 b5dc96898767d79f547c633aae137f81 145 Gene3D G3DSA:3.40.50.10220 33 137 6.2E-38 T 12-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3635 b5dc96898767d79f547c633aae137f81 145 PIRSF PIRSF029225 2 131 4.0E-55 T 12-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_0085 f9f8f6b55a39653154876cb54ba6a44a 463 Gene3D G3DSA:2.160.20.10 66 351 2.8E-65 T 12-10-2018 IPR012334 Pectin lyase fold YPK_0085 f9f8f6b55a39653154876cb54ba6a44a 463 SUPERFAMILY SSF51126 70 346 5.65E-45 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_0085 f9f8f6b55a39653154876cb54ba6a44a 463 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 397 422 2.3 T 12-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPK_0085 f9f8f6b55a39653154876cb54ba6a44a 463 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 300 340 1.4E-5 T 12-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat YPK_0085 f9f8f6b55a39653154876cb54ba6a44a 463 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 85 180 2.8E-18 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_0085 f9f8f6b55a39653154876cb54ba6a44a 463 Pfam PF05860 haemagglutination activity domain 70 183 9.1E-24 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_0085 f9f8f6b55a39653154876cb54ba6a44a 463 SMART SM00912 67 184 5.8E-34 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_1131 a3146419f9bca7692336c5cdbe6c0346 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-46 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1131 a3146419f9bca7692336c5cdbe6c0346 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 2.9E-43 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1131 a3146419f9bca7692336c5cdbe6c0346 100 SUPERFAMILY SSF54111 1 99 7.19E-41 T 12-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1131 a3146419f9bca7692336c5cdbe6c0346 100 Gene3D G3DSA:3.30.280.10 1 100 3.8E-43 T 12-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1131 a3146419f9bca7692336c5cdbe6c0346 100 Pfam PF00547 Urease, gamma subunit 1 99 2.6E-42 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1131 a3146419f9bca7692336c5cdbe6c0346 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 32.942 T 12-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1131 a3146419f9bca7692336c5cdbe6c0346 100 PIRSF PIRSF001223 1 100 3.9E-48 T 12-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1804 6469be24751b8a99d48d55b03ec35188 278 PIRSF PIRSF006625 1 278 1.7E-136 T 12-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YPK_1804 6469be24751b8a99d48d55b03ec35188 278 Pfam PF04962 KduI/IolB family 69 272 1.1E-32 T 12-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YPK_1804 6469be24751b8a99d48d55b03ec35188 278 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 278 56.399 T 12-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YPK_1804 6469be24751b8a99d48d55b03ec35188 278 Gene3D G3DSA:2.60.120.10 10 264 5.9E-122 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1804 6469be24751b8a99d48d55b03ec35188 278 Gene3D G3DSA:2.60.120.520 30 144 5.9E-122 T 12-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YPK_1804 6469be24751b8a99d48d55b03ec35188 278 SUPERFAMILY SSF51182 1 262 6.77E-108 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_4151 c4417662664b844543cf3e688cc80122 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 4.0E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YPK_4151 c4417662664b844543cf3e688cc80122 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 4.0E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YPK_4151 c4417662664b844543cf3e688cc80122 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 4.0E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YPK_4151 c4417662664b844543cf3e688cc80122 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 4.0E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YPK_4151 c4417662664b844543cf3e688cc80122 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 4.0E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YPK_4151 c4417662664b844543cf3e688cc80122 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 60 1.2E-15 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YPK_4151 c4417662664b844543cf3e688cc80122 159 Pfam PF01467 Cytidylyltransferase-like 6 134 6.1E-23 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YPK_4151 c4417662664b844543cf3e688cc80122 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 35.549 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YPK_4151 c4417662664b844543cf3e688cc80122 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 2.1E-58 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 YPK_4151 c4417662664b844543cf3e688cc80122 159 SUPERFAMILY SSF52374 3 156 5.36E-44 T 12-10-2018 YPK_4151 c4417662664b844543cf3e688cc80122 159 Gene3D G3DSA:3.40.50.620 1 159 2.8E-56 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2422 757f3b695096d6a4565490e30b65c023 428 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 410 1.3E-97 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPK_2422 757f3b695096d6a4565490e30b65c023 428 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YPK_2422 757f3b695096d6a4565490e30b65c023 428 Gene3D G3DSA:2.60.98.20 146 310 2.6E-34 T 12-10-2018 IPR037058 Flagellar hook protein FlgE superfamily YPK_2422 757f3b695096d6a4565490e30b65c023 428 Pfam PF00460 Flagella basal body rod protein 4 33 4.0E-11 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_2422 757f3b695096d6a4565490e30b65c023 428 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 350 427 1.1E-22 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_2422 757f3b695096d6a4565490e30b65c023 428 SUPERFAMILY SSF117143 73 389 1.96E-77 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPK_2422 757f3b695096d6a4565490e30b65c023 428 Pfam PF07559 Flagellar basal body protein FlaE 174 309 4.3E-18 T 12-10-2018 IPR011491 Flagellar hook protein FlgE YPK_1869 008863ee7a296a03607b11eae0e4b2ac 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 134 2.8E-67 T 12-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 YPK_1869 008863ee7a296a03607b11eae0e4b2ac 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 1.7E-26 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPK_1869 008863ee7a296a03607b11eae0e4b2ac 135 Gene3D G3DSA:3.10.180.10 1 131 4.3E-49 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_1869 008863ee7a296a03607b11eae0e4b2ac 135 SUPERFAMILY SSF54593 1 128 3.22E-35 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_1869 008863ee7a296a03607b11eae0e4b2ac 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 12-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 YPK_3448 28166a4f05e5857a7d15380c3dd8b4ac 280 Gene3D G3DSA:1.10.287.1080 12 142 4.2E-45 T 12-10-2018 YPK_3448 28166a4f05e5857a7d15380c3dd8b4ac 280 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 38 111 2.8E-28 T 12-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YPK_3448 28166a4f05e5857a7d15380c3dd8b4ac 280 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 185 246 9.6E-7 T 12-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core YPK_3448 28166a4f05e5857a7d15380c3dd8b4ac 280 Gene3D G3DSA:1.10.287.1080 146 279 3.3E-47 T 12-10-2018 YPK_3448 28166a4f05e5857a7d15380c3dd8b4ac 280 TIGRFAM TIGR00444 mazG: MazG family protein 21 274 1.7E-106 T 12-10-2018 IPR011551 NTP pyrophosphohydrolase MazG YPK_3448 28166a4f05e5857a7d15380c3dd8b4ac 280 SUPERFAMILY SSF101386 153 253 7.29E-23 T 12-10-2018 YPK_3448 28166a4f05e5857a7d15380c3dd8b4ac 280 SUPERFAMILY SSF101386 14 114 5.23E-25 T 12-10-2018 YPK_1194 62905578adcc40e04ea8334d55882017 61 SUPERFAMILY SSF54862 3 44 3.6E-8 T 12-10-2018 YPK_1194 62905578adcc40e04ea8334d55882017 61 Gene3D G3DSA:3.30.70.20 1 61 5.9E-21 T 12-10-2018 YPK_1793 101e25b2ae6abc1602de23a4f17b2def 263 Pfam PF01614 Bacterial transcriptional regulator 129 254 1.2E-40 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal YPK_1793 101e25b2ae6abc1602de23a4f17b2def 263 Pfam PF09339 IclR helix-turn-helix domain 15 65 4.5E-14 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 YPK_1793 101e25b2ae6abc1602de23a4f17b2def 263 SUPERFAMILY SSF46785 13 86 8.84E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1793 101e25b2ae6abc1602de23a4f17b2def 263 SMART SM00346 13 102 1.4E-36 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 YPK_1793 101e25b2ae6abc1602de23a4f17b2def 263 SUPERFAMILY SSF55781 77 259 4.58E-52 T 12-10-2018 YPK_1793 101e25b2ae6abc1602de23a4f17b2def 263 Gene3D G3DSA:3.30.450.40 85 263 6.1E-65 T 12-10-2018 IPR029016 GAF-like domain superfamily YPK_1793 101e25b2ae6abc1602de23a4f17b2def 263 Gene3D G3DSA:1.10.10.10 6 82 2.3E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2354 0ba10e4106836df4e96c866b4617c37b 182 PIRSF PIRSF000847 1 180 1.2E-43 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YPK_2354 0ba10e4106836df4e96c866b4617c37b 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 3.4E-17 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 YPK_2354 0ba10e4106836df4e96c866b4617c37b 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 YPK_2354 0ba10e4106836df4e96c866b4617c37b 182 Hamap MF_01437 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [pgsA]. 1 182 32.649 T 12-10-2018 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YPK_2354 0ba10e4106836df4e96c866b4617c37b 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 180 5.9E-60 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YPK_2354 0ba10e4106836df4e96c866b4617c37b 182 Gene3D G3DSA:1.20.120.1760 4 176 1.1E-13 T 12-10-2018 YPK_1480 1bebe059c5fc59a23d59b04e6584b110 500 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 494 9.3E-218 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_1480 1bebe059c5fc59a23d59b04e6584b110 500 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 494 8.1E-191 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_1276 47eef6a78366efcbd5162fa17098164a 409 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 6 409 7.2E-230 T 12-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 YPK_1276 47eef6a78366efcbd5162fa17098164a 409 Gene3D G3DSA:3.40.640.10 21 267 7.3E-167 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1276 47eef6a78366efcbd5162fa17098164a 409 SUPERFAMILY SSF53383 8 395 1.71E-114 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1276 47eef6a78366efcbd5162fa17098164a 409 Gene3D G3DSA:3.90.1150.10 10 381 7.3E-167 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1276 47eef6a78366efcbd5162fa17098164a 409 Pfam PF00266 Aminotransferase class-V 10 373 4.7E-88 T 12-10-2018 IPR000192 Aminotransferase class V domain YPK_1276 47eef6a78366efcbd5162fa17098164a 409 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 202 221 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPK_1276 47eef6a78366efcbd5162fa17098164a 409 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 6 400 54.482 T 12-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 YPK_1276 47eef6a78366efcbd5162fa17098164a 409 PIRSF PIRSF005572 7 389 5.9E-137 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YPK_0513 d880a82fb032e010a0422f32487d98c3 260 Pfam PF02405 Permease MlaE 45 256 5.2E-76 T 12-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 YPK_0513 d880a82fb032e010a0422f32487d98c3 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 2.2E-104 T 12-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria YPK_1680 3d5406cfafd0a67130f971b32383c281 198 PIRSF PIRSF006305 1 193 5.0E-37 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 YPK_1680 3d5406cfafd0a67130f971b32383c281 198 Pfam PF02545 Maf-like protein 3 185 1.4E-41 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 YPK_1680 3d5406cfafd0a67130f971b32383c281 198 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 2.3E-54 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 YPK_1680 3d5406cfafd0a67130f971b32383c281 198 Gene3D G3DSA:3.90.950.10 2 194 1.2E-57 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_1680 3d5406cfafd0a67130f971b32383c281 198 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 28.074 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 YPK_1680 3d5406cfafd0a67130f971b32383c281 198 SUPERFAMILY SSF52972 1 186 4.71E-56 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 SUPERFAMILY SSF63380 100 195 1.58E-22 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 204 223 1.1E-24 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 229 238 1.1E-24 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 130 142 1.1E-24 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 189 198 1.1E-24 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 293 301 1.1E-24 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 PRINTS PR00410 Phenol hydroxylase reductase family signature 145 152 1.1E-24 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 Gene3D G3DSA:3.10.20.30 1 96 1.4E-25 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 SUPERFAMILY SSF54292 2 96 1.21E-26 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 SUPERFAMILY SSF52343 198 327 1.03E-33 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 Gene3D G3DSA:3.40.50.80 197 326 5.9E-27 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 79 2.4E-14 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 Gene3D G3DSA:2.40.30.10 97 192 4.3E-22 T 12-10-2018 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 Pfam PF00175 Oxidoreductase NAD-binding domain 205 307 3.2E-23 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YPK_3192 8a227cb5abb67e0eed1bcdebe52f77c4 329 Pfam PF00970 Oxidoreductase FAD-binding domain 103 194 2.4E-20 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YPK_3367 7286f0a74e11b91a9229d3a4b2091611 427 Gene3D G3DSA:3.10.580.10 202 331 3.8E-43 T 12-10-2018 YPK_3367 7286f0a74e11b91a9229d3a4b2091611 427 SMART SM01091 343 420 3.4E-23 T 12-10-2018 IPR005170 Transporter-associated domain YPK_3367 7286f0a74e11b91a9229d3a4b2091611 427 Gene3D G3DSA:3.30.465.10 341 419 9.7E-25 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_3367 7286f0a74e11b91a9229d3a4b2091611 427 SUPERFAMILY SSF56176 341 424 8.45E-19 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_3367 7286f0a74e11b91a9229d3a4b2091611 427 Pfam PF01595 Domain of unknown function DUF21 12 185 1.8E-51 T 12-10-2018 IPR002550 CNNM, transmembrane domain YPK_3367 7286f0a74e11b91a9229d3a4b2091611 427 SUPERFAMILY SSF54631 193 330 1.64E-22 T 12-10-2018 YPK_3367 7286f0a74e11b91a9229d3a4b2091611 427 Pfam PF03471 Transporter associated domain 345 418 3.0E-17 T 12-10-2018 IPR005170 Transporter-associated domain YPK_0247 e84bd25886ab1888f4ec11029f7f461f 706 Pfam PF13515 Fusaric acid resistance protein-like 379 499 2.8E-19 T 12-10-2018 YPK_0247 e84bd25886ab1888f4ec11029f7f461f 706 Pfam PF12805 FUSC-like inner membrane protein yccS 64 332 3.9E-68 T 12-10-2018 IPR032692 Integral membrane protein YccS, N-terminal YPK_0247 e84bd25886ab1888f4ec11029f7f461f 706 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 13 686 4.7E-155 T 12-10-2018 IPR010020 Integral membrane protein, YccS/YhfK YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 SUPERFAMILY SSF52540 3 233 5.32E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 Gene3D G3DSA:1.10.3710.10 343 444 1.3E-37 T 12-10-2018 YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 SUPERFAMILY SSF48019 249 431 1.19E-70 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 Pfam PF16193 AAA C-terminal domain 185 264 3.9E-21 T 12-10-2018 IPR032423 AAA C-terminal domain YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 SMART SM00382 46 162 4.6E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 Gene3D G3DSA:3.40.50.300 1 161 8.1E-47 T 12-10-2018 YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 50 156 3.7E-15 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 Pfam PF12002 MgsA AAA+ ATPase C terminal 265 431 4.3E-64 T 12-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 Gene3D G3DSA:1.20.272.10 238 342 1.6E-43 T 12-10-2018 YPK_2683 fd6276b334e2312317e8d2c13fdafff7 444 Gene3D G3DSA:1.10.8.60 162 237 3.6E-28 T 12-10-2018 YPK_1007 36f064ec6082ada08017705c09492430 145 Gene3D G3DSA:3.30.700.10 22 137 1.1E-36 T 12-10-2018 YPK_1007 36f064ec6082ada08017705c09492430 145 SUPERFAMILY SSF54523 35 138 2.56E-36 T 12-10-2018 YPK_1007 36f064ec6082ada08017705c09492430 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 27 1.8E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1007 36f064ec6082ada08017705c09492430 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1007 36f064ec6082ada08017705c09492430 145 Pfam PF08334 Type II secretion system (T2SS), protein G 32 137 6.9E-36 T 12-10-2018 IPR013545 Type II secretion system protein G YPK_1007 36f064ec6082ada08017705c09492430 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 28 8.6E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1007 36f064ec6082ada08017705c09492430 145 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 8.0E-22 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 YPK_1007 36f064ec6082ada08017705c09492430 145 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 8.0E-22 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 YPK_1007 36f064ec6082ada08017705c09492430 145 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 7 137 1.8E-60 T 12-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 Gene3D G3DSA:3.40.710.10 108 766 2.6E-263 T 12-10-2018 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 PIRSF PIRSF002799 41 826 0.0 T 12-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 Pfam PF00912 Transglycosylase 214 385 5.0E-55 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 SUPERFAMILY SSF56601 367 782 1.01E-105 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 73 800 0.0 T 12-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 Gene3D G3DSA:1.20.5.100 60 101 2.7E-19 T 12-10-2018 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 Gene3D G3DSA:3.30.2060.10 116 205 2.6E-263 T 12-10-2018 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 SUPERFAMILY SSF53955 201 408 1.6E-65 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 Pfam PF00905 Penicillin binding protein transpeptidase domain 478 717 2.0E-20 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 Gene3D G3DSA:1.10.3810.10 206 409 2.6E-263 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 Pfam PF14814 Bifunctional transglycosylase second domain 118 202 1.9E-29 T 12-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3463 feec07c7581b31bd3ad41e0f3db8c4c7 826 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 1 83 4.6E-33 T 12-10-2018 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 458 4.9E-149 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 SUPERFAMILY SSF51905 2 337 1.42E-57 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PIRSF PIRSF000350 1 468 2.0E-85 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 Gene3D G3DSA:3.50.50.60 9 332 1.9E-124 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 Gene3D G3DSA:3.50.50.60 150 271 1.9E-124 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 Gene3D G3DSA:3.30.390.30 346 467 1.1E-45 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 1.8E-35 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 SUPERFAMILY SSF55424 343 466 5.84E-39 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 1.2E-68 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 1.4E-62 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 6.2E-41 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 6.2E-41 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 6.2E-41 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 6.2E-41 T 12-10-2018 YPK_3489 ed8e9a1c365b4bd6493269c555d6d874 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 6.2E-41 T 12-10-2018 YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 405 1.2E-6 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 SMART SM01086 335 434 4.5E-24 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 SMART SM00382 49 332 1.1E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 103 8.7E-7 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 187 329 2.2E-41 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 SUPERFAMILY SSF52540 3 441 1.1E-94 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Gene3D G3DSA:1.10.8.60 335 440 4.4E-42 T 12-10-2018 YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 2.4E-231 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 YPK_4104 64bdcba2a5f0d7fc04186d55ad4e3b6a 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 43.688 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 YPK_3199 2e58ff2f637f109514aee3cf798b2aa0 187 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 15 184 38.792 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 YPK_3199 2e58ff2f637f109514aee3cf798b2aa0 187 Gene3D G3DSA:3.40.50.2020 2 187 1.0E-70 T 12-10-2018 YPK_3199 2e58ff2f637f109514aee3cf798b2aa0 187 Pfam PF00156 Phosphoribosyl transferase domain 35 164 2.1E-18 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YPK_3199 2e58ff2f637f109514aee3cf798b2aa0 187 SUPERFAMILY SSF53271 17 184 1.56E-53 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_3199 2e58ff2f637f109514aee3cf798b2aa0 187 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 15 183 1.7E-73 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 YPK_4085 9fd95fca3c688c513967d2c6369bb4a9 205 PIRSF PIRSF019876 1 205 5.9E-84 T 12-10-2018 IPR010495 Haem-binding HasA YPK_4085 9fd95fca3c688c513967d2c6369bb4a9 205 Gene3D G3DSA:3.30.1500.10 1 180 4.0E-80 T 12-10-2018 IPR036912 Haem-binding HasA superfamily YPK_4085 9fd95fca3c688c513967d2c6369bb4a9 205 SUPERFAMILY SSF54621 2 176 1.14E-67 T 12-10-2018 IPR036912 Haem-binding HasA superfamily YPK_4085 9fd95fca3c688c513967d2c6369bb4a9 205 Pfam PF06438 Heme-binding protein A (HasA) 1 205 1.2E-87 T 12-10-2018 IPR010495 Haem-binding HasA YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 428 45.542 T 12-10-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 2.2E-53 T 12-10-2018 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 2.2E-53 T 12-10-2018 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 2.2E-53 T 12-10-2018 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 2.2E-53 T 12-10-2018 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 2.2E-53 T 12-10-2018 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 2.2E-53 T 12-10-2018 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 2.2E-53 T 12-10-2018 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 2.2E-53 T 12-10-2018 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 2.2E-116 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 Gene3D G3DSA:1.10.3860.10 1 427 3.9E-136 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 SUPERFAMILY SSF118215 8 412 1.57E-123 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YPK_3920 28c9bbb532be10989994cd4bf4616b81 438 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site YPK_1591 a5a28a09bcf7beb86a496eedcf1ae600 285 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 284 55.644 T 12-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 YPK_1591 a5a28a09bcf7beb86a496eedcf1ae600 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 31 279 8.6E-80 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YPK_1591 a5a28a09bcf7beb86a496eedcf1ae600 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 123 143 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 YPK_1591 a5a28a09bcf7beb86a496eedcf1ae600 285 TIGRFAM TIGR01929 menB: naphthoate synthase 22 281 4.2E-151 T 12-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 YPK_1591 a5a28a09bcf7beb86a496eedcf1ae600 285 SUPERFAMILY SSF52096 19 280 9.68E-79 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_1591 a5a28a09bcf7beb86a496eedcf1ae600 285 Gene3D G3DSA:3.90.226.10 1 222 3.2E-86 T 12-10-2018 YPK_1591 a5a28a09bcf7beb86a496eedcf1ae600 285 Gene3D G3DSA:1.10.12.10 223 273 2.4E-31 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal YPK_2662 80047d184959eaa2daaf9939cf3fc927 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 67 3.2E-20 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2662 80047d184959eaa2daaf9939cf3fc927 69 SMART SM00357 5 69 1.1E-12 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_2662 80047d184959eaa2daaf9939cf3fc927 69 PRINTS PR00050 Cold shock protein signature 27 36 4.9E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2662 80047d184959eaa2daaf9939cf3fc927 69 PRINTS PR00050 Cold shock protein signature 42 60 4.9E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2662 80047d184959eaa2daaf9939cf3fc927 69 PRINTS PR00050 Cold shock protein signature 6 21 4.9E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2662 80047d184959eaa2daaf9939cf3fc927 69 SUPERFAMILY SSF50249 3 67 1.84E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2662 80047d184959eaa2daaf9939cf3fc927 69 PIRSF PIRSF002599 1 69 4.2E-18 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_2662 80047d184959eaa2daaf9939cf3fc927 69 Gene3D G3DSA:2.40.50.140 5 68 5.8E-21 T 12-10-2018 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 2.3E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 2.3E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 2.3E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 2.3E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 Pfam PF01926 50S ribosome-binding GTPase 161 284 1.0E-23 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 SUPERFAMILY SSF82051 2 157 1.31E-56 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.084 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 2.8E-146 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 PIRSF PIRSF002401 1 375 1.3E-139 T 12-10-2018 IPR035101 GTP-binding protein, Obg-type YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 Pfam PF01018 GTP1/OBG 4 156 6.7E-58 T 12-10-2018 IPR006169 GTP1/OBG domain YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 Gene3D G3DSA:3.40.50.300 159 339 1.3E-52 T 12-10-2018 YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 SUPERFAMILY SSF52540 151 339 3.54E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 Gene3D G3DSA:2.70.210.12 1 158 5.7E-62 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily YPK_3743 8eb153cfb823fe749ec91f290ba039a2 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 12-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 YPK_1482 1b97f4182aa764b170e504ca9c5f3a0b 186 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 29 152 2.2E-31 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YPK_1482 1b97f4182aa764b170e504ca9c5f3a0b 186 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 19 159 9.9E-44 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YPK_1482 1b97f4182aa764b170e504ca9c5f3a0b 186 Gene3D G3DSA:2.60.40.4150 43 157 1.4E-27 T 12-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily YPK_1001 1e4a882dc734941665e657ee718f0417 251 SUPERFAMILY SSF53056 42 250 2.09E-53 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 YPK_1001 1e4a882dc734941665e657ee718f0417 251 Gene3D G3DSA:3.40.1050.10 47 251 4.4E-55 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 YPK_1001 1e4a882dc734941665e657ee718f0417 251 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 44 7.5E-4 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_1001 1e4a882dc734941665e657ee718f0417 251 SMART SM00947 91 251 7.5E-43 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YPK_1001 1e4a882dc734941665e657ee718f0417 251 Pfam PF00484 Carbonic anhydrase 98 247 2.0E-35 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YPK_0241 329bd732978288e2ee15f0815e84983a 437 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 196 410 3.9E-50 T 12-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 YPK_0241 329bd732978288e2ee15f0815e84983a 437 Gene3D G3DSA:3.90.110.10 170 436 3.7E-99 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 YPK_0241 329bd732978288e2ee15f0815e84983a 437 SUPERFAMILY SSF56327 172 435 8.63E-92 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 YPK_0241 329bd732978288e2ee15f0815e84983a 437 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 171 - T 12-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 Gene3D G3DSA:3.40.50.720 1 169 3.4E-61 T 12-10-2018 YPK_0241 329bd732978288e2ee15f0815e84983a 437 Pfam PF02056 Family 4 glycosyl hydrolase 5 186 5.0E-55 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 4.1E-44 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 4.1E-44 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 192 204 4.1E-44 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 4.1E-44 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 166 177 4.1E-44 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 4.1E-44 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 4.1E-44 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 YPK_0241 329bd732978288e2ee15f0815e84983a 437 SUPERFAMILY SSF51735 3 169 1.15E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1877 22f70820e7e280f1621dc4508ab88494 155 Pfam PF05433 Glycine zipper 2TM domain 62 102 3.2E-7 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 Gene3D G3DSA:2.40.50.140 2 69 7.7E-29 T 12-10-2018 YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 6.8E-32 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 SUPERFAMILY SSF50249 3 69 1.79E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 SMART SM00357 6 70 1.7E-29 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 12-10-2018 IPR019844 Cold-shock conserved site YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 PRINTS PR00050 Cold shock protein signature 43 61 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 PRINTS PR00050 Cold shock protein signature 7 22 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 PRINTS PR00050 Cold shock protein signature 28 37 2.1E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0442 877b5056b608ecd127c8ea7eeebe2daf 70 PIRSF PIRSF002599 1 70 1.5E-23 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_4140 a5d67ba558b6fe71fbcd47adfa83b37c 144 SMART SM00450 41 139 2.0E-18 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_4140 a5d67ba558b6fe71fbcd47adfa83b37c 144 Gene3D G3DSA:3.40.250.10 23 142 1.4E-24 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_4140 a5d67ba558b6fe71fbcd47adfa83b37c 144 SUPERFAMILY SSF52821 17 143 1.7E-29 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_4140 a5d67ba558b6fe71fbcd47adfa83b37c 144 Pfam PF00581 Rhodanese-like domain 44 134 1.1E-16 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_1835 c867403c301ed13341f14e3fdd311da5 554 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 11 239 3.9E-38 T 12-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 YPK_1835 c867403c301ed13341f14e3fdd311da5 554 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 3 553 43.767 T 12-10-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 66 136 1.8E-19 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 SUPERFAMILY SSF47413 5 59 1.19E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 Gene3D G3DSA:1.10.260.40 5 64 2.9E-7 T 12-10-2018 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 SMART SM00530 6 62 5.0E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 Pfam PF13521 AAA domain 234 394 2.4E-33 T 12-10-2018 IPR038727 NadR/Ttd14, AAA domain YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 PIRSF PIRSF004776 2 415 8.1E-221 T 12-10-2018 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 SUPERFAMILY SSF52540 232 404 1.52E-26 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 Pfam PF01381 Helix-turn-helix 7 58 2.9E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 SUPERFAMILY SSF52374 65 229 5.09E-20 T 12-10-2018 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 Gene3D G3DSA:3.40.50.620 65 230 3.1E-45 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 Gene3D G3DSA:3.40.50.300 231 399 1.2E-57 T 12-10-2018 YPK_3620 6b99e2a74f1f2aa67e04f6984419dcf1 423 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 64 395 3.8E-154 T 12-10-2018 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0000309|GO:0009435 KEGG: 00760+2.7.7.1+2.7.1.22 YPK_1851 31275139bee397d5a4dd05ac89376b30 406 Gene3D G3DSA:3.90.1150.10 8 398 8.4E-170 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1851 31275139bee397d5a4dd05ac89376b30 406 Hamap MF_01831 Cysteine desulfurase [sufS]. 1 406 72.925 T 12-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YPK_1851 31275139bee397d5a4dd05ac89376b30 406 SUPERFAMILY SSF53383 4 401 9.93E-126 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1851 31275139bee397d5a4dd05ac89376b30 406 Pfam PF00266 Aminotransferase class-V 25 394 8.4E-159 T 12-10-2018 IPR000192 Aminotransferase class V domain YPK_1851 31275139bee397d5a4dd05ac89376b30 406 Gene3D G3DSA:3.40.640.10 36 297 8.4E-170 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1851 31275139bee397d5a4dd05ac89376b30 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 7 405 1.2E-180 T 12-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YPK_1851 31275139bee397d5a4dd05ac89376b30 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 217 236 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPK_3992 ab6eeea0e1971aa4817a823fc5ae39ae 371 SUPERFAMILY SSF51695 40 364 7.59E-91 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_3992 ab6eeea0e1971aa4817a823fc5ae39ae 371 Gene3D G3DSA:3.20.20.190 38 365 5.6E-132 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_3992 ab6eeea0e1971aa4817a823fc5ae39ae 371 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 44 358 4.3E-71 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YPK_4154 698270ae59188f8d755aff7ecd13ae45 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.332 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4154 698270ae59188f8d755aff7ecd13ae45 78 Pfam PF00830 Ribosomal L28 family 3 62 6.5E-26 T 12-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4154 698270ae59188f8d755aff7ecd13ae45 78 SUPERFAMILY SSF143800 1 77 2.94E-30 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4154 698270ae59188f8d755aff7ecd13ae45 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 4.1E-29 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4154 698270ae59188f8d755aff7ecd13ae45 78 Gene3D G3DSA:2.30.170.40 2 78 3.3E-33 T 12-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3040 7cb1a0b966bcd27a816670e0e28a14a2 368 Pfam PF01261 Xylose isomerase-like TIM barrel 104 300 1.2E-22 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_3040 7cb1a0b966bcd27a816670e0e28a14a2 368 SUPERFAMILY SSF51658 75 361 2.49E-53 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily YPK_3040 7cb1a0b966bcd27a816670e0e28a14a2 368 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 75 361 1.1E-125 T 12-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 YPK_3040 7cb1a0b966bcd27a816670e0e28a14a2 368 Gene3D G3DSA:3.20.20.150 67 361 2.1E-71 T 12-10-2018 YPK_1610 2dfec31dcdb98de48d38c460e2497d1e 408 SUPERFAMILY SSF50129 57 241 8.18E-44 T 12-10-2018 IPR011032 GroES-like superfamily YPK_1610 2dfec31dcdb98de48d38c460e2497d1e 408 Gene3D G3DSA:3.40.50.720 219 356 8.1E-95 T 12-10-2018 YPK_1610 2dfec31dcdb98de48d38c460e2497d1e 408 Pfam PF00107 Zinc-binding dehydrogenase 242 357 2.8E-23 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YPK_1610 2dfec31dcdb98de48d38c460e2497d1e 408 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 85 199 2.1E-25 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YPK_1610 2dfec31dcdb98de48d38c460e2497d1e 408 Gene3D G3DSA:3.90.180.10 68 396 8.1E-95 T 12-10-2018 YPK_1610 2dfec31dcdb98de48d38c460e2497d1e 408 SUPERFAMILY SSF51735 209 363 5.47E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1610 2dfec31dcdb98de48d38c460e2497d1e 408 SMART SM00829 68 406 0.0012 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YPK_3195 0b4a923e235046d2194499828fe75992 624 SUPERFAMILY SSF55874 6 216 2.88E-66 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3195 0b4a923e235046d2194499828fe75992 624 Gene3D G3DSA:3.30.565.10 2 218 2.6E-79 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3195 0b4a923e235046d2194499828fe75992 624 Gene3D G3DSA:3.40.50.11260 402 492 2.0E-36 T 12-10-2018 YPK_3195 0b4a923e235046d2194499828fe75992 624 Gene3D G3DSA:3.30.230.80 229 401 8.0E-71 T 12-10-2018 YPK_3195 0b4a923e235046d2194499828fe75992 624 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 27 36 - T 12-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 YPK_3195 0b4a923e235046d2194499828fe75992 624 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 184 2.1E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3195 0b4a923e235046d2194499828fe75992 624 Pfam PF00183 Hsp90 protein 215 623 1.4E-126 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 YPK_3195 0b4a923e235046d2194499828fe75992 624 SUPERFAMILY SSF54211 230 485 1.97E-100 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3195 0b4a923e235046d2194499828fe75992 624 SMART SM00387 29 186 4.1E-10 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3195 0b4a923e235046d2194499828fe75992 624 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 623 32.917 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 YPK_3195 0b4a923e235046d2194499828fe75992 624 Gene3D G3DSA:1.20.120.790 493 624 8.2E-47 T 12-10-2018 IPR037196 HSP90, C-terminal domain YPK_3195 0b4a923e235046d2194499828fe75992 624 SUPERFAMILY SSF110942 510 623 9.68E-36 T 12-10-2018 IPR037196 HSP90, C-terminal domain YPK_3195 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 7 27 3.2E-65 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YPK_3195 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 28 50 3.2E-65 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YPK_3195 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 77 94 3.2E-65 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YPK_3195 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 95 112 3.2E-65 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YPK_3195 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 192 210 3.2E-65 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YPK_3195 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 174 191 3.2E-65 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YPK_3195 0b4a923e235046d2194499828fe75992 624 PRINTS PR00775 90kDa heat shock protein signature 122 144 3.2E-65 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal YPK_3195 0b4a923e235046d2194499828fe75992 624 PIRSF PIRSF002583 2 624 1.4E-218 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 YPK_0802 a0bd9edb868e91630b92a8cb0cf6c320 578 Pfam PF00691 OmpA family 447 543 6.5E-15 T 12-10-2018 IPR006665 OmpA-like domain YPK_0802 a0bd9edb868e91630b92a8cb0cf6c320 578 SUPERFAMILY SSF103088 427 548 2.22E-29 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_0802 a0bd9edb868e91630b92a8cb0cf6c320 578 Gene3D G3DSA:3.30.1330.60 436 558 2.1E-28 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_0433 b68deb1ef8825e3a9c1009350ede4707 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 312 1.0E-42 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1056 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Gene3D G3DSA:3.30.1850.10 1 122 2.5E-50 T 12-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 YPK_1056 ea93904e0faab3c4fb74f6ce2f6f53f2 454 SUPERFAMILY SSF102405 120 330 4.88E-42 T 12-10-2018 YPK_1056 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Pfam PF03641 Possible lysine decarboxylase 190 329 8.1E-33 T 12-10-2018 IPR031100 LOG family YPK_1056 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 2.3E-45 T 12-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 YPK_1056 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 452 4.4E-58 T 12-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 YPK_1056 ea93904e0faab3c4fb74f6ce2f6f53f2 454 Gene3D G3DSA:3.40.50.450 124 452 4.3E-123 T 12-10-2018 YPK_3022 b8f8bc5d465199749e9adf230fbdcdbc 370 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 11 366 29.23 T 12-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3022 b8f8bc5d465199749e9adf230fbdcdbc 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 12-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3022 b8f8bc5d465199749e9adf230fbdcdbc 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 4.9E-136 T 12-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3022 b8f8bc5d465199749e9adf230fbdcdbc 370 Pfam PF01098 Cell cycle protein 21 364 7.0E-122 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0535 fca7bd45e78a7350898011f91ceebc7e 241 Gene3D G3DSA:1.10.3810.10 53 239 3.8E-53 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0535 fca7bd45e78a7350898011f91ceebc7e 241 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 10 232 39.396 T 12-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0535 fca7bd45e78a7350898011f91ceebc7e 241 Pfam PF00912 Transglycosylase 60 227 1.2E-50 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0535 fca7bd45e78a7350898011f91ceebc7e 241 SUPERFAMILY SSF53955 51 231 2.42E-61 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_0535 fca7bd45e78a7350898011f91ceebc7e 241 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 19 230 2.8E-83 T 12-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 SUPERFAMILY SSF81296 117 223 1.28E-36 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 SMART SM00642 247 596 8.8E-7 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 PIRSF PIRSF000463 6 727 2.6E-286 T 12-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 SUPERFAMILY SSF81296 16 115 1.7E-16 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 SUPERFAMILY SSF51445 233 620 5.07E-114 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 Gene3D G3DSA:2.60.40.10 2 221 9.9E-79 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 723 5.7E-301 T 12-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 726 43.934 T 12-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 SUPERFAMILY SSF51011 623 726 8.51E-34 T 12-10-2018 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 1.7E-25 T 12-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 Gene3D G3DSA:2.60.40.1180 623 727 5.0E-38 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 Gene3D G3DSA:3.20.20.80 231 612 1.7E-173 T 12-10-2018 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 Pfam PF00128 Alpha amylase, catalytic domain 273 347 6.6E-10 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_0147 ad5bc38dabbf698830bda429ee9e49e2 727 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 724 2.2E-20 T 12-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 Gene3D G3DSA:1.10.10.10 2 87 7.3E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 Gene3D G3DSA:3.40.190.10 93 293 4.2E-49 T 12-10-2018 YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 SUPERFAMILY SSF46785 5 89 1.57E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.2E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 Gene3D G3DSA:3.40.190.10 166 268 4.2E-49 T 12-10-2018 YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 Pfam PF03466 LysR substrate binding domain 91 294 2.2E-37 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 SUPERFAMILY SSF53850 92 294 2.17E-39 T 12-10-2018 YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.4E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.4E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3077 5bbb97cd3ece4421e16b2bf68a66603b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.4E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Gene3D G3DSA:3.40.50.300 438 651 2.6E-78 T 12-10-2018 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 342 1.1E-12 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 SUPERFAMILY SSF52540 168 426 8.72E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 SUPERFAMILY SSF52540 436 747 1.02E-77 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 SUPERFAMILY SSF81923 1 141 3.92E-58 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Gene3D G3DSA:1.10.1780.10 1 143 7.4E-45 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 SMART SM01086 652 743 9.2E-34 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 1.2E-36 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 1.2E-36 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 1.2E-36 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 1.2E-36 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 517 535 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 SMART SM00382 486 653 4.0E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 SMART SM00382 205 351 4.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.8E-14 T 12-10-2018 IPR004176 Clp, N-terminal YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 652 732 2.8E-24 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 486 646 1.5E-48 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Gene3D G3DSA:1.10.8.60 652 757 8.4E-36 T 12-10-2018 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Gene3D G3DSA:1.10.8.60 351 437 1.8E-35 T 12-10-2018 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 Gene3D G3DSA:3.40.50.300 155 349 3.2E-63 T 12-10-2018 YPK_2692 a307f01ec5c699fe161db1af1a475e7f 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 733 0.0 T 12-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 YPK_0190 4fec86b5fe41426f7755672c610cd194 735 Pfam PF10145 Phage-related minor tail protein 210 406 7.5E-22 T 12-10-2018 IPR010090 Phage tail tape measure protein YPK_1945 a7882f9c8a5327a7b5abac011b53d4b9 172 SUPERFAMILY SSF53155 7 92 3.18E-6 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YPK_1945 a7882f9c8a5327a7b5abac011b53d4b9 172 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 137 143 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YPK_1945 a7882f9c8a5327a7b5abac011b53d4b9 172 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 87 166 1.6E-37 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YPK_1945 a7882f9c8a5327a7b5abac011b53d4b9 172 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 21 167 42.314 T 12-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 YPK_1945 a7882f9c8a5327a7b5abac011b53d4b9 172 Gene3D G3DSA:1.10.10.10 86 169 8.3E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1945 a7882f9c8a5327a7b5abac011b53d4b9 172 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 9 83 8.2E-12 T 12-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YPK_1945 a7882f9c8a5327a7b5abac011b53d4b9 172 SUPERFAMILY SSF46767 86 169 3.92E-34 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 YPK_1945 a7882f9c8a5327a7b5abac011b53d4b9 172 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 167 3.5E-34 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YPK_0113 96ba44fa45a7e00baa2a4968ca00ef00 375 Pfam PF13556 PucR C-terminal helix-turn-helix domain 315 373 3.6E-19 T 12-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain YPK_0113 96ba44fa45a7e00baa2a4968ca00ef00 375 Pfam PF05651 Putative sugar diacid recognition 6 139 2.3E-52 T 12-10-2018 IPR008599 Putative sugar diacid recognition YPK_0113 96ba44fa45a7e00baa2a4968ca00ef00 375 Gene3D G3DSA:1.10.10.2840 248 375 1.1E-17 T 12-10-2018 YPK_3732 8a1dd549e4f934150cdac4c7132a5caa 150 Pfam PF02576 RimP N-terminal domain 11 82 2.0E-28 T 12-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal YPK_3732 8a1dd549e4f934150cdac4c7132a5caa 150 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 150 24.064 T 12-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 YPK_3732 8a1dd549e4f934150cdac4c7132a5caa 150 Pfam PF17384 RimP C-terminal SH3 domain 85 150 1.6E-22 T 12-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal YPK_3732 8a1dd549e4f934150cdac4c7132a5caa 150 SUPERFAMILY SSF74942 83 150 1.22E-16 T 12-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily YPK_3732 8a1dd549e4f934150cdac4c7132a5caa 150 Gene3D G3DSA:3.30.300.70 1 79 6.2E-25 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily YPK_3732 8a1dd549e4f934150cdac4c7132a5caa 150 SUPERFAMILY SSF75420 3 82 1.7E-24 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily YPK_4244 de2aeed91b22fd33b7762cc31acd5262 399 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 79 3.8E-38 T 12-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_4244 de2aeed91b22fd33b7762cc31acd5262 399 Gene3D G3DSA:3.40.50.720 1 399 9.7E-186 T 12-10-2018 YPK_4244 de2aeed91b22fd33b7762cc31acd5262 399 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 1.2E-106 T 12-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_4244 de2aeed91b22fd33b7762cc31acd5262 399 Pfam PF07055 Enoyl reductase FAD binding domain 324 387 2.4E-28 T 12-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_4244 de2aeed91b22fd33b7762cc31acd5262 399 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 393 54.597 T 12-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_0242 f795ada360a598fdfc0e0a8cc1e04bbe 189 Gene3D G3DSA:2.40.100.10 24 189 1.6E-70 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily YPK_0242 f795ada360a598fdfc0e0a8cc1e04bbe 189 PIRSF PIRSF001467 15 187 1.1E-28 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 YPK_0242 f795ada360a598fdfc0e0a8cc1e04bbe 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 58 7.0E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YPK_0242 f795ada360a598fdfc0e0a8cc1e04bbe 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 7.0E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YPK_0242 f795ada360a598fdfc0e0a8cc1e04bbe 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 7.0E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YPK_0242 f795ada360a598fdfc0e0a8cc1e04bbe 189 SUPERFAMILY SSF50891 26 188 1.23E-57 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily YPK_0242 f795ada360a598fdfc0e0a8cc1e04bbe 189 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 64 81 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 YPK_0242 f795ada360a598fdfc0e0a8cc1e04bbe 189 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 187 2.1E-48 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 Pfam PF01627 Hpt domain 812 871 8.5E-10 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 SUPERFAMILY SSF47226 798 891 5.63E-18 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 Gene3D G3DSA:1.20.120.160 796 895 7.6E-10 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 Pfam PF16359 RcsD-ABL domain 684 783 7.3E-38 T 12-10-2018 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 Gene3D G3DSA:1.10.287.130 461 512 9.9E-23 T 12-10-2018 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 562 671 5.7E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 Gene3D G3DSA:3.30.565.10 513 671 9.9E-23 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 635 653 3.3E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 659 672 3.3E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 615 3.3E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 Hamap MF_00980 Phosphotransferase RcsD [rcsD]. 9 892 26.516 T 12-10-2018 IPR030861 Phosphotransferase RcsD GO:0000160|GO:0005887|GO:0009927 YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 Gene3D G3DSA:3.40.50.11620 683 795 6.9E-41 T 12-10-2018 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 SMART SM00387 562 675 2.4E-11 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2842 b78195542cdadf62d44b51e8dc741adc 897 SUPERFAMILY SSF55874 504 673 5.76E-20 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1671 cec1a0546b7174d0efc9ef10cc0fc264 194 Gene3D G3DSA:1.10.10.10 102 190 2.5E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1671 cec1a0546b7174d0efc9ef10cc0fc264 194 SUPERFAMILY SSF46894 123 188 2.58E-14 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1671 cec1a0546b7174d0efc9ef10cc0fc264 194 SMART SM00421 130 187 1.1E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1671 cec1a0546b7174d0efc9ef10cc0fc264 194 Pfam PF00196 Bacterial regulatory proteins, luxR family 133 183 5.8E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1592 322239b51ac0cae94ad234e16304193a 323 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 321 23.655 T 12-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 YPK_1592 322239b51ac0cae94ad234e16304193a 323 SMART SM00922 115 210 4.5E-9 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPK_1592 322239b51ac0cae94ad234e16304193a 323 SUPERFAMILY SSF51604 108 307 1.57E-51 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_1592 322239b51ac0cae94ad234e16304193a 323 SUPERFAMILY SSF54826 1 98 1.77E-28 T 12-10-2018 YPK_1592 322239b51ac0cae94ad234e16304193a 323 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 307 9.4E-117 T 12-10-2018 YPK_1592 322239b51ac0cae94ad234e16304193a 323 Pfam PF13378 Enolase C-terminal domain-like 127 283 2.3E-14 T 12-10-2018 IPR029065 Enolase C-terminal domain-like YPK_1592 322239b51ac0cae94ad234e16304193a 323 Gene3D G3DSA:3.20.20.120 98 295 1.4E-126 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_1592 322239b51ac0cae94ad234e16304193a 323 Gene3D G3DSA:3.30.390.10 4 302 1.4E-126 T 12-10-2018 IPR029017 Enolase-like, N-terminal YPK_3776 ccc5823a88834645dda171f143711028 652 Gene3D G3DSA:3.90.780.10 404 591 4.0E-50 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 Pfam PF02872 5'-nucleotidase, C-terminal domain 360 554 5.6E-21 T 12-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 SUPERFAMILY SSF56300 23 357 2.95E-84 T 12-10-2018 YPK_3776 ccc5823a88834645dda171f143711028 652 Pfam PF00149 Calcineurin-like phosphoesterase 28 263 2.0E-9 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YPK_3776 ccc5823a88834645dda171f143711028 652 SUPERFAMILY SSF55816 359 600 8.89E-38 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 PRINTS PR01607 Apyrase family signature 219 236 1.9E-31 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 PRINTS PR01607 Apyrase family signature 432 455 1.9E-31 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 PRINTS PR01607 Apyrase family signature 534 553 1.9E-31 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 PRINTS PR01607 Apyrase family signature 26 44 1.9E-31 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 PRINTS PR01607 Apyrase family signature 247 270 1.9E-31 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 PRINTS PR01607 Apyrase family signature 287 307 1.9E-31 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 26 651 0.0 T 12-10-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 YPK_3776 ccc5823a88834645dda171f143711028 652 Gene3D G3DSA:3.60.21.10 20 358 4.9E-148 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like YPK_3776 ccc5823a88834645dda171f143711028 652 ProSitePatterns PS00785 5'-nucleotidase signature 1. 28 40 - T 12-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3776 ccc5823a88834645dda171f143711028 652 ProSitePatterns PS00786 5'-nucleotidase signature 2. 113 124 - T 12-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 YPK_3116 3830c94bdcaf1473c67850d3400f8cd1 356 Gene3D G3DSA:3.55.50.10 91 175 1.5E-97 T 12-10-2018 YPK_3116 3830c94bdcaf1473c67850d3400f8cd1 356 SUPERFAMILY SSF69279 1 175 1.43E-51 T 12-10-2018 YPK_3116 3830c94bdcaf1473c67850d3400f8cd1 356 SUPERFAMILY SSF69279 177 346 1.19E-45 T 12-10-2018 YPK_3116 3830c94bdcaf1473c67850d3400f8cd1 356 Pfam PF05954 Phage late control gene D protein (GPD) 27 180 5.5E-8 T 12-10-2018 YPK_3116 3830c94bdcaf1473c67850d3400f8cd1 356 Gene3D G3DSA:3.30.1920.10 199 275 1.5E-97 T 12-10-2018 IPR023399 Baseplate-like, two-layer sandwich fold YPK_3116 3830c94bdcaf1473c67850d3400f8cd1 356 PIRSF PIRSF004440 1 351 1.5E-70 T 12-10-2018 IPR026276 Baseplate protein GpP YPK_3116 3830c94bdcaf1473c67850d3400f8cd1 356 Gene3D G3DSA:2.30.300.10 6 332 1.5E-97 T 12-10-2018 YPK_3472 945bd7d88f19bc087af1445881c2763a 265 PIRSF PIRSF000388 1 265 2.1E-98 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 YPK_3472 945bd7d88f19bc087af1445881c2763a 265 SUPERFAMILY SSF51621 4 264 2.92E-104 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_3472 945bd7d88f19bc087af1445881c2763a 265 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 264 41.956 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 YPK_3472 945bd7d88f19bc087af1445881c2763a 265 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 265 2.3E-117 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 YPK_3472 945bd7d88f19bc087af1445881c2763a 265 Gene3D G3DSA:3.20.20.60 1 264 6.8E-104 T 12-10-2018 YPK_3472 945bd7d88f19bc087af1445881c2763a 265 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 259 5.8E-105 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 YPK_1011 66a5180256880b59840a3a492583fbd8 318 Pfam PF03934 Type II secretion system (T2SS), protein K 36 304 1.3E-18 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 YPK_1011 66a5180256880b59840a3a492583fbd8 318 PIRSF PIRSF002786 1 318 2.1E-63 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 YPK_1011 66a5180256880b59840a3a492583fbd8 318 SUPERFAMILY SSF158544 203 264 1.54E-12 T 12-10-2018 IPR038072 GspK, central domain superfamily YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Pfam PF00270 DEAD/DEAH box helicase 15 172 4.9E-21 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 SMART SM00341 518 597 3.1E-26 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Gene3D G3DSA:1.10.150.80 511 597 1.2E-30 T 12-10-2018 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Gene3D G3DSA:3.40.50.300 1 195 1.1E-85 T 12-10-2018 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 SUPERFAMILY SSF52540 195 443 5.39E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 SMART SM00490 237 318 5.9E-28 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Pfam PF16124 RecQ zinc-binding 330 391 3.8E-16 T 12-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 SUPERFAMILY SSF52540 2 188 2.03E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 SMART SM00487 9 205 2.7E-32 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 SMART SM00956 398 501 1.2E-51 T 12-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Gene3D G3DSA:1.10.10.10 328 510 2.4E-51 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 2 451 2.4E-200 T 12-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 2 590 1.3E-265 T 12-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 SUPERFAMILY SSF47819 519 595 2.14E-26 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Pfam PF00570 HRDC domain 522 588 1.4E-23 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Gene3D G3DSA:3.40.50.300 196 327 4.5E-44 T 12-10-2018 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Pfam PF09382 RQC domain 393 504 2.7E-37 T 12-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 YPK_3998 d4f671f0f197b2a62773afc4ac1be708 597 Pfam PF00271 Helicase conserved C-terminal domain 215 317 1.1E-19 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_0763 f6fc0f19ce14ef561ff9f94da7db0681 1254 Gene3D G3DSA:2.40.128.130 929 1254 2.3E-63 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0763 f6fc0f19ce14ef561ff9f94da7db0681 1254 SUPERFAMILY SSF103515 937 1254 3.4E-39 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0763 f6fc0f19ce14ef561ff9f94da7db0681 1254 SUPERFAMILY SSF51126 401 920 3.14E-33 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_0763 f6fc0f19ce14ef561ff9f94da7db0681 1254 Gene3D G3DSA:2.160.20.20 739 922 7.4E-37 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_0763 f6fc0f19ce14ef561ff9f94da7db0681 1254 Pfam PF03797 Autotransporter beta-domain 978 1230 2.4E-34 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0763 f6fc0f19ce14ef561ff9f94da7db0681 1254 SMART SM00869 975 1239 1.1E-34 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0763 f6fc0f19ce14ef561ff9f94da7db0681 1254 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 807 1254 1.3E-78 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 39 441 2.2E-225 T 12-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 PIRSF PIRSF000521 55 195 2.2E-7 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 PIRSF PIRSF000521 211 440 9.3E-38 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 Hamap MF_01173 Succinylornithine transaminase [astC]. 35 446 76.525 T 12-10-2018 IPR026330 Succinylornithine transaminase GO:0006527|GO:0006593|GO:0043825 KEGG: 00330+2.6.1.81 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 47 440 70.391 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 Gene3D G3DSA:3.40.640.10 91 342 7.5E-153 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 Pfam PF00202 Aminotransferase class-III 56 433 2.3E-123 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 260 297 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 SUPERFAMILY SSF53383 48 434 4.95E-124 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 Gene3D G3DSA:3.90.1150.10 56 430 7.5E-153 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2229 5a5e9cb421dd698aa69070c5391e74ee 446 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 47 435 3.0E-156 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 Pfam PF04545 Sigma-70, region 4 185 234 2.7E-17 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 Pfam PF04539 Sigma-70 region 3 97 163 7.6E-13 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 SUPERFAMILY SSF88659 90 162 4.19E-14 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 239 62.193 T 12-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 Pfam PF04542 Sigma-70 region 2 16 88 2.7E-16 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 SUPERFAMILY SSF88946 5 88 2.2E-23 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 PIRSF PIRSF000770 3 240 3.6E-40 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 Gene3D G3DSA:1.10.1740.10 4 85 4.3E-27 T 12-10-2018 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 Gene3D G3DSA:1.20.140.160 87 239 5.4E-45 T 12-10-2018 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 236 8.5E-84 T 12-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 236 2.3E-32 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 43 56 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 PRINTS PR00046 Major sigma-70 factor signature 221 232 1.6E-13 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 PRINTS PR00046 Major sigma-70 factor signature 43 56 1.6E-13 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 PRINTS PR00046 Major sigma-70 factor signature 67 75 1.6E-13 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 PRINTS PR00046 Major sigma-70 factor signature 189 201 1.6E-13 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 PRINTS PR00046 Major sigma-70 factor signature 206 221 1.6E-13 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_2380 75c3068bd574fa8fc1e39afa4cb0d7f3 240 SUPERFAMILY SSF88659 150 238 2.62E-21 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 Pfam PF02080 TrkA-C domain 293 359 1.3E-8 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 Pfam PF02080 TrkA-C domain 211 272 9.0E-7 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 1.3E-49 T 12-10-2018 IPR006512 YidE/YbjL duplication YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 2.9E-44 T 12-10-2018 IPR006512 YidE/YbjL duplication YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 Pfam PF06826 Predicted Permease Membrane Region 10 179 8.6E-47 T 12-10-2018 IPR006512 YidE/YbjL duplication YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 Pfam PF06826 Predicted Permease Membrane Region 374 546 9.0E-46 T 12-10-2018 IPR006512 YidE/YbjL duplication YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 SUPERFAMILY SSF116726 206 271 1.7E-9 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 Gene3D G3DSA:3.30.70.1450 199 274 2.3E-8 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 552 55.297 T 12-10-2018 IPR023018 Transport protein YidE, putative YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 Gene3D G3DSA:3.30.70.1450 288 365 2.6E-10 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_0013 7af750baa3628c306fce7810c3a3e5b6 552 SUPERFAMILY SSF116726 272 358 3.66E-12 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 Gene3D G3DSA:1.10.10.10 124 230 1.9E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 Pfam PF00072 Response regulator receiver domain 4 112 1.3E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 SUPERFAMILY SSF46894 124 222 1.81E-28 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 SMART SM00862 146 221 3.5E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 6.8E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 6.6E-90 T 12-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 SUPERFAMILY SSF52172 1 119 3.56E-37 T 12-10-2018 IPR011006 CheY-like superfamily YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 SMART SM00448 1 111 1.2E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2192 e598aa7110f4ddc9563f1065273ad8c5 230 Gene3D G3DSA:3.40.50.2300 1 121 8.2E-37 T 12-10-2018 YPK_2011 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 SMART SM00900 100 192 8.5E-35 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 YPK_2011 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 PIRSF PIRSF006091 1 203 1.2E-71 T 12-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 YPK_2011 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 193 1.3E-67 T 12-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 YPK_2011 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 194 26.87 T 12-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 YPK_2011 44c1b2f7be5aa9a34d928dd3a9d6c40e 209 Pfam PF04205 FMN-binding domain 100 189 1.1E-17 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 YPK_2924 b4f0105ad7b8fc23b5646c6619ad2747 307 Hamap MF_00973 Gluconeogenesis factor. 8 300 31.733 T 12-10-2018 IPR010119 Gluconeogenesis factor YPK_2924 b4f0105ad7b8fc23b5646c6619ad2747 307 Gene3D G3DSA:3.40.50.12300 9 302 5.7E-76 T 12-10-2018 IPR038136 Gluconeogenesis factor superfamily YPK_2924 b4f0105ad7b8fc23b5646c6619ad2747 307 Pfam PF01933 Uncharacterised protein family UPF0052 12 292 5.1E-73 T 12-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YPK_2924 b4f0105ad7b8fc23b5646c6619ad2747 307 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 261 3.0E-94 T 12-10-2018 IPR010119 Gluconeogenesis factor YPK_2924 b4f0105ad7b8fc23b5646c6619ad2747 307 SUPERFAMILY SSF142338 11 295 2.75E-80 T 12-10-2018 YPK_1263 ca86527380c5e7fecb45e9dd5147def0 310 SUPERFAMILY SSF53850 85 310 2.28E-82 T 12-10-2018 YPK_1263 ca86527380c5e7fecb45e9dd5147def0 310 Pfam PF14503 YhfZ C-terminal domain 87 310 2.4E-80 T 12-10-2018 IPR032791 Uncharacterised protein YhfZ, C-terminal domain YPK_1263 ca86527380c5e7fecb45e9dd5147def0 310 SUPERFAMILY SSF46785 36 93 1.22E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1263 ca86527380c5e7fecb45e9dd5147def0 310 Gene3D G3DSA:3.40.190.10 178 267 1.7E-65 T 12-10-2018 YPK_1263 ca86527380c5e7fecb45e9dd5147def0 310 Gene3D G3DSA:1.10.10.10 30 88 2.1E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1263 ca86527380c5e7fecb45e9dd5147def0 310 Gene3D G3DSA:3.40.190.10 102 310 1.7E-65 T 12-10-2018 YPK_1263 ca86527380c5e7fecb45e9dd5147def0 310 Pfam PF14502 Helix-turn-helix domain 36 81 3.0E-21 T 12-10-2018 YPK_1860 0eb4c69663ccc909a2a47ab988a6459b 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.1E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1860 0eb4c69663ccc909a2a47ab988a6459b 310 Gene3D G3DSA:3.40.190.10 108 286 1.9E-13 T 12-10-2018 YPK_1860 0eb4c69663ccc909a2a47ab988a6459b 310 Gene3D G3DSA:3.40.190.10 168 264 1.9E-13 T 12-10-2018 YPK_1860 0eb4c69663ccc909a2a47ab988a6459b 310 SUPERFAMILY SSF53850 89 292 2.48E-31 T 12-10-2018 YPK_1860 0eb4c69663ccc909a2a47ab988a6459b 310 Pfam PF03466 LysR substrate binding domain 88 291 1.4E-27 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_1860 0eb4c69663ccc909a2a47ab988a6459b 310 SUPERFAMILY SSF46785 7 88 2.6E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1860 0eb4c69663ccc909a2a47ab988a6459b 310 Gene3D G3DSA:1.10.10.10 4 89 8.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3109 0dd870255039b4be0553e410737eec21 81 Gene3D G3DSA:3.30.910.10 2 81 9.0E-27 T 12-10-2018 IPR036687 DinI-like superfamily YPK_3109 0dd870255039b4be0553e410737eec21 81 Pfam PF06183 DinI-like family 17 79 6.9E-23 T 12-10-2018 IPR010391 DNA damage-inducible protein DinI-like YPK_3109 0dd870255039b4be0553e410737eec21 81 SUPERFAMILY SSF54857 2 80 1.7E-20 T 12-10-2018 IPR036687 DinI-like superfamily YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 SUPERFAMILY SSF48013 6 149 4.91E-36 T 12-10-2018 IPR035926 NusB-like superfamily YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 Gene3D G3DSA:3.30.70.1170 173 230 3.6E-26 T 12-10-2018 YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 8 429 2.9E-174 T 12-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 Gene3D G3DSA:1.10.287.730 146 172 7.5E-15 T 12-10-2018 YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 426 9.4E-77 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 12-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 2.9E-31 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 2.9E-31 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 2.9E-31 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 411 428 2.9E-31 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 2.9E-31 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 SUPERFAMILY SSF53335 142 429 8.29E-79 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 Gene3D G3DSA:3.40.50.150 231 429 1.2E-72 T 12-10-2018 YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 Gene3D G3DSA:1.10.940.10 1 145 1.2E-47 T 12-10-2018 IPR035926 NusB-like superfamily YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 Pfam PF01029 NusB family 6 127 4.6E-25 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 YPK_0314 2c9c6315e1c5cb203e02475cfb37b0ab 429 Hamap MF_01856 Ribosomal RNA small subunit methyltransferase B [rsmB]. 1 429 70.041 T 12-10-2018 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae GO:0008649 YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 Gene3D G3DSA:2.120.10.30 165 430 1.3E-115 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 SUPERFAMILY SSF69304 155 428 9.15E-58 T 12-10-2018 YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 Gene3D G3DSA:3.40.50.10070 19 164 6.6E-54 T 12-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 427 2.9E-160 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF07676 WD40-like Beta Propeller Repeat 377 398 0.018 T 12-10-2018 IPR011659 WD40-like Beta Propeller YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF07676 WD40-like Beta Propeller Repeat 237 272 1.9E-9 T 12-10-2018 IPR011659 WD40-like Beta Propeller YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF07676 WD40-like Beta Propeller Repeat 199 223 2.0E-5 T 12-10-2018 IPR011659 WD40-like Beta Propeller YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF07676 WD40-like Beta Propeller Repeat 282 315 9.3E-10 T 12-10-2018 IPR011659 WD40-like Beta Propeller YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 4 426 49.944 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 Pfam PF04052 TolB amino-terminal domain 23 122 1.7E-32 T 12-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 YPK_2956 2255c01ecde5a06234959dd5985acf4f 430 SUPERFAMILY SSF52964 28 161 1.12E-40 T 12-10-2018 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 PIRSF PIRSF000097 1 116 3.6E-38 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 PIRSF PIRSF000097 110 270 4.3E-40 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 SUPERFAMILY SSF51430 2 262 7.46E-89 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 Pfam PF00248 Aldo/keto reductase family 15 257 3.8E-48 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 PRINTS PR00069 Aldo-keto reductase signature 154 183 8.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 PRINTS PR00069 Aldo-keto reductase signature 35 59 8.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 PRINTS PR00069 Aldo-keto reductase signature 120 137 8.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 PRINTS PR00069 Aldo-keto reductase signature 91 109 8.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 PRINTS PR00069 Aldo-keto reductase signature 193 217 8.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_3075 ceb856ea59c1551be7db947514fe0cff 283 Gene3D G3DSA:3.20.20.100 1 283 8.5E-128 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_4036 b9d105ad27256075e90badec73548846 428 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPK_4036 b9d105ad27256075e90badec73548846 428 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.548 T 12-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 YPK_4036 b9d105ad27256075e90badec73548846 428 SMART SM00490 270 351 4.5E-30 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_4036 b9d105ad27256075e90badec73548846 428 Pfam PF00271 Helicase conserved C-terminal domain 243 351 2.4E-28 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_4036 b9d105ad27256075e90badec73548846 428 Gene3D G3DSA:3.40.50.300 2 222 6.6E-68 T 12-10-2018 YPK_4036 b9d105ad27256075e90badec73548846 428 Gene3D G3DSA:3.40.50.300 227 393 1.5E-44 T 12-10-2018 YPK_4036 b9d105ad27256075e90badec73548846 428 Pfam PF00270 DEAD/DEAH box helicase 33 206 5.9E-45 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_4036 b9d105ad27256075e90badec73548846 428 SMART SM00487 28 234 1.1E-50 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_4036 b9d105ad27256075e90badec73548846 428 SUPERFAMILY SSF52540 84 363 9.86E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3239 dbe77d28e7261f51f9ee822e3648e8fd 492 TIGRFAM TIGR00901 2A0125: AmpG-like permease 25 363 4.0E-117 T 12-10-2018 YPK_3239 dbe77d28e7261f51f9ee822e3648e8fd 492 Gene3D G3DSA:1.20.1250.20 4 197 2.8E-17 T 12-10-2018 YPK_3239 dbe77d28e7261f51f9ee822e3648e8fd 492 Gene3D G3DSA:1.20.1250.20 213 418 1.9E-14 T 12-10-2018 YPK_3239 dbe77d28e7261f51f9ee822e3648e8fd 492 SUPERFAMILY SSF103473 6 407 6.28E-46 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3239 dbe77d28e7261f51f9ee822e3648e8fd 492 Pfam PF07690 Major Facilitator Superfamily 18 366 2.4E-31 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0758 8f27c859100f8e04f20dde8a7f907755 585 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0758 8f27c859100f8e04f20dde8a7f907755 585 SMART SM00382 358 556 4.9E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0758 8f27c859100f8e04f20dde8a7f907755 585 Gene3D G3DSA:3.40.50.300 325 580 1.5E-79 T 12-10-2018 YPK_0758 8f27c859100f8e04f20dde8a7f907755 585 SUPERFAMILY SSF52540 325 572 1.41E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0758 8f27c859100f8e04f20dde8a7f907755 585 SUPERFAMILY SSF90123 21 318 6.41E-44 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_0758 8f27c859100f8e04f20dde8a7f907755 585 Pfam PF00005 ABC transporter 350 502 9.9E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0758 8f27c859100f8e04f20dde8a7f907755 585 Pfam PF00664 ABC transporter transmembrane region 37 281 2.7E-14 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_0758 8f27c859100f8e04f20dde8a7f907755 585 Gene3D G3DSA:1.20.1560.10 7 319 1.2E-36 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Gene3D G3DSA:2.40.50.140 317 390 1.7E-34 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Gene3D G3DSA:3.30.470.30 70 253 1.5E-102 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 SMART SM00278 480 499 0.79 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YPK_1432 2a1119f289ab483464b667124eb084bd 670 SMART SM00278 512 531 200.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YPK_1432 2a1119f289ab483464b667124eb084bd 670 SMART SM00278 446 465 17.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YPK_1432 2a1119f289ab483464b667124eb084bd 670 SMART SM00278 544 563 38.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 1.8E-36 T 12-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Gene3D G3DSA:1.10.150.20 506 580 1.2E-29 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 318 7.8E-138 T 12-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Gene3D G3DSA:1.10.150.20 432 505 1.9E-30 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Gene3D G3DSA:1.10.287.610 1 69 1.3E-30 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Hamap MF_01588 DNA ligase [ligA]. 2 668 54.277 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Gene3D G3DSA:2.20.70.80 391 431 5.5E-21 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 SMART SM00292 594 669 2.1E-12 T 12-10-2018 IPR001357 BRCT domain YPK_1432 2a1119f289ab483464b667124eb084bd 670 SUPERFAMILY SSF52113 595 668 9.0E-19 T 12-10-2018 IPR036420 BRCT domain superfamily YPK_1432 2a1119f289ab483464b667124eb084bd 670 PIRSF PIRSF001604 1 670 3.6E-261 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 595 667 4.2E-13 T 12-10-2018 IPR001357 BRCT domain YPK_1432 2a1119f289ab483464b667124eb084bd 670 Gene3D G3DSA:3.40.50.10190 581 669 3.1E-26 T 12-10-2018 IPR036420 BRCT domain superfamily YPK_1432 2a1119f289ab483464b667124eb084bd 670 SUPERFAMILY SSF50249 318 400 1.88E-29 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1432 2a1119f289ab483464b667124eb084bd 670 Pfam PF14520 Helix-hairpin-helix domain 446 502 3.2E-6 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 12-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site YPK_1432 2a1119f289ab483464b667124eb084bd 670 SMART SM00532 3 448 3.0E-284 T 12-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 YPK_1432 2a1119f289ab483464b667124eb084bd 670 Gene3D G3DSA:3.30.1490.70 78 316 1.5E-102 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 12-10-2018 IPR018239 NAD-dependent DNA ligase, active site YPK_1432 2a1119f289ab483464b667124eb084bd 670 Pfam PF12826 Helix-hairpin-helix motif 510 573 1.3E-23 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 SUPERFAMILY SSF47781 404 578 1.37E-61 T 12-10-2018 IPR010994 RuvA domain 2-like YPK_1432 2a1119f289ab483464b667124eb084bd 670 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 1.4E-10 T 12-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 YPK_1432 2a1119f289ab483464b667124eb084bd 670 SUPERFAMILY SSF56091 2 316 1.54E-123 T 12-10-2018 YPK_1432 2a1119f289ab483464b667124eb084bd 670 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 664 5.9E-273 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 YPK_1141 4547e5aefec59c01acd344f6eda4f0a9 391 Gene3D G3DSA:1.10.287.70 132 228 3.1E-13 T 12-10-2018 YPK_1141 4547e5aefec59c01acd344f6eda4f0a9 391 Pfam PF07885 Ion channel 141 218 7.0E-11 T 12-10-2018 IPR013099 Potassium channel domain YPK_1141 4547e5aefec59c01acd344f6eda4f0a9 391 SUPERFAMILY SSF51735 239 376 7.56E-21 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1141 4547e5aefec59c01acd344f6eda4f0a9 391 SUPERFAMILY SSF81324 114 262 8.24E-21 T 12-10-2018 YPK_1141 4547e5aefec59c01acd344f6eda4f0a9 391 Pfam PF02254 TrkA-N domain 243 356 2.8E-15 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YPK_1141 4547e5aefec59c01acd344f6eda4f0a9 391 Gene3D G3DSA:3.40.50.720 238 385 1.8E-26 T 12-10-2018 YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 SUPERFAMILY SSF53901 226 422 3.6E-65 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 164 180 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 265 378 5.6E-36 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 SUPERFAMILY SSF53901 4 262 5.01E-71 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 257 9.9E-58 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 Gene3D G3DSA:3.40.47.10 1 265 1.6E-84 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 PIRSF PIRSF000447 1 424 3.8E-162 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 Gene3D G3DSA:3.40.47.10 271 424 9.4E-50 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 420 3.3E-165 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 YPK_2636 4a89deb7e0837345696dba693e6ecaad 424 SMART SM00825 Beta-ketoacyl synthase 6 424 2.2E-14 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 34 590 1.4E-142 T 12-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 412 436 5.6E-35 T 12-10-2018 IPR001775 GspD/PilQ family YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 568 582 5.6E-35 T 12-10-2018 IPR001775 GspD/PilQ family YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 447 457 5.6E-35 T 12-10-2018 IPR001775 GspD/PilQ family YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 347 357 5.6E-35 T 12-10-2018 IPR001775 GspD/PilQ family YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 PRINTS PR00811 Bacterial general secretion pathway protein D signature 545 563 5.6E-35 T 12-10-2018 IPR001775 GspD/PilQ family YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 Gene3D G3DSA:3.30.1370.120 27 190 8.0E-48 T 12-10-2018 IPR038591 NolW-like superfamily YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 Gene3D G3DSA:3.30.1370.120 267 345 3.2E-14 T 12-10-2018 IPR038591 NolW-like superfamily YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 Pfam PF00263 Bacterial type II and III secretion system protein 416 581 3.1E-50 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 526 559 - T 12-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 Pfam PF03958 Bacterial type II/III secretion system short domain 196 265 5.7E-9 T 12-10-2018 IPR005644 NolW-like YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 Pfam PF03958 Bacterial type II/III secretion system short domain 131 191 7.5E-11 T 12-10-2018 IPR005644 NolW-like YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 Pfam PF03958 Bacterial type II/III secretion system short domain 270 347 1.9E-14 T 12-10-2018 IPR005644 NolW-like YPK_1004 b519dfdec3042a9e958b929d13e12af5 640 Gene3D G3DSA:3.30.1370.120 194 262 1.4E-13 T 12-10-2018 IPR038591 NolW-like superfamily YPK_0265 3c16fe8083073a2aa8ed86d6938cf170 182 Gene3D G3DSA:3.40.50.360 6 178 6.6E-51 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_0265 3c16fe8083073a2aa8ed86d6938cf170 182 Pfam PF02525 Flavodoxin-like fold 6 173 4.4E-40 T 12-10-2018 IPR003680 Flavodoxin-like fold YPK_0265 3c16fe8083073a2aa8ed86d6938cf170 182 SUPERFAMILY SSF52218 5 176 3.96E-47 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_0265 3c16fe8083073a2aa8ed86d6938cf170 182 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 1 182 49.544 T 12-10-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 YPK_0835 6ea1bad62ed54791b88197d593f15024 294 Pfam PF00795 Carbon-nitrogen hydrolase 5 268 6.0E-53 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YPK_0835 6ea1bad62ed54791b88197d593f15024 294 SUPERFAMILY SSF56317 1 285 1.96E-81 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_0835 6ea1bad62ed54791b88197d593f15024 294 TIGRFAM TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase 4 285 3.3E-146 T 12-10-2018 IPR017755 N-carbamoylputrescine amidase GO:0006596|GO:0050126 KEGG: 00330+3.5.1.53|MetaCyc: PWY-43 YPK_0835 6ea1bad62ed54791b88197d593f15024 294 Gene3D G3DSA:3.60.110.10 1 293 4.2E-105 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_1907 5cdaa6353253144fa55cb5ca2ffb0724 337 Gene3D G3DSA:1.20.58.340 280 337 1.4E-11 T 12-10-2018 YPK_1907 5cdaa6353253144fa55cb5ca2ffb0724 337 Pfam PF01544 CorA-like Mg2+ transporter protein 49 333 1.5E-63 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 YPK_1907 5cdaa6353253144fa55cb5ca2ffb0724 337 Gene3D G3DSA:1.20.58.340 150 272 2.1E-41 T 12-10-2018 YPK_1907 5cdaa6353253144fa55cb5ca2ffb0724 337 SUPERFAMILY SSF143865 21 269 2.22E-52 T 12-10-2018 YPK_1907 5cdaa6353253144fa55cb5ca2ffb0724 337 SUPERFAMILY SSF144083 273 334 2.75E-13 T 12-10-2018 YPK_1907 5cdaa6353253144fa55cb5ca2ffb0724 337 Gene3D G3DSA:3.30.460.20 9 149 2.5E-43 T 12-10-2018 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 6.1E-41 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 5.5E-137 T 12-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 2.7E-71 T 12-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 Gene3D G3DSA:3.40.50.720 4 326 1.4E-158 T 12-10-2018 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 12-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 PIRSF PIRSF000149 1 331 1.1E-134 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 1.1E-46 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.1E-46 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 1.1E-46 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 1.1E-46 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 1.1E-46 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 SUPERFAMILY SSF51735 3 166 2.48E-69 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2096 c3114959fcab7998e8d9746134c6817c 331 SMART SM00846 3 150 6.0E-98 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 Gene3D G3DSA:3.30.360.10 149 314 1.4E-158 T 12-10-2018 YPK_2096 c3114959fcab7998e8d9746134c6817c 331 SUPERFAMILY SSF55347 149 312 4.17E-81 T 12-10-2018 YPK_3154 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 6.8E-10 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YPK_3154 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 Gene3D G3DSA:3.60.21.10 1 235 1.1E-19 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like YPK_3154 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 127.354 T 12-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 YPK_3154 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 232 7.7E-104 T 12-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 YPK_3154 b12d8bb58a1905cb5d5d3107cdb1d9b4 240 SUPERFAMILY SSF56300 3 238 2.71E-36 T 12-10-2018 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 Gene3D G3DSA:3.90.480.20 17 417 4.8E-90 T 12-10-2018 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 Gene3D G3DSA:3.30.413.10 141 348 4.8E-90 T 12-10-2018 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 80 139 3.0E-13 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 353 417 1.0E-14 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 478 494 - T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 10 571 58.398 T 12-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 SUPERFAMILY SSF55124 346 424 5.4E-22 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 SUPERFAMILY SSF56014 150 344 2.75E-58 T 12-10-2018 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 PRINTS PR00397 Sirohaem Fe-binding site signature 478 496 2.7E-8 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 PRINTS PR00397 Sirohaem Fe-binding site signature 430 448 2.7E-8 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 19 559 8.4E-290 T 12-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 SUPERFAMILY SSF56014 429 561 1.57E-34 T 12-10-2018 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 430 558 0.0055 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 173 329 2.9E-46 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 Gene3D G3DSA:3.30.413.10 426 568 1.4E-35 T 12-10-2018 YPK_3441 e249e43fb2e7ea5eade4d16a99f25727 576 SUPERFAMILY SSF55124 13 142 3.27E-26 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 10 843 25.25 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 SUPERFAMILY SSF48334 270 566 6.15E-90 T 12-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily YPK_3424 fddad324f56b820d9c11ab0903976955 851 Gene3D G3DSA:3.40.1170.10 2 124 3.7E-51 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Gene3D G3DSA:3.40.50.300 570 841 4.0E-101 T 12-10-2018 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Gene3D G3DSA:1.10.1420.10 269 559 1.1E-104 T 12-10-2018 YPK_3424 fddad324f56b820d9c11ab0903976955 851 PIRSF PIRSF037677 3 192 6.2E-27 T 12-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 PIRSF PIRSF037677 200 826 1.3E-123 T 12-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 SMART SM00533 286 591 3.6E-105 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 SUPERFAMILY SSF52540 567 798 1.68E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3424 fddad324f56b820d9c11ab0903976955 851 SUPERFAMILY SSF53150 117 269 8.76E-43 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Pfam PF05188 MutS domain II 131 256 4.5E-34 T 12-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Pfam PF05190 MutS family domain IV 428 517 2.0E-28 T 12-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 SUPERFAMILY SSF55271 5 116 5.75E-42 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Pfam PF01624 MutS domain I 11 122 1.9E-40 T 12-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Pfam PF00488 MutS domain V 610 797 1.1E-88 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Gene3D G3DSA:3.30.420.110 130 265 1.7E-38 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 SMART SM00534 607 794 4.0E-123 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 10 848 0.0 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Pfam PF05192 MutS domain III 272 559 2.4E-38 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 YPK_3424 fddad324f56b820d9c11ab0903976955 851 Gene3D G3DSA:1.10.1420.10 387 503 1.1E-104 T 12-10-2018 YPK_3424 fddad324f56b820d9c11ab0903976955 851 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 688 704 - T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 YPK_3627 7d189e5a9a1698c399aa4989706a70a5 265 PIRSF PIRSF001357 11 261 4.4E-79 T 12-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_3627 7d189e5a9a1698c399aa4989706a70a5 265 Pfam PF01791 DeoC/LacD family aldolase 18 250 1.9E-44 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_3627 7d189e5a9a1698c399aa4989706a70a5 265 SUPERFAMILY SSF51569 13 252 6.8E-80 T 12-10-2018 YPK_3627 7d189e5a9a1698c399aa4989706a70a5 265 SMART SM01133 16 252 1.5E-77 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_3627 7d189e5a9a1698c399aa4989706a70a5 265 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 7 265 52.504 T 12-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 YPK_3627 7d189e5a9a1698c399aa4989706a70a5 265 Gene3D G3DSA:3.20.20.70 7 265 4.0E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3627 7d189e5a9a1698c399aa4989706a70a5 265 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 17 238 1.1E-78 T 12-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 Gene3D G3DSA:3.30.479.20 57 143 1.6E-30 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 Hamap MF_00050 Elongation factor Ts [tsf]. 1 282 80.24 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 12-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 Gene3D G3DSA:1.10.286.20 189 228 6.3E-23 T 12-10-2018 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 SUPERFAMILY SSF54713 56 141 7.63E-22 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 Pfam PF00889 Elongation factor TS 73 265 1.1E-67 T 12-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 Gene3D G3DSA:1.10.8.10 1 56 1.7E-25 T 12-10-2018 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 SUPERFAMILY SSF54713 144 283 3.79E-53 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 SUPERFAMILY SSF46934 4 55 4.68E-18 T 12-10-2018 IPR009060 UBA-like superfamily GO:0005515 YPK_1067 0f19abe77aa2614b06a5aa4fcab3bdac 285 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 284 5.1E-116 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 SUPERFAMILY SSF56784 1 157 1.0E-36 T 12-10-2018 IPR036412 HAD-like superfamily YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 1.1E-63 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 Gene3D G3DSA:3.30.230.40 255 355 1.7E-35 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 SUPERFAMILY SSF54211 252 342 2.28E-31 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 SUPERFAMILY SSF54211 167 251 5.31E-30 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 144 8.2E-44 T 12-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 Gene3D G3DSA:3.30.230.40 163 254 4.6E-34 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 148 9.0E-24 T 12-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 Pfam PF13242 HAD-hyrolase-like 103 146 5.9E-5 T 12-10-2018 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 36.127 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 50.572 T 12-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 Gene3D G3DSA:3.40.50.1000 1 162 1.0E-42 T 12-10-2018 IPR023214 HAD superfamily YPK_2528 cc79d6eac564e29ff9cb18330c8b3f4e 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 2.3E-76 T 12-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 Gene3D G3DSA:1.20.1640.10 110 311 1.2E-15 T 12-10-2018 YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 PRINTS PR01755 Bacterial translocase SecF protein signature 159 173 1.8E-33 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 PRINTS PR01755 Bacterial translocase SecF protein signature 207 225 1.8E-33 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 PRINTS PR01755 Bacterial translocase SecF protein signature 239 254 1.8E-33 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 PRINTS PR01755 Bacterial translocase SecF protein signature 44 59 1.8E-33 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 SUPERFAMILY SSF82866 79 302 3.53E-42 T 12-10-2018 YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 17 302 28.361 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 Pfam PF02355 Protein export membrane protein 117 300 1.9E-71 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 Pfam PF07549 SecD/SecF GG Motif 40 66 1.1E-10 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 45 291 1.6E-88 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 YPK_3261 c14ccfdadd559357e7069621b8ba1e58 322 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 127 288 7.8E-56 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPK_0911 a3a8c98bdb6e7c2c5cd0965f1d53be6b 110 Pfam PF10761 Protein of unknown function (DUF2590) 7 105 3.8E-46 T 12-10-2018 IPR019697 Bacteriophage HP1, Orf28 YPK_1376 4c7b851931abb441dc2ddc55af9b9095 589 Gene3D G3DSA:1.10.3720.10 14 283 6.3E-44 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1376 4c7b851931abb441dc2ddc55af9b9095 589 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 276 1.4E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1376 4c7b851931abb441dc2ddc55af9b9095 589 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 381 577 5.5E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1376 4c7b851931abb441dc2ddc55af9b9095 589 SUPERFAMILY SSF161098 300 586 6.35E-38 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1376 4c7b851931abb441dc2ddc55af9b9095 589 Gene3D G3DSA:1.10.3720.10 343 588 1.5E-28 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1376 4c7b851931abb441dc2ddc55af9b9095 589 SUPERFAMILY SSF161098 5 282 1.78E-45 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 SUPERFAMILY SSF52518 2 180 1.94E-66 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 Gene3D G3DSA:3.40.50.970 1 180 2.3E-72 T 12-10-2018 YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 171 4.8E-60 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 Gene3D G3DSA:3.40.50.1220 190 360 1.5E-60 T 12-10-2018 YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 546 1.8E-49 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 570 9.0E-278 T 12-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 431 450 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 SUPERFAMILY SSF52518 368 572 5.18E-69 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 Gene3D G3DSA:3.40.50.970 364 562 2.2E-67 T 12-10-2018 YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 SUPERFAMILY SSF52467 188 362 3.44E-63 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPK_3531 cfef62c0ce81c9a0114981dd07a6ad96 575 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.0E-45 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YPK_3797 65b49c3b2ade39042c587ef213491509 428 PIRSF PIRSF006809 3 422 1.0E-146 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 YPK_3797 65b49c3b2ade39042c587ef213491509 428 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 2.2E-28 T 12-10-2018 IPR032305 GTP-binding protein, middle domain YPK_3797 65b49c3b2ade39042c587ef213491509 428 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 1.8E-151 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 YPK_3797 65b49c3b2ade39042c587ef213491509 428 Pfam PF01926 50S ribosome-binding GTPase 200 318 8.2E-20 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3797 65b49c3b2ade39042c587ef213491509 428 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 4.9E-30 T 12-10-2018 IPR025121 GTPase HflX, N-terminal YPK_3797 65b49c3b2ade39042c587ef213491509 428 SUPERFAMILY SSF54980 366 422 5.83E-14 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_3797 65b49c3b2ade39042c587ef213491509 428 Gene3D G3DSA:3.40.50.11060 17 138 1.3E-36 T 12-10-2018 YPK_3797 65b49c3b2ade39042c587ef213491509 428 Gene3D G3DSA:3.40.50.300 197 365 1.3E-37 T 12-10-2018 YPK_3797 65b49c3b2ade39042c587ef213491509 428 SUPERFAMILY SSF52540 197 375 1.69E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3797 65b49c3b2ade39042c587ef213491509 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.7E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3797 65b49c3b2ade39042c587ef213491509 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 1.7E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3797 65b49c3b2ade39042c587ef213491509 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 1.7E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_3797 65b49c3b2ade39042c587ef213491509 428 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.508 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 YPK_1054 95ded84fba72e736f936e074e1bb7057 368 SUPERFAMILY SSF53335 185 289 1.77E-11 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_1054 95ded84fba72e736f936e074e1bb7057 368 PIRSF PIRSF028774 2 361 3.6E-195 T 12-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 YPK_1054 95ded84fba72e736f936e074e1bb7057 368 Pfam PF01728 FtsJ-like methyltransferase 187 280 3.2E-7 T 12-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 YPK_1054 95ded84fba72e736f936e074e1bb7057 368 Gene3D G3DSA:3.30.2300.20 81 176 2.3E-38 T 12-10-2018 YPK_1054 95ded84fba72e736f936e074e1bb7057 368 Gene3D G3DSA:3.40.50.150 177 358 1.7E-57 T 12-10-2018 YPK_1054 95ded84fba72e736f936e074e1bb7057 368 Gene3D G3DSA:3.30.70.2810 1 80 1.2E-33 T 12-10-2018 YPK_1054 95ded84fba72e736f936e074e1bb7057 368 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 2 356 85.448 T 12-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 436 455 3.5E-21 T 12-10-2018 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 607 622 3.5E-21 T 12-10-2018 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 643 655 3.5E-21 T 12-10-2018 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 590 605 3.5E-21 T 12-10-2018 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 SUPERFAMILY SSF51621 395 691 1.33E-94 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 590 608 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Gene3D G3DSA:1.10.274.10 138 288 1.0E-35 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 723 860 2.3E-30 T 12-10-2018 IPR002178 PTS EIIA type-2 domain YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Gene3D G3DSA:3.40.930.10 718 861 1.2E-31 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 PRINTS PR00107 Phosphocarrier protein signature 41 56 8.1E-6 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 PRINTS PR00107 Phosphocarrier protein signature 56 73 8.1E-6 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 PRINTS PR00107 Phosphocarrier protein signature 14 30 8.1E-6 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 SUPERFAMILY SSF55594 4 88 3.14E-17 T 12-10-2018 IPR035895 HPr-like superfamily YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 SUPERFAMILY SSF55804 720 859 8.37E-30 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Gene3D G3DSA:3.30.1340.10 3 88 2.0E-13 T 12-10-2018 IPR035895 HPr-like superfamily YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Pfam PF00381 PTS HPr component phosphorylation site 5 85 2.5E-13 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Pfam PF05524 PEP-utilising enzyme, N-terminal 122 268 1.5E-10 T 12-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 327 338 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Gene3D G3DSA:3.50.30.10 125 371 1.0E-35 T 12-10-2018 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 196 708 6.5E-137 T 12-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 SUPERFAMILY SSF52009 267 385 2.35E-21 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Pfam PF00391 PEP-utilising enzyme, mobile domain 296 368 2.0E-13 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 394 684 6.5E-101 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 Gene3D G3DSA:3.20.20.60 378 712 2.0E-102 T 12-10-2018 YPK_3657 46fc43da95c2defd6925f4ae94daadd3 864 SUPERFAMILY SSF47831 203 285 8.37E-14 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YPK_2529 a2fa9a1ce4429c35711945859813a95f 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 8.6E-70 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 YPK_2529 a2fa9a1ce4429c35711945859813a95f 196 SUPERFAMILY SSF52317 3 195 4.28E-53 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_2529 a2fa9a1ce4429c35711945859813a95f 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 9.7E-5 T 12-10-2018 YPK_2529 a2fa9a1ce4429c35711945859813a95f 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 9.7E-5 T 12-10-2018 YPK_2529 a2fa9a1ce4429c35711945859813a95f 196 PIRSF PIRSF000495 1 196 2.1E-63 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 YPK_2529 a2fa9a1ce4429c35711945859813a95f 196 Pfam PF00117 Glutamine amidotransferase class-I 40 194 6.0E-19 T 12-10-2018 IPR017926 Glutamine amidotransferase YPK_2529 a2fa9a1ce4429c35711945859813a95f 196 Gene3D G3DSA:3.40.50.880 1 196 1.2E-67 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_2529 a2fa9a1ce4429c35711945859813a95f 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 33.404 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 YPK_1414 3e89edfc525663d00c1b05a6fd3a6ea3 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 4.8E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1414 3e89edfc525663d00c1b05a6fd3a6ea3 235 SUPERFAMILY SSF52172 1 122 1.85E-42 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1414 3e89edfc525663d00c1b05a6fd3a6ea3 235 Gene3D G3DSA:3.40.50.2300 1 128 4.5E-39 T 12-10-2018 YPK_1414 3e89edfc525663d00c1b05a6fd3a6ea3 235 Pfam PF00072 Response regulator receiver domain 3 113 1.6E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1414 3e89edfc525663d00c1b05a6fd3a6ea3 235 SMART SM00448 1 112 7.3E-46 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1414 3e89edfc525663d00c1b05a6fd3a6ea3 235 SUPERFAMILY SSF46894 128 226 4.54E-27 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1414 3e89edfc525663d00c1b05a6fd3a6ea3 235 Gene3D G3DSA:1.10.10.10 129 231 5.6E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1414 3e89edfc525663d00c1b05a6fd3a6ea3 235 SMART SM00862 150 226 8.9E-25 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 SUPERFAMILY SSF53901 262 386 2.98E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 60.34 T 12-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 1.5E-81 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 Gene3D G3DSA:3.40.47.10 134 381 9.1E-152 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 SUPERFAMILY SSF53901 1 258 1.07E-78 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 6.2E-49 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 Gene3D G3DSA:3.40.47.10 4 267 9.1E-152 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 6.8E-141 T 12-10-2018 IPR002155 Thiolase GO:0016747 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 386 1.7E-224 T 12-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 YPK_3934 c0c7890d8dd735cf219f4050491bb19c 387 PIRSF PIRSF000429 1 387 3.5E-130 T 12-10-2018 IPR002155 Thiolase GO:0016747 YPK_2327 b285b41f5d7866e6bb0a29cd39509b07 587 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 11 64 2.0E-21 T 12-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 YPK_2327 b285b41f5d7866e6bb0a29cd39509b07 587 Gene3D G3DSA:3.40.50.300 85 303 4.6E-21 T 12-10-2018 YPK_2327 b285b41f5d7866e6bb0a29cd39509b07 587 Pfam PF03237 Terminase-like family 164 384 3.1E-50 T 12-10-2018 IPR004921 Terminase large subunit, T4likevirus-type YPK_2327 b285b41f5d7866e6bb0a29cd39509b07 587 Pfam PF17289 Terminase RNaseH-like domain 412 570 1.4E-36 T 12-10-2018 IPR035421 Terminase, large subunit gp17-like YPK_2327 b285b41f5d7866e6bb0a29cd39509b07 587 Gene3D G3DSA:3.30.420.240 386 570 8.9E-10 T 12-10-2018 YPK_0262 c6e8de4895604eb68a014cf3a56b33c6 326 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 82 302 5.6E-13 T 12-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 YPK_0262 c6e8de4895604eb68a014cf3a56b33c6 326 Gene3D G3DSA:3.40.50.2000 1 164 3.6E-20 T 12-10-2018 YPK_0262 c6e8de4895604eb68a014cf3a56b33c6 326 Gene3D G3DSA:3.40.50.2000 170 326 1.0E-22 T 12-10-2018 YPK_0262 c6e8de4895604eb68a014cf3a56b33c6 326 SUPERFAMILY SSF53756 2 324 1.57E-56 T 12-10-2018 YPK_0463 ed7a5dba56b414206db0c244e7e24e32 325 SMART SM00829 11 313 7.6E-4 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YPK_0463 ed7a5dba56b414206db0c244e7e24e32 325 Gene3D G3DSA:3.40.50.720 125 292 1.2E-125 T 12-10-2018 YPK_0463 ed7a5dba56b414206db0c244e7e24e32 325 SUPERFAMILY SSF50129 1 145 2.2E-46 T 12-10-2018 IPR011032 GroES-like superfamily YPK_0463 ed7a5dba56b414206db0c244e7e24e32 325 Pfam PF00107 Zinc-binding dehydrogenase 158 269 8.6E-16 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YPK_0463 ed7a5dba56b414206db0c244e7e24e32 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 1.2E-4 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YPK_0463 ed7a5dba56b414206db0c244e7e24e32 325 SUPERFAMILY SSF51735 116 288 3.88E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0463 ed7a5dba56b414206db0c244e7e24e32 325 Gene3D G3DSA:3.90.180.10 16 323 1.2E-125 T 12-10-2018 YPK_0463 ed7a5dba56b414206db0c244e7e24e32 325 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 324 2.0E-136 T 12-10-2018 IPR014188 Acrylyl-CoA reductase AcuI YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 269 284 2.8E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 299 320 2.8E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 225 242 2.8E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 2.8E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 205 223 2.8E-36 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 SUPERFAMILY SSF160544 248 352 5.62E-37 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 351 4.3E-107 T 12-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 Gene3D G3DSA:3.40.1690.10 214 355 4.4E-54 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_0703 a57944d6a1f83cc82ebd7f1a265d0d76 377 Pfam PF01312 FlhB HrpN YscU SpaS Family 6 344 4.1E-109 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_2829 5527cd9e162f682bb0dc093cc3a7faf1 240 Gene3D G3DSA:1.10.260.40 1 91 5.4E-36 T 12-10-2018 YPK_2829 5527cd9e162f682bb0dc093cc3a7faf1 240 Pfam PF01381 Helix-turn-helix 25 73 3.7E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_2829 5527cd9e162f682bb0dc093cc3a7faf1 240 SUPERFAMILY SSF51306 109 233 1.12E-26 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily YPK_2829 5527cd9e162f682bb0dc093cc3a7faf1 240 SMART SM00530 16 75 3.4E-8 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_2829 5527cd9e162f682bb0dc093cc3a7faf1 240 Gene3D G3DSA:2.10.109.10 106 239 3.3E-50 T 12-10-2018 YPK_2829 5527cd9e162f682bb0dc093cc3a7faf1 240 Pfam PF00717 Peptidase S24-like 152 223 7.8E-14 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_2829 5527cd9e162f682bb0dc093cc3a7faf1 240 SUPERFAMILY SSF47413 1 92 2.65E-21 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_3317 843081a2f0e009a4be64858c4b49c40f 407 PIRSF PIRSF031134 1 400 1.7E-168 T 12-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 YPK_3317 843081a2f0e009a4be64858c4b49c40f 407 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 407 212.715 T 12-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 YPK_3317 843081a2f0e009a4be64858c4b49c40f 407 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 33 396 6.7E-159 T 12-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 YPK_3317 843081a2f0e009a4be64858c4b49c40f 407 Gene3D G3DSA:3.30.200.20 1 115 3.3E-39 T 12-10-2018 YPK_3317 843081a2f0e009a4be64858c4b49c40f 407 SUPERFAMILY SSF56112 1 396 1.14E-90 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily YPK_3317 843081a2f0e009a4be64858c4b49c40f 407 Gene3D G3DSA:3.90.1200.10 116 398 1.3E-100 T 12-10-2018 YPK_3317 843081a2f0e009a4be64858c4b49c40f 407 Pfam PF01636 Phosphotransferase enzyme family 33 263 2.4E-14 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase YPK_0494 276d7581d028ca931bdc224e95d24e05 553 Gene3D G3DSA:3.20.20.80 2 111 1.7E-49 T 12-10-2018 YPK_0494 276d7581d028ca931bdc224e95d24e05 553 SUPERFAMILY SSF51445 5 472 1.31E-151 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0494 276d7581d028ca931bdc224e95d24e05 553 SUPERFAMILY SSF51011 475 551 1.5E-17 T 12-10-2018 YPK_0494 276d7581d028ca931bdc224e95d24e05 553 Gene3D G3DSA:3.90.400.10 112 171 5.9E-27 T 12-10-2018 YPK_0494 276d7581d028ca931bdc224e95d24e05 553 SMART SM00642 15 414 2.4E-154 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_0494 276d7581d028ca931bdc224e95d24e05 553 Gene3D G3DSA:3.20.20.80 172 475 6.5E-108 T 12-10-2018 YPK_0494 276d7581d028ca931bdc224e95d24e05 553 Pfam PF00128 Alpha amylase, catalytic domain 30 372 2.9E-122 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_0494 276d7581d028ca931bdc224e95d24e05 553 Pfam PF11941 Domain of unknown function (DUF3459) 459 534 1.0E-4 T 12-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) YPK_0494 276d7581d028ca931bdc224e95d24e05 553 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 7 550 8.4E-249 T 12-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 YPK_0494 276d7581d028ca931bdc224e95d24e05 553 Gene3D G3DSA:2.60.40.1180 476 550 1.7E-15 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta YPK_1168 57e5b636b31137abda7d8fcebb445173 316 SUPERFAMILY SSF50891 173 288 1.14E-11 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily YPK_1168 57e5b636b31137abda7d8fcebb445173 316 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 307 1.0E-118 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B YPK_1168 57e5b636b31137abda7d8fcebb445173 316 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 24 281 5.2E-90 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B YPK_1168 57e5b636b31137abda7d8fcebb445173 316 SMART SM00797 23 298 1.1E-145 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B YPK_1168 57e5b636b31137abda7d8fcebb445173 316 Gene3D G3DSA:2.40.100.10 170 309 1.2E-54 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 Gene3D G3DSA:3.20.20.100 1 275 2.1E-117 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 123 140 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 PIRSF PIRSF000097 1 270 7.0E-92 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 Pfam PF00248 Aldo/keto reductase family 18 260 7.3E-48 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 PRINTS PR00069 Aldo-keto reductase signature 196 220 1.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 PRINTS PR00069 Aldo-keto reductase signature 123 140 1.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 PRINTS PR00069 Aldo-keto reductase signature 157 186 1.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 PRINTS PR00069 Aldo-keto reductase signature 91 109 1.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 PRINTS PR00069 Aldo-keto reductase signature 37 61 1.6E-45 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_0667 1b66080192eec31bf79a5abb3e226a0d 277 SUPERFAMILY SSF51430 1 267 1.83E-87 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_0862 f848318234109885c5c36c9ff7efde8d 192 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 18 165 7.9E-11 T 12-10-2018 IPR011978 Uncharacterised protein family UPF0149 YPK_0862 f848318234109885c5c36c9ff7efde8d 192 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 6 190 37.498 T 12-10-2018 IPR011978 Uncharacterised protein family UPF0149 YPK_0862 f848318234109885c5c36c9ff7efde8d 192 Pfam PF03695 Uncharacterised protein family (UPF0149) 14 177 7.3E-36 T 12-10-2018 IPR011978 Uncharacterised protein family UPF0149 YPK_0862 f848318234109885c5c36c9ff7efde8d 192 Gene3D G3DSA:1.20.120.740 5 192 1.8E-57 T 12-10-2018 YPK_0862 f848318234109885c5c36c9ff7efde8d 192 SUPERFAMILY SSF101327 8 176 4.97E-51 T 12-10-2018 IPR036255 YgfB-like superfamily YPK_1529 06f0710fd35419f35318b3bd8f532c4c 293 PIRSF PIRSF001430 30 281 5.1E-77 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1529 06f0710fd35419f35318b3bd8f532c4c 293 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 31 267 2.1E-75 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1529 06f0710fd35419f35318b3bd8f532c4c 293 SUPERFAMILY SSF55120 31 286 1.14E-90 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1529 06f0710fd35419f35318b3bd8f532c4c 293 Pfam PF01416 tRNA pseudouridine synthase 171 273 1.5E-28 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1529 06f0710fd35419f35318b3bd8f532c4c 293 Pfam PF01416 tRNA pseudouridine synthase 37 131 2.9E-10 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1529 06f0710fd35419f35318b3bd8f532c4c 293 Gene3D G3DSA:3.30.70.660 134 271 1.2E-49 T 12-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 YPK_1529 06f0710fd35419f35318b3bd8f532c4c 293 Gene3D G3DSA:3.30.70.580 28 133 7.2E-40 T 12-10-2018 YPK_1529 06f0710fd35419f35318b3bd8f532c4c 293 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 30 272 34.516 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_4033 b18deb4cbc75b886cf6cd7abd91020df 360 Pfam PF00953 Glycosyl transferase family 4 70 227 5.2E-27 T 12-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 YPK_4033 b18deb4cbc75b886cf6cd7abd91020df 360 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 3 345 1.5E-164 T 12-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 YPK_4033 b18deb4cbc75b886cf6cd7abd91020df 360 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 4 348 29.142 T 12-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 YPK_3787 f4c2c050243932dd6271645fd1f134dd 103 Pfam PF07338 Protein of unknown function (DUF1471) 48 103 1.3E-16 T 12-10-2018 IPR010854 Domain of unknown function DUF1471 YPK_3787 f4c2c050243932dd6271645fd1f134dd 103 Gene3D G3DSA:3.30.1660.10 35 103 6.7E-14 T 12-10-2018 IPR025543 Dodecin-like YPK_3787 f4c2c050243932dd6271645fd1f134dd 103 SUPERFAMILY SSF159871 5 103 1.11E-20 T 12-10-2018 IPR036275 YdgH-like superfamily YPK_0839 69487175222925c1e6fd2538458f23a8 243 SUPERFAMILY SSF88697 2 70 1.71E-17 T 12-10-2018 IPR015947 PUA-like superfamily YPK_0839 69487175222925c1e6fd2538458f23a8 243 SUPERFAMILY SSF75217 75 242 1.62E-50 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases YPK_0839 69487175222925c1e6fd2538458f23a8 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 6.7E-87 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 YPK_0839 69487175222925c1e6fd2538458f23a8 243 Gene3D G3DSA:2.40.240.20 1 73 2.1E-21 T 12-10-2018 YPK_0839 69487175222925c1e6fd2538458f23a8 243 PIRSF PIRSF015601 2 242 1.2E-53 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 YPK_0839 69487175222925c1e6fd2538458f23a8 243 Gene3D G3DSA:3.40.1280.10 74 243 2.9E-63 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_0839 69487175222925c1e6fd2538458f23a8 243 Pfam PF04452 RNA methyltransferase 19 236 4.0E-73 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 YPK_4164 2af7a212893890961597096267174389 111 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 58 104 2.8E-6 T 12-10-2018 IPR010260 DNA-binding transcriptional activator AlpA YPK_4164 2af7a212893890961597096267174389 111 SUPERFAMILY SSF46955 58 105 1.17E-6 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 Pfam PF00005 ABC transporter 285 439 4.2E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 Pfam PF00005 ABC transporter 32 181 3.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 SUPERFAMILY SSF52540 262 492 2.25E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 SMART SM00382 294 488 2.5E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 SMART SM00382 41 228 4.8E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 SUPERFAMILY SSF52540 15 239 2.39E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 Gene3D G3DSA:3.40.50.300 268 506 8.4E-44 T 12-10-2018 YPK_1961 c9dc8e45d8758120c7d7e3e6ba783345 512 Gene3D G3DSA:3.40.50.300 1 245 4.4E-55 T 12-10-2018 YPK_2024 51f1cd4232e06ff77f53f0f4657a8d38 245 SMART SM00934 16 237 7.7E-103 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_2024 51f1cd4232e06ff77f53f0f4657a8d38 245 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 18 237 9.9E-57 T 12-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_2024 51f1cd4232e06ff77f53f0f4657a8d38 245 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 68 81 - T 12-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_2024 51f1cd4232e06ff77f53f0f4657a8d38 245 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 14 242 39.801 T 12-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_2024 51f1cd4232e06ff77f53f0f4657a8d38 245 Gene3D G3DSA:3.20.20.70 2 245 1.4E-88 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2024 51f1cd4232e06ff77f53f0f4657a8d38 245 SUPERFAMILY SSF51366 14 240 4.44E-81 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YPK_2024 51f1cd4232e06ff77f53f0f4657a8d38 245 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 15 237 8.4E-54 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_2943 6a2a39e2839df237f424b1713e3e6a60 338 Gene3D G3DSA:3.90.25.10 182 328 1.8E-140 T 12-10-2018 YPK_2943 6a2a39e2839df237f424b1713e3e6a60 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 335 8.5E-143 T 12-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 YPK_2943 6a2a39e2839df237f424b1713e3e6a60 338 SUPERFAMILY SSF51735 1 336 1.03E-98 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2943 6a2a39e2839df237f424b1713e3e6a60 338 Gene3D G3DSA:3.40.50.720 3 262 1.8E-140 T 12-10-2018 YPK_2943 6a2a39e2839df237f424b1713e3e6a60 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 1.7E-63 T 12-10-2018 IPR016040 NAD(P)-binding domain YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 SUPERFAMILY SSF116726 320 392 8.11E-18 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 Gene3D G3DSA:3.30.70.1450 323 396 1.2E-16 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 12-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 SUPERFAMILY SSF116726 232 289 9.94E-10 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 Pfam PF03600 Citrate transporter 430 607 3.2E-20 T 12-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 Pfam PF03600 Citrate transporter 16 197 7.2E-37 T 12-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 Gene3D G3DSA:3.30.70.1450 229 306 5.9E-13 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 Pfam PF02080 TrkA-C domain 326 392 2.4E-12 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_1555 083ce57bd3b0465d395575bb79f4f405 610 Pfam PF02080 TrkA-C domain 231 297 1.6E-15 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 PIRSF PIRSF001553 1 290 4.7E-134 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 SUPERFAMILY SSF52210 123 287 4.97E-56 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 Gene3D G3DSA:3.40.50.261 124 289 6.3E-76 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 SUPERFAMILY SSF51735 1 122 3.38E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.1E-40 T 12-10-2018 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.1E-40 T 12-10-2018 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.1E-40 T 12-10-2018 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.1E-40 T 12-10-2018 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 Gene3D G3DSA:3.40.50.720 2 123 8.2E-52 T 12-10-2018 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 12-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 SMART SM00881 4 100 6.1E-39 T 12-10-2018 IPR003781 CoA-binding GO:0048037 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.163 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 5.4E-146 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 Pfam PF00549 CoA-ligase 151 271 9.4E-21 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 12-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site YPK_2965 9a12b959891f482fcbbd1ad202f37751 290 Pfam PF02629 CoA binding domain 6 99 1.0E-32 T 12-10-2018 IPR003781 CoA-binding GO:0048037 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 SUPERFAMILY SSF53927 4 146 2.3E-47 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 147 366 1.2E-70 T 12-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 SUPERFAMILY SSF53597 145 363 8.83E-59 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 Gene3D G3DSA:3.40.430.10 137 368 1.2E-74 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 100 1.5E-19 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 Gene3D G3DSA:3.40.140.10 1 136 7.7E-45 T 12-10-2018 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 Pfam PF01872 RibD C-terminal domain 148 360 1.6E-57 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 362 2.3E-141 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 YPK_3258 7c90c704fe1e6282b6ae3cba310918a2 369 PIRSF PIRSF006769 1 368 3.7E-127 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 SUPERFAMILY SSF50447 205 301 4.71E-31 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 2.7E-236 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 Gene3D G3DSA:2.40.30.10 338 393 4.5E-29 T 12-10-2018 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 Gene3D G3DSA:3.40.50.300 1 203 1.3E-69 T 12-10-2018 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.6E-14 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 9.1E-58 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 SUPERFAMILY SSF50465 298 393 9.21E-36 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.667 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 2.2E-17 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.0E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.0E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.0E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.0E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.0E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 Gene3D G3DSA:2.40.30.10 206 334 7.6E-53 T 12-10-2018 YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 SUPERFAMILY SSF52540 6 219 6.27E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0278 7674c1ea56bdb448966b5caedb8b0691 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 2.4E-33 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 169 176 - T 12-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 SUPERFAMILY SSF54719 95 206 3.93E-45 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 Gene3D G3DSA:1.10.287.990 20 90 1.9E-31 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 1.7E-31 T 12-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 PIRSF PIRSF000349 1 207 7.8E-80 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 SUPERFAMILY SSF46609 1 90 3.27E-36 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 2.8E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 167 179 2.8E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 2.8E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 2.8E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 2.8E-27 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 202 2.3E-41 T 12-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_0035 f1bd1488ff5931b279c69926a564d05b 207 Gene3D G3DSA:2.40.500.20 95 207 4.7E-50 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_2960 c782f3af55a73339f2c85351710e716e 133 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 130 4.9E-50 T 12-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 YPK_2960 c782f3af55a73339f2c85351710e716e 133 Pfam PF03061 Thioesterase superfamily 20 103 3.9E-16 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 YPK_2960 c782f3af55a73339f2c85351710e716e 133 PIRSF PIRSF003230 1 133 1.8E-46 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 YPK_2960 c782f3af55a73339f2c85351710e716e 133 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 125 6.6E-42 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 YPK_2960 c782f3af55a73339f2c85351710e716e 133 Gene3D G3DSA:3.10.129.10 1 133 6.6E-41 T 12-10-2018 YPK_2960 c782f3af55a73339f2c85351710e716e 133 SUPERFAMILY SSF54637 4 132 5.9E-38 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_1794 d10c83329222e4adc58385186e7decc7 283 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 45 183 6.8E-27 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_1794 d10c83329222e4adc58385186e7decc7 283 Pfam PF01471 Putative peptidoglycan binding domain 218 269 2.1E-9 T 12-10-2018 IPR002477 Peptidoglycan binding-like YPK_1794 d10c83329222e4adc58385186e7decc7 283 SMART SM00644 36 182 2.4E-25 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_1794 d10c83329222e4adc58385186e7decc7 283 SUPERFAMILY SSF55846 28 198 2.49E-52 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_1794 d10c83329222e4adc58385186e7decc7 283 Gene3D G3DSA:1.10.101.10 197 280 9.5E-30 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 YPK_1794 d10c83329222e4adc58385186e7decc7 283 SUPERFAMILY SSF47090 202 279 2.75E-22 T 12-10-2018 IPR036365 PGBD-like superfamily YPK_1794 d10c83329222e4adc58385186e7decc7 283 Gene3D G3DSA:3.40.80.10 46 196 5.7E-49 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_3962 fdc4afc79348071389a425628a8cd6f3 439 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 142 159 - T 12-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 YPK_3962 fdc4afc79348071389a425628a8cd6f3 439 Gene3D G3DSA:3.40.190.10 31 385 1.6E-165 T 12-10-2018 YPK_3962 fdc4afc79348071389a425628a8cd6f3 439 Pfam PF13416 Bacterial extracellular solute-binding protein 46 359 2.1E-41 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_3962 fdc4afc79348071389a425628a8cd6f3 439 SUPERFAMILY SSF53850 27 426 1.14E-73 T 12-10-2018 YPK_3962 fdc4afc79348071389a425628a8cd6f3 439 Gene3D G3DSA:3.40.190.10 147 425 1.6E-165 T 12-10-2018 YPK_2227 b9c37fe670c8ef716d2de0942868dc40 505 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YPK_2227 b9c37fe670c8ef716d2de0942868dc40 505 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 17 500 1.0E-263 T 12-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 YPK_2227 b9c37fe670c8ef716d2de0942868dc40 505 Gene3D G3DSA:3.40.309.10 261 451 1.7E-141 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_2227 b9c37fe670c8ef716d2de0942868dc40 505 Gene3D G3DSA:3.40.605.10 21 463 1.7E-141 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_2227 b9c37fe670c8ef716d2de0942868dc40 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 284 295 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YPK_2227 b9c37fe670c8ef716d2de0942868dc40 505 SUPERFAMILY SSF53720 13 469 2.09E-120 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_2227 b9c37fe670c8ef716d2de0942868dc40 505 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 15 500 58.288 T 12-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 YPK_2227 b9c37fe670c8ef716d2de0942868dc40 505 Pfam PF00171 Aldehyde dehydrogenase family 28 472 9.1E-119 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_0168 95cca9b73b0c79797612b1236842f64c 771 Pfam PF02421 Ferrous iron transport protein B 5 163 2.6E-65 T 12-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 YPK_0168 95cca9b73b0c79797612b1236842f64c 771 Pfam PF07664 Ferrous iron transport protein B C terminus 456 508 7.7E-22 T 12-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 YPK_0168 95cca9b73b0c79797612b1236842f64c 771 SUPERFAMILY SSF52540 4 168 4.02E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0168 95cca9b73b0c79797612b1236842f64c 771 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 688 2.0E-226 T 12-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 YPK_0168 95cca9b73b0c79797612b1236842f64c 771 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 161 1.0E-11 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_0168 95cca9b73b0c79797612b1236842f64c 771 Pfam PF07670 Nucleoside recognition 354 444 8.8E-13 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 YPK_0168 95cca9b73b0c79797612b1236842f64c 771 Pfam PF07670 Nucleoside recognition 513 690 1.9E-36 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 YPK_0168 95cca9b73b0c79797612b1236842f64c 771 Gene3D G3DSA:3.40.50.300 1 169 2.0E-48 T 12-10-2018 YPK_2503 eea113e70b6baebe8ab56acde6e5ecf6 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 79 95 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YPK_2503 eea113e70b6baebe8ab56acde6e5ecf6 446 Pfam PF07690 Major Facilitator Superfamily 30 364 5.2E-29 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2503 eea113e70b6baebe8ab56acde6e5ecf6 446 SUPERFAMILY SSF103473 13 438 3.27E-57 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2503 eea113e70b6baebe8ab56acde6e5ecf6 446 Gene3D G3DSA:1.20.1250.20 22 438 1.5E-52 T 12-10-2018 YPK_1948 036b47275796147511be6ae9130d2852 224 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 220 1.2E-74 T 12-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 YPK_1948 036b47275796147511be6ae9130d2852 224 Gene3D G3DSA:1.10.150.240 16 95 2.1E-61 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPK_1948 036b47275796147511be6ae9130d2852 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 194 7.4E-20 T 12-10-2018 YPK_1948 036b47275796147511be6ae9130d2852 224 SUPERFAMILY SSF56784 2 222 3.01E-47 T 12-10-2018 IPR036412 HAD-like superfamily YPK_1948 036b47275796147511be6ae9130d2852 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 97 189 2.5E-14 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1948 036b47275796147511be6ae9130d2852 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 54 195 1.3E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1948 036b47275796147511be6ae9130d2852 224 Gene3D G3DSA:3.40.50.1000 5 218 2.1E-61 T 12-10-2018 IPR023214 HAD superfamily YPK_1948 036b47275796147511be6ae9130d2852 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 8.2E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1948 036b47275796147511be6ae9130d2852 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 8.2E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1948 036b47275796147511be6ae9130d2852 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 8.2E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1948 036b47275796147511be6ae9130d2852 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 184 197 8.2E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0226 641701b6900493686a5790cade6a71a4 362 PIRSF PIRSF001455 11 359 4.2E-105 T 12-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 YPK_0226 641701b6900493686a5790cade6a71a4 362 Gene3D G3DSA:1.20.1090.10 173 361 1.4E-64 T 12-10-2018 YPK_0226 641701b6900493686a5790cade6a71a4 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 361 74.061 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 YPK_0226 641701b6900493686a5790cade6a71a4 362 SUPERFAMILY SSF56796 4 357 1.7E-115 T 12-10-2018 YPK_0226 641701b6900493686a5790cade6a71a4 362 Pfam PF01761 3-dehydroquinate synthase 67 326 1.2E-108 T 12-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 YPK_0226 641701b6900493686a5790cade6a71a4 362 Gene3D G3DSA:3.40.50.1970 1 172 3.2E-64 T 12-10-2018 YPK_0226 641701b6900493686a5790cade6a71a4 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 355 2.0E-119 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 SUPERFAMILY SSF90123 147 459 1.31E-65 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 Gene3D G3DSA:1.20.1560.10 146 459 3.8E-72 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 Gene3D G3DSA:3.40.50.300 465 712 5.5E-88 T 12-10-2018 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 ProSitePatterns PS00211 ABC transporters family signature. 612 626 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 Pfam PF00664 ABC transporter transmembrane region 162 428 1.4E-45 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 SUPERFAMILY SSF52540 468 710 2.21E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 SMART SM00382 500 684 3.2E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 18 712 0.0 T 12-10-2018 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 Pfam PF03412 Peptidase C39 family 21 133 7.7E-7 T 12-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 Pfam PF00005 ABC transporter 491 640 9.1E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2002 6716db7962c27aa4b34c8a9d932970cf 712 Gene3D G3DSA:3.90.70.10 17 133 3.0E-14 T 12-10-2018 YPK_3516 e77f27c48517e610b44ee7374fded134 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 305 1.7E-110 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3516 e77f27c48517e610b44ee7374fded134 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3516 e77f27c48517e610b44ee7374fded134 306 Pfam PF07478 D-ala D-ala ligase C-terminus 103 302 1.1E-68 T 12-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3516 e77f27c48517e610b44ee7374fded134 306 PIRSF PIRSF039102 41 306 2.6E-93 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3516 e77f27c48517e610b44ee7374fded134 306 PIRSF PIRSF039102 1 46 2.4E-7 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3516 e77f27c48517e610b44ee7374fded134 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 306 37.037 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3516 e77f27c48517e610b44ee7374fded134 306 SUPERFAMILY SSF52440 3 96 2.97E-29 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_3516 e77f27c48517e610b44ee7374fded134 306 Gene3D G3DSA:3.30.1490.20 111 183 2.3E-89 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_3516 e77f27c48517e610b44ee7374fded134 306 Pfam PF01820 D-ala D-ala ligase N-terminus 4 86 6.1E-18 T 12-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3516 e77f27c48517e610b44ee7374fded134 306 Gene3D G3DSA:3.30.470.20 85 301 2.3E-89 T 12-10-2018 YPK_3516 e77f27c48517e610b44ee7374fded134 306 Gene3D G3DSA:3.40.50.20 1 84 7.2E-33 T 12-10-2018 YPK_3516 e77f27c48517e610b44ee7374fded134 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3516 e77f27c48517e610b44ee7374fded134 306 SUPERFAMILY SSF56059 97 302 3.54E-62 T 12-10-2018 YPK_2455 7f2f39c2950546f4b4abf26885228328 268 SUPERFAMILY SSF51621 2 253 4.54E-82 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_2455 7f2f39c2950546f4b4abf26885228328 268 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 243 3.3E-60 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 YPK_2455 7f2f39c2950546f4b4abf26885228328 268 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 6 253 2.1E-136 T 12-10-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 YPK_2455 7f2f39c2950546f4b4abf26885228328 268 Gene3D G3DSA:3.20.20.60 3 258 1.5E-92 T 12-10-2018 YPK_3473 880e2ecc6263dd9834421c1512aa9da2 284 Gene3D G3DSA:3.40.50.620 1 179 1.0E-79 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3473 880e2ecc6263dd9834421c1512aa9da2 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 5.2E-101 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 YPK_3473 880e2ecc6263dd9834421c1512aa9da2 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.773 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 YPK_3473 880e2ecc6263dd9834421c1512aa9da2 284 Gene3D G3DSA:3.30.1300.10 180 283 7.6E-31 T 12-10-2018 YPK_3473 880e2ecc6263dd9834421c1512aa9da2 284 SUPERFAMILY SSF52374 1 281 2.25E-105 T 12-10-2018 YPK_3473 880e2ecc6263dd9834421c1512aa9da2 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 281 3.9E-110 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 YPK_3429 579129eaafb4296579db84cd33f26a48 349 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 4 341 28.522 T 12-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3429 579129eaafb4296579db84cd33f26a48 349 Gene3D G3DSA:3.30.2340.10 166 300 7.2E-121 T 12-10-2018 YPK_3429 579129eaafb4296579db84cd33f26a48 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 190 336 2.2E-19 T 12-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3429 579129eaafb4296579db84cd33f26a48 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 8 166 1.2E-41 T 12-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3429 579129eaafb4296579db84cd33f26a48 349 SUPERFAMILY SSF55120 3 339 2.59E-106 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3429 579129eaafb4296579db84cd33f26a48 349 Gene3D G3DSA:3.30.2350.20 16 336 7.2E-121 T 12-10-2018 YPK_3429 579129eaafb4296579db84cd33f26a48 349 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 3 340 3.6E-80 T 12-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3429 579129eaafb4296579db84cd33f26a48 349 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 76 89 - T 12-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 YPK_2741 cf3314fe03049e377b91a88291525301 223 SUPERFAMILY SSF161098 16 205 6.67E-42 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2741 cf3314fe03049e377b91a88291525301 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 49 215 2.1E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2741 cf3314fe03049e377b91a88291525301 223 Gene3D G3DSA:1.10.3720.10 8 221 1.6E-46 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3382 1de3faa088608ac1d8d14bdd2607e517 314 SUPERFAMILY SSF52518 6 173 6.29E-37 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3382 1de3faa088608ac1d8d14bdd2607e517 314 Pfam PF02780 Transketolase, C-terminal domain 181 303 4.5E-29 T 12-10-2018 IPR033248 Transketolase, C-terminal domain YPK_3382 1de3faa088608ac1d8d14bdd2607e517 314 SMART SM00861 1 171 8.3E-30 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_3382 1de3faa088608ac1d8d14bdd2607e517 314 SUPERFAMILY SSF52922 176 311 1.2E-31 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_3382 1de3faa088608ac1d8d14bdd2607e517 314 Gene3D G3DSA:3.40.50.970 3 176 4.4E-43 T 12-10-2018 YPK_3382 1de3faa088608ac1d8d14bdd2607e517 314 Gene3D G3DSA:3.40.50.920 181 313 4.4E-34 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_3382 1de3faa088608ac1d8d14bdd2607e517 314 Pfam PF02779 Transketolase, pyrimidine binding domain 44 167 4.1E-18 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_0842 347dd250640921dae7a932841b657180 187 Pfam PF17283 SprT-like zinc ribbon domain 142 182 7.3E-11 T 12-10-2018 IPR035240 SprT-like, zinc ribbon domain YPK_0842 347dd250640921dae7a932841b657180 187 Hamap MF_00746 Protein SprT [sprT]. 29 182 41.885 T 12-10-2018 IPR023483 Uncharacterised protein family SprT YPK_0842 347dd250640921dae7a932841b657180 187 Pfam PF10263 SprT-like family 38 136 9.0E-17 T 12-10-2018 IPR006640 SprT-like YPK_0842 347dd250640921dae7a932841b657180 187 SMART SM00731 33 182 2.5E-68 T 12-10-2018 IPR006640 SprT-like YPK_3411 f32c6fd55393d600798bfa5cf16806a3 459 Gene3D G3DSA:1.10.760.10 180 327 3.3E-106 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YPK_3411 f32c6fd55393d600798bfa5cf16806a3 459 SMART SM01235 14 151 2.8E-49 T 12-10-2018 IPR025992 Haem-binding domain YPK_3411 f32c6fd55393d600798bfa5cf16806a3 459 Gene3D G3DSA:1.10.760.10 178 455 3.3E-106 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YPK_3411 f32c6fd55393d600798bfa5cf16806a3 459 Pfam PF00034 Cytochrome c 335 451 4.7E-7 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3411 f32c6fd55393d600798bfa5cf16806a3 459 Pfam PF03150 Di-haem cytochrome c peroxidase 180 327 1.9E-49 T 12-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 YPK_3411 f32c6fd55393d600798bfa5cf16806a3 459 SUPERFAMILY SSF46626 316 455 2.01E-37 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YPK_3411 f32c6fd55393d600798bfa5cf16806a3 459 SUPERFAMILY SSF46626 165 315 1.26E-46 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YPK_3411 f32c6fd55393d600798bfa5cf16806a3 459 Pfam PF14376 Haem-binding domain 17 148 8.5E-33 T 12-10-2018 IPR025992 Haem-binding domain YPK_1516 eac5bc96c2d4f2997a6e5ccd095d02cd 268 Pfam PF01925 Sulfite exporter TauE/SafE 14 248 7.0E-45 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 YPK_3611 53515597cbf74c2c8c229c6e8ec3e1db 180 SUPERFAMILY SSF52972 1 169 1.4E-56 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_3611 53515597cbf74c2c8c229c6e8ec3e1db 180 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 29.187 T 12-10-2018 IPR002786 Non-canonical purine NTP phosphatase YPK_3611 53515597cbf74c2c8c229c6e8ec3e1db 180 Gene3D G3DSA:3.90.950.10 1 175 5.6E-61 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_3611 53515597cbf74c2c8c229c6e8ec3e1db 180 Pfam PF01931 Protein of unknown function DUF84 7 165 5.5E-52 T 12-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 YPK_3611 53515597cbf74c2c8c229c6e8ec3e1db 180 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 7 170 2.8E-50 T 12-10-2018 IPR002786 Non-canonical purine NTP phosphatase YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 SUPERFAMILY SSF52540 140 384 7.99E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 SMART SM00382 161 312 6.0E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 Gene3D G3DSA:1.10.10.60 380 470 1.7E-28 T 12-10-2018 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 467 7.7E-244 T 12-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 SUPERFAMILY SSF52172 6 186 2.56E-47 T 12-10-2018 IPR011006 CheY-like superfamily YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 SMART SM00448 4 115 8.5E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 Gene3D G3DSA:1.10.8.60 312 378 3.0E-19 T 12-10-2018 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 Gene3D G3DSA:3.40.50.300 129 311 2.2E-65 T 12-10-2018 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 Pfam PF00072 Response regulator receiver domain 6 115 6.3E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 Gene3D G3DSA:3.40.50.2300 1 124 1.4E-45 T 12-10-2018 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 Pfam PF00158 Sigma-54 interaction domain 141 307 1.9E-69 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 SUPERFAMILY SSF46689 381 470 2.01E-24 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 Pfam PF02954 Bacterial regulatory protein, Fis family 428 467 1.7E-15 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 450 8.0E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 450 470 8.0E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_4191 5adc09c96c027ae00b91caac8684fb71 470 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 105 698 1.8E-159 T 12-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 253 272 1.8E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 428 451 1.8E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 579 606 1.8E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 384 395 1.8E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 495 518 1.8E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 467 489 1.8E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 17 716 0.0 T 12-10-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 Pfam PF02867 Ribonucleotide reductase, barrel domain 178 695 5.9E-141 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 SUPERFAMILY SSF51998 177 700 2.84E-185 T 12-10-2018 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 Gene3D G3DSA:1.10.1650.20 296 347 1.8E-28 T 12-10-2018 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 568 590 - T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 SUPERFAMILY SSF48168 17 176 2.49E-61 T 12-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 Pfam PF08343 Ribonucleotide reductase N-terminal 18 99 7.8E-34 T 12-10-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1117 bef513f4fdcdc8233f599821cf49ff11 716 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 101 173 1.1E-11 T 12-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Gene3D G3DSA:4.10.520.10 1 98 7.5E-38 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.046 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 SUPERFAMILY SSF47729 3 92 2.21E-31 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 9.9E-31 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.1E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.1E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.1E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 1.4E-53 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 YPK_1826 d0a1162ac8bd49845a74ad5bc8fc2a32 98 SMART SM00411 3 92 2.2E-42 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_0586 8006388792644373b4dcc83ae6cefade 371 Gene3D G3DSA:2.40.50.140 295 352 2.1E-30 T 12-10-2018 YPK_0586 8006388792644373b4dcc83ae6cefade 371 SUPERFAMILY SSF52540 5 248 6.6E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0586 8006388792644373b4dcc83ae6cefade 371 Pfam PF00005 ABC transporter 20 162 4.7E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0586 8006388792644373b4dcc83ae6cefade 371 Gene3D G3DSA:3.40.50.300 4 227 1.9E-59 T 12-10-2018 YPK_0586 8006388792644373b4dcc83ae6cefade 371 Gene3D G3DSA:2.40.50.940 228 361 2.1E-30 T 12-10-2018 YPK_0586 8006388792644373b4dcc83ae6cefade 371 Pfam PF08402 TOBE domain 289 360 3.1E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_0586 8006388792644373b4dcc83ae6cefade 371 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0586 8006388792644373b4dcc83ae6cefade 371 SMART SM00382 29 217 8.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0586 8006388792644373b4dcc83ae6cefade 371 SUPERFAMILY SSF50331 242 368 4.86E-26 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1596 91823c944f3ed93b635491e7bc6e3f95 321 PIRSF PIRSF029038 1 320 1.1E-153 T 12-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 YPK_1596 91823c944f3ed93b635491e7bc6e3f95 321 Gene3D G3DSA:3.40.50.150 45 307 2.7E-78 T 12-10-2018 YPK_1596 91823c944f3ed93b635491e7bc6e3f95 321 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 11 310 53.881 T 12-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 YPK_1596 91823c944f3ed93b635491e7bc6e3f95 321 Pfam PF05971 Protein of unknown function (DUF890) 10 307 5.3E-122 T 12-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 YPK_1596 91823c944f3ed93b635491e7bc6e3f95 321 SUPERFAMILY SSF53335 48 306 6.89E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_1061 f9f203d5a2e9ee5cd047839243def9d5 149 SUPERFAMILY SSF52218 1 148 1.9E-39 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_1061 f9f203d5a2e9ee5cd047839243def9d5 149 Gene3D G3DSA:3.40.50.360 1 149 1.1E-43 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_1061 f9f203d5a2e9ee5cd047839243def9d5 149 PRINTS PR00369 Flavodoxin signature 84 94 5.3E-7 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_1061 f9f203d5a2e9ee5cd047839243def9d5 149 PRINTS PR00369 Flavodoxin signature 108 127 5.3E-7 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_1061 f9f203d5a2e9ee5cd047839243def9d5 149 PRINTS PR00369 Flavodoxin signature 53 64 5.3E-7 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_1061 f9f203d5a2e9ee5cd047839243def9d5 149 Pfam PF00258 Flavodoxin 6 137 6.8E-23 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YPK_3930 ab68d13dfe36767fd914be7e50f42599 483 Pfam PF02386 Cation transport protein 37 477 5.0E-92 T 12-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 YPK_3930 ab68d13dfe36767fd914be7e50f42599 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 466 4.3E-126 T 12-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 YPK_3930 ab68d13dfe36767fd914be7e50f42599 483 PIRSF PIRSF006247 1 483 3.5E-182 T 12-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 698 1.2E-286 T 12-10-2018 IPR004811 RelA/SpoT family GO:0015969 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 SUPERFAMILY SSF109604 3 190 2.39E-75 T 12-10-2018 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 Pfam PF02824 TGS domain 388 447 2.2E-20 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 Gene3D G3DSA:1.10.3210.10 3 190 1.0E-80 T 12-10-2018 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 SUPERFAMILY SSF55021 629 699 4.4E-5 T 12-10-2018 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 1.4E-35 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 SMART SM00954 235 345 8.8E-62 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 SUPERFAMILY SSF81271 375 447 3.92E-21 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 Pfam PF13328 HD domain 26 175 4.1E-53 T 12-10-2018 IPR003607 HD/PDEase domain YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 SUPERFAMILY SSF81301 180 392 4.25E-62 T 12-10-2018 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 SMART SM00471 41 153 1.3E-11 T 12-10-2018 IPR003607 HD/PDEase domain YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 Pfam PF13291 ACT domain 622 699 2.0E-15 T 12-10-2018 IPR002912 ACT domain YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 Gene3D G3DSA:3.30.460.10 193 325 5.8E-48 T 12-10-2018 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 Gene3D G3DSA:3.30.70.260 623 702 2.7E-13 T 12-10-2018 YPK_4178 01fc5306585b2b46f6298e05c1e8fb74 702 Gene3D G3DSA:3.10.20.30 381 455 7.1E-29 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_4125 1bd5ddfe56fc2cc62c269f4a2e4fd4c2 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 145 153 - T 12-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 YPK_4125 1bd5ddfe56fc2cc62c269f4a2e4fd4c2 329 Pfam PF13531 Bacterial extracellular solute-binding protein 41 280 4.1E-44 T 12-10-2018 YPK_4125 1bd5ddfe56fc2cc62c269f4a2e4fd4c2 329 Gene3D G3DSA:3.40.190.10 27 295 6.1E-139 T 12-10-2018 YPK_4125 1bd5ddfe56fc2cc62c269f4a2e4fd4c2 329 Gene3D G3DSA:3.40.190.10 114 325 6.1E-139 T 12-10-2018 YPK_4125 1bd5ddfe56fc2cc62c269f4a2e4fd4c2 329 SUPERFAMILY SSF53850 21 326 2.08E-91 T 12-10-2018 YPK_4125 1bd5ddfe56fc2cc62c269f4a2e4fd4c2 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 13 326 3.4E-176 T 12-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 YPK_3101 ab4124aee7879dfeef8a77d5dcd2b34b 68 Gene3D G3DSA:3.30.240.10 1 53 8.1E-13 T 12-10-2018 IPR038202 Regulatory protein cro superfamily YPK_3101 ab4124aee7879dfeef8a77d5dcd2b34b 68 ProDom PD054632 CRO REPRESSOR TRANSCRIPTION REGULATORY 3D-STRUCTURE DNA-BINDING DIRECT EARLY REGULATION SEQUENCING 3 43 2.0E-11 T 12-10-2018 IPR000655 Regulatory protein cro GO:0003677|GO:0006355 YPK_3101 ab4124aee7879dfeef8a77d5dcd2b34b 68 Pfam PF09048 Cro 1 40 3.0E-13 T 12-10-2018 IPR000655 Regulatory protein cro GO:0003677|GO:0006355 YPK_3101 ab4124aee7879dfeef8a77d5dcd2b34b 68 SUPERFAMILY SSF47413 1 64 2.81E-23 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0233 5fd22676e5b86efae4c69a74bbdd70e9 268 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 157 167 - T 12-10-2018 IPR024002 Formate/nitrite transporter, conserved site YPK_0233 5fd22676e5b86efae4c69a74bbdd70e9 268 Gene3D G3DSA:1.20.1080.10 1 258 1.7E-91 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 YPK_0233 5fd22676e5b86efae4c69a74bbdd70e9 268 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 12-10-2018 IPR024002 Formate/nitrite transporter, conserved site YPK_0233 5fd22676e5b86efae4c69a74bbdd70e9 268 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 20 250 9.7E-80 T 12-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 YPK_0233 5fd22676e5b86efae4c69a74bbdd70e9 268 Pfam PF01226 Formate/nitrite transporter 18 247 1.7E-56 T 12-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 YPK_2468 e670695b952b66b10ad4b4a2a1f0d6c7 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 184 25.828 T 12-10-2018 IPR022929 Putative manganese efflux pump MntP YPK_2468 e670695b952b66b10ad4b4a2a1f0d6c7 189 Pfam PF02659 Putative manganese efflux pump 31 181 1.1E-55 T 12-10-2018 IPR003810 Putative manganese efflux pump YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 PRINTS PR00123 ATP synthase A subunit signature 107 123 1.8E-15 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 PRINTS PR00123 ATP synthase A subunit signature 254 269 1.8E-15 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 PRINTS PR00123 ATP synthase A subunit signature 206 228 1.8E-15 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 Pfam PF00119 ATP synthase A chain 50 268 1.9E-54 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 SUPERFAMILY SSF81336 98 268 9.55E-49 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 Gene3D G3DSA:1.20.120.220 98 274 2.0E-69 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 274 15.972 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 42 269 1.6E-43 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4220 e339b83b8cbf52b62b3cb4651fe72520 274 ProSitePatterns PS00449 ATP synthase a subunit signature. 209 218 - T 12-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_1778 d7ac4c99a1f640006063cf0fc2a8c1ae 184 SMART SM00972 121 181 5.4E-16 T 12-10-2018 IPR007893 Spore coat protein U YPK_1778 d7ac4c99a1f640006063cf0fc2a8c1ae 184 Pfam PF05229 Spore Coat Protein U domain 27 181 6.5E-30 T 12-10-2018 IPR007893 Spore coat protein U YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 SUPERFAMILY SSF47413 3 60 6.38E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 315 2.1E-152 T 12-10-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Gene3D G3DSA:3.40.50.2300 163 281 6.0E-68 T 12-10-2018 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Pfam PF13377 Periplasmic binding protein-like domain 168 317 1.4E-15 T 12-10-2018 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 3.2E-20 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Gene3D G3DSA:1.10.260.40 1 61 1.6E-21 T 12-10-2018 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 SMART SM00354 4 74 2.8E-33 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 SUPERFAMILY SSF53822 63 316 3.34E-62 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 6.3E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 6.3E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 12-10-2018 YPK_0496 cf9cd4000d653d9fd700d9d75f0ce0b7 317 Gene3D G3DSA:3.40.50.2300 68 304 6.0E-68 T 12-10-2018 YPK_2294 40089f009c491763e1646387a9efa849 96 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 12 90 1.9E-24 T 12-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Hamap MF_01973 Lon protease [lon]. 11 772 72.03 T 12-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 SMART SM00382 348 492 6.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Gene3D G3DSA:3.30.230.10 585 772 9.3E-86 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Gene3D G3DSA:1.10.8.60 491 584 5.1E-33 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Gene3D G3DSA:3.40.50.300 314 490 4.9E-61 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Gene3D G3DSA:1.20.58.1480 120 245 3.2E-47 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 9.7E-18 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 SUPERFAMILY SSF88697 10 201 7.46E-53 T 12-10-2018 IPR015947 PUA-like superfamily YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 12-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 7.2E-44 T 12-10-2018 IPR003111 Lon, substrate-binding domain YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 SUPERFAMILY SSF52540 313 586 3.95E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 SUPERFAMILY SSF54211 595 770 3.79E-58 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 4.0E-56 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 4.0E-56 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 4.0E-56 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 4.0E-56 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 4.0E-56 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 770 0.0 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Gene3D G3DSA:2.30.130.40 1 118 3.7E-38 T 12-10-2018 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 SMART SM00464 10 202 5.0E-84 T 12-10-2018 IPR003111 Lon, substrate-binding domain YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 3.7E-95 T 12-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 YPK_3232 3b4adb0abc3514ee3fea5a0c5fe4b16b 784 PIRSF PIRSF001174 1 775 0.0 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 YPK_1998 356973531c9684701f7aca4cf085e6c6 523 Pfam PF00005 ABC transporter 35 184 2.2E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1998 356973531c9684701f7aca4cf085e6c6 523 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1998 356973531c9684701f7aca4cf085e6c6 523 Pfam PF00005 ABC transporter 286 439 3.6E-19 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1998 356973531c9684701f7aca4cf085e6c6 523 SUPERFAMILY SSF52540 18 240 1.63E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1998 356973531c9684701f7aca4cf085e6c6 523 SUPERFAMILY SSF52540 283 497 4.74E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1998 356973531c9684701f7aca4cf085e6c6 523 Gene3D G3DSA:3.40.50.300 277 520 7.0E-42 T 12-10-2018 YPK_1998 356973531c9684701f7aca4cf085e6c6 523 Gene3D G3DSA:3.40.50.300 4 255 7.4E-60 T 12-10-2018 YPK_1998 356973531c9684701f7aca4cf085e6c6 523 SMART SM00382 44 232 1.3E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1998 356973531c9684701f7aca4cf085e6c6 523 SMART SM00382 293 488 4.9E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2033 c087875876f3687224fa822a14319ccc 871 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 641 3.5E-255 T 12-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 Gene3D G3DSA:2.70.20.10 219 479 4.6E-164 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YPK_2033 c087875876f3687224fa822a14319ccc 871 Gene3D G3DSA:3.30.65.10 751 813 5.5E-32 T 12-10-2018 YPK_2033 c087875876f3687224fa822a14319ccc 871 Gene3D G3DSA:3.30.65.10 705 750 5.6E-6 T 12-10-2018 YPK_2033 c087875876f3687224fa822a14319ccc 871 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 329 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 YPK_2033 c087875876f3687224fa822a14319ccc 871 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 738 55.136 T 12-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 197 215 3.8E-37 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 320 329 3.8E-37 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 496 510 3.8E-37 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 112 125 3.8E-37 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 3.8E-37 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 SUPERFAMILY SSF57783 751 813 3.57E-19 T 12-10-2018 YPK_2033 c087875876f3687224fa822a14319ccc 871 Gene3D G3DSA:3.40.50.140 1 169 3.0E-67 T 12-10-2018 YPK_2033 c087875876f3687224fa822a14319ccc 871 SUPERFAMILY SSF56712 3 615 5.62E-202 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain YPK_2033 c087875876f3687224fa822a14319ccc 871 SUPERFAMILY SSF57783 706 749 2.21E-7 T 12-10-2018 YPK_2033 c087875876f3687224fa822a14319ccc 871 Gene3D G3DSA:2.20.25.10 814 871 8.0E-31 T 12-10-2018 YPK_2033 c087875876f3687224fa822a14319ccc 871 SMART SM00493 3 138 1.3E-34 T 12-10-2018 IPR006171 TOPRIM domain YPK_2033 c087875876f3687224fa822a14319ccc 871 SUPERFAMILY SSF57783 815 870 1.63E-22 T 12-10-2018 YPK_2033 c087875876f3687224fa822a14319ccc 871 Pfam PF01751 Toprim domain 5 148 8.6E-33 T 12-10-2018 IPR006171 TOPRIM domain YPK_2033 c087875876f3687224fa822a14319ccc 871 SMART SM00436 139 227 1.0E-47 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 715 750 1.1E-11 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YPK_2033 c087875876f3687224fa822a14319ccc 871 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 603 628 8.9E-6 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YPK_2033 c087875876f3687224fa822a14319ccc 871 Gene3D G3DSA:1.10.290.10 286 410 4.6E-164 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YPK_2033 c087875876f3687224fa822a14319ccc 871 Pfam PF08272 Topoisomerase I zinc-ribbon-like 830 869 1.0E-23 T 12-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 Pfam PF08272 Topoisomerase I zinc-ribbon-like 764 799 2.9E-12 T 12-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 SMART SM00437 278 533 1.2E-119 T 12-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 Pfam PF01131 DNA topoisomerase 163 571 2.2E-126 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 YPK_2033 c087875876f3687224fa822a14319ccc 871 Gene3D G3DSA:1.10.460.10 171 577 4.6E-164 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YPK_2786 50990279850eb2f34a2bb4da78ae6ec1 602 SUPERFAMILY SSF53850 50 591 2.53E-116 T 12-10-2018 YPK_2786 50990279850eb2f34a2bb4da78ae6ec1 602 PIRSF PIRSF002741 5 593 4.6E-147 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YPK_2786 50990279850eb2f34a2bb4da78ae6ec1 602 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 99 502 1.8E-76 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_2786 50990279850eb2f34a2bb4da78ae6ec1 602 Gene3D G3DSA:3.10.105.10 310 568 8.0E-224 T 12-10-2018 YPK_2786 50990279850eb2f34a2bb4da78ae6ec1 602 Gene3D G3DSA:3.40.190.10 29 588 8.0E-224 T 12-10-2018 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Pfam PF01612 3'-5' exonuclease 333 520 2.7E-44 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:3.40.50.1010 9 284 1.4E-96 T 12-10-2018 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 ProSitePatterns PS00447 DNA polymerase family A signature. 757 776 - T 12-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 272 6.4E-31 T 12-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:1.10.150.20 712 855 8.6E-116 T 12-10-2018 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:1.20.1060.10 546 661 3.8E-40 T 12-10-2018 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 TIGRFAM TIGR00593 pola: DNA polymerase I 9 932 2.3E-287 T 12-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 SUPERFAMILY SSF53098 329 521 2.01E-58 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 SMART SM00475 7 268 5.1E-140 T 12-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:3.30.420.10 329 545 5.1E-74 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 SMART SM00482 689 896 1.9E-115 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 SUPERFAMILY SSF88723 7 170 2.45E-57 T 12-10-2018 IPR029060 PIN-like domain superfamily YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:1.10.150.20 174 253 1.4E-96 T 12-10-2018 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 SUPERFAMILY SSF47807 171 291 1.26E-31 T 12-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 1.5E-54 T 12-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Pfam PF00476 DNA polymerase family A 555 929 1.1E-155 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 SMART SM00474 333 520 8.8E-48 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 SUPERFAMILY SSF56672 525 932 2.89E-157 T 12-10-2018 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 SMART SM00279 173 208 1.2E-13 T 12-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 658 680 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 681 696 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 879 892 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 794 805 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 733 746 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 703 726 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 848 864 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 816 827 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 757 782 2.7E-79 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4195 bb50b6a6d25c795a8333d5a46da655f4 932 Gene3D G3DSA:3.30.70.370 667 928 8.6E-116 T 12-10-2018 YPK_2122 bbfa85f7f62484ed0b87b463b434cad4 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.5E-111 T 12-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 YPK_2122 bbfa85f7f62484ed0b87b463b434cad4 270 SUPERFAMILY SSF52540 1 269 1.58E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2122 bbfa85f7f62484ed0b87b463b434cad4 270 Gene3D G3DSA:3.40.50.300 1 260 3.6E-76 T 12-10-2018 YPK_2122 bbfa85f7f62484ed0b87b463b434cad4 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 227 2.1E-20 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain YPK_2122 bbfa85f7f62484ed0b87b463b434cad4 270 PIRSF PIRSF003092 1 270 8.0E-99 T 12-10-2018 IPR025501 ATP binding protein MinD YPK_0714 724cdbe86d49868f3e933c6a314510c3 446 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 348 357 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_0714 724cdbe86d49868f3e933c6a314510c3 446 SUPERFAMILY SSF52540 95 363 2.66E-90 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0714 724cdbe86d49868f3e933c6a314510c3 446 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 357 1.2E-66 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_0714 724cdbe86d49868f3e933c6a314510c3 446 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 8 437 4.2E-160 T 12-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_0714 724cdbe86d49868f3e933c6a314510c3 446 Gene3D G3DSA:3.40.50.12240 15 440 1.7E-142 T 12-10-2018 YPK_0714 724cdbe86d49868f3e933c6a314510c3 446 SMART SM00382 159 341 3.5E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0920 e23dede0e8320359d4257ade491ec939 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 299 59.521 T 12-10-2018 IPR023009 Tyrosine recombinase XerC/XerD YPK_0920 e23dede0e8320359d4257ade491ec939 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 299 63.924 T 12-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 YPK_0920 e23dede0e8320359d4257ade491ec939 299 Gene3D G3DSA:1.10.150.130 4 100 6.0E-22 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_0920 e23dede0e8320359d4257ade491ec939 299 Pfam PF00589 Phage integrase family 114 285 7.9E-56 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_0920 e23dede0e8320359d4257ade491ec939 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 299 3.6E-119 T 12-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 YPK_0920 e23dede0e8320359d4257ade491ec939 299 SUPERFAMILY SSF56349 107 297 2.44E-58 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_0920 e23dede0e8320359d4257ade491ec939 299 Gene3D G3DSA:1.10.443.10 111 293 2.5E-79 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_0920 e23dede0e8320359d4257ade491ec939 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 2.8E-24 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 YPK_0920 e23dede0e8320359d4257ade491ec939 299 SUPERFAMILY SSF47823 5 101 1.29E-36 T 12-10-2018 YPK_4027 4990f90bbc7559b5a0313b06b072b9ee 245 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 44 244 45.584 T 12-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 YPK_4027 4990f90bbc7559b5a0313b06b072b9ee 245 Pfam PF00583 Acetyltransferase (GNAT) family 149 230 6.4E-14 T 12-10-2018 IPR000182 GNAT domain YPK_4027 4990f90bbc7559b5a0313b06b072b9ee 245 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 44 244 2.1E-108 T 12-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 YPK_4027 4990f90bbc7559b5a0313b06b072b9ee 245 Gene3D G3DSA:3.40.630.30 1 244 5.4E-69 T 12-10-2018 YPK_4027 4990f90bbc7559b5a0313b06b072b9ee 245 SUPERFAMILY SSF55729 43 238 1.17E-27 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_0321 7379f7332f1a3cdbaf63dff970b8d0c3 273 SUPERFAMILY SSF53223 4 102 2.24E-31 T 12-10-2018 YPK_0321 7379f7332f1a3cdbaf63dff970b8d0c3 273 Gene3D G3DSA:3.40.50.10860 6 255 1.8E-85 T 12-10-2018 YPK_0321 7379f7332f1a3cdbaf63dff970b8d0c3 273 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 5 271 3.2E-96 T 12-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 YPK_0321 7379f7332f1a3cdbaf63dff970b8d0c3 273 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 270 33.12 T 12-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 YPK_0321 7379f7332f1a3cdbaf63dff970b8d0c3 273 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 120 191 1.0E-10 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPK_0321 7379f7332f1a3cdbaf63dff970b8d0c3 273 SUPERFAMILY SSF51735 103 269 6.27E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0321 7379f7332f1a3cdbaf63dff970b8d0c3 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 2.9E-25 T 12-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 YPK_0321 7379f7332f1a3cdbaf63dff970b8d0c3 273 Gene3D G3DSA:3.40.50.720 103 245 1.8E-85 T 12-10-2018 YPK_3231 0c91d7bdf91020d7d178a60d53c866bf 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.3E-32 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_3231 0c91d7bdf91020d7d178a60d53c866bf 90 Gene3D G3DSA:4.10.520.10 1 90 3.3E-36 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_3231 0c91d7bdf91020d7d178a60d53c866bf 90 SUPERFAMILY SSF47729 1 90 9.13E-32 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_3231 0c91d7bdf91020d7d178a60d53c866bf 90 SMART SM00411 1 90 2.5E-43 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_3231 0c91d7bdf91020d7d178a60d53c866bf 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.2E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_3231 0c91d7bdf91020d7d178a60d53c866bf 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.2E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_3231 0c91d7bdf91020d7d178a60d53c866bf 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.2E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_3231 0c91d7bdf91020d7d178a60d53c866bf 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 YPK_1271 5d49eef17c0ea6c35b1ccf5da52db72f 224 PIRSF PIRSF008159 7 224 3.1E-76 T 12-10-2018 IPR016537 Uncharacterised conserved protein UCP008159, YPK_1271 5d49eef17c0ea6c35b1ccf5da52db72f 224 Pfam PF06226 Protein of unknown function (DUF1007) 22 223 4.5E-64 T 12-10-2018 IPR010412 Protein of unknown function DUF1007 YPK_4052 99529294db5027b3527effe8b96132a3 293 Gene3D G3DSA:3.40.190.10 90 290 1.9E-30 T 12-10-2018 YPK_4052 99529294db5027b3527effe8b96132a3 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4052 99529294db5027b3527effe8b96132a3 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4052 99529294db5027b3527effe8b96132a3 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4052 99529294db5027b3527effe8b96132a3 293 Gene3D G3DSA:3.40.190.10 165 269 1.9E-30 T 12-10-2018 YPK_4052 99529294db5027b3527effe8b96132a3 293 SUPERFAMILY SSF46785 1 111 8.92E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_4052 99529294db5027b3527effe8b96132a3 293 SUPERFAMILY SSF53850 89 293 7.72E-33 T 12-10-2018 YPK_4052 99529294db5027b3527effe8b96132a3 293 Pfam PF03466 LysR substrate binding domain 89 293 1.0E-38 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_4052 99529294db5027b3527effe8b96132a3 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 6.5E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4052 99529294db5027b3527effe8b96132a3 293 Gene3D G3DSA:1.10.10.10 1 83 1.9E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3324 4cb7eb28a36007984ac6f8d12a40cdae 427 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 31 413 1.0E-115 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 YPK_3324 4cb7eb28a36007984ac6f8d12a40cdae 427 Pfam PF01546 Peptidase family M20/M25/M40 84 412 1.4E-26 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 YPK_3324 4cb7eb28a36007984ac6f8d12a40cdae 427 SUPERFAMILY SSF53187 18 413 2.29E-80 T 12-10-2018 YPK_3324 4cb7eb28a36007984ac6f8d12a40cdae 427 Gene3D G3DSA:3.30.70.360 220 334 5.7E-135 T 12-10-2018 YPK_3324 4cb7eb28a36007984ac6f8d12a40cdae 427 Gene3D G3DSA:3.40.630.10 31 409 5.7E-135 T 12-10-2018 YPK_3324 4cb7eb28a36007984ac6f8d12a40cdae 427 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 83 92 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YPK_3324 4cb7eb28a36007984ac6f8d12a40cdae 427 PIRSF PIRSF001235 9 418 5.2E-131 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 YPK_3324 4cb7eb28a36007984ac6f8d12a40cdae 427 SUPERFAMILY SSF55031 220 334 1.5E-25 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 Pfam PF00455 DeoR C terminal sensor domain 76 232 9.9E-54 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 Gene3D G3DSA:1.10.10.10 1 58 9.3E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 2.2E-12 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 2.2E-12 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 SMART SM01134 72 233 8.0E-72 T 12-10-2018 YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 SUPERFAMILY SSF46785 3 73 9.34E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 SMART SM00420 6 58 3.0E-26 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 SUPERFAMILY SSF100950 74 234 1.07E-29 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 Gene3D G3DSA:3.30.750.70 70 133 3.9E-10 T 12-10-2018 YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YPK_0157 dfcc3e33ee9097e856e70e5f4bf905e3 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 6.4E-24 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0446 55f1bc380886033425dbc24fde184994 270 Gene3D G3DSA:3.60.15.10 4 243 2.9E-45 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_0446 55f1bc380886033425dbc24fde184994 270 SMART SM00849 39 239 0.004 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_0446 55f1bc380886033425dbc24fde184994 270 Pfam PF00753 Metallo-beta-lactamase superfamily 41 204 2.5E-13 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_0446 55f1bc380886033425dbc24fde184994 270 SUPERFAMILY SSF56281 31 243 1.07E-27 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_0979 e6efe0543d72250e61459ec00b3a6b5e 360 Gene3D G3DSA:1.10.260.40 1 60 2.6E-9 T 12-10-2018 YPK_0979 e6efe0543d72250e61459ec00b3a6b5e 360 SMART SM00354 4 71 1.9E-4 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0979 e6efe0543d72250e61459ec00b3a6b5e 360 SUPERFAMILY SSF47413 5 59 2.44E-8 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0979 e6efe0543d72250e61459ec00b3a6b5e 360 Pfam PF13377 Periplasmic binding protein-like domain 173 338 1.1E-28 T 12-10-2018 YPK_0979 e6efe0543d72250e61459ec00b3a6b5e 360 SUPERFAMILY SSF53822 75 340 7.07E-42 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0979 e6efe0543d72250e61459ec00b3a6b5e 360 Gene3D G3DSA:3.40.50.2300 75 330 1.5E-45 T 12-10-2018 YPK_0979 e6efe0543d72250e61459ec00b3a6b5e 360 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 47 4.3E-8 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0979 e6efe0543d72250e61459ec00b3a6b5e 360 Gene3D G3DSA:3.40.50.2300 164 335 1.5E-45 T 12-10-2018 YPK_2409 353f42c071bee2a9c97e1f80cc2e9946 525 SMART SM00382 45 241 3.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2409 353f42c071bee2a9c97e1f80cc2e9946 525 Pfam PF00005 ABC transporter 293 447 8.6E-13 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2409 353f42c071bee2a9c97e1f80cc2e9946 525 Gene3D G3DSA:3.40.50.300 268 524 2.2E-40 T 12-10-2018 YPK_2409 353f42c071bee2a9c97e1f80cc2e9946 525 Gene3D G3DSA:3.40.50.300 4 267 5.4E-51 T 12-10-2018 YPK_2409 353f42c071bee2a9c97e1f80cc2e9946 525 SUPERFAMILY SSF52540 287 506 1.63E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2409 353f42c071bee2a9c97e1f80cc2e9946 525 ProSitePatterns PS00211 ABC transporters family signature. 420 434 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2409 353f42c071bee2a9c97e1f80cc2e9946 525 Pfam PF00005 ABC transporter 36 192 3.7E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2409 353f42c071bee2a9c97e1f80cc2e9946 525 SUPERFAMILY SSF52540 21 252 1.57E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0363 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 2.0E-149 T 12-10-2018 YPK_0363 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 PIRSF PIRSF000450 1 308 1.9E-146 T 12-10-2018 IPR033752 MetA family YPK_0363 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 5.4E-157 T 12-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 YPK_0363 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 40.936 T 12-10-2018 IPR033752 MetA family YPK_0363 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 Gene3D G3DSA:3.40.50.880 1 301 4.9E-120 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_0363 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 SUPERFAMILY SSF52317 17 297 3.82E-100 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_0363 428ebe5eb0b0a81c8f9d92bf0f1f8cc6 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 9.1E-132 T 12-10-2018 IPR033752 MetA family YPK_2953 dbb6d1719c1da4db388814988cedf89c 353 Pfam PF02445 Quinolinate synthetase A protein 31 340 5.7E-103 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 YPK_2953 dbb6d1719c1da4db388814988cedf89c 353 Gene3D G3DSA:3.40.50.10800 31 322 2.8E-94 T 12-10-2018 YPK_2953 dbb6d1719c1da4db388814988cedf89c 353 Gene3D G3DSA:3.40.50.10800 115 340 2.8E-94 T 12-10-2018 YPK_2953 dbb6d1719c1da4db388814988cedf89c 353 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 1.1E-120 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 YPK_2953 dbb6d1719c1da4db388814988cedf89c 353 SUPERFAMILY SSF142754 29 341 3.79E-106 T 12-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 YPK_2953 dbb6d1719c1da4db388814988cedf89c 353 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 70.871 T 12-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 YPK_2953 dbb6d1719c1da4db388814988cedf89c 353 Gene3D G3DSA:3.40.50.10800 200 295 2.8E-94 T 12-10-2018 YPK_2878 a4ff13f13a2e02792d3d04682fb18b78 278 Pfam PF00005 ABC transporter 41 202 1.1E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2878 a4ff13f13a2e02792d3d04682fb18b78 278 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 25 269 2.2E-91 T 12-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 YPK_2878 a4ff13f13a2e02792d3d04682fb18b78 278 SUPERFAMILY SSF52540 24 261 1.45E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2878 a4ff13f13a2e02792d3d04682fb18b78 278 Gene3D G3DSA:3.40.50.300 21 272 1.0E-61 T 12-10-2018 YPK_2878 a4ff13f13a2e02792d3d04682fb18b78 278 SMART SM00382 50 258 1.2E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2878 a4ff13f13a2e02792d3d04682fb18b78 278 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Gene3D G3DSA:1.10.287.970 1 89 1.7E-38 T 12-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Pfam PF01627 Hpt domain 686 769 8.5E-14 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SUPERFAMILY SSF47226 661 773 7.98E-31 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SUPERFAMILY SSF55874 336 505 7.2E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 3.1E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 3.1E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 3.1E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 3.1E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Gene3D G3DSA:1.10.287.130 267 345 2.3E-21 T 12-10-2018 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Gene3D G3DSA:1.20.120.160 656 778 1.8E-31 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SUPERFAMILY SSF55785 143 267 6.46E-21 T 12-10-2018 IPR035965 PAS domain superfamily YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SMART SM00073 675 772 1.0E-16 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Gene3D G3DSA:3.30.565.10 348 509 7.2E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SMART SM00387 394 507 3.1E-36 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Gene3D G3DSA:3.30.450.20 152 266 4.6E-19 T 12-10-2018 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SUPERFAMILY SSF47384 269 347 9.42E-17 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SMART SM00091 155 221 9.7E-8 T 12-10-2018 IPR000014 PAS domain YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SMART SM00448 525 638 3.0E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 276 2.1E-15 T 12-10-2018 IPR000014 PAS domain YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Pfam PF00072 Response regulator receiver domain 527 638 8.4E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 505 5.5E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 PIRSF PIRSF003182 1 778 0.0 T 12-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SUPERFAMILY SSF52172 525 648 3.42E-30 T 12-10-2018 IPR011006 CheY-like superfamily YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 SMART SM00388 282 347 5.6E-18 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 8.6E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Gene3D G3DSA:3.40.50.2300 510 646 1.8E-33 T 12-10-2018 YPK_0533 2f27cc3eab623b525666eaff88e5f9dc 778 Pfam PF00989 PAS fold 157 266 6.5E-17 T 12-10-2018 IPR013767 PAS fold GO:0006355 YPK_3872 7d0f1f75ad0ecfea0514ba015ca1f8fa 191 Pfam PF02342 TerD domain 1 187 2.3E-84 T 12-10-2018 IPR003325 TerD domain YPK_3872 7d0f1f75ad0ecfea0514ba015ca1f8fa 191 Gene3D G3DSA:2.60.60.30 20 186 7.1E-75 T 12-10-2018 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 152 4.1E-62 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 Gene3D G3DSA:3.30.1360.80 1 171 1.9E-73 T 12-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 2.1E-50 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 2.1E-50 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 2.1E-50 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 2.1E-50 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 2.1E-50 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 PIRSF PIRSF006160 1 162 6.0E-67 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 155 2.0E-84 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.725 T 12-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3368 a13cdff49cc1c2efd247d8f22a1b50f9 171 SUPERFAMILY SSF63411 4 162 1.19E-67 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YPK_2168 f9426d5fdafbeaec7d447bb76ddc521e 355 Pfam PF00005 ABC transporter 21 161 1.6E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2168 f9426d5fdafbeaec7d447bb76ddc521e 355 Gene3D G3DSA:3.40.50.300 1 238 3.4E-71 T 12-10-2018 YPK_2168 f9426d5fdafbeaec7d447bb76ddc521e 355 SUPERFAMILY SSF52540 4 240 3.87E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2168 f9426d5fdafbeaec7d447bb76ddc521e 355 SMART SM00382 28 211 1.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2168 f9426d5fdafbeaec7d447bb76ddc521e 355 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2660 fde537e3711c34f9bb5bc0357722fa5e 250 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 1.6E-123 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 YPK_2660 fde537e3711c34f9bb5bc0357722fa5e 250 Gene3D G3DSA:3.90.550.10 1 250 1.3E-100 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2660 fde537e3711c34f9bb5bc0357722fa5e 250 SUPERFAMILY SSF53448 3 247 4.51E-67 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2660 fde537e3711c34f9bb5bc0357722fa5e 250 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 45.648 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 YPK_2660 fde537e3711c34f9bb5bc0357722fa5e 250 Pfam PF02348 Cytidylyltransferase 4 221 4.6E-68 T 12-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 YPK_1981 e091f453d629023d18ff32bc28ec49e1 405 Gene3D G3DSA:3.30.420.40 209 377 1.1E-89 T 12-10-2018 YPK_1981 e091f453d629023d18ff32bc28ec49e1 405 Gene3D G3DSA:3.30.420.40 92 382 1.1E-89 T 12-10-2018 YPK_1981 e091f453d629023d18ff32bc28ec49e1 405 Pfam PF00480 ROK family 96 389 1.8E-49 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_1981 e091f453d629023d18ff32bc28ec49e1 405 SUPERFAMILY SSF53067 88 394 4.51E-43 T 12-10-2018 YPK_1981 e091f453d629023d18ff32bc28ec49e1 405 Gene3D G3DSA:1.10.10.10 1 82 5.1E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1981 e091f453d629023d18ff32bc28ec49e1 405 SUPERFAMILY SSF46785 12 77 1.23E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Gene3D G3DSA:1.20.150.20 383 513 2.5E-50 T 12-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 SUPERFAMILY SSF47917 383 511 1.36E-45 T 12-10-2018 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 6.2E-261 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 SUPERFAMILY SSF52540 96 381 1.32E-95 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 6.3E-74 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 SUPERFAMILY SSF50615 10 94 5.1E-26 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.111 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Gene3D G3DSA:2.40.30.20 1 93 8.2E-30 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Gene3D G3DSA:3.40.50.300 94 382 6.8E-133 T 12-10-2018 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 2.5E-13 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_4224 edbe09ab3a2d3fd2e928c9ae7c2f1ffb 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 2.4E-45 T 12-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_0516 04ef9042f43a0fee95eb20210ee798f3 100 Gene3D G3DSA:3.30.750.24 12 100 3.5E-12 T 12-10-2018 IPR036513 STAS domain superfamily YPK_0516 04ef9042f43a0fee95eb20210ee798f3 100 Pfam PF13466 STAS domain 14 91 8.8E-19 T 12-10-2018 IPR002645 STAS domain YPK_0516 04ef9042f43a0fee95eb20210ee798f3 100 SUPERFAMILY SSF52091 13 96 1.04E-16 T 12-10-2018 IPR036513 STAS domain superfamily YPK_0834 b7602887d5e61b5569c51013b92a5d08 371 SUPERFAMILY SSF55909 13 370 3.03E-139 T 12-10-2018 YPK_0834 b7602887d5e61b5569c51013b92a5d08 371 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 24 369 4.4E-121 T 12-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 YPK_0834 b7602887d5e61b5569c51013b92a5d08 371 Hamap MF_01841 Agmatine deiminase [aguA]. 15 370 59.51 T 12-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 YPK_0834 b7602887d5e61b5569c51013b92a5d08 371 Gene3D G3DSA:3.75.10.10 12 371 5.3E-139 T 12-10-2018 YPK_0834 b7602887d5e61b5569c51013b92a5d08 371 TIGRFAM TIGR03380 agmatine_aguA: agmatine deiminase 16 370 1.1E-175 T 12-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 YPK_0975 2ebb4c009de3b6708fc8fab998b43a70 419 Gene3D G3DSA:2.40.170.10 27 419 1.5E-112 T 12-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 YPK_0975 2ebb4c009de3b6708fc8fab998b43a70 419 SUPERFAMILY SSF56935 27 419 2.44E-109 T 12-10-2018 YPK_0975 2ebb4c009de3b6708fc8fab998b43a70 419 Hamap MF_01301 Maltoporin [lamB]. 2 419 44.712 T 12-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 YPK_0975 2ebb4c009de3b6708fc8fab998b43a70 419 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 34 414 0.0 T 12-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 YPK_0975 2ebb4c009de3b6708fc8fab998b43a70 419 Pfam PF02264 LamB porin 29 419 2.8E-107 T 12-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 YPK_0161 505118b3ce580cb9b487982574519c80 801 Pfam PF00343 Carbohydrate phosphorylase 94 798 0.0 T 12-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YPK_0161 505118b3ce580cb9b487982574519c80 801 PIRSF PIRSF000460 2 801 7.8E-209 T 12-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YPK_0161 505118b3ce580cb9b487982574519c80 801 SUPERFAMILY SSF53756 7 799 1.41E-293 T 12-10-2018 YPK_0161 505118b3ce580cb9b487982574519c80 801 Gene3D G3DSA:3.40.50.2000 61 798 0.0 T 12-10-2018 YPK_0161 505118b3ce580cb9b487982574519c80 801 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 12 798 0.0 T 12-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YPK_0161 505118b3ce580cb9b487982574519c80 801 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 643 655 - T 12-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YPK_0161 505118b3ce580cb9b487982574519c80 801 Gene3D G3DSA:3.40.50.2000 457 784 0.0 T 12-10-2018 YPK_1687 6921b6e3b114446f07f2df933b9c9d46 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 3.9E-37 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 YPK_1687 6921b6e3b114446f07f2df933b9c9d46 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 7.7E-16 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain YPK_1687 6921b6e3b114446f07f2df933b9c9d46 78 Gene3D G3DSA:1.10.1200.10 1 76 5.4E-29 T 12-10-2018 IPR036736 ACP-like superfamily YPK_1687 6921b6e3b114446f07f2df933b9c9d46 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.174 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 YPK_1687 6921b6e3b114446f07f2df933b9c9d46 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 0.003 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 YPK_1687 6921b6e3b114446f07f2df933b9c9d46 78 SUPERFAMILY SSF47336 2 76 1.09E-23 T 12-10-2018 IPR036736 ACP-like superfamily YPK_1687 6921b6e3b114446f07f2df933b9c9d46 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site YPK_0660 b4dd49c4bfcd045a79d2865c513f8d91 303 SUPERFAMILY SSF46785 3 112 2.37E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0660 b4dd49c4bfcd045a79d2865c513f8d91 303 Pfam PF03466 LysR substrate binding domain 91 292 5.5E-36 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_0660 b4dd49c4bfcd045a79d2865c513f8d91 303 Gene3D G3DSA:3.40.190.10 93 290 8.2E-60 T 12-10-2018 YPK_0660 b4dd49c4bfcd045a79d2865c513f8d91 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.9E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0660 b4dd49c4bfcd045a79d2865c513f8d91 303 Gene3D G3DSA:1.10.10.10 3 88 7.7E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0660 b4dd49c4bfcd045a79d2865c513f8d91 303 SUPERFAMILY SSF53850 91 294 2.17E-37 T 12-10-2018 YPK_0660 b4dd49c4bfcd045a79d2865c513f8d91 303 Gene3D G3DSA:3.40.190.10 164 264 8.2E-60 T 12-10-2018 YPK_3901 618f9ff72138d3366b3d2d895f17c5da 97 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 14 92 6.3E-31 T 12-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 YPK_3901 618f9ff72138d3366b3d2d895f17c5da 97 Pfam PF01313 Bacterial export proteins, family 3 14 86 5.1E-26 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_3901 618f9ff72138d3366b3d2d895f17c5da 97 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 26 47 4.0E-24 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_3901 618f9ff72138d3366b3d2d895f17c5da 97 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 47 62 4.0E-24 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_3901 618f9ff72138d3366b3d2d895f17c5da 97 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 62 84 4.0E-24 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_3901 618f9ff72138d3366b3d2d895f17c5da 97 PIRSF PIRSF004669 9 96 4.0E-25 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 SUPERFAMILY SSF52172 4 136 1.99E-35 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1384 9e86a45d9e947a3f940d44d702785045 209 Pfam PF00072 Response regulator receiver domain 7 118 3.4E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 2.0E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 SUPERFAMILY SSF46894 129 207 4.08E-22 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 Gene3D G3DSA:3.40.50.12740 6 207 4.7E-68 T 12-10-2018 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 SMART SM00448 5 118 4.0E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 5.2E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 5.2E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 5.2E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 SMART SM00421 146 203 1.3E-24 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1384 9e86a45d9e947a3f940d44d702785045 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 SMART SM00382 59 230 1.1E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3375 a349d14299f68b80755c3040a235e6ea 356 SUPERFAMILY SSF54752 272 327 1.96E-20 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal YPK_3375 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 212 240 1.2E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 129 158 1.2E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 299 316 1.2E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 167 196 1.2E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 245 274 1.2E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 PRINTS PR00142 RecA protein signature 95 124 1.2E-84 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 Hamap MF_00268 Protein RecA [recA]. 7 331 50.697 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 Gene3D G3DSA:3.40.50.300 28 269 3.2E-81 T 12-10-2018 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 Pfam PF00154 recA bacterial DNA recombination protein 9 270 8.3E-141 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 3.2E-170 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 YPK_3375 a349d14299f68b80755c3040a235e6ea 356 Gene3D G3DSA:3.30.250.10 271 329 1.0E-25 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal YPK_3375 a349d14299f68b80755c3040a235e6ea 356 SUPERFAMILY SSF52540 6 269 5.12E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3375 a349d14299f68b80755c3040a235e6ea 356 ProSitePatterns PS00321 recA signature. 215 223 - T 12-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 Pfam PF00654 Voltage gated chloride channel 77 416 2.3E-76 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 PRINTS PR00762 Chloride channel signature 383 402 4.1E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 PRINTS PR00762 Chloride channel signature 166 185 4.1E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 PRINTS PR00762 Chloride channel signature 330 350 4.1E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 PRINTS PR00762 Chloride channel signature 365 381 4.1E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 PRINTS PR00762 Chloride channel signature 116 135 4.1E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 Gene3D G3DSA:1.10.3080.10 13 426 1.2E-76 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 Hamap MF_01203 Voltage-gated ClC-type chloride channel ClcB [clcB]. 16 426 40.373 T 12-10-2018 IPR023790 Chloride channel, voltage-gated, ClcB GO:0006821|GO:0010447 YPK_1979 05fe27e1bd6fdd207cf490a8c765c039 426 SUPERFAMILY SSF81340 5 425 3.92E-87 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 YPK_3042 ac6e7b6c9191e90223eca0e36570b88a 377 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 130 1.5E-23 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YPK_3042 ac6e7b6c9191e90223eca0e36570b88a 377 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 258 3.0E-6 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 YPK_3042 ac6e7b6c9191e90223eca0e36570b88a 377 Gene3D G3DSA:3.40.50.720 1 131 3.0E-36 T 12-10-2018 YPK_3042 ac6e7b6c9191e90223eca0e36570b88a 377 Gene3D G3DSA:3.30.360.10 132 373 2.6E-63 T 12-10-2018 YPK_3042 ac6e7b6c9191e90223eca0e36570b88a 377 SUPERFAMILY SSF51735 4 158 2.04E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3042 ac6e7b6c9191e90223eca0e36570b88a 377 SUPERFAMILY SSF55347 135 323 1.08E-32 T 12-10-2018 YPK_1983 680afeb41c74f924d892a4ebb6b722a4 432 ProSitePatterns PS00216 Sugar transport proteins signature 1. 103 119 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YPK_1983 680afeb41c74f924d892a4ebb6b722a4 432 Pfam PF07690 Major Facilitator Superfamily 53 272 3.3E-27 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_1983 680afeb41c74f924d892a4ebb6b722a4 432 Gene3D G3DSA:1.20.1250.20 43 426 3.2E-46 T 12-10-2018 YPK_1983 680afeb41c74f924d892a4ebb6b722a4 432 SUPERFAMILY SSF103473 32 425 1.83E-62 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3501 6e8aaaefb5aacf41f9412dd8ea577aea 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 12-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 YPK_3501 6e8aaaefb5aacf41f9412dd8ea577aea 347 SMART SM01240 7 344 5.1E-139 T 12-10-2018 YPK_3501 6e8aaaefb5aacf41f9412dd8ea577aea 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 9.7E-198 T 12-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 YPK_3501 6e8aaaefb5aacf41f9412dd8ea577aea 347 SUPERFAMILY SSF51412 7 335 3.53E-100 T 12-10-2018 YPK_3501 6e8aaaefb5aacf41f9412dd8ea577aea 347 PIRSF PIRSF000235 1 347 2.5E-200 T 12-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 YPK_3501 6e8aaaefb5aacf41f9412dd8ea577aea 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 50.526 T 12-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 YPK_3501 6e8aaaefb5aacf41f9412dd8ea577aea 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 9.4E-79 T 12-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 YPK_3501 6e8aaaefb5aacf41f9412dd8ea577aea 347 Gene3D G3DSA:3.20.20.70 1 345 9.5E-116 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2531 63fb923e757e0277e7eebefde6ee38a5 258 Pfam PF00977 Histidine biosynthesis protein 5 239 1.8E-76 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 YPK_2531 63fb923e757e0277e7eebefde6ee38a5 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 43.899 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 YPK_2531 63fb923e757e0277e7eebefde6ee38a5 258 Gene3D G3DSA:3.20.20.70 1 258 6.8E-91 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2531 63fb923e757e0277e7eebefde6ee38a5 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 9.6E-114 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 YPK_2531 63fb923e757e0277e7eebefde6ee38a5 258 SUPERFAMILY SSF51366 1 257 5.49E-72 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 40 502 5.0E-186 T 12-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 Pfam PF03958 Bacterial type II/III secretion system short domain 187 279 8.6E-19 T 12-10-2018 IPR005644 NolW-like YPK_3917 7348f0b85b06d02530273b4bbe038520 505 Gene3D G3DSA:3.55.50.30 29 111 6.7E-23 T 12-10-2018 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 Gene3D G3DSA:3.30.1370.120 183 277 1.3E-12 T 12-10-2018 IPR038591 NolW-like superfamily YPK_3917 7348f0b85b06d02530273b4bbe038520 505 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 355 374 7.4E-39 T 12-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 199 216 7.4E-39 T 12-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 281 301 7.4E-39 T 12-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 389 404 7.4E-39 T 12-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 480 499 7.4E-39 T 12-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 Pfam PF00263 Bacterial type II and III secretion system protein 342 498 2.8E-35 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 447 480 - T 12-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 YPK_3917 7348f0b85b06d02530273b4bbe038520 505 Gene3D G3DSA:3.30.1370.120 113 180 1.7E-24 T 12-10-2018 IPR038591 NolW-like superfamily YPK_1893 416c979727886b6d0da014313ab6a5f6 342 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 327 3.4E-163 T 12-10-2018 IPR014317 Transcription activator PspF YPK_1893 416c979727886b6d0da014313ab6a5f6 342 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 293 310 5.0E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 310 330 5.0E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 Gene3D G3DSA:1.10.10.60 264 330 5.9E-8 T 12-10-2018 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YPK_1893 416c979727886b6d0da014313ab6a5f6 342 Gene3D G3DSA:1.10.8.60 180 263 5.0E-27 T 12-10-2018 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 Pfam PF02954 Bacterial regulatory protein, Fis family 290 326 2.3E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 SUPERFAMILY SSF46689 222 329 1.57E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 SMART SM00382 28 171 1.1E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1893 416c979727886b6d0da014313ab6a5f6 342 Pfam PF00158 Sigma-54 interaction domain 9 170 5.4E-60 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 Gene3D G3DSA:3.40.50.300 1 179 1.3E-56 T 12-10-2018 YPK_1893 416c979727886b6d0da014313ab6a5f6 342 SUPERFAMILY SSF52540 8 245 2.3E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 Gene3D G3DSA:3.40.50.2030 234 379 7.8E-60 T 12-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 PIRSF PIRSF000076 1 550 3.8E-241 T 12-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 549 20.695 T 12-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 Gene3D G3DSA:1.20.1270.20 149 232 3.5E-28 T 12-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 Pfam PF03063 Prismane/CO dehydrogenase family 1 545 8.7E-160 T 12-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 SUPERFAMILY SSF56821 1 549 3.51E-188 T 12-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 Gene3D G3DSA:3.40.50.2030 380 548 5.7E-59 T 12-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 Gene3D G3DSA:1.20.1270.20 1 139 2.1E-35 T 12-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 YPK_2701 e0433c2ba176a57cd63eea570cbaf217 550 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 548 4.8E-250 T 12-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 YPK_0223 1559d08558f6302e8eab3659db1ca090 142 Pfam PF10748 Protein of unknown function (DUF2531) 49 121 5.9E-6 T 12-10-2018 IPR019684 HofP protein YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF54980 612 697 2.27E-29 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Hamap MF_00054_B Elongation factor G [fusA]. 6 700 113.937 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF52540 6 287 2.97E-106 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF03764 Elongation factor G, domain IV 486 607 1.3E-48 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:3.30.70.240 613 683 1.5E-89 T 12-10-2018 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 701 0.0 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:3.40.50.300 1 303 3.8E-116 T 12-10-2018 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:2.40.30.10 304 411 1.8E-44 T 12-10-2018 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:3.30.70.870 412 487 1.3E-32 T 12-10-2018 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 6.4E-67 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Gene3D G3DSA:3.30.230.10 491 695 1.5E-89 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF14492 Elongation Factor G, domain II 411 485 9.8E-34 T 12-10-2018 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 SMART SM00838 609 696 2.3E-58 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF50447 271 411 1.63E-35 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF54211 486 608 7.84E-43 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 SUPERFAMILY SSF54980 409 487 1.73E-25 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 5.6E-32 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF00679 Elongation factor G C-terminus 609 694 2.0E-31 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 SMART SM00889 487 607 7.2E-76 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 Pfam PF03144 Elongation factor Tu domain 2 331 398 1.9E-17 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0277 407d907f20d548e759cca53cd1b32bbb 702 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0037 a6a9d030044b5bb8b9a8d19990b45e86 195 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YPK_0037 a6a9d030044b5bb8b9a8d19990b45e86 195 SUPERFAMILY SSF53706 36 195 8.9E-58 T 12-10-2018 YPK_0037 a6a9d030044b5bb8b9a8d19990b45e86 195 SMART SM00926 43 104 4.1E-22 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_0037 a6a9d030044b5bb8b9a8d19990b45e86 195 Pfam PF00384 Molybdopterin oxidoreductase 107 145 1.9E-6 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_0037 a6a9d030044b5bb8b9a8d19990b45e86 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 103 1.7E-19 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_0037 a6a9d030044b5bb8b9a8d19990b45e86 195 Gene3D G3DSA:2.20.25.90 44 105 1.5E-16 T 12-10-2018 YPK_0037 a6a9d030044b5bb8b9a8d19990b45e86 195 Gene3D G3DSA:3.40.50.740 107 195 2.1E-35 T 12-10-2018 YPK_3076 2a735456384e18c8d56002056055c34a 329 SUPERFAMILY SSF51430 1 314 1.19E-101 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_3076 2a735456384e18c8d56002056055c34a 329 Pfam PF00248 Aldo/keto reductase family 16 308 1.5E-73 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain YPK_3076 2a735456384e18c8d56002056055c34a 329 Gene3D G3DSA:3.20.20.100 1 328 5.8E-118 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_2691 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.1E-27 T 12-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 YPK_2691 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SMART SM00316 4 72 4.3E-7 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_2691 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Gene3D G3DSA:2.40.50.140 1 72 9.2E-36 T 12-10-2018 YPK_2691 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SUPERFAMILY SSF50249 1 70 1.18E-28 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2691 25ddc8d907d8c6cdf9a50a3e27ba432a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.3E-38 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 YPK_2691 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.17 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 YPK_2221 14351f3247823fcb1c4271129ce38344 255 SUPERFAMILY SSF46785 19 88 1.51E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2221 14351f3247823fcb1c4271129ce38344 255 Pfam PF07702 UTRA domain 105 242 1.6E-35 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YPK_2221 14351f3247823fcb1c4271129ce38344 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 2.2E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2221 14351f3247823fcb1c4271129ce38344 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 2.2E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2221 14351f3247823fcb1c4271129ce38344 255 SMART SM00345 25 84 2.1E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2221 14351f3247823fcb1c4271129ce38344 255 Gene3D G3DSA:1.10.10.10 19 88 3.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2221 14351f3247823fcb1c4271129ce38344 255 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 20 249 1.1E-107 T 12-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 YPK_2221 14351f3247823fcb1c4271129ce38344 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 2.3E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2221 14351f3247823fcb1c4271129ce38344 255 SUPERFAMILY SSF64288 72 248 1.29E-43 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_2221 14351f3247823fcb1c4271129ce38344 255 SMART SM00866 105 242 4.2E-33 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YPK_2221 14351f3247823fcb1c4271129ce38344 255 Gene3D G3DSA:3.40.1410.10 103 238 1.9E-35 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_1403 283f5b102757815f79fd00a08b925a8a 323 Gene3D G3DSA:3.80.10.10 25 86 1.6E-8 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily YPK_1403 283f5b102757815f79fd00a08b925a8a 323 Gene3D G3DSA:3.80.10.10 87 219 1.9E-25 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily YPK_1403 283f5b102757815f79fd00a08b925a8a 323 SMART SM00364 62 81 86.0 T 12-10-2018 YPK_1403 283f5b102757815f79fd00a08b925a8a 323 SMART SM00364 82 101 73.0 T 12-10-2018 YPK_1403 283f5b102757815f79fd00a08b925a8a 323 SMART SM00364 143 162 0.059 T 12-10-2018 YPK_1403 283f5b102757815f79fd00a08b925a8a 323 SMART SM00364 164 183 6.4 T 12-10-2018 YPK_1403 283f5b102757815f79fd00a08b925a8a 323 SMART SM00364 123 142 0.056 T 12-10-2018 YPK_1403 283f5b102757815f79fd00a08b925a8a 323 Pfam PF12468 Type III secretion system leucine rich repeat protein 6 55 1.3E-10 T 12-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YPK_1403 283f5b102757815f79fd00a08b925a8a 323 Gene3D G3DSA:1.20.1270.130 232 319 7.6E-9 T 12-10-2018 YPK_1403 283f5b102757815f79fd00a08b925a8a 323 SUPERFAMILY SSF52058 62 227 2.72E-22 T 12-10-2018 YPK_1609 ad3413bc8d62415c4145b144d7a8111a 220 Pfam PF16809 NleF caspase inhibitor 45 176 1.1E-22 T 12-10-2018 IPR031829 Effector protein NleF YPK_1609 ad3413bc8d62415c4145b144d7a8111a 220 Gene3D G3DSA:1.20.1260.90 46 186 5.3E-10 T 12-10-2018 IPR038334 NleF superfamily YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 SUPERFAMILY SSF56053 1 82 1.11E-23 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.8E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.8E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.8E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 PIRSF PIRSF002162 1 177 2.5E-44 T 12-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.7E-73 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 12-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 Gene3D G3DSA:3.90.930.12 1 82 1.3E-30 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 Pfam PF00347 Ribosomal protein L6 90 164 6.6E-19 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 Pfam PF00347 Ribosomal protein L6 11 82 2.3E-19 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.759 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 SUPERFAMILY SSF56053 83 177 9.08E-36 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0298 094b25a8e5a03f5cf60c4282e3fe4213 177 Gene3D G3DSA:3.90.930.12 83 177 9.7E-40 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 Pfam PF02811 PHP domain 19 182 1.1E-43 T 12-10-2018 IPR004013 PHP domain GO:0003824 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 Gene3D G3DSA:3.20.20.140 4 281 7.0E-95 T 12-10-2018 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 302 745 2.7E-177 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 Gene3D G3DSA:1.10.150.870 788 897 4.7E-5 T 12-10-2018 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 Pfam PF14579 Helix-hairpin-helix motif 819 908 5.3E-25 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 SMART SM00481 18 85 1.4E-29 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPK_1081 b991842fa0b5b04758a49372329c799a 1171 Pfam PF01336 OB-fold nucleic acid binding domain 1011 1082 1.4E-7 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 Gene3D G3DSA:1.10.10.1600 444 521 3.8E-34 T 12-10-2018 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 SUPERFAMILY SSF89550 17 274 6.67E-18 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 17 1042 0.0 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_1081 b991842fa0b5b04758a49372329c799a 1171 Gene3D G3DSA:2.40.50.140 993 1085 2.0E-5 T 12-10-2018 YPK_1543 1e5579ad7995fdb2eeadcfd4608b2697 230 SUPERFAMILY SSF141868 12 226 5.1E-21 T 12-10-2018 IPR035919 EAL domain superfamily YPK_1543 1e5579ad7995fdb2eeadcfd4608b2697 230 SMART SM00052 1 223 9.1E-6 T 12-10-2018 IPR001633 EAL domain YPK_1543 1e5579ad7995fdb2eeadcfd4608b2697 230 Pfam PF00563 EAL domain 14 218 9.7E-14 T 12-10-2018 IPR001633 EAL domain YPK_1543 1e5579ad7995fdb2eeadcfd4608b2697 230 Gene3D G3DSA:3.20.20.450 1 227 1.0E-41 T 12-10-2018 IPR035919 EAL domain superfamily YPK_2319 3883f8b95f88318683ae77a912164304 217 Pfam PF00929 Exonuclease 46 207 8.4E-19 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_2319 3883f8b95f88318683ae77a912164304 217 SMART SM00479 44 217 2.0E-34 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_2319 3883f8b95f88318683ae77a912164304 217 Gene3D G3DSA:3.30.420.10 39 216 3.9E-39 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_2319 3883f8b95f88318683ae77a912164304 217 SUPERFAMILY SSF53098 44 213 4.64E-36 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_1165 149f815cc33abc0374dc5c469f5a1f4b 248 SUPERFAMILY SSF102705 2 247 8.24E-83 T 12-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily YPK_1165 149f815cc33abc0374dc5c469f5a1f4b 248 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 2 247 8.4E-70 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YPK_1165 149f815cc33abc0374dc5c469f5a1f4b 248 Gene3D G3DSA:3.40.1390.30 15 233 3.3E-86 T 12-10-2018 YPK_1165 149f815cc33abc0374dc5c469f5a1f4b 248 Gene3D G3DSA:3.40.1390.30 98 219 3.3E-86 T 12-10-2018 YPK_1165 149f815cc33abc0374dc5c469f5a1f4b 248 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 234 8.0E-57 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Gene3D G3DSA:3.90.740.10 211 372 2.9E-49 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 PRINTS PR00986 Valyl-tRNA synthetase signature 514 532 2.1E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 PRINTS PR00986 Valyl-tRNA synthetase signature 483 504 2.1E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 PRINTS PR00986 Valyl-tRNA synthetase signature 383 396 2.1E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 PRINTS PR00986 Valyl-tRNA synthetase signature 250 267 2.1E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 PRINTS PR00986 Valyl-tRNA synthetase signature 49 60 2.1E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 SUPERFAMILY SSF46589 898 962 7.32E-16 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 SUPERFAMILY SSF47323 656 913 4.86E-72 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Hamap MF_02004 Valine--tRNA ligase [valS]. 15 963 16.213 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Gene3D G3DSA:1.10.287.380 891 963 4.0E-19 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Pfam PF08264 Anticodon-binding domain of tRNA 688 839 1.2E-43 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 SUPERFAMILY SSF52374 14 655 6.05E-137 T 12-10-2018 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Gene3D G3DSA:1.10.730.10 593 831 1.1E-72 T 12-10-2018 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 900 958 5.5E-17 T 12-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 TIGRFAM TIGR00422 valS: valine--tRNA ligase 16 945 0.0 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Gene3D G3DSA:3.40.50.620 373 592 4.2E-59 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Gene3D G3DSA:3.40.50.620 16 210 2.5E-64 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 SUPERFAMILY SSF50677 205 379 1.44E-57 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 645 6.9E-231 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3681 a0dc2735c841714538ed3038fc5ef0a4 965 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 56 67 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_4042 6976622be8ba9e18b7411adcfe80511a 176 Gene3D G3DSA:2.60.40.1090 24 175 2.2E-24 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_4042 6976622be8ba9e18b7411adcfe80511a 176 Pfam PF16970 Type-1 fimbrial protein, A 52 175 4.2E-8 T 12-10-2018 IPR039458 Type-1 fimbrial protein, A YPK_4042 6976622be8ba9e18b7411adcfe80511a 176 SUPERFAMILY SSF49401 25 175 1.29E-21 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 222 243 4.6E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 246 271 4.6E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 74 93 4.6E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 93 113 4.6E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 113 132 4.6E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 201 221 4.6E-67 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 201 216 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 249 261 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 Pfam PF00813 FliP family 77 268 4.9E-77 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 76 272 1.4E-92 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 144 158 2.1E-31 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 262 272 2.1E-31 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 132 144 2.1E-31 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 194 206 2.1E-31 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 172 184 2.1E-31 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_2402 3c565f6ea2ca284ab394824398b4ecbf 274 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 72 81 2.1E-31 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_1951 ab6b2df92439dd5a6f316590398ca835 264 Pfam PF07313 Protein of unknown function (DUF1460) 59 256 2.8E-78 T 12-10-2018 IPR010846 Protein of unknown function DUF1460 YPK_1951 ab6b2df92439dd5a6f316590398ca835 264 SUPERFAMILY SSF54001 33 264 4.12E-81 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YPK_1951 ab6b2df92439dd5a6f316590398ca835 264 Gene3D G3DSA:1.10.3670.10 49 172 8.0E-24 T 12-10-2018 YPK_1951 ab6b2df92439dd5a6f316590398ca835 264 Gene3D G3DSA:2.30.260.10 173 264 2.6E-21 T 12-10-2018 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 Pfam PF00574 Clp protease 25 205 2.1E-88 T 12-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 SUPERFAMILY SSF52096 23 206 8.08E-74 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 14 205 1.5E-108 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 12-10-2018 IPR033135 ClpP, histidine active site YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 43.839 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 2.4E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 2.4E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 2.4E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 2.4E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 2.4E-52 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 Gene3D G3DSA:3.90.226.10 6 207 8.2E-84 T 12-10-2018 YPK_3234 362ac2313fc273dfaa85f46876b919bc 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 12-10-2018 IPR018215 ClpP, Ser active site YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 Gene3D G3DSA:2.60.410.10 286 377 1.2E-26 T 12-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 Gene3D G3DSA:3.40.710.10 27 285 4.5E-92 T 12-10-2018 YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 152 165 1.4E-17 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 66 77 1.4E-17 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 125 142 1.4E-17 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 SMART SM00936 286 377 6.2E-31 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 286 377 1.6E-21 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 SUPERFAMILY SSF69189 286 379 2.55E-24 T 12-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 SUPERFAMILY SSF56601 9 286 3.84E-83 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_2740 182eb5e59691c82a51b54380f68f76d9 401 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 34 266 1.2E-97 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 YPK_3175 c183d8e22ff1d9815d0a6f85e69de28a 563 SUPERFAMILY SSF51735 418 547 1.14E-26 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3175 c183d8e22ff1d9815d0a6f85e69de28a 563 Gene3D G3DSA:3.40.50.720 416 552 7.1E-27 T 12-10-2018 YPK_3175 c183d8e22ff1d9815d0a6f85e69de28a 563 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 9.0E-81 T 12-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 YPK_3175 c183d8e22ff1d9815d0a6f85e69de28a 563 Gene3D G3DSA:1.20.1530.20 6 397 3.2E-79 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily YPK_3175 c183d8e22ff1d9815d0a6f85e69de28a 563 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 1.0E-79 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 YPK_3175 c183d8e22ff1d9815d0a6f85e69de28a 563 Pfam PF02254 TrkA-N domain 420 534 6.9E-21 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 Gene3D G3DSA:3.40.50.10260 15 224 2.8E-54 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 234 503 23.404 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 20 219 8.1E-49 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 PIRSF PIRSF017184 15 504 5.9E-142 T 12-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 SUPERFAMILY SSF53613 232 499 1.08E-76 T 12-10-2018 IPR029056 Ribokinase-like YPK_3804 61e713807e3248faa9b5f160d6405d58 504 Pfam PF01256 Carbohydrate kinase 258 495 1.2E-68 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 19 220 21.456 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 232 499 1.2E-81 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 SUPERFAMILY SSF64153 16 256 3.53E-60 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 YPK_3804 61e713807e3248faa9b5f160d6405d58 504 Gene3D G3DSA:3.40.1190.20 226 500 2.1E-87 T 12-10-2018 IPR029056 Ribokinase-like YPK_3804 61e713807e3248faa9b5f160d6405d58 504 Pfam PF03853 YjeF-related protein N-terminus 40 199 6.2E-39 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 SMART SM00319 62 202 0.0076 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 SMART SM00283 293 540 1.2E-88 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 Gene3D G3DSA:1.10.287.950 240 542 1.4E-89 T 12-10-2018 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 Pfam PF02203 Tar ligand binding domain homologue 27 192 1.9E-28 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 468 497 1.2E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 30 55 1.2E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 420 449 1.2E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 314 343 1.2E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 418 1.2E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 Gene3D G3DSA:1.20.120.30 49 214 7.2E-6 T 12-10-2018 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 SMART SM00304 240 292 1.6E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 SUPERFAMILY SSF47170 55 180 4.45E-14 T 12-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 318 340 - T 12-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 Pfam PF00672 HAMP domain 242 287 2.7E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 SUPERFAMILY SSF58104 260 541 4.32E-70 T 12-10-2018 YPK_1742 53244b6d8b36f7e1fb10d67729ff0e0d 579 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 351 508 9.9E-54 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 Pfam PF13237 4Fe-4S dicluster domain 373 427 2.9E-10 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 698 252.596 T 12-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 445 1.6E-179 T 12-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 SUPERFAMILY SSF142019 94 303 5.75E-59 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 Gene3D G3DSA:3.40.50.11540 144 281 1.5E-11 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 3.7E-47 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 4.0E-28 T 12-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 Pfam PF10531 SLBB domain 296 344 8.5E-11 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 377 388 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 SUPERFAMILY SSF46548 336 444 1.01E-21 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_2008 232457a616b6bf1bc619e43f24f9b595 698 Gene3D G3DSA:3.30.70.20 372 446 1.9E-11 T 12-10-2018 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 276 376 8.9E-23 T 12-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 265 284 8.5E-20 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 389 8.5E-20 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 8.5E-20 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 8.5E-20 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 8.5E-20 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 12-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 Gene3D G3DSA:3.20.20.10 33 279 4.4E-141 T 12-10-2018 IPR029066 PLP-binding barrel YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 419 37.798 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 SUPERFAMILY SSF50621 251 419 5.44E-56 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 48 275 6.8E-57 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 2.8E-26 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 386 408 2.8E-26 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 293 311 2.8E-26 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 157 166 2.8E-26 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 11 418 2.0E-126 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 12-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 Gene3D G3DSA:2.40.37.10 22 415 4.4E-141 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YPK_1024 b7daeb5ef3ea660e52570f108cd50200 420 SUPERFAMILY SSF51419 25 277 8.24E-57 T 12-10-2018 IPR029066 PLP-binding barrel YPK_3624 f199d897c15ea5d8395d66d6eb8605a6 239 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 8.8E-126 T 12-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 YPK_3624 f199d897c15ea5d8395d66d6eb8605a6 239 Gene3D G3DSA:3.40.50.1580 1 238 3.4E-77 T 12-10-2018 YPK_3624 f199d897c15ea5d8395d66d6eb8605a6 239 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 12-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3624 f199d897c15ea5d8395d66d6eb8605a6 239 Pfam PF01048 Phosphorylase superfamily 15 219 5.9E-41 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YPK_3624 f199d897c15ea5d8395d66d6eb8605a6 239 SUPERFAMILY SSF53167 3 234 3.27E-94 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YPK_3624 f199d897c15ea5d8395d66d6eb8605a6 239 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 52.567 T 12-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 YPK_3372 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Gene3D G3DSA:3.30.70.1680 1 61 1.3E-31 T 12-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 YPK_3372 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 12-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 YPK_3372 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 59 17.134 T 12-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 YPK_3372 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-20 T 12-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 YPK_3372 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 59 1.3E-31 T 12-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 YPK_3372 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Pfam PF02599 Global regulator protein family 1 52 2.5E-27 T 12-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 SUPERFAMILY SSF48179 204 384 1.26E-46 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 Gene3D G3DSA:1.10.1040.10 207 382 1.6E-70 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 SUPERFAMILY SSF51735 1 203 3.24E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 Gene3D G3DSA:3.40.50.720 1 205 1.8E-81 T 12-10-2018 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 373 6.3E-66 T 12-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 1.3E-16 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 1.3E-16 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 PRINTS PR00084 Mannitol dehydrogenase signature 170 185 1.3E-16 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 1.3E-16 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 2.8E-25 T 12-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 378 40.649 T 12-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_0027 3c1b53b6bd50ca64eb8900ddf082e615 387 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 12-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 151 8.1E-64 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 1.5E-171 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 3.2E-50 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 3.2E-50 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 3.2E-50 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 3.2E-50 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 3.2E-50 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 3.2E-50 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 Gene3D G3DSA:3.90.226.10 4 319 4.6E-123 T 12-10-2018 YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 SUPERFAMILY SSF52096 5 318 4.98E-105 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_1082 fb10a07c09c06985ba1994be1ca44e6a 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 51.026 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_0469 37a7c4ae82595842376d59ffc0d4ec24 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 1.9E-174 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 YPK_0469 37a7c4ae82595842376d59ffc0d4ec24 489 Pfam PF00575 S1 RNA binding domain 38 109 3.2E-6 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_0469 37a7c4ae82595842376d59ffc0d4ec24 489 SMART SM00316 37 122 2.1E-9 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_0469 37a7c4ae82595842376d59ffc0d4ec24 489 Gene3D G3DSA:2.40.50.140 31 127 4.1E-31 T 12-10-2018 YPK_0469 37a7c4ae82595842376d59ffc0d4ec24 489 Gene3D G3DSA:3.40.1260.20 402 488 3.9E-6 T 12-10-2018 YPK_0469 37a7c4ae82595842376d59ffc0d4ec24 489 Pfam PF10150 Ribonuclease E/G family 124 393 4.0E-101 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 YPK_0469 37a7c4ae82595842376d59ffc0d4ec24 489 SUPERFAMILY SSF50249 39 128 6.0E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3150 2878b653f957cd700013190623ede902 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 2.8E-67 T 12-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 SUPERFAMILY SSF51735 123 285 1.39E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3150 2878b653f957cd700013190623ede902 288 SUPERFAMILY SSF53223 3 122 1.15E-39 T 12-10-2018 YPK_3150 2878b653f957cd700013190623ede902 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 12-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.244 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 Gene3D G3DSA:3.40.50.10860 8 276 8.4E-106 T 12-10-2018 YPK_3150 2878b653f957cd700013190623ede902 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 12-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 8.2E-39 T 12-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.3E-87 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.3E-87 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.3E-87 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.3E-87 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.3E-87 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.3E-87 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.3E-87 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 YPK_3150 2878b653f957cd700013190623ede902 288 Gene3D G3DSA:3.40.50.720 6 259 8.4E-106 T 12-10-2018 YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 SUPERFAMILY SSF51395 433 1187 1.05E-252 T 12-10-2018 YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 Gene3D G3DSA:3.60.20.10 12 544 0.0 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 Pfam PF01645 Conserved region in glutamate synthase 792 1155 7.8E-158 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 Gene3D G3DSA:3.20.20.70 482 1168 0.0 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 Pfam PF00310 Glutamine amidotransferases class-II 12 424 3.8E-176 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 SUPERFAMILY SSF69336 1210 1464 1.83E-89 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 Gene3D G3DSA:3.20.20.70 429 791 0.0 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 Pfam PF01493 GXGXG motif 1235 1418 5.8E-76 T 12-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 Gene3D G3DSA:2.160.20.60 1196 1467 5.3E-103 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 SUPERFAMILY SSF56235 12 428 4.63E-150 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_0530 beb46a33ad49e4b19609ac961974815c 1485 Pfam PF04898 Glutamate synthase central domain 456 736 2.0E-104 T 12-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 YPK_3697 50aa5dafa5a25808b9cdba28c639137f 293 Pfam PF06007 Phosphonate metabolism protein PhnJ 7 278 3.1E-146 T 12-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_3697 50aa5dafa5a25808b9cdba28c639137f 293 PIRSF PIRSF011468 1 288 8.4E-165 T 12-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_1443 3cc3a325471581b64e7a44eebc992caf 158 Pfam PF05232 Chlorhexidine efflux transporter 74 136 5.0E-24 T 12-10-2018 IPR007896 Chlorhexidine efflux transporter YPK_1443 3cc3a325471581b64e7a44eebc992caf 158 Pfam PF05232 Chlorhexidine efflux transporter 6 68 5.6E-24 T 12-10-2018 IPR007896 Chlorhexidine efflux transporter YPK_2019 7cbb1657b4f9497d8fc8b8911f0f4e77 221 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YPK_2019 7cbb1657b4f9497d8fc8b8911f0f4e77 221 Gene3D G3DSA:3.20.20.70 1 220 3.5E-77 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2019 7cbb1657b4f9497d8fc8b8911f0f4e77 221 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 214 4.8E-81 T 12-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 YPK_2019 7cbb1657b4f9497d8fc8b8911f0f4e77 221 SUPERFAMILY SSF51569 1 216 4.61E-63 T 12-10-2018 YPK_2019 7cbb1657b4f9497d8fc8b8911f0f4e77 221 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YPK_2019 7cbb1657b4f9497d8fc8b8911f0f4e77 221 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 206 2.3E-43 T 12-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 Gene3D G3DSA:1.10.10.60 7 57 1.0E-20 T 12-10-2018 YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 SUPERFAMILY SSF46689 8 57 6.66E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 75 90 5.2E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 90 106 5.2E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 Pfam PF06445 GyrI-like small molecule binding domain 129 281 3.3E-19 T 12-10-2018 IPR029442 GyrI-like small molecule binding domain YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 Gene3D G3DSA:3.20.80.10 125 290 1.8E-20 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 SUPERFAMILY SSF55136 127 272 3.14E-18 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 Gene3D G3DSA:1.10.10.60 58 122 2.9E-21 T 12-10-2018 YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 SMART SM00342 23 106 1.4E-29 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 SUPERFAMILY SSF46689 61 111 6.72E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2009 278eba049e09b3e8d6a3cee3280aa626 297 Pfam PF12833 Helix-turn-helix domain 30 107 8.1E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0016 8356bac286899a03b6f73390c386238b 687 PIRSF PIRSF036917 1 686 0.0 T 12-10-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 YPK_0016 8356bac286899a03b6f73390c386238b 687 Pfam PF00128 Alpha amylase, catalytic domain 228 606 9.4E-40 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_0016 8356bac286899a03b6f73390c386238b 687 SUPERFAMILY SSF51445 182 653 3.8E-77 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0016 8356bac286899a03b6f73390c386238b 687 Gene3D G3DSA:3.20.20.80 433 654 5.0E-35 T 12-10-2018 YPK_0016 8356bac286899a03b6f73390c386238b 687 SMART SM00642 195 647 2.4E-81 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 YPK_0016 8356bac286899a03b6f73390c386238b 687 Gene3D G3DSA:3.20.20.80 177 417 7.4E-51 T 12-10-2018 YPK_2077 709ea341598949e29df19ae3630def04 448 Gene3D G3DSA:1.20.5.100 205 236 7.7E-19 T 12-10-2018 YPK_2077 709ea341598949e29df19ae3630def04 448 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 322 426 7.9E-32 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YPK_2077 709ea341598949e29df19ae3630def04 448 SMART SM00984 322 426 1.0E-52 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YPK_2077 709ea341598949e29df19ae3630def04 448 Gene3D G3DSA:3.40.50.720 237 447 5.4E-79 T 12-10-2018 YPK_2077 709ea341598949e29df19ae3630def04 448 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 181 1.8E-62 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YPK_2077 709ea341598949e29df19ae3630def04 448 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 298 1.6E-38 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YPK_2077 709ea341598949e29df19ae3630def04 448 Gene3D G3DSA:3.40.50.720 1 204 2.0E-74 T 12-10-2018 YPK_2077 709ea341598949e29df19ae3630def04 448 SUPERFAMILY SSF51735 1 197 5.26E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2077 709ea341598949e29df19ae3630def04 448 SUPERFAMILY SSF48179 205 302 1.43E-32 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_2077 709ea341598949e29df19ae3630def04 448 SUPERFAMILY SSF52413 312 437 3.27E-40 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 YPK_2077 709ea341598949e29df19ae3630def04 448 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 422 1.4E-136 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 YPK_2077 709ea341598949e29df19ae3630def04 448 PIRSF PIRSF500134 1 444 4.2E-187 T 12-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 YPK_2077 709ea341598949e29df19ae3630def04 448 PIRSF PIRSF000124 1 441 3.2E-146 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 YPK_4122 9b6cea722480291da215307327b069d7 475 Pfam PF00939 Sodium:sulfate symporter transmembrane region 3 473 3.2E-144 T 12-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 YPK_4122 9b6cea722480291da215307327b069d7 475 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 23 468 1.4E-131 T 12-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 YPK_4122 9b6cea722480291da215307327b069d7 475 PIRSF PIRSF002457 1 474 3.4E-131 T 12-10-2018 IPR030676 Citrate carrier CitT-related YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 Pfam PF00009 Elongation factor Tu GTP binding domain 56 257 5.5E-44 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 Gene3D G3DSA:2.40.30.10 271 359 1.4E-24 T 12-10-2018 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 58 464 1.3E-202 T 12-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 Gene3D G3DSA:2.40.30.10 362 464 5.7E-28 T 12-10-2018 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 64 244 4.5E-16 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 SUPERFAMILY SSF50447 273 358 1.1E-22 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 SUPERFAMILY SSF50465 365 465 3.55E-28 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 49 505 52.985 T 12-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 59 72 1.1E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 140 150 1.1E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 120 128 1.1E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 156 167 1.1E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 PRINTS PR00315 GTP-binding elongation factor signature 193 202 1.1E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 SUPERFAMILY SSF52540 51 265 3.89E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 Gene3D G3DSA:3.40.50.300 37 270 2.9E-71 T 12-10-2018 YPK_3435 6852c57472e5ea00abd8583fc8b9f5a4 505 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 113 128 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 Pfam PF01479 S4 domain 8 52 7.9E-10 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 Gene3D G3DSA:3.10.290.10 1 62 1.3E-22 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 Gene3D G3DSA:3.30.70.580 70 229 3.0E-57 T 12-10-2018 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 SUPERFAMILY SSF55174 7 62 5.38E-12 T 12-10-2018 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 SMART SM00363 7 63 1.7E-9 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 Pfam PF00849 RNA pseudouridylate synthase 69 195 1.4E-15 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 SUPERFAMILY SSF55120 69 229 2.4E-38 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 Gene3D G3DSA:3.30.70.1560 134 207 3.0E-57 T 12-10-2018 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 226 1.4E-51 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 YPK_3069 172490250f4a4a090ebbdde3f64dfee9 290 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 YPK_1327 39364e9324ee858f2e14c4f1e40c8b29 239 Gene3D G3DSA:1.10.10.10 141 238 2.2E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1327 39364e9324ee858f2e14c4f1e40c8b29 239 Gene3D G3DSA:3.40.50.2300 3 139 2.0E-36 T 12-10-2018 YPK_1327 39364e9324ee858f2e14c4f1e40c8b29 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 230 6.8E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1327 39364e9324ee858f2e14c4f1e40c8b29 239 Pfam PF00072 Response regulator receiver domain 14 122 7.0E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1327 39364e9324ee858f2e14c4f1e40c8b29 239 SMART SM00448 12 122 3.7E-40 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1327 39364e9324ee858f2e14c4f1e40c8b29 239 SUPERFAMILY SSF52172 12 189 3.84E-40 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1327 39364e9324ee858f2e14c4f1e40c8b29 239 SMART SM00862 155 231 6.9E-26 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 Gene3D G3DSA:3.50.50.60 11 367 6.3E-80 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 15 32 - T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 SUPERFAMILY SSF51905 10 323 6.12E-45 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 Pfam PF04324 BFD-like [2Fe-2S] binding domain 433 484 1.7E-9 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 353 363 - T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 Pfam PF01266 FAD dependent oxidoreductase 11 360 6.1E-55 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 Gene3D G3DSA:1.10.10.1100 423 493 3.7E-17 T 12-10-2018 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 11 540 4.6E-268 T 12-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 Gene3D G3DSA:3.30.9.10 87 319 6.3E-80 T 12-10-2018 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 23 33 7.3E-22 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 348 360 7.3E-22 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 10 22 7.3E-22 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 312 318 7.3E-22 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_3991 8fe06e2e7d7fdb25e62a22bd8237154c 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 39 51 7.3E-22 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 YPK_1123 aebc2c067d0ea0d3e7e16284660eed32 112 Pfam PF04899 MbeD/MobD like 3 61 1.3E-7 T 12-10-2018 IPR006983 MbeD/MobD-like YPK_2185 6ea173bd679e4c8409a08dfc97cd0ebe 90 Pfam PF10762 Protein of unknown function (DUF2583) 1 87 2.1E-45 T 12-10-2018 IPR019698 Protein of unknown function DUF2583 YPK_0121 6782cefae553d7a763269f61ac7cc2cd 111 Pfam PF10625 Universal stress protein B (UspB) 1 106 1.8E-54 T 12-10-2018 IPR019598 Universal stress protein B YPK_0121 6782cefae553d7a763269f61ac7cc2cd 111 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 37.029 T 12-10-2018 IPR019598 Universal stress protein B YPK_4238 77ef118fbdcdfa8002e7697274ed57ba 245 Gene3D G3DSA:1.10.3720.10 7 241 7.2E-46 T 12-10-2018 IPR035906 MetI-like superfamily YPK_4238 77ef118fbdcdfa8002e7697274ed57ba 245 SUPERFAMILY SSF161098 17 226 1.96E-38 T 12-10-2018 IPR035906 MetI-like superfamily YPK_4238 77ef118fbdcdfa8002e7697274ed57ba 245 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 229 9.1E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_4238 77ef118fbdcdfa8002e7697274ed57ba 245 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 17 85 2.6E-16 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 Gene3D G3DSA:2.160.10.10 228 456 2.6E-72 T 12-10-2018 YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 Pfam PF12804 MobA-like NTP transferase domain 8 122 1.2E-22 T 12-10-2018 IPR025877 MobA-like NTP transferase YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 455 8.4E-205 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 SUPERFAMILY SSF51161 255 438 1.66E-51 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 299 2.4E-4 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 322 352 3.1E-4 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 429 6.3E-7 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 452 43.326 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 Gene3D G3DSA:3.90.550.10 1 227 9.9E-75 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4228 12b5d1f50f6d2f5cf1d0e8666014b627 456 SUPERFAMILY SSF53448 5 252 5.42E-68 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3975 aaff589c244b2a12c4a63fb6a5a9d0f8 130 Pfam PF12568 Acetyltransferase (GNAT) domain 2 129 2.4E-55 T 12-10-2018 IPR000182 GNAT domain YPK_3975 aaff589c244b2a12c4a63fb6a5a9d0f8 130 SUPERFAMILY SSF55729 11 123 3.21E-11 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_3975 aaff589c244b2a12c4a63fb6a5a9d0f8 130 Gene3D G3DSA:3.40.630.30 1 130 5.8E-38 T 12-10-2018 YPK_3975 aaff589c244b2a12c4a63fb6a5a9d0f8 130 Hamap MF_02018 PanD regulatory factor [panZ]. 1 130 34.69 T 12-10-2018 IPR032900 PanD regulatory factor PanZ GO:0015940|GO:0031638 YPK_3533 95d7baf767990c8182d47b009afbfcec 318 SUPERFAMILY SSF46785 22 101 7.0E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3533 95d7baf767990c8182d47b009afbfcec 318 Gene3D G3DSA:3.40.190.10 108 310 2.6E-39 T 12-10-2018 YPK_3533 95d7baf767990c8182d47b009afbfcec 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 27 86 2.0E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3533 95d7baf767990c8182d47b009afbfcec 318 Gene3D G3DSA:1.10.10.10 17 105 1.1E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3533 95d7baf767990c8182d47b009afbfcec 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 63 74 4.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3533 95d7baf767990c8182d47b009afbfcec 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3533 95d7baf767990c8182d47b009afbfcec 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 63 4.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3533 95d7baf767990c8182d47b009afbfcec 318 Pfam PF03466 LysR substrate binding domain 119 311 1.5E-19 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_3533 95d7baf767990c8182d47b009afbfcec 318 Gene3D G3DSA:3.40.190.10 189 286 2.6E-39 T 12-10-2018 YPK_3533 95d7baf767990c8182d47b009afbfcec 318 SUPERFAMILY SSF53850 108 312 1.71E-42 T 12-10-2018 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 529 652 3.1E-46 T 12-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 SUPERFAMILY SSF51261 522 672 1.53E-50 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 Pfam PF00367 phosphotransferase system, EIIB 425 457 4.9E-12 T 12-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 SUPERFAMILY SSF55604 422 495 1.7E-17 T 12-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 Gene3D G3DSA:2.70.70.10 517 676 4.3E-53 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 435 452 - T 12-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 Pfam PF02378 Phosphotransferase system, EIIC 12 324 3.4E-75 T 12-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 591 603 - T 12-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 384 482 4.0E-20 T 12-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 Gene3D G3DSA:3.30.1360.60 418 498 8.2E-23 T 12-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 493 2.5E-202 T 12-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 YPK_2996 3747c73a793e2288c2a32f24c02dd23d 677 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 529 649 3.8E-46 T 12-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 4 437 1.4E-215 T 12-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 180 201 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 156 175 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 207 226 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 333 344 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 271 298 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 92 114 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 133 153 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 300 311 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 PRINTS PR00688 Xylose isomerase signature 229 253 9.2E-85 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 Hamap MF_00455 Xylose isomerase [xylA]. 11 437 52.638 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 Gene3D G3DSA:3.20.20.150 2 439 1.9E-182 T 12-10-2018 YPK_0056 583b3c09d4cc9dbedf610ff3cf10e464 439 SUPERFAMILY SSF51658 4 438 1.6E-173 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 Pfam PF00288 GHMP kinases N terminal domain 115 181 1.8E-14 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 12-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 Pfam PF10509 Galactokinase galactose-binding signature 11 57 6.5E-22 T 12-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 SUPERFAMILY SSF54211 3 203 4.63E-64 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 SUPERFAMILY SSF55060 205 381 1.15E-52 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 Hamap MF_00246 Galactokinase [galK]. 25 382 42.547 T 12-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 Pfam PF08544 GHMP kinases C terminal 279 361 5.8E-10 T 12-10-2018 IPR013750 GHMP kinase, C-terminal domain YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 Gene3D G3DSA:3.30.230.10 23 201 1.2E-127 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 TIGRFAM TIGR00131 gal_kin: galactokinase 5 383 2.6E-152 T 12-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00959 Mevalonate kinase family signature 119 141 3.8E-46 T 12-10-2018 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00959 Mevalonate kinase family signature 162 181 3.8E-46 T 12-10-2018 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00959 Mevalonate kinase family signature 25 49 3.8E-46 T 12-10-2018 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00959 Mevalonate kinase family signature 328 345 3.8E-46 T 12-10-2018 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 Gene3D G3DSA:3.30.70.890 202 357 1.2E-127 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 12-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00473 Galactokinase signature 92 103 3.1E-29 T 12-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00473 Galactokinase signature 112 130 3.1E-29 T 12-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00473 Galactokinase signature 263 277 3.1E-29 T 12-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PRINTS PR00473 Galactokinase signature 27 45 3.1E-29 T 12-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_2945 39bcf1e108cf7cb32785f3d2f4eb1125 383 PIRSF PIRSF000530 1 383 4.4E-118 T 12-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 Gene3D G3DSA:3.30.450.20 16 148 3.1E-26 T 12-10-2018 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 Gene3D G3DSA:1.10.287.950 244 432 8.2E-38 T 12-10-2018 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 Pfam PF08448 PAS fold 145 248 1.5E-12 T 12-10-2018 IPR013656 PAS fold-4 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 132 6.6E-18 T 12-10-2018 IPR000014 PAS domain YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 254 6.5E-15 T 12-10-2018 IPR000014 PAS domain YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 SUPERFAMILY SSF55785 144 247 3.32E-22 T 12-10-2018 IPR035965 PAS domain superfamily YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 SMART SM00086 207 249 5.5E-4 T 12-10-2018 IPR001610 PAC motif YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 SMART SM00086 85 127 1.3E-7 T 12-10-2018 IPR001610 PAC motif YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 347 376 1.3E-15 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 318 345 1.3E-15 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 SMART SM00091 11 79 1.9 T 12-10-2018 IPR000014 PAS domain YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 SMART SM00091 132 199 0.0059 T 12-10-2018 IPR000014 PAS domain YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 SUPERFAMILY SSF55785 23 124 2.62E-24 T 12-10-2018 IPR035965 PAS domain superfamily YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 SMART SM00283 238 428 4.9E-10 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 267 430 1.8E-32 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 Pfam PF13426 PAS domain 24 126 5.7E-15 T 12-10-2018 IPR000014 PAS domain YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 Gene3D G3DSA:3.30.450.20 149 243 2.8E-17 T 12-10-2018 YPK_1597 e0045ea0065f12b6d465ea1709b58f1d 434 SUPERFAMILY SSF58104 215 429 7.06E-47 T 12-10-2018 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 Pfam PF01479 S4 domain 359 400 2.5E-5 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 SUPERFAMILY SSF52374 4 328 7.42E-109 T 12-10-2018 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 423 46.08 T 12-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 SUPERFAMILY SSF55174 327 423 1.1E-20 T 12-10-2018 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 423 3.5E-144 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 Gene3D G3DSA:1.10.240.10 228 329 6.4E-36 T 12-10-2018 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 188 210 3.2E-32 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 221 233 3.2E-32 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 3.2E-32 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 167 182 3.2E-32 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 Pfam PF00579 tRNA synthetases class I (W and Y) 31 328 1.1E-91 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 Gene3D G3DSA:3.10.290.10 330 424 1.3E-28 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 SMART SM00363 357 419 0.0049 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_1881 3bdc7ed401d50f3c043d44b9625a3564 424 Gene3D G3DSA:3.40.50.620 1 227 8.8E-95 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1031 c1d1882fe799214596cdfb72a59c4e5e 346 Gene3D G3DSA:3.20.20.100 1 346 1.8E-139 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_1031 c1d1882fe799214596cdfb72a59c4e5e 346 SUPERFAMILY SSF51430 1 344 6.29E-108 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_1031 c1d1882fe799214596cdfb72a59c4e5e 346 Pfam PF00248 Aldo/keto reductase family 16 337 2.3E-74 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain YPK_2131 5d82b7e2b9a00037ed0d97705467957a 147 Gene3D G3DSA:1.10.3730.20 2 109 1.1E-28 T 12-10-2018 YPK_2131 5d82b7e2b9a00037ed0d97705467957a 147 Hamap MF_01598 Spermidine export protein MdtJ [mdtJ]. 1 147 32.438 T 12-10-2018 IPR023740 Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848 YPK_2131 5d82b7e2b9a00037ed0d97705467957a 147 Pfam PF00893 Small Multidrug Resistance protein 3 93 1.3E-22 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 YPK_2131 5d82b7e2b9a00037ed0d97705467957a 147 SUPERFAMILY SSF103481 6 107 1.27E-16 T 12-10-2018 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 Gene3D G3DSA:1.20.990.10 281 385 2.5E-74 T 12-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 Pfam PF00258 Flavodoxin 67 195 7.0E-31 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 Pfam PF00175 Oxidoreductase NAD-binding domain 458 564 6.6E-20 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 482 491 3.4E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 549 557 3.4E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 271 281 3.4E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 387 394 3.4E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 420 429 3.4E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 495 506 3.4E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 526 542 3.4E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 457 476 3.4E-29 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 SUPERFAMILY SSF63380 228 447 2.27E-63 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 Gene3D G3DSA:2.40.30.10 233 440 2.5E-74 T 12-10-2018 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 600 5.1E-271 T 12-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00369 Flavodoxin signature 113 124 3.8E-14 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00369 Flavodoxin signature 145 155 3.8E-14 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00369 Flavodoxin signature 65 78 3.8E-14 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PRINTS PR00369 Flavodoxin signature 169 188 3.8E-14 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 Gene3D G3DSA:3.40.50.80 446 600 2.7E-58 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 PIRSF PIRSF000207 1 600 4.7E-274 T 12-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 Gene3D G3DSA:3.40.50.360 59 219 1.5E-45 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 2 600 51.693 T 12-10-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 SUPERFAMILY SSF52343 445 600 1.57E-51 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 Pfam PF00667 FAD binding domain 231 425 1.9E-26 T 12-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 YPK_3442 b8022925ec4b92b989a8b3e9d901caab 600 SUPERFAMILY SSF52218 63 209 2.99E-42 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_3094 62747adac746d6df9627542cd445a789 348 Gene3D G3DSA:2.60.40.10 6 88 7.9E-6 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3094 62747adac746d6df9627542cd445a789 348 Pfam PF09327 Domain of unknown function (DUF1983) 184 263 1.3E-24 T 12-10-2018 IPR015406 Domain of unknown function DUF1983 YPK_3094 62747adac746d6df9627542cd445a789 348 SUPERFAMILY SSF49265 14 87 5.21E-6 T 12-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 YPK_3639 a3a59a445bc3fbbb92946c2685fc1ccf 361 Gene3D G3DSA:2.160.20.10 41 361 1.3E-132 T 12-10-2018 IPR012334 Pectin lyase fold YPK_3639 a3a59a445bc3fbbb92946c2685fc1ccf 361 Pfam PF01095 Pectinesterase 31 335 3.2E-38 T 12-10-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 YPK_3639 a3a59a445bc3fbbb92946c2685fc1ccf 361 SUPERFAMILY SSF51126 28 357 3.14E-60 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 SMART SM00760 358 427 6.1E-45 T 12-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 Pfam PF11638 DnaA N-terminal domain 1 52 4.9E-15 T 12-10-2018 IPR024633 DnaA N-terminal domain YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 SMART SM00382 147 349 6.3E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 ProSitePatterns PS01008 DnaA protein signature. 408 427 - T 12-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 Gene3D G3DSA:3.40.50.300 101 279 1.6E-51 T 12-10-2018 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 Gene3D G3DSA:3.30.300.180 1 96 3.2E-34 T 12-10-2018 IPR038454 DnaA, N-terminal domain superfamily YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 SUPERFAMILY SSF48295 346 449 3.4E-38 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 1 448 2.5E-183 T 12-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 Gene3D G3DSA:1.10.8.60 281 351 1.1E-23 T 12-10-2018 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 SUPERFAMILY SSF52540 115 326 7.16E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 449 32.697 T 12-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 Gene3D G3DSA:1.10.1750.10 357 450 6.9E-40 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 Pfam PF00308 Bacterial dnaA protein 116 332 5.4E-99 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 359 427 9.7E-33 T 12-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 148 168 1.1E-54 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 408 427 1.1E-54 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 180 194 1.1E-54 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 212 226 1.1E-54 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_0001 cdd87050de8841ec0b4a243340b2387a 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 246 273 1.1E-54 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_0005 5f7b0bfabccf595676e7e0f4255b59df 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 12-10-2018 YPK_0005 5f7b0bfabccf595676e7e0f4255b59df 269 Gene3D G3DSA:3.40.50.1000 5 265 2.1E-95 T 12-10-2018 IPR023214 HAD superfamily YPK_0005 5f7b0bfabccf595676e7e0f4255b59df 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 237 2.4E-28 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 YPK_0005 5f7b0bfabccf595676e7e0f4255b59df 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 264 2.1E-69 T 12-10-2018 YPK_0005 5f7b0bfabccf595676e7e0f4255b59df 269 SUPERFAMILY SSF56784 1 268 4.34E-78 T 12-10-2018 IPR036412 HAD-like superfamily YPK_0005 5f7b0bfabccf595676e7e0f4255b59df 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 264 4.6E-68 T 12-10-2018 IPR000150 Cof family GO:0016787 YPK_0005 5f7b0bfabccf595676e7e0f4255b59df 269 Gene3D G3DSA:3.30.1240.10 87 193 2.1E-95 T 12-10-2018 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 Gene3D G3DSA:1.20.1250.20 254 453 3.6E-12 T 12-10-2018 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 Hamap MF_01577 Putative multidrug resistance protein MdtD [mdtD]. 1 465 42.468 T 12-10-2018 IPR023721 Multidrug resistance protein MdtD, putative YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 199 217 2.0E-8 T 12-10-2018 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 2.0E-8 T 12-10-2018 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 2.0E-8 T 12-10-2018 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 2.0E-8 T 12-10-2018 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 2.0E-8 T 12-10-2018 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 SUPERFAMILY SSF103473 9 451 9.29E-58 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 Pfam PF07690 Major Facilitator Superfamily 15 405 1.1E-43 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 433 7.0E-69 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 YPK_1329 341f5371cfef77164dbcd102f0dd5fd3 465 Gene3D G3DSA:1.20.1720.10 12 253 1.0E-44 T 12-10-2018 YPK_3646 d35e0b9c79b5df55e9d275d216e27c5d 410 Pfam PF04932 O-Antigen ligase 194 338 2.7E-16 T 12-10-2018 IPR007016 O-antigen ligase-related YPK_2997 5c264bfb27eb80a465d0d6df5313be8e 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 230 7.8E-21 T 12-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 YPK_2997 5c264bfb27eb80a465d0d6df5313be8e 266 Gene3D G3DSA:3.40.50.1360 1 266 1.3E-115 T 12-10-2018 YPK_2997 5c264bfb27eb80a465d0d6df5313be8e 266 SUPERFAMILY SSF100950 1 263 1.34E-103 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_2997 5c264bfb27eb80a465d0d6df5313be8e 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 2.7E-138 T 12-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 YPK_2997 5c264bfb27eb80a465d0d6df5313be8e 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 12-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 YPK_2997 5c264bfb27eb80a465d0d6df5313be8e 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.253 T 12-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 124 2.7E-23 T 12-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 611 4.2E-231 T 12-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 Pfam PF00361 Proton-conducting membrane transporter 136 428 1.0E-94 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 181 3.1E-55 T 12-10-2018 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 250 276 3.1E-55 T 12-10-2018 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 318 330 3.1E-55 T 12-10-2018 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 421 440 3.1E-55 T 12-10-2018 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 3.1E-55 T 12-10-2018 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 228 249 3.1E-55 T 12-10-2018 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 113 133 3.1E-55 T 12-10-2018 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 87 107 4.7E-10 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 420 442 4.7E-10 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 61 85 4.7E-10 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 YPK_1570 43af4633f6013a2ddc338ece266d26ab 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 268 290 4.7E-10 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 PIRSF PIRSF002560 1 157 2.7E-70 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 Gene3D G3DSA:1.20.1260.10 1 157 1.7E-70 T 12-10-2018 IPR012347 Ferritin-like YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 4.3E-80 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 3 22 3.3E-75 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 44 64 3.3E-75 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 128 149 3.3E-75 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 65 85 3.3E-75 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 23 43 3.3E-75 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 107 127 3.3E-75 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 PRINTS PR00601 Bacterioferritin signature 86 106 3.3E-75 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 Pfam PF00210 Ferritin-like domain 8 143 1.1E-38 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 SUPERFAMILY SSF47240 1 153 2.24E-52 T 12-10-2018 IPR009078 Ferritin-like superfamily YPK_0281 5c78bb18213f020c0e750cd3c31543fa 157 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 25 2.6E-4 T 12-10-2018 IPR024973 ESPR domain YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 557 591 3500.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1326 1370 10000.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 775 807 3000.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1671 1695 160.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 623 644 990.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1157 1178 3300.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 210 232 9100.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1863 1887 4900.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1393 1417 6300.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1531 1552 4300.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 997 1038 690.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 814 838 6100.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1817 1841 93.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1716 1740 2500.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00710 1566 1587 4600.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SMART SM00912 70 182 7.1E-37 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 104 176 3.3E-25 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 SUPERFAMILY SSF51126 64 363 6.28E-48 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 Gene3D G3DSA:2.160.20.10 74 453 2.5E-91 T 12-10-2018 IPR012334 Pectin lyase fold YPK_3312 f8408c1220c04fa6287d9d2f99037d54 2054 Pfam PF05860 haemagglutination activity domain 90 178 1.6E-22 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_3791 649f3d373f1715be0e78e8b04c568889 844 SUPERFAMILY SSF50249 222 642 4.63E-141 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3791 649f3d373f1715be0e78e8b04c568889 844 Pfam PF00773 RNB domain 260 587 5.2E-106 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 SUPERFAMILY SSF50249 645 725 8.01E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3791 649f3d373f1715be0e78e8b04c568889 844 SMART SM00955 260 588 8.3E-183 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 SMART SM00357 86 145 2.7E-16 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 Pfam PF00575 S1 RNA binding domain 642 724 1.2E-16 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 Gene3D G3DSA:2.40.50.140 73 148 1.4E-16 T 12-10-2018 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 726 3.5E-270 T 12-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 SMART SM00316 643 726 3.4E-12 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 SMART SM00316 80 142 12.0 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 Hamap MF_01895 Ribonuclease R [rnr]. 38 726 57.155 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 SUPERFAMILY SSF50249 67 145 3.82E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3791 649f3d373f1715be0e78e8b04c568889 844 Pfam PF08461 Ribonuclease R winged-helix domain 23 85 1.2E-16 T 12-10-2018 IPR013668 Ribonuclease R winged-helix domain YPK_3791 649f3d373f1715be0e78e8b04c568889 844 Pfam PF08206 Ribonuclease B OB domain 87 144 3.8E-22 T 12-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain YPK_3791 649f3d373f1715be0e78e8b04c568889 844 Gene3D G3DSA:2.40.50.140 646 752 8.0E-23 T 12-10-2018 YPK_3791 649f3d373f1715be0e78e8b04c568889 844 SUPERFAMILY SSF50249 138 236 3.62E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3791 649f3d373f1715be0e78e8b04c568889 844 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 726 4.7E-276 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 YPK_2711 ca1104f7499df044cb9471035057c6ab 243 SUPERFAMILY SSF53850 1 242 4.93E-73 T 12-10-2018 YPK_2711 ca1104f7499df044cb9471035057c6ab 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 5 241 1.6E-90 T 12-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 YPK_2711 ca1104f7499df044cb9471035057c6ab 243 SMART SM00079 22 243 9.2E-5 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 YPK_2711 ca1104f7499df044cb9471035057c6ab 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site YPK_2711 ca1104f7499df044cb9471035057c6ab 243 Gene3D G3DSA:3.40.190.10 108 201 1.0E-83 T 12-10-2018 YPK_2711 ca1104f7499df044cb9471035057c6ab 243 SMART SM00062 22 241 7.8E-87 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_2711 ca1104f7499df044cb9471035057c6ab 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 1.2E-70 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_2711 ca1104f7499df044cb9471035057c6ab 243 Gene3D G3DSA:3.40.190.10 26 240 1.0E-83 T 12-10-2018 YPK_3638 a5ee76b05ab009c97fc8cdd546aae6fd 378 SMART SM00267 197 367 1.6E-50 T 12-10-2018 IPR000160 GGDEF domain YPK_3638 a5ee76b05ab009c97fc8cdd546aae6fd 378 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 207 367 5.8E-44 T 12-10-2018 IPR000160 GGDEF domain YPK_3638 a5ee76b05ab009c97fc8cdd546aae6fd 378 Gene3D G3DSA:3.30.70.270 194 369 5.4E-50 T 12-10-2018 YPK_3638 a5ee76b05ab009c97fc8cdd546aae6fd 378 Pfam PF00990 Diguanylate cyclase, GGDEF domain 209 363 1.8E-45 T 12-10-2018 IPR000160 GGDEF domain YPK_3638 a5ee76b05ab009c97fc8cdd546aae6fd 378 SUPERFAMILY SSF55073 213 368 8.63E-43 T 12-10-2018 IPR029787 Nucleotide cyclase YPK_3561 538e2fc00aba262a496f42881b7f5fdc 614 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 6 609 1.9E-109 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_3561 538e2fc00aba262a496f42881b7f5fdc 614 Pfam PF05947 Type VI secretion system, TssF 8 610 2.2E-137 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_3561 538e2fc00aba262a496f42881b7f5fdc 614 PIRSF PIRSF028304 2 614 1.3E-179 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_4187 14f51367caea4db5569375798f835c92 196 Pfam PF13419 Haloacid dehalogenase-like hydrolase 60 184 2.8E-9 T 12-10-2018 YPK_4187 14f51367caea4db5569375798f835c92 196 Gene3D G3DSA:3.40.50.1000 4 182 1.1E-62 T 12-10-2018 IPR023214 HAD superfamily YPK_4187 14f51367caea4db5569375798f835c92 196 SUPERFAMILY SSF56784 3 188 1.06E-41 T 12-10-2018 IPR036412 HAD-like superfamily YPK_4187 14f51367caea4db5569375798f835c92 196 Gene3D G3DSA:1.10.150.240 16 81 1.1E-62 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPK_4187 14f51367caea4db5569375798f835c92 196 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 63 184 4.0E-17 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3793 02a345d6601b0936c5115f56af628db9 432 SMART SM00788 4 425 8.2E-298 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YPK_3793 02a345d6601b0936c5115f56af628db9 432 Gene3D G3DSA:1.10.300.10 102 201 2.5E-106 T 12-10-2018 YPK_3793 02a345d6601b0936c5115f56af628db9 432 SUPERFAMILY SSF52540 3 431 3.72E-178 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3793 02a345d6601b0936c5115f56af628db9 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 12-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YPK_3793 02a345d6601b0936c5115f56af628db9 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 430 1.6E-202 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YPK_3793 02a345d6601b0936c5115f56af628db9 432 Gene3D G3DSA:3.90.170.10 267 432 1.1E-71 T 12-10-2018 YPK_3793 02a345d6601b0936c5115f56af628db9 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 6.0E-179 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YPK_3793 02a345d6601b0936c5115f56af628db9 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 12-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YPK_3793 02a345d6601b0936c5115f56af628db9 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 217.906 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 YPK_3793 02a345d6601b0936c5115f56af628db9 432 Gene3D G3DSA:3.40.440.10 6 255 2.5E-106 T 12-10-2018 YPK_3039 f502a891696354d10a3d191ab0ede689 271 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 264 2.8E-96 T 12-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 YPK_3039 f502a891696354d10a3d191ab0ede689 271 PIRSF PIRSF036628 1 269 2.7E-112 T 12-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 YPK_3039 f502a891696354d10a3d191ab0ede689 271 Gene3D G3DSA:2.60.120.10 15 123 6.3E-35 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_3039 f502a891696354d10a3d191ab0ede689 271 SUPERFAMILY SSF51182 4 253 1.29E-71 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_3039 f502a891696354d10a3d191ab0ede689 271 Pfam PF04962 KduI/IolB family 7 264 2.0E-109 T 12-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 YPK_3039 f502a891696354d10a3d191ab0ede689 271 Gene3D G3DSA:2.60.120.10 124 270 2.5E-58 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1577 a39100feefefd92307ce18683da23788 427 Pfam PF02638 Glycosyl hydrolase-like 10 43 377 1.3E-101 T 12-10-2018 IPR003790 Glycosyl hydrolase-like 10 YPK_1577 a39100feefefd92307ce18683da23788 427 SUPERFAMILY SSF51445 70 364 6.38E-32 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_1577 a39100feefefd92307ce18683da23788 427 Gene3D G3DSA:3.20.20.70 125 349 1.8E-10 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 4.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 4.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 4.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 Gene3D G3DSA:1.10.287.130 176 292 2.3E-29 T 12-10-2018 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 445 6.5E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 SUPERFAMILY SSF47384 212 291 2.16E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 SUPERFAMILY SSF55874 281 446 1.96E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 SUPERFAMILY SSF158472 173 225 5.23E-8 T 12-10-2018 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 Pfam PF00512 His Kinase A (phospho-acceptor) domain 229 290 8.6E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 SMART SM00388 228 291 7.6E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 SMART SM00387 338 448 7.5E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 SMART SM00304 172 227 3.7E-12 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 Gene3D G3DSA:3.30.565.10 296 448 6.1E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1425 c1e25c64a0339ae487ad5de3fa19fc09 449 Pfam PF00672 HAMP domain 173 224 3.6E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 SUPERFAMILY SSF55781 438 588 1.44E-6 T 12-10-2018 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 SMART SM00471 604 914 1.3E-4 T 12-10-2018 IPR003607 HD/PDEase domain YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 SUPERFAMILY SSF109604 600 682 2.8E-8 T 12-10-2018 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 SUPERFAMILY SSF109604 834 938 1.19E-6 T 12-10-2018 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 Gene3D G3DSA:1.20.1480.50 334 423 2.7E-8 T 12-10-2018 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 Pfam PF13487 HD domain 831 896 1.3E-20 T 12-10-2018 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 Gene3D G3DSA:1.10.3210.10 822 952 5.0E-24 T 12-10-2018 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 Gene3D G3DSA:1.10.3210.10 588 757 2.6E-19 T 12-10-2018 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 Gene3D G3DSA:3.30.450.20 174 229 9.9E-11 T 12-10-2018 YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 Gene3D G3DSA:3.30.450.40 424 587 7.1E-7 T 12-10-2018 IPR029016 GAF-like domain superfamily YPK_2386 003ad78cb36bb37e2bb103823937bc75 984 Gene3D G3DSA:3.30.450.20 230 275 9.9E-11 T 12-10-2018 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 96 420 6.0E-135 T 12-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 SMART SM00387 313 425 1.2E-36 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3275 f388dbb3e6c9301178070814584cdc40 438 Gene3D G3DSA:3.30.565.10 277 425 2.2E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3275 f388dbb3e6c9301178070814584cdc40 438 SUPERFAMILY SSF47384 190 268 4.51E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 Gene3D G3DSA:1.10.287.130 200 269 3.7E-23 T 12-10-2018 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 SUPERFAMILY SSF55785 87 195 1.03E-12 T 12-10-2018 IPR035965 PAS domain superfamily YPK_3275 f388dbb3e6c9301178070814584cdc40 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 423 4.9E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3275 f388dbb3e6c9301178070814584cdc40 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 2.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 2.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 2.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 Gene3D G3DSA:3.30.450.20 86 199 4.0E-9 T 12-10-2018 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 1.8E-28 T 12-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 98 211 7.4E-9 T 12-10-2018 IPR000014 PAS domain YPK_3275 f388dbb3e6c9301178070814584cdc40 438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 268 1.9E-18 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 Pfam PF00989 PAS fold 99 193 3.9E-9 T 12-10-2018 IPR013767 PAS fold GO:0006355 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 SMART SM00388 203 269 3.0E-22 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_3275 f388dbb3e6c9301178070814584cdc40 438 SUPERFAMILY SSF55874 259 423 6.02E-42 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3275 f388dbb3e6c9301178070814584cdc40 438 SMART SM00091 98 165 1.5E-7 T 12-10-2018 IPR000014 PAS domain YPK_3229 3858cc7dd0b67d9d873b14fa5166279a 148 Gene3D G3DSA:1.10.150.280 73 146 5.6E-20 T 12-10-2018 YPK_3229 3858cc7dd0b67d9d873b14fa5166279a 148 Pfam PF12836 Helix-hairpin-helix motif 83 146 1.2E-21 T 12-10-2018 YPK_3229 3858cc7dd0b67d9d873b14fa5166279a 148 SUPERFAMILY SSF47781 72 146 7.23E-24 T 12-10-2018 IPR010994 RuvA domain 2-like YPK_3229 3858cc7dd0b67d9d873b14fa5166279a 148 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 80 146 4.5E-24 T 12-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain YPK_0088 e076d1b72ef9031601a32234600dd6b5 535 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 79 101 - T 12-10-2018 IPR023765 Solute-binding protein family 5, conserved site YPK_0088 e076d1b72ef9031601a32234600dd6b5 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 2.6E-106 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_0088 e076d1b72ef9031601a32234600dd6b5 535 Gene3D G3DSA:3.40.190.10 211 525 2.0E-196 T 12-10-2018 YPK_0088 e076d1b72ef9031601a32234600dd6b5 535 Gene3D G3DSA:3.90.76.10 42 210 2.0E-196 T 12-10-2018 YPK_0088 e076d1b72ef9031601a32234600dd6b5 535 Gene3D G3DSA:3.10.105.10 292 510 2.0E-196 T 12-10-2018 YPK_0088 e076d1b72ef9031601a32234600dd6b5 535 SUPERFAMILY SSF53850 29 534 6.52E-161 T 12-10-2018 YPK_0088 e076d1b72ef9031601a32234600dd6b5 535 PIRSF PIRSF002741 23 535 2.1E-118 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YPK_3026 33d8dcceafc61b475403b71496a16e72 233 Pfam PF03099 Biotin/lipoate A/B protein ligase family 66 163 2.4E-6 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 YPK_3026 33d8dcceafc61b475403b71496a16e72 233 SUPERFAMILY SSF55681 6 209 4.89E-70 T 12-10-2018 YPK_3026 33d8dcceafc61b475403b71496a16e72 233 Gene3D G3DSA:3.30.930.10 4 208 2.5E-62 T 12-10-2018 YPK_3026 33d8dcceafc61b475403b71496a16e72 233 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 75 90 - T 12-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 YPK_3026 33d8dcceafc61b475403b71496a16e72 233 Hamap MF_00013 Octanoyltransferase [lipB]. 9 210 37.162 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YPK_3026 33d8dcceafc61b475403b71496a16e72 233 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 34 207 2.7E-73 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YPK_3026 33d8dcceafc61b475403b71496a16e72 233 PIRSF PIRSF016262 5 217 1.5E-59 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YPK_3026 33d8dcceafc61b475403b71496a16e72 233 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 79 132 5.0E-25 T 12-10-2018 YPK_3358 e682c36e033d0b7238ea76bff9ce134b 238 SUPERFAMILY SSF52172 1 124 9.82E-33 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3358 e682c36e033d0b7238ea76bff9ce134b 238 SMART SM00448 2 112 1.8E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3358 e682c36e033d0b7238ea76bff9ce134b 238 Pfam PF00072 Response regulator receiver domain 4 112 7.0E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3358 e682c36e033d0b7238ea76bff9ce134b 238 SMART SM00850 142 236 4.1E-23 T 12-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 YPK_3358 e682c36e033d0b7238ea76bff9ce134b 238 Gene3D G3DSA:3.40.50.2300 1 127 1.5E-31 T 12-10-2018 YPK_3358 e682c36e033d0b7238ea76bff9ce134b 238 Pfam PF04397 LytTr DNA-binding domain 143 235 1.3E-24 T 12-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 YPK_3358 e682c36e033d0b7238ea76bff9ce134b 238 Gene3D G3DSA:2.40.50.1020 133 237 7.7E-12 T 12-10-2018 YPK_4147 b97ddfc2376116b3f54ed4ceee071fb2 354 SUPERFAMILY SSF53756 1 345 9.94E-101 T 12-10-2018 YPK_4147 b97ddfc2376116b3f54ed4ceee071fb2 354 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 341 2.8E-162 T 12-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 YPK_4147 b97ddfc2376116b3f54ed4ceee071fb2 354 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 324 6.5E-81 T 12-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 YPK_4147 b97ddfc2376116b3f54ed4ceee071fb2 354 Gene3D G3DSA:3.40.50.2000 1 151 1.2E-59 T 12-10-2018 YPK_4147 b97ddfc2376116b3f54ed4ceee071fb2 354 Gene3D G3DSA:3.40.50.2000 164 348 1.3E-66 T 12-10-2018 YPK_0671 e6465be51941e8a0b2e2fd71386a75d4 403 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 207 221 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_0671 e6465be51941e8a0b2e2fd71386a75d4 403 Gene3D G3DSA:3.90.1150.10 264 400 5.9E-40 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_0671 e6465be51941e8a0b2e2fd71386a75d4 403 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 13 399 9.9E-168 T 12-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 YPK_0671 e6465be51941e8a0b2e2fd71386a75d4 403 PIRSF PIRSF001434 2 400 5.9E-114 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_0671 e6465be51941e8a0b2e2fd71386a75d4 403 Gene3D G3DSA:3.40.640.10 7 263 1.4E-69 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0671 e6465be51941e8a0b2e2fd71386a75d4 403 SUPERFAMILY SSF53383 28 398 1.21E-88 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0671 e6465be51941e8a0b2e2fd71386a75d4 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 397 2.4E-111 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 1.7E-66 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 SUPERFAMILY SSF51905 1 365 8.81E-60 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 Gene3D G3DSA:3.30.390.30 338 450 2.0E-48 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 4.8E-29 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 4.8E-29 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 4.8E-29 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 4.8E-29 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 4.8E-29 T 12-10-2018 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 SUPERFAMILY SSF55424 336 450 4.98E-36 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 318 6.3E-69 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 2.7E-218 T 12-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 Gene3D G3DSA:3.50.50.60 5 318 1.2E-125 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 PIRSF PIRSF000350 1 447 1.0E-85 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 1.8E-34 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YPK_0114 8fc0ca4d924874e25d714a52a7bbfdf7 450 Gene3D G3DSA:3.50.50.60 144 261 1.2E-125 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 288 298 - T 12-10-2018 IPR018030 Fimbrial membrane usher, conserved site YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 SUPERFAMILY SSF141729 12 136 4.45E-28 T 12-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 Pfam PF13954 PapC N-terminal domain 13 159 3.5E-38 T 12-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 Pfam PF00577 Outer membrane usher protein 176 732 4.8E-193 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 Gene3D G3DSA:2.60.40.2610 647 737 4.1E-24 T 12-10-2018 YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 Pfam PF13953 PapC C-terminal domain 741 806 1.7E-24 T 12-10-2018 IPR025949 PapC-like, C-terminal domain YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 Gene3D G3DSA:2.60.40.2070 738 823 1.6E-27 T 12-10-2018 YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 Gene3D G3DSA:2.60.40.3110 246 335 2.8E-32 T 12-10-2018 YPK_2757 bf2ab7d4c984a438c738ebb20e7faf4d 823 Gene3D G3DSA:3.10.20.410 27 148 1.1E-38 T 12-10-2018 YPK_2621 f0a2e8c2a013d6f736753e664607add6 105 SMART SM00992 3 102 4.5E-36 T 12-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 YPK_2621 f0a2e8c2a013d6f736753e664607add6 105 Gene3D G3DSA:2.30.30.390 1 105 3.0E-39 T 12-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 YPK_2621 f0a2e8c2a013d6f736753e664607add6 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 36.691 T 12-10-2018 IPR022866 Heat shock protein HspQ YPK_2621 f0a2e8c2a013d6f736753e664607add6 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 96 3.6E-19 T 12-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 YPK_2621 f0a2e8c2a013d6f736753e664607add6 105 SUPERFAMILY SSF141255 4 96 6.02E-30 T 12-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 YPK_2621 f0a2e8c2a013d6f736753e664607add6 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 101 6.1E-32 T 12-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 YPK_2693 133e1570fd1e3e05e6402820997ef677 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 24 102 8.9E-34 T 12-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 YPK_2693 133e1570fd1e3e05e6402820997ef677 106 Gene3D G3DSA:3.30.1390.10 1 106 3.8E-47 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPK_2693 133e1570fd1e3e05e6402820997ef677 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 21 101 28.223 T 12-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS YPK_2693 133e1570fd1e3e05e6402820997ef677 106 SUPERFAMILY SSF54736 21 105 5.23E-33 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YPK_0380 84b4c9c911659250bc0840e856501387 369 Gene3D G3DSA:3.40.50.300 1 238 1.2E-74 T 12-10-2018 YPK_0380 84b4c9c911659250bc0840e856501387 369 SUPERFAMILY SSF52540 4 243 2.05E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0380 84b4c9c911659250bc0840e856501387 369 Pfam PF00005 ABC transporter 21 161 3.2E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0380 84b4c9c911659250bc0840e856501387 369 Gene3D G3DSA:2.40.50.140 292 345 2.2E-29 T 12-10-2018 YPK_0380 84b4c9c911659250bc0840e856501387 369 Pfam PF08402 TOBE domain 281 353 2.6E-11 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_0380 84b4c9c911659250bc0840e856501387 369 SUPERFAMILY SSF50331 236 362 4.86E-32 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_0380 84b4c9c911659250bc0840e856501387 369 SMART SM00382 28 211 7.6E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0380 84b4c9c911659250bc0840e856501387 369 Gene3D G3DSA:2.40.50.100 239 291 6.8E-19 T 12-10-2018 YPK_0380 84b4c9c911659250bc0840e856501387 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2067 1692d9e9e4269dfd39df8c2662fdcac8 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 308 1.1E-20 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_2067 1692d9e9e4269dfd39df8c2662fdcac8 333 SUPERFAMILY SSF52540 45 310 7.72E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2067 1692d9e9e4269dfd39df8c2662fdcac8 333 Pfam PF00005 ABC transporter 36 192 2.7E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2067 1692d9e9e4269dfd39df8c2662fdcac8 333 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2067 1692d9e9e4269dfd39df8c2662fdcac8 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 244 326 1.2E-24 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_2067 1692d9e9e4269dfd39df8c2662fdcac8 333 Gene3D G3DSA:3.40.50.300 12 329 1.2E-96 T 12-10-2018 YPK_2067 1692d9e9e4269dfd39df8c2662fdcac8 333 SMART SM00382 44 250 4.3E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3705 241751e87d874da801f732ae29d67c6a 388 Pfam PF05426 Alginate lyase 56 335 1.1E-76 T 12-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 YPK_3705 241751e87d874da801f732ae29d67c6a 388 Gene3D G3DSA:1.50.10.100 11 388 1.1E-119 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YPK_3705 241751e87d874da801f732ae29d67c6a 388 SUPERFAMILY SSF48230 63 338 2.84E-56 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 ProSitePatterns PS00622 LuxR-type HTH domain signature. 196 223 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 233 2.5E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 SUPERFAMILY SSF75516 13 162 1.16E-35 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 SUPERFAMILY SSF46894 174 242 2.41E-16 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 Pfam PF03472 Autoinducer binding domain 13 157 2.2E-31 T 12-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 SMART SM00421 179 236 7.1E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 Gene3D G3DSA:1.10.10.10 177 242 1.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 212 1.1E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 212 224 1.1E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 196 1.1E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0791 c31f12a54fe06305d8e3bacb05cd3a75 247 Gene3D G3DSA:3.30.450.80 3 176 2.6E-49 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPK_2551 bbb60b141bfe33944b240ec3fbeef41d 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 35.137 T 12-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 YPK_2551 bbb60b141bfe33944b240ec3fbeef41d 193 Gene3D G3DSA:2.70.40.10 1 162 5.7E-52 T 12-10-2018 IPR036157 dUTPase-like superfamily YPK_2551 bbb60b141bfe33944b240ec3fbeef41d 193 SUPERFAMILY SSF51283 1 193 5.83E-62 T 12-10-2018 IPR036157 dUTPase-like superfamily YPK_2551 bbb60b141bfe33944b240ec3fbeef41d 193 Pfam PF00692 dUTPase 79 185 1.5E-10 T 12-10-2018 IPR029054 dUTPase-like YPK_2551 bbb60b141bfe33944b240ec3fbeef41d 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 1.5E-70 T 12-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 Gene3D G3DSA:3.40.190.10 7 221 1.8E-73 T 12-10-2018 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 Gene3D G3DSA:3.40.190.10 103 192 1.8E-73 T 12-10-2018 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 4.9E-48 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 205 298 9.5E-33 T 12-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 SUPERFAMILY SSF53850 6 224 1.78E-70 T 12-10-2018 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 35.725 T 12-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 2.1E-56 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 Pfam PF08029 HisG, C-terminal domain 223 296 3.5E-24 T 12-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 12-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 SUPERFAMILY SSF54913 226 298 1.56E-21 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPK_2525 b24ddaf28bca15f0bd5ab6147a42608c 299 Gene3D G3DSA:3.30.70.120 226 299 6.9E-35 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPK_3518 f8995904fb8bc4ffec17be7655edd727 356 SUPERFAMILY SSF53756 6 351 2.47E-128 T 12-10-2018 YPK_3518 f8995904fb8bc4ffec17be7655edd727 356 Gene3D G3DSA:3.40.50.2000 9 161 2.4E-122 T 12-10-2018 YPK_3518 f8995904fb8bc4ffec17be7655edd727 356 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 347 1.1E-113 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3518 f8995904fb8bc4ffec17be7655edd727 356 Gene3D G3DSA:3.40.50.2000 162 318 2.4E-122 T 12-10-2018 YPK_3518 f8995904fb8bc4ffec17be7655edd727 356 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 5.6E-48 T 12-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3518 f8995904fb8bc4ffec17be7655edd727 356 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 319 4.0E-34 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 YPK_3518 f8995904fb8bc4ffec17be7655edd727 356 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 353 35.336 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 SUPERFAMILY SSF56059 83 347 5.05E-69 T 12-10-2018 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 4.2E-249 T 12-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 9.2E-85 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.4E-43 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 Gene3D G3DSA:3.30.1490.20 131 203 1.5E-157 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 SUPERFAMILY SSF51246 331 444 1.31E-43 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 1.3E-38 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 SMART SM00878 336 441 3.2E-65 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 Gene3D G3DSA:3.30.470.20 86 433 1.5E-157 T 12-10-2018 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 Gene3D G3DSA:3.40.50.20 1 85 5.2E-34 T 12-10-2018 YPK_0458 20e0a350306575ae2db63151ff35eccd 449 SUPERFAMILY SSF52440 1 113 3.74E-46 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 SUPERFAMILY SSF53383 135 493 8.94E-89 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 88 4.2E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 SUPERFAMILY SSF46785 26 90 5.07E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 Gene3D G3DSA:3.40.640.10 121 485 7.9E-117 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 62 3.6E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 78 3.6E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 Gene3D G3DSA:1.10.10.10 23 107 1.1E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 SMART SM00345 29 88 1.3E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1334 598e2dd058319ba234ab9ad706ad2674 501 Pfam PF00155 Aminotransferase class I and II 149 460 4.6E-25 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_1568 b65d7d1ca69076ddb0364b64161c8d8d 181 Gene3D G3DSA:1.20.120.1200 1 159 1.2E-47 T 12-10-2018 YPK_1568 b65d7d1ca69076ddb0364b64161c8d8d 181 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 157 4.5E-33 T 12-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1249 4d89e985b1600ee3d0b0aebd1d03c6c1 295 Pfam PF01380 SIS domain 127 208 2.9E-9 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_1249 4d89e985b1600ee3d0b0aebd1d03c6c1 295 Gene3D G3DSA:1.10.8.1080 219 295 1.2E-30 T 12-10-2018 YPK_1249 4d89e985b1600ee3d0b0aebd1d03c6c1 295 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 43.497 T 12-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 YPK_1249 4d89e985b1600ee3d0b0aebd1d03c6c1 295 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 12-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 YPK_1249 4d89e985b1600ee3d0b0aebd1d03c6c1 295 SUPERFAMILY SSF53697 4 249 5.12E-75 T 12-10-2018 YPK_1249 4d89e985b1600ee3d0b0aebd1d03c6c1 295 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 295 3.0E-129 T 12-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 YPK_1249 4d89e985b1600ee3d0b0aebd1d03c6c1 295 Gene3D G3DSA:3.40.50.10490 1 218 1.6E-84 T 12-10-2018 YPK_1249 4d89e985b1600ee3d0b0aebd1d03c6c1 295 SUPERFAMILY SSF46934 239 277 5.19E-5 T 12-10-2018 IPR009060 UBA-like superfamily GO:0005515 YPK_1195 882a1747f659a431a3aeb8447036c75f 466 Gene3D G3DSA:1.10.443.10 236 453 1.5E-9 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_1195 882a1747f659a431a3aeb8447036c75f 466 SUPERFAMILY SSF56349 131 359 2.3E-20 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_1195 882a1747f659a431a3aeb8447036c75f 466 Pfam PF00589 Phage integrase family 241 359 6.2E-7 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 SUPERFAMILY SSF51735 5 198 1.35E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 3.0E-26 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 SUPERFAMILY SSF52413 311 419 6.02E-26 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 416 2.3E-118 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 Gene3D G3DSA:3.40.50.720 205 420 6.7E-59 T 12-10-2018 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 PIRSF PIRSF500136 1 420 4.5E-147 T 12-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 Gene3D G3DSA:3.40.50.720 2 202 1.7E-63 T 12-10-2018 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 187 6.4E-58 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 SUPERFAMILY SSF48179 206 298 1.62E-27 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 PIRSF PIRSF000124 4 418 5.0E-73 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 SMART SM00984 324 420 2.9E-26 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 420 78.968 T 12-10-2018 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335 YPK_4030 0d1f7ab87ca2610d496b7bf0087ab552 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 419 2.0E-19 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 YPK_2673 f9ef027d8999afdf86d75026220d4689 364 Gene3D G3DSA:2.150.10.10 14 140 4.5E-13 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_2673 f9ef027d8999afdf86d75026220d4689 364 SUPERFAMILY SSF54523 274 361 2.51E-17 T 12-10-2018 YPK_2673 f9ef027d8999afdf86d75026220d4689 364 Gene3D G3DSA:3.30.1300.30 264 362 5.2E-19 T 12-10-2018 YPK_2673 f9ef027d8999afdf86d75026220d4689 364 PRINTS PR01756 Yersinia outer membrane adhesin signature 240 255 1.9E-6 T 12-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 YPK_2673 f9ef027d8999afdf86d75026220d4689 364 PRINTS PR01756 Yersinia outer membrane adhesin signature 267 283 1.9E-6 T 12-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 YPK_2673 f9ef027d8999afdf86d75026220d4689 364 PRINTS PR01756 Yersinia outer membrane adhesin signature 75 95 1.9E-6 T 12-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 YPK_2673 f9ef027d8999afdf86d75026220d4689 364 PRINTS PR01756 Yersinia outer membrane adhesin signature 173 191 1.9E-6 T 12-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 YPK_2673 f9ef027d8999afdf86d75026220d4689 364 Pfam PF03895 YadA-like membrane anchor domain 313 361 2.0E-7 T 12-10-2018 IPR005594 YadA-like, C-terminal YPK_2673 f9ef027d8999afdf86d75026220d4689 364 SUPERFAMILY SSF101967 27 136 6.8E-10 T 12-10-2018 YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 138 166 - T 12-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 PRINTS PR00812 Bacterial general secretion pathway protein F signature 39 51 8.0E-19 T 12-10-2018 IPR003004 GspF/PilC family YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 PRINTS PR00812 Bacterial general secretion pathway protein F signature 138 166 8.0E-19 T 12-10-2018 IPR003004 GspF/PilC family YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 PRINTS PR00812 Bacterial general secretion pathway protein F signature 358 377 8.0E-19 T 12-10-2018 IPR003004 GspF/PilC family YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 PRINTS PR00812 Bacterial general secretion pathway protein F signature 342 356 8.0E-19 T 12-10-2018 IPR003004 GspF/PilC family YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 Gene3D G3DSA:1.20.81.30 31 145 2.5E-28 T 12-10-2018 YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 Pfam PF00482 Type II secretion system (T2SS), protein F 44 166 1.3E-29 T 12-10-2018 IPR018076 Type II secretion system F domain YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 Pfam PF00482 Type II secretion system (T2SS), protein F 249 369 1.6E-27 T 12-10-2018 IPR018076 Type II secretion system F domain YPK_3500 4b18f7bc26a7aa7af410d74ebd3a415e 378 Gene3D G3DSA:1.20.81.30 231 341 2.0E-21 T 12-10-2018 YPK_3352 6d3b1670648edf151bb2419bd7b8bd10 243 Pfam PF13525 Outer membrane lipoprotein 28 236 2.3E-84 T 12-10-2018 IPR039565 Outer membrane lipoprotein BamD-like YPK_3352 6d3b1670648edf151bb2419bd7b8bd10 243 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 241 1.2E-88 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD YPK_3352 6d3b1670648edf151bb2419bd7b8bd10 243 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 242 38.778 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD YPK_3352 6d3b1670648edf151bb2419bd7b8bd10 243 SUPERFAMILY SSF48452 27 119 1.23E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3352 6d3b1670648edf151bb2419bd7b8bd10 243 Gene3D G3DSA:1.25.40.10 29 243 3.1E-62 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 Gene3D G3DSA:2.60.40.2070 757 832 5.6E-25 T 12-10-2018 YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 310 320 - T 12-10-2018 IPR018030 Fimbrial membrane usher, conserved site YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 Pfam PF13954 PapC N-terminal domain 35 178 1.6E-32 T 12-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 Gene3D G3DSA:2.60.40.2610 663 753 1.2E-12 T 12-10-2018 YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 Gene3D G3DSA:2.60.40.3110 268 356 3.9E-29 T 12-10-2018 YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 Pfam PF00577 Outer membrane usher protein 197 747 8.0E-160 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 Gene3D G3DSA:3.10.20.410 34 155 8.3E-21 T 12-10-2018 YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 Pfam PF13953 PapC C-terminal domain 760 814 4.1E-14 T 12-10-2018 IPR025949 PapC-like, C-terminal domain YPK_0052 f9f74fbd5aada04a3e873d283a8039f1 832 SUPERFAMILY SSF141729 34 154 1.44E-28 T 12-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YPK_2909 cc4c7f91dee002337e1df4d753472132 157 ProDom PD097062 ZINC RESISTANCE-ASSOCIATED PERIPLASMIC PRECURSOR SIGNAL YJAI SEQUENCING DIRECT DFFA 24 134 5.0E-60 T 12-10-2018 IPR020365 Zinc resistance-associated protein, ZraP GO:0008270|GO:0042597 YPK_2909 cc4c7f91dee002337e1df4d753472132 157 Gene3D G3DSA:1.20.120.1490 56 136 9.2E-30 T 12-10-2018 YPK_2909 cc4c7f91dee002337e1df4d753472132 157 Pfam PF13801 Heavy-metal resistance 13 132 4.1E-15 T 12-10-2018 IPR025961 Heavy-metal resistance protein YPK_1248 3390b09536e72be2cc62b31bfc5c7d4a 279 SUPERFAMILY SSF53697 94 276 5.09E-34 T 12-10-2018 YPK_1248 3390b09536e72be2cc62b31bfc5c7d4a 279 Pfam PF01380 SIS domain 125 254 3.8E-22 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_1248 3390b09536e72be2cc62b31bfc5c7d4a 279 Gene3D G3DSA:3.40.50.10490 94 279 7.4E-37 T 12-10-2018 YPK_1248 3390b09536e72be2cc62b31bfc5c7d4a 279 Gene3D G3DSA:1.10.10.10 1 79 1.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1248 3390b09536e72be2cc62b31bfc5c7d4a 279 SUPERFAMILY SSF46689 1 72 4.12E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1248 3390b09536e72be2cc62b31bfc5c7d4a 279 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 75 5.0E-25 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 Gene3D G3DSA:3.40.50.620 8 383 6.4E-161 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 Gene3D G3DSA:1.10.730.10 389 526 1.0E-32 T 12-10-2018 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 Gene3D G3DSA:2.40.50.140 566 675 6.3E-29 T 12-10-2018 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 Pfam PF09334 tRNA synthetases class I (M) 8 396 1.2E-162 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 Gene3D G3DSA:2.20.28.20 142 176 6.4E-161 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 SUPERFAMILY SSF47323 390 546 1.2E-43 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 535 2.3E-197 T 12-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 538 675 8.9E-45 T 12-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.118 T 12-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 SUPERFAMILY SSF57770 142 176 1.12E-12 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 SUPERFAMILY SSF50249 568 674 2.94E-28 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 2.1E-25 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 2.1E-25 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 2.1E-25 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 2.1E-25 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 2.1E-25 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 2.1E-25 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 Pfam PF01588 Putative tRNA binding domain 579 672 2.8E-21 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 YPK_2554 e5be36c449a9a879bd3dea0f6873bebd 675 SUPERFAMILY SSF52374 6 387 1.08E-100 T 12-10-2018 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 431 442 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 493 506 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 279 292 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 146 159 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 170 178 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 217 232 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 293 306 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 203 216 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 PRINTS PR00415 Aconitase family signature 372 386 5.8E-43 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 Gene3D G3DSA:1.10.1440.20 592 650 1.4E-17 T 12-10-2018 YPK_2030 61033dedf8980f63b460324229d03459 890 ProSitePatterns PS00450 Aconitase family signature 1. 427 443 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 SUPERFAMILY SSF53732 11 626 6.28E-223 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 Gene3D G3DSA:3.20.19.10 653 890 1.1E-105 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 SUPERFAMILY SSF52016 629 890 5.89E-90 T 12-10-2018 YPK_2030 61033dedf8980f63b460324229d03459 890 Pfam PF00330 Aconitase family (aconitate hydratase) 69 562 4.1E-183 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 Gene3D G3DSA:3.30.499.20 6 372 5.5E-160 T 12-10-2018 YPK_2030 61033dedf8980f63b460324229d03459 890 Gene3D G3DSA:3.30.499.10 373 590 8.5E-100 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 890 0.0 T 12-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 YPK_2030 61033dedf8980f63b460324229d03459 890 Pfam PF00694 Aconitase C-terminal domain 691 818 5.0E-49 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 YPK_2030 61033dedf8980f63b460324229d03459 890 ProSitePatterns PS01244 Aconitase family signature 2. 493 506 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YPK_1897 fd4b56c20e01b131d17ba2cd333e240f 80 TIGRFAM TIGR02979 phageshock_pspD: phage shock protein PspD 10 70 4.7E-34 T 12-10-2018 IPR014321 Phage shock protein, PspD YPK_1897 fd4b56c20e01b131d17ba2cd333e240f 80 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 10 70 1.2E-20 T 12-10-2018 IPR014321 Phage shock protein, PspD YPK_1295 ecf6ba48c422c5042f16534bb5990a41 211 PIRSF PIRSF006170 1 211 2.2E-56 T 12-10-2018 IPR026039 Uncharacterised protein family UPF0070 YPK_1295 ecf6ba48c422c5042f16534bb5990a41 211 Gene3D G3DSA:1.25.40.10 49 209 8.3E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1295 ecf6ba48c422c5042f16534bb5990a41 211 Pfam PF09976 Tetratricopeptide repeat-like domain 15 210 3.9E-56 T 12-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 YPK_1295 ecf6ba48c422c5042f16534bb5990a41 211 SUPERFAMILY SSF48452 97 196 1.52E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1049 e4b3bd4c3bd351800cb5e031ca1e2fb8 146 SUPERFAMILY SSF82649 3 143 2.56E-45 T 12-10-2018 YPK_1049 e4b3bd4c3bd351800cb5e031ca1e2fb8 146 Pfam PF02657 Fe-S metabolism associated domain 17 137 4.7E-40 T 12-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like YPK_1049 e4b3bd4c3bd351800cb5e031ca1e2fb8 146 Gene3D G3DSA:3.90.1010.10 1 143 1.7E-49 T 12-10-2018 YPK_1049 e4b3bd4c3bd351800cb5e031ca1e2fb8 146 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 2 140 1.9E-78 T 12-10-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Gene3D G3DSA:3.30.70.2250 42 108 9.8E-58 T 12-10-2018 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 ProSitePatterns PS00116 DNA polymerase family B signature. 548 556 - T 12-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Pfam PF03104 DNA polymerase family B, exonuclease domain 209 301 2.6E-5 T 12-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Pfam PF03104 DNA polymerase family B, exonuclease domain 75 165 1.5E-4 T 12-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Gene3D G3DSA:1.10.287.690 470 515 3.2E-25 T 12-10-2018 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 SUPERFAMILY SSF56672 390 783 6.67E-117 T 12-10-2018 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Pfam PF00136 DNA polymerase family B 383 742 6.2E-41 T 12-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Gene3D G3DSA:1.10.132.60 645 789 3.0E-61 T 12-10-2018 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 SUPERFAMILY SSF53098 5 394 5.22E-91 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Gene3D G3DSA:2.40.50.590 7 151 9.8E-58 T 12-10-2018 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Gene3D G3DSA:3.90.1600.10 353 460 4.6E-30 T 12-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Gene3D G3DSA:3.30.420.10 154 352 1.6E-72 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 SMART SM00486 151 560 4.0E-61 T 12-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 420 433 7.2E-10 T 12-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 546 554 7.2E-10 T 12-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 494 506 7.2E-10 T 12-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3546 fc227bf6b3952ff9ae6f8cf4bd71211b 789 Gene3D G3DSA:3.90.1600.30 516 642 2.6E-9 T 12-10-2018 YPK_0274 50b5dd43aeee585d1c81d00465906502 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 1.8E-31 T 12-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 YPK_0274 50b5dd43aeee585d1c81d00465906502 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 29.55 T 12-10-2018 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 YPK_0274 50b5dd43aeee585d1c81d00465906502 95 Gene3D G3DSA:3.40.1260.10 1 95 1.7E-30 T 12-10-2018 IPR027396 DsrEFH-like YPK_0274 50b5dd43aeee585d1c81d00465906502 95 Pfam PF04077 DsrH like protein 7 92 3.3E-29 T 12-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 YPK_0274 50b5dd43aeee585d1c81d00465906502 95 SUPERFAMILY SSF75169 1 95 9.42E-31 T 12-10-2018 IPR027396 DsrEFH-like YPK_1423 189fb37428d570ae4f68caff49f3dfd8 401 SUPERFAMILY SSF111369 54 265 1.11E-20 T 12-10-2018 YPK_1423 189fb37428d570ae4f68caff49f3dfd8 401 Gene3D G3DSA:2.40.30.170 220 318 4.7E-31 T 12-10-2018 YPK_1423 189fb37428d570ae4f68caff49f3dfd8 401 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 269 4.8E-17 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPK_1423 189fb37428d570ae4f68caff49f3dfd8 401 Gene3D G3DSA:2.40.420.20 319 397 4.6E-14 T 12-10-2018 YPK_1423 189fb37428d570ae4f68caff49f3dfd8 401 Gene3D G3DSA:1.10.287.470 97 187 1.1E-15 T 12-10-2018 YPK_1423 189fb37428d570ae4f68caff49f3dfd8 401 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 381 1.5E-48 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_2870 d94dbc02efa6cc505256a8dba134eb3b 278 SUPERFAMILY SSF52540 36 276 2.44E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2870 d94dbc02efa6cc505256a8dba134eb3b 278 Pfam PF00005 ABC transporter 53 207 1.7E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2870 d94dbc02efa6cc505256a8dba134eb3b 278 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 37 278 3.8E-112 T 12-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD YPK_2870 d94dbc02efa6cc505256a8dba134eb3b 278 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 255 277 8.5E-8 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPK_2870 d94dbc02efa6cc505256a8dba134eb3b 278 Gene3D G3DSA:3.40.50.300 21 276 3.4E-55 T 12-10-2018 YPK_2546 60ade9f1446368d6e320518989a44293 432 SUPERFAMILY SSF51905 1 253 2.93E-15 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2546 60ade9f1446368d6e320518989a44293 432 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 3 339 1.2E-116 T 12-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPK_2546 60ade9f1446368d6e320518989a44293 432 Gene3D G3DSA:3.50.50.60 1 420 2.1E-108 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 Pfam PF00117 Glutamine amidotransferase class-I 6 186 8.4E-44 T 12-10-2018 IPR017926 Glutamine amidotransferase YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 7.6E-6 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 7.6E-6 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 SUPERFAMILY SSF52317 3 190 4.01E-46 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 Gene3D G3DSA:3.40.50.880 1 192 5.1E-60 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 7.0E-14 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 7.0E-14 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 7.0E-14 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 52 61 2.1E-36 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 79 90 2.1E-36 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 104 112 2.1E-36 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 166 179 2.1E-36 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 4 18 2.1E-36 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 PRINTS PR00097 Anthranilate synthase component II signature 124 136 2.1E-36 T 12-10-2018 YPK_2043 ee1dcdc0482a4740359c80b115538d49 192 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 186 2.9E-55 T 12-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2404 85846acbe2497d1bfa6615f0634ee9e9 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 4.3E-29 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_2404 85846acbe2497d1bfa6615f0634ee9e9 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 4.3E-29 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_2404 85846acbe2497d1bfa6615f0634ee9e9 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 4.3E-29 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_2404 85846acbe2497d1bfa6615f0634ee9e9 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 4.3E-29 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_2404 85846acbe2497d1bfa6615f0634ee9e9 260 Pfam PF01311 Bacterial export proteins, family 1 14 246 1.5E-65 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_2404 85846acbe2497d1bfa6615f0634ee9e9 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 255 7.0E-74 T 12-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 SUPERFAMILY SSF55785 81 170 4.76E-8 T 12-10-2018 IPR035965 PAS domain superfamily YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 466 513 8.0E-28 T 12-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 Gene3D G3DSA:1.10.8.60 378 455 2.4E-19 T 12-10-2018 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 SMART SM00382 226 370 4.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 SUPERFAMILY SSF52540 206 447 1.52E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 SUPERFAMILY SSF46689 459 513 1.43E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 Gene3D G3DSA:1.10.10.60 457 514 1.1E-26 T 12-10-2018 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 Pfam PF00989 PAS fold 82 124 4.6E-5 T 12-10-2018 IPR013767 PAS fold GO:0006355 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 Pfam PF00158 Sigma-54 interaction domain 206 372 1.1E-60 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 419 428 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 Gene3D G3DSA:3.40.50.300 193 377 9.7E-60 T 12-10-2018 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 Gene3D G3DSA:3.30.450.20 82 190 3.6E-28 T 12-10-2018 YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 SMART SM00091 80 146 7.9E-6 T 12-10-2018 IPR000014 PAS domain YPK_1902 eb16ebfe5e73d908ee108ce0c96a41d4 525 Gene3D G3DSA:3.30.70.260 1 81 5.2E-26 T 12-10-2018 YPK_3340 6a9674f708f307586a8d7bca90f33438 388 SMART SM00967 149 224 2.2E-8 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 YPK_3340 6a9674f708f307586a8d7bca90f33438 388 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 150 222 1.3E-11 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 YPK_3340 6a9674f708f307586a8d7bca90f33438 388 SUPERFAMILY SSF75217 233 385 7.85E-40 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases YPK_3340 6a9674f708f307586a8d7bca90f33438 388 PIRSF PIRSF006280 1 386 2.1E-197 T 12-10-2018 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 YPK_3340 6a9674f708f307586a8d7bca90f33438 388 Gene3D G3DSA:3.40.1280.10 216 388 1.0E-40 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_3340 6a9674f708f307586a8d7bca90f33438 388 SUPERFAMILY SSF55315 142 219 2.19E-9 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like YPK_3340 6a9674f708f307586a8d7bca90f33438 388 Pfam PF00588 SpoU rRNA Methylase family 240 377 5.0E-31 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YPK_0506 57621bb28eac9587646224a967476fc1 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 6.1E-123 T 12-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 YPK_0506 57621bb28eac9587646224a967476fc1 241 Gene3D G3DSA:3.40.50.300 2 241 4.7E-72 T 12-10-2018 YPK_0506 57621bb28eac9587646224a967476fc1 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0506 57621bb28eac9587646224a967476fc1 241 Pfam PF00005 ABC transporter 20 166 5.6E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0506 57621bb28eac9587646224a967476fc1 241 SUPERFAMILY SSF52540 4 236 3.24E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0506 57621bb28eac9587646224a967476fc1 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 2.8E-8 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPK_0506 57621bb28eac9587646224a967476fc1 241 SMART SM00382 28 231 2.7E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1535 706aabb44dd3580870f752a38ad7d061 505 Gene3D G3DSA:3.60.20.10 2 414 3.2E-161 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_1535 706aabb44dd3580870f752a38ad7d061 505 PIRSF PIRSF000485 1 483 1.5E-169 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 YPK_1535 706aabb44dd3580870f752a38ad7d061 505 Pfam PF00156 Phosphoribosyl transferase domain 294 394 5.8E-8 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YPK_1535 706aabb44dd3580870f752a38ad7d061 505 SUPERFAMILY SSF53271 252 485 1.31E-72 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_1535 706aabb44dd3580870f752a38ad7d061 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 1.0E-161 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 YPK_1535 706aabb44dd3580870f752a38ad7d061 505 SUPERFAMILY SSF56235 2 259 1.2E-75 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_1535 706aabb44dd3580870f752a38ad7d061 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.614 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 YPK_1535 706aabb44dd3580870f752a38ad7d061 505 Pfam PF13522 Glutamine amidotransferase domain 65 210 4.8E-15 T 12-10-2018 YPK_1535 706aabb44dd3580870f752a38ad7d061 505 Gene3D G3DSA:3.40.50.2020 279 443 3.2E-161 T 12-10-2018 YPK_1400 25fe26e4149f44c9390fa2699ff522d2 297 PIRSF PIRSF001365 1 297 2.4E-66 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1400 25fe26e4149f44c9390fa2699ff522d2 297 Gene3D G3DSA:3.20.20.70 1 297 1.5E-102 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1400 25fe26e4149f44c9390fa2699ff522d2 297 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 12-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1400 25fe26e4149f44c9390fa2699ff522d2 297 SUPERFAMILY SSF51569 1 292 2.3E-72 T 12-10-2018 YPK_1400 25fe26e4149f44c9390fa2699ff522d2 297 SMART SM01130 3 294 1.1E-68 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1400 25fe26e4149f44c9390fa2699ff522d2 297 Pfam PF00701 Dihydrodipicolinate synthetase family 4 289 2.1E-51 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1400 25fe26e4149f44c9390fa2699ff522d2 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 7.0E-7 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1400 25fe26e4149f44c9390fa2699ff522d2 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 7.0E-7 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.872 T 12-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 SUPERFAMILY SSF52540 42 354 6.64E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 6.8E-179 T 12-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 SMART SM00962 100 296 5.6E-117 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 9.4E-76 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 SMART SM00963 1 86 1.9E-37 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 SUPERFAMILY SSF47446 298 431 2.62E-45 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.7E-23 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 Gene3D G3DSA:3.40.50.300 90 285 1.5E-124 T 12-10-2018 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 SMART SM00382 99 247 4.7E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 Pfam PF02978 Signal peptide binding domain 329 427 1.2E-32 T 12-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 Gene3D G3DSA:1.10.260.30 328 450 1.3E-45 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3365 d42747df73f46a667d65a3878f1ab49c 453 Gene3D G3DSA:1.20.120.140 4 305 1.5E-124 T 12-10-2018 YPK_1129 5995a3dc90617603d7a6d0f63cafbb6e 221 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1129 5995a3dc90617603d7a6d0f63cafbb6e 221 SUPERFAMILY SSF52540 2 194 6.09E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1129 5995a3dc90617603d7a6d0f63cafbb6e 221 Gene3D G3DSA:3.40.50.300 1 205 3.7E-40 T 12-10-2018 YPK_1129 5995a3dc90617603d7a6d0f63cafbb6e 221 Pfam PF00005 ABC transporter 19 150 3.4E-16 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1129 5995a3dc90617603d7a6d0f63cafbb6e 221 SMART SM00382 26 199 1.7E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 Gene3D G3DSA:3.40.120.10 221 318 2.4E-45 T 12-10-2018 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 2 543 0.0 T 12-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 440 9.2E-30 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 SUPERFAMILY SSF55957 432 543 5.49E-19 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 Gene3D G3DSA:3.30.310.50 443 546 3.0E-35 T 12-10-2018 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 SUPERFAMILY SSF53738 26 235 2.31E-51 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 7.6E-18 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 Gene3D G3DSA:3.40.120.10 319 442 1.5E-35 T 12-10-2018 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 180 6.4E-36 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 Gene3D G3DSA:3.40.120.10 12 218 7.7E-77 T 12-10-2018 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 SUPERFAMILY SSF53738 305 446 6.77E-32 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 SUPERFAMILY SSF53738 209 317 1.06E-8 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1152 cfdd163f36e27ab9596915208cc0363e 547 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 488 538 1.4E-7 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_0907 bfbdfcee66901668857c021340278097 128 SUPERFAMILY SSF55166 26 122 2.08E-15 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_0907 bfbdfcee66901668857c021340278097 128 Gene3D G3DSA:3.30.1380.10 8 122 4.3E-14 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_0907 bfbdfcee66901668857c021340278097 128 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 62 121 3.6E-11 T 12-10-2018 IPR039561 Peptidase M15C GO:0008233 YPK_3060 6782b50e89ed373e5fc8fdc8daff4023 159 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 156 1.0E-60 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_3060 6782b50e89ed373e5fc8fdc8daff4023 159 Gene3D G3DSA:2.30.110.20 3 158 2.2E-53 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_3060 6782b50e89ed373e5fc8fdc8daff4023 159 SUPERFAMILY SSF141452 26 158 1.44E-34 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_3060 6782b50e89ed373e5fc8fdc8daff4023 159 Pfam PF05638 Type VI secretion system effector, Hcp 28 143 3.5E-23 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 SUPERFAMILY SSF54686 3 133 4.84E-55 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 Gene3D G3DSA:3.90.1170.10 1 136 1.3E-55 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.821 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 9.2E-48 T 12-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 4.3E-60 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 1.0E-40 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 1.0E-40 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 1.0E-40 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0290 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 1.0E-40 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 Pfam PF13377 Periplasmic binding protein-like domain 176 337 9.2E-42 T 12-10-2018 YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 55 1.6E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 Gene3D G3DSA:1.10.260.40 1 67 1.1E-23 T 12-10-2018 YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 Gene3D G3DSA:3.40.50.2300 69 314 5.7E-84 T 12-10-2018 YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 SUPERFAMILY SSF47413 8 67 9.09E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 SUPERFAMILY SSF53822 68 340 9.42E-92 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 12-10-2018 YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 SMART SM00354 9 79 3.7E-27 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_4101 fa8bbcacffd89fa0b3f943e8d9c55428 342 Gene3D G3DSA:3.40.50.2300 168 297 5.7E-84 T 12-10-2018 YPK_1019 4c2fd3c3d4f590e118e45d3d42428c44 211 Pfam PF01323 DSBA-like thioredoxin domain 9 185 1.2E-6 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 YPK_1019 4c2fd3c3d4f590e118e45d3d42428c44 211 Gene3D G3DSA:3.40.30.10 3 211 1.6E-47 T 12-10-2018 YPK_1019 4c2fd3c3d4f590e118e45d3d42428c44 211 SUPERFAMILY SSF52833 4 192 6.1E-28 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_2677 480d15168e7aaadd8a146dbfcb608a34 760 Gene3D G3DSA:3.20.70.20 2 760 0.0 T 12-10-2018 YPK_2677 480d15168e7aaadd8a146dbfcb608a34 760 SUPERFAMILY SSF51998 4 758 2.35E-289 T 12-10-2018 YPK_2677 480d15168e7aaadd8a146dbfcb608a34 760 Pfam PF01228 Glycine radical 630 741 3.5E-43 T 12-10-2018 IPR001150 Glycine radical domain GO:0003824 YPK_2677 480d15168e7aaadd8a146dbfcb608a34 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 759 0.0 T 12-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 YPK_2677 480d15168e7aaadd8a146dbfcb608a34 760 Pfam PF02901 Pyruvate formate lyase-like 24 614 1.1E-205 T 12-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 YPK_2677 480d15168e7aaadd8a146dbfcb608a34 760 PIRSF PIRSF000379 8 760 0.0 T 12-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 YPK_2677 480d15168e7aaadd8a146dbfcb608a34 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 12-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 Pfam PF08264 Anticodon-binding domain of tRNA 685 840 4.0E-30 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 SUPERFAMILY SSF50677 204 403 3.03E-54 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 Gene3D G3DSA:1.10.730.20 640 929 2.8E-94 T 12-10-2018 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 929 21.367 T 12-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 SUPERFAMILY SSF47323 652 929 2.24E-79 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 843 3.8E-298 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 640 7.3E-222 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 Gene3D G3DSA:3.40.50.620 25 629 8.8E-230 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 SUPERFAMILY SSF52374 3 647 4.06E-136 T 12-10-2018 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 Pfam PF06827 Zinc finger found in FPG and IleRS 898 926 7.2E-10 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 Gene3D G3DSA:3.90.740.10 195 408 8.8E-230 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 1.1E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 526 539 1.1E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 1.1E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 1.1E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YPK_3588 4015c46e21954b3adaabcd4df6def05a 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 561 570 1.1E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 YPK_1065 0960116e65a5a41372ac8347665c024c 263 SUPERFAMILY SSF55920 3 255 4.06E-90 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like YPK_1065 0960116e65a5a41372ac8347665c024c 263 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 2.6E-108 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_1065 0960116e65a5a41372ac8347665c024c 263 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.208 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_1065 0960116e65a5a41372ac8347665c024c 263 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_1065 0960116e65a5a41372ac8347665c024c 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 1.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_1065 0960116e65a5a41372ac8347665c024c 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 1.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_1065 0960116e65a5a41372ac8347665c024c 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 1.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_1065 0960116e65a5a41372ac8347665c024c 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 1.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_1065 0960116e65a5a41372ac8347665c024c 263 Gene3D G3DSA:3.90.230.10 2 263 5.1E-117 T 12-10-2018 YPK_1065 0960116e65a5a41372ac8347665c024c 263 Pfam PF00557 Metallopeptidase family M24 13 242 8.4E-52 T 12-10-2018 IPR000994 Peptidase M24 YPK_2538 9ac1358e19e57f3911902d36e06e5742 604 Pfam PF06276 Ferric iron reductase FhuF-like transporter 421 578 3.3E-38 T 12-10-2018 IPR022770 Ferric iron reductase FhuF domain YPK_2538 9ac1358e19e57f3911902d36e06e5742 604 Pfam PF04183 IucA / IucC family 150 399 4.5E-73 T 12-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 YPK_2538 9ac1358e19e57f3911902d36e06e5742 604 Gene3D G3DSA:1.10.274.90 3 139 6.8E-43 T 12-10-2018 YPK_2538 9ac1358e19e57f3911902d36e06e5742 604 Gene3D G3DSA:1.10.510.40 388 595 1.3E-66 T 12-10-2018 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 Pfam PF04552 Sigma-54, DNA binding domain 317 475 3.4E-69 T 12-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 364 383 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 PRINTS PR00045 Sigma-54 factor signature 186 203 7.3E-32 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 PRINTS PR00045 Sigma-54 factor signature 376 388 7.3E-32 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 PRINTS PR00045 Sigma-54 factor signature 450 468 7.3E-32 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 PRINTS PR00045 Sigma-54 factor signature 392 403 7.3E-32 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 PIRSF PIRSF000774 1 477 6.9E-147 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 4.0E-15 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 Gene3D G3DSA:1.10.10.60 417 474 1.9E-22 T 12-10-2018 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 474 2.7E-156 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 455 462 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 Pfam PF04963 Sigma-54 factor, core binding domain 114 303 6.0E-60 T 12-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 YPK_0505 6d0a8219a363c0ca206e9aa9ca717a4c 477 Gene3D G3DSA:1.10.10.1330 116 252 1.3E-24 T 12-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily YPK_2132 c3561f73d268a220a8046db2b108f9a9 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 5.5E-86 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 YPK_2132 c3561f73d268a220a8046db2b108f9a9 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 12-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 YPK_2132 c3561f73d268a220a8046db2b108f9a9 213 Pfam PF01081 KDPG and KHG aldolase 9 203 1.3E-90 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 YPK_2132 c3561f73d268a220a8046db2b108f9a9 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 12-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 YPK_2132 c3561f73d268a220a8046db2b108f9a9 213 SUPERFAMILY SSF51569 4 209 4.76E-70 T 12-10-2018 YPK_2132 c3561f73d268a220a8046db2b108f9a9 213 Gene3D G3DSA:3.20.20.70 1 212 1.0E-74 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3048 c879b58300e092a41fb875c217b56088 648 SUPERFAMILY SSF52467 192 376 2.55E-41 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPK_3048 c879b58300e092a41fb875c217b56088 648 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 12 646 1.9E-280 T 12-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 YPK_3048 c879b58300e092a41fb875c217b56088 648 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 203 8.6E-33 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YPK_3048 c879b58300e092a41fb875c217b56088 648 Gene3D G3DSA:3.40.50.970 416 616 5.0E-48 T 12-10-2018 YPK_3048 c879b58300e092a41fb875c217b56088 648 Gene3D G3DSA:3.40.50.1220 221 395 3.1E-36 T 12-10-2018 YPK_3048 c879b58300e092a41fb875c217b56088 648 Gene3D G3DSA:3.40.50.970 5 216 4.2E-34 T 12-10-2018 YPK_3048 c879b58300e092a41fb875c217b56088 648 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 480 499 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YPK_3048 c879b58300e092a41fb875c217b56088 648 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 444 603 5.6E-40 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YPK_3048 c879b58300e092a41fb875c217b56088 648 SUPERFAMILY SSF52518 421 639 3.93E-54 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3048 c879b58300e092a41fb875c217b56088 648 SUPERFAMILY SSF52518 8 216 4.05E-33 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3048 c879b58300e092a41fb875c217b56088 648 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 227 360 1.0E-30 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 SUPERFAMILY SSF141868 399 631 1.83E-34 T 12-10-2018 IPR035919 EAL domain superfamily YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 Pfam PF00990 Diguanylate cyclase, GGDEF domain 224 375 3.0E-22 T 12-10-2018 IPR000160 GGDEF domain YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 Gene3D G3DSA:3.20.20.450 392 630 6.7E-33 T 12-10-2018 IPR035919 EAL domain superfamily YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 SMART SM00052 392 632 2.9E-24 T 12-10-2018 IPR001633 EAL domain YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 SUPERFAMILY SSF55073 230 383 3.92E-19 T 12-10-2018 IPR029787 Nucleotide cyclase YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 33 130 2.3E-33 T 12-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 Pfam PF00563 EAL domain 400 627 1.3E-37 T 12-10-2018 IPR001633 EAL domain YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 SMART SM00267 213 382 5.6E-17 T 12-10-2018 IPR000160 GGDEF domain YPK_0464 227a22eee4efd7716c7f584ccedbffc0 638 Gene3D G3DSA:3.30.70.270 207 383 9.9E-22 T 12-10-2018 YPK_3241 496887891a01b2fe4231020d6a0819af 318 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 240 1.3E-113 T 12-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 YPK_3241 496887891a01b2fe4231020d6a0819af 318 SUPERFAMILY SSF49503 124 282 7.71E-53 T 12-10-2018 IPR008972 Cupredoxin YPK_3241 496887891a01b2fe4231020d6a0819af 318 Pfam PF06481 COX Aromatic Rich Motif 240 286 5.2E-20 T 12-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 YPK_3241 496887891a01b2fe4231020d6a0819af 318 PIRSF PIRSF000292 1 314 5.9E-130 T 12-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 YPK_3241 496887891a01b2fe4231020d6a0819af 318 Gene3D G3DSA:1.10.287.90 28 112 3.6E-32 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3241 496887891a01b2fe4231020d6a0819af 318 Gene3D G3DSA:2.60.40.420 113 283 3.7E-59 T 12-10-2018 IPR008972 Cupredoxin YPK_3241 496887891a01b2fe4231020d6a0819af 318 SUPERFAMILY SSF81464 18 116 4.58E-23 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_0738 7345b7d9ffd986ad049b051cce3057ed 430 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 67 405 3.2E-72 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_0738 7345b7d9ffd986ad049b051cce3057ed 430 Gene3D G3DSA:2.40.50.100 91 234 5.3E-67 T 12-10-2018 YPK_0738 7345b7d9ffd986ad049b051cce3057ed 430 Gene3D G3DSA:1.10.287.470 126 199 5.3E-67 T 12-10-2018 YPK_0738 7345b7d9ffd986ad049b051cce3057ed 430 Gene3D G3DSA:2.40.420.20 317 407 7.9E-20 T 12-10-2018 YPK_0738 7345b7d9ffd986ad049b051cce3057ed 430 Gene3D G3DSA:2.40.30.170 85 316 5.3E-67 T 12-10-2018 YPK_0738 7345b7d9ffd986ad049b051cce3057ed 430 SUPERFAMILY SSF111369 81 329 6.41E-56 T 12-10-2018 YPK_0738 7345b7d9ffd986ad049b051cce3057ed 430 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 86 249 3.5E-8 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPK_2216 6ff9b974b039f624979009bded4dfd59 338 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 233 4.0E-33 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_2216 6ff9b974b039f624979009bded4dfd59 338 SUPERFAMILY SSF51735 1 330 8.1E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2216 6ff9b974b039f624979009bded4dfd59 338 Gene3D G3DSA:3.40.50.720 1 334 4.1E-63 T 12-10-2018 YPK_2787 d6e87075e7b2d148bdc5cdb12b33ef57 366 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 153 360 8.8E-39 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2787 d6e87075e7b2d148bdc5cdb12b33ef57 366 Gene3D G3DSA:1.10.3720.10 123 355 4.8E-18 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2787 d6e87075e7b2d148bdc5cdb12b33ef57 366 SUPERFAMILY SSF161098 130 346 6.67E-15 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3582 507eeba121553080ab299474a8261946 1077 SUPERFAMILY SSF52440 558 676 1.11E-48 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_3582 507eeba121553080ab299474a8261946 1077 SUPERFAMILY SSF48108 396 554 5.62E-53 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 Gene3D G3DSA:3.40.50.20 1 116 1.1E-50 T 12-10-2018 YPK_3582 507eeba121553080ab299474a8261946 1077 Gene3D G3DSA:1.10.1030.10 404 522 8.6E-39 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 Gene3D G3DSA:3.30.470.20 119 403 2.3E-132 T 12-10-2018 YPK_3582 507eeba121553080ab299474a8261946 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_3582 507eeba121553080ab299474a8261946 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_3582 507eeba121553080ab299474a8261946 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.4E-76 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_3582 507eeba121553080ab299474a8261946 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 5.7E-37 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_3582 507eeba121553080ab299474a8261946 1077 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.341 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 SUPERFAMILY SSF52335 939 1071 1.7E-34 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YPK_3582 507eeba121553080ab299474a8261946 1077 SUPERFAMILY SSF52440 1 127 5.75E-50 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_3582 507eeba121553080ab299474a8261946 1077 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.5E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.5E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.5E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.5E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.5E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.5E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.5E-64 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 Pfam PF02142 MGS-like domain 957 1041 4.7E-18 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain YPK_3582 507eeba121553080ab299474a8261946 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_3582 507eeba121553080ab299474a8261946 1077 SMART SM01096 424 547 2.5E-74 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 Gene3D G3DSA:3.40.50.1380 937 1073 3.3E-35 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YPK_3582 507eeba121553080ab299474a8261946 1077 Gene3D G3DSA:3.30.470.20 666 936 1.2E-124 T 12-10-2018 YPK_3582 507eeba121553080ab299474a8261946 1077 SUPERFAMILY SSF56059 674 934 4.77E-104 T 12-10-2018 YPK_3582 507eeba121553080ab299474a8261946 1077 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 2.0E-39 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3582 507eeba121553080ab299474a8261946 1077 SUPERFAMILY SSF56059 128 401 2.3E-109 T 12-10-2018 YPK_3582 507eeba121553080ab299474a8261946 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 YPK_3582 507eeba121553080ab299474a8261946 1077 Gene3D G3DSA:3.40.50.20 524 663 2.4E-64 T 12-10-2018 YPK_3582 507eeba121553080ab299474a8261946 1077 SMART SM00851 956 1042 1.3E-30 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain YPK_3582 507eeba121553080ab299474a8261946 1077 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.15 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_0858 39e4491dab8dbdcaafabf48cef276706 218 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 4.0E-69 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YPK_0858 39e4491dab8dbdcaafabf48cef276706 218 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.577 T 12-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YPK_0858 39e4491dab8dbdcaafabf48cef276706 218 Gene3D G3DSA:3.40.50.1360 7 207 3.6E-75 T 12-10-2018 YPK_0858 39e4491dab8dbdcaafabf48cef276706 218 SUPERFAMILY SSF75445 127 198 2.49E-23 T 12-10-2018 YPK_0858 39e4491dab8dbdcaafabf48cef276706 218 Gene3D G3DSA:3.30.70.260 125 196 3.6E-75 T 12-10-2018 YPK_0858 39e4491dab8dbdcaafabf48cef276706 218 SUPERFAMILY SSF100950 1 146 2.56E-48 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_0858 39e4491dab8dbdcaafabf48cef276706 218 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 1.1E-57 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YPK_0639 814043820431b8a1da61e983a23c12c1 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 5.4E-28 T 12-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 YPK_0639 814043820431b8a1da61e983a23c12c1 119 SMART SM00905 4 114 3.5E-47 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 YPK_0639 814043820431b8a1da61e983a23c12c1 119 SUPERFAMILY SSF55620 1 115 1.67E-36 T 12-10-2018 YPK_0639 814043820431b8a1da61e983a23c12c1 119 Gene3D G3DSA:3.30.1130.10 1 119 6.7E-46 T 12-10-2018 YPK_0639 814043820431b8a1da61e983a23c12c1 119 Pfam PF02152 Dihydroneopterin aldolase 4 113 2.2E-31 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 YPK_0639 814043820431b8a1da61e983a23c12c1 119 TIGRFAM TIGR00526 folB_dom: FolB domain 1 117 4.0E-40 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 YPK_0599 442894de4ecf0722638827a5ba1ae12e 410 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 246 259 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 YPK_0599 442894de4ecf0722638827a5ba1ae12e 410 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 240 264 9.6E-11 T 12-10-2018 YPK_0599 442894de4ecf0722638827a5ba1ae12e 410 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 174 198 9.6E-11 T 12-10-2018 YPK_0599 442894de4ecf0722638827a5ba1ae12e 410 Gene3D G3DSA:3.90.1150.10 51 382 3.8E-92 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_0599 442894de4ecf0722638827a5ba1ae12e 410 Gene3D G3DSA:3.40.640.10 74 296 3.8E-92 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0599 442894de4ecf0722638827a5ba1ae12e 410 Pfam PF00155 Aminotransferase class I and II 55 394 2.9E-58 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_0599 442894de4ecf0722638827a5ba1ae12e 410 SUPERFAMILY SSF53383 50 398 7.89E-93 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2039 3589059901eb6918978f9c40ba80220e 344 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 133 147 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 YPK_2039 3589059901eb6918978f9c40ba80220e 344 SUPERFAMILY SSF55120 95 259 5.55E-45 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_2039 3589059901eb6918978f9c40ba80220e 344 Pfam PF01479 S4 domain 30 70 3.4E-11 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_2039 3589059901eb6918978f9c40ba80220e 344 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 99 259 5.1E-63 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 YPK_2039 3589059901eb6918978f9c40ba80220e 344 Gene3D G3DSA:3.10.290.10 26 87 1.1E-20 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_2039 3589059901eb6918978f9c40ba80220e 344 Gene3D G3DSA:3.30.2350.10 89 277 1.1E-53 T 12-10-2018 YPK_2039 3589059901eb6918978f9c40ba80220e 344 SUPERFAMILY SSF55174 31 124 2.21E-13 T 12-10-2018 YPK_2039 3589059901eb6918978f9c40ba80220e 344 SMART SM00363 29 100 6.4E-10 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_2039 3589059901eb6918978f9c40ba80220e 344 Pfam PF00849 RNA pseudouridylate synthase 95 225 1.9E-17 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_2172 0dcbaeb2bf318c09553e07b356ec4400 291 SUPERFAMILY SSF51695 24 290 2.88E-49 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_2172 0dcbaeb2bf318c09553e07b356ec4400 291 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 29 285 8.1E-18 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YPK_2172 0dcbaeb2bf318c09553e07b356ec4400 291 Gene3D G3DSA:3.20.20.190 15 291 3.8E-36 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_2489 46182cffe27e49c4c56efb16947f2e5d 94 SUPERFAMILY SSF54909 1 81 1.64E-13 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_2489 46182cffe27e49c4c56efb16947f2e5d 94 Pfam PF03795 YCII-related domain 1 79 3.2E-10 T 12-10-2018 IPR005545 YCII-related YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 SUPERFAMILY SSF46785 4 110 6.16E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 Gene3D G3DSA:3.40.190.290 89 294 2.0E-63 T 12-10-2018 YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 1.7E-110 T 12-10-2018 IPR017685 HTH-type transcriptional regulator ArgP YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 Gene3D G3DSA:1.10.10.10 2 83 1.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 Pfam PF03466 LysR substrate binding domain 93 287 3.4E-13 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 9.3E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 9.3E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 9.3E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 SUPERFAMILY SSF53850 93 290 2.53E-19 T 12-10-2018 YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 6.7E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0857 92db65c5b5d3ac6c726effcea5ab76f8 302 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 296 57.444 T 12-10-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 SUPERFAMILY SSF46785 4 84 2.26E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 Gene3D G3DSA:3.40.190.10 90 284 6.9E-57 T 12-10-2018 YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 SUPERFAMILY SSF53850 90 301 1.15E-40 T 12-10-2018 YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 Gene3D G3DSA:3.40.190.10 165 272 6.9E-57 T 12-10-2018 YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 Gene3D G3DSA:1.10.10.10 1 86 1.8E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 6.1E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.9E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.9E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.9E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1982 bc5fa479b4f51ee0525a74aef4e3317b 304 Pfam PF03466 LysR substrate binding domain 89 296 1.7E-42 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2618 f345a070c025c027d7eda26b5e1ab93c 109 Gene3D G3DSA:1.10.10.370 39 109 1.6E-32 T 12-10-2018 YPK_2618 f345a070c025c027d7eda26b5e1ab93c 109 Pfam PF04358 DsrC like protein 3 109 1.1E-46 T 12-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE YPK_2618 f345a070c025c027d7eda26b5e1ab93c 109 PIRSF PIRSF006223 2 109 1.5E-47 T 12-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE YPK_2618 f345a070c025c027d7eda26b5e1ab93c 109 SUPERFAMILY SSF69721 2 109 2.88E-42 T 12-10-2018 IPR025526 DsrC-like domain superfamily YPK_2618 f345a070c025c027d7eda26b5e1ab93c 109 Gene3D G3DSA:3.30.1420.10 1 37 2.3E-12 T 12-10-2018 YPK_2618 f345a070c025c027d7eda26b5e1ab93c 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 109 4.5E-51 T 12-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE YPK_0518 c657bb0a3af6952bcdc5da8b910bd65b 420 SUPERFAMILY SSF55205 1 419 2.62E-147 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 YPK_0518 c657bb0a3af6952bcdc5da8b910bd65b 420 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 2.4E-186 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_0518 c657bb0a3af6952bcdc5da8b910bd65b 420 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 44.564 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_0518 c657bb0a3af6952bcdc5da8b910bd65b 420 Gene3D G3DSA:3.65.10.10 7 414 2.4E-174 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 YPK_0518 c657bb0a3af6952bcdc5da8b910bd65b 420 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 407 6.4E-127 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 YPK_0518 c657bb0a3af6952bcdc5da8b910bd65b 420 Gene3D G3DSA:3.65.10.10 21 229 2.4E-174 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 YPK_3098 ce49dafb253f3587bb6706f985cdba4b 236 Pfam PF14464 Prokaryotic homologs of the JAB domain 4 99 9.1E-16 T 12-10-2018 IPR028090 JAB domain, prokaryotic YPK_3098 ce49dafb253f3587bb6706f985cdba4b 236 Gene3D G3DSA:3.40.140.10 1 111 1.7E-21 T 12-10-2018 YPK_3098 ce49dafb253f3587bb6706f985cdba4b 236 Gene3D G3DSA:3.90.1720.10 112 235 2.9E-12 T 12-10-2018 YPK_3098 ce49dafb253f3587bb6706f985cdba4b 236 SUPERFAMILY SSF102712 2 103 3.4E-23 T 12-10-2018 YPK_3098 ce49dafb253f3587bb6706f985cdba4b 236 Pfam PF00877 NlpC/P60 family 116 230 5.1E-20 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain YPK_3098 ce49dafb253f3587bb6706f985cdba4b 236 SMART SM00232 1 124 1.5E-20 T 12-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 YPK_3098 ce49dafb253f3587bb6706f985cdba4b 236 SUPERFAMILY SSF54001 112 231 3.83E-15 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YPK_3527 b833ba7b181871873622463393d0e29c 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 152 3.5E-64 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 YPK_3527 b833ba7b181871873622463393d0e29c 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 141 8.0E-80 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 YPK_3527 b833ba7b181871873622463393d0e29c 152 SUPERFAMILY SSF89447 1 138 4.5E-46 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily YPK_3527 b833ba7b181871873622463393d0e29c 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 58.15 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 YPK_3527 b833ba7b181871873622463393d0e29c 152 Gene3D G3DSA:2.40.330.20 1 150 1.8E-43 T 12-10-2018 IPR038619 MraZ superfamily YPK_3527 b833ba7b181871873622463393d0e29c 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 2.6E-24 T 12-10-2018 IPR020603 MraZ domain YPK_3527 b833ba7b181871873622463393d0e29c 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 142 1.5E-20 T 12-10-2018 IPR020603 MraZ domain YPK_0971 c4e323c10d60c5cfe9e74ceb6b84f0f2 283 SUPERFAMILY SSF161098 10 283 3.18E-68 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0971 c4e323c10d60c5cfe9e74ceb6b84f0f2 283 Gene3D G3DSA:1.10.3720.10 5 270 2.9E-61 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0971 c4e323c10d60c5cfe9e74ceb6b84f0f2 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 276 4.5E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2128 8c06f87cad246fd26426e7de709cc26b 634 SMART SM00491 474 603 2.4E-54 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 YPK_2128 8c06f87cad246fd26426e7de709cc26b 634 SMART SM00487 16 342 0.0019 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_2128 8c06f87cad246fd26426e7de709cc26b 634 SUPERFAMILY SSF52540 13 232 4.08E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2128 8c06f87cad246fd26426e7de709cc26b 634 Pfam PF06733 DEAD_2 181 247 6.5E-5 T 12-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 YPK_2128 8c06f87cad246fd26426e7de709cc26b 634 Gene3D G3DSA:3.40.50.300 18 283 3.2E-46 T 12-10-2018 YPK_2128 8c06f87cad246fd26426e7de709cc26b 634 Pfam PF13307 Helicase C-terminal domain 459 616 3.4E-34 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 YPK_2128 8c06f87cad246fd26426e7de709cc26b 634 Gene3D G3DSA:3.40.50.300 440 631 1.4E-35 T 12-10-2018 YPK_2128 8c06f87cad246fd26426e7de709cc26b 634 SUPERFAMILY SSF52540 40 598 7.52E-10 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2275 741c269dd43678d014ebd71ff90f569d 449 SUPERFAMILY SSF49401 269 446 7.95E-8 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_2275 741c269dd43678d014ebd71ff90f569d 449 PIRSF PIRSF029766 1 449 1.4E-196 T 12-10-2018 IPR011228 Uncharacterised conserved protein UCP029766 YPK_2275 741c269dd43678d014ebd71ff90f569d 449 Pfam PF00419 Fimbrial protein 263 449 2.5E-37 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_0096 05d74d1cf2321ac67797ce71a57c0527 572 PIRSF PIRSF001432 1 565 2.6E-279 T 12-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 YPK_0096 05d74d1cf2321ac67797ce71a57c0527 572 Gene3D G3DSA:2.30.30.880 69 562 0.0 T 12-10-2018 YPK_0096 05d74d1cf2321ac67797ce71a57c0527 572 Pfam PF06917 Periplasmic pectate lyase 18 572 0.0 T 12-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 YPK_0096 05d74d1cf2321ac67797ce71a57c0527 572 Gene3D G3DSA:1.50.10.20 27 527 0.0 T 12-10-2018 YPK_0096 05d74d1cf2321ac67797ce71a57c0527 572 Gene3D G3DSA:2.20.25.430 281 397 0.0 T 12-10-2018 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 SMART SM00981 76 166 2.9E-22 T 12-10-2018 IPR004114 THUMP domain GO:0003723 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 SUPERFAMILY SSF143437 1 174 8.89E-47 T 12-10-2018 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Gene3D G3DSA:3.40.50.620 176 396 2.1E-53 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 374 1.2E-128 T 12-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 SUPERFAMILY SSF52402 175 373 6.17E-42 T 12-10-2018 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Gene3D G3DSA:3.30.2130.30 1 175 1.4E-34 T 12-10-2018 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 176 370 2.9E-79 T 12-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Gene3D G3DSA:3.40.250.10 397 483 4.4E-10 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 483 230.324 T 12-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 384 483 3.9E-43 T 12-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 Pfam PF02926 THUMP domain 29 162 1.5E-23 T 12-10-2018 IPR004114 THUMP domain GO:0003723 YPK_3250 1aa1d2a8819dc6accb26e4f90dcafe2c 483 SUPERFAMILY SSF52821 392 482 3.01E-12 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_3497 b15141bb76e44243fa6623cbcee147a6 302 PIRSF PIRSF006250 17 302 2.6E-103 T 12-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 YPK_3497 b15141bb76e44243fa6623cbcee147a6 302 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 130 300 1.4E-59 T 12-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 YPK_3497 b15141bb76e44243fa6623cbcee147a6 302 Gene3D G3DSA:3.90.1170.20 21 300 6.2E-118 T 12-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 YPK_3497 b15141bb76e44243fa6623cbcee147a6 302 Gene3D G3DSA:3.20.20.70 139 291 6.2E-118 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3497 b15141bb76e44243fa6623cbcee147a6 302 SUPERFAMILY SSF51690 130 301 5.1E-57 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 YPK_3497 b15141bb76e44243fa6623cbcee147a6 302 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 301 2.8E-97 T 12-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 YPK_3497 b15141bb76e44243fa6623cbcee147a6 302 SUPERFAMILY SSF54675 14 129 5.49E-32 T 12-10-2018 YPK_3497 b15141bb76e44243fa6623cbcee147a6 302 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 43 128 3.4E-26 T 12-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 YPK_0140 e68a368cb529544c9f0ac8c48709520b 197 Pfam PF01914 MarC family integral membrane protein 2 193 4.5E-58 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YPK_0140 e68a368cb529544c9f0ac8c48709520b 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 191 3.9E-31 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YPK_1169 4ca9726bdcf4518d64f5fae1cee2e085 245 Pfam PF03746 LamB/YcsF family 3 235 5.4E-94 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 YPK_1169 4ca9726bdcf4518d64f5fae1cee2e085 245 Gene3D G3DSA:3.20.20.370 1 245 5.9E-101 T 12-10-2018 YPK_1169 4ca9726bdcf4518d64f5fae1cee2e085 245 SUPERFAMILY SSF88713 2 243 2.52E-93 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YPK_1169 4ca9726bdcf4518d64f5fae1cee2e085 245 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 240 42.935 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 YPK_1451 8ca86850cb89e4b356547d220430d845 218 Gene3D G3DSA:3.40.50.10610 23 189 6.1E-69 T 12-10-2018 YPK_1451 8ca86850cb89e4b356547d220430d845 218 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 10 209 8.9E-98 T 12-10-2018 IPR008517 Protein of unknown function DUF799 YPK_2121 2c23978e623e648918887d5d65a0a12d 228 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 227 1.9E-71 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 YPK_2121 2c23978e623e648918887d5d65a0a12d 228 SUPERFAMILY SSF63848 122 227 5.36E-32 T 12-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 YPK_2121 2c23978e623e648918887d5d65a0a12d 228 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 228 29.01 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 YPK_2121 2c23978e623e648918887d5d65a0a12d 228 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 102 3.3E-34 T 12-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 YPK_2121 2c23978e623e648918887d5d65a0a12d 228 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 124 224 4.7E-31 T 12-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 YPK_2121 2c23978e623e648918887d5d65a0a12d 228 Gene3D G3DSA:3.30.750.120 1 113 2.1E-41 T 12-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily YPK_2121 2c23978e623e648918887d5d65a0a12d 228 Gene3D G3DSA:2.160.20.70 119 228 2.1E-29 T 12-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 YPK_1614 1150c775df713f58995966457d4adb8d 334 SUPERFAMILY SSF47413 7 65 1.97E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1614 1150c775df713f58995966457d4adb8d 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 54 3.7E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1614 1150c775df713f58995966457d4adb8d 334 Gene3D G3DSA:1.10.260.40 2 65 9.8E-22 T 12-10-2018 YPK_1614 1150c775df713f58995966457d4adb8d 334 Gene3D G3DSA:3.40.50.2300 67 316 7.7E-41 T 12-10-2018 YPK_1614 1150c775df713f58995966457d4adb8d 334 Gene3D G3DSA:3.40.50.2300 168 296 7.7E-41 T 12-10-2018 YPK_1614 1150c775df713f58995966457d4adb8d 334 SUPERFAMILY SSF53822 65 319 8.78E-40 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1614 1150c775df713f58995966457d4adb8d 334 Pfam PF13407 Periplasmic binding protein domain 68 314 8.3E-16 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_1614 1150c775df713f58995966457d4adb8d 334 SMART SM00354 7 77 4.5E-25 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_2139 44defdb5e381c8851e8b96979b05cb02 438 Gene3D G3DSA:3.10.450.350 178 280 2.5E-31 T 12-10-2018 YPK_2139 44defdb5e381c8851e8b96979b05cb02 438 Gene3D G3DSA:2.70.70.10 282 411 9.2E-48 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_2139 44defdb5e381c8851e8b96979b05cb02 438 Pfam PF04225 Opacity-associated protein A LysM-like domain 95 159 1.6E-6 T 12-10-2018 IPR007340 Opacity-associated protein A YPK_2139 44defdb5e381c8851e8b96979b05cb02 438 SUPERFAMILY SSF51261 162 406 1.31E-69 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_2139 44defdb5e381c8851e8b96979b05cb02 438 Pfam PF01551 Peptidase family M23 311 405 1.3E-33 T 12-10-2018 IPR016047 Peptidase M23 YPK_2139 44defdb5e381c8851e8b96979b05cb02 438 Gene3D G3DSA:3.10.450.350 83 173 2.6E-12 T 12-10-2018 YPK_2139 44defdb5e381c8851e8b96979b05cb02 438 SMART SM00257 96 141 2.9E-5 T 12-10-2018 IPR018392 LysM domain YPK_2139 44defdb5e381c8851e8b96979b05cb02 438 Pfam PF08525 Opacity-associated protein A N-terminal motif 12 39 5.9E-8 T 12-10-2018 IPR013731 Opacity-associated protein A, N-terminal YPK_1411 d64d9f39cf48f3bf9ab5f8b1bd1eb487 363 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 1.8E-125 T 12-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 YPK_1411 d64d9f39cf48f3bf9ab5f8b1bd1eb487 363 SMART SM00382 27 214 1.3E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1411 d64d9f39cf48f3bf9ab5f8b1bd1eb487 363 SUPERFAMILY SSF52540 3 244 1.16E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1411 d64d9f39cf48f3bf9ab5f8b1bd1eb487 363 Pfam PF00005 ABC transporter 18 164 8.2E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1411 d64d9f39cf48f3bf9ab5f8b1bd1eb487 363 Gene3D G3DSA:3.40.50.300 2 263 5.8E-81 T 12-10-2018 YPK_1411 d64d9f39cf48f3bf9ab5f8b1bd1eb487 363 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1411 d64d9f39cf48f3bf9ab5f8b1bd1eb487 363 SUPERFAMILY SSF50331 239 326 2.15E-9 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_3986 e0a23c85c9530c4e3cb040ea36710156 84 Gene3D G3DSA:3.30.110.40 1 80 4.6E-33 T 12-10-2018 IPR036868 TusA-like domain superfamily YPK_3986 e0a23c85c9530c4e3cb040ea36710156 84 SUPERFAMILY SSF64307 4 80 3.01E-27 T 12-10-2018 IPR036868 TusA-like domain superfamily YPK_3986 e0a23c85c9530c4e3cb040ea36710156 84 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 12-10-2018 IPR001455 TusA-like domain YPK_3986 e0a23c85c9530c4e3cb040ea36710156 84 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 3 81 29.742 T 12-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 YPK_3986 e0a23c85c9530c4e3cb040ea36710156 84 Pfam PF01206 Sulfurtransferase TusA 10 79 1.5E-26 T 12-10-2018 IPR001455 TusA-like domain YPK_1447 eb065307b6d08869cf21e8dc0d903ac3 174 SUPERFAMILY SSF81342 3 174 9.42E-29 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YPK_1447 eb065307b6d08869cf21e8dc0d903ac3 174 Pfam PF01292 Prokaryotic cytochrome b561 4 173 5.3E-22 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 Gene3D G3DSA:3.40.50.620 194 514 3.1E-114 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 371 2.2E-123 T 12-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 7.7E-41 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 Pfam PF00733 Asparagine synthase 212 366 2.3E-58 T 12-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 Gene3D G3DSA:3.60.20.10 2 193 9.7E-75 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 SUPERFAMILY SSF56235 1 196 1.89E-57 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 PIRSF PIRSF001589 1 367 2.4E-108 T 12-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 PIRSF PIRSF001589 362 505 2.3E-28 T 12-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 YPK_3001 8541d1cd6ca788bb775597bdae8c5931 554 SUPERFAMILY SSF52402 212 483 1.13E-74 T 12-10-2018 YPK_1628 744fe6bcb05f48e5fd3234a8b943cf2b 133 SUPERFAMILY SSF47413 11 77 9.73E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1628 744fe6bcb05f48e5fd3234a8b943cf2b 133 Gene3D G3DSA:1.10.260.40 11 79 2.6E-18 T 12-10-2018 YPK_1628 744fe6bcb05f48e5fd3234a8b943cf2b 133 SMART SM00530 19 74 1.2E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1628 744fe6bcb05f48e5fd3234a8b943cf2b 133 Pfam PF01381 Helix-turn-helix 20 74 3.9E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_3607 66844b7c179158fcbce27dfc838788dd 155 PIRSF PIRSF003174 1 155 2.6E-66 T 12-10-2018 IPR010292 Uncharacterised protein family CreA YPK_3607 66844b7c179158fcbce27dfc838788dd 155 Pfam PF05981 CreA protein 24 155 1.8E-57 T 12-10-2018 IPR010292 Uncharacterised protein family CreA YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 Gene3D G3DSA:2.30.33.40 1 97 1.0E-36 T 12-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 SUPERFAMILY SSF50129 1 96 3.06E-31 T 12-10-2018 IPR011032 GroES-like superfamily YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.991 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 8.7E-30 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 12-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 SMART SM00883 2 95 1.1E-48 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 PRINTS PR00297 10kDa chaperonin signature 60 72 1.7E-27 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 PRINTS PR00297 10kDa chaperonin signature 25 46 1.7E-27 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 PRINTS PR00297 10kDa chaperonin signature 3 18 1.7E-27 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YPK_3823 03d2438c4a87a8801d6649c3c51a021d 97 PRINTS PR00297 10kDa chaperonin signature 82 95 1.7E-27 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 YPK_3161 8f0d4507047df8a8f69a79c5df35551f 289 Pfam PF14561 Tetratricopeptide repeat 200 289 3.6E-30 T 12-10-2018 YPK_3161 8f0d4507047df8a8f69a79c5df35551f 289 Gene3D G3DSA:3.40.30.10 3 111 3.8E-27 T 12-10-2018 YPK_3161 8f0d4507047df8a8f69a79c5df35551f 289 SUPERFAMILY SSF48452 120 242 1.23E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3161 8f0d4507047df8a8f69a79c5df35551f 289 Pfam PF14559 Tetratricopeptide repeat 124 195 3.2E-18 T 12-10-2018 YPK_3161 8f0d4507047df8a8f69a79c5df35551f 289 SUPERFAMILY SSF52833 4 113 5.69E-30 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_3161 8f0d4507047df8a8f69a79c5df35551f 289 Gene3D G3DSA:1.25.40.10 202 289 6.2E-26 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3161 8f0d4507047df8a8f69a79c5df35551f 289 Pfam PF00085 Thioredoxin 7 107 4.9E-18 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 YPK_3161 8f0d4507047df8a8f69a79c5df35551f 289 Gene3D G3DSA:1.25.40.10 112 201 1.0E-22 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2079 36fafdf9d1ab30541e5d0e0d34a785e0 154 SUPERFAMILY SSF54427 25 130 6.0E-35 T 12-10-2018 IPR032710 NTF2-like domain superfamily YPK_2079 36fafdf9d1ab30541e5d0e0d34a785e0 154 Gene3D G3DSA:3.10.450.50 2 154 1.9E-51 T 12-10-2018 YPK_2079 36fafdf9d1ab30541e5d0e0d34a785e0 154 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 130 29.041 T 12-10-2018 IPR023006 Uncharacterised protein family UPF0225 YPK_2079 36fafdf9d1ab30541e5d0e0d34a785e0 154 SUPERFAMILY SSF103642 134 153 1.24E-6 T 12-10-2018 YPK_2079 36fafdf9d1ab30541e5d0e0d34a785e0 154 Pfam PF02810 SEC-C motif 3 19 2.9E-6 T 12-10-2018 IPR004027 SEC-C motif YPK_2079 36fafdf9d1ab30541e5d0e0d34a785e0 154 Pfam PF02810 SEC-C motif 136 154 4.8E-8 T 12-10-2018 IPR004027 SEC-C motif YPK_0344 950ea0865e292f8326022dd942de9186 71 Pfam PF02597 ThiS family 12 71 1.9E-12 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 YPK_0344 950ea0865e292f8326022dd942de9186 71 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 8 71 5.7E-21 T 12-10-2018 IPR010035 ThiS, thiamine-biosynthesis YPK_0344 950ea0865e292f8326022dd942de9186 71 Gene3D G3DSA:3.10.20.30 7 71 4.0E-18 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_0344 950ea0865e292f8326022dd942de9186 71 SUPERFAMILY SSF54285 7 71 1.6E-15 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 SMART SM00354 1 71 2.2E-27 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.3E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.3E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 Gene3D G3DSA:3.40.50.2300 61 303 6.3E-64 T 12-10-2018 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 12-10-2018 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 1.6E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 SUPERFAMILY SSF47413 1 59 2.32E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 Pfam PF13377 Periplasmic binding protein-like domain 169 321 2.0E-31 T 12-10-2018 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 Gene3D G3DSA:3.40.50.2300 160 287 6.3E-64 T 12-10-2018 YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 SUPERFAMILY SSF53822 61 324 2.14E-69 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0240 d64d2ccf6c585bf222f7ad716b380496 328 Gene3D G3DSA:1.10.260.40 1 58 1.6E-21 T 12-10-2018 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 Pfam PF00512 His Kinase A (phospho-acceptor) domain 398 462 9.2E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 Gene3D G3DSA:3.30.565.10 461 617 1.7E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3918 e4896e688f245e228d1af924c9e98db7 939 Gene3D G3DSA:1.10.287.130 360 460 2.0E-25 T 12-10-2018 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 SUPERFAMILY SSF47384 383 464 2.75E-19 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 SUPERFAMILY SSF47226 792 901 4.58E-9 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 594 1.5E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 PRINTS PR00344 Bacterial sensor protein C-terminal signature 563 573 1.5E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 613 1.5E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 559 1.5E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 SUPERFAMILY SSF52172 693 814 4.41E-33 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3918 e4896e688f245e228d1af924c9e98db7 939 SMART SM00448 694 809 1.8E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 Pfam PF01627 Hpt domain 848 914 4.7E-6 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 SMART SM00387 509 616 1.5E-35 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3918 e4896e688f245e228d1af924c9e98db7 939 SUPERFAMILY SSF55874 451 614 9.95E-47 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3918 e4896e688f245e228d1af924c9e98db7 939 SMART SM00388 397 462 1.0E-21 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 Gene3D G3DSA:1.20.120.160 832 919 9.9E-6 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 Pfam PF00072 Response regulator receiver domain 696 809 1.9E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3918 e4896e688f245e228d1af924c9e98db7 939 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 510 614 5.1E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3918 e4896e688f245e228d1af924c9e98db7 939 Gene3D G3DSA:3.40.50.2300 690 811 9.4E-34 T 12-10-2018 YPK_1832 0cce5cccc0d7cd5e9c00a089f678a52e 327 Pfam PF00535 Glycosyl transferase family 2 11 172 7.9E-32 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YPK_1832 0cce5cccc0d7cd5e9c00a089f678a52e 327 SUPERFAMILY SSF53448 8 244 7.03E-39 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1832 0cce5cccc0d7cd5e9c00a089f678a52e 327 Gene3D G3DSA:3.90.550.10 3 230 2.5E-39 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1832 0cce5cccc0d7cd5e9c00a089f678a52e 327 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 2 326 61.715 T 12-10-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 YPK_1920 7b044ad2d2377574f87c07ae70c5709e 64 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 18 64 8.0E-21 T 12-10-2018 YPK_1920 7b044ad2d2377574f87c07ae70c5709e 64 Pfam PF13617 YnbE-like lipoprotein 10 62 1.5E-25 T 12-10-2018 IPR025985 YnbE-like lipoprotein YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 Pfam PF13361 UvrD-like helicase C-terminal domain 517 808 4.6E-17 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 Gene3D G3DSA:1.10.3170.10 156 349 4.6E-163 T 12-10-2018 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 Gene3D G3DSA:3.40.50.300 9 436 4.6E-163 T 12-10-2018 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 9 1193 0.0 T 12-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 SUPERFAMILY SSF52980 903 1195 1.39E-89 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 SUPERFAMILY SSF52540 12 819 7.62E-107 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 436 2.3E-59 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 Gene3D G3DSA:3.40.50.300 445 846 8.9E-173 T 12-10-2018 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 Gene3D G3DSA:1.10.486.10 583 728 8.9E-173 T 12-10-2018 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 7 1194 23.095 T 12-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 YPK_1043 8f832f14dd212e68f224e3ae9f602fd5 1220 Gene3D G3DSA:3.90.320.10 892 1200 1.7E-111 T 12-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal YPK_4174 683ee476ce771582389b21abe9f5e643 205 Pfam PF03458 UPF0126 domain 5 79 4.8E-19 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 YPK_4174 683ee476ce771582389b21abe9f5e643 205 Pfam PF03458 UPF0126 domain 91 164 6.9E-21 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 117 196 5.8E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 Gene3D G3DSA:1.10.720.60 16 99 5.4E-70 T 12-10-2018 YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 SUPERFAMILY SSF56784 1 222 1.8E-57 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2 222 1.7E-87 T 12-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 Gene3D G3DSA:3.40.50.1000 5 206 5.4E-70 T 12-10-2018 IPR023214 HAD superfamily YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 114 127 2.1E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 191 204 2.1E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.1E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 164 184 2.1E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3320 649f11bd0620e0600e5c8b8bdfabed66 229 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 1 222 40.696 T 12-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Gene3D G3DSA:3.30.70.1430 49 811 4.8E-294 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Gene3D G3DSA:3.30.70.1320 144 335 4.8E-294 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 3.1E-81 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 SUPERFAMILY SSF82693 49 142 4.71E-23 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1037 34.895 T 12-10-2018 IPR022831 Multidrug resistance protein MdtB YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Gene3D G3DSA:3.30.70.1440 663 861 4.8E-294 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Gene3D G3DSA:1.20.1640.10 19 512 4.8E-294 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Pfam PF00873 AcrB/AcrD/AcrF family 13 1022 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Gene3D G3DSA:3.30.2090.10 188 278 4.8E-294 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Gene3D G3DSA:3.30.70.1430 567 662 4.8E-294 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 SUPERFAMILY SSF82693 146 333 1.1E-19 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 SUPERFAMILY SSF82866 299 498 3.14E-46 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 SUPERFAMILY SSF82693 565 662 1.92E-16 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Gene3D G3DSA:3.30.2090.10 715 803 4.8E-294 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 SUPERFAMILY SSF82866 799 1025 9.55E-47 T 12-10-2018 YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 SUPERFAMILY SSF82714 192 275 3.27E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 SUPERFAMILY SSF82714 719 802 6.54E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_1331 36c85a42831d349cab6839c88f6c7b12 1052 Gene3D G3DSA:1.20.1640.10 513 1019 4.8E-294 T 12-10-2018 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 SUPERFAMILY SSF51905 4 338 1.97E-32 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 1.2E-14 T 12-10-2018 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 1.2E-14 T 12-10-2018 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.2E-14 T 12-10-2018 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 1.2E-14 T 12-10-2018 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 2.5E-7 T 12-10-2018 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.5E-7 T 12-10-2018 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.5E-7 T 12-10-2018 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 338 4.7E-64 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_1702 067ae70798ac7b9c4cc7b6a9af5ad8c5 434 Gene3D G3DSA:3.50.50.100 2 409 5.1E-117 T 12-10-2018 YPK_1684 27fdad0d7df19c4cb19e0bbdc93faced 316 SUPERFAMILY SSF53901 4 316 1.55E-69 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1684 27fdad0d7df19c4cb19e0bbdc93faced 316 Gene3D G3DSA:3.40.47.10 1 170 3.5E-72 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1684 27fdad0d7df19c4cb19e0bbdc93faced 316 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 316 69.865 T 12-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YPK_1684 27fdad0d7df19c4cb19e0bbdc93faced 316 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 316 5.0E-145 T 12-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YPK_1684 27fdad0d7df19c4cb19e0bbdc93faced 316 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 5.8E-31 T 12-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YPK_1684 27fdad0d7df19c4cb19e0bbdc93faced 316 Gene3D G3DSA:3.40.47.10 171 316 2.6E-50 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1684 27fdad0d7df19c4cb19e0bbdc93faced 316 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 227 315 3.0E-35 T 12-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YPK_0527 1a419096c1a4c706086f70a326962ff3 171 PIRSF PIRSF005276 3 171 4.3E-63 T 12-10-2018 IPR007481 Stringent starvation protein B YPK_0527 1a419096c1a4c706086f70a326962ff3 171 SUPERFAMILY SSF101738 3 115 2.35E-48 T 12-10-2018 IPR036760 SspB-like superfamily YPK_0527 1a419096c1a4c706086f70a326962ff3 171 Gene3D G3DSA:2.30.30.220 3 129 1.8E-52 T 12-10-2018 IPR036760 SspB-like superfamily YPK_0527 1a419096c1a4c706086f70a326962ff3 171 Pfam PF04386 Stringent starvation protein B 9 171 3.6E-43 T 12-10-2018 IPR007481 Stringent starvation protein B YPK_3418 01df9ca865e9d6335eb3628712c0a408 224 SMART SM01120 43 216 1.1E-66 T 12-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YPK_3418 01df9ca865e9d6335eb3628712c0a408 224 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 22 215 3.2E-46 T 12-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 YPK_3418 01df9ca865e9d6335eb3628712c0a408 224 Gene3D G3DSA:1.25.40.340 15 220 2.3E-53 T 12-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YPK_3418 01df9ca865e9d6335eb3628712c0a408 224 Pfam PF02734 DAK2 domain 43 215 3.6E-51 T 12-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YPK_3418 01df9ca865e9d6335eb3628712c0a408 224 SUPERFAMILY SSF101473 21 217 2.88E-50 T 12-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YPK_2195 e937db36c25d512fc353da06b673f1f8 156 Gene3D G3DSA:2.60.120.10 26 155 3.7E-46 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_2195 e937db36c25d512fc353da06b673f1f8 156 Pfam PF07883 Cupin domain 66 132 2.5E-10 T 12-10-2018 IPR013096 Cupin 2, conserved barrel YPK_2195 e937db36c25d512fc353da06b673f1f8 156 SUPERFAMILY SSF51182 35 155 8.89E-30 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 660 64.593 T 12-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 Gene3D G3DSA:3.40.50.12230 1 304 8.0E-104 T 12-10-2018 YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 Pfam PF02911 Formyl transferase, C-terminal domain 203 278 4.0E-16 T 12-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 SUPERFAMILY SSF53328 1 202 1.28E-55 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 Pfam PF00551 Formyl transferase 25 173 4.1E-24 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 Gene3D G3DSA:3.40.50.720 314 659 2.7E-122 T 12-10-2018 YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 Pfam PF01370 NAD dependent epimerase/dehydratase family 318 566 4.7E-42 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 SUPERFAMILY SSF50486 205 304 2.04E-22 T 12-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 SUPERFAMILY SSF51735 317 651 2.78E-67 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1833 d328880be6f71eb77ff4f4ee7719fbab 667 PIRSF PIRSF036506 1 660 0.0 T 12-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 YPK_2362 fd92b23faed07bacc03e01965b9a32a2 392 TIGRFAM TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family 38 385 1.3E-153 T 12-10-2018 IPR019936 Mutatrotase, YjhT-like YPK_2362 fd92b23faed07bacc03e01965b9a32a2 392 Gene3D G3DSA:2.120.10.80 197 385 2.7E-6 T 12-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 YPK_2362 fd92b23faed07bacc03e01965b9a32a2 392 Gene3D G3DSA:2.120.10.80 23 184 1.4E-15 T 12-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 YPK_2362 fd92b23faed07bacc03e01965b9a32a2 392 Hamap MF_01195 N-acetylneuraminate epimerase [nanM]. 17 392 46.638 T 12-10-2018 IPR019936 Mutatrotase, YjhT-like YPK_2362 fd92b23faed07bacc03e01965b9a32a2 392 Pfam PF01344 Kelch motif 91 140 1.5E-9 T 12-10-2018 IPR006652 Kelch repeat type 1 GO:0005515 YPK_2362 fd92b23faed07bacc03e01965b9a32a2 392 SUPERFAMILY SSF117281 55 381 4.97E-30 T 12-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 YPK_0003 813609c5d77e5829695fca2abef2848f 361 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 361 99.109 T 12-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 YPK_0003 813609c5d77e5829695fca2abef2848f 361 SUPERFAMILY SSF52540 1 340 1.59E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0003 813609c5d77e5829695fca2abef2848f 361 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 342 8.2E-39 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal YPK_0003 813609c5d77e5829695fca2abef2848f 361 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 12-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 YPK_0003 813609c5d77e5829695fca2abef2848f 361 Gene3D G3DSA:3.40.50.300 8 331 1.7E-79 T 12-10-2018 YPK_0003 813609c5d77e5829695fca2abef2848f 361 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 2.7E-132 T 12-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 YPK_0003 813609c5d77e5829695fca2abef2848f 361 Gene3D G3DSA:1.20.1050.90 120 297 1.7E-79 T 12-10-2018 YPK_0003 813609c5d77e5829695fca2abef2848f 361 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 12-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 YPK_3763 1834649026af33c0268bc7cb1a058b3f 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 6.1E-22 T 12-10-2018 IPR010854 Domain of unknown function DUF1471 YPK_3763 1834649026af33c0268bc7cb1a058b3f 87 SUPERFAMILY SSF159871 4 87 1.7E-26 T 12-10-2018 IPR036275 YdgH-like superfamily YPK_3763 1834649026af33c0268bc7cb1a058b3f 87 Gene3D G3DSA:3.30.1660.10 21 87 9.3E-24 T 12-10-2018 IPR025543 Dodecin-like YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 12-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 Gene3D G3DSA:1.20.1440.90 272 388 7.5E-28 T 12-10-2018 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 SUPERFAMILY SSF51621 6 878 0.0 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 244 259 9.0E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 9.0E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 9.0E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 185 201 9.0E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 132 145 9.0E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 708 734 9.0E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 9.0E-69 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 Pfam PF00311 Phosphoenolpyruvate carboxylase 128 878 1.8E-289 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 133 144 - T 12-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_4091 7d53a9607e20d65cd05d8d46100188af 878 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 878 18.224 T 12-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 1.2E-22 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 4.4E-31 T 12-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 SUPERFAMILY SSF51621 249 549 1.94E-110 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 SUPERFAMILY SSF52009 125 246 8.24E-37 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 SUPERFAMILY SSF47831 23 143 1.96E-34 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PIRSF PIRSF000732 1 574 7.4E-219 T 12-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Gene3D G3DSA:3.50.30.10 4 233 1.1E-82 T 12-10-2018 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 4.5E-31 T 12-10-2018 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 4.5E-31 T 12-10-2018 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 4.5E-31 T 12-10-2018 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 4.5E-31 T 12-10-2018 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Gene3D G3DSA:1.10.274.10 21 146 1.1E-82 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Gene3D G3DSA:3.20.20.60 234 575 4.5E-128 T 12-10-2018 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 565 1.5E-260 T 12-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 YPK_1427 91c8efd0fa36d662f0d977bcb0ecf9b1 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 251 541 9.4E-126 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 YPK_1055 891854477ecffdb5265be2d017718d00 251 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 159 1.0E-31 T 12-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 YPK_1055 891854477ecffdb5265be2d017718d00 251 Gene3D G3DSA:1.10.150.20 162 251 4.4E-27 T 12-10-2018 YPK_1055 891854477ecffdb5265be2d017718d00 251 SUPERFAMILY SSF88723 4 159 7.36E-41 T 12-10-2018 IPR029060 PIN-like domain superfamily YPK_1055 891854477ecffdb5265be2d017718d00 251 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 160 250 8.5E-24 T 12-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 YPK_1055 891854477ecffdb5265be2d017718d00 251 SMART SM00475 3 250 2.4E-92 T 12-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 YPK_1055 891854477ecffdb5265be2d017718d00 251 SUPERFAMILY SSF47807 160 241 4.64E-21 T 12-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily YPK_1055 891854477ecffdb5265be2d017718d00 251 Gene3D G3DSA:3.40.50.1010 1 161 2.1E-59 T 12-10-2018 YPK_1055 891854477ecffdb5265be2d017718d00 251 SMART SM00279 162 197 2.1E-9 T 12-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 YPK_1055 891854477ecffdb5265be2d017718d00 251 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 251 44.106 T 12-10-2018 IPR022895 Flap endonuclease Xni GO:0048256 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 Gene3D G3DSA:3.40.50.300 555 766 4.5E-61 T 12-10-2018 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 313 325 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 SMART SM00382 603 751 2.5E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 SMART SM00382 217 362 1.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 842 1.9E-8 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 Pfam PF07724 AAA domain (Cdc48 subfamily) 602 763 1.6E-37 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 681 699 3.2E-29 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 652 670 3.2E-29 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 714 728 3.2E-29 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 607 625 3.2E-29 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 853 0.0 T 12-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 SUPERFAMILY SSF81923 12 126 1.02E-9 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 SUPERFAMILY SSF52540 180 551 5.89E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 Gene3D G3DSA:3.40.50.300 363 550 5.3E-43 T 12-10-2018 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 222 334 5.2E-8 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 637 655 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 Gene3D G3DSA:1.10.8.60 769 865 1.4E-6 T 12-10-2018 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 SUPERFAMILY SSF52540 552 834 1.05E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 Gene3D G3DSA:3.40.50.300 171 361 6.9E-60 T 12-10-2018 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 Gene3D G3DSA:1.10.1780.10 5 160 5.4E-34 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_0395 fda22f5a86b700ad0a737a6a7d2b40c1 867 SMART SM01086 769 859 2.4E-4 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_0837 02b4681338df9716f8e1264198c9afeb 187 SUPERFAMILY SSF143456 1 187 1.7E-64 T 12-10-2018 YPK_0837 02b4681338df9716f8e1264198c9afeb 187 Gene3D G3DSA:3.40.1740.10 1 187 4.7E-63 T 12-10-2018 YPK_0837 02b4681338df9716f8e1264198c9afeb 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.134 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 YPK_0837 02b4681338df9716f8e1264198c9afeb 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 2.0E-47 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 YPK_0435 b5532775c0068183802ff244d35ff0b1 545 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 5 537 2.5E-209 T 12-10-2018 IPR006003 FGGY carbohydrate kinase, pentulose kinase GO:0005975|GO:0016773 YPK_0435 b5532775c0068183802ff244d35ff0b1 545 PIRSF PIRSF000538 2 542 9.9E-77 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_0435 b5532775c0068183802ff244d35ff0b1 545 SUPERFAMILY SSF53067 4 263 2.95E-60 T 12-10-2018 YPK_0435 b5532775c0068183802ff244d35ff0b1 545 Gene3D G3DSA:3.30.420.40 5 513 1.1E-227 T 12-10-2018 YPK_0435 b5532775c0068183802ff244d35ff0b1 545 SUPERFAMILY SSF53067 280 532 4.53E-56 T 12-10-2018 YPK_0435 b5532775c0068183802ff244d35ff0b1 545 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 282 489 2.7E-40 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_0435 b5532775c0068183802ff244d35ff0b1 545 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 262 1.7E-30 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_0435 b5532775c0068183802ff244d35ff0b1 545 Gene3D G3DSA:3.30.420.460 323 525 1.1E-227 T 12-10-2018 YPK_3302 043eaf2f0ecbf755feb087b9261c125a 209 PIRSF PIRSF006102 3 209 1.8E-70 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_3302 043eaf2f0ecbf755feb087b9261c125a 209 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 1.0E-62 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_3302 043eaf2f0ecbf755feb087b9261c125a 209 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 206 1.2E-104 T 12-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 YPK_3302 043eaf2f0ecbf755feb087b9261c125a 209 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.87 T 12-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 SUPERFAMILY SSF88659 122 183 1.63E-18 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 1.4E-99 T 12-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 Gene3D G3DSA:1.10.1740.10 1 120 1.5E-46 T 12-10-2018 YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 12-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 Pfam PF04542 Sigma-70 region 2 25 91 1.2E-16 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 Gene3D G3DSA:1.10.10.10 121 191 1.5E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 Pfam PF08281 Sigma-70, region 4 129 180 7.5E-19 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 183 1.1E-30 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YPK_1182 5f1094738f6cca4777a1a31598f0e882 191 SUPERFAMILY SSF88946 2 103 6.75E-30 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Gene3D G3DSA:1.10.10.10 1 84 1.2E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 SUPERFAMILY SSF46785 1 110 5.14E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Pfam PF03466 LysR substrate binding domain 88 293 2.9E-51 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Gene3D G3DSA:3.40.190.10 164 267 1.2E-75 T 12-10-2018 YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 SUPERFAMILY SSF53850 89 297 2.33E-45 T 12-10-2018 YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 6.0E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4079 9dcfcf1a3706e467c0fc06fdaeb72a93 305 Gene3D G3DSA:3.40.190.10 91 280 1.2E-75 T 12-10-2018 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Gene3D G3DSA:1.10.150.20 562 617 2.1E-23 T 12-10-2018 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Pfam PF14520 Helix-hairpin-helix domain 565 616 1.1E-7 T 12-10-2018 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Gene3D G3DSA:3.30.420.340 384 559 1.9E-46 T 12-10-2018 IPR038476 UvrC homology region 2 superfamily YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 15 596 1.4E-227 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 SUPERFAMILY SSF47781 528 616 1.05E-17 T 12-10-2018 IPR010994 RuvA domain 2-like YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 392 549 9.6E-46 T 12-10-2018 IPR001162 UvrC family homology region YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Pfam PF01541 GIY-YIG catalytic domain 25 100 1.8E-12 T 12-10-2018 IPR000305 GIY-YIG endonuclease YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Gene3D G3DSA:4.10.860.10 195 248 2.4E-5 T 12-10-2018 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 SMART SM00278 563 582 34.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 SMART SM00278 595 614 0.12 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Gene3D G3DSA:3.40.1440.10 12 109 7.4E-32 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 SUPERFAMILY SSF46600 198 250 4.18E-13 T 12-10-2018 IPR036876 UVR domain superfamily YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 SMART SM00465 24 105 1.0E-22 T 12-10-2018 IPR000305 GIY-YIG endonuclease YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 SUPERFAMILY SSF82771 24 107 1.1E-24 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Hamap MF_00203 UvrABC system protein C [uvrC]. 11 614 30.078 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 YPK_2355 c26ed003e7c697eac8c476b36cfc6ab1 617 Pfam PF02151 UvrB/uvrC motif 212 244 2.1E-9 T 12-10-2018 IPR001943 UVR domain GO:0005515 YPK_2850 931fc4065e182ec1929e0a8980ba1c14 85 Gene3D G3DSA:3.10.20.30 1 85 7.5E-19 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_2850 931fc4065e182ec1929e0a8980ba1c14 85 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YPK_2850 931fc4065e182ec1929e0a8980ba1c14 85 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 77 1.1E-9 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YPK_2850 931fc4065e182ec1929e0a8980ba1c14 85 SUPERFAMILY SSF54292 4 85 2.36E-20 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_2930 c7a92ba4c3f4707212936ba7c9b43323 383 Gene3D G3DSA:3.40.640.10 57 284 7.4E-133 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2930 c7a92ba4c3f4707212936ba7c9b43323 383 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 YPK_2930 c7a92ba4c3f4707212936ba7c9b43323 383 Pfam PF00155 Aminotransferase class I and II 40 378 1.3E-60 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_2930 c7a92ba4c3f4707212936ba7c9b43323 383 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 378 4.6E-140 T 12-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 YPK_2930 c7a92ba4c3f4707212936ba7c9b43323 383 Gene3D G3DSA:3.90.1150.10 40 376 7.4E-133 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2930 c7a92ba4c3f4707212936ba7c9b43323 383 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 382 48.999 T 12-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 YPK_2930 c7a92ba4c3f4707212936ba7c9b43323 383 SUPERFAMILY SSF53383 3 378 9.82E-105 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1416 701032e387458dee0b37fc53d1b72170 472 Gene3D G3DSA:3.40.50.410 98 274 2.4E-34 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_1416 701032e387458dee0b37fc53d1b72170 472 Pfam PF00092 von Willebrand factor type A domain 97 266 9.2E-23 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_1416 701032e387458dee0b37fc53d1b72170 472 SMART SM00327 95 274 7.5E-26 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_1416 701032e387458dee0b37fc53d1b72170 472 SUPERFAMILY SSF53300 93 269 3.62E-35 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 SUPERFAMILY SSF50494 3 303 2.65E-64 T 12-10-2018 IPR009003 Peptidase S1, PA clan YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 Gene3D G3DSA:2.40.10.120 38 288 2.2E-83 T 12-10-2018 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 Pfam PF13365 Trypsin-like peptidase domain 119 255 2.5E-32 T 12-10-2018 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 400 470 3.9E-12 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 Gene3D G3DSA:2.30.42.10 392 481 9.1E-29 T 12-10-2018 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 PRINTS PR00834 HtrA/DegQ protease family signature 150 170 5.0E-60 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 PRINTS PR00834 HtrA/DegQ protease family signature 129 141 5.0E-60 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 PRINTS PR00834 HtrA/DegQ protease family signature 248 265 5.0E-60 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 PRINTS PR00834 HtrA/DegQ protease family signature 191 215 5.0E-60 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 PRINTS PR00834 HtrA/DegQ protease family signature 226 243 5.0E-60 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 PRINTS PR00834 HtrA/DegQ protease family signature 334 346 5.0E-60 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 SMART SM00228 401 473 5.1E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 SMART SM00228 294 376 5.5E-12 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 Gene3D G3DSA:2.30.42.10 292 391 1.5E-26 T 12-10-2018 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 SUPERFAMILY SSF50156 276 384 1.73E-21 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 Pfam PF13180 PDZ domain 296 385 9.0E-14 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 40 479 1.3E-163 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 YPK_3452 9dd675d2c3c0508c9c68c29fada773a0 481 SUPERFAMILY SSF50156 412 477 3.81E-15 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 Gene3D G3DSA:3.30.70.1660 282 360 3.8E-15 T 12-10-2018 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 Gene3D G3DSA:3.30.70.1660 107 221 4.2E-46 T 12-10-2018 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.904 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 SUPERFAMILY SSF75620 12 353 4.97E-135 T 12-10-2018 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 Pfam PF03462 PCRF domain 12 203 2.6E-74 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 Gene3D G3DSA:3.30.160.20 222 281 4.0E-35 T 12-10-2018 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 SMART SM00937 63 178 5.6E-70 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 5.3E-172 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 YPK_2179 af3a46b32065ced1e54240d0d83835c0 360 Pfam PF00472 RF-1 domain 216 321 2.2E-40 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YPK_0020 872c579a718bab2a3d98d4b9c27a78e4 151 Gene3D G3DSA:3.40.630.30 1 147 2.6E-33 T 12-10-2018 YPK_0020 872c579a718bab2a3d98d4b9c27a78e4 151 SUPERFAMILY SSF55729 1 134 2.79E-24 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_0020 872c579a718bab2a3d98d4b9c27a78e4 151 Pfam PF13673 Acetyltransferase (GNAT) domain 58 133 3.8E-15 T 12-10-2018 IPR000182 GNAT domain YPK_1193 e38275486819938d23347e15bd44e79c 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 2.1E-53 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 YPK_1193 e38275486819938d23347e15bd44e79c 126 SUPERFAMILY SSF56214 3 125 1.7E-30 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YPK_1193 e38275486819938d23347e15bd44e79c 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.562 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 YPK_1193 e38275486819938d23347e15bd44e79c 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 93 2.0E-44 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 YPK_1193 e38275486819938d23347e15bd44e79c 126 Gene3D G3DSA:3.90.470.20 1 126 6.6E-40 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YPK_1193 e38275486819938d23347e15bd44e79c 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 122 6.4E-27 T 12-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 YPK_1193 e38275486819938d23347e15bd44e79c 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 126 2.3E-37 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 YPK_0072 f089a25f1063ddebb211e88bea83b47b 414 Pfam PF13535 ATP-grasp domain 144 285 1.1E-13 T 12-10-2018 YPK_0072 f089a25f1063ddebb211e88bea83b47b 414 SUPERFAMILY SSF56059 107 308 1.33E-27 T 12-10-2018 YPK_0072 f089a25f1063ddebb211e88bea83b47b 414 Gene3D G3DSA:3.30.470.20 99 407 1.0E-52 T 12-10-2018 YPK_1786 25577b859e0d301ee151381f1edde0fc 180 Pfam PF16970 Type-1 fimbrial protein, A 55 180 2.7E-16 T 12-10-2018 IPR039458 Type-1 fimbrial protein, A YPK_1786 25577b859e0d301ee151381f1edde0fc 180 SUPERFAMILY SSF49401 28 180 6.46E-26 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_1786 25577b859e0d301ee151381f1edde0fc 180 Gene3D G3DSA:2.60.40.1090 28 179 1.7E-32 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_3950 c9919d09adb9b297aac7f2dcc329c28b 253 Pfam PF01048 Phosphorylase superfamily 21 241 1.4E-38 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YPK_3950 c9919d09adb9b297aac7f2dcc329c28b 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 6 253 6.7E-128 T 12-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 YPK_3950 c9919d09adb9b297aac7f2dcc329c28b 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 66 81 - T 12-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_3950 c9919d09adb9b297aac7f2dcc329c28b 253 Gene3D G3DSA:3.40.50.1580 1 253 5.3E-81 T 12-10-2018 YPK_3950 c9919d09adb9b297aac7f2dcc329c28b 253 SUPERFAMILY SSF53167 6 250 1.44E-73 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YPK_3757 f8b2654b453bfc8156e546f6a043ecf7 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.14 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3757 f8b2654b453bfc8156e546f6a043ecf7 103 SUPERFAMILY SSF141091 1 102 3.4E-38 T 12-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3757 f8b2654b453bfc8156e546f6a043ecf7 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 2.0E-44 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3757 f8b2654b453bfc8156e546f6a043ecf7 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.7E-39 T 12-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3757 f8b2654b453bfc8156e546f6a043ecf7 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 12-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4028 72435b073b8ffb72b77dc39139c32e8b 310 Gene3D G3DSA:3.90.550.10 16 310 9.5E-87 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4028 72435b073b8ffb72b77dc39139c32e8b 310 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 19 303 3.9E-159 T 12-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 YPK_4028 72435b073b8ffb72b77dc39139c32e8b 310 Pfam PF00483 Nucleotidyl transferase 19 255 9.3E-71 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YPK_4028 72435b073b8ffb72b77dc39139c32e8b 310 SUPERFAMILY SSF53448 18 303 2.23E-92 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1862 90362defb78a9eafd61b12087e2f7016 341 Gene3D G3DSA:3.40.50.2300 69 323 1.8E-101 T 12-10-2018 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 Gene3D G3DSA:1.10.260.40 3 59 4.2E-25 T 12-10-2018 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 SUPERFAMILY SSF47413 1 59 2.25E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 12-10-2018 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 Gene3D G3DSA:3.40.50.2300 162 324 1.8E-101 T 12-10-2018 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 SMART SM00354 1 71 2.0E-36 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 Pfam PF13377 Periplasmic binding protein-like domain 171 331 9.5E-42 T 12-10-2018 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 63.616 T 12-10-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.8E-18 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.6E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.6E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1862 90362defb78a9eafd61b12087e2f7016 341 SUPERFAMILY SSF53822 60 340 1.02E-95 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 Gene3D G3DSA:1.10.287.400 377 440 2.6E-33 T 12-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 419 2.9E-166 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 452 74.134 T 12-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 SUPERFAMILY SSF52402 3 186 7.68E-35 T 12-10-2018 YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 SUPERFAMILY SSF69864 190 442 8.63E-81 T 12-10-2018 YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 Pfam PF00764 Arginosuccinate synthase 16 409 2.0E-58 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 Gene3D G3DSA:3.40.50.620 14 191 1.1E-119 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 Gene3D G3DSA:3.90.1260.10 74 367 1.1E-119 T 12-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YPK_2505 c4f97b23a6c00bde0c8ada663bc2cc16 455 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YPK_3149 d21139e45e672301fde921d99ec294c7 402 Pfam PF13356 Arm DNA-binding domain 3 86 3.3E-19 T 12-10-2018 IPR025166 Integrase, DNA-binding domain YPK_3149 d21139e45e672301fde921d99ec294c7 402 Gene3D G3DSA:1.10.150.130 88 206 2.0E-32 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_3149 d21139e45e672301fde921d99ec294c7 402 Gene3D G3DSA:1.10.443.10 207 382 3.7E-21 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_3149 d21139e45e672301fde921d99ec294c7 402 Gene3D G3DSA:3.30.160.390 1 87 2.2E-36 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YPK_3149 d21139e45e672301fde921d99ec294c7 402 SUPERFAMILY SSF56349 98 380 5.0E-67 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_3149 d21139e45e672301fde921d99ec294c7 402 Pfam PF00589 Phage integrase family 207 370 5.5E-27 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_3874 d49dbae8a1f10413a5479bf4a33fe209 345 Pfam PF03741 Integral membrane protein TerC family 73 299 2.4E-42 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 YPK_3874 d49dbae8a1f10413a5479bf4a33fe209 345 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 10 337 4.4E-105 T 12-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 YPK_0354 be09dc7492f443309dfbef4f621ad7b5 91 Gene3D G3DSA:4.10.520.10 1 90 6.7E-37 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_0354 be09dc7492f443309dfbef4f621ad7b5 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 2.3E-32 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_0354 be09dc7492f443309dfbef4f621ad7b5 91 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 YPK_0354 be09dc7492f443309dfbef4f621ad7b5 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.6E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_0354 be09dc7492f443309dfbef4f621ad7b5 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.6E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_0354 be09dc7492f443309dfbef4f621ad7b5 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.6E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_0354 be09dc7492f443309dfbef4f621ad7b5 91 SMART SM00411 1 90 6.3E-44 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_0354 be09dc7492f443309dfbef4f621ad7b5 91 SUPERFAMILY SSF47729 1 90 1.15E-32 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_2258 64760a0ab26dc15767454cdde1024c2c 199 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 2 199 28.713 T 12-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 YPK_2258 64760a0ab26dc15767454cdde1024c2c 199 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 197 7.1E-52 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_2258 64760a0ab26dc15767454cdde1024c2c 199 PIRSF PIRSF006102 1 199 5.3E-56 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_2258 64760a0ab26dc15767454cdde1024c2c 199 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 3 198 2.3E-102 T 12-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 YPK_4201 7e3e9e7417743c60b8074ddafb450bd9 402 Pfam PF00872 Transposase, Mutator family 12 377 1.9E-114 T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_4201 7e3e9e7417743c60b8074ddafb450bd9 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_3068 7e3e9e7417743c60b8074ddafb450bd9 402 Pfam PF00872 Transposase, Mutator family 12 377 1.9E-114 T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_3068 7e3e9e7417743c60b8074ddafb450bd9 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_1806 7e3e9e7417743c60b8074ddafb450bd9 402 Pfam PF00872 Transposase, Mutator family 12 377 1.9E-114 T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_1806 7e3e9e7417743c60b8074ddafb450bd9 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_0823 137c642fde6d6cd5a8c96da3d239c2a4 308 Gene3D G3DSA:3.40.710.10 4 308 1.2E-111 T 12-10-2018 YPK_0823 137c642fde6d6cd5a8c96da3d239c2a4 308 TIGRFAM TIGR03814 Gln_ase: glutaminase A 10 308 9.1E-134 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YPK_0823 137c642fde6d6cd5a8c96da3d239c2a4 308 SUPERFAMILY SSF56601 8 308 2.89E-116 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_0823 137c642fde6d6cd5a8c96da3d239c2a4 308 Pfam PF04960 Glutaminase 24 308 5.8E-115 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YPK_0823 137c642fde6d6cd5a8c96da3d239c2a4 308 Hamap MF_00313 Glutaminase [glsA]. 6 308 47.144 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YPK_2028 b98a7320123d0cbd989c531f2837260f 253 SUPERFAMILY SSF48317 11 237 3.14E-32 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPK_2028 b98a7320123d0cbd989c531f2837260f 253 Pfam PF01569 PAP2 superfamily 80 228 5.0E-28 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2028 b98a7320123d0cbd989c531f2837260f 253 SMART SM00014 77 227 6.3E-36 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2028 b98a7320123d0cbd989c531f2837260f 253 Gene3D G3DSA:1.20.144.10 2 253 2.0E-77 T 12-10-2018 YPK_2119 a356500d720e38d12d3ddf2c700a19f5 361 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 63 360 1.4E-122 T 12-10-2018 IPR011970 Lytic murein transglycosylase YPK_2119 a356500d720e38d12d3ddf2c700a19f5 361 Pfam PF13406 Transglycosylase SLT domain 64 357 1.2E-105 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 YPK_2119 a356500d720e38d12d3ddf2c700a19f5 361 SUPERFAMILY SSF53955 53 359 4.08E-96 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_2119 a356500d720e38d12d3ddf2c700a19f5 361 Gene3D G3DSA:1.10.530.10 106 356 1.1E-86 T 12-10-2018 YPK_2119 a356500d720e38d12d3ddf2c700a19f5 361 Gene3D G3DSA:1.10.8.350 74 239 1.1E-86 T 12-10-2018 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 Pfam PF00679 Elongation factor G C-terminus 397 476 3.6E-21 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 9.6E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 9.6E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 9.6E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 9.6E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 9.6E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:3.40.50.300 1 198 1.1E-69 T 12-10-2018 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:2.40.30.10 199 299 4.8E-35 T 12-10-2018 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 SUPERFAMILY SSF54980 398 512 3.26E-26 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 SUPERFAMILY SSF50447 151 299 1.04E-33 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 SUPERFAMILY SSF52540 3 219 2.43E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 2.5E-10 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 1.1E-57 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:2.40.50.250 483 599 2.5E-126 T 12-10-2018 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:3.30.70.870 306 590 2.5E-126 T 12-10-2018 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 SUPERFAMILY SSF54980 302 387 1.58E-15 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 6.2E-289 T 12-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 Gene3D G3DSA:3.30.70.240 389 482 2.5E-126 T 12-10-2018 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 7.5E-26 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_4188 bcbaa36752e151277c84ace93c0113ce 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site YPK_1538 e1e1ff5e951ae8c97cc1a0a94d4a1eaf 260 SUPERFAMILY SSF53850 26 257 1.94E-63 T 12-10-2018 YPK_1538 e1e1ff5e951ae8c97cc1a0a94d4a1eaf 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site YPK_1538 e1e1ff5e951ae8c97cc1a0a94d4a1eaf 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 9.4E-62 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_1538 e1e1ff5e951ae8c97cc1a0a94d4a1eaf 260 Gene3D G3DSA:3.40.190.10 29 252 2.6E-85 T 12-10-2018 YPK_1538 e1e1ff5e951ae8c97cc1a0a94d4a1eaf 260 SMART SM00062 27 256 1.6E-71 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_1538 e1e1ff5e951ae8c97cc1a0a94d4a1eaf 260 Gene3D G3DSA:3.40.190.10 113 213 2.6E-85 T 12-10-2018 YPK_1538 e1e1ff5e951ae8c97cc1a0a94d4a1eaf 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 8 253 1.2E-91 T 12-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 YPK_1356 0a0ddcbe162272716e97a7399cfcc82d 524 Gene3D G3DSA:3.30.2010.10 109 187 1.2E-6 T 12-10-2018 YPK_1356 0a0ddcbe162272716e97a7399cfcc82d 524 SUPERFAMILY SSF48452 345 470 1.31E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1356 0a0ddcbe162272716e97a7399cfcc82d 524 Pfam PF07720 Tetratricopeptide repeat 352 369 0.024 T 12-10-2018 IPR011716 Tetratricopeptide TPR-3 YPK_1356 0a0ddcbe162272716e97a7399cfcc82d 524 Pfam PF01435 Peptidase family M48 108 295 1.3E-27 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 YPK_1356 0a0ddcbe162272716e97a7399cfcc82d 524 Gene3D G3DSA:1.25.40.10 227 521 2.7E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1356 0a0ddcbe162272716e97a7399cfcc82d 524 Pfam PF14559 Tetratricopeptide repeat 390 455 3.8E-9 T 12-10-2018 YPK_1356 0a0ddcbe162272716e97a7399cfcc82d 524 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 34 521 40.694 T 12-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 YPK_3882 bba2e1de3c94820289e54558d7d54589 319 PIRSF PIRSF015582 1 310 4.2E-66 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like YPK_3882 bba2e1de3c94820289e54558d7d54589 319 SUPERFAMILY SSF51621 8 250 4.08E-29 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_3882 bba2e1de3c94820289e54558d7d54589 319 Pfam PF15617 C-C_Bond_Lyase of the TIM-Barrel fold 6 300 6.1E-107 T 12-10-2018 IPR039480 C-C bond lyase-like YPK_3882 bba2e1de3c94820289e54558d7d54589 319 Gene3D G3DSA:3.20.20.60 3 300 4.7E-18 T 12-10-2018 YPK_1888 26fc107a0fedc0f5116b765514bcf27b 271 SMART SM00382 39 228 2.6E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1888 26fc107a0fedc0f5116b765514bcf27b 271 SUPERFAMILY SSF52540 5 249 9.82E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1888 26fc107a0fedc0f5116b765514bcf27b 271 Pfam PF00005 ABC transporter 31 178 3.7E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1888 26fc107a0fedc0f5116b765514bcf27b 271 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1888 26fc107a0fedc0f5116b765514bcf27b 271 Gene3D G3DSA:3.40.50.300 3 268 3.9E-74 T 12-10-2018 YPK_3784 0a784ffdf5113f66e902cce07d92495a 130 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 12-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 YPK_3784 0a784ffdf5113f66e902cce07d92495a 130 SUPERFAMILY SSF54995 1 103 1.83E-37 T 12-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3784 0a784ffdf5113f66e902cce07d92495a 130 Gene3D G3DSA:3.30.70.60 1 92 8.1E-33 T 12-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YPK_3784 0a784ffdf5113f66e902cce07d92495a 130 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 1.0E-37 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3784 0a784ffdf5113f66e902cce07d92495a 130 Pfam PF01250 Ribosomal protein S6 3 91 9.4E-28 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3784 0a784ffdf5113f66e902cce07d92495a 130 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.959 T 12-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 Pfam PF08402 TOBE domain 280 356 1.1E-15 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 SUPERFAMILY SSF50331 238 355 4.02E-13 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 Pfam PF00005 ABC transporter 21 163 8.7E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 Gene3D G3DSA:2.40.50.140 287 348 4.2E-10 T 12-10-2018 YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 SMART SM00382 30 212 1.3E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 Gene3D G3DSA:3.40.50.300 4 223 3.8E-66 T 12-10-2018 YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 SUPERFAMILY SSF52540 5 242 2.59E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 36 353 4.4E-110 T 12-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 YPK_1333 d4488b1a08ec77aa91eb36c9d4a2d610 361 Gene3D G3DSA:2.40.50.940 224 351 4.2E-10 T 12-10-2018 YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 SUPERFAMILY SSF103025 19 243 3.14E-65 T 12-10-2018 YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 Gene3D G3DSA:3.30.70.1630 25 195 7.4E-60 T 12-10-2018 YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 Pfam PF01571 Aminomethyltransferase folate-binding domain 32 181 1.1E-7 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 Gene3D G3DSA:2.40.30.160 198 319 1.5E-44 T 12-10-2018 YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 Gene3D G3DSA:3.30.70.1400 28 114 7.4E-60 T 12-10-2018 YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 SUPERFAMILY SSF101790 245 326 2.68E-26 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 PIRSF PIRSF006487 21 293 2.0E-10 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 188 253 2.2E-26 T 12-10-2018 IPR017703 YgfZ/GcvT conserved site YPK_0875 ab53097c5e6ce2c43d34b3b4e442edb8 330 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 323 50.893 T 12-10-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.1E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.1E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.1E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 248 2.3E-56 T 12-10-2018 YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 Gene3D G3DSA:3.40.50.720 1 251 1.5E-79 T 12-10-2018 YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 SUPERFAMILY SSF51735 3 250 4.74E-76 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0987 cfebeaa8852f0de1b16a578e7ad63aaa 251 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 4 251 9.6E-133 T 12-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.984 T 12-10-2018 IPR026593 Protein translocase subunit SecY YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Pfam PF00344 SecY translocase 76 417 1.3E-119 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 1.3E-98 T 12-10-2018 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PIRSF PIRSF004557 11 441 1.6E-123 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Gene3D G3DSA:1.10.3370.10 13 429 1.9E-164 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 2.9E-141 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0303 c9ddd3ae7a6ecd2a11613e657fea94a3 443 SUPERFAMILY SSF103491 16 424 6.28E-134 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 SUPERFAMILY SSF49785 21 231 1.79E-82 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily YPK_0997 8cac311e478ca12f1312e308d7476323 1024 Gene3D G3DSA:1.50.10.100 233 621 2.8E-109 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 SUPERFAMILY SSF49863 902 1023 4.32E-41 T 12-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 Pfam PF09093 Lyase, catalytic 244 606 9.1E-134 T 12-10-2018 IPR015177 Lyase, catalytic YPK_0997 8cac311e478ca12f1312e308d7476323 1024 Gene3D G3DSA:2.60.220.10 902 1024 7.4E-38 T 12-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 903 964 7.5E-5 T 12-10-2018 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 Gene3D G3DSA:2.70.98.10 622 900 1.3E-98 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 SUPERFAMILY SSF74650 622 896 1.26E-84 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 PIRSF PIRSF034515 1 1024 0.0 T 12-10-2018 IPR024200 Chondroitin sulfate ABC endolyase GO:0005975|GO:0034000 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 SUPERFAMILY SSF48230 234 620 6.11E-154 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 628 880 5.6E-33 T 12-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 Gene3D G3DSA:2.60.120.430 20 232 3.9E-64 T 12-10-2018 YPK_0997 8cac311e478ca12f1312e308d7476323 1024 Pfam PF09092 Lyase, N terminal 34 229 1.8E-59 T 12-10-2018 IPR015176 Lyase, N-terminal YPK_3573 6a208bce41b6e3569c3198205c2ec429 272 SUPERFAMILY SSF53335 17 265 4.78E-78 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3573 6a208bce41b6e3569c3198205c2ec429 272 Gene3D G3DSA:3.40.50.150 1 200 1.1E-67 T 12-10-2018 YPK_3573 6a208bce41b6e3569c3198205c2ec429 272 Gene3D G3DSA:1.10.8.100 201 268 1.8E-28 T 12-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 YPK_3573 6a208bce41b6e3569c3198205c2ec429 272 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 12-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 YPK_3573 6a208bce41b6e3569c3198205c2ec429 272 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 56.043 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 YPK_3573 6a208bce41b6e3569c3198205c2ec429 272 Pfam PF00398 Ribosomal RNA adenine dimethylase 11 264 2.4E-79 T 12-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YPK_3573 6a208bce41b6e3569c3198205c2ec429 272 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 7.1E-89 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 YPK_3573 6a208bce41b6e3569c3198205c2ec429 272 SMART SM00650 25 198 8.4E-83 T 12-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 YPK_0854 7705f87e858e6fd6719440b4949e429f 289 SUPERFAMILY SSF50182 114 179 7.52E-17 T 12-10-2018 IPR010920 LSM domain superfamily YPK_0854 7705f87e858e6fd6719440b4949e429f 289 Gene3D G3DSA:3.30.70.100 179 273 9.3E-23 T 12-10-2018 YPK_0854 7705f87e858e6fd6719440b4949e429f 289 Pfam PF05552 Conserved TM helix 15 64 5.3E-14 T 12-10-2018 IPR008910 Conserved TM helix YPK_0854 7705f87e858e6fd6719440b4949e429f 289 Pfam PF00924 Mechanosensitive ion channel 72 268 2.1E-53 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 YPK_0854 7705f87e858e6fd6719440b4949e429f 289 SUPERFAMILY SSF82689 181 279 9.55E-29 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 YPK_0854 7705f87e858e6fd6719440b4949e429f 289 SUPERFAMILY SSF82861 28 112 2.22E-16 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 YPK_0854 7705f87e858e6fd6719440b4949e429f 289 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 12-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 YPK_0854 7705f87e858e6fd6719440b4949e429f 289 Gene3D G3DSA:2.30.30.60 129 177 8.1E-21 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPK_1859 c3293d1fbfa2c49b24aa02f189d494d5 400 SUPERFAMILY SSF103473 7 392 1.83E-59 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1859 c3293d1fbfa2c49b24aa02f189d494d5 400 Pfam PF07690 Major Facilitator Superfamily 14 344 5.4E-41 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_1859 c3293d1fbfa2c49b24aa02f189d494d5 400 Gene3D G3DSA:1.20.1720.10 7 381 1.8E-82 T 12-10-2018 YPK_1859 c3293d1fbfa2c49b24aa02f189d494d5 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 383 4.7E-110 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 YPK_1475 8ec0494dc307f81b22ec2dce4bffe9be 181 SUPERFAMILY SSF49401 27 181 4.23E-24 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_1475 8ec0494dc307f81b22ec2dce4bffe9be 181 Gene3D G3DSA:2.60.40.1090 24 181 4.3E-27 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_1475 8ec0494dc307f81b22ec2dce4bffe9be 181 Pfam PF16970 Type-1 fimbrial protein, A 52 181 2.2E-12 T 12-10-2018 IPR039458 Type-1 fimbrial protein, A YPK_2029 220f3d21da8d782c43e67a936e8480aa 200 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 9 198 2.3E-92 T 12-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YPK_2029 220f3d21da8d782c43e67a936e8480aa 200 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 5 200 47.897 T 12-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YPK_2029 220f3d21da8d782c43e67a936e8480aa 200 SUPERFAMILY SSF142695 7 177 3.92E-65 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YPK_2029 220f3d21da8d782c43e67a936e8480aa 200 Gene3D G3DSA:3.40.50.10990 5 178 1.6E-75 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YPK_2029 220f3d21da8d782c43e67a936e8480aa 200 Pfam PF00925 GTP cyclohydrolase II 9 174 8.1E-66 T 12-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 YPK_2123 b57e73dea97e6a7c2f3b8b21224ce6df 89 Gene3D G3DSA:3.30.1070.10 31 87 5.9E-28 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 YPK_2123 b57e73dea97e6a7c2f3b8b21224ce6df 89 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 2.9E-24 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 YPK_2123 b57e73dea97e6a7c2f3b8b21224ce6df 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 3.0E-33 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 YPK_2123 b57e73dea97e6a7c2f3b8b21224ce6df 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 18.604 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 YPK_2123 b57e73dea97e6a7c2f3b8b21224ce6df 89 SUPERFAMILY SSF55229 32 85 1.44E-17 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 Pfam PF10502 Signal peptidase, peptidase S26 270 310 4.0E-6 T 12-10-2018 IPR019533 Peptidase S26 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 151 163 2.7E-26 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 272 291 2.7E-26 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 87 103 2.7E-26 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 ProSitePatterns PS00501 Signal peptidases I serine active site. 96 103 - T 12-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 SUPERFAMILY SSF51306 85 331 5.23E-77 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 Gene3D G3DSA:2.170.230.10 162 271 3.6E-72 T 12-10-2018 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 Gene3D G3DSA:2.10.109.10 87 312 3.6E-72 T 12-10-2018 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 ProSitePatterns PS00761 Signal peptidases I signature 3. 277 290 - T 12-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 72 166 4.6E-25 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 268 312 3.9E-17 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 ProSitePatterns PS00760 Signal peptidases I lysine active site. 153 165 - T 12-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 YPK_1188 70cbb5e5da4813458dc09c7fbdf6399f 332 Pfam PF00717 Peptidase S24-like 93 166 3.3E-20 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_2849 5013ba42746c9c1b70dd24d4e82c3fe1 376 SUPERFAMILY SSF47240 3 340 1.79E-111 T 12-10-2018 IPR009078 Ferritin-like superfamily YPK_2849 5013ba42746c9c1b70dd24d4e82c3fe1 376 Gene3D G3DSA:1.10.620.20 2 340 6.8E-147 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 YPK_2849 5013ba42746c9c1b70dd24d4e82c3fe1 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 12-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2849 5013ba42746c9c1b70dd24d4e82c3fe1 376 Pfam PF00268 Ribonucleotide reductase, small chain 33 332 1.2E-45 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 462 2.6E-201 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 2.0E-116 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 3.1E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 3.1E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 3.1E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 3.1E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 3.1E-27 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 32.856 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 SUPERFAMILY SSF48163 299 461 3.4E-44 T 12-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 Gene3D G3DSA:3.40.50.620 1 313 1.3E-135 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 Gene3D G3DSA:1.10.10.350 367 470 5.8E-23 T 12-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 YPK_1437 3c0706f46098a26db3f9ed52877d4c8d 471 SUPERFAMILY SSF52374 3 298 2.33E-113 T 12-10-2018 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 SMART SM00874 403 471 1.5E-31 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Gene3D G3DSA:2.40.50.140 39 154 6.3E-74 T 12-10-2018 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 SUPERFAMILY SSF54991 696 794 1.57E-30 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 SUPERFAMILY SSF46955 404 475 1.56E-20 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_1825 6389d1590dcde357259a7d6c692018c9 795 SUPERFAMILY SSF50249 36 195 4.65E-51 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1825 6389d1590dcde357259a7d6c692018c9 795 SUPERFAMILY SSF55681 467 690 8.95E-56 T 12-10-2018 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Pfam PF01588 Putative tRNA binding domain 45 145 2.2E-27 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 SMART SM00873 212 385 1.0E-99 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Gene3D G3DSA:3.30.56.10 7 180 6.3E-74 T 12-10-2018 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 SMART SM00896 701 794 4.1E-45 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 48.401 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Gene3D G3DSA:3.30.56.10 401 475 7.9E-29 T 12-10-2018 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Gene3D G3DSA:3.30.70.380 702 795 5.5E-32 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 1.1E-28 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Pfam PF03483 B3/4 domain 212 385 1.3E-71 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 2.1E-292 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 SUPERFAMILY SSF56037 196 394 8.63E-78 T 12-10-2018 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Gene3D G3DSA:3.30.930.10 485 693 3.0E-65 T 12-10-2018 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 2.1E-20 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 YPK_1825 6389d1590dcde357259a7d6c692018c9 795 Gene3D G3DSA:3.50.40.10 197 395 2.2E-83 T 12-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 YPK_1771 663f1ef6d044793a039eac39b1f3afb2 129 PIRSF PIRSF021320 1 129 3.4E-41 T 12-10-2018 IPR009326 Protein of unknown function DUF984 YPK_1771 663f1ef6d044793a039eac39b1f3afb2 129 SMART SM01022 14 127 7.9E-38 T 12-10-2018 IPR007374 ASCH domain YPK_1771 663f1ef6d044793a039eac39b1f3afb2 129 SUPERFAMILY SSF88697 3 127 2.73E-43 T 12-10-2018 IPR015947 PUA-like superfamily YPK_1771 663f1ef6d044793a039eac39b1f3afb2 129 Pfam PF04266 ASCH domain 23 126 3.6E-22 T 12-10-2018 IPR007374 ASCH domain YPK_1771 663f1ef6d044793a039eac39b1f3afb2 129 Gene3D G3DSA:3.10.400.10 1 129 3.7E-42 T 12-10-2018 YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 SUPERFAMILY SSF141571 506 605 4.19E-12 T 12-10-2018 YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 Gene3D G3DSA:2.160.20.100 416 490 3.2E-13 T 12-10-2018 YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 Gene3D G3DSA:2.160.20.100 491 607 7.0E-15 T 12-10-2018 YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 9 285 2.5E-30 T 12-10-2018 IPR018683 Domain of unknown function DUF2169 YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 SUPERFAMILY SSF141571 424 534 3.01E-21 T 12-10-2018 YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 Gene3D G3DSA:2.160.20.100 608 723 1.9E-18 T 12-10-2018 YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 Pfam PF13599 Pentapeptide repeats (9 copies) 637 711 2.1E-15 T 12-10-2018 IPR001646 Pentapeptide repeat YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 Pfam PF13599 Pentapeptide repeats (9 copies) 424 494 2.7E-12 T 12-10-2018 IPR001646 Pentapeptide repeat YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 Pfam PF13599 Pentapeptide repeats (9 copies) 546 605 2.7E-6 T 12-10-2018 IPR001646 Pentapeptide repeat YPK_3557 5dfe604ef5df038d1288f3cd1e1010e9 739 SUPERFAMILY SSF141571 611 709 2.88E-19 T 12-10-2018 YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 366 474 4.1E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 SUPERFAMILY SSF55874 324 473 4.58E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 SMART SM00388 252 320 2.2E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 316 3.0E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 SMART SM00387 363 475 4.0E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 Gene3D G3DSA:1.10.287.130 196 316 8.4E-18 T 12-10-2018 YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 SUPERFAMILY SSF47384 235 316 4.32E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 Gene3D G3DSA:3.30.565.10 319 474 1.7E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 6.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 6.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1257 768ea62350ea19ea19a80c07fdc8e90d 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 6.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1321 d45d1fa04822ace911dde47f2aa09f38 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 1.3E-91 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 YPK_1321 d45d1fa04822ace911dde47f2aa09f38 266 Gene3D G3DSA:3.40.1190.20 1 266 2.6E-98 T 12-10-2018 IPR029056 Ribokinase-like YPK_1321 d45d1fa04822ace911dde47f2aa09f38 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 7 262 7.7E-100 T 12-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YPK_1321 d45d1fa04822ace911dde47f2aa09f38 266 SUPERFAMILY SSF53613 5 266 2.49E-77 T 12-10-2018 IPR029056 Ribokinase-like YPK_1782 66ceecd20b3b8c89f75e10c2f338b8d8 237 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 237 31.002 T 12-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 YPK_1782 66ceecd20b3b8c89f75e10c2f338b8d8 237 SMART SM00945 5 119 5.0E-61 T 12-10-2018 IPR016103 ProQ/FinO domain YPK_1782 66ceecd20b3b8c89f75e10c2f338b8d8 237 Gene3D G3DSA:1.10.1710.10 1 131 8.8E-25 T 12-10-2018 IPR036442 ProQ/FinO domain superfamily YPK_1782 66ceecd20b3b8c89f75e10c2f338b8d8 237 SUPERFAMILY SSF48657 5 119 1.96E-39 T 12-10-2018 IPR036442 ProQ/FinO domain superfamily YPK_1782 66ceecd20b3b8c89f75e10c2f338b8d8 237 Pfam PF04352 ProQ/FINO family 8 115 7.6E-43 T 12-10-2018 IPR016103 ProQ/FinO domain YPK_1782 66ceecd20b3b8c89f75e10c2f338b8d8 237 Pfam PF17516 ProQ C-terminal domain 187 237 7.9E-25 T 12-10-2018 IPR035236 RNA chaperone ProQ, C-terminal YPK_3267 384323a82ef4ea13f5ec605410948793 200 SUPERFAMILY SSF52833 1 194 3.69E-65 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_3267 384323a82ef4ea13f5ec605410948793 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 6.4E-11 T 12-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YPK_3267 384323a82ef4ea13f5ec605410948793 200 Gene3D G3DSA:3.40.30.10 1 197 3.7E-72 T 12-10-2018 YPK_3267 384323a82ef4ea13f5ec605410948793 200 PIRSF PIRSF000239 1 199 7.4E-58 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YPK_3267 384323a82ef4ea13f5ec605410948793 200 Pfam PF00578 AhpC/TSA family 5 139 1.8E-35 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YPK_2815 a9146ac89057890864af71d02a784f31 468 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 21 120 2.0E-55 T 12-10-2018 IPR009826 DNA circulation, N-terminal YPK_2815 a9146ac89057890864af71d02a784f31 468 Pfam PF07157 DNA circularisation protein N-terminus 25 118 3.6E-33 T 12-10-2018 IPR009826 DNA circulation, N-terminal YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 PIRSF PIRSF000770 5 285 5.3E-32 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 Pfam PF00140 Sigma-70 factor, region 1.2 15 40 4.4E-7 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 Gene3D G3DSA:1.20.120.1810 2 122 8.5E-27 T 12-10-2018 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 54.404 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 Pfam PF04542 Sigma-70 region 2 53 122 3.3E-16 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 280 3.6E-35 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 Pfam PF04545 Sigma-70, region 4 229 280 3.2E-16 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 Gene3D G3DSA:1.10.10.10 214 284 3.3E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 SUPERFAMILY SSF88659 200 284 6.35E-19 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 SUPERFAMILY SSF88946 12 122 2.98E-39 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 284 1.1E-129 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.9E-19 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 PRINTS PR00046 Major sigma-70 factor signature 253 268 3.9E-19 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 PRINTS PR00046 Major sigma-70 factor signature 233 245 3.9E-19 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3976 e6c92e9866a4ea59bb415044653d9d00 285 PRINTS PR00046 Major sigma-70 factor signature 268 279 3.9E-19 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 Pfam PF00472 RF-1 domain 173 282 2.4E-41 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 Gene3D G3DSA:3.30.160.20 171 266 7.6E-98 T 12-10-2018 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 Gene3D G3DSA:3.30.70.1660 75 303 7.6E-98 T 12-10-2018 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 Gene3D G3DSA:1.20.58.410 1 61 3.8E-15 T 12-10-2018 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 SMART SM00937 30 140 1.5E-55 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 SUPERFAMILY SSF75620 1 309 1.44E-134 T 12-10-2018 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 310 33.627 T 12-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 Pfam PF03462 PCRF domain 2 164 2.3E-50 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 308 1.5E-156 T 12-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 YPK_0923 40bd4f236ba494537a8600d70815d5cc 310 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 190 206 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YPK_3636 54e7ce9d401f8218bf3b4b43805e2203 347 Gene3D G3DSA:3.40.50.150 159 339 1.8E-45 T 12-10-2018 YPK_3636 54e7ce9d401f8218bf3b4b43805e2203 347 Pfam PF05175 Methyltransferase small domain 167 333 2.4E-57 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 YPK_3636 54e7ce9d401f8218bf3b4b43805e2203 347 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 4.7E-58 T 12-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 YPK_3636 54e7ce9d401f8218bf3b4b43805e2203 347 Gene3D G3DSA:3.40.50.150 1 158 9.0E-59 T 12-10-2018 YPK_3636 54e7ce9d401f8218bf3b4b43805e2203 347 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 45.019 T 12-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 YPK_3636 54e7ce9d401f8218bf3b4b43805e2203 347 SUPERFAMILY SSF53335 154 315 3.29E-27 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3636 54e7ce9d401f8218bf3b4b43805e2203 347 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_0398 51ee6d0ee6e2fd53bf976e6b3c90973d 462 Pfam PF06812 ImpA, N-terminal, type VI secretion system 15 112 1.9E-11 T 12-10-2018 IPR010657 ImpA, N-terminal YPK_0398 51ee6d0ee6e2fd53bf976e6b3c90973d 462 Pfam PF16989 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ 215 454 1.5E-77 T 12-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 YPK_0398 51ee6d0ee6e2fd53bf976e6b3c90973d 462 TIGRFAM TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family 9 457 3.3E-158 T 12-10-2018 IPR017739 Type VI secretion system-associated, VCA0119 YPK_4001 3831f2924869941e764b49e39660f68f 296 TIGRFAM TIGR00688 rarD: protein RarD 8 261 7.0E-99 T 12-10-2018 IPR004626 RarD protein GO:0005887 YPK_4001 3831f2924869941e764b49e39660f68f 296 SUPERFAMILY SSF103481 42 146 1.96E-16 T 12-10-2018 YPK_4001 3831f2924869941e764b49e39660f68f 296 Pfam PF00892 EamA-like transporter family 9 142 2.5E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_4001 3831f2924869941e764b49e39660f68f 296 SUPERFAMILY SSF103481 190 285 1.44E-6 T 12-10-2018 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 PRINTS PR00147 DNA photolyase signature 145 161 5.7E-30 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 PRINTS PR00147 DNA photolyase signature 384 398 5.7E-30 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 PRINTS PR00147 DNA photolyase signature 345 363 5.7E-30 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 PRINTS PR00147 DNA photolyase signature 325 341 5.7E-30 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 Pfam PF00875 DNA photolyase 5 175 6.7E-43 T 12-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 SUPERFAMILY SSF48173 192 472 6.54E-108 T 12-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 Gene3D G3DSA:1.10.579.10 293 475 5.7E-82 T 12-10-2018 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 Gene3D G3DSA:3.40.50.620 5 204 1.1E-77 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 Pfam PF03441 FAD binding domain of DNA photolyase 275 469 2.1E-81 T 12-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 SUPERFAMILY SSF52425 3 183 8.63E-54 T 12-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 345 364 - T 12-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 12-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal YPK_1163 50ca10115996e72a01508a4ba8a04e5b 487 Gene3D G3DSA:1.25.40.80 134 289 1.1E-77 T 12-10-2018 YPK_0311 8ffc9ae31aec777d1f366a4b667dbe23 66 Pfam PF03889 Domain of unknown function 9 45 1.2E-22 T 12-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 Gene3D G3DSA:1.20.1250.20 209 410 1.8E-61 T 12-10-2018 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 13 408 4.5E-191 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 Gene3D G3DSA:1.20.1250.20 9 208 2.5E-55 T 12-10-2018 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 110 132 3.8E-106 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 353 373 3.8E-106 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 152 170 3.8E-106 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 291 317 3.8E-106 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 267 288 3.8E-106 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 75 104 3.8E-106 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 221 249 3.8E-106 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 PRINTS PR00174 LacY proton/sugar symporter family signature 322 341 3.8E-106 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 Pfam PF01306 LacY proton/sugar symporter 9 412 3.2E-191 T 12-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 YPK_2492 9f068cf6292487a03b264f016e6b820a 435 SUPERFAMILY SSF103473 12 407 1.96E-48 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1303 a388fde768159065350341798453419e 525 Gene3D G3DSA:3.30.300.10 406 525 1.2E-51 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 Pfam PF00958 GMP synthase C terminal domain 433 524 6.7E-44 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 YPK_1303 a388fde768159065350341798453419e 525 Pfam PF02540 NAD synthase 223 254 6.6E-6 T 12-10-2018 IPR022310 NAD/GMP synthase YPK_1303 a388fde768159065350341798453419e 525 Gene3D G3DSA:3.40.50.880 9 206 9.6E-54 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_1303 a388fde768159065350341798453419e 525 SUPERFAMILY SSF52317 4 204 1.1E-54 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_1303 a388fde768159065350341798453419e 525 PRINTS PR00097 Anthranilate synthase component II signature 10 24 4.4E-6 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 4.4E-6 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 4.4E-6 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 55.606 T 12-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 YPK_1303 a388fde768159065350341798453419e 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.5E-6 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.5E-6 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 1.5E-6 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 SUPERFAMILY SSF52402 197 420 1.01E-55 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 SUPERFAMILY SSF54810 405 525 1.57E-51 T 12-10-2018 YPK_1303 a388fde768159065350341798453419e 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 525 2.8E-154 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 YPK_1303 a388fde768159065350341798453419e 525 Pfam PF00117 Glutamine amidotransferase class-I 12 199 4.4E-38 T 12-10-2018 IPR017926 Glutamine amidotransferase YPK_1303 a388fde768159065350341798453419e 525 Gene3D G3DSA:3.40.50.620 209 405 1.0E-72 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1303 a388fde768159065350341798453419e 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 1.7E-80 T 12-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 YPK_2064 8f3632fea8b61d93e42dd65cd43626ef 117 Pfam PF04269 Protein of unknown function, DUF440 16 117 5.2E-47 T 12-10-2018 IPR007376 dsDNA mimic, putative YPK_2064 8f3632fea8b61d93e42dd65cd43626ef 117 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 15 117 5.0E-54 T 12-10-2018 IPR007376 dsDNA mimic, putative YPK_2064 8f3632fea8b61d93e42dd65cd43626ef 117 Gene3D G3DSA:3.10.450.140 17 117 5.9E-43 T 12-10-2018 IPR036763 Putative dsDNA mimic superfamily YPK_2064 8f3632fea8b61d93e42dd65cd43626ef 117 Hamap MF_00680 UPF0263 protein YciU [yciU]. 13 117 34.84 T 12-10-2018 IPR007376 dsDNA mimic, putative YPK_2064 8f3632fea8b61d93e42dd65cd43626ef 117 SUPERFAMILY SSF102816 11 117 3.53E-52 T 12-10-2018 IPR036763 Putative dsDNA mimic superfamily YPK_2064 8f3632fea8b61d93e42dd65cd43626ef 117 PIRSF PIRSF004916 9 117 2.9E-56 T 12-10-2018 IPR007376 dsDNA mimic, putative YPK_2550 9c8f6948af758f8f4cf9138c91fa2689 618 Pfam PF05170 AsmA family 2 233 9.6E-22 T 12-10-2018 IPR007844 AsmA YPK_2550 9c8f6948af758f8f4cf9138c91fa2689 618 Pfam PF13502 AsmA-like C-terminal region 359 549 7.3E-21 T 12-10-2018 IPR032712 AsmA-like, C-terminal YPK_2933 b08926ea0389d5dd47ece9323527b134 334 SUPERFAMILY SSF50974 5 291 5.1E-54 T 12-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 YPK_2933 b08926ea0389d5dd47ece9323527b134 334 Gene3D G3DSA:2.130.10.10 1 334 3.1E-122 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 YPK_2933 b08926ea0389d5dd47ece9323527b134 334 Pfam PF10282 Lactonase, 7-bladed beta-propeller 6 327 1.4E-93 T 12-10-2018 IPR019405 Lactonase, 7-bladed beta propeller YPK_2933 b08926ea0389d5dd47ece9323527b134 334 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 58.227 T 12-10-2018 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 YPK_2889 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2889 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2889 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2889 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3209 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3209 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3209 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3209 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_0279 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_0279 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_0279 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_0279 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3173 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3173 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_3173 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_3173 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2631 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2631 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2631 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2631 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_0848 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_0848 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_0848 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_0848 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2234 2f72638d939d64c3e747112eb659c1ff 152 SUPERFAMILY SSF143422 1 129 1.03E-46 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2234 2f72638d939d64c3e747112eb659c1ff 152 SMART SM01321 11 129 2.7E-38 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2234 2f72638d939d64c3e747112eb659c1ff 152 Gene3D G3DSA:3.30.70.1290 3 136 8.6E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 YPK_2234 2f72638d939d64c3e747112eb659c1ff 152 Pfam PF01797 Transposase IS200 like 12 129 4.0E-36 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 Gene3D G3DSA:3.40.50.1970 450 643 4.2E-58 T 12-10-2018 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 850 1.8E-114 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 Gene3D G3DSA:1.20.1090.10 645 865 1.8E-61 T 12-10-2018 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 Gene3D G3DSA:3.40.309.10 218 404 8.8E-181 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 SUPERFAMILY SSF53720 6 453 2.62E-83 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 Pfam PF00171 Aldehyde dehydrogenase family 5 399 1.1E-27 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 PIRSF PIRSF000111 1 866 0.0 T 12-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 SUPERFAMILY SSF56796 451 864 4.58E-119 T 12-10-2018 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 Gene3D G3DSA:3.40.605.10 10 444 8.8E-181 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_2072 b49b8ee4539c5f751d84c2f17dd11ace 891 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YPK_1268 7286af912823b9507641416bb7c779ab 179 Pfam PF13505 Outer membrane protein beta-barrel domain 11 179 8.1E-34 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel YPK_1268 7286af912823b9507641416bb7c779ab 179 Gene3D G3DSA:2.40.160.20 23 179 3.9E-66 T 12-10-2018 YPK_1268 7286af912823b9507641416bb7c779ab 179 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 171 179 - T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1268 7286af912823b9507641416bb7c779ab 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 140 161 2.9E-36 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1268 7286af912823b9507641416bb7c779ab 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 93 116 2.9E-36 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1268 7286af912823b9507641416bb7c779ab 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 50 62 2.9E-36 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1268 7286af912823b9507641416bb7c779ab 179 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 167 178 2.9E-36 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1268 7286af912823b9507641416bb7c779ab 179 SUPERFAMILY SSF56925 29 179 4.97E-33 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_1268 7286af912823b9507641416bb7c779ab 179 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 51 59 - T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_0811 7e625baec96e567b38480f3393439148 720 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 350 364 - T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 YPK_0811 7e625baec96e567b38480f3393439148 720 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 718 0.0 T 12-10-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 YPK_0811 7e625baec96e567b38480f3393439148 720 Gene3D G3DSA:3.90.1150.10 421 600 6.6E-71 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_0811 7e625baec96e567b38480f3393439148 720 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 109 550 1.5E-194 T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 YPK_0811 7e625baec96e567b38480f3393439148 720 SUPERFAMILY SSF53383 109 566 1.54E-117 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0811 7e625baec96e567b38480f3393439148 720 Gene3D G3DSA:3.40.640.10 109 420 2.3E-86 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0811 7e625baec96e567b38480f3393439148 720 SUPERFAMILY SSF52172 1 108 2.44E-31 T 12-10-2018 IPR011006 CheY-like superfamily YPK_0811 7e625baec96e567b38480f3393439148 720 Gene3D G3DSA:3.40.50.220 2 108 3.2E-23 T 12-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 YPK_0811 7e625baec96e567b38480f3393439148 720 PIRSF PIRSF009393 2 720 5.4E-291 T 12-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 YPK_0811 7e625baec96e567b38480f3393439148 720 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 576 705 2.6E-48 T 12-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 YPK_0811 7e625baec96e567b38480f3393439148 720 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 103 9.5E-22 T 12-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 YPK_0811 7e625baec96e567b38480f3393439148 720 SUPERFAMILY SSF55904 571 719 1.57E-46 T 12-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 YPK_0811 7e625baec96e567b38480f3393439148 720 Gene3D G3DSA:3.90.100.10 601 720 4.3E-41 T 12-10-2018 YPK_0666 168ea798194009437d59340d88667f4c 775 SUPERFAMILY SSF102114 361 649 1.57E-10 T 12-10-2018 YPK_0666 168ea798194009437d59340d88667f4c 775 Pfam PF04055 Radical SAM superfamily 376 581 1.5E-19 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_0666 168ea798194009437d59340d88667f4c 775 SMART SM00729 372 622 2.0E-6 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_0666 168ea798194009437d59340d88667f4c 775 Pfam PF11842 Domain of unknown function (DUF3362) 590 728 1.4E-42 T 12-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal YPK_0666 168ea798194009437d59340d88667f4c 775 Pfam PF08497 Radical SAM N-terminal 28 375 9.1E-146 T 12-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal YPK_0666 168ea798194009437d59340d88667f4c 775 Gene3D G3DSA:3.80.30.20 371 625 1.7E-13 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YPK_0666 168ea798194009437d59340d88667f4c 775 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 28 640 2.4E-266 T 12-10-2018 IPR022946 Uncharacterised protein family UPF0313 YPK_0666 168ea798194009437d59340d88667f4c 775 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 28 642 50.747 T 12-10-2018 IPR022946 Uncharacterised protein family UPF0313 YPK_0666 168ea798194009437d59340d88667f4c 775 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 376 396 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 YPK_3698 fe75ebc912d84ce26982e034978bba48 263 PIRSF PIRSF037116 1 263 8.8E-142 T 12-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK YPK_3698 fe75ebc912d84ce26982e034978bba48 263 SUPERFAMILY SSF52540 7 259 1.13E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3698 fe75ebc912d84ce26982e034978bba48 263 Pfam PF00005 ABC transporter 28 184 4.2E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3698 fe75ebc912d84ce26982e034978bba48 263 SMART SM00382 36 234 3.3E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3698 fe75ebc912d84ce26982e034978bba48 263 Gene3D G3DSA:3.40.50.300 9 263 8.1E-68 T 12-10-2018 YPK_3698 fe75ebc912d84ce26982e034978bba48 263 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 9 261 1.6E-119 T 12-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK YPK_3698 fe75ebc912d84ce26982e034978bba48 263 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 Gene3D G3DSA:3.90.1150.10 10 415 3.7E-174 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 424 50.83 T 12-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 PIRSF PIRSF000521 183 422 2.7E-21 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 PIRSF PIRSF000521 31 164 7.0E-7 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 279 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 13 420 5.2E-185 T 12-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 SUPERFAMILY SSF53383 1 420 1.22E-133 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 Gene3D G3DSA:3.40.640.10 61 330 3.7E-174 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2932 6cb936fd9f1e99af4b1cb73a0ddcd790 426 Pfam PF00202 Aminotransferase class-III 27 417 1.4E-129 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_2545 b0917461834f81eebce44e4a68286e56 192 Gene3D G3DSA:3.40.630.30 3 183 1.6E-46 T 12-10-2018 YPK_2545 b0917461834f81eebce44e4a68286e56 192 SMART SM01006 21 70 3.1E-7 T 12-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain YPK_2545 b0917461834f81eebce44e4a68286e56 192 SUPERFAMILY SSF55729 16 181 1.19E-42 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_2545 b0917461834f81eebce44e4a68286e56 192 Pfam PF13523 Acetyltransferase (GNAT) domain 26 167 8.5E-45 T 12-10-2018 YPK_2758 75b2f67f489a700656698a647969b436 273 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 117 134 - T 12-10-2018 IPR018046 Pili assembly chaperone, conserved site YPK_2758 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 155 170 1.3E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2758 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 45 54 1.3E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2758 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 118 135 1.3E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2758 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 90 111 1.3E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2758 75b2f67f489a700656698a647969b436 273 PRINTS PR00969 Pili chaperone signature 190 205 1.3E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2758 75b2f67f489a700656698a647969b436 273 SUPERFAMILY SSF49354 41 172 5.79E-36 T 12-10-2018 IPR008962 PapD-like superfamily YPK_2758 75b2f67f489a700656698a647969b436 273 Gene3D G3DSA:2.60.40.10 175 269 2.6E-29 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2758 75b2f67f489a700656698a647969b436 273 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 45 173 1.1E-36 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_2758 75b2f67f489a700656698a647969b436 273 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 195 265 5.0E-17 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_2758 75b2f67f489a700656698a647969b436 273 SUPERFAMILY SSF49584 167 269 2.35E-19 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_2758 75b2f67f489a700656698a647969b436 273 Gene3D G3DSA:2.60.40.10 45 171 8.8E-42 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3800 0f71988613898b52bcfef47594a34422 313 SUPERFAMILY SSF52540 13 155 1.19E-17 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3800 0f71988613898b52bcfef47594a34422 313 Pfam PF01715 IPP transferase 46 291 6.4E-84 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 YPK_3800 0f71988613898b52bcfef47594a34422 313 Gene3D G3DSA:1.10.20.140 119 190 7.6E-104 T 12-10-2018 YPK_3800 0f71988613898b52bcfef47594a34422 313 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 299 1.0E-119 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 YPK_3800 0f71988613898b52bcfef47594a34422 313 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 312 29.522 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 YPK_3800 0f71988613898b52bcfef47594a34422 313 Gene3D G3DSA:3.40.50.300 16 296 7.6E-104 T 12-10-2018 YPK_3297 920ac407eb6dcc2210e6226aa58cd90c 315 SUPERFAMILY SSF51695 25 307 2.62E-44 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_3297 920ac407eb6dcc2210e6226aa58cd90c 315 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 32 301 2.7E-17 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YPK_3297 920ac407eb6dcc2210e6226aa58cd90c 315 Gene3D G3DSA:3.20.20.190 12 315 6.1E-34 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_0827 dfb4047dad46c20e81c1fbada1b64d4d 197 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 196 50.686 T 12-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 YPK_0827 dfb4047dad46c20e81c1fbada1b64d4d 197 Pfam PF01725 Ham1 family 4 192 5.3E-58 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 YPK_0827 dfb4047dad46c20e81c1fbada1b64d4d 197 SUPERFAMILY SSF52972 1 195 3.92E-75 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_0827 dfb4047dad46c20e81c1fbada1b64d4d 197 Gene3D G3DSA:3.90.950.10 1 197 4.5E-84 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_0827 dfb4047dad46c20e81c1fbada1b64d4d 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 194 1.1E-67 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 181 196 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 SUPERFAMILY SSF142984 257 339 6.28E-22 T 12-10-2018 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 Gene3D G3DSA:3.10.20.600 248 342 2.1E-28 T 12-10-2018 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 20 432 2.9E-201 T 12-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 SMART SM00928 345 390 2.4E-21 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 SUPERFAMILY SSF140490 343 433 7.72E-31 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 358 369 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 61 233 3.6E-50 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 348 430 5.1E-26 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 Gene3D G3DSA:1.20.1440.230 343 443 1.1E-27 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 Gene3D G3DSA:3.40.50.11540 66 245 2.0E-78 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1564 0299365bfc70e93586f992d66e8cb26e 461 SUPERFAMILY SSF142019 23 252 1.31E-85 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_2107 d2b93f53e4613deb71286c1961cbe9e6 434 Gene3D G3DSA:3.30.9.10 134 361 2.2E-51 T 12-10-2018 YPK_2107 d2b93f53e4613deb71286c1961cbe9e6 434 Gene3D G3DSA:3.50.50.60 105 404 2.2E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2107 d2b93f53e4613deb71286c1961cbe9e6 434 SUPERFAMILY SSF51905 1 418 2.85E-54 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2107 d2b93f53e4613deb71286c1961cbe9e6 434 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 52.832 T 12-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 YPK_2107 d2b93f53e4613deb71286c1961cbe9e6 434 Gene3D G3DSA:3.50.50.60 1 85 2.7E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2107 d2b93f53e4613deb71286c1961cbe9e6 434 SUPERFAMILY SSF54373 269 359 1.96E-17 T 12-10-2018 YPK_2107 d2b93f53e4613deb71286c1961cbe9e6 434 Pfam PF01266 FAD dependent oxidoreductase 2 397 6.1E-76 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YPK_1076 b4103add422614b2f10e7040b97955e8 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_1076 b4103add422614b2f10e7040b97955e8 340 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 1.5E-124 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 YPK_1076 b4103add422614b2f10e7040b97955e8 340 SUPERFAMILY SSF51161 33 316 1.18E-86 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily YPK_1076 b4103add422614b2f10e7040b97955e8 340 Gene3D G3DSA:3.40.1390.10 1 99 9.4E-37 T 12-10-2018 YPK_1076 b4103add422614b2f10e7040b97955e8 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_1076 b4103add422614b2f10e7040b97955e8 340 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.424 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 YPK_1076 b4103add422614b2f10e7040b97955e8 340 Gene3D G3DSA:2.160.10.10 100 309 4.8E-67 T 12-10-2018 YPK_1076 b4103add422614b2f10e7040b97955e8 340 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 4.4E-23 T 12-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 YPK_1076 b4103add422614b2f10e7040b97955e8 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 1.5E-8 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_1076 b4103add422614b2f10e7040b97955e8 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 179 3.8E-8 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_1076 b4103add422614b2f10e7040b97955e8 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 255 6.8E-7 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_1635 bf0dc11bc3bf7fe90aab8edad11ab82b 291 SUPERFAMILY SSF161098 53 277 4.84E-44 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1635 bf0dc11bc3bf7fe90aab8edad11ab82b 291 Gene3D G3DSA:1.10.3720.10 49 289 1.1E-48 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1635 bf0dc11bc3bf7fe90aab8edad11ab82b 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 70 278 5.3E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1891 a4768dc5e1796488c1c4b179592f5e8d 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 5.2E-44 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1891 a4768dc5e1796488c1c4b179592f5e8d 321 SUPERFAMILY SSF161098 69 300 3.4E-24 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1544 057ebfca7dcd4f34525ab2e4cfaa8361 183 Gene3D G3DSA:3.60.21.10 1 183 1.3E-67 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like YPK_1544 057ebfca7dcd4f34525ab2e4cfaa8361 183 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 120 144 - T 12-10-2018 IPR020935 Phosphodiesterase YfcE, conserved site YPK_1544 057ebfca7dcd4f34525ab2e4cfaa8361 183 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 167 9.5E-38 T 12-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 YPK_1544 057ebfca7dcd4f34525ab2e4cfaa8361 183 SUPERFAMILY SSF56300 1 174 2.06E-36 T 12-10-2018 YPK_1544 057ebfca7dcd4f34525ab2e4cfaa8361 183 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 161 1.8E-22 T 12-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 YPK_3206 04e9e7613edab25d7d9c910cc3e46883 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 5.9E-18 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_3206 04e9e7613edab25d7d9c910cc3e46883 218 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 202 1.2E-54 T 12-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 YPK_3206 04e9e7613edab25d7d9c910cc3e46883 218 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPK_3206 04e9e7613edab25d7d9c910cc3e46883 218 SUPERFAMILY SSF46689 2 78 1.75E-19 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3206 04e9e7613edab25d7d9c910cc3e46883 218 SUPERFAMILY SSF48498 85 203 5.34E-13 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPK_3206 04e9e7613edab25d7d9c910cc3e46883 218 Gene3D G3DSA:1.10.357.10 1 215 3.9E-79 T 12-10-2018 YPK_3206 04e9e7613edab25d7d9c910cc3e46883 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 7.4E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_3206 04e9e7613edab25d7d9c910cc3e46883 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 7.4E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 12-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 Gene3D G3DSA:2.60.120.10 43 164 6.4E-48 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 SMART SM00100 30 151 3.1E-21 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 SUPERFAMILY SSF46785 165 245 3.79E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 Pfam PF13545 Crp-like helix-turn-helix domain 168 242 2.4E-16 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 SMART SM00419 187 235 1.7E-13 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 4.0E-15 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 Gene3D G3DSA:1.10.10.10 165 247 2.6E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 8.8E-12 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 8.8E-12 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 YPK_1944 0184f3eec9b3baa691301acbf81273e4 250 SUPERFAMILY SSF51206 23 162 4.06E-31 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 SMART SM00388 280 350 5.2E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 346 2.5E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 Gene3D G3DSA:3.30.565.10 352 509 9.6E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 SUPERFAMILY SSF55874 340 501 1.83E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 SUPERFAMILY SSF47384 265 347 3.73E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 Gene3D G3DSA:1.10.287.130 274 349 1.2E-17 T 12-10-2018 YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 SMART SM00387 391 502 6.4E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 391 501 4.1E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 499 1.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 456 1.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 481 1.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1415 c78cb26d8f29d496881aaede08265e0d 514 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 442 1.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 Gene3D G3DSA:3.40.50.80 256 396 1.8E-32 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 SUPERFAMILY SSF46458 1 142 1.83E-39 T 12-10-2018 IPR009050 Globin-like superfamily YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 Pfam PF00970 Oxidoreductase FAD-binding domain 156 252 2.2E-10 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 358 366 5.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 183 193 5.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 263 282 5.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 211 5.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 SUPERFAMILY SSF63380 148 253 9.03E-29 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 Gene3D G3DSA:2.40.30.10 149 254 2.1E-32 T 12-10-2018 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 58.211 T 12-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 Pfam PF00175 Oxidoreductase NAD-binding domain 264 371 3.0E-15 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 3.1E-6 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 358 366 3.1E-6 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 3.1E-6 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 3.1E-6 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 SUPERFAMILY SSF52343 254 395 7.46E-38 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 Gene3D G3DSA:1.10.490.10 1 142 9.0E-52 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 YPK_1264 dc149e615b83d5e0c37bf08787661a22 396 Pfam PF00042 Globin 7 102 1.9E-13 T 12-10-2018 IPR000971 Globin GO:0020037 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 Gene3D G3DSA:3.20.20.80 336 823 1.9E-164 T 12-10-2018 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 Gene3D G3DSA:2.60.40.290 28 169 1.4E-61 T 12-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 751 768 1.2E-41 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 438 455 1.2E-41 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 298 318 1.2E-41 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 361 382 1.2E-41 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 733 749 1.2E-41 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 332 349 1.2E-41 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 505 523 1.2E-41 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 532 545 1.2E-41 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 SUPERFAMILY SSF55545 206 337 5.23E-27 T 12-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 SUPERFAMILY SSF81296 786 889 6.3E-39 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_2992 4988dd1149bfee988e4649ef7f102572 891 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 216 334 1.5E-13 T 12-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal YPK_2992 4988dd1149bfee988e4649ef7f102572 891 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 338 769 6.0E-109 T 12-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 810 885 2.6E-32 T 12-10-2018 IPR004867 Chitobiase C-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 SUPERFAMILY SSF49384 29 199 9.83E-71 T 12-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 Pfam PF03173 Putative carbohydrate binding domain 38 196 1.9E-69 T 12-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 Gene3D G3DSA:3.30.379.10 209 335 4.3E-22 T 12-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 YPK_2992 4988dd1149bfee988e4649ef7f102572 891 SUPERFAMILY SSF51445 338 778 5.9E-139 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_2992 4988dd1149bfee988e4649ef7f102572 891 Gene3D G3DSA:2.60.40.10 824 889 2.9E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2992 4988dd1149bfee988e4649ef7f102572 891 SMART SM01081 36 197 5.5E-103 T 12-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 YPK_3177 34559b9cf8c8c1b1bc5917b0c97560bb 383 Gene3D G3DSA:3.30.1890.10 67 333 6.0E-90 T 12-10-2018 YPK_3177 34559b9cf8c8c1b1bc5917b0c97560bb 383 Pfam PF02706 Chain length determinant protein 28 125 5.3E-22 T 12-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 YPK_3177 34559b9cf8c8c1b1bc5917b0c97560bb 383 SUPERFAMILY SSF160355 67 333 3.79E-81 T 12-10-2018 YPK_3177 34559b9cf8c8c1b1bc5917b0c97560bb 383 Gene3D G3DSA:1.10.287.210 210 320 6.0E-90 T 12-10-2018 YPK_1649 836574fa37abd3e91d928173432b81e1 184 Pfam PF09618 CRISPR-associated protein (Cas_Csy4) 4 184 6.9E-65 T 12-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 YPK_1649 836574fa37abd3e91d928173432b81e1 184 Gene3D G3DSA:3.30.70.2540 1 184 1.2E-60 T 12-10-2018 YPK_1649 836574fa37abd3e91d928173432b81e1 184 TIGRFAM TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST 3 184 1.8E-70 T 12-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 Gene3D G3DSA:3.40.50.10750 573 727 4.6E-94 T 12-10-2018 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 SUPERFAMILY SSF53223 10 161 2.16E-52 T 12-10-2018 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 SMART SM00919 163 401 3.5E-140 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 Gene3D G3DSA:3.40.50.10380 1 160 3.8E-68 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 Gene3D G3DSA:3.40.50.10950 447 751 4.6E-94 T 12-10-2018 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 SMART SM01274 18 151 3.6E-79 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 2.1E-99 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 3.1E-17 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 PIRSF PIRSF036684 1 758 0.0 T 12-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 SUPERFAMILY SSF53659 430 755 4.11E-91 T 12-10-2018 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 SUPERFAMILY SSF51735 163 453 1.08E-86 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1391 a7b77130531fd282db78f0d059ed665b 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 5.2E-27 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 Gene3D G3DSA:3.40.50.720 161 446 1.3E-81 T 12-10-2018 YPK_1391 a7b77130531fd282db78f0d059ed665b 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 12-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 YPK_3893 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 Gene3D G3DSA:3.40.50.300 1 266 5.8E-80 T 12-10-2018 YPK_3893 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 Pfam PF00005 ABC transporter 28 176 6.1E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3893 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 SMART SM00382 36 225 5.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3893 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 SUPERFAMILY SSF52540 11 241 7.21E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3893 a2ec89fb7ed0d44f251f7f94b59f2d5f 266 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1541 e2c71c08a045190666eaab4354f9fac7 265 PIRSF PIRSF039085 10 265 1.2E-118 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YPK_1541 e2c71c08a045190666eaab4354f9fac7 265 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1541 e2c71c08a045190666eaab4354f9fac7 265 SUPERFAMILY SSF52540 14 259 5.57E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1541 e2c71c08a045190666eaab4354f9fac7 265 SMART SM00382 38 237 1.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1541 e2c71c08a045190666eaab4354f9fac7 265 Pfam PF00005 ABC transporter 29 189 2.4E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1541 e2c71c08a045190666eaab4354f9fac7 265 Gene3D G3DSA:3.40.50.300 9 265 3.2E-82 T 12-10-2018 YPK_0450 995138dc650ea9ea8b64872112c4245c 224 SMART SM00345 17 75 5.5E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_0450 995138dc650ea9ea8b64872112c4245c 224 SUPERFAMILY SSF46785 7 79 3.78E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0450 995138dc650ea9ea8b64872112c4245c 224 SUPERFAMILY SSF48008 81 217 1.86E-21 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_0450 995138dc650ea9ea8b64872112c4245c 224 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 1.9E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_0450 995138dc650ea9ea8b64872112c4245c 224 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 1.9E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_0450 995138dc650ea9ea8b64872112c4245c 224 SMART SM00895 85 209 7.4E-17 T 12-10-2018 IPR011711 GntR, C-terminal YPK_0450 995138dc650ea9ea8b64872112c4245c 224 Gene3D G3DSA:1.10.10.10 10 76 7.8E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0450 995138dc650ea9ea8b64872112c4245c 224 Gene3D G3DSA:1.20.120.530 79 223 2.2E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_0450 995138dc650ea9ea8b64872112c4245c 224 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 72 6.3E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_0450 995138dc650ea9ea8b64872112c4245c 224 Pfam PF07729 FCD domain 85 208 8.6E-24 T 12-10-2018 IPR011711 GntR, C-terminal YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 Gene3D G3DSA:1.10.10.10 1 63 2.7E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 SMART SM00344 12 121 6.2E-54 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 6.7E-25 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 SUPERFAMILY SSF46785 12 70 5.69E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 58 4.7E-21 T 12-10-2018 YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 SUPERFAMILY SSF54909 74 157 9.52E-22 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_2686 c70a663cd42a8467f0f1c6a41ce19981 164 Gene3D G3DSA:3.30.70.920 64 159 1.7E-24 T 12-10-2018 YPK_3727 fc8b78415808bf4c0d8dc16b979cc7e6 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.924 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3727 fc8b78415808bf4c0d8dc16b979cc7e6 89 Pfam PF00312 Ribosomal protein S15 8 88 3.3E-37 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3727 fc8b78415808bf4c0d8dc16b979cc7e6 89 SUPERFAMILY SSF47060 3 89 2.71E-34 T 12-10-2018 IPR009068 S15/NS1, RNA-binding YPK_3727 fc8b78415808bf4c0d8dc16b979cc7e6 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3727 fc8b78415808bf4c0d8dc16b979cc7e6 89 Gene3D G3DSA:1.10.287.10 2 89 3.7E-37 T 12-10-2018 YPK_3727 fc8b78415808bf4c0d8dc16b979cc7e6 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 3.1E-39 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3727 fc8b78415808bf4c0d8dc16b979cc7e6 89 SMART SM01387 8 88 1.2E-50 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3727 fc8b78415808bf4c0d8dc16b979cc7e6 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 9.0E-40 T 12-10-2018 YPK_1383 240411d9b22267edefdc750ec4cbb0ba 92 Pfam PF09904 Winged helix-turn helix 3 90 2.2E-39 T 12-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 YPK_1383 240411d9b22267edefdc750ec4cbb0ba 92 Gene3D G3DSA:1.10.10.10 2 92 5.4E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1383 240411d9b22267edefdc750ec4cbb0ba 92 PIRSF PIRSF037266 1 92 1.6E-41 T 12-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 YPK_1492 3600f3ec8a2a6fa39255db0247b76ed3 113 Gene3D G3DSA:2.20.25.10 1 42 3.5E-15 T 12-10-2018 YPK_1492 3600f3ec8a2a6fa39255db0247b76ed3 113 SUPERFAMILY SSF57783 3 36 2.55E-12 T 12-10-2018 YPK_1492 3600f3ec8a2a6fa39255db0247b76ed3 113 SUPERFAMILY SSF82057 41 112 9.61E-29 T 12-10-2018 YPK_1492 3600f3ec8a2a6fa39255db0247b76ed3 113 Pfam PF08274 PhnA Zinc-Ribbon 3 32 1.7E-12 T 12-10-2018 IPR013987 PhnA protein, N-terminal YPK_1492 3600f3ec8a2a6fa39255db0247b76ed3 113 Pfam PF03831 PhnA domain 47 112 4.3E-34 T 12-10-2018 IPR013988 PhnA protein, C-terminal YPK_1492 3600f3ec8a2a6fa39255db0247b76ed3 113 Gene3D G3DSA:2.30.30.40 43 113 4.4E-35 T 12-10-2018 YPK_1492 3600f3ec8a2a6fa39255db0247b76ed3 113 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 4 112 2.9E-49 T 12-10-2018 IPR004624 PhnA protein YPK_1204 9513372fb76f010af16688189455e42e 693 SUPERFAMILY SSF56672 188 691 8.89E-67 T 12-10-2018 YPK_1204 9513372fb76f010af16688189455e42e 693 Gene3D G3DSA:3.30.420.10 2 196 3.0E-5 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_1204 9513372fb76f010af16688189455e42e 693 Gene3D G3DSA:3.30.70.370 374 396 1.7E-13 T 12-10-2018 YPK_1204 9513372fb76f010af16688189455e42e 693 Gene3D G3DSA:1.10.150.20 397 517 1.7E-13 T 12-10-2018 YPK_1204 9513372fb76f010af16688189455e42e 693 SUPERFAMILY SSF53098 4 199 1.57E-11 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_1204 9513372fb76f010af16688189455e42e 693 Pfam PF00476 DNA polymerase family A 296 658 4.4E-9 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_1204 9513372fb76f010af16688189455e42e 693 SMART SM00482 374 657 4.0E-9 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 Pfam PF07690 Major Facilitator Superfamily 21 412 1.5E-47 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 305 329 5.2E-10 T 12-10-2018 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 5.2E-10 T 12-10-2018 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 5.2E-10 T 12-10-2018 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 268 293 5.2E-10 T 12-10-2018 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 5.2E-10 T 12-10-2018 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 5.2E-10 T 12-10-2018 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 Gene3D G3DSA:1.20.1250.20 262 455 3.9E-21 T 12-10-2018 YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 SUPERFAMILY SSF103473 8 450 1.31E-62 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1791 fd59c7fb6883fa0cac2989a94dcfe0dc 455 Gene3D G3DSA:1.20.1720.10 17 249 3.1E-45 T 12-10-2018 YPK_2001 a2c74158de24f362a7775c460c81b87f 500 Pfam PF02610 L-arabinose isomerase 5 359 5.0E-178 T 12-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 YPK_2001 a2c74158de24f362a7775c460c81b87f 500 Hamap MF_00519 L-arabinose isomerase [araA]. 1 477 64.751 T 12-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 YPK_2001 a2c74158de24f362a7775c460c81b87f 500 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 1 304 1.0E-169 T 12-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 YPK_2001 a2c74158de24f362a7775c460c81b87f 500 SUPERFAMILY SSF53743 1 326 2.22E-124 T 12-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 YPK_2001 a2c74158de24f362a7775c460c81b87f 500 SUPERFAMILY SSF50443 329 498 1.96E-71 T 12-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal YPK_2001 a2c74158de24f362a7775c460c81b87f 500 Gene3D G3DSA:3.40.50.10940 1 175 1.1E-88 T 12-10-2018 IPR038583 L-arabinose isomerase, N-terminal domain superfamily KEGG: 00040+5.3.1.4 YPK_2001 a2c74158de24f362a7775c460c81b87f 500 Pfam PF11762 L-arabinose isomerase C-terminal domain 363 476 1.4E-46 T 12-10-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 YPK_2001 a2c74158de24f362a7775c460c81b87f 500 PIRSF PIRSF001478 1 500 2.3E-259 T 12-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 Pfam PF02040 Arsenical pump membrane protein 4 423 2.5E-160 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 1.0E-119 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 1.0E-119 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 1.0E-119 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 1.0E-119 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 1.0E-119 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 1.0E-119 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 1.0E-119 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 1.0E-119 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_3416 bbc36e38f32eabfdb72ead1b1e3b7090 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 427 2.3E-217 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 YPK_4060 1021dc1677af3d1df977afe9ee2bfb49 85 Pfam PF13710 ACT domain 13 73 3.2E-27 T 12-10-2018 YPK_4060 1021dc1677af3d1df977afe9ee2bfb49 85 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 81 0.009 T 12-10-2018 YPK_4060 1021dc1677af3d1df977afe9ee2bfb49 85 Gene3D G3DSA:3.30.70.260 1 85 2.0E-8 T 12-10-2018 YPK_4060 1021dc1677af3d1df977afe9ee2bfb49 85 SUPERFAMILY SSF55021 3 76 2.25E-13 T 12-10-2018 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 SUPERFAMILY SSF74731 3 117 1.83E-50 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.175 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 Gene3D G3DSA:1.10.1900.20 56 118 2.8E-29 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 3.2E-53 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 Gene3D G3DSA:1.10.720.90 2 55 5.5E-25 T 12-10-2018 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 4.0E-14 T 12-10-2018 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.2E-42 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.2E-42 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.2E-42 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1823 1f408ec68b6a84a9184df911d1597b81 118 Pfam PF00453 Ribosomal protein L20 3 109 5.1E-49 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_2729 68ff700802ade253dec780e778cbeeba 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2729 68ff700802ade253dec780e778cbeeba 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 1.1E-146 T 12-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 YPK_2729 68ff700802ade253dec780e778cbeeba 377 SMART SM00382 44 227 1.5E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2729 68ff700802ade253dec780e778cbeeba 377 SUPERFAMILY SSF50331 252 375 2.28E-17 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2729 68ff700802ade253dec780e778cbeeba 377 Gene3D G3DSA:2.40.50.940 239 301 7.1E-11 T 12-10-2018 YPK_2729 68ff700802ade253dec780e778cbeeba 377 Pfam PF00005 ABC transporter 36 177 2.3E-39 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2729 68ff700802ade253dec780e778cbeeba 377 Gene3D G3DSA:2.40.50.140 302 356 7.1E-11 T 12-10-2018 YPK_2729 68ff700802ade253dec780e778cbeeba 377 SUPERFAMILY SSF52540 19 257 1.02E-88 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2729 68ff700802ade253dec780e778cbeeba 377 Gene3D G3DSA:3.40.50.300 19 238 4.1E-71 T 12-10-2018 YPK_2729 68ff700802ade253dec780e778cbeeba 377 Pfam PF08402 TOBE domain 295 375 3.5E-20 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_1588 1d9c7b6c4643e1f3ec46b529e26d4160 455 Hamap MF_01935 Isochorismate synthase MenF [menF]. 3 448 29.756 T 12-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 YPK_1588 1d9c7b6c4643e1f3ec46b529e26d4160 455 SUPERFAMILY SSF56322 23 446 2.09E-97 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_1588 1d9c7b6c4643e1f3ec46b529e26d4160 455 Gene3D G3DSA:3.60.120.10 1 455 9.3E-173 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_1588 1d9c7b6c4643e1f3ec46b529e26d4160 455 Pfam PF00425 chorismate binding enzyme 189 438 4.4E-65 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YPK_1588 1d9c7b6c4643e1f3ec46b529e26d4160 455 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 120 444 1.9E-102 T 12-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 2.8E-16 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 2.8E-16 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 2.8E-16 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 2.8E-16 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 Gene3D G3DSA:3.40.50.150 8 237 1.2E-74 T 12-10-2018 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 TIGRFAM TIGR00571 dam: DNA adenine methylase 7 267 1.0E-81 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 249 1.2E-61 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 Gene3D G3DSA:1.10.1020.10 57 156 1.2E-74 T 12-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 SUPERFAMILY SSF53335 6 267 8.97E-69 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2320 f19b948f4a37ad9a27ca98b1de12d3db 272 PIRSF PIRSF000398 1 271 1.7E-59 T 12-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 YPK_0489 3bf17bb2e1aebfabf796823c2ae5cc12 182 Pfam PF04751 Protein of unknown function (DUF615) 25 175 2.8E-57 T 12-10-2018 IPR006839 Ribosome-associated, YjgA YPK_0489 3bf17bb2e1aebfabf796823c2ae5cc12 182 Gene3D G3DSA:1.10.60.30 35 109 1.5E-21 T 12-10-2018 YPK_0489 3bf17bb2e1aebfabf796823c2ae5cc12 182 PIRSF PIRSF016183 9 182 1.8E-73 T 12-10-2018 IPR006839 Ribosome-associated, YjgA YPK_0489 3bf17bb2e1aebfabf796823c2ae5cc12 182 Gene3D G3DSA:1.10.60.30 111 182 1.6E-29 T 12-10-2018 YPK_0489 3bf17bb2e1aebfabf796823c2ae5cc12 182 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 15 179 24.021 T 12-10-2018 IPR006839 Ribosome-associated, YjgA YPK_0489 3bf17bb2e1aebfabf796823c2ae5cc12 182 SUPERFAMILY SSF158710 36 179 7.32E-53 T 12-10-2018 IPR023153 PSPTO4464-like domain superfamily YPK_0165 8607cac34339f5ddfbcf98a94f3369f4 258 Gene3D G3DSA:3.40.50.1820 1 255 1.3E-72 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0165 8607cac34339f5ddfbcf98a94f3369f4 258 SUPERFAMILY SSF53474 3 252 5.73E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0165 8607cac34339f5ddfbcf98a94f3369f4 258 Pfam PF00561 alpha/beta hydrolase fold 16 242 2.4E-24 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_0165 8607cac34339f5ddfbcf98a94f3369f4 258 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 4 254 47.43 T 12-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 YPK_0165 8607cac34339f5ddfbcf98a94f3369f4 258 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 10 252 1.4E-100 T 12-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 YPK_3814 52d71e950d3f2b92764c013c05131342 244 Gene3D G3DSA:3.10.20.30 3 106 8.7E-35 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_3814 52d71e950d3f2b92764c013c05131342 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 8.1E-12 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3814 52d71e950d3f2b92764c013c05131342 244 SUPERFAMILY SSF54292 4 106 7.01E-29 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_3814 52d71e950d3f2b92764c013c05131342 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3814 52d71e950d3f2b92764c013c05131342 244 Gene3D G3DSA:1.10.1060.10 107 244 4.4E-51 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_3814 52d71e950d3f2b92764c013c05131342 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YPK_3814 52d71e950d3f2b92764c013c05131342 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 3.2E-97 T 12-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3814 52d71e950d3f2b92764c013c05131342 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 8.7E-32 T 12-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3814 52d71e950d3f2b92764c013c05131342 244 SUPERFAMILY SSF46548 107 229 7.32E-32 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_2747 ef8a3111e7f5fac1f5a27c69a492ed33 206 SUPERFAMILY SSF47616 72 202 4.46E-25 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPK_2747 ef8a3111e7f5fac1f5a27c69a492ed33 206 SUPERFAMILY SSF52833 1 83 3.77E-24 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_2747 ef8a3111e7f5fac1f5a27c69a492ed33 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 9 80 1.1E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YPK_2747 ef8a3111e7f5fac1f5a27c69a492ed33 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 115 194 1.7E-5 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal YPK_2747 ef8a3111e7f5fac1f5a27c69a492ed33 206 Gene3D G3DSA:1.20.1050.10 85 201 7.2E-41 T 12-10-2018 YPK_2747 ef8a3111e7f5fac1f5a27c69a492ed33 206 Gene3D G3DSA:3.40.30.10 1 83 9.7E-35 T 12-10-2018 YPK_1554 143841f008159d86b1cf7af337aa625e 218 Gene3D G3DSA:1.10.150.240 18 80 1.7E-53 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPK_1554 143841f008159d86b1cf7af337aa625e 218 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 59 181 4.6E-15 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1554 143841f008159d86b1cf7af337aa625e 218 Gene3D G3DSA:3.40.50.1000 4 202 1.7E-53 T 12-10-2018 IPR023214 HAD superfamily YPK_1554 143841f008159d86b1cf7af337aa625e 218 SUPERFAMILY SSF56784 4 203 6.45E-46 T 12-10-2018 IPR036412 HAD-like superfamily YPK_1554 143841f008159d86b1cf7af337aa625e 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 1.2E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1554 143841f008159d86b1cf7af337aa625e 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 163 1.2E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1554 143841f008159d86b1cf7af337aa625e 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 95 108 1.2E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1554 143841f008159d86b1cf7af337aa625e 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 181 2.5E-22 T 12-10-2018 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 Pfam PF01278 Omptin family 32 311 1.8E-115 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 236 256 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 117 144 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 145 172 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 188 209 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 210 231 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 257 277 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 85 110 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 39 53 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PRINTS PR00482 Omptin serine protease signature 59 84 1.1E-68 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 Gene3D G3DSA:2.40.128.90 27 311 4.4E-98 T 12-10-2018 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 SUPERFAMILY SSF69917 31 311 2.01E-97 T 12-10-2018 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 YPK_2831 4ce9d817cae2d3e4b041c60edfb22ef9 311 PIRSF PIRSF001522 1 311 6.1E-126 T 12-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 YPK_2527 8a1a4d40453835ae4fea845babe61f03 382 Pfam PF00155 Aminotransferase class I and II 47 352 3.7E-62 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_2527 8a1a4d40453835ae4fea845babe61f03 382 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 356 55.424 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 YPK_2527 8a1a4d40453835ae4fea845babe61f03 382 Gene3D G3DSA:3.90.1150.10 10 348 9.3E-135 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2527 8a1a4d40453835ae4fea845babe61f03 382 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 212 221 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 YPK_2527 8a1a4d40453835ae4fea845babe61f03 382 SUPERFAMILY SSF53383 5 353 2.04E-81 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2527 8a1a4d40453835ae4fea845babe61f03 382 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 12 353 9.7E-122 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 YPK_2527 8a1a4d40453835ae4fea845babe61f03 382 Gene3D G3DSA:3.40.640.10 55 259 9.3E-135 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 SUPERFAMILY SSF52096 25 283 4.66E-87 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 38.356 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 Pfam PF01039 Carboxyl transferase domain 95 239 8.0E-18 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 3.7E-148 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 Gene3D G3DSA:3.90.226.10 25 287 5.3E-88 T 12-10-2018 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 1.6E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 1.6E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 1.6E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 1.6E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1531 b586b8e158e306f8946653dd7ec87b4a 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 1.6E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 YPK_1252 5602af9c8314e3f5c278315bafa28415 513 Pfam PF01464 Transglycosylase SLT domain 325 429 2.9E-23 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 YPK_1252 5602af9c8314e3f5c278315bafa28415 513 SMART SM00062 71 295 1.6E-37 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_1252 5602af9c8314e3f5c278315bafa28415 513 SUPERFAMILY SSF53955 317 478 2.55E-35 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_1252 5602af9c8314e3f5c278315bafa28415 513 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 32 502 49.47 T 12-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 YPK_1252 5602af9c8314e3f5c278315bafa28415 513 SUPERFAMILY SSF53850 72 294 4.66E-40 T 12-10-2018 YPK_1252 5602af9c8314e3f5c278315bafa28415 513 Gene3D G3DSA:3.40.190.10 156 251 1.4E-64 T 12-10-2018 YPK_1252 5602af9c8314e3f5c278315bafa28415 513 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 78 294 6.7E-35 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_1252 5602af9c8314e3f5c278315bafa28415 513 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 336 364 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YPK_1252 5602af9c8314e3f5c278315bafa28415 513 Gene3D G3DSA:1.10.530.10 312 495 1.5E-33 T 12-10-2018 YPK_1252 5602af9c8314e3f5c278315bafa28415 513 Gene3D G3DSA:3.40.190.10 65 290 1.4E-64 T 12-10-2018 YPK_1594 337db148571b0bea4698710324b42c43 319 Pfam PF00591 Glycosyl transferase family, a/b domain 94 316 3.5E-5 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_1594 337db148571b0bea4698710324b42c43 319 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 68 2.8E-9 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_1594 337db148571b0bea4698710324b42c43 319 SUPERFAMILY SSF47648 7 70 1.31E-13 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_1594 337db148571b0bea4698710324b42c43 319 SUPERFAMILY SSF52418 79 316 9.73E-45 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_1594 337db148571b0bea4698710324b42c43 319 Gene3D G3DSA:3.40.1030.10 73 319 9.5E-92 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 YPK_1594 337db148571b0bea4698710324b42c43 319 Gene3D G3DSA:1.20.970.10 1 72 2.5E-30 T 12-10-2018 YPK_2345 c65f6029bbd02cbde38e36d38d7afa78 479 Gene3D G3DSA:2.60.40.3940 379 479 1.7E-5 T 12-10-2018 YPK_2345 c65f6029bbd02cbde38e36d38d7afa78 479 Pfam PF12571 Phage tail-collar fibre protein 1 150 3.5E-62 T 12-10-2018 IPR022225 Phage tail fibre protein YPK_3943 d7dac67f89f352a77f4699f4dfed3703 543 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 1.0E-178 T 12-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 YPK_3943 d7dac67f89f352a77f4699f4dfed3703 543 SUPERFAMILY SSF56112 94 435 1.59E-45 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily YPK_3943 d7dac67f89f352a77f4699f4dfed3703 543 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 57.248 T 12-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 YPK_3943 d7dac67f89f352a77f4699f4dfed3703 543 Pfam PF03109 ABC1 family 113 231 4.4E-34 T 12-10-2018 IPR004147 UbiB domain YPK_0237 b1037e292ab288430f35a87a4a2b1b2c 432 Gene3D G3DSA:2.30.40.10 18 416 4.8E-180 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_0237 b1037e292ab288430f35a87a4a2b1b2c 432 SUPERFAMILY SSF51556 62 381 2.82E-106 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_0237 b1037e292ab288430f35a87a4a2b1b2c 432 SUPERFAMILY SSF51338 11 67 3.17E-6 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_0237 b1037e292ab288430f35a87a4a2b1b2c 432 Pfam PF07969 Amidohydrolase family 51 410 2.0E-53 T 12-10-2018 IPR013108 Amidohydrolase 3 YPK_0237 b1037e292ab288430f35a87a4a2b1b2c 432 Gene3D G3DSA:3.20.20.140 63 370 4.8E-180 T 12-10-2018 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 SUPERFAMILY SSF57716 217 268 3.99E-17 T 12-10-2018 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 269 1.4E-9 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 43.284 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 SMART SM00898 2 115 8.4E-54 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 2.5E-25 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 Gene3D G3DSA:3.20.190.10 2 128 3.8E-43 T 12-10-2018 IPR035937 MutM-like, N-terminal YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 2.6E-101 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 2.5E-30 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 SUPERFAMILY SSF81624 2 138 2.75E-43 T 12-10-2018 IPR035937 MutM-like, N-terminal YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 SMART SM01232 129 221 1.0E-47 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 12-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 Gene3D G3DSA:1.10.8.50 139 269 3.2E-46 T 12-10-2018 YPK_4152 7ccae4c6c6c2ed5f7e6fbaca8903dffe 269 SUPERFAMILY SSF46946 130 222 2.75E-29 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 Gene3D G3DSA:3.30.470.20 115 295 4.1E-121 T 12-10-2018 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 312 2.2E-138 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 184.14 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 6.8E-48 T 12-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 SUPERFAMILY SSF56059 123 313 2.59E-58 T 12-10-2018 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 Gene3D G3DSA:3.40.50.20 7 114 4.1E-121 T 12-10-2018 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 1.6E-80 T 12-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 Gene3D G3DSA:3.30.1490.20 137 201 4.1E-121 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_0838 f3ef8496c71ee6160f4bda59956c6220 319 SUPERFAMILY SSF52440 2 122 1.73E-47 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_3438 312328de8eb35b71dc240f5dbabd8b2f 66 SUPERFAMILY SSF54786 1 64 1.88E-11 T 12-10-2018 YPK_3438 312328de8eb35b71dc240f5dbabd8b2f 66 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 5 63 9.7E-13 T 12-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 YPK_3438 312328de8eb35b71dc240f5dbabd8b2f 66 Gene3D G3DSA:3.30.920.30 1 66 8.9E-20 T 12-10-2018 IPR038570 HicA superfamily YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 235 417 4.2E-25 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 PIRSF PIRSF000538 23 459 1.1E-43 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 Gene3D G3DSA:3.30.420.40 219 472 2.0E-95 T 12-10-2018 YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 Hamap MF_01535 Rhamnulokinase [rhaB]. 1 465 51.656 T 12-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 SUPERFAMILY SSF53067 22 227 3.43E-46 T 12-10-2018 YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 Gene3D G3DSA:3.30.420.40 1 218 3.7E-83 T 12-10-2018 YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 SUPERFAMILY SSF53067 230 448 8.85E-33 T 12-10-2018 YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 TIGRFAM TIGR02627 rhamnulo_kin: rhamnulokinase 1 442 3.3E-233 T 12-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 YPK_3845 a9f7c19a627ac2a5473697d4b41b50c4 472 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 35 225 6.5E-34 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 Gene3D G3DSA:1.10.10.10 6 91 5.1E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 Gene3D G3DSA:3.40.190.290 94 297 4.9E-60 T 12-10-2018 YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 SUPERFAMILY SSF46785 7 114 2.45E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 SUPERFAMILY SSF53850 92 299 6.52E-46 T 12-10-2018 YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.4E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.4E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.4E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 1.6E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2905 7d56ff2b452d4b69742d6c83554ac8f5 303 Pfam PF03466 LysR substrate binding domain 92 296 1.7E-42 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 SUPERFAMILY SSF46600 620 667 2.48E-12 T 12-10-2018 IPR036876 UVR domain superfamily YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Pfam PF00271 Helicase conserved C-terminal domain 439 544 3.7E-17 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 SMART SM00490 460 546 6.7E-20 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 SUPERFAMILY SSF52540 37 579 3.26E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 SUPERFAMILY SSF52540 4 415 5.33E-139 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 SMART SM00487 9 426 3.3E-29 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Pfam PF02151 UvrB/uvrC motif 632 666 1.5E-9 T 12-10-2018 IPR001943 UVR domain GO:0005515 YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Gene3D G3DSA:4.10.860.10 611 671 1.8E-21 T 12-10-2018 YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Gene3D G3DSA:3.40.50.300 415 596 2.2E-48 T 12-10-2018 YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Gene3D G3DSA:3.40.50.300 1 241 2.7E-75 T 12-10-2018 YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Gene3D G3DSA:3.40.50.300 275 414 3.0E-52 T 12-10-2018 YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Pfam PF12344 Ultra-violet resistance protein B 552 593 7.5E-20 T 12-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Pfam PF04851 Type III restriction enzyme, res subunit 15 92 3.7E-9 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 666 43.955 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 YPK_2926 f84396a663e609afaaa3ccc52ae18300 671 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 664 0.0 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 191 208 6.6E-47 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 213 234 6.6E-47 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 250 271 6.6E-47 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 300 315 6.6E-47 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 PRINTS PR00481 Cytosol aminopeptidase signature 272 292 6.6E-47 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 110 422 5.2E-105 T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 SUPERFAMILY SSF53187 108 427 1.07E-102 T 12-10-2018 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 Gene3D G3DSA:3.40.630.10 95 431 1.4E-106 T 12-10-2018 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 Pfam PF12404 Peptidase 6 82 1.2E-35 T 12-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 PIRSF PIRSF036388 2 432 1.7E-239 T 12-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 Hamap MF_00504 Peptidase B [pepB]. 4 428 70.354 T 12-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 YPK_1284 70436c150c72d158fe5696a0e0c50484 432 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 276 283 - T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 SMART SM00382 37 178 1.8E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 Gene3D G3DSA:3.30.300.150 512 640 1.0E-46 T 12-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 432 512 9.5E-22 T 12-10-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 Gene3D G3DSA:1.10.8.60 8 240 4.8E-104 T 12-10-2018 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 363 7.9E-33 T 12-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 Gene3D G3DSA:3.40.50.300 13 177 4.8E-104 T 12-10-2018 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.6E-42 T 12-10-2018 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 SUPERFAMILY SSF52540 35 222 2.14E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 9.4E-135 T 12-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 SUPERFAMILY SSF48019 243 367 1.87E-35 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 Gene3D G3DSA:1.20.272.10 242 363 5.9E-44 T 12-10-2018 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 514 655 1.5E-60 T 12-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.9E-5 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_3198 b29a77fde72dcfac5dfc690395ce4a37 658 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.9E-5 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0012 0a26af72d6d03f006ae30861e162b92f 154 SUPERFAMILY SSF49764 30 134 7.32E-20 T 12-10-2018 IPR008978 HSP20-like chaperone YPK_0012 0a26af72d6d03f006ae30861e162b92f 154 Pfam PF00011 Hsp20/alpha crystallin family 39 134 1.2E-16 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain YPK_0012 0a26af72d6d03f006ae30861e162b92f 154 Gene3D G3DSA:2.60.40.790 32 135 1.8E-21 T 12-10-2018 IPR008978 HSP20-like chaperone YPK_0012 0a26af72d6d03f006ae30861e162b92f 154 Hamap MF_02001 Small heat shock protein IbpB [ibpB]. 1 147 49.04 T 12-10-2018 IPR022848 Small heat shock protein IbpB YPK_4186 34f1750e957929126652fc795e24a794 294 Pfam PF03631 Virulence factor BrkB 29 276 1.7E-54 T 12-10-2018 IPR017039 Virulence factor BrkB YPK_4186 34f1750e957929126652fc795e24a794 294 PIRSF PIRSF035875 2 293 1.8E-61 T 12-10-2018 IPR017039 Virulence factor BrkB YPK_4186 34f1750e957929126652fc795e24a794 294 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 19 277 3.4E-91 T 12-10-2018 IPR017039 Virulence factor BrkB YPK_4186 34f1750e957929126652fc795e24a794 294 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 4 294 23.221 T 12-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial YPK_1737 2e2f226b589fd64d0a961680b3033fa5 336 SUPERFAMILY SSF51735 121 299 1.0E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1737 2e2f226b589fd64d0a961680b3033fa5 336 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 11 335 3.2E-150 T 12-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 YPK_1737 2e2f226b589fd64d0a961680b3033fa5 336 SUPERFAMILY SSF50129 11 149 1.08E-38 T 12-10-2018 IPR011032 GroES-like superfamily YPK_1737 2e2f226b589fd64d0a961680b3033fa5 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 38 114 8.7E-10 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YPK_1737 2e2f226b589fd64d0a961680b3033fa5 336 SMART SM00829 20 334 3.9E-57 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YPK_1737 2e2f226b589fd64d0a961680b3033fa5 336 Pfam PF00107 Zinc-binding dehydrogenase 161 285 1.9E-26 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YPK_1737 2e2f226b589fd64d0a961680b3033fa5 336 Gene3D G3DSA:3.90.180.10 24 334 8.4E-106 T 12-10-2018 YPK_1737 2e2f226b589fd64d0a961680b3033fa5 336 Gene3D G3DSA:3.40.50.720 130 273 8.4E-106 T 12-10-2018 YPK_3498 a5fcdf846efa77e019f9562c4638bcf0 154 Pfam PF07963 Prokaryotic N-terminal methylation motif 10 31 2.0E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_3498 a5fcdf846efa77e019f9562c4638bcf0 154 Gene3D G3DSA:3.30.700.10 13 150 1.3E-23 T 12-10-2018 YPK_3498 a5fcdf846efa77e019f9562c4638bcf0 154 SUPERFAMILY SSF54523 34 144 9.94E-23 T 12-10-2018 YPK_3498 a5fcdf846efa77e019f9562c4638bcf0 154 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 9.1E-10 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_3498 a5fcdf846efa77e019f9562c4638bcf0 154 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_2174 bfef616c97ec9d0bdc25d17637b95b2d 565 TIGRFAM TIGR00815 sulP: sulfate permease 18 558 6.5E-131 T 12-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 YPK_2174 bfef616c97ec9d0bdc25d17637b95b2d 565 Pfam PF00916 Sulfate permease family 29 414 2.6E-81 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 YPK_2174 bfef616c97ec9d0bdc25d17637b95b2d 565 SUPERFAMILY SSF52091 453 563 1.12E-12 T 12-10-2018 IPR036513 STAS domain superfamily YPK_2174 bfef616c97ec9d0bdc25d17637b95b2d 565 Pfam PF01740 STAS domain 456 558 2.7E-8 T 12-10-2018 IPR002645 STAS domain YPK_2174 bfef616c97ec9d0bdc25d17637b95b2d 565 Gene3D G3DSA:3.30.750.24 445 562 6.1E-22 T 12-10-2018 IPR036513 STAS domain superfamily YPK_2174 bfef616c97ec9d0bdc25d17637b95b2d 565 ProSitePatterns PS01130 SLC26A transporters signature. 58 79 - T 12-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 YPK_2260 14c2e69394fc6b650948b25f8bddf092 289 Gene3D G3DSA:3.20.20.140 15 289 2.7E-81 T 12-10-2018 YPK_2260 14c2e69394fc6b650948b25f8bddf092 289 Pfam PF04909 Amidohydrolase 27 289 3.0E-46 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YPK_2260 14c2e69394fc6b650948b25f8bddf092 289 SUPERFAMILY SSF51556 22 289 1.92E-77 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_2435 ec62b062abcbe2c8a285fc6e63443244 113 Pfam PF10709 Protein of unknown function (DUF2511) 25 111 4.0E-45 T 12-10-2018 IPR019648 Protein of unknown function DUF2511 YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Gene3D G3DSA:3.40.50.300 429 633 2.4E-47 T 12-10-2018 YPK_3547 38b7434124b1e6a4938bf6050754426d 968 SMART SM00490 517 601 4.9E-15 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Gene3D G3DSA:3.30.360.80 713 786 9.0E-32 T 12-10-2018 YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Pfam PF12137 RNA polymerase recycling family C-terminal 605 965 8.4E-156 T 12-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Pfam PF00271 Helicase conserved C-terminal domain 492 601 3.1E-14 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Gene3D G3DSA:2.30.30.930 55 114 3.3E-28 T 12-10-2018 YPK_3547 38b7434124b1e6a4938bf6050754426d 968 SMART SM00487 150 342 2.3E-21 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Gene3D G3DSA:2.30.30.140 1 53 3.4E-23 T 12-10-2018 YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Pfam PF00176 SNF2 family N-terminal domain 174 441 2.9E-19 T 12-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 YPK_3547 38b7434124b1e6a4938bf6050754426d 968 SUPERFAMILY SSF52540 125 377 2.48E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3547 38b7434124b1e6a4938bf6050754426d 968 SUPERFAMILY SSF52540 273 644 1.11E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 966 28.971 T 12-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 YPK_3547 38b7434124b1e6a4938bf6050754426d 968 Gene3D G3DSA:3.40.50.10810 150 428 2.6E-109 T 12-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily YPK_0707 fd60ab7fa4a82b95b2db792517e4583d 137 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 56 130 6.6E-26 T 12-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_0707 fd60ab7fa4a82b95b2db792517e4583d 137 Gene3D G3DSA:2.30.330.10 44 135 2.6E-24 T 12-10-2018 IPR036429 SpoA-like superfamily YPK_0707 fd60ab7fa4a82b95b2db792517e4583d 137 SUPERFAMILY SSF101801 56 131 2.88E-19 T 12-10-2018 IPR036429 SpoA-like superfamily YPK_0707 fd60ab7fa4a82b95b2db792517e4583d 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 58 74 2.0E-16 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YPK_0707 fd60ab7fa4a82b95b2db792517e4583d 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 75 91 2.0E-16 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YPK_0707 fd60ab7fa4a82b95b2db792517e4583d 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 104 119 2.0E-16 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YPK_0707 fd60ab7fa4a82b95b2db792517e4583d 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 91 104 2.0E-16 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YPK_0707 fd60ab7fa4a82b95b2db792517e4583d 137 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 59 127 1.9E-19 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) YPK_1603 b1cfc02a63b8cb6291c0ebd5c698d28c 258 Pfam PF13649 Methyltransferase domain 36 124 1.4E-13 T 12-10-2018 YPK_1603 b1cfc02a63b8cb6291c0ebd5c698d28c 258 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 257 43.271 T 12-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 YPK_1603 b1cfc02a63b8cb6291c0ebd5c698d28c 258 Gene3D G3DSA:1.10.150.290 132 237 5.8E-86 T 12-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 YPK_1603 b1cfc02a63b8cb6291c0ebd5c698d28c 258 Gene3D G3DSA:3.40.50.150 9 254 5.8E-86 T 12-10-2018 YPK_1603 b1cfc02a63b8cb6291c0ebd5c698d28c 258 SUPERFAMILY SSF53335 6 210 1.53E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2738 232a916130d0ffa02510ea202116d3c6 254 SUPERFAMILY SSF100950 76 235 1.57E-24 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_2738 232a916130d0ffa02510ea202116d3c6 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YPK_2738 232a916130d0ffa02510ea202116d3c6 254 SMART SM01134 75 236 4.0E-63 T 12-10-2018 YPK_2738 232a916130d0ffa02510ea202116d3c6 254 Pfam PF08220 DeoR-like helix-turn-helix domain 8 57 6.9E-11 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2738 232a916130d0ffa02510ea202116d3c6 254 Pfam PF00455 DeoR C terminal sensor domain 77 235 1.2E-47 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain YPK_2738 232a916130d0ffa02510ea202116d3c6 254 SMART SM00420 8 57 6.2E-9 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0018 27090a233f37ed9bd9a61d71d5c8751f 214 Gene3D G3DSA:1.10.10.10 12 115 7.6E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0018 27090a233f37ed9bd9a61d71d5c8751f 214 SUPERFAMILY SSF46785 16 194 1.11E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1504 6f129f2bd99d944674199ad61323c2ed 408 Gene3D G3DSA:1.25.40.10 152 293 2.7E-17 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1504 6f129f2bd99d944674199ad61323c2ed 408 Pfam PF14559 Tetratricopeptide repeat 178 242 9.5E-11 T 12-10-2018 YPK_1504 6f129f2bd99d944674199ad61323c2ed 408 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 112 1.2E-30 T 12-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI YPK_1504 6f129f2bd99d944674199ad61323c2ed 408 SUPERFAMILY SSF48452 162 268 9.87E-17 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_0346 987fcb341d4faabb33c9be90e6187b06 224 Pfam PF02581 Thiamine monophosphate synthase 30 198 8.5E-55 T 12-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YPK_0346 987fcb341d4faabb33c9be90e6187b06 224 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 5 216 19.947 T 12-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YPK_0346 987fcb341d4faabb33c9be90e6187b06 224 SUPERFAMILY SSF51391 14 216 2.88E-63 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YPK_0346 987fcb341d4faabb33c9be90e6187b06 224 Gene3D G3DSA:3.20.20.70 15 218 1.4E-60 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0346 987fcb341d4faabb33c9be90e6187b06 224 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 31 211 2.9E-56 T 12-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 795 4.8E-282 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF07244 Surface antigen variable number repeat 348 421 9.7E-14 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF07244 Surface antigen variable number repeat 92 172 3.2E-11 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF07244 Surface antigen variable number repeat 267 344 6.1E-12 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF07244 Surface antigen variable number repeat 176 263 2.4E-15 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 347 425 3.1E-25 T 12-10-2018 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 PIRSF PIRSF006076 1 795 1.2E-251 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 92 174 5.7E-16 T 12-10-2018 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 265 346 3.0E-16 T 12-10-2018 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 795 25.905 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Pfam PF01103 Surface antigen 448 795 5.5E-100 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 19 91 2.3E-20 T 12-10-2018 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:2.40.160.50 426 795 1.3E-141 T 12-10-2018 YPK_1074 f8b6c09000e8ed815ff56d6c04540b8a 795 Gene3D G3DSA:3.10.20.310 175 264 1.7E-23 T 12-10-2018 YPK_1512 4ddd1f0be973fb56fd52a93bac915c8c 203 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 28 201 39.916 T 12-10-2018 IPR022990 Uncharacterised protein family UPF0115 YPK_1512 4ddd1f0be973fb56fd52a93bac915c8c 203 SUPERFAMILY SSF160443 122 177 1.57E-9 T 12-10-2018 IPR036063 Smr domain superfamily YPK_1512 4ddd1f0be973fb56fd52a93bac915c8c 203 Pfam PF01713 Smr domain 125 197 1.7E-17 T 12-10-2018 IPR002625 Smr domain YPK_1512 4ddd1f0be973fb56fd52a93bac915c8c 203 SMART SM00463 122 200 5.1E-18 T 12-10-2018 IPR002625 Smr domain YPK_1512 4ddd1f0be973fb56fd52a93bac915c8c 203 Gene3D G3DSA:3.30.1370.110 77 203 1.3E-28 T 12-10-2018 YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 26 516 7.5E-186 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 SUPERFAMILY SSF69255 382 471 5.49E-25 T 12-10-2018 YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 Gene3D G3DSA:3.55.50.10 112 208 8.8E-56 T 12-10-2018 YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 Pfam PF05954 Phage late control gene D protein (GPD) 34 355 1.3E-62 T 12-10-2018 YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 Gene3D G3DSA:2.40.50.230 388 471 7.6E-34 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 490 592 6.9E-35 T 12-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 SUPERFAMILY SSF69279 22 203 1.19E-46 T 12-10-2018 YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 611 751 7.8E-51 T 12-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 22 515 1.4E-72 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 Gene3D G3DSA:3.30.1920.30 241 312 8.8E-56 T 12-10-2018 YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 Gene3D G3DSA:2.30.110.50 28 353 8.8E-56 T 12-10-2018 YPK_0805 9da8fd5efecc1318a0b3d91cb3fa69d6 782 SUPERFAMILY SSF69279 204 383 3.23E-50 T 12-10-2018 YPK_0673 c27dd01af2e637cfdf41f744e95e01e0 143 Gene3D G3DSA:3.30.420.270 63 132 1.9E-28 T 12-10-2018 YPK_0673 c27dd01af2e637cfdf41f744e95e01e0 143 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 133 1.3E-29 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 YPK_0673 c27dd01af2e637cfdf41f744e95e01e0 143 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 16 136 1.7E-64 T 12-10-2018 IPR014170 TonB system transport protein ExbD type-1 GO:0016020|GO:0055085 YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 Gene3D G3DSA:3.40.50.970 351 553 4.7E-62 T 12-10-2018 YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 326 3.4E-40 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 Gene3D G3DSA:3.40.50.970 1 176 4.3E-68 T 12-10-2018 YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 SUPERFAMILY SSF52467 186 350 6.73E-54 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 553 4.8E-196 T 12-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 419 438 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 SUPERFAMILY SSF52518 1 177 5.89E-60 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 Gene3D G3DSA:3.40.50.1220 186 349 1.8E-52 T 12-10-2018 YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 SUPERFAMILY SSF52518 357 552 2.08E-65 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 3.3E-59 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YPK_1950 a06dfe1a514ca2e062f17db1663561c5 555 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 382 530 5.3E-48 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YPK_1928 c3b6070f97d5738957901513432f8ddc 278 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 79 84 - T 12-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 YPK_1928 c3b6070f97d5738957901513432f8ddc 278 Gene3D G3DSA:2.40.10.10 38 241 4.0E-30 T 12-10-2018 YPK_1928 c3b6070f97d5738957901513432f8ddc 278 Gene3D G3DSA:2.40.10.10 53 160 4.0E-30 T 12-10-2018 YPK_1928 c3b6070f97d5738957901513432f8ddc 278 SUPERFAMILY SSF50494 33 269 1.07E-31 T 12-10-2018 IPR009003 Peptidase S1, PA clan YPK_1928 c3b6070f97d5738957901513432f8ddc 278 Pfam PF00089 Trypsin 47 243 9.6E-13 T 12-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 YPK_1928 c3b6070f97d5738957901513432f8ddc 278 SMART SM00020 43 273 0.0043 T 12-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 YPK_1928 c3b6070f97d5738957901513432f8ddc 278 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 216 227 - T 12-10-2018 IPR033116 Serine proteases, trypsin family, serine active site YPK_1928 c3b6070f97d5738957901513432f8ddc 278 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 215 227 1.1E-6 T 12-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 YPK_1928 c3b6070f97d5738957901513432f8ddc 278 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 139 153 1.1E-6 T 12-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 YPK_1928 c3b6070f97d5738957901513432f8ddc 278 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 69 84 1.1E-6 T 12-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 Gene3D G3DSA:3.60.120.10 2 521 3.3E-197 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 Pfam PF04715 Anthranilate synthase component I, N terminal region 20 192 8.1E-16 T 12-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 PRINTS PR00095 Anthranilate synthase component I signature 365 378 1.3E-24 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 PRINTS PR00095 Anthranilate synthase component I signature 460 474 1.3E-24 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 PRINTS PR00095 Anthranilate synthase component I signature 351 364 1.3E-24 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 PRINTS PR00095 Anthranilate synthase component I signature 445 459 1.3E-24 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 PIRSF PIRSF001373 1 521 6.0E-250 T 12-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 18 516 1.4E-241 T 12-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 SUPERFAMILY SSF56322 9 516 2.75E-165 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_2042 8ebb21760318a9c97ac35ecdd077c17c 521 Pfam PF00425 chorismate binding enzyme 243 503 6.3E-85 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 SUPERFAMILY SSF52540 72 372 3.89E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 Gene3D G3DSA:3.30.1360.120 1 121 6.3E-38 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 Gene3D G3DSA:3.40.50.300 217 382 8.9E-104 T 12-10-2018 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 Pfam PF12631 MnmE helical domain 123 451 2.2E-60 T 12-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 370 1.3E-22 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 33.217 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 6.3E-34 T 12-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 Pfam PF01926 50S ribosome-binding GTPase 218 308 2.0E-24 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 4.9E-100 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 SUPERFAMILY SSF116878 121 454 2.35E-51 T 12-10-2018 YPK_4245 ceaadb46c3f4def4637076d8e85d62d6 454 Gene3D G3DSA:1.20.120.430 122 454 8.9E-104 T 12-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 YPK_2130 57aaf45263bd80fd64b001136616618c 109 Hamap MF_01597 Spermidine export protein MdtI [mdtI]. 1 109 29.75 T 12-10-2018 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 YPK_2130 57aaf45263bd80fd64b001136616618c 109 SUPERFAMILY SSF103481 11 108 9.42E-18 T 12-10-2018 YPK_2130 57aaf45263bd80fd64b001136616618c 109 Gene3D G3DSA:1.10.3730.20 8 109 4.3E-28 T 12-10-2018 YPK_2130 57aaf45263bd80fd64b001136616618c 109 Pfam PF00893 Small Multidrug Resistance protein 11 99 3.6E-27 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 YPK_0423 6609289849be6f00352eee7fe4209a1e 264 SUPERFAMILY SSF161098 56 237 2.09E-36 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0423 6609289849be6f00352eee7fe4209a1e 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 247 1.4E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0423 6609289849be6f00352eee7fe4209a1e 264 Gene3D G3DSA:1.10.3720.10 55 247 2.1E-28 T 12-10-2018 IPR035906 MetI-like superfamily YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 Gene3D G3DSA:1.10.40.30 363 433 1.4E-148 T 12-10-2018 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 4.3E-23 T 12-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 9.2E-211 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 Gene3D G3DSA:1.10.275.10 1 107 1.1E-36 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 Pfam PF00206 Lyase 6 301 8.0E-97 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 41.111 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.2E-67 T 12-10-2018 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.2E-67 T 12-10-2018 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.2E-67 T 12-10-2018 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.2E-67 T 12-10-2018 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.2E-67 T 12-10-2018 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.2E-67 T 12-10-2018 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 Gene3D G3DSA:1.20.200.10 108 446 1.4E-148 T 12-10-2018 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 2.7E-28 T 12-10-2018 IPR000362 Fumarate lyase family YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 2.7E-28 T 12-10-2018 IPR000362 Fumarate lyase family YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.7E-28 T 12-10-2018 IPR000362 Fumarate lyase family YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.7E-28 T 12-10-2018 IPR000362 Fumarate lyase family YPK_4087 0e4473d88d7ca7dc14fd737f4abfe355 457 SUPERFAMILY SSF48557 3 456 2.98E-141 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 YPK_0308 80c7012d85026492b38fec236787e651 329 Gene3D G3DSA:3.30.1360.10 17 228 2.8E-86 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 SMART SM00662 23 234 8.0E-106 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 3.9E-113 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 SUPERFAMILY SSF55257 6 231 1.57E-30 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 12-10-2018 YPK_0308 80c7012d85026492b38fec236787e651 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.3E-23 T 12-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 3.9E-24 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 Gene3D G3DSA:2.170.120.12 53 177 2.8E-86 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 Gene3D G3DSA:1.10.150.20 244 329 9.7E-39 T 12-10-2018 YPK_0308 80c7012d85026492b38fec236787e651 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.661 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0308 80c7012d85026492b38fec236787e651 329 SUPERFAMILY SSF56553 53 178 1.17E-41 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_3011 507e4f76eb580bf802ea0467cf5ab59e 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 24 131 4.6E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_3011 507e4f76eb580bf802ea0467cf5ab59e 246 SUPERFAMILY SSF161098 24 223 7.85E-37 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3011 507e4f76eb580bf802ea0467cf5ab59e 246 Gene3D G3DSA:1.10.3720.10 18 238 2.3E-43 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3011 507e4f76eb580bf802ea0467cf5ab59e 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 237 5.7E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 SUPERFAMILY SSF52096 38 333 3.77E-64 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 SUPERFAMILY SSF48179 669 760 2.64E-25 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 526 619 6.0E-25 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 670 756 3.2E-5 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 Gene3D G3DSA:1.10.1040.50 529 755 1.2E-64 T 12-10-2018 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 Gene3D G3DSA:3.40.50.720 343 528 2.8E-60 T 12-10-2018 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 345 523 1.5E-56 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 35 760 54.526 T 12-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 523 548 - T 12-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 SUPERFAMILY SSF48179 526 625 1.79E-29 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 Pfam PF00378 Enoyl-CoA hydratase/isomerase 52 237 1.7E-40 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 40 760 0.0 T 12-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 Gene3D G3DSA:3.90.226.10 37 339 8.5E-95 T 12-10-2018 YPK_1509 219a47fb0586774cbe204ab3b67547b6 774 SUPERFAMILY SSF51735 342 523 1.92E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0974 5e9ccd7e2bbd740b9690b1c3424aad9a 103 SUPERFAMILY SSF55604 27 98 6.02E-21 T 12-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YPK_0974 5e9ccd7e2bbd740b9690b1c3424aad9a 103 Gene3D G3DSA:3.30.1360.60 22 102 1.5E-27 T 12-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YPK_0974 5e9ccd7e2bbd740b9690b1c3424aad9a 103 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 23 86 5.2E-18 T 12-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 YPK_0974 5e9ccd7e2bbd740b9690b1c3424aad9a 103 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 40 57 - T 12-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YPK_0974 5e9ccd7e2bbd740b9690b1c3424aad9a 103 Pfam PF00367 phosphotransferase system, EIIB 31 62 3.6E-15 T 12-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YPK_2844 593db255713e21a37f53d2922c87aa58 957 Gene3D G3DSA:3.30.565.10 545 706 4.6E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2844 593db255713e21a37f53d2922c87aa58 957 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 700 5.4E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2844 593db255713e21a37f53d2922c87aa58 957 SMART SM00387 591 702 9.2E-36 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2844 593db255713e21a37f53d2922c87aa58 957 Pfam PF00072 Response regulator receiver domain 837 946 3.0E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2844 593db255713e21a37f53d2922c87aa58 957 SUPERFAMILY SSF47384 463 545 2.94E-19 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_2844 593db255713e21a37f53d2922c87aa58 957 Gene3D G3DSA:3.40.50.2300 830 957 8.1E-39 T 12-10-2018 YPK_2844 593db255713e21a37f53d2922c87aa58 957 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 719 808 2.7E-32 T 12-10-2018 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 YPK_2844 593db255713e21a37f53d2922c87aa58 957 SUPERFAMILY SSF52172 712 825 8.45E-40 T 12-10-2018 IPR011006 CheY-like superfamily YPK_2844 593db255713e21a37f53d2922c87aa58 957 SMART SM00388 479 544 3.3E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_2844 593db255713e21a37f53d2922c87aa58 957 Pfam PF00512 His Kinase A (phospho-acceptor) domain 479 543 9.6E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_2844 593db255713e21a37f53d2922c87aa58 957 Gene3D G3DSA:1.10.287.130 456 542 1.4E-22 T 12-10-2018 YPK_2844 593db255713e21a37f53d2922c87aa58 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 645 655 5.8E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2844 593db255713e21a37f53d2922c87aa58 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 686 699 5.8E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2844 593db255713e21a37f53d2922c87aa58 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 662 680 5.8E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2844 593db255713e21a37f53d2922c87aa58 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 641 5.8E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_2844 593db255713e21a37f53d2922c87aa58 957 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 32 951 27.887 T 12-10-2018 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021 YPK_2844 593db255713e21a37f53d2922c87aa58 957 SUPERFAMILY SSF55874 533 704 1.96E-45 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2844 593db255713e21a37f53d2922c87aa58 957 Gene3D G3DSA:3.40.50.10970 717 829 1.3E-9 T 12-10-2018 IPR038388 RcsC, C-terminal domain superfamily YPK_2844 593db255713e21a37f53d2922c87aa58 957 SMART SM00448 835 946 3.1E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2844 593db255713e21a37f53d2922c87aa58 957 SUPERFAMILY SSF52172 835 952 4.98E-38 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3102 35bd76bf26a96953ad5878741c09c32e 240 SMART SM00530 17 76 1.1E-8 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_3102 35bd76bf26a96953ad5878741c09c32e 240 Pfam PF00717 Peptidase S24-like 145 220 5.7E-13 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C YPK_3102 35bd76bf26a96953ad5878741c09c32e 240 Gene3D G3DSA:1.10.260.40 1 90 8.7E-35 T 12-10-2018 YPK_3102 35bd76bf26a96953ad5878741c09c32e 240 SUPERFAMILY SSF47413 4 90 2.95E-21 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_3102 35bd76bf26a96953ad5878741c09c32e 240 Gene3D G3DSA:2.10.109.10 101 240 9.4E-48 T 12-10-2018 YPK_3102 35bd76bf26a96953ad5878741c09c32e 240 SUPERFAMILY SSF51306 138 235 2.62E-24 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily YPK_3102 35bd76bf26a96953ad5878741c09c32e 240 Pfam PF01381 Helix-turn-helix 27 76 2.1E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_0561 26325386a8594665035de64365e1a352 997 Gene3D G3DSA:2.160.20.20 27 483 1.3E-41 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_0561 26325386a8594665035de64365e1a352 997 Pfam PF03212 Pertactin 363 479 3.3E-6 T 12-10-2018 IPR004899 Pertactin, central region YPK_0561 26325386a8594665035de64365e1a352 997 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 373 502 1.1E-23 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_0561 26325386a8594665035de64365e1a352 997 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 599 997 4.3E-67 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_0561 26325386a8594665035de64365e1a352 997 SUPERFAMILY SSF103515 689 997 6.54E-39 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0561 26325386a8594665035de64365e1a352 997 Pfam PF03797 Autotransporter beta-domain 726 975 1.6E-37 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0561 26325386a8594665035de64365e1a352 997 SUPERFAMILY SSF51126 23 480 5.34E-46 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_0561 26325386a8594665035de64365e1a352 997 Gene3D G3DSA:2.40.128.130 682 997 1.9E-74 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0561 26325386a8594665035de64365e1a352 997 SMART SM00869 723 986 1.0E-32 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_2649 9655837774a34126653bce639605a778 360 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 312 328 - T 12-10-2018 IPR013793 Porin, Gram-negative type, conserved site YPK_2649 9655837774a34126653bce639605a778 360 SUPERFAMILY SSF56935 23 360 4.35E-83 T 12-10-2018 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 155 166 2.3E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 2.3E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 98 108 2.3E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 312 329 2.3E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 230 242 2.3E-15 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 Gene3D G3DSA:2.40.160.10 23 360 7.9E-149 T 12-10-2018 IPR023614 Porin domain superfamily YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 236 253 9.6E-70 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 267 286 9.6E-70 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 9.6E-70 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 98 120 9.6E-70 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 9.6E-70 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 153 175 9.6E-70 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2649 9655837774a34126653bce639605a778 360 Pfam PF00267 Gram-negative porin 28 360 9.9E-143 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_1091 708bb943b928b2d0661c082bbac24892 572 Gene3D G3DSA:3.30.930.10 11 465 2.4E-241 T 12-10-2018 YPK_1091 708bb943b928b2d0661c082bbac24892 572 Gene3D G3DSA:3.40.50.800 4 554 2.4E-241 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily YPK_1091 708bb943b928b2d0661c082bbac24892 572 SUPERFAMILY SSF55681 10 478 6.93E-107 T 12-10-2018 YPK_1091 708bb943b928b2d0661c082bbac24892 572 SUPERFAMILY SSF55826 218 390 9.03E-31 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 YPK_1091 708bb943b928b2d0661c082bbac24892 572 Gene3D G3DSA:3.90.960.10 240 389 2.4E-241 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 YPK_1091 708bb943b928b2d0661c082bbac24892 572 Pfam PF03129 Anticodon binding domain 475 568 8.6E-21 T 12-10-2018 IPR004154 Anticodon-binding YPK_1091 708bb943b928b2d0661c082bbac24892 572 SUPERFAMILY SSF52954 462 571 5.74E-33 T 12-10-2018 YPK_1091 708bb943b928b2d0661c082bbac24892 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 42.879 T 12-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 YPK_1091 708bb943b928b2d0661c082bbac24892 572 PIRSF PIRSF001535 1 572 1.4E-275 T 12-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 YPK_1091 708bb943b928b2d0661c082bbac24892 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 1.3E-49 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_1091 708bb943b928b2d0661c082bbac24892 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 377 2.5E-25 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 YPK_1091 708bb943b928b2d0661c082bbac24892 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 568 2.7E-272 T 12-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 YPK_1091 708bb943b928b2d0661c082bbac24892 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.9E-19 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 YPK_1091 708bb943b928b2d0661c082bbac24892 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.9E-19 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 YPK_1091 708bb943b928b2d0661c082bbac24892 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.9E-19 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 YPK_1091 708bb943b928b2d0661c082bbac24892 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.9E-19 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 YPK_3685 d32e8c335cbcaa0909c41e775bef9634 152 SUPERFAMILY SSF51197 1 151 2.0E-44 T 12-10-2018 YPK_3685 d32e8c335cbcaa0909c41e775bef9634 152 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 4.8E-52 T 12-10-2018 IPR004375 YhcH/YjgK/YiaL family YPK_3685 d32e8c335cbcaa0909c41e775bef9634 152 Gene3D G3DSA:2.60.120.370 1 152 3.1E-41 T 12-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily YPK_3685 d32e8c335cbcaa0909c41e775bef9634 152 Pfam PF04074 Domain of unknown function (DUF386) 1 149 6.6E-45 T 12-10-2018 IPR004375 YhcH/YjgK/YiaL family YPK_2543 135d73e14e75d1ff37d00e2cb87cfee8 272 SMART SM00382 40 227 5.4E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2543 135d73e14e75d1ff37d00e2cb87cfee8 272 Pfam PF00005 ABC transporter 32 179 6.7E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2543 135d73e14e75d1ff37d00e2cb87cfee8 272 SUPERFAMILY SSF52540 14 241 5.21E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2543 135d73e14e75d1ff37d00e2cb87cfee8 272 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2543 135d73e14e75d1ff37d00e2cb87cfee8 272 Gene3D G3DSA:3.40.50.300 15 268 2.5E-62 T 12-10-2018 YPK_1125 27f12eaac09e1227b64e644a5685fd63 525 PIRSF PIRSF002741 30 517 1.8E-74 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YPK_1125 27f12eaac09e1227b64e644a5685fd63 525 Gene3D G3DSA:3.40.190.10 42 508 8.9E-182 T 12-10-2018 YPK_1125 27f12eaac09e1227b64e644a5685fd63 525 Gene3D G3DSA:3.10.105.10 250 496 8.9E-182 T 12-10-2018 YPK_1125 27f12eaac09e1227b64e644a5685fd63 525 SUPERFAMILY SSF53850 29 505 9.41E-97 T 12-10-2018 YPK_1125 27f12eaac09e1227b64e644a5685fd63 525 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 427 5.9E-81 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 504 2.0E-228 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Gene3D G3DSA:2.40.50.140 15 154 5.6E-42 T 12-10-2018 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PIRSF PIRSF039101 1 505 1.1E-198 T 12-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 505 45.105 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 6.8E-83 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 1.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 1.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 1.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 1.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 1.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 2.5E-15 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 SUPERFAMILY SSF50249 13 155 1.52E-45 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 Gene3D G3DSA:3.30.930.10 155 499 4.7E-135 T 12-10-2018 YPK_0924 2eb0b668ab57d3d6b1fe98f46b2a3a99 505 SUPERFAMILY SSF55681 162 502 3.06E-123 T 12-10-2018 YPK_0502 a244dc774694a26f5d2637ed2bd321f3 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 40.858 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 YPK_0502 a244dc774694a26f5d2637ed2bd321f3 284 SUPERFAMILY SSF52540 2 151 3.19E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0502 a244dc774694a26f5d2637ed2bd321f3 284 Pfam PF03668 P-loop ATPase protein family 1 282 6.1E-144 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 YPK_0502 a244dc774694a26f5d2637ed2bd321f3 284 PIRSF PIRSF005052 1 284 5.7E-114 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 YPK_1379 fbbe62fb7734695f8743698c182d800d 391 Gene3D G3DSA:3.20.20.70 1 365 2.3E-116 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1379 fbbe62fb7734695f8743698c182d800d 391 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 2 363 1.1E-149 T 12-10-2018 YPK_1379 fbbe62fb7734695f8743698c182d800d 391 Pfam PF13353 4Fe-4S single cluster domain 11 117 5.8E-5 T 12-10-2018 YPK_1379 fbbe62fb7734695f8743698c182d800d 391 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 158 378 1.0E-14 T 12-10-2018 YPK_1379 fbbe62fb7734695f8743698c182d800d 391 Pfam PF04055 Radical SAM superfamily 10 172 4.7E-13 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_1379 fbbe62fb7734695f8743698c182d800d 391 SUPERFAMILY SSF102114 9 327 1.31E-47 T 12-10-2018 YPK_1379 fbbe62fb7734695f8743698c182d800d 391 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 264 344 1.4E-17 T 12-10-2018 IPR023885 4Fe4S-binding SPASM domain YPK_4128 8a54c7f4d0bf68ace765fe08a53f3c83 40 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 2 40 4.4E-6 T 12-10-2018 IPR025161 Putative transposase IS4/IS5 family YPK_4084 8a5f8505a63f626aa528041222796ad8 602 Pfam PF00664 ABC transporter transmembrane region 30 287 3.7E-8 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_4084 8a5f8505a63f626aa528041222796ad8 602 Pfam PF00005 ABC transporter 353 500 1.6E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_4084 8a5f8505a63f626aa528041222796ad8 602 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_4084 8a5f8505a63f626aa528041222796ad8 602 SMART SM00382 362 548 2.7E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4084 8a5f8505a63f626aa528041222796ad8 602 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 21 561 4.9E-225 T 12-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 YPK_4084 8a5f8505a63f626aa528041222796ad8 602 SUPERFAMILY SSF52540 326 558 2.81E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4084 8a5f8505a63f626aa528041222796ad8 602 Gene3D G3DSA:1.20.1560.10 14 322 1.7E-33 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_4084 8a5f8505a63f626aa528041222796ad8 602 Gene3D G3DSA:3.40.50.300 330 566 1.1E-63 T 12-10-2018 YPK_4084 8a5f8505a63f626aa528041222796ad8 602 SUPERFAMILY SSF90123 16 324 1.11E-42 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_3524 646ca88d4c469fd95c79ece0e8cab0f0 587 Gene3D G3DSA:3.30.450.330 236 549 6.3E-111 T 12-10-2018 YPK_3524 646ca88d4c469fd95c79ece0e8cab0f0 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 259 553 1.5E-80 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YPK_3524 646ca88d4c469fd95c79ece0e8cab0f0 587 Gene3D G3DSA:3.40.710.10 295 475 6.3E-111 T 12-10-2018 YPK_3524 646ca88d4c469fd95c79ece0e8cab0f0 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 219 2.5E-18 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 YPK_3524 646ca88d4c469fd95c79ece0e8cab0f0 587 Gene3D G3DSA:3.90.1310.30 58 234 3.9E-44 T 12-10-2018 YPK_3524 646ca88d4c469fd95c79ece0e8cab0f0 587 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 18 569 46.149 T 12-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 YPK_3524 646ca88d4c469fd95c79ece0e8cab0f0 587 SUPERFAMILY SSF56519 62 233 4.97E-45 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 YPK_3524 646ca88d4c469fd95c79ece0e8cab0f0 587 SUPERFAMILY SSF56601 234 562 1.18E-85 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_3910 28390107213d670be2816eab32bb42c4 243 Gene3D G3DSA:3.30.300.30 98 193 8.3E-33 T 12-10-2018 YPK_3910 28390107213d670be2816eab32bb42c4 243 Pfam PF01514 Secretory protein of YscJ/FliF family 7 191 1.2E-28 T 12-10-2018 IPR006182 Secretory protein YscJ/FliF YPK_3910 28390107213d670be2816eab32bb42c4 243 Gene3D G3DSA:3.30.70.1530 21 91 2.6E-26 T 12-10-2018 YPK_3910 28390107213d670be2816eab32bb42c4 243 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 5 192 2.0E-74 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YPK_3910 28390107213d670be2816eab32bb42c4 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 77 90 4.1E-18 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YPK_3910 28390107213d670be2816eab32bb42c4 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 97 112 4.1E-18 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YPK_3910 28390107213d670be2816eab32bb42c4 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 164 176 4.1E-18 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YPK_3910 28390107213d670be2816eab32bb42c4 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 25 35 4.1E-18 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YPK_3910 28390107213d670be2816eab32bb42c4 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 117 130 4.1E-18 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 YPK_2721 f7a72c147559f63dbf34bd7e2803f270 308 Pfam PF01145 SPFH domain / Band 7 family 35 210 6.3E-25 T 12-10-2018 IPR001107 Band 7 domain YPK_2721 f7a72c147559f63dbf34bd7e2803f270 308 SMART SM00244 31 194 0.003 T 12-10-2018 IPR001107 Band 7 domain YPK_2721 f7a72c147559f63dbf34bd7e2803f270 308 SUPERFAMILY SSF117892 62 198 1.31E-13 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily YPK_2721 f7a72c147559f63dbf34bd7e2803f270 308 Gene3D G3DSA:3.30.479.30 59 196 1.1E-6 T 12-10-2018 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 12-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 Gene3D G3DSA:3.10.20.70 2 104 1.0E-41 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 2.4E-137 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 12-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 SMART SM01230 102 379 1.4E-148 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 7.0E-32 T 12-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 SUPERFAMILY SSF54368 3 100 1.19E-36 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 Gene3D G3DSA:3.30.590.10 105 457 1.8E-149 T 12-10-2018 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 3.7E-215 T 12-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 SUPERFAMILY SSF55931 102 468 7.65E-138 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 YPK_4189 3ef70901c361257cfd740054cf84ed61 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 SUPERFAMILY SSF52343 116 245 2.36E-30 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_2702 cc76fba632ee557a0b75d966750a6286 340 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 291 299 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 Gene3D G3DSA:3.10.20.30 256 340 2.0E-20 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_2702 cc76fba632ee557a0b75d966750a6286 340 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 266 332 8.3E-13 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 SUPERFAMILY SSF54292 234 338 4.98E-24 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 Gene3D G3DSA:2.40.30.10 15 108 4.5E-19 T 12-10-2018 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 Pfam PF00970 Oxidoreductase FAD-binding domain 39 110 2.7E-8 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 Gene3D G3DSA:3.40.50.80 111 252 3.6E-27 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_2702 cc76fba632ee557a0b75d966750a6286 340 PRINTS PR00406 Cytochrome B5 reductase signature 61 68 3.2E-7 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 PRINTS PR00406 Cytochrome B5 reductase signature 212 220 3.2E-7 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 PRINTS PR00406 Cytochrome B5 reductase signature 121 140 3.2E-7 T 12-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 YPK_2702 cc76fba632ee557a0b75d966750a6286 340 SUPERFAMILY SSF63380 17 111 2.04E-21 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_2702 cc76fba632ee557a0b75d966750a6286 340 Pfam PF00175 Oxidoreductase NAD-binding domain 122 225 4.7E-16 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YPK_0953 de28b6f0b281a5505384f3e0cf05bdd3 65 Pfam PF14206 Cysteine-rich CPCC 6 60 7.6E-20 T 12-10-2018 IPR025983 Cysteine-rich CPCC domain YPK_1307 58ca514b238d389d2371e30de221882c 131 Pfam PF06836 Protein of unknown function (DUF1240) 37 131 7.9E-40 T 12-10-2018 IPR010665 Protein of unknown function DUF1240 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 Pfam PF00005 ABC transporter 623 860 1.8E-8 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 Gene3D G3DSA:3.40.50.300 617 936 1.3E-137 T 12-10-2018 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 Gene3D G3DSA:1.10.8.280 287 403 1.1E-244 T 12-10-2018 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 Gene3D G3DSA:3.30.190.20 130 244 1.1E-244 T 12-10-2018 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.947 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 925 0.0 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 SUPERFAMILY SSF52540 1 569 1.64E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 Gene3D G3DSA:1.20.1580.10 692 830 1.3E-137 T 12-10-2018 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 SUPERFAMILY SSF52540 619 911 1.77E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 Gene3D G3DSA:1.20.1580.10 90 492 1.1E-244 T 12-10-2018 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3851 57b4914e5dcfd5a62eff820d8efd53f8 947 Gene3D G3DSA:3.40.50.300 6 595 1.1E-244 T 12-10-2018 YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 SUPERFAMILY SSF51735 141 305 8.16E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 Gene3D G3DSA:3.40.50.720 153 286 5.4E-120 T 12-10-2018 YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 SMART SM00829 12 338 1.6E-6 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 1.2E-27 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 2.6E-183 T 12-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 SUPERFAMILY SSF50129 1 173 4.26E-54 T 12-10-2018 IPR011032 GroES-like superfamily YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 4.5E-32 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.682 T 12-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 YPK_4144 a7d4d9901802bc09e60e3f4fa3408a3d 341 Gene3D G3DSA:3.90.180.10 21 328 5.4E-120 T 12-10-2018 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 PRINTS PR00112 Acylphosphatase signature 61 81 7.5E-6 T 12-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 PRINTS PR00112 Acylphosphatase signature 26 51 7.5E-6 T 12-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 PRINTS PR00112 Acylphosphatase signature 5 20 7.5E-6 T 12-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 Gene3D G3DSA:3.30.70.100 1 91 8.9E-31 T 12-10-2018 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 12-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 SUPERFAMILY SSF54975 3 92 6.11E-30 T 12-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 Hamap MF_01450 Acylphosphatase [yccX]. 2 91 30.225 T 12-10-2018 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 12-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YPK_2619 d9e8e44588124e2b8c402ee904357235 92 Pfam PF00708 Acylphosphatase 8 90 7.3E-26 T 12-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 YPK_2403 92b4e8651b29e0425f30e0652f3a0dd6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.5E-23 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_2403 92b4e8651b29e0425f30e0652f3a0dd6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.5E-23 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_2403 92b4e8651b29e0425f30e0652f3a0dd6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.5E-23 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_2403 92b4e8651b29e0425f30e0652f3a0dd6 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 3.3E-33 T 12-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 YPK_2403 92b4e8651b29e0425f30e0652f3a0dd6 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 8.0E-30 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_2403 92b4e8651b29e0425f30e0652f3a0dd6 89 PIRSF PIRSF004669 1 89 1.8E-32 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_0348 d0d3f38ce7231dcf102417a582289634 169 Hamap MF_01181 Regulator of sigma D [rsd]. 1 153 40.696 T 12-10-2018 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd YPK_0348 d0d3f38ce7231dcf102417a582289634 169 PIRSF PIRSF016548 1 161 1.3E-52 T 12-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 YPK_0348 d0d3f38ce7231dcf102417a582289634 169 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 149 6.0E-57 T 12-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 YPK_0348 d0d3f38ce7231dcf102417a582289634 169 Gene3D G3DSA:1.20.120.1370 1 152 1.9E-54 T 12-10-2018 IPR038309 Rsd/AlgQ superfamily YPK_4218 7f4a89f3b5c45c25194f55b11abc686b 206 SUPERFAMILY SSF53335 5 204 3.95E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_4218 7f4a89f3b5c45c25194f55b11abc686b 206 Gene3D G3DSA:3.40.50.150 1 206 5.6E-71 T 12-10-2018 YPK_4218 7f4a89f3b5c45c25194f55b11abc686b 206 Pfam PF02527 rRNA small subunit methyltransferase G 20 201 4.8E-62 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 YPK_4218 7f4a89f3b5c45c25194f55b11abc686b 206 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 202 28.759 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 YPK_4218 7f4a89f3b5c45c25194f55b11abc686b 206 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 26 204 3.1E-58 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 YPK_4218 7f4a89f3b5c45c25194f55b11abc686b 206 PIRSF PIRSF003078 1 206 2.8E-61 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 Gene3D G3DSA:2.40.50.530 1 65 2.1E-19 T 12-10-2018 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 12-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 Pfam PF01632 Ribosomal protein L35 2 60 2.7E-23 T 12-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 5.2E-22 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 5.2E-22 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 5.2E-22 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.5E-26 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.039 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 YPK_1822 3900421b7bba8c1069ad460262660cfa 65 SUPERFAMILY SSF143034 2 64 1.44E-22 T 12-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_2459 a1fd1052b002b5bfcbf57f3f79c99100 488 Gene3D G3DSA:3.40.309.10 248 444 9.8E-174 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_2459 a1fd1052b002b5bfcbf57f3f79c99100 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YPK_2459 a1fd1052b002b5bfcbf57f3f79c99100 488 Gene3D G3DSA:3.40.605.10 8 472 9.8E-174 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_2459 a1fd1052b002b5bfcbf57f3f79c99100 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YPK_2459 a1fd1052b002b5bfcbf57f3f79c99100 488 Pfam PF00171 Aldehyde dehydrogenase family 17 474 3.0E-168 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_2459 a1fd1052b002b5bfcbf57f3f79c99100 488 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 4 487 9.8E-215 T 12-10-2018 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 YPK_2459 a1fd1052b002b5bfcbf57f3f79c99100 488 SUPERFAMILY SSF53720 3 480 1.15E-164 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_2420 c776d8f9a6588da3d494b0edbf55fc92 260 SUPERFAMILY SSF117143 93 222 7.59E-36 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPK_2420 c776d8f9a6588da3d494b0edbf55fc92 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 9.8E-27 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_2420 c776d8f9a6588da3d494b0edbf55fc92 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 3.4E-118 T 12-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 YPK_2420 c776d8f9a6588da3d494b0edbf55fc92 260 Pfam PF00460 Flagella basal body rod protein 5 35 8.8E-14 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_2420 c776d8f9a6588da3d494b0edbf55fc92 260 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YPK_2420 c776d8f9a6588da3d494b0edbf55fc92 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 1.4E-49 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPK_2420 c776d8f9a6588da3d494b0edbf55fc92 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 146 243 2.5E-29 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPK_1174 0121345a6eb833a5931dce08dfec334f 127 SUPERFAMILY SSF51998 27 125 1.33E-24 T 12-10-2018 YPK_1174 0121345a6eb833a5931dce08dfec334f 127 ProSitePatterns PS00850 Glycine radical domain signature. 97 105 - T 12-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPK_1174 0121345a6eb833a5931dce08dfec334f 127 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 127 1.1E-71 T 12-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA YPK_1174 0121345a6eb833a5931dce08dfec334f 127 PIRSF PIRSF000378 2 127 1.5E-54 T 12-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA YPK_1174 0121345a6eb833a5931dce08dfec334f 127 Pfam PF01228 Glycine radical 14 108 1.1E-22 T 12-10-2018 IPR001150 Glycine radical domain GO:0003824 YPK_1174 0121345a6eb833a5931dce08dfec334f 127 Gene3D G3DSA:3.20.70.20 59 127 3.0E-25 T 12-10-2018 YPK_1174 0121345a6eb833a5931dce08dfec334f 127 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 127 41.885 T 12-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 278 2.6E-15 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 Gene3D G3DSA:3.40.50.720 3 277 1.1E-112 T 12-10-2018 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 SUPERFAMILY SSF51735 91 257 3.78E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 357 46.78 T 12-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 Gene3D G3DSA:3.40.50.720 92 257 1.1E-112 T 12-10-2018 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 SUPERFAMILY SSF52283 5 129 2.34E-16 T 12-10-2018 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 Pfam PF11890 Domain of unknown function (DUF3410) 289 369 5.2E-29 T 12-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 256 1.2E-31 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 Gene3D G3DSA:3.30.1370.170 293 374 6.6E-32 T 12-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPK_1527 e2ddbfcf290a9196948591649f8edc74 375 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 Pfam PF00158 Sigma-54 interaction domain 19 183 8.5E-66 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 40 53 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 228 237 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 102 117 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 SUPERFAMILY SSF46689 228 330 5.38E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 SUPERFAMILY SSF52540 26 254 1.56E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 Gene3D G3DSA:1.10.10.60 271 337 1.9E-8 T 12-10-2018 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 Pfam PF02954 Bacterial regulatory protein, Fis family 296 329 3.8E-10 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 Gene3D G3DSA:1.10.8.60 187 252 6.8E-21 T 12-10-2018 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 Gene3D G3DSA:3.40.50.300 6 186 8.0E-59 T 12-10-2018 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 297 314 1.7E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 314 334 1.7E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_0709 f85ca7c750d5413b93de79caa77adfa5 342 SMART SM00382 36 179 9.4E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 SUPERFAMILY SSF69318 1791 2060 2.75E-17 T 12-10-2018 YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 Pfam PF11713 Peptidase C80 family 772 926 1.4E-34 T 12-10-2018 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 Pfam PF11713 Peptidase C80 family 1084 1260 7.5E-31 T 12-10-2018 IPR020974 CGT/MARTX, cysteine protease (CPD) domain YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 Gene3D G3DSA:2.150.10.10 2162 2376 7.2E-11 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 SUPERFAMILY SSF51120 2163 2571 4.71E-11 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 SUPERFAMILY SSF51120 2639 2762 2.49E-8 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 Gene3D G3DSA:3.40.50.11050 740 953 6.9E-7 T 12-10-2018 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 Gene3D G3DSA:3.40.50.11050 1053 1279 1.9E-59 T 12-10-2018 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 Gene3D G3DSA:2.150.10.10 2485 2611 3.0E-6 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0825 8f650a255c6538142cbc30f4795fabca 3110 Gene3D G3DSA:2.150.10.10 2638 2769 4.4E-10 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_3521 60e68760b7314a5bae42de853d152172 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3521 60e68760b7314a5bae42de853d152172 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.2E-5 T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3521 60e68760b7314a5bae42de853d152172 360 Pfam PF00953 Glycosyl transferase family 4 99 284 1.1E-36 T 12-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 YPK_3521 60e68760b7314a5bae42de853d152172 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 1.5E-159 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3521 60e68760b7314a5bae42de853d152172 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3521 60e68760b7314a5bae42de853d152172 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 26.007 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_1760 3ebc1a7563b4052bf7e3d7a841cfd0db 254 Gene3D G3DSA:1.10.101.10 173 254 4.5E-29 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 YPK_1760 3ebc1a7563b4052bf7e3d7a841cfd0db 254 SMART SM00644 7 158 3.5E-30 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_1760 3ebc1a7563b4052bf7e3d7a841cfd0db 254 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 158 3.4E-22 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_1760 3ebc1a7563b4052bf7e3d7a841cfd0db 254 SUPERFAMILY SSF55846 9 174 5.5E-46 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_1760 3ebc1a7563b4052bf7e3d7a841cfd0db 254 Gene3D G3DSA:3.40.80.10 17 172 7.2E-50 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_1760 3ebc1a7563b4052bf7e3d7a841cfd0db 254 SUPERFAMILY SSF47090 174 254 8.63E-22 T 12-10-2018 IPR036365 PGBD-like superfamily YPK_4234 90941fafa5978fb710eadef21efb7356 258 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_4234 90941fafa5978fb710eadef21efb7356 258 Gene3D G3DSA:3.40.50.300 10 256 1.2E-67 T 12-10-2018 YPK_4234 90941fafa5978fb710eadef21efb7356 258 SMART SM00382 36 238 5.7E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4234 90941fafa5978fb710eadef21efb7356 258 Pfam PF00005 ABC transporter 27 182 2.0E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_4234 90941fafa5978fb710eadef21efb7356 258 SUPERFAMILY SSF52540 11 245 4.73E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4234 90941fafa5978fb710eadef21efb7356 258 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 12 258 4.0E-121 T 12-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 SMART SM00387 346 458 2.3E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 456 3.9E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 301 2.9E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 Pfam PF00672 HAMP domain 184 232 1.1E-12 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 SMART SM00388 237 301 1.4E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 SMART SM00304 184 236 6.8E-14 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 411 6.9E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 397 6.9E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 6.9E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 Gene3D G3DSA:3.30.565.10 306 458 5.3E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 SUPERFAMILY SSF47384 220 301 1.1E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 Gene3D G3DSA:1.10.287.130 183 294 2.2E-28 T 12-10-2018 YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 SUPERFAMILY SSF55874 290 456 1.17E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1328 9aa3a130778bb0c712f46c36e874125a 461 SUPERFAMILY SSF158472 185 233 2.88E-10 T 12-10-2018 YPK_3259 ad04a9c4e9eb6d14471c207a0dc82de9 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 4.5E-75 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 YPK_3259 ad04a9c4e9eb6d14471c207a0dc82de9 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 88.723 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 YPK_3259 ad04a9c4e9eb6d14471c207a0dc82de9 149 Pfam PF03477 ATP cone domain 50 136 5.9E-16 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 YPK_3018 a52186c9f3a456adcb0d9158cd022dc9 220 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 12 74 1.7E-13 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YPK_3018 a52186c9f3a456adcb0d9158cd022dc9 220 Pfam PF01467 Cytidylyltransferase-like 13 193 2.4E-34 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 YPK_3018 a52186c9f3a456adcb0d9158cd022dc9 220 Gene3D G3DSA:3.40.50.620 8 219 1.1E-66 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3018 a52186c9f3a456adcb0d9158cd022dc9 220 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 9 219 31.591 T 12-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YPK_3018 a52186c9f3a456adcb0d9158cd022dc9 220 SUPERFAMILY SSF52374 11 219 2.39E-58 T 12-10-2018 YPK_3018 a52186c9f3a456adcb0d9158cd022dc9 220 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 13 218 1.8E-58 T 12-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 139 1.1E-29 T 12-10-2018 IPR002178 PTS EIIA type-2 domain YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 Gene3D G3DSA:3.40.930.10 1 142 1.9E-40 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 SUPERFAMILY SSF55594 286 374 3.93E-23 T 12-10-2018 IPR035895 HPr-like superfamily YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 12-10-2018 IPR002178 PTS EIIA type-2 domain YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 SUPERFAMILY SSF55804 2 140 5.36E-38 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 Pfam PF00381 PTS HPr component phosphorylation site 287 368 1.2E-23 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 3.2E-22 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 Gene3D G3DSA:3.30.1340.10 285 370 1.5E-25 T 12-10-2018 IPR035895 HPr-like superfamily YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 326 341 - T 12-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 PRINTS PR00107 Phosphocarrier protein signature 325 340 8.8E-18 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 PRINTS PR00107 Phosphocarrier protein signature 297 313 8.8E-18 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 PRINTS PR00107 Phosphocarrier protein signature 340 357 8.8E-18 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 SUPERFAMILY SSF55804 148 276 1.92E-13 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_2764 3b9b49d401f72e80a3f15845ca0f6270 377 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 297 304 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPK_1390 85b5712bd4f4b6a1a43165f53390bba6 198 SUPERFAMILY SSF55811 10 188 4.6E-50 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_1390 85b5712bd4f4b6a1a43165f53390bba6 198 Pfam PF00293 NUDIX domain 45 169 1.8E-12 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_1390 85b5712bd4f4b6a1a43165f53390bba6 198 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 11 185 5.0E-54 T 12-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 YPK_1390 85b5712bd4f4b6a1a43165f53390bba6 198 Gene3D G3DSA:3.90.79.10 2 188 3.7E-57 T 12-10-2018 YPK_2637 790a5de70509f1cc91c5ebf4ed4683e0 192 SUPERFAMILY SSF159594 24 190 5.49E-27 T 12-10-2018 YPK_2637 790a5de70509f1cc91c5ebf4ed4683e0 192 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 32 185 4.0E-38 T 12-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component YPK_2464 04f6721d7605175e690e3de309b270d5 324 SUPERFAMILY SSF52728 163 322 1.28E-56 T 12-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 YPK_2464 04f6721d7605175e690e3de309b270d5 324 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 3 116 5.2E-45 T 12-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 YPK_2464 04f6721d7605175e690e3de309b270d5 324 Pfam PF03830 PTS system sorbose subfamily IIB component 165 311 7.7E-57 T 12-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 YPK_2464 04f6721d7605175e690e3de309b270d5 324 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 165 311 5.3E-58 T 12-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 YPK_2464 04f6721d7605175e690e3de309b270d5 324 Pfam PF03610 PTS system fructose IIA component 5 116 3.7E-33 T 12-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 YPK_2464 04f6721d7605175e690e3de309b270d5 324 Gene3D G3DSA:3.40.35.10 160 324 5.8E-62 T 12-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 YPK_2464 04f6721d7605175e690e3de309b270d5 324 Gene3D G3DSA:3.40.50.510 2 134 1.1E-41 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 YPK_2464 04f6721d7605175e690e3de309b270d5 324 SUPERFAMILY SSF53062 3 128 5.1E-37 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 YPK_3387 72e1b3537f4c5d1e085de1b353add4bc 313 SUPERFAMILY SSF53822 28 305 3.83E-77 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_3387 72e1b3537f4c5d1e085de1b353add4bc 313 Gene3D G3DSA:3.40.50.2300 36 283 7.5E-91 T 12-10-2018 YPK_3387 72e1b3537f4c5d1e085de1b353add4bc 313 Pfam PF13407 Periplasmic binding protein domain 29 284 7.0E-58 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_3387 72e1b3537f4c5d1e085de1b353add4bc 313 Gene3D G3DSA:3.40.50.2300 130 264 7.5E-91 T 12-10-2018 YPK_1292 cc498c9647fccebedd88cf7e8ead8cc2 368 Gene3D G3DSA:1.10.260.40 4 111 7.1E-21 T 12-10-2018 YPK_1292 cc498c9647fccebedd88cf7e8ead8cc2 368 Pfam PF13464 Domain of unknown function (DUF4115) 291 365 9.2E-24 T 12-10-2018 IPR025194 Domain of unknown function DUF4115 YPK_1292 cc498c9647fccebedd88cf7e8ead8cc2 368 Hamap MF_02017 Cytoskeleton protein RodZ [rodZ]. 1 368 42.681 T 12-10-2018 IPR023690 Cytoskeleton protein RodZ GO:0008360|GO:0016021 YPK_1292 cc498c9647fccebedd88cf7e8ead8cc2 368 SMART SM00530 18 79 1.7E-6 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1292 cc498c9647fccebedd88cf7e8ead8cc2 368 SUPERFAMILY SSF47413 12 81 4.83E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1292 cc498c9647fccebedd88cf7e8ead8cc2 368 Pfam PF13413 Helix-turn-helix domain 18 79 2.4E-15 T 12-10-2018 YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 Gene3D G3DSA:2.40.50.140 286 343 6.4E-27 T 12-10-2018 YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 Gene3D G3DSA:3.40.50.300 4 221 1.1E-64 T 12-10-2018 YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 SUPERFAMILY SSF52540 4 241 6.16E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 SUPERFAMILY SSF50331 236 359 9.23E-23 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 SMART SM00382 28 210 4.6E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 Pfam PF00005 ABC transporter 20 161 8.0E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 Gene3D G3DSA:2.40.50.940 222 352 6.4E-27 T 12-10-2018 YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 Pfam PF08402 TOBE domain 280 351 9.0E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_3706 6d24638894da9bd3364abdf87dab5ca2 364 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0092 daf578d4274282727ce85049de606691 358 ProSitePatterns PS00211 ABC transporters family signature. 183 197 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0092 daf578d4274282727ce85049de606691 358 Gene3D G3DSA:3.40.50.300 32 357 7.8E-95 T 12-10-2018 YPK_0092 daf578d4274282727ce85049de606691 358 SUPERFAMILY SSF52540 44 282 6.44E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0092 daf578d4274282727ce85049de606691 358 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 262 327 2.3E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_0092 daf578d4274282727ce85049de606691 358 Pfam PF00005 ABC transporter 59 210 2.4E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0092 daf578d4274282727ce85049de606691 358 SMART SM00382 68 260 2.8E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0092 daf578d4274282727ce85049de606691 358 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 261 345 4.1E-26 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 Pfam PF00005 ABC transporter 272 425 9.4E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 Gene3D G3DSA:3.40.50.300 2 237 3.0E-56 T 12-10-2018 YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 SUPERFAMILY SSF52540 263 484 6.23E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 SMART SM00382 29 217 1.2E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 SMART SM00382 280 474 1.1E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 Pfam PF00005 ABC transporter 20 169 4.1E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 Gene3D G3DSA:3.40.50.300 239 493 1.4E-49 T 12-10-2018 YPK_4067 2b09b2c874d857115d485cf0eb1c513d 496 SUPERFAMILY SSF52540 3 227 6.41E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0821 fe7b17d6f645dd4f430476fb3c5ca6ae 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 2.1E-71 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 YPK_0821 fe7b17d6f645dd4f430476fb3c5ca6ae 239 Gene3D G3DSA:3.40.50.150 30 239 5.0E-72 T 12-10-2018 YPK_0821 fe7b17d6f645dd4f430476fb3c5ca6ae 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 31.119 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 YPK_0821 fe7b17d6f645dd4f430476fb3c5ca6ae 239 SUPERFAMILY SSF53335 18 237 3.41E-41 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0821 fe7b17d6f645dd4f430476fb3c5ca6ae 239 Pfam PF02390 Putative methyltransferase 64 233 1.8E-60 T 12-10-2018 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 SUPERFAMILY SSF54814 2 106 1.91E-37 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 12-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 Gene3D G3DSA:3.30.1140.32 108 208 3.9E-46 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 SMART SM00322 60 125 1.6E-6 T 12-10-2018 IPR004087 K Homology domain GO:0003676 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.264 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 SUPERFAMILY SSF54821 108 206 6.93E-41 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.0E-41 T 12-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 Gene3D G3DSA:3.30.300.20 17 107 1.3E-29 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.3E-100 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 YPK_0289 e4854c3184f2f6bef7a38facf4b9e29c 232 Pfam PF07650 KH domain 38 111 8.9E-19 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_3752 89150682ffe7c9c062b7a99927a5855a 93 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 26 75 3.3E-12 T 12-10-2018 IPR010260 DNA-binding transcriptional activator AlpA YPK_2977 2163c2911bafea27e8e92a610d5e9ada 113 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 4 112 31.46 T 12-10-2018 IPR026592 Outer membrane protein assembly factor BamE YPK_2977 2163c2911bafea27e8e92a610d5e9ada 113 Pfam PF04355 SmpA / OmlA family 35 104 1.4E-25 T 12-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 YPK_2977 2163c2911bafea27e8e92a610d5e9ada 113 Gene3D G3DSA:3.30.1450.10 34 113 6.6E-30 T 12-10-2018 IPR037873 BamE-like YPK_0251 83c06b8684c73d37e999ccd06fc79d65 159 SUPERFAMILY SSF141452 4 158 1.44E-35 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_0251 83c06b8684c73d37e999ccd06fc79d65 159 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 156 5.2E-58 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_0251 83c06b8684c73d37e999ccd06fc79d65 159 Pfam PF05638 Type VI secretion system effector, Hcp 7 143 4.3E-22 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_0251 83c06b8684c73d37e999ccd06fc79d65 159 Gene3D G3DSA:2.30.110.20 2 158 7.6E-51 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_2348 c9d1eeb0c53d76774c9254c9e09f8518 171 Pfam PF04985 Phage tail tube protein FII 4 170 4.2E-66 T 12-10-2018 IPR006498 Tail tube protein YPK_2348 c9d1eeb0c53d76774c9254c9e09f8518 171 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 171 7.5E-55 T 12-10-2018 IPR006498 Tail tube protein YPK_0940 fed09e39883f50766450cd3f9b043774 247 Pfam PF05944 Phage small terminase subunit 38 168 1.4E-40 T 12-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 Gene3D G3DSA:3.40.1190.10 86 317 1.6E-85 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 Gene3D G3DSA:3.40.1390.10 1 85 2.5E-25 T 12-10-2018 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 Pfam PF02875 Mur ligase family, glutamate ligase domain 319 397 1.8E-13 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 Pfam PF01225 Mur ligase family, catalytic domain 28 96 9.4E-13 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 Pfam PF08245 Mur ligase middle domain 111 299 3.9E-48 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 SUPERFAMILY SSF63418 1 102 1.24E-27 T 12-10-2018 IPR035911 MurE/MurF, N-terminal YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 SUPERFAMILY SSF53244 319 452 2.52E-36 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 SUPERFAMILY SSF53623 105 316 3.92E-58 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 Gene3D G3DSA:3.90.190.20 318 458 3.2E-45 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 34 452 1.6E-139 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3522 9cc6f404b21a13c3db603d25a6f66007 458 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 453 34.192 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 8 380 5.7E-155 T 12-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 385 65.426 T 12-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 SUPERFAMILY SSF55031 184 298 3.44E-22 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 SUPERFAMILY SSF53187 4 385 4.0E-57 T 12-10-2018 YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 Pfam PF07687 Peptidase dimerisation domain 181 290 1.2E-25 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 Gene3D G3DSA:3.30.70.360 184 299 1.2E-80 T 12-10-2018 YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 Pfam PF01546 Peptidase family M20/M25/M40 79 380 2.7E-33 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 78 87 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 113 150 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YPK_4090 ea35971f6e274bc17a6ba56c17ec3010 387 Gene3D G3DSA:3.40.630.10 23 367 1.2E-80 T 12-10-2018 YPK_1145 db1047a61ae4d80e1e84d1aec7a5a17a 453 PIRSF PIRSF006351 1 446 1.9E-126 T 12-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 YPK_1145 db1047a61ae4d80e1e84d1aec7a5a17a 453 Pfam PF02378 Phosphotransferase system, EIIC 30 363 2.9E-44 T 12-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YPK_1145 db1047a61ae4d80e1e84d1aec7a5a17a 453 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 438 4.6E-155 T 12-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 YPK_1145 db1047a61ae4d80e1e84d1aec7a5a17a 453 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 438 4.6E-155 T 12-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 Gene3D G3DSA:1.20.1270.10 543 637 2.1E-28 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 SUPERFAMILY SSF100920 406 555 5.1E-51 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 Pfam PF00012 Hsp70 protein 67 622 1.5E-185 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 64 637 3.5E-258 T 12-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 PRINTS PR00301 70kDa heat shock protein signature 351 367 1.5E-52 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 PRINTS PR00301 70kDa heat shock protein signature 407 426 1.5E-52 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 PRINTS PR00301 70kDa heat shock protein signature 174 194 1.5E-52 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 PRINTS PR00301 70kDa heat shock protein signature 382 402 1.5E-52 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 PRINTS PR00301 70kDa heat shock protein signature 233 243 1.5E-52 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 PRINTS PR00301 70kDa heat shock protein signature 488 504 1.5E-52 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 PRINTS PR00301 70kDa heat shock protein signature 20 33 1.5E-52 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 Gene3D G3DSA:2.60.34.10 401 542 1.4E-50 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 Gene3D G3DSA:3.90.640.10 259 326 3.0E-103 T 12-10-2018 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 SUPERFAMILY SSF100934 526 637 5.49E-37 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 SUPERFAMILY SSF53067 20 218 1.65E-47 T 12-10-2018 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 SUPERFAMILY SSF53067 222 399 9.36E-51 T 12-10-2018 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 227 240 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 Gene3D G3DSA:3.30.420.40 220 384 3.0E-103 T 12-10-2018 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 354 368 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 Gene3D G3DSA:3.30.420.40 23 394 3.0E-103 T 12-10-2018 YPK_1280 1177732267604b2e67ef9fe05075e6f3 638 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 638 44.388 T 12-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 71 5.3E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Pfam PF03466 LysR substrate binding domain 97 295 1.5E-26 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Gene3D G3DSA:3.40.190.10 103 294 2.3E-38 T 12-10-2018 YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Gene3D G3DSA:1.10.10.10 6 92 1.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 SUPERFAMILY SSF53850 99 295 6.52E-26 T 12-10-2018 YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 SUPERFAMILY SSF46785 9 90 9.98E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 4.8E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 4.8E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 4.8E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2913 229da0f9f9a2dffcfe1c8dbb327f0fac 297 Gene3D G3DSA:3.40.190.10 174 276 2.3E-38 T 12-10-2018 YPK_0460 1c143fe2d9eb4b7125ff233bac97f673 150 PIRSF PIRSF001399 3 149 5.8E-59 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YPK_0460 1c143fe2d9eb4b7125ff233bac97f673 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 12-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YPK_0460 1c143fe2d9eb4b7125ff233bac97f673 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 74.394 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YPK_0460 1c143fe2d9eb4b7125ff233bac97f673 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 21 150 2.0E-71 T 12-10-2018 YPK_0460 1c143fe2d9eb4b7125ff233bac97f673 150 SUPERFAMILY SSF52304 6 148 1.1E-61 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YPK_0460 1c143fe2d9eb4b7125ff233bac97f673 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 2.9E-61 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YPK_0460 1c143fe2d9eb4b7125ff233bac97f673 150 Gene3D G3DSA:3.40.50.9100 1 150 1.2E-68 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YPK_0460 1c143fe2d9eb4b7125ff233bac97f673 150 Pfam PF01220 Dehydroquinase class II 7 142 6.2E-61 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 Gene3D G3DSA:1.10.150.570 570 622 5.4E-23 T 12-10-2018 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 4.7E-294 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 Gene3D G3DSA:1.10.10.1800 459 550 3.2E-30 T 12-10-2018 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 Pfam PF13932 GidA associated domain 403 616 1.1E-75 T 12-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.617 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 Gene3D G3DSA:3.50.50.60 294 458 1.1E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 Gene3D G3DSA:3.50.50.60 2 245 7.5E-91 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 SUPERFAMILY SSF51905 6 261 6.06E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 SMART SM01228 546 617 2.8E-44 T 12-10-2018 YPK_4217 a6f4f1782e65c5229c883cd2b0257fde 629 Pfam PF01134 Glucose inhibited division protein A 8 398 1.5E-168 T 12-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 YPK_3487 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:1.25.40.310 1 161 2.5E-74 T 12-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YPK_3487 00e46d914030713f81c48e646172aa9e 865 SUPERFAMILY SSF52016 163 372 1.12E-72 T 12-10-2018 YPK_3487 00e46d914030713f81c48e646172aa9e 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YPK_3487 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:3.30.499.10 683 865 1.1E-75 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 YPK_3487 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:3.40.1060.10 385 681 1.0E-151 T 12-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 YPK_3487 00e46d914030713f81c48e646172aa9e 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 1.3E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3487 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:3.30.499.10 402 529 1.0E-151 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 YPK_3487 00e46d914030713f81c48e646172aa9e 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YPK_3487 00e46d914030713f81c48e646172aa9e 865 SUPERFAMILY SSF74778 2 160 6.54E-68 T 12-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YPK_3487 00e46d914030713f81c48e646172aa9e 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 9.7E-99 T 12-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YPK_3487 00e46d914030713f81c48e646172aa9e 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 854 0.0 T 12-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YPK_3487 00e46d914030713f81c48e646172aa9e 865 SUPERFAMILY SSF53732 379 859 2.09E-150 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 YPK_3487 00e46d914030713f81c48e646172aa9e 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 2.4E-67 T 12-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YPK_3487 00e46d914030713f81c48e646172aa9e 865 PIRSF PIRSF036687 1 859 0.0 T 12-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 YPK_3487 00e46d914030713f81c48e646172aa9e 865 Gene3D G3DSA:3.20.19.10 162 361 2.0E-81 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 158 2.7E-80 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.828 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 6.6E-42 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 6.6E-42 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 6.6E-42 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 6.6E-42 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 6.6E-42 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 12-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 SUPERFAMILY SSF53098 3 156 4.55E-55 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_2145 f7080578c14816d77898f28a8a81e08d 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 3.3E-65 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 YPK_2145 f7080578c14816d77898f28a8a81e08d 173 Gene3D G3DSA:3.30.420.10 2 159 5.5E-54 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_3041 8dc234aff2a348a551cc0f0361cce439 656 Pfam PF00294 pfkB family carbohydrate kinase 28 343 3.1E-43 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_3041 8dc234aff2a348a551cc0f0361cce439 656 Gene3D G3DSA:3.20.20.70 363 656 1.5E-43 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3041 8dc234aff2a348a551cc0f0361cce439 656 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 346 653 5.1E-143 T 12-10-2018 IPR018659 Protein of unknown function DUF2090 YPK_3041 8dc234aff2a348a551cc0f0361cce439 656 Gene3D G3DSA:3.40.1190.20 30 333 5.2E-90 T 12-10-2018 IPR029056 Ribokinase-like YPK_3041 8dc234aff2a348a551cc0f0361cce439 656 SUPERFAMILY SSF53613 25 350 7.33E-70 T 12-10-2018 IPR029056 Ribokinase-like YPK_3041 8dc234aff2a348a551cc0f0361cce439 656 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 26 351 1.9E-125 T 12-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 YPK_3041 8dc234aff2a348a551cc0f0361cce439 656 Gene3D G3DSA:2.20.150.10 35 130 5.2E-90 T 12-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 YPK_3041 8dc234aff2a348a551cc0f0361cce439 656 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 295 308 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YPK_0074 2562d59848848554a4c9b6824fdd7307 182 Gene3D G3DSA:3.40.50.2020 1 175 2.0E-30 T 12-10-2018 YPK_0074 2562d59848848554a4c9b6824fdd7307 182 SUPERFAMILY SSF53271 29 170 2.36E-24 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_0074 2562d59848848554a4c9b6824fdd7307 182 Pfam PF00156 Phosphoribosyl transferase domain 29 146 4.9E-9 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YPK_1579 005c4b43998bee6b61f27528904e7c35 316 Gene3D G3DSA:3.40.50.720 15 309 4.1E-110 T 12-10-2018 YPK_1579 005c4b43998bee6b61f27528904e7c35 316 Gene3D G3DSA:3.40.50.720 103 286 4.1E-110 T 12-10-2018 YPK_1579 005c4b43998bee6b61f27528904e7c35 316 SUPERFAMILY SSF51735 103 284 2.76E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1579 005c4b43998bee6b61f27528904e7c35 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 283 1.3E-48 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YPK_1579 005c4b43998bee6b61f27528904e7c35 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 8 314 1.8E-25 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YPK_1579 005c4b43998bee6b61f27528904e7c35 316 SUPERFAMILY SSF52283 5 137 9.14E-31 T 12-10-2018 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 SUPERFAMILY SSF53383 150 620 1.78E-103 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 Gene3D G3DSA:3.40.640.10 150 453 1.2E-89 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 SUPERFAMILY SSF55904 623 763 2.35E-35 T 12-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 PIRSF PIRSF009393 6 768 1.6E-278 T 12-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 394 408 - T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 Gene3D G3DSA:3.90.1150.10 454 643 4.0E-74 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 Gene3D G3DSA:3.40.50.2300 10 149 4.5E-47 T 12-10-2018 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 Gene3D G3DSA:3.90.100.10 644 768 3.1E-40 T 12-10-2018 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 26 144 1.4E-20 T 12-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 628 757 7.7E-43 T 12-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 YPK_2860 7a9507c1b1aced8859465b7116aa163c 768 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 150 603 8.9E-159 T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 YPK_2530 6377f52f90382ea2df5efac1bbe4999c 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 3.9E-79 T 12-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 YPK_2530 6377f52f90382ea2df5efac1bbe4999c 245 Pfam PF00977 Histidine biosynthesis protein 1 233 3.4E-77 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 YPK_2530 6377f52f90382ea2df5efac1bbe4999c 245 Gene3D G3DSA:3.20.20.70 1 245 8.2E-95 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2530 6377f52f90382ea2df5efac1bbe4999c 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.291 T 12-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 YPK_2530 6377f52f90382ea2df5efac1bbe4999c 245 SUPERFAMILY SSF51366 1 242 6.53E-66 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YPK_4156 daa639387bfe153ea5528bc8797871e4 443 Gene3D G3DSA:3.40.50.10300 226 443 2.4E-87 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 YPK_4156 daa639387bfe153ea5528bc8797871e4 443 SUPERFAMILY SSF102645 224 439 2.62E-80 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 YPK_4156 daa639387bfe153ea5528bc8797871e4 443 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 227 408 3.3E-74 T 12-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 YPK_4156 daa639387bfe153ea5528bc8797871e4 443 Gene3D G3DSA:3.40.50.1950 39 225 2.6E-58 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 YPK_4156 daa639387bfe153ea5528bc8797871e4 443 SUPERFAMILY SSF52507 42 220 1.09E-61 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 YPK_4156 daa639387bfe153ea5528bc8797871e4 443 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 44 434 2.4E-163 T 12-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 YPK_4156 daa639387bfe153ea5528bc8797871e4 443 Pfam PF02441 Flavoprotein 46 217 1.6E-45 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 YPK_2727 1c293fae4d8890a9aaf5570ae7c1ce2c 281 SUPERFAMILY SSF161098 8 266 5.7E-52 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2727 1c293fae4d8890a9aaf5570ae7c1ce2c 281 Gene3D G3DSA:1.10.3720.10 16 270 5.8E-46 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2727 1c293fae4d8890a9aaf5570ae7c1ce2c 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 268 4.2E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0451 54ce61f4cf462698308f6b6942b6af2c 158 SUPERFAMILY SSF160631 53 141 1.26E-5 T 12-10-2018 YPK_2153 fd7f0c22b784df7409e9e93b2d46c627 254 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 204 28.157 T 12-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 YPK_2153 fd7f0c22b784df7409e9e93b2d46c627 254 SUPERFAMILY SSF110395 3 244 8.76E-76 T 12-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 YPK_2153 fd7f0c22b784df7409e9e93b2d46c627 254 Gene3D G3DSA:3.20.20.380 1 253 8.0E-88 T 12-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 YPK_2153 fd7f0c22b784df7409e9e93b2d46c627 254 Pfam PF03932 CutC family 3 201 2.0E-73 T 12-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 YPK_3935 a345349a30e122110b05688a7a283684 233 Gene3D G3DSA:2.40.30.10 2 98 1.4E-23 T 12-10-2018 YPK_3935 a345349a30e122110b05688a7a283684 233 SUPERFAMILY SSF63380 3 97 1.47E-20 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_3935 a345349a30e122110b05688a7a283684 233 SUPERFAMILY SSF52343 100 231 1.83E-34 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_3935 a345349a30e122110b05688a7a283684 233 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 1.5E-21 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YPK_3935 a345349a30e122110b05688a7a283684 233 Pfam PF00970 Oxidoreductase FAD-binding domain 6 95 1.5E-4 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YPK_3935 a345349a30e122110b05688a7a283684 233 Gene3D G3DSA:3.40.50.80 99 233 3.8E-28 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_3935 a345349a30e122110b05688a7a283684 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 2.4E-12 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3935 a345349a30e122110b05688a7a283684 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 2.4E-12 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3935 a345349a30e122110b05688a7a283684 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 2.4E-12 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3935 a345349a30e122110b05688a7a283684 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 91 100 2.4E-12 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_3935 a345349a30e122110b05688a7a283684 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 2.4E-12 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 YPK_4231 f80e62d218e1d46734910de6fa285a29 346 Gene3D G3DSA:3.40.190.10 103 278 1.5E-129 T 12-10-2018 YPK_4231 f80e62d218e1d46734910de6fa285a29 346 SUPERFAMILY SSF53850 28 339 3.31E-95 T 12-10-2018 YPK_4231 f80e62d218e1d46734910de6fa285a29 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 9.2E-128 T 12-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 YPK_4231 f80e62d218e1d46734910de6fa285a29 346 Gene3D G3DSA:3.40.190.10 29 326 1.5E-129 T 12-10-2018 YPK_4231 f80e62d218e1d46734910de6fa285a29 346 Pfam PF12849 PBP superfamily domain 23 306 5.7E-61 T 12-10-2018 IPR024370 PBP domain YPK_4231 f80e62d218e1d46734910de6fa285a29 346 PIRSF PIRSF002756 1 338 1.2E-104 T 12-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 YPK_1431 5927c1a516c41360fb93996eb5e70ae8 328 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 318 4.3E-83 T 12-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 YPK_1431 5927c1a516c41360fb93996eb5e70ae8 328 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 191 317 2.5E-49 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 YPK_1431 5927c1a516c41360fb93996eb5e70ae8 328 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 320 24.729 T 12-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 YPK_1431 5927c1a516c41360fb93996eb5e70ae8 328 SUPERFAMILY SSF64383 189 322 9.15E-49 T 12-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 YPK_1431 5927c1a516c41360fb93996eb5e70ae8 328 Gene3D G3DSA:3.30.1400.10 186 326 9.1E-55 T 12-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 YPK_1431 5927c1a516c41360fb93996eb5e70ae8 328 SMART SM00771 188 318 2.5E-78 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 YPK_1431 5927c1a516c41360fb93996eb5e70ae8 328 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 207 325 4.0E-65 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 YPK_2329 efd51f395893379a3a7b18409d396f8b 351 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 6 341 3.5E-89 T 12-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid YPK_2329 efd51f395893379a3a7b18409d396f8b 351 Pfam PF05125 Phage major capsid protein, P2 family 8 340 3.5E-140 T 12-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 98 322 4.0E-44 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 Gene3D G3DSA:3.40.50.620 170 307 1.5E-110 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 PRINTS PR00987 Glutamyl-tRNA synthetase signature 127 140 3.6E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 PRINTS PR00987 Glutamyl-tRNA synthetase signature 98 110 3.6E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 PRINTS PR00987 Glutamyl-tRNA synthetase signature 259 269 3.6E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 PRINTS PR00987 Glutamyl-tRNA synthetase signature 112 123 3.6E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 PRINTS PR00987 Glutamyl-tRNA synthetase signature 275 283 3.6E-14 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 SUPERFAMILY SSF52374 95 371 3.94E-85 T 12-10-2018 YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 Gene3D G3DSA:3.40.50.620 95 373 1.5E-110 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 95 379 41.017 T 12-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 YPK_3469 ca4755d9b74f2c4899e028f566d7efc3 394 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 95 352 1.3E-111 T 12-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 YPK_0421 9c73f9992b0e41f7f6c0afdaa4cf2e78 373 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 45 324 2.9E-83 T 12-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 YPK_0421 9c73f9992b0e41f7f6c0afdaa4cf2e78 373 SMART SM00062 43 264 1.5E-24 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_0421 9c73f9992b0e41f7f6c0afdaa4cf2e78 373 Gene3D G3DSA:1.10.8.450 253 286 1.8E-114 T 12-10-2018 YPK_0421 9c73f9992b0e41f7f6c0afdaa4cf2e78 373 SUPERFAMILY SSF53850 41 275 5.26E-48 T 12-10-2018 YPK_0421 9c73f9992b0e41f7f6c0afdaa4cf2e78 373 Gene3D G3DSA:3.40.190.10 122 221 1.8E-114 T 12-10-2018 YPK_0421 9c73f9992b0e41f7f6c0afdaa4cf2e78 373 Gene3D G3DSA:3.40.190.10 45 319 1.8E-114 T 12-10-2018 YPK_0421 9c73f9992b0e41f7f6c0afdaa4cf2e78 373 Pfam PF09084 NMT1/THI5 like 82 198 3.0E-11 T 12-10-2018 IPR015168 SsuA/THI5-like YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 SUPERFAMILY SSF49503 408 531 5.87E-27 T 12-10-2018 IPR008972 Cupredoxin YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 Pfam PF07731 Multicopper oxidase 416 532 8.4E-25 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 Pfam PF00394 Multicopper oxidase 204 290 1.4E-6 T 12-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 Pfam PF07732 Multicopper oxidase 53 166 5.6E-32 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 ProSitePatterns PS00080 Multicopper oxidases signature 2. 514 525 - T 12-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 1 22 4.7E-6 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 Gene3D G3DSA:2.60.40.420 30 175 1.7E-42 T 12-10-2018 IPR008972 Cupredoxin YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 Gene3D G3DSA:2.60.40.420 176 326 9.1E-44 T 12-10-2018 IPR008972 Cupredoxin YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 SUPERFAMILY SSF49503 17 169 1.42E-28 T 12-10-2018 IPR008972 Cupredoxin YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 Gene3D G3DSA:2.60.40.420 346 532 2.4E-49 T 12-10-2018 IPR008972 Cupredoxin YPK_3480 2fd01a78620224a1e9bb603a0c8092cb 533 SUPERFAMILY SSF49503 172 291 1.39E-32 T 12-10-2018 IPR008972 Cupredoxin YPK_2223 64f76613be414e544900f9ac4f6d075e 268 Gene3D G3DSA:3.40.630.40 3 265 1.2E-67 T 12-10-2018 YPK_2223 64f76613be414e544900f9ac4f6d075e 268 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 6 265 7.6E-127 T 12-10-2018 IPR010247 N-formylglutamate deformylase YPK_2223 64f76613be414e544900f9ac4f6d075e 268 Pfam PF05013 N-formylglutamate amidohydrolase 15 232 6.9E-63 T 12-10-2018 IPR007709 N-formylglutamate amidohydrolase YPK_2223 64f76613be414e544900f9ac4f6d075e 268 SUPERFAMILY SSF53187 5 264 1.38E-75 T 12-10-2018 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 SUPERFAMILY SSF75138 229 353 1.57E-25 T 12-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 Gene3D G3DSA:3.40.50.10950 398 708 1.6E-135 T 12-10-2018 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 SUPERFAMILY SSF53659 392 709 1.89E-93 T 12-10-2018 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 5.9E-136 T 12-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 1.1E-127 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 Pfam PF13500 AAA domain 3 229 2.2E-51 T 12-10-2018 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 Gene3D G3DSA:3.40.50.300 5 207 2.9E-11 T 12-10-2018 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 Gene3D G3DSA:3.40.1390.20 225 365 1.2E-14 T 12-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 PIRSF PIRSF006107 1 714 0.0 T 12-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 Pfam PF07085 DRTGG domain 233 344 6.4E-29 T 12-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 Gene3D G3DSA:3.40.50.10750 529 682 1.6E-135 T 12-10-2018 YPK_1550 d178f931fdec855170e9f3736bcaefbf 717 SUPERFAMILY SSF52540 3 240 9.03E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 Gene3D G3DSA:1.10.220.30 106 208 9.6E-22 T 12-10-2018 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 SUPERFAMILY SSF48029 23 123 1.01E-15 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 262 282 2.1E-18 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 50 76 2.1E-18 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 21 37 2.1E-18 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 130 153 2.1E-18 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 286 312 2.1E-18 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 PRINTS PR00954 Flagellar motor switch protein FliG signature 240 260 2.1E-18 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 Pfam PF14842 FliG N-terminal domain 23 117 4.5E-20 T 12-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 Gene3D G3DSA:1.10.220.30 211 344 3.9E-25 T 12-10-2018 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 SUPERFAMILY SSF48029 131 338 5.23E-50 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 Pfam PF14841 FliG middle domain 133 199 1.2E-20 T 12-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 Gene3D G3DSA:1.10.220.30 15 102 3.0E-14 T 12-10-2018 YPK_0712 645e3fffa9cae717d72aac203fd0f4df 347 Pfam PF01706 FliG C-terminal domain 232 337 3.3E-25 T 12-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal YPK_2718 c404471c3db5f49fd78186180414cb80 261 Pfam PF00005 ABC transporter 19 160 8.0E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2718 c404471c3db5f49fd78186180414cb80 261 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2718 c404471c3db5f49fd78186180414cb80 261 SMART SM00382 28 209 1.1E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2718 c404471c3db5f49fd78186180414cb80 261 Gene3D G3DSA:3.40.50.300 3 239 5.9E-57 T 12-10-2018 YPK_2718 c404471c3db5f49fd78186180414cb80 261 SUPERFAMILY SSF52540 4 223 2.11E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0743 906eaff8c3beea0b8facb11a0d85b193 4312 SMART SM00869 4034 4301 1.7E-46 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0743 906eaff8c3beea0b8facb11a0d85b193 4312 Gene3D G3DSA:2.40.128.130 3993 4312 1.6E-95 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0743 906eaff8c3beea0b8facb11a0d85b193 4312 SUPERFAMILY SSF103515 4001 4312 5.49E-53 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0743 906eaff8c3beea0b8facb11a0d85b193 4312 Gene3D G3DSA:2.160.20.20 3497 3992 1.9E-35 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_0743 906eaff8c3beea0b8facb11a0d85b193 4312 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 3880 4312 3.2E-126 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_0743 906eaff8c3beea0b8facb11a0d85b193 4312 SUPERFAMILY SSF51126 3528 3988 5.65E-46 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_0743 906eaff8c3beea0b8facb11a0d85b193 4312 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 5.9E-9 T 12-10-2018 IPR024973 ESPR domain YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 SUPERFAMILY SSF82714 722 808 1.1E-21 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 SUPERFAMILY SSF82693 136 331 3.14E-25 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 SUPERFAMILY SSF82866 833 1025 7.06E-38 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 SUPERFAMILY SSF82714 183 273 2.22E-22 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Pfam PF00873 AcrB/AcrD/AcrF family 2 1025 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Gene3D G3DSA:3.30.70.1440 669 864 0.0 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Gene3D G3DSA:3.30.70.1430 39 817 0.0 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Gene3D G3DSA:1.20.1640.10 9 512 0.0 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.2E-108 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Gene3D G3DSA:3.30.2090.10 180 276 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 SUPERFAMILY SSF82693 565 671 1.52E-29 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 SUPERFAMILY SSF82866 297 498 3.92E-51 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 SUPERFAMILY SSF82693 39 132 7.85E-25 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1036 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Gene3D G3DSA:3.30.70.1430 567 668 0.0 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Gene3D G3DSA:1.20.1640.10 513 1021 0.0 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Gene3D G3DSA:3.30.2090.10 721 809 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 SUPERFAMILY SSF82693 672 855 5.41E-23 T 12-10-2018 YPK_3718 4ea710c7f81fb6344f56584884e064c9 1041 Gene3D G3DSA:3.30.70.1320 134 333 0.0 T 12-10-2018 YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 635 1070 1.0E-112 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 SUPERFAMILY SSF103515 761 1070 9.15E-43 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 SMART SM00869 799 1058 9.6E-30 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 Gene3D G3DSA:2.40.128.130 758 1070 2.4E-67 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 Pfam PF03797 Autotransporter beta-domain 803 1047 3.6E-37 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 SUPERFAMILY SSF51126 162 739 6.28E-46 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 Gene3D G3DSA:2.160.20.20 331 743 3.1E-65 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 Gene3D G3DSA:2.160.20.20 108 330 5.5E-11 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_0107 4129af2fdc9c44d9e7a0a60cfdd540f3 1070 Pfam PF03212 Pertactin 632 738 5.1E-12 T 12-10-2018 IPR004899 Pertactin, central region YPK_0845 41fd499b90841d9abb5743182ad28b98 659 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 28 658 42.642 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 Gene3D G3DSA:1.20.58.930 387 482 6.5E-233 T 12-10-2018 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 Gene3D G3DSA:2.40.37.10 39 591 6.5E-233 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 302 315 - T 12-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 514 539 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 93 108 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 567 588 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 221 243 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 348 365 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 489 510 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 197 218 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 117 131 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01180 Arginine decarboxylase signature 171 186 1.0E-73 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 Gene3D G3DSA:3.20.20.10 94 370 6.5E-233 T 12-10-2018 IPR029066 PLP-binding barrel YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 264 277 8.7E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 125 143 8.7E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 358 377 8.7E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 147 159 8.7E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 567 580 8.7E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 TIGRFAM TIGR01273 speA: arginine decarboxylase 32 657 1.1E-269 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 SUPERFAMILY SSF51419 93 370 1.29E-67 T 12-10-2018 IPR029066 PLP-binding barrel YPK_0845 41fd499b90841d9abb5743182ad28b98 659 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 125 143 - T 12-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YPK_0845 41fd499b90841d9abb5743182ad28b98 659 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 101 368 1.2E-67 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 PIRSF PIRSF001336 17 659 4.8E-254 T 12-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 YPK_0845 41fd499b90841d9abb5743182ad28b98 659 SUPERFAMILY SSF50621 482 588 1.57E-8 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YPK_3482 09a38d0c6d7e84efb31d63abb44e7424 296 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 81 94 - T 12-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YPK_3482 09a38d0c6d7e84efb31d63abb44e7424 296 SUPERFAMILY SSF53335 6 283 4.57E-89 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3482 09a38d0c6d7e84efb31d63abb44e7424 296 Pfam PF01564 Spermine/spermidine synthase domain 60 240 5.8E-67 T 12-10-2018 YPK_3482 09a38d0c6d7e84efb31d63abb44e7424 296 Gene3D G3DSA:2.30.140.10 1 54 1.2E-26 T 12-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YPK_3482 09a38d0c6d7e84efb31d63abb44e7424 296 Pfam PF17284 Spermidine synthase tetramerisation domain 6 57 2.2E-18 T 12-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YPK_3482 09a38d0c6d7e84efb31d63abb44e7424 296 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 39.406 T 12-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YPK_3482 09a38d0c6d7e84efb31d63abb44e7424 296 Gene3D G3DSA:3.40.50.150 55 287 1.6E-80 T 12-10-2018 YPK_3482 09a38d0c6d7e84efb31d63abb44e7424 296 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 1.1E-116 T 12-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 YPK_1515 51fb2acd3fa1f3d42157f71427c04410 268 Gene3D G3DSA:3.30.1380.10 13 266 7.0E-100 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_1515 51fb2acd3fa1f3d42157f71427c04410 268 PIRSF PIRSF018455 2 268 1.1E-118 T 12-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 YPK_1515 51fb2acd3fa1f3d42157f71427c04410 268 SUPERFAMILY SSF55166 14 264 3.69E-100 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_1515 51fb2acd3fa1f3d42157f71427c04410 268 Pfam PF03411 Penicillin-insensitive murein endopeptidase 29 262 6.3E-95 T 12-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 YPK_2414 57864eac10a658b5cf1804d151869770 333 SUPERFAMILY SSF100950 76 327 2.56E-66 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_2414 57864eac10a658b5cf1804d151869770 333 Gene3D G3DSA:1.10.10.60 22 68 5.6E-16 T 12-10-2018 YPK_2414 57864eac10a658b5cf1804d151869770 333 Pfam PF04198 Putative sugar-binding domain 78 327 4.7E-68 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YPK_2414 57864eac10a658b5cf1804d151869770 333 SUPERFAMILY SSF88659 32 63 1.57E-5 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_2414 57864eac10a658b5cf1804d151869770 333 Gene3D G3DSA:3.40.50.1360 69 327 8.4E-73 T 12-10-2018 YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 5.9E-15 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.6E-6 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.6E-6 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 SMART SM00420 6 58 7.4E-14 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 SUPERFAMILY SSF46785 5 60 2.6E-7 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 SUPERFAMILY SSF100950 93 249 1.99E-29 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 SMART SM01134 90 250 3.0E-63 T 12-10-2018 YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 Pfam PF00455 DeoR C terminal sensor domain 92 248 1.5E-50 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain YPK_3397 81610202801b8cee76855ec06eb6b8a6 269 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YPK_1539 9354fb09c215ab19c9b7aae07b7aeaf4 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 220 3.5E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1539 9354fb09c215ab19c9b7aae07b7aeaf4 228 Gene3D G3DSA:1.10.3720.10 1 223 8.0E-49 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1539 9354fb09c215ab19c9b7aae07b7aeaf4 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 114 4.4E-20 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_1539 9354fb09c215ab19c9b7aae07b7aeaf4 228 SUPERFAMILY SSF161098 8 205 4.32E-38 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1496 26ab6b9ab08464ea4fa539acab52e1ae 218 SMART SM00382 26 207 5.2E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1496 26ab6b9ab08464ea4fa539acab52e1ae 218 SUPERFAMILY SSF52540 2 188 3.48E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1496 26ab6b9ab08464ea4fa539acab52e1ae 218 Pfam PF00005 ABC transporter 18 157 3.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1496 26ab6b9ab08464ea4fa539acab52e1ae 218 Gene3D G3DSA:3.40.50.300 1 207 1.3E-42 T 12-10-2018 YPK_1496 26ab6b9ab08464ea4fa539acab52e1ae 218 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1496 26ab6b9ab08464ea4fa539acab52e1ae 218 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 200 7.6E-80 T 12-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 YPK_0381 9ca9ec5122d1d1a771d45ebf09fb6499 423 SUPERFAMILY SSF56935 25 423 1.71E-147 T 12-10-2018 YPK_0381 9ca9ec5122d1d1a771d45ebf09fb6499 423 Pfam PF02264 LamB porin 27 423 4.6E-144 T 12-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 YPK_0381 9ca9ec5122d1d1a771d45ebf09fb6499 423 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 31 418 0.0 T 12-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 YPK_0381 9ca9ec5122d1d1a771d45ebf09fb6499 423 Gene3D G3DSA:2.40.170.10 25 423 3.1E-170 T 12-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 YPK_0381 9ca9ec5122d1d1a771d45ebf09fb6499 423 Hamap MF_01301 Maltoporin [lamB]. 3 423 42.99 T 12-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 4.9E-119 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 Gene3D G3DSA:3.40.50.1370 8 304 2.9E-122 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 4.4E-47 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.736 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 SUPERFAMILY SSF53671 4 306 4.16E-99 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 Gene3D G3DSA:3.40.50.1370 135 292 2.9E-122 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 4.6E-25 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 4.6E-25 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 4.6E-25 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 4.6E-25 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.6E-36 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 3.6E-36 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 3.6E-36 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 YPK_0500 a951642b531823fc3958f9b4e54f9748 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 6.2E-28 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 YPK_1409 b94666000c8716b4c892250dc298b0a2 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 9 271 1.1E-114 T 12-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 YPK_1409 b94666000c8716b4c892250dc298b0a2 277 Gene3D G3DSA:1.10.3720.10 14 272 1.5E-69 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1409 b94666000c8716b4c892250dc298b0a2 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 6 269 2.2E-111 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 YPK_1409 b94666000c8716b4c892250dc298b0a2 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 274 3.4E-30 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1409 b94666000c8716b4c892250dc298b0a2 277 SUPERFAMILY SSF161098 17 264 7.59E-57 T 12-10-2018 IPR035906 MetI-like superfamily YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 Gene3D G3DSA:1.10.520.20 2 106 6.4E-38 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 12-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.1E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.1E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.1E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.1E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.1E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 1.9E-50 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 3.5E-63 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.934 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4223 a4a4c50db4c1f86c245e8cc3e015f003 177 SUPERFAMILY SSF47928 3 104 1.44E-27 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_3916 e07b4620325426d498162cdc13c644b9 404 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 170 397 9.9E-17 T 12-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain YPK_3916 e07b4620325426d498162cdc13c644b9 404 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 5 402 2.0E-121 T 12-10-2018 IPR012843 Type III secretion system YscD/HrpQ YPK_2506 6e2207647a187998e232e1f203e3f394 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 YPK_2506 6e2207647a187998e232e1f203e3f394 381 SUPERFAMILY SSF51395 7 374 7.33E-99 T 12-10-2018 YPK_2506 6e2207647a187998e232e1f203e3f394 381 PIRSF PIRSF000138 2 380 3.7E-122 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 YPK_2506 6e2207647a187998e232e1f203e3f394 381 Pfam PF01070 FMN-dependent dehydrogenase 13 375 1.3E-125 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 YPK_2506 6e2207647a187998e232e1f203e3f394 381 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 73.702 T 12-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 YPK_2506 6e2207647a187998e232e1f203e3f394 381 Gene3D G3DSA:3.20.20.70 3 380 1.9E-125 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 SMART SM00634 582 674 2.0E-11 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 SMART SM00634 691 777 4.8E-9 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 SMART SM00634 783 878 1.5E-8 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 SUPERFAMILY SSF49373 889 979 4.32E-24 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 PRINTS PR01369 Intimin signature 299 318 1.5E-10 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 PRINTS PR01369 Intimin signature 203 218 1.5E-10 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 PRINTS PR01369 Intimin signature 386 398 1.5E-10 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 PRINTS PR01369 Intimin signature 231 250 1.5E-10 T 12-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Gene3D G3DSA:2.60.40.10 781 880 5.5E-12 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Gene3D G3DSA:2.60.40.10 686 780 9.0E-20 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Gene3D G3DSA:2.60.40.10 581 677 8.6E-19 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Pfam PF02369 Bacterial Ig-like domain (group 1) 585 673 5.9E-13 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Pfam PF02369 Bacterial Ig-like domain (group 1) 697 775 2.1E-10 T 12-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 SUPERFAMILY SSF49373 693 781 1.41E-18 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 SUPERFAMILY SSF49373 792 878 9.61E-12 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Gene3D G3DSA:2.60.40.1080 896 979 4.2E-18 T 12-10-2018 YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 SUPERFAMILY SSF49373 461 576 3.14E-10 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Pfam PF09134 Invasin, domain 3 461 580 5.6E-18 T 12-10-2018 IPR015217 Invasin, domain 3 YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Pfam PF11924 Inverse autotransporter, beta-domain 77 351 1.3E-100 T 12-10-2018 IPR024519 Inverse autotransporter, beta-domain YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 SUPERFAMILY SSF49373 588 679 9.81E-20 T 12-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Gene3D G3DSA:2.40.160.160 114 358 1.9E-100 T 12-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily YPK_2513 171f8a39c208afc4f4ddd917ae0ec0bd 1075 Gene3D G3DSA:2.60.40.10 458 579 2.9E-18 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3931 831446878b1cf76dfd3f34ea1cc3d3d9 203 Gene3D G3DSA:3.30.70.240 135 203 2.8E-30 T 12-10-2018 YPK_3931 831446878b1cf76dfd3f34ea1cc3d3d9 203 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 200 1.1E-74 T 12-10-2018 IPR015796 Impact family, bacterial/archaeal YPK_3931 831446878b1cf76dfd3f34ea1cc3d3d9 203 SUPERFAMILY SSF54211 2 129 1.44E-42 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3931 831446878b1cf76dfd3f34ea1cc3d3d9 203 Pfam PF01205 Uncharacterized protein family UPF0029 18 125 9.1E-29 T 12-10-2018 IPR001498 Impact, N-terminal YPK_3931 831446878b1cf76dfd3f34ea1cc3d3d9 203 Gene3D G3DSA:3.30.230.30 1 134 1.1E-52 T 12-10-2018 IPR036956 Impact, N-terminal domain superfamily YPK_3931 831446878b1cf76dfd3f34ea1cc3d3d9 203 Pfam PF09186 Domain of unknown function (DUF1949) 141 195 8.4E-14 T 12-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal YPK_3931 831446878b1cf76dfd3f34ea1cc3d3d9 203 SUPERFAMILY SSF54980 136 201 1.44E-16 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_3931 831446878b1cf76dfd3f34ea1cc3d3d9 203 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 12-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site YPK_0708 28e74b167271a794b4652c5ad5ecc11a 299 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 225 284 1.7E-7 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) YPK_0708 28e74b167271a794b4652c5ad5ecc11a 299 SUPERFAMILY SSF101801 222 284 1.57E-6 T 12-10-2018 IPR036429 SpoA-like superfamily YPK_2071 e4b8c190c89f068c0873b26d8c06ad20 214 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 8 206 1.2E-78 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YPK_2071 e4b8c190c89f068c0873b26d8c06ad20 214 Pfam PF01914 MarC family integral membrane protein 10 210 7.7E-73 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YPK_3293 6c78c3397caa833d0385c56c34e23f75 534 SUPERFAMILY SSF81296 38 244 4.76E-39 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_3293 6c78c3397caa833d0385c56c34e23f75 534 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 38 241 1.3E-32 T 12-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal YPK_3293 6c78c3397caa833d0385c56c34e23f75 534 Gene3D G3DSA:2.60.40.10 359 448 1.1E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3293 6c78c3397caa833d0385c56c34e23f75 534 SUPERFAMILY SSF49299 364 450 1.96E-8 T 12-10-2018 IPR035986 PKD domain superfamily YPK_3293 6c78c3397caa833d0385c56c34e23f75 534 Gene3D G3DSA:2.70.50.50 38 246 9.7E-56 T 12-10-2018 YPK_3293 6c78c3397caa833d0385c56c34e23f75 534 SMART SM00089 367 451 2.8E-4 T 12-10-2018 IPR022409 PKD/Chitinase domain YPK_3321 c2ca1e8c4e711c86ac2f1eadf7b5ee21 222 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 11 199 3.0E-73 T 12-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 YPK_3321 c2ca1e8c4e711c86ac2f1eadf7b5ee21 222 Gene3D G3DSA:3.40.225.10 1 201 2.9E-50 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_3321 c2ca1e8c4e711c86ac2f1eadf7b5ee21 222 SUPERFAMILY SSF53639 3 199 1.75E-44 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_3321 c2ca1e8c4e711c86ac2f1eadf7b5ee21 222 SMART SM01007 8 196 5.2E-48 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_3321 c2ca1e8c4e711c86ac2f1eadf7b5ee21 222 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 204 121.935 T 12-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 YPK_3321 c2ca1e8c4e711c86ac2f1eadf7b5ee21 222 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 195 1.7E-40 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_0162 7e09b52b3ca94a00df9aaba71ccd4223 698 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 103 690 3.6E-243 T 12-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 YPK_0162 7e09b52b3ca94a00df9aaba71ccd4223 698 Gene3D G3DSA:3.20.20.80 144 689 5.8E-124 T 12-10-2018 YPK_0162 7e09b52b3ca94a00df9aaba71ccd4223 698 SUPERFAMILY SSF51445 145 687 2.05E-148 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0162 7e09b52b3ca94a00df9aaba71ccd4223 698 Pfam PF02446 4-alpha-glucanotransferase 151 669 2.8E-131 T 12-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 YPK_1708 4e678cc9f0e08174133ea2537369bc87 234 SUPERFAMILY SSF52540 6 226 7.48E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1708 4e678cc9f0e08174133ea2537369bc87 234 Gene3D G3DSA:3.40.50.300 4 230 3.3E-66 T 12-10-2018 YPK_1708 4e678cc9f0e08174133ea2537369bc87 234 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 6 225 1.5E-109 T 12-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 YPK_1708 4e678cc9f0e08174133ea2537369bc87 234 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1708 4e678cc9f0e08174133ea2537369bc87 234 SMART SM00382 35 230 6.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1708 4e678cc9f0e08174133ea2537369bc87 234 Pfam PF00005 ABC transporter 26 174 1.4E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 12-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 242 260 9.8E-72 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 87 111 9.8E-72 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 408 424 9.8E-72 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 147 176 9.8E-72 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 183 205 9.8E-72 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 267 283 9.8E-72 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 PRINTS PR00072 Malic enzyme signature 298 314 9.8E-72 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 2.2E-79 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 PIRSF PIRSF000106 3 563 4.6E-228 T 12-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 SUPERFAMILY SSF51735 271 562 5.63E-94 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2562 040fa337528b8e652c609859aca0e6ca 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 4.1E-101 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 Gene3D G3DSA:3.40.50.10380 18 268 2.2E-115 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 71.084 T 12-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 SMART SM01274 81 261 9.4E-110 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 Gene3D G3DSA:3.40.50.720 269 565 4.0E-108 T 12-10-2018 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 SUPERFAMILY SSF53223 6 270 4.89E-111 T 12-10-2018 YPK_2562 040fa337528b8e652c609859aca0e6ca 565 SMART SM00919 271 531 5.4E-133 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 YPK_0730 3d1bdca5d32885045d1d5e11df6727a5 201 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 118 135 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site YPK_0730 3d1bdca5d32885045d1d5e11df6727a5 201 Pfam PF01618 MotA/TolQ/ExbB proton channel family 51 149 6.8E-12 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel YPK_1890 3dbc9365b6e59ed26ac7fe7c4c818bff 296 Gene3D G3DSA:1.10.3720.10 85 293 3.4E-17 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1890 3dbc9365b6e59ed26ac7fe7c4c818bff 296 SUPERFAMILY SSF161098 90 277 6.28E-21 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1890 3dbc9365b6e59ed26ac7fe7c4c818bff 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 295 8.6E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1890 3dbc9365b6e59ed26ac7fe7c4c818bff 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 66 1.0E-6 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_0898 1ebddcd771e1110641249b3be7706e67 284 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 9 247 3.1E-38 T 12-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 YPK_0497 4ab295a4cb80c05ece8157dcdac214a5 158 Gene3D G3DSA:2.40.128.460 27 150 2.0E-33 T 12-10-2018 IPR038643 PliI superfamily YPK_0497 4ab295a4cb80c05ece8157dcdac214a5 158 SUPERFAMILY SSF69318 40 109 2.35E-7 T 12-10-2018 YPK_0497 4ab295a4cb80c05ece8157dcdac214a5 158 Pfam PF16743 Periplasmic lysozyme inhibitor of I-type lysozyme 25 147 4.7E-43 T 12-10-2018 IPR031948 Periplasmic lysozyme inhibitor, I-type YPK_1925 14235f9425580aea45a293c42b9af024 1295 SUPERFAMILY SSF52540 70 596 1.03E-109 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1925 14235f9425580aea45a293c42b9af024 1295 SMART SM00487 71 255 2.5E-26 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_1925 14235f9425580aea45a293c42b9af024 1295 SMART SM00382 88 380 4.8E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1925 14235f9425580aea45a293c42b9af024 1295 Pfam PF11898 Domain of unknown function (DUF3418) 708 1291 7.3E-237 T 12-10-2018 IPR024590 RNA helicase HrpA, C-terminal YPK_1925 14235f9425580aea45a293c42b9af024 1295 Gene3D G3DSA:3.40.50.300 249 417 1.5E-55 T 12-10-2018 YPK_1925 14235f9425580aea45a293c42b9af024 1295 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 10 1292 0.0 T 12-10-2018 IPR010222 RNA helicase HrpA GO:0004004 YPK_1925 14235f9425580aea45a293c42b9af024 1295 Pfam PF00270 DEAD/DEAH box helicase 82 229 5.9E-6 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_1925 14235f9425580aea45a293c42b9af024 1295 Pfam PF04408 Helicase associated domain (HA2) 462 552 3.0E-17 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 YPK_1925 14235f9425580aea45a293c42b9af024 1295 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 617 693 1.4E-18 T 12-10-2018 IPR011709 Domain of unknown function DUF1605 YPK_1925 14235f9425580aea45a293c42b9af024 1295 Gene3D G3DSA:3.40.50.300 24 248 2.5E-74 T 12-10-2018 YPK_1925 14235f9425580aea45a293c42b9af024 1295 SMART SM00847 460 554 5.0E-36 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 YPK_1925 14235f9425580aea45a293c42b9af024 1295 Pfam PF00271 Helicase conserved C-terminal domain 282 399 2.0E-11 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_1925 14235f9425580aea45a293c42b9af024 1295 Gene3D G3DSA:1.20.120.1080 445 546 3.6E-19 T 12-10-2018 YPK_1925 14235f9425580aea45a293c42b9af024 1295 SMART SM00490 301 400 2.1E-15 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_1685 3f2316e9b5de2dffc20c33e578d343f1 309 SUPERFAMILY SSF55048 128 197 4.97E-18 T 12-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YPK_1685 3f2316e9b5de2dffc20c33e578d343f1 309 Gene3D G3DSA:3.30.70.250 125 197 1.5E-107 T 12-10-2018 YPK_1685 3f2316e9b5de2dffc20c33e578d343f1 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 7.2E-129 T 12-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 YPK_1685 3f2316e9b5de2dffc20c33e578d343f1 309 PIRSF PIRSF000446 1 309 1.8E-138 T 12-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 YPK_1685 3f2316e9b5de2dffc20c33e578d343f1 309 Pfam PF00698 Acyl transferase domain 7 298 1.2E-36 T 12-10-2018 IPR014043 Acyl transferase YPK_1685 3f2316e9b5de2dffc20c33e578d343f1 309 SUPERFAMILY SSF52151 4 307 1.41E-79 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPK_1685 3f2316e9b5de2dffc20c33e578d343f1 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 307 1.9E-39 T 12-10-2018 IPR020801 Polyketide synthase, acyl transferase domain YPK_1685 3f2316e9b5de2dffc20c33e578d343f1 309 Gene3D G3DSA:3.40.366.10 6 286 1.5E-107 T 12-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 YPK_2616 2e3d4b28427266925883da8e49bdd4f1 95 SUPERFAMILY SSF53098 1 67 7.59E-7 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_2616 2e3d4b28427266925883da8e49bdd4f1 95 Pfam PF13610 DDE domain 1 85 6.9E-29 T 12-10-2018 IPR032874 DDE domain YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 Pfam PF00664 ABC transporter transmembrane region 178 443 5.7E-46 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 Gene3D G3DSA:3.90.70.10 10 158 7.0E-40 T 12-10-2018 YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 ProSitePatterns PS00211 ABC transporters family signature. 630 644 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 Gene3D G3DSA:1.20.1560.10 163 478 6.0E-64 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 Pfam PF00005 ABC transporter 510 658 8.2E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 SUPERFAMILY SSF90123 166 473 3.66E-58 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 SUPERFAMILY SSF52540 489 700 1.14E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 Pfam PF03412 Peptidase C39 family 21 149 1.9E-35 T 12-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 Gene3D G3DSA:3.40.50.300 487 704 2.2E-68 T 12-10-2018 YPK_4110 feaf9b7355686e8dddfbb3b453f89c1f 704 SMART SM00382 518 702 2.2E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3733 eeadc499a3b9216b868633da475b3d44 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.7E-41 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YPK_3733 eeadc499a3b9216b868633da475b3d44 111 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.7E-41 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YPK_3733 eeadc499a3b9216b868633da475b3d44 111 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.7E-41 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YPK_3733 eeadc499a3b9216b868633da475b3d44 111 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.7E-41 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YPK_3733 eeadc499a3b9216b868633da475b3d44 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 4.5E-26 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YPK_3733 eeadc499a3b9216b868633da475b3d44 111 Pfam PF03840 Preprotein translocase SecG subunit 5 72 9.2E-22 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 YPK_1719 d77ce8c2a30afceac3c53d8bab2f3371 208 SUPERFAMILY SSF101322 2 207 2.88E-82 T 12-10-2018 IPR035932 HflD-like superfamily YPK_1719 d77ce8c2a30afceac3c53d8bab2f3371 208 Gene3D G3DSA:1.10.3890.10 1 208 4.9E-80 T 12-10-2018 IPR035932 HflD-like superfamily YPK_1719 d77ce8c2a30afceac3c53d8bab2f3371 208 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 197 4.0E-105 T 12-10-2018 YPK_1719 d77ce8c2a30afceac3c53d8bab2f3371 208 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 206 36.962 T 12-10-2018 IPR007451 High frequency lysogenization protein HflD YPK_1719 d77ce8c2a30afceac3c53d8bab2f3371 208 Pfam PF04356 Protein of unknown function (DUF489) 7 198 2.1E-77 T 12-10-2018 IPR007451 High frequency lysogenization protein HflD YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 Gene3D G3DSA:2.40.50.100 289 350 6.0E-15 T 12-10-2018 YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 SMART SM00382 23 206 1.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 350 2.8E-152 T 12-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 SUPERFAMILY SSF52540 7 221 3.72E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 Pfam PF03459 TOBE domain 290 349 7.8E-17 T 12-10-2018 IPR005116 Transport-associated OB, type 1 YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 SUPERFAMILY SSF50331 235 350 1.04E-23 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 Pfam PF00005 ABC transporter 17 156 2.1E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 Gene3D G3DSA:3.40.50.300 10 229 2.9E-54 T 12-10-2018 YPK_2935 7d59da2769cdb89eceaec6c7f8092ff1 359 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 290 349 6.3E-17 T 12-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 11 258 8.1E-92 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 Hamap MF_00186 Glycerol kinase [glpK]. 9 503 60.09 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 Gene3D G3DSA:3.30.420.40 7 259 3.7E-116 T 12-10-2018 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 SUPERFAMILY SSF53067 10 261 3.89E-96 T 12-10-2018 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 368 388 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 Gene3D G3DSA:3.30.420.40 260 506 1.3E-95 T 12-10-2018 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 SUPERFAMILY SSF53067 261 503 2.96E-86 T 12-10-2018 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 PIRSF PIRSF000538 9 507 3.5E-180 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 267 456 8.3E-63 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 10 502 7.9E-230 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 YPK_4113 12ab2473351bd8b2730eb7165c727c5e 507 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 141 153 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_3581 3bed4f3714d9a1b62aa610d9554570b4 222 PIRSF PIRSF006324 17 222 1.3E-58 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YPK_3581 3bed4f3714d9a1b62aa610d9554570b4 222 Pfam PF01810 LysE type translocator 33 221 1.5E-37 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YPK_2415 e55651cdf8800a3b40f4aa23bfb59ece 326 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 139 5.8E-24 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YPK_2415 e55651cdf8800a3b40f4aa23bfb59ece 326 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 198 1.1E-72 T 12-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 YPK_2415 e55651cdf8800a3b40f4aa23bfb59ece 326 SUPERFAMILY SSF64518 2 324 2.48E-59 T 12-10-2018 YPK_2415 e55651cdf8800a3b40f4aa23bfb59ece 326 Gene3D G3DSA:1.20.1330.10 40 272 4.2E-67 T 12-10-2018 YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 Gene3D G3DSA:2.60.40.10 152 243 1.4E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 Gene3D G3DSA:2.60.40.10 28 149 2.0E-38 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 SUPERFAMILY SSF49354 21 148 4.19E-38 T 12-10-2018 IPR008962 PapD-like superfamily YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 PRINTS PR00969 Pili chaperone signature 168 183 2.8E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 PRINTS PR00969 Pili chaperone signature 76 97 2.8E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 PRINTS PR00969 Pili chaperone signature 130 145 2.8E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 PRINTS PR00969 Pili chaperone signature 104 121 2.8E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 PRINTS PR00969 Pili chaperone signature 27 36 2.8E-27 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 SUPERFAMILY SSF49584 166 241 3.66E-13 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 149 4.2E-39 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_2273 bac4321dbdf5d593d673558d4e2498fb 243 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 173 236 1.6E-12 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_2963 0d8aad14b395aa6cfda647c91a42682b 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 4.3E-110 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 YPK_2963 0d8aad14b395aa6cfda647c91a42682b 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 1.3E-192 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 YPK_2963 0d8aad14b395aa6cfda647c91a42682b 379 PIRSF PIRSF000267 2 378 6.5E-132 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 YPK_1282 3f1acae0c03d6c2c75336c06528ff002 66 PIRSF PIRSF039003 3 66 1.2E-32 T 12-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 YPK_1282 3f1acae0c03d6c2c75336c06528ff002 66 Gene3D G3DSA:1.10.10.600 1 66 2.9E-31 T 12-10-2018 IPR036762 IscX-like superfamily YPK_1282 3f1acae0c03d6c2c75336c06528ff002 66 SUPERFAMILY SSF140319 3 64 4.84E-27 T 12-10-2018 IPR036762 IscX-like superfamily YPK_1282 3f1acae0c03d6c2c75336c06528ff002 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 1.6E-32 T 12-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 YPK_1282 3f1acae0c03d6c2c75336c06528ff002 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 1.0E-33 T 12-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 YPK_1692 91da0ff5075e9e7b233ee25d94e8860c 340 Pfam PF13177 DNA polymerase III, delta subunit 9 161 6.9E-41 T 12-10-2018 YPK_1692 91da0ff5075e9e7b233ee25d94e8860c 340 SUPERFAMILY SSF48019 213 334 2.38E-36 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 YPK_1692 91da0ff5075e9e7b233ee25d94e8860c 340 Gene3D G3DSA:3.40.50.300 1 166 7.5E-49 T 12-10-2018 YPK_1692 91da0ff5075e9e7b233ee25d94e8860c 340 SUPERFAMILY SSF52540 1 211 7.18E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1692 91da0ff5075e9e7b233ee25d94e8860c 340 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 12 205 7.0E-63 T 12-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_1692 91da0ff5075e9e7b233ee25d94e8860c 340 Gene3D G3DSA:1.20.272.10 213 335 2.7E-42 T 12-10-2018 YPK_1692 91da0ff5075e9e7b233ee25d94e8860c 340 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 212 326 2.5E-41 T 12-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 Gene3D G3DSA:3.40.50.720 6 330 2.3E-127 T 12-10-2018 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 12-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 SUPERFAMILY SSF51735 2 182 2.82E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 3.4E-14 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 Gene3D G3DSA:3.30.360.10 153 312 2.3E-127 T 12-10-2018 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 2.4E-127 T 12-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 39.922 T 12-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 SMART SM00859 3 146 1.6E-53 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 SUPERFAMILY SSF55347 154 308 3.18E-49 T 12-10-2018 YPK_4089 890d821dbc300796fe9cb5e6d9bf184b 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 146 2.6E-33 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 Gene3D G3DSA:3.30.390.30 345 464 2.7E-32 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 5.4E-30 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 Gene3D G3DSA:3.50.50.60 7 332 6.3E-95 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 3.7E-52 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 Gene3D G3DSA:3.50.50.60 158 276 6.3E-95 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 7.5E-27 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 7.5E-27 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 7.5E-27 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 7.5E-27 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 7.5E-27 T 12-10-2018 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 SUPERFAMILY SSF55424 345 463 2.06E-30 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 PIRSF PIRSF000350 1 463 1.4E-71 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 326 1.4E-59 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 66.793 T 12-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 YPK_4078 b575532597b8ef84ae3f564c1c9bbd41 466 SUPERFAMILY SSF51905 1 322 1.04E-57 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1797 dcc9804cae67d267a0e52903a019583d 236 Gene3D G3DSA:2.40.160.40 25 236 4.9E-76 T 12-10-2018 YPK_1797 dcc9804cae67d267a0e52903a019583d 236 SUPERFAMILY SSF56935 54 236 3.14E-12 T 12-10-2018 YPK_1797 dcc9804cae67d267a0e52903a019583d 236 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 19 236 1.7E-75 T 12-10-2018 IPR009331 Oligogalacturonate-specific porin YPK_3454 5f2c0311489429bda84b944e862af71e 233 Gene3D G3DSA:3.40.50.1580 1 232 6.7E-67 T 12-10-2018 YPK_3454 5f2c0311489429bda84b944e862af71e 233 Pfam PF01048 Phosphorylase superfamily 2 226 1.5E-45 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YPK_3454 5f2c0311489429bda84b944e862af71e 233 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 46.74 T 12-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_3454 5f2c0311489429bda84b944e862af71e 233 SUPERFAMILY SSF53167 1 229 2.75E-73 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YPK_3454 5f2c0311489429bda84b944e862af71e 233 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 227 1.6E-113 T 12-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 YPK_2744 f93fea40bddad02dbce78cca38074604 355 SUPERFAMILY SSF51197 16 305 1.24E-81 T 12-10-2018 YPK_2744 f93fea40bddad02dbce78cca38074604 355 Gene3D G3DSA:2.60.120.330 13 337 1.4E-84 T 12-10-2018 IPR027443 Isopenicillin N synthase-like YPK_2744 f93fea40bddad02dbce78cca38074604 355 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 197 293 9.9E-17 T 12-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 YPK_2744 f93fea40bddad02dbce78cca38074604 355 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 25 148 7.5E-36 T 12-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain YPK_2744 f93fea40bddad02dbce78cca38074604 355 PRINTS PR00682 Isopenicillin N synthase signature 47 64 3.8E-11 T 12-10-2018 YPK_2744 f93fea40bddad02dbce78cca38074604 355 PRINTS PR00682 Isopenicillin N synthase signature 254 280 3.8E-11 T 12-10-2018 YPK_2744 f93fea40bddad02dbce78cca38074604 355 PRINTS PR00682 Isopenicillin N synthase signature 218 239 3.8E-11 T 12-10-2018 YPK_2013 7dc742e021525d1baa49877e6b771802 213 SMART SM00478 38 185 1.4E-54 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YPK_2013 7dc742e021525d1baa49877e6b771802 213 Gene3D G3DSA:1.10.1670.10 11 203 8.1E-79 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 YPK_2013 7dc742e021525d1baa49877e6b771802 213 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.7E-7 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 YPK_2013 7dc742e021525d1baa49877e6b771802 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 12-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 YPK_2013 7dc742e021525d1baa49877e6b771802 213 Gene3D G3DSA:1.10.340.30 21 132 8.1E-79 T 12-10-2018 YPK_2013 7dc742e021525d1baa49877e6b771802 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.265 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 YPK_2013 7dc742e021525d1baa49877e6b771802 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 12-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 YPK_2013 7dc742e021525d1baa49877e6b771802 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 4.0E-21 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YPK_2013 7dc742e021525d1baa49877e6b771802 213 SUPERFAMILY SSF48150 2 207 8.01E-74 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 YPK_2013 7dc742e021525d1baa49877e6b771802 213 PIRSF PIRSF001435 1 211 6.1E-52 T 12-10-2018 YPK_2013 7dc742e021525d1baa49877e6b771802 213 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.4E-88 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 YPK_2013 7dc742e021525d1baa49877e6b771802 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 YPK_2013 7dc742e021525d1baa49877e6b771802 213 SMART SM00525 186 206 4.4E-5 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 YPK_2307 6f0bfc2da20d630a50f3e107cceed8eb 335 Pfam PF00589 Phage integrase family 170 315 1.9E-20 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_2307 6f0bfc2da20d630a50f3e107cceed8eb 335 SUPERFAMILY SSF56349 59 323 2.24E-44 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_2307 6f0bfc2da20d630a50f3e107cceed8eb 335 Gene3D G3DSA:1.10.443.10 166 332 6.8E-48 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_2325 a9231916d8e20203001ace3fe1687020 343 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 51 329 4.3E-76 T 12-10-2018 IPR006430 Phage portal protein PBSX family YPK_2325 a9231916d8e20203001ace3fe1687020 343 PIRSF PIRSF018494 1 343 1.5E-161 T 12-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria YPK_2325 a9231916d8e20203001ace3fe1687020 343 Pfam PF04860 Phage portal protein 100 320 7.9E-9 T 12-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein YPK_3017 4a7058844bf40f257f761f6ab510fb20 344 SUPERFAMILY SSF52540 1 210 1.1E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3017 4a7058844bf40f257f761f6ab510fb20 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 8.9E-102 T 12-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 YPK_3017 4a7058844bf40f257f761f6ab510fb20 344 Gene3D G3DSA:3.40.50.300 1 140 5.1E-48 T 12-10-2018 YPK_3017 4a7058844bf40f257f761f6ab510fb20 344 SUPERFAMILY SSF48019 212 335 4.93E-36 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 YPK_3017 4a7058844bf40f257f761f6ab510fb20 344 Pfam PF06144 DNA polymerase III, delta subunit 21 190 3.1E-44 T 12-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 YPK_3017 4a7058844bf40f257f761f6ab510fb20 344 Gene3D G3DSA:1.10.8.60 143 213 1.7E-26 T 12-10-2018 YPK_3017 4a7058844bf40f257f761f6ab510fb20 344 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 337 9.4E-64 T 12-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_3017 4a7058844bf40f257f761f6ab510fb20 344 Gene3D G3DSA:1.20.272.10 214 343 2.0E-48 T 12-10-2018 YPK_1790 203ee455215c895b441108876f4efd81 267 Gene3D G3DSA:2.60.40.10 170 267 4.1E-14 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1790 203ee455215c895b441108876f4efd81 267 SUPERFAMILY SSF49354 34 166 3.14E-36 T 12-10-2018 IPR008962 PapD-like superfamily YPK_1790 203ee455215c895b441108876f4efd81 267 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 192 258 8.0E-12 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_1790 203ee455215c895b441108876f4efd81 267 Gene3D G3DSA:2.60.40.10 42 166 4.0E-38 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1790 203ee455215c895b441108876f4efd81 267 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 39 166 2.5E-39 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_1790 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 40 49 3.4E-30 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1790 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 187 202 3.4E-30 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1790 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 121 138 3.4E-30 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1790 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 148 163 3.4E-30 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1790 203ee455215c895b441108876f4efd81 267 PRINTS PR00969 Pili chaperone signature 91 112 3.4E-30 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1790 203ee455215c895b441108876f4efd81 267 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 120 137 - T 12-10-2018 IPR018046 Pili assembly chaperone, conserved site YPK_1790 203ee455215c895b441108876f4efd81 267 SUPERFAMILY SSF49584 160 262 1.07E-11 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_0332 6722da5c5b244a10848ad71305d92091 394 SUPERFAMILY SSF50447 205 301 1.75E-30 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_0332 6722da5c5b244a10848ad71305d92091 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.4E-14 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_0332 6722da5c5b244a10848ad71305d92091 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 2.7E-59 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0332 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0332 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0332 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0332 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0332 6722da5c5b244a10848ad71305d92091 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_0332 6722da5c5b244a10848ad71305d92091 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.0E-17 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YPK_0332 6722da5c5b244a10848ad71305d92091 394 Gene3D G3DSA:2.40.30.10 206 334 5.6E-52 T 12-10-2018 YPK_0332 6722da5c5b244a10848ad71305d92091 394 Gene3D G3DSA:2.40.30.10 338 393 8.9E-29 T 12-10-2018 YPK_0332 6722da5c5b244a10848ad71305d92091 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.4E-33 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YPK_0332 6722da5c5b244a10848ad71305d92091 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site YPK_0332 6722da5c5b244a10848ad71305d92091 394 SUPERFAMILY SSF50465 298 393 1.78E-35 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YPK_0332 6722da5c5b244a10848ad71305d92091 394 SUPERFAMILY SSF52540 6 219 8.65E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0332 6722da5c5b244a10848ad71305d92091 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.224 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_0332 6722da5c5b244a10848ad71305d92091 394 Gene3D G3DSA:3.40.50.300 1 203 1.6E-71 T 12-10-2018 YPK_0332 6722da5c5b244a10848ad71305d92091 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 1.2E-237 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 YPK_4145 ca9de5a63958c6db9f22191bfd914379 403 Pfam PF00155 Aminotransferase class I and II 48 392 7.9E-79 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_4145 ca9de5a63958c6db9f22191bfd914379 403 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 10 402 1.1E-216 T 12-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 YPK_4145 ca9de5a63958c6db9f22191bfd914379 403 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 7 400 53.471 T 12-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 YPK_4145 ca9de5a63958c6db9f22191bfd914379 403 Gene3D G3DSA:3.90.1150.10 43 393 3.5E-140 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_4145 ca9de5a63958c6db9f22191bfd914379 403 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 246 255 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 YPK_4145 ca9de5a63958c6db9f22191bfd914379 403 Gene3D G3DSA:3.40.640.10 63 301 3.5E-140 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_4145 ca9de5a63958c6db9f22191bfd914379 403 SUPERFAMILY SSF53383 9 401 8.64E-127 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0544 c2581e6f8c711b661f0875c22a24ff5e 131 Pfam PF07681 DoxX 8 88 2.3E-16 T 12-10-2018 IPR032808 DoxX family YPK_1517 8fe627477433e24ffc031e6718edb50b 180 Pfam PF04315 Elongation factor P hydroxylase 11 169 3.0E-79 T 12-10-2018 IPR007411 Elongation factor P hydroxylase YPK_4153 05af4319c94097504f8cddb53d47f552 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 12-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_4153 05af4319c94097504f8cddb53d47f552 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.908 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4153 05af4319c94097504f8cddb53d47f552 55 Gene3D G3DSA:2.20.28.120 1 55 2.0E-31 T 12-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4153 05af4319c94097504f8cddb53d47f552 55 SUPERFAMILY SSF57829 1 53 2.87E-20 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 YPK_4153 05af4319c94097504f8cddb53d47f552 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.3E-27 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4153 05af4319c94097504f8cddb53d47f552 55 Pfam PF00471 Ribosomal protein L33 7 53 7.3E-19 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_2728 44f3e868e858502eed11a40b04bdd665 321 Gene3D G3DSA:1.10.3720.10 32 316 1.5E-54 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2728 44f3e868e858502eed11a40b04bdd665 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 317 5.7E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2728 44f3e868e858502eed11a40b04bdd665 321 SUPERFAMILY SSF161098 33 312 4.49E-56 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2568 70e9f5f46b991fa4175c8b0fd70bd1d9 220 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 218 9.4E-85 T 12-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YPK_2568 70e9f5f46b991fa4175c8b0fd70bd1d9 220 Gene3D G3DSA:1.10.286.10 1 84 1.0E-39 T 12-10-2018 YPK_2568 70e9f5f46b991fa4175c8b0fd70bd1d9 220 Gene3D G3DSA:3.30.1130.10 85 220 3.2E-54 T 12-10-2018 YPK_2568 70e9f5f46b991fa4175c8b0fd70bd1d9 220 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 12-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YPK_2568 70e9f5f46b991fa4175c8b0fd70bd1d9 220 SUPERFAMILY SSF55620 5 219 1.85E-74 T 12-10-2018 YPK_2568 70e9f5f46b991fa4175c8b0fd70bd1d9 220 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 12-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YPK_2568 70e9f5f46b991fa4175c8b0fd70bd1d9 220 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 33.834 T 12-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YPK_2568 70e9f5f46b991fa4175c8b0fd70bd1d9 220 Pfam PF01227 GTP cyclohydrolase I 38 216 3.7E-63 T 12-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 YPK_2763 02c1d9f8b0894d3f1fe0f3d4a008d985 312 PIRSF PIRSF000535 2 311 3.1E-114 T 12-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 YPK_2763 02c1d9f8b0894d3f1fe0f3d4a008d985 312 Gene3D G3DSA:3.40.1190.20 2 310 2.7E-90 T 12-10-2018 IPR029056 Ribokinase-like YPK_2763 02c1d9f8b0894d3f1fe0f3d4a008d985 312 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YPK_2763 02c1d9f8b0894d3f1fe0f3d4a008d985 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YPK_2763 02c1d9f8b0894d3f1fe0f3d4a008d985 312 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 9.3E-100 T 12-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 YPK_2763 02c1d9f8b0894d3f1fe0f3d4a008d985 312 SUPERFAMILY SSF53613 7 306 8.89E-66 T 12-10-2018 IPR029056 Ribokinase-like YPK_2763 02c1d9f8b0894d3f1fe0f3d4a008d985 312 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 5.8E-98 T 12-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 YPK_2763 02c1d9f8b0894d3f1fe0f3d4a008d985 312 Pfam PF00294 pfkB family carbohydrate kinase 14 293 4.0E-62 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_1937 5fd5828b9ae138544e8d9fe279e9bc31 248 Gene3D G3DSA:1.10.10.10 129 246 4.1E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1937 5fd5828b9ae138544e8d9fe279e9bc31 248 SUPERFAMILY SSF52172 2 127 3.42E-31 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1937 5fd5828b9ae138544e8d9fe279e9bc31 248 SUPERFAMILY SSF46894 145 240 1.22E-24 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1937 5fd5828b9ae138544e8d9fe279e9bc31 248 Pfam PF00072 Response regulator receiver domain 4 112 1.7E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1937 5fd5828b9ae138544e8d9fe279e9bc31 248 Gene3D G3DSA:3.40.50.2300 1 119 5.0E-28 T 12-10-2018 YPK_1937 5fd5828b9ae138544e8d9fe279e9bc31 248 Pfam PF00486 Transcriptional regulatory protein, C terminal 164 239 2.3E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1937 5fd5828b9ae138544e8d9fe279e9bc31 248 SMART SM00862 163 239 3.1E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1937 5fd5828b9ae138544e8d9fe279e9bc31 248 SMART SM00448 2 112 6.8E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1534 1ad16b1a4c89ff512c3f156bd7f258ab 169 Pfam PF02674 Colicin V production protein 4 142 3.0E-36 T 12-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 YPK_0717 22b26f8fc8c2014a1657791713cd3e3a 88 Pfam PF04316 Anti-sigma-28 factor, FlgM 45 84 7.2E-6 T 12-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YPK_0717 22b26f8fc8c2014a1657791713cd3e3a 88 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 86 7.6E-14 T 12-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 YPK_0717 22b26f8fc8c2014a1657791713cd3e3a 88 SUPERFAMILY SSF101498 42 85 6.02E-7 T 12-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily YPK_0955 ca049440be2a2d8a76da24b22d92319b 94 Gene3D G3DSA:1.20.120.650 1 89 2.6E-20 T 12-10-2018 IPR036471 Colicin D superfamily YPK_0955 ca049440be2a2d8a76da24b22d92319b 94 Pfam PF09204 Bacterial self-protective colicin-like immunity 1 87 1.8E-34 T 12-10-2018 IPR015287 Colicin D immunity protein domain GO:0015643|GO:0030153 YPK_0955 ca049440be2a2d8a76da24b22d92319b 94 SUPERFAMILY SSF101125 2 89 2.35E-36 T 12-10-2018 IPR036471 Colicin D superfamily YPK_0591 410c860a7e7bdf0a6c1ea5dbae9af44d 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 264 5.0E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0591 410c860a7e7bdf0a6c1ea5dbae9af44d 272 SUPERFAMILY SSF161098 6 267 1.96E-67 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0591 410c860a7e7bdf0a6c1ea5dbae9af44d 272 Gene3D G3DSA:1.10.3720.10 3 264 3.6E-66 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3886 aa9b71e06b743ffa0f2a8b81b6a0ecd8 187 Pfam PF06228 Haem utilisation ChuX/HutX 40 174 7.8E-34 T 12-10-2018 IPR010413 Heme utilization carrier protein HutX-like YPK_3886 aa9b71e06b743ffa0f2a8b81b6a0ecd8 187 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 24 174 9.7E-65 T 12-10-2018 IPR010413 Heme utilization carrier protein HutX-like YPK_3886 aa9b71e06b743ffa0f2a8b81b6a0ecd8 187 PIRSF PIRSF030840 1 180 4.9E-94 T 12-10-2018 IPR010413 Heme utilization carrier protein HutX-like YPK_3886 aa9b71e06b743ffa0f2a8b81b6a0ecd8 187 Gene3D G3DSA:3.40.1570.10 3 183 2.3E-59 T 12-10-2018 YPK_3886 aa9b71e06b743ffa0f2a8b81b6a0ecd8 187 SUPERFAMILY SSF144064 10 178 5.89E-53 T 12-10-2018 YPK_1824 fe1e10c304967e732d3ff057ff1fda42 327 Gene3D G3DSA:3.30.930.10 8 327 8.7E-125 T 12-10-2018 YPK_1824 fe1e10c304967e732d3ff057ff1fda42 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 5.5E-107 T 12-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 YPK_1824 fe1e10c304967e732d3ff057ff1fda42 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 327 1.4E-117 T 12-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 YPK_1824 fe1e10c304967e732d3ff057ff1fda42 327 SUPERFAMILY SSF46589 14 99 8.37E-22 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 YPK_1824 fe1e10c304967e732d3ff057ff1fda42 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.807 T 12-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 YPK_1824 fe1e10c304967e732d3ff057ff1fda42 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 19 87 1.2E-25 T 12-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 YPK_1824 fe1e10c304967e732d3ff057ff1fda42 327 SUPERFAMILY SSF55681 92 327 2.7E-81 T 12-10-2018 YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 SUPERFAMILY SSF55326 220 427 4.19E-64 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 SUPERFAMILY SSF109736 154 219 2.22E-21 T 12-10-2018 YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 SUPERFAMILY SSF52317 1036 1294 4.17E-97 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Gene3D G3DSA:3.40.50.880 982 1296 1.5E-139 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 SUPERFAMILY SSF56042 822 1033 2.84E-54 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Gene3D G3DSA:3.90.650.10 808 981 5.0E-27 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 SUPERFAMILY SSF82697 1 151 8.37E-53 T 12-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 SUPERFAMILY SSF56042 430 614 1.09E-52 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Gene3D G3DSA:1.10.8.750 152 212 1.3E-28 T 12-10-2018 YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Gene3D G3DSA:3.90.650.10 419 605 1.8E-57 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1294 0.0 T 12-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 835 966 4.8E-13 T 12-10-2018 IPR010918 PurM-like, C-terminal domain YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 431 584 6.0E-26 T 12-10-2018 IPR010918 PurM-like, C-terminal domain YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Gene3D G3DSA:3.30.1330.10 213 418 7.7E-43 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 SUPERFAMILY SSF55326 618 815 3.66E-66 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1040 1293 7.0E-103 T 12-10-2018 YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Gene3D G3DSA:3.30.1330.10 614 807 4.9E-24 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 SMART SM01211 1040 1295 8.8E-156 T 12-10-2018 YPK_1253 d6db109631a983a775da4b7132b1ef47 1296 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1296 21.379 T 12-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_1389 d9cbb0d87a41874849583ea47ba6194c 199 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 10 193 1.9E-105 T 12-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 YPK_1389 d9cbb0d87a41874849583ea47ba6194c 199 SUPERFAMILY SSF48695 16 195 5.06E-64 T 12-10-2018 IPR036280 Multiheme cytochrome superfamily YPK_1389 d9cbb0d87a41874849583ea47ba6194c 199 PIRSF PIRSF000013 1 199 2.7E-109 T 12-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 YPK_1389 d9cbb0d87a41874849583ea47ba6194c 199 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 21 192 2.7E-79 T 12-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal YPK_1389 d9cbb0d87a41874849583ea47ba6194c 199 Gene3D G3DSA:1.10.3820.10 18 195 1.8E-40 T 12-10-2018 IPR038266 NapC/NirT cytochrome c superfamily YPK_2634 dfa32c2a6fcbac2caca02b42d207916e 208 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 40 208 6.0E-93 T 12-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_2634 dfa32c2a6fcbac2caca02b42d207916e 208 SUPERFAMILY SSF54637 39 205 9.94E-56 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_2634 dfa32c2a6fcbac2caca02b42d207916e 208 Gene3D G3DSA:3.10.129.10 34 208 1.1E-64 T 12-10-2018 YPK_2634 dfa32c2a6fcbac2caca02b42d207916e 208 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 38 208 51.068 T 12-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_2634 dfa32c2a6fcbac2caca02b42d207916e 208 Pfam PF07977 FabA-like domain 65 194 2.8E-52 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 SUPERFAMILY SSF53613 5 306 6.86E-86 T 12-10-2018 IPR029056 Ribokinase-like YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 Pfam PF00294 pfkB family carbohydrate kinase 5 296 9.7E-78 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 Hamap MF_01987 Ribokinase [rbsK]. 4 303 26.435 T 12-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 PRINTS PR00990 Ribokinase signature 35 54 2.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 PRINTS PR00990 Ribokinase signature 175 190 2.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 PRINTS PR00990 Ribokinase signature 219 230 2.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 PRINTS PR00990 Ribokinase signature 8 29 2.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 PRINTS PR00990 Ribokinase signature 107 120 2.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 7 301 7.1E-113 T 12-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 YPK_4209 581888a00ba3acf866686cd56c9c00f0 308 Gene3D G3DSA:3.40.1190.20 3 302 3.0E-104 T 12-10-2018 IPR029056 Ribokinase-like YPK_0071 58caa5f414df1cdfff0210e65aabd45a 317 Gene3D G3DSA:3.40.50.1980 45 304 5.3E-91 T 12-10-2018 YPK_0071 58caa5f414df1cdfff0210e65aabd45a 317 SUPERFAMILY SSF53807 30 296 2.28E-65 T 12-10-2018 YPK_0071 58caa5f414df1cdfff0210e65aabd45a 317 Gene3D G3DSA:3.40.50.12260 182 287 5.3E-91 T 12-10-2018 YPK_0071 58caa5f414df1cdfff0210e65aabd45a 317 Pfam PF01497 Periplasmic binding protein 52 287 4.0E-31 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_2865 93709ee9d482dfef5209e792997d8f01 310 Gene3D G3DSA:3.40.190.120 133 246 5.9E-96 T 12-10-2018 YPK_2865 93709ee9d482dfef5209e792997d8f01 310 SUPERFAMILY SSF53850 29 308 4.89E-60 T 12-10-2018 YPK_2865 93709ee9d482dfef5209e792997d8f01 310 Gene3D G3DSA:3.40.190.10 32 306 5.9E-96 T 12-10-2018 YPK_2865 93709ee9d482dfef5209e792997d8f01 310 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 30 303 1.4E-54 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 YPK_0833 4ed350e09e1b9468faab3083d816ffda 374 Gene3D G3DSA:3.40.50.300 144 374 5.4E-88 T 12-10-2018 YPK_0833 4ed350e09e1b9468faab3083d816ffda 374 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 46 371 1.5E-130 T 12-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 YPK_0833 4ed350e09e1b9468faab3083d816ffda 374 SMART SM00382 163 288 0.0088 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0833 4ed350e09e1b9468faab3083d816ffda 374 SUPERFAMILY SSF52540 25 369 1.85E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0833 4ed350e09e1b9468faab3083d816ffda 374 Pfam PF00437 Type II/IV secretion system protein 96 312 9.9E-41 T 12-10-2018 IPR001482 Type II/IV secretion system protein YPK_0833 4ed350e09e1b9468faab3083d816ffda 374 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 234 248 - T 12-10-2018 IPR001482 Type II/IV secretion system protein YPK_0833 4ed350e09e1b9468faab3083d816ffda 374 Gene3D G3DSA:3.30.450.90 34 141 2.9E-25 T 12-10-2018 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 SUPERFAMILY SSF55120 95 311 3.36E-63 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 Gene3D G3DSA:3.10.290.10 7 76 4.1E-16 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 Pfam PF00849 RNA pseudouridylate synthase 102 249 2.2E-30 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 Pfam PF01479 S4 domain 20 66 2.3E-9 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 SUPERFAMILY SSF55174 19 70 2.21E-8 T 12-10-2018 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 140 154 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 314 4.0E-92 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 SMART SM00363 20 79 2.7E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_1678 c41f60a5d47403a09bc02adc83669704 320 Gene3D G3DSA:3.30.2350.10 92 317 8.0E-84 T 12-10-2018 YPK_2053 7a59cf57c1a553702523c5e5c7e4156d 180 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.59 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 YPK_2053 7a59cf57c1a553702523c5e5c7e4156d 180 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 178 1.9E-71 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 YPK_2053 7a59cf57c1a553702523c5e5c7e4156d 180 Pfam PF04279 Intracellular septation protein A 1 175 1.8E-71 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 Gene3D G3DSA:1.10.260.40 3 64 1.3E-23 T 12-10-2018 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 Gene3D G3DSA:3.40.50.2300 80 322 1.0E-64 T 12-10-2018 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 1.3E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 1.3E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 Pfam PF13377 Periplasmic binding protein-like domain 173 331 3.1E-32 T 12-10-2018 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 Gene3D G3DSA:3.40.50.2300 164 326 1.0E-64 T 12-10-2018 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 12-10-2018 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 SMART SM00354 5 75 2.1E-26 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 SUPERFAMILY SSF53822 62 325 5.6E-51 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0976 22c31d849143f22eff8b83af9303fe58 357 SUPERFAMILY SSF47413 5 63 3.66E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0976 22c31d849143f22eff8b83af9303fe58 357 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 2.4E-18 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_2241 52944658375968a9e27650414ae886b2 824 SUPERFAMILY SSF48452 104 221 2.85E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2241 52944658375968a9e27650414ae886b2 824 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 17 824 0.0 T 12-10-2018 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:1901515 YPK_2241 52944658375968a9e27650414ae886b2 824 Gene3D G3DSA:1.25.40.10 19 298 7.1E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_0093 07c5e4c90e8754c060deb584e425cbf4 371 SUPERFAMILY SSF48208 3 358 2.43E-99 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 YPK_0093 07c5e4c90e8754c060deb584e425cbf4 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 216 227 1.7E-17 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 YPK_0093 07c5e4c90e8754c060deb584e425cbf4 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 180 197 1.7E-17 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 YPK_0093 07c5e4c90e8754c060deb584e425cbf4 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 338 352 1.7E-17 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 YPK_0093 07c5e4c90e8754c060deb584e425cbf4 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 53 66 1.7E-17 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 YPK_0093 07c5e4c90e8754c060deb584e425cbf4 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 115 133 1.7E-17 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 YPK_0093 07c5e4c90e8754c060deb584e425cbf4 371 Pfam PF01270 Glycosyl hydrolases family 8 11 353 4.5E-86 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 YPK_0093 07c5e4c90e8754c060deb584e425cbf4 371 Gene3D G3DSA:1.50.10.10 23 367 1.1E-129 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 YPK_0810 6000fcb15972ead45076295f113f798a 49 Gene3D G3DSA:1.10.443.10 1 48 1.2E-5 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_0810 6000fcb15972ead45076295f113f798a 49 SUPERFAMILY SSF56349 6 38 3.53E-6 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_3536 6b4759ec7d3bcac1c84c7b434f2abb57 363 Gene3D G3DSA:3.40.718.10 1 363 5.7E-155 T 12-10-2018 YPK_3536 6b4759ec7d3bcac1c84c7b434f2abb57 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 354 8.8E-166 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 YPK_3536 6b4759ec7d3bcac1c84c7b434f2abb57 363 SMART SM01329 6 355 1.2E-198 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YPK_3536 6b4759ec7d3bcac1c84c7b434f2abb57 363 SUPERFAMILY SSF53659 2 359 2.88E-122 T 12-10-2018 YPK_3536 6b4759ec7d3bcac1c84c7b434f2abb57 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 51.298 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 YPK_3536 6b4759ec7d3bcac1c84c7b434f2abb57 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 YPK_3536 6b4759ec7d3bcac1c84c7b434f2abb57 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 5.6E-135 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 529 2.9E-263 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 460 3.7E-120 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 Gene3D G3DSA:3.40.140.20 218 374 1.4E-58 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 529 45.809 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 PIRSF PIRSF000414 1 529 1.5E-227 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 SMART SM00851 19 132 7.0E-62 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 SUPERFAMILY SSF52335 7 196 1.57E-71 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 Gene3D G3DSA:3.40.140.20 392 529 4.3E-58 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 Pfam PF02142 MGS-like domain 19 132 2.9E-29 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 Gene3D G3DSA:3.40.50.1380 1 200 4.3E-86 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 SMART SM00798 137 461 2.2E-218 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 YPK_0357 55e38a80bf8477d5cbea577f8fe3f1b8 529 SUPERFAMILY SSF53927 221 529 7.62E-130 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YPK_0259 be3d38673b37e688a9848e892785cb30 255 SMART SM00382 26 215 1.3E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0259 be3d38673b37e688a9848e892785cb30 255 Pfam PF00005 ABC transporter 17 156 9.1E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0259 be3d38673b37e688a9848e892785cb30 255 Gene3D G3DSA:3.40.50.300 1 241 2.4E-60 T 12-10-2018 YPK_0259 be3d38673b37e688a9848e892785cb30 255 SUPERFAMILY SSF52540 1 213 1.0E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0259 be3d38673b37e688a9848e892785cb30 255 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1713 ea0b3f05e819071afdd87093da0b5ef2 373 Gene3D G3DSA:1.10.10.2510 205 373 3.9E-62 T 12-10-2018 YPK_1713 ea0b3f05e819071afdd87093da0b5ef2 373 SMART SM00558 87 215 2.2E-9 T 12-10-2018 IPR003347 JmjC domain YPK_1713 ea0b3f05e819071afdd87093da0b5ef2 373 Pfam PF08007 Cupin superfamily protein 10 310 1.3E-100 T 12-10-2018 IPR003347 JmjC domain YPK_1713 ea0b3f05e819071afdd87093da0b5ef2 373 SUPERFAMILY SSF51197 7 289 1.79E-74 T 12-10-2018 YPK_1713 ea0b3f05e819071afdd87093da0b5ef2 373 Gene3D G3DSA:2.60.120.650 2 204 3.6E-86 T 12-10-2018 YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 Pfam PF00664 ABC transporter transmembrane region 27 297 3.4E-60 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 Gene3D G3DSA:3.40.50.300 329 581 1.1E-95 T 12-10-2018 YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 Pfam PF00005 ABC transporter 359 509 7.2E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 SUPERFAMILY SSF52540 332 580 3.79E-95 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 SMART SM00382 368 555 2.0E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 2.9E-264 T 12-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 SUPERFAMILY SSF90123 14 327 1.24E-76 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 Gene3D G3DSA:1.20.1560.10 2 328 8.0E-83 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2665 0f0910e0df9785cc95dc053b9e0b534f 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 Gene3D G3DSA:2.40.240.10 463 547 2.9E-34 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 SUPERFAMILY SSF52374 28 346 2.58E-101 T 12-10-2018 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 SUPERFAMILY SSF50715 340 547 9.42E-80 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 Gene3D G3DSA:1.10.1160.10 261 339 8.1E-36 T 12-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 550 1.1E-304 T 12-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 549 53.687 T 12-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 Gene3D G3DSA:2.40.240.10 348 462 2.2E-47 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 Gene3D G3DSA:3.40.50.620 30 247 4.0E-106 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 3.9E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 3.9E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 3.9E-8 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 3.2E-126 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 Gene3D G3DSA:3.90.800.10 101 209 4.0E-106 T 12-10-2018 YPK_2994 38340b8f5e1e0b953f58cfe5608bba72 555 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 528 1.6E-62 T 12-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 Pfam PF00005 ABC transporter 24 174 1.6E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 Pfam PF00005 ABC transporter 279 434 1.9E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 SUPERFAMILY SSF52540 8 231 1.57E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 Gene3D G3DSA:3.40.50.300 254 503 5.2E-44 T 12-10-2018 YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 Gene3D G3DSA:3.40.50.300 1 234 3.3E-57 T 12-10-2018 YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 SMART SM00382 33 222 7.1E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 SMART SM00382 287 483 7.7E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3385 3b61ab5cb2858dc502493189ad2457cb 507 SUPERFAMILY SSF52540 251 489 4.76E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1910 fc2768c4eab8694dfcb723b8d3e6dadd 334 Pfam PF07859 alpha/beta hydrolase fold 89 308 1.7E-21 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 YPK_1910 fc2768c4eab8694dfcb723b8d3e6dadd 334 Gene3D G3DSA:3.40.50.1820 47 319 1.3E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1910 fc2768c4eab8694dfcb723b8d3e6dadd 334 SUPERFAMILY SSF53474 69 320 5.78E-49 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0779 bff6d33f0fa4bdbab1bdf3784e454ab8 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 5.3E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0779 bff6d33f0fa4bdbab1bdf3784e454ab8 339 SUPERFAMILY SSF53822 66 335 8.8E-63 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0779 bff6d33f0fa4bdbab1bdf3784e454ab8 339 Gene3D G3DSA:1.10.260.40 1 52 1.6E-17 T 12-10-2018 YPK_0779 bff6d33f0fa4bdbab1bdf3784e454ab8 339 SMART SM00354 6 75 1.2E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0779 bff6d33f0fa4bdbab1bdf3784e454ab8 339 Gene3D G3DSA:3.40.50.2300 66 310 2.1E-56 T 12-10-2018 YPK_0779 bff6d33f0fa4bdbab1bdf3784e454ab8 339 Gene3D G3DSA:3.40.50.2300 165 294 2.1E-56 T 12-10-2018 YPK_0779 bff6d33f0fa4bdbab1bdf3784e454ab8 339 SUPERFAMILY SSF47413 7 62 2.69E-12 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0779 bff6d33f0fa4bdbab1bdf3784e454ab8 339 Pfam PF13377 Periplasmic binding protein-like domain 174 334 1.4E-32 T 12-10-2018 YPK_1109 1047eaca77205968cffd1900de9452a5 254 SMART SM00479 7 184 7.4E-52 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_1109 1047eaca77205968cffd1900de9452a5 254 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 242 2.1E-94 T 12-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_1109 1047eaca77205968cffd1900de9452a5 254 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 225 2.0E-89 T 12-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_1109 1047eaca77205968cffd1900de9452a5 254 Pfam PF00929 Exonuclease 9 175 2.7E-40 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_1109 1047eaca77205968cffd1900de9452a5 254 Gene3D G3DSA:3.30.420.10 3 190 1.1E-60 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_1109 1047eaca77205968cffd1900de9452a5 254 SUPERFAMILY SSF53098 3 185 1.34E-55 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_1109 1047eaca77205968cffd1900de9452a5 254 Gene3D G3DSA:3.20.20.140 208 254 8.5E-8 T 12-10-2018 YPK_1438 787d9699f6e2f6629474e373a0bbe5ca 394 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 81 2.3E-16 T 12-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 YPK_1438 787d9699f6e2f6629474e373a0bbe5ca 394 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 2.5E-59 T 12-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 YPK_1438 787d9699f6e2f6629474e373a0bbe5ca 394 Pfam PF07670 Nucleoside recognition 92 190 1.3E-7 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 3.5E-243 T 12-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 Pfam PF00890 FAD binding domain 7 397 3.0E-114 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 PIRSF PIRSF000171 1 579 2.0E-41 T 12-10-2018 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 SUPERFAMILY SSF51905 3 416 1.89E-70 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 12-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 2.1E-5 T 12-10-2018 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.1E-5 T 12-10-2018 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 Gene3D G3DSA:3.90.700.10 237 363 2.3E-163 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 1.5E-9 T 12-10-2018 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.5E-9 T 12-10-2018 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 SUPERFAMILY SSF46977 444 583 7.46E-45 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 Gene3D G3DSA:4.10.80.40 543 577 7.5E-19 T 12-10-2018 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 7.5E-38 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 SUPERFAMILY SSF56425 227 358 1.79E-43 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 Gene3D G3DSA:3.50.50.60 7 409 2.3E-163 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 12-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 YPK_3813 05efe9b64a4d520c4a5000b218d96d7d 607 Gene3D G3DSA:1.20.58.100 424 538 4.0E-35 T 12-10-2018 YPK_4135 3041a067c6432df7fbb21df9ac446e74 162 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 157 6.0E-71 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 YPK_4135 3041a067c6432df7fbb21df9ac446e74 162 Pfam PF00588 SpoU rRNA Methylase family 2 147 6.0E-33 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YPK_4135 3041a067c6432df7fbb21df9ac446e74 162 Gene3D G3DSA:3.40.1280.10 1 162 3.7E-77 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_4135 3041a067c6432df7fbb21df9ac446e74 162 SUPERFAMILY SSF75217 1 157 7.19E-43 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases YPK_4135 3041a067c6432df7fbb21df9ac446e74 162 PIRSF PIRSF029256 1 159 3.8E-71 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 YPK_4135 3041a067c6432df7fbb21df9ac446e74 162 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 156 34.168 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 Pfam PF12343 Cold shock protein DEAD box A 591 664 1.3E-22 T 12-10-2018 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 Pfam PF00271 Helicase conserved C-terminal domain 234 342 8.7E-29 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 SUPERFAMILY SSF52540 5 210 1.65E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 Pfam PF03880 DbpA RNA binding domain 503 572 1.9E-19 T 12-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 Gene3D G3DSA:3.30.70.330 500 573 3.2E-9 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 Gene3D G3DSA:3.40.50.300 216 435 4.1E-50 T 12-10-2018 YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 SMART SM00487 26 224 1.8E-64 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 SMART SM00490 261 342 1.5E-31 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 SUPERFAMILY SSF52540 148 356 2.34E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 Pfam PF00270 DEAD/DEAH box helicase 32 196 2.4E-51 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 2 574 46.576 T 12-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 YPK_3724 379f581767564a07ca3212b7dbcb0ea1 664 Gene3D G3DSA:3.40.50.300 2 213 2.6E-77 T 12-10-2018 YPK_0008 4709c3ababf8fb171d502f83a3e424c4 320 Gene3D G3DSA:3.40.50.1100 51 147 4.7E-108 T 12-10-2018 YPK_0008 4709c3ababf8fb171d502f83a3e424c4 320 SUPERFAMILY SSF53686 6 308 2.88E-91 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_0008 4709c3ababf8fb171d502f83a3e424c4 320 Gene3D G3DSA:3.40.50.1100 8 308 4.7E-108 T 12-10-2018 YPK_0008 4709c3ababf8fb171d502f83a3e424c4 320 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 305 5.8E-84 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_0008 4709c3ababf8fb171d502f83a3e424c4 320 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 43 56 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 Pfam PF00455 DeoR C terminal sensor domain 76 235 1.0E-48 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 SMART SM01134 74 237 3.1E-61 T 12-10-2018 YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 Pfam PF08220 DeoR-like helix-turn-helix domain 7 61 1.1E-11 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 25 39 2.8E-5 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 39 57 2.8E-5 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 SUPERFAMILY SSF46785 5 64 3.91E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 Gene3D G3DSA:1.10.10.10 1 59 8.0E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 SUPERFAMILY SSF100950 75 235 6.51E-26 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 41 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YPK_2824 11e652a10e60af802eeb5217a2bc65f5 270 SMART SM00420 7 59 7.8E-12 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0285 ca36d1e45dec6dd380e0b0a233ad91d0 100 Pfam PF00276 Ribosomal protein L23 9 95 2.3E-32 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 YPK_0285 ca36d1e45dec6dd380e0b0a233ad91d0 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 12-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0285 ca36d1e45dec6dd380e0b0a233ad91d0 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 23.063 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 YPK_0285 ca36d1e45dec6dd380e0b0a233ad91d0 100 Gene3D G3DSA:3.30.70.330 1 100 1.7E-39 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPK_0285 ca36d1e45dec6dd380e0b0a233ad91d0 100 SUPERFAMILY SSF54189 3 92 5.76E-31 T 12-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_2885 c77bcbb0b6c5180ee9137e290f44c95f 323 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 132 149 2.7E-14 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_2885 c77bcbb0b6c5180ee9137e290f44c95f 323 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 159 172 2.7E-14 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_2885 c77bcbb0b6c5180ee9137e290f44c95f 323 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 82 93 2.7E-14 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 YPK_2885 c77bcbb0b6c5180ee9137e290f44c95f 323 SUPERFAMILY SSF56601 14 293 3.24E-62 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_2885 c77bcbb0b6c5180ee9137e290f44c95f 323 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 49 277 6.3E-82 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 YPK_2885 c77bcbb0b6c5180ee9137e290f44c95f 323 Gene3D G3DSA:3.40.710.10 35 320 1.2E-65 T 12-10-2018 YPK_1134 12214bc713bc4000b4800f377de806c5 231 SUPERFAMILY SSF69287 3 79 5.49E-18 T 12-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily YPK_1134 12214bc713bc4000b4800f377de806c5 231 SMART SM00988 11 75 3.1E-16 T 12-10-2018 IPR004029 UreE urease accessory, N-terminal YPK_1134 12214bc713bc4000b4800f377de806c5 231 Pfam PF05194 UreE urease accessory protein, C-terminal domain 85 220 2.3E-6 T 12-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 YPK_1134 12214bc713bc4000b4800f377de806c5 231 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 159 14.838 T 12-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 YPK_1134 12214bc713bc4000b4800f377de806c5 231 Pfam PF02814 UreE urease accessory protein, N-terminal domain 15 73 5.9E-17 T 12-10-2018 IPR004029 UreE urease accessory, N-terminal YPK_1134 12214bc713bc4000b4800f377de806c5 231 Gene3D G3DSA:2.60.260.20 1 79 9.8E-13 T 12-10-2018 YPK_3567 59c5d1d278d4da5a6f6e6a04169a79ea 247 Pfam PF10074 Uncharacterized conserved protein (DUF2285) 184 247 7.4E-11 T 12-10-2018 IPR018754 Protein of unknown function DUF2285 YPK_3412 4ac7a0aaad27e8b29d18839eb75fe23e 254 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 55 68 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site YPK_3412 4ac7a0aaad27e8b29d18839eb75fe23e 254 Gene3D G3DSA:3.40.190.10 25 241 1.4E-66 T 12-10-2018 YPK_3412 4ac7a0aaad27e8b29d18839eb75fe23e 254 Gene3D G3DSA:3.40.190.10 119 210 1.4E-66 T 12-10-2018 YPK_3412 4ac7a0aaad27e8b29d18839eb75fe23e 254 SUPERFAMILY SSF53850 1 243 1.71E-44 T 12-10-2018 YPK_3412 4ac7a0aaad27e8b29d18839eb75fe23e 254 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 239 5.2E-40 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_3412 4ac7a0aaad27e8b29d18839eb75fe23e 254 SMART SM00062 32 254 6.5E-30 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_0841 6b0ee1f37217aaedf18f6a7e612ac122 235 Pfam PF04231 Endonuclease I 44 229 1.9E-42 T 12-10-2018 IPR007346 Endonuclease I GO:0004518 YPK_0841 6b0ee1f37217aaedf18f6a7e612ac122 235 SUPERFAMILY SSF54060 25 230 1.29E-86 T 12-10-2018 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 Gene3D G3DSA:3.30.70.1450 367 458 1.4E-28 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 SUPERFAMILY SSF51735 1 152 2.15E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 5.8E-34 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 5.8E-34 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 5.8E-34 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 5.8E-34 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 5.8E-34 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 SUPERFAMILY SSF116726 390 440 1.44E-7 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 Pfam PF02080 TrkA-C domain 390 451 3.2E-10 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 Pfam PF02080 TrkA-C domain 156 225 6.1E-12 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 SUPERFAMILY SSF51735 232 376 5.43E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 Gene3D G3DSA:3.40.50.720 233 366 4.1E-36 T 12-10-2018 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 SUPERFAMILY SSF116726 148 226 2.75E-10 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 Gene3D G3DSA:3.30.70.1450 140 232 1.5E-22 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 Gene3D G3DSA:3.40.50.720 2 139 1.8E-49 T 12-10-2018 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 Pfam PF02254 TrkA-N domain 235 350 9.0E-25 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YPK_0313 0d6c2155cbbd3fb750b4d57747c0739b 458 Pfam PF02254 TrkA-N domain 3 124 1.2E-29 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 Hamap MF_01128 H(+)/Cl(-) exchange transporter ClcA [clcA]. 3 469 47.926 T 12-10-2018 IPR023861 Chloride channel, ClcA GO:0005887|GO:0006821|GO:0015108 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 Gene3D G3DSA:1.10.3080.10 31 473 2.0E-152 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 SUPERFAMILY SSF81340 23 453 8.5E-110 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 Pfam PF00654 Voltage gated chloride channel 90 437 3.5E-89 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 102 119 5.5E-28 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 352 372 5.5E-28 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 387 403 5.5E-28 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 405 424 5.5E-28 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_3458 6b5bc3db33bd18f99c67779fdfdfc653 478 PRINTS PR00762 Chloride channel signature 183 202 5.5E-28 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 YPK_1918 7b543ff253e8843e6276a36e063fc117 330 SUPERFAMILY SSF52283 2 135 1.29E-44 T 12-10-2018 YPK_1918 7b543ff253e8843e6276a36e063fc117 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 5.8E-54 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YPK_1918 7b543ff253e8843e6276a36e063fc117 330 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_1918 7b543ff253e8843e6276a36e063fc117 330 Gene3D G3DSA:3.40.50.720 102 297 1.9E-138 T 12-10-2018 YPK_1918 7b543ff253e8843e6276a36e063fc117 330 SUPERFAMILY SSF51735 102 298 1.29E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1918 7b543ff253e8843e6276a36e063fc117 330 Gene3D G3DSA:3.40.50.720 2 317 1.9E-138 T 12-10-2018 YPK_1918 7b543ff253e8843e6276a36e063fc117 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_1918 7b543ff253e8843e6276a36e063fc117 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 328 2.5E-32 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YPK_1918 7b543ff253e8843e6276a36e063fc117 330 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPK_0158 65d29456be7fba06f68c7e7737a98bb7 278 Pfam PF01694 Rhomboid family 132 271 3.0E-30 T 12-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 YPK_0158 65d29456be7fba06f68c7e7737a98bb7 278 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 84 2.3E-28 T 12-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 YPK_0158 65d29456be7fba06f68c7e7737a98bb7 278 Hamap MF_01594 Rhomboid protease GlpG [glpG]. 1 275 48.352 T 12-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 YPK_0158 65d29456be7fba06f68c7e7737a98bb7 278 SUPERFAMILY SSF144091 94 271 2.09E-43 T 12-10-2018 YPK_0158 65d29456be7fba06f68c7e7737a98bb7 278 Gene3D G3DSA:3.30.70.2350 1 68 1.6E-21 T 12-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily YPK_0158 65d29456be7fba06f68c7e7737a98bb7 278 Gene3D G3DSA:1.20.1540.10 92 271 9.5E-60 T 12-10-2018 IPR035952 Rhomboid-like superfamily YPK_0158 65d29456be7fba06f68c7e7737a98bb7 278 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 271 4.7E-121 T 12-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 YPK_2707 3dd796abd83915c96a96afde6db6ec4f 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 232 2.3E-29 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_2707 3dd796abd83915c96a96afde6db6ec4f 335 Gene3D G3DSA:3.40.50.720 1 334 5.9E-58 T 12-10-2018 YPK_2707 3dd796abd83915c96a96afde6db6ec4f 335 SUPERFAMILY SSF51735 1 332 2.77E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0589 d4b45e4ec22927f44c6f11552a4e57ab 414 SUPERFAMILY SSF53850 22 411 2.12E-46 T 12-10-2018 YPK_0589 d4b45e4ec22927f44c6f11552a4e57ab 414 Pfam PF01547 Bacterial extracellular solute-binding protein 34 324 1.4E-25 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_0589 d4b45e4ec22927f44c6f11552a4e57ab 414 Gene3D G3DSA:3.40.190.10 22 414 8.5E-50 T 12-10-2018 YPK_0882 a2db907f67a2c0ad857deb1c5fcd42d3 313 Gene3D G3DSA:1.10.443.10 134 302 1.2E-39 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_0882 a2db907f67a2c0ad857deb1c5fcd42d3 313 SUPERFAMILY SSF56349 26 290 5.89E-43 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_0882 a2db907f67a2c0ad857deb1c5fcd42d3 313 Pfam PF00589 Phage integrase family 139 284 1.2E-16 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_3701 b028f65230f61414ee64d15c3c67f5a2 193 SMART SM00072 1 181 6.3E-13 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPK_3701 b028f65230f61414ee64d15c3c67f5a2 193 Gene3D G3DSA:3.40.50.300 7 177 1.5E-19 T 12-10-2018 YPK_3701 b028f65230f61414ee64d15c3c67f5a2 193 SUPERFAMILY SSF52540 1 177 6.83E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3701 b028f65230f61414ee64d15c3c67f5a2 193 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 1 178 36.234 T 12-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_3701 b028f65230f61414ee64d15c3c67f5a2 193 Pfam PF13238 AAA domain 5 138 2.5E-8 T 12-10-2018 YPK_3701 b028f65230f61414ee64d15c3c67f5a2 193 Gene3D G3DSA:3.30.63.10 34 89 1.5E-19 T 12-10-2018 YPK_3701 b028f65230f61414ee64d15c3c67f5a2 193 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 3 178 3.6E-66 T 12-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_0264 89c7725a803655a51787a918673ccb3b 640 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0264 89c7725a803655a51787a918673ccb3b 640 Pfam PF00005 ABC transporter 17 178 4.7E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0264 89c7725a803655a51787a918673ccb3b 640 Pfam PF00005 ABC transporter 328 459 2.8E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0264 89c7725a803655a51787a918673ccb3b 640 SUPERFAMILY SSF52540 294 517 4.85E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0264 89c7725a803655a51787a918673ccb3b 640 Pfam PF12848 ABC transporter 217 297 1.2E-28 T 12-10-2018 IPR032781 ABC-transporter extension domain YPK_0264 89c7725a803655a51787a918673ccb3b 640 Gene3D G3DSA:3.40.50.300 6 274 1.6E-60 T 12-10-2018 YPK_0264 89c7725a803655a51787a918673ccb3b 640 SUPERFAMILY SSF52540 2 255 3.31E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0264 89c7725a803655a51787a918673ccb3b 640 Gene3D G3DSA:3.40.50.300 276 539 7.0E-59 T 12-10-2018 YPK_0264 89c7725a803655a51787a918673ccb3b 640 SMART SM00382 337 506 7.8E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0264 89c7725a803655a51787a918673ccb3b 640 SMART SM00382 26 223 6.4E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0264 89c7725a803655a51787a918673ccb3b 640 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0543 c062588f4d51a1a073f0c92cbfe7a381 328 PIRSF PIRSF015753 4 324 4.4E-132 T 12-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 YPK_0543 c062588f4d51a1a073f0c92cbfe7a381 328 Gene3D G3DSA:3.40.30.130 21 316 2.2E-136 T 12-10-2018 YPK_0543 c062588f4d51a1a073f0c92cbfe7a381 328 SUPERFAMILY SSF52833 42 163 1.64E-14 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_0543 c062588f4d51a1a073f0c92cbfe7a381 328 Pfam PF13410 Glutathione S-transferase, C-terminal domain 203 272 1.0E-12 T 12-10-2018 YPK_0543 c062588f4d51a1a073f0c92cbfe7a381 328 SUPERFAMILY SSF47616 176 325 2.09E-36 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPK_0543 c062588f4d51a1a073f0c92cbfe7a381 328 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 158 2.6E-24 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YPK_0543 c062588f4d51a1a073f0c92cbfe7a381 328 Gene3D G3DSA:1.20.1050.10 174 284 2.2E-136 T 12-10-2018 YPK_0366 fe0c32b114bbd477eac921ca4880c07d 612 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 38 607 44.116 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 YPK_0366 fe0c32b114bbd477eac921ca4880c07d 612 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 46 603 2.5E-254 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 YPK_0366 fe0c32b114bbd477eac921ca4880c07d 612 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 44 609 0.0 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 YPK_0366 fe0c32b114bbd477eac921ca4880c07d 612 PIRSF PIRSF000719 37 612 0.0 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 YPK_2171 d3ed7dc72eed65d510dfa9cd04f3e2e4 360 Pfam PF13416 Bacterial extracellular solute-binding protein 54 331 4.0E-29 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_2171 d3ed7dc72eed65d510dfa9cd04f3e2e4 360 SUPERFAMILY SSF53850 34 338 8.89E-42 T 12-10-2018 YPK_2171 d3ed7dc72eed65d510dfa9cd04f3e2e4 360 Gene3D G3DSA:3.40.190.10 141 281 3.8E-30 T 12-10-2018 YPK_2171 d3ed7dc72eed65d510dfa9cd04f3e2e4 360 Gene3D G3DSA:3.40.190.10 52 330 3.8E-30 T 12-10-2018 YPK_0815 3425e836a02d2ed10968123e708f8568 714 SUPERFAMILY SSF56935 59 714 1.01E-125 T 12-10-2018 YPK_0815 3425e836a02d2ed10968123e708f8568 714 Gene3D G3DSA:2.170.130.10 49 179 3.1E-31 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_0815 3425e836a02d2ed10968123e708f8568 714 Gene3D G3DSA:2.40.170.20 180 714 1.2E-115 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_0815 3425e836a02d2ed10968123e708f8568 714 Pfam PF00593 TonB dependent receptor 258 711 2.3E-61 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_0815 3425e836a02d2ed10968123e708f8568 714 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 73 714 2.0E-106 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 YPK_0815 3425e836a02d2ed10968123e708f8568 714 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 168 7.3E-15 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 Pfam PF00813 FliP family 59 249 2.3E-74 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 182 197 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 76 96 4.5E-66 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 227 252 4.5E-66 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 57 76 4.5E-66 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 182 202 4.5E-66 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 96 115 4.5E-66 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 203 224 4.5E-66 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 115 127 1.5E-11 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 243 253 1.5E-11 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 55 64 1.5E-11 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 175 187 1.5E-11 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 127 141 1.5E-11 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_0706 cc6fbcee784704959b8cb520bcb84c80 256 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 59 252 7.4E-73 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 YPK_3628 75e979f65ff827c0aa54a5c92a7b709a 423 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 6 79 7.6E-23 T 12-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 YPK_3628 75e979f65ff827c0aa54a5c92a7b709a 423 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 2 420 8.0E-154 T 12-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 YPK_3628 75e979f65ff827c0aa54a5c92a7b709a 423 Pfam PF07670 Nucleoside recognition 97 193 4.5E-9 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 YPK_3628 75e979f65ff827c0aa54a5c92a7b709a 423 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 199 420 1.4E-75 T 12-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 YPK_2162 3064cf68c32a45a94dde160a991419fd 401 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 401 40.633 T 12-10-2018 IPR022855 Multidrug resistance protein MdtH YPK_2162 3064cf68c32a45a94dde160a991419fd 401 Pfam PF07690 Major Facilitator Superfamily 20 234 3.3E-23 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2162 3064cf68c32a45a94dde160a991419fd 401 Gene3D G3DSA:1.20.1250.20 13 386 1.2E-47 T 12-10-2018 YPK_2162 3064cf68c32a45a94dde160a991419fd 401 SUPERFAMILY SSF103473 14 392 7.19E-53 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0134 1381c233e5ffa9b669e3acdaa59c7c0f 312 SUPERFAMILY SSF47413 1 44 1.5E-6 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0134 1381c233e5ffa9b669e3acdaa59c7c0f 312 Gene3D G3DSA:3.40.50.2300 48 289 4.2E-63 T 12-10-2018 YPK_0134 1381c233e5ffa9b669e3acdaa59c7c0f 312 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 45 287 4.8E-33 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_0134 1381c233e5ffa9b669e3acdaa59c7c0f 312 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 33 1.1E-8 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0134 1381c233e5ffa9b669e3acdaa59c7c0f 312 Gene3D G3DSA:1.10.260.40 1 42 2.0E-8 T 12-10-2018 YPK_0134 1381c233e5ffa9b669e3acdaa59c7c0f 312 SMART SM00354 1 56 1.9E-10 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0134 1381c233e5ffa9b669e3acdaa59c7c0f 312 Gene3D G3DSA:3.40.50.2300 142 273 4.2E-63 T 12-10-2018 YPK_0134 1381c233e5ffa9b669e3acdaa59c7c0f 312 SUPERFAMILY SSF53822 44 297 3.14E-56 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 SUPERFAMILY SSF111369 179 325 2.48E-13 T 12-10-2018 YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:1.10.287.470 179 206 1.3E-25 T 12-10-2018 YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 SUPERFAMILY SSF111369 41 102 7.19E-8 T 12-10-2018 YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 Hamap MF_01304 UPF0194 membrane protein YbhG [ybhG]. 2 328 52.752 T 12-10-2018 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:2.40.50.100 43 77 8.4E-13 T 12-10-2018 YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:2.40.50.100 207 241 1.3E-25 T 12-10-2018 YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 40 292 3.7E-17 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:1.10.287.470 78 105 8.4E-13 T 12-10-2018 YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:2.40.30.170 242 321 1.3E-25 T 12-10-2018 YPK_2900 b9b1fbd0d84556405d8c8d9169322a63 328 Gene3D G3DSA:1.10.287.470 108 173 3.3E-9 T 12-10-2018 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 408 7.0E-155 T 12-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 Gene3D G3DSA:3.30.70.360 208 319 2.6E-174 T 12-10-2018 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 176 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 Pfam PF01546 Peptidase family M20/M25/M40 139 400 2.3E-14 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 Hamap MF_00550 Peptidase T [pepT]. 1 404 54.88 T 12-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 Gene3D G3DSA:3.40.630.10 4 400 2.6E-174 T 12-10-2018 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 Pfam PF07687 Peptidase dimerisation domain 206 303 2.8E-11 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain YPK_1712 66b2efca38023eb354db55490a9aa44f 411 PIRSF PIRSF037215 1 408 1.5E-183 T 12-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 SUPERFAMILY SSF53187 1 400 2.51E-78 T 12-10-2018 YPK_1712 66b2efca38023eb354db55490a9aa44f 411 SUPERFAMILY SSF55031 208 320 6.28E-41 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YPK_1021 d614e15908fa2217d79159addb49c582 302 Gene3D G3DSA:3.40.190.10 163 262 1.2E-60 T 12-10-2018 YPK_1021 d614e15908fa2217d79159addb49c582 302 Gene3D G3DSA:1.10.10.10 3 91 1.7E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1021 d614e15908fa2217d79159addb49c582 302 SUPERFAMILY SSF53850 89 295 4.52E-43 T 12-10-2018 YPK_1021 d614e15908fa2217d79159addb49c582 302 Pfam PF03466 LysR substrate binding domain 88 291 3.5E-40 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_1021 d614e15908fa2217d79159addb49c582 302 SUPERFAMILY SSF46785 5 107 4.24E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1021 d614e15908fa2217d79159addb49c582 302 Gene3D G3DSA:3.40.190.10 92 289 1.2E-60 T 12-10-2018 YPK_1021 d614e15908fa2217d79159addb49c582 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 3.2E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 SUPERFAMILY SSF53706 219 693 1.99E-79 T 12-10-2018 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 2.7E-11 T 12-10-2018 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 SMART SM00929 88 128 1.9E-19 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 6.5E-10 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Gene3D G3DSA:2.20.25.90 221 274 1.1E-12 T 12-10-2018 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 SUPERFAMILY SSF54862 81 213 5.44E-34 T 12-10-2018 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 SMART SM00926 221 275 1.9E-9 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Gene3D G3DSA:3.40.50.740 510 679 1.7E-10 T 12-10-2018 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 124 1.1E-14 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Gene3D G3DSA:3.10.20.740 1 127 3.4E-28 T 12-10-2018 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 SUPERFAMILY SSF50692 821 896 7.46E-14 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 661 1.7E-202 T 12-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Pfam PF00384 Molybdopterin oxidoreductase 554 637 1.3E-6 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Pfam PF01568 Molydopterin dinucleotide binding domain 830 896 1.1E-7 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 SUPERFAMILY SSF54292 1 77 9.86E-19 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 Gene3D G3DSA:2.40.40.20 812 908 9.7E-10 T 12-10-2018 YPK_1565 f0f0fad3728120b4a6f22aa2bad7fc47 914 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_2296 7205ccb1e5322c6118577eb4325c59a0 119 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 43 108 2.1E-23 T 12-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 YPK_2296 7205ccb1e5322c6118577eb4325c59a0 119 Gene3D G3DSA:2.40.50.230 39 117 9.4E-26 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_2296 7205ccb1e5322c6118577eb4325c59a0 119 Pfam PF04717 Type VI secretion system, phage-baseplate injector 43 108 1.9E-24 T 12-10-2018 IPR006531 Gp5 N-terminal YPK_3758 90575a40710e47f704875be878136b3a 323 SUPERFAMILY SSF48576 6 322 2.59E-97 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily YPK_3758 90575a40710e47f704875be878136b3a 323 Gene3D G3DSA:1.10.600.10 1 322 8.3E-121 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily YPK_3758 90575a40710e47f704875be878136b3a 323 Pfam PF00348 Polyprenyl synthetase 32 263 2.3E-76 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 YPK_3758 90575a40710e47f704875be878136b3a 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site YPK_3758 90575a40710e47f704875be878136b3a 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site YPK_1953 61ae461493380ec87fde85b71f6664bc 383 Pfam PF07520 Virulence factor SrfB 1 354 3.0E-153 T 12-10-2018 IPR009216 Virulence factor SrfB YPK_2863 ebf882104f052e3ed4a639041a62afdd 312 Pfam PF00005 ABC transporter 17 163 4.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2863 ebf882104f052e3ed4a639041a62afdd 312 SUPERFAMILY SSF52540 1 240 1.41E-77 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2863 ebf882104f052e3ed4a639041a62afdd 312 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2863 ebf882104f052e3ed4a639041a62afdd 312 Gene3D G3DSA:3.40.50.300 1 244 4.4E-77 T 12-10-2018 YPK_2863 ebf882104f052e3ed4a639041a62afdd 312 SUPERFAMILY SSF54631 269 306 1.7E-5 T 12-10-2018 YPK_2863 ebf882104f052e3ed4a639041a62afdd 312 SMART SM00382 26 213 2.9E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1668 8f59455028857041b2f900a023a85c2c 355 SUPERFAMILY SSF52821 128 268 6.96E-31 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_1668 8f59455028857041b2f900a023a85c2c 355 Pfam PF00581 Rhodanese-like domain 138 233 2.3E-15 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_1668 8f59455028857041b2f900a023a85c2c 355 Gene3D G3DSA:3.30.70.100 13 118 1.5E-14 T 12-10-2018 YPK_1668 8f59455028857041b2f900a023a85c2c 355 Gene3D G3DSA:3.40.250.10 126 271 1.3E-43 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_1668 8f59455028857041b2f900a023a85c2c 355 SMART SM00450 136 237 9.3E-27 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_1668 8f59455028857041b2f900a023a85c2c 355 Pfam PF12368 Rhodanase C-terminal 246 308 6.1E-19 T 12-10-2018 IPR022111 Rhodanase, C-terminal YPK_1668 8f59455028857041b2f900a023a85c2c 355 Hamap MF_00469 UPF0176 protein YceA [yceA]. 22 277 38.612 T 12-10-2018 IPR020936 Uncharacterised protein family UPF0176 YPK_1558 79569ebd50ebae331cfc04d900568a59 404 Pfam PF00155 Aminotransferase class I and II 58 392 3.6E-45 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_1558 79569ebd50ebae331cfc04d900568a59 404 Gene3D G3DSA:3.40.640.10 53 294 1.1E-147 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1558 79569ebd50ebae331cfc04d900568a59 404 SUPERFAMILY SSF53383 7 401 6.92E-95 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1558 79569ebd50ebae331cfc04d900568a59 404 Gene3D G3DSA:3.90.1150.10 21 398 1.1E-147 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 SUPERFAMILY SSF51735 3 224 7.69E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 Gene3D G3DSA:3.40.50.720 2 235 6.8E-68 T 12-10-2018 YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.1E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.1E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.1E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 Pfam PF00106 short chain dehydrogenase 2 187 4.5E-54 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 3.0E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 3.0E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 3.0E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 3.0E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1976 1e4d9c4c01e65e82fd17207fc0192d3b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 3.0E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 SUPERFAMILY SSF55874 6 216 7.46E-69 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 SMART SM00387 28 174 1.2E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 Pfam PF00204 DNA gyrase B 219 385 1.5E-39 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 SUPERFAMILY SSF54211 218 383 3.03E-46 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 Gene3D G3DSA:3.40.50.670 391 624 4.4E-94 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 Pfam PF01751 Toprim domain 414 523 3.3E-12 T 12-10-2018 IPR006171 TOPRIM domain YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 629 47.062 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 621 6.3E-24 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 SMART SM00433 35 625 6.0E-209 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 110 124 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 480 496 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 67 80 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 267 280 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 32 47 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 518 530 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 498 515 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 561 577 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR00418 DNA topoisomerase II family signature 415 429 8.8E-59 T 12-10-2018 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 193 214 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 363 388 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 136 150 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 295 311 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 504 520 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 538 560 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 150 165 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 312 327 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 239 262 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 470 482 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 449 470 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 175 192 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 PRINTS PR01098 Topoisomerase IV subunit B signature 339 362 4.4E-154 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 626 0.0 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 Gene3D G3DSA:3.30.565.10 4 216 5.7E-76 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 SUPERFAMILY SSF56719 389 622 2.28E-77 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 Gene3D G3DSA:3.30.230.10 217 390 8.9E-59 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0659 1761fbaf7278fb225fc610e65dbc2dee 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 171 2.6E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1277 fb7a0275ed6f6692408bf6c1c1a2b07c 128 Gene3D G3DSA:3.90.1010.10 1 128 6.6E-58 T 12-10-2018 YPK_1277 fb7a0275ed6f6692408bf6c1c1a2b07c 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.0E-68 T 12-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 YPK_1277 fb7a0275ed6f6692408bf6c1c1a2b07c 128 SUPERFAMILY SSF82649 1 125 4.45E-47 T 12-10-2018 YPK_1277 fb7a0275ed6f6692408bf6c1c1a2b07c 128 Pfam PF01592 NifU-like N terminal domain 2 126 1.5E-56 T 12-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 YPK_0216 f98d0a929270e34dc750cd986a59eb12 684 Pfam PF00665 Integrase core domain 317 423 1.4E-13 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YPK_0216 f98d0a929270e34dc750cd986a59eb12 684 Gene3D G3DSA:1.10.10.10 1 70 2.5E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0216 f98d0a929270e34dc750cd986a59eb12 684 SUPERFAMILY SSF46955 2 64 1.1E-8 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_0216 f98d0a929270e34dc750cd986a59eb12 684 Pfam PF09299 Mu transposase, C-terminal 531 591 3.6E-16 T 12-10-2018 IPR015378 Transposase-like, Mu, C-terminal YPK_0216 f98d0a929270e34dc750cd986a59eb12 684 SUPERFAMILY SSF53098 298 517 3.8E-53 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_0216 f98d0a929270e34dc750cd986a59eb12 684 SUPERFAMILY SSF50610 522 594 6.28E-22 T 12-10-2018 IPR009004 Transposase, Mu, C-terminal YPK_0216 f98d0a929270e34dc750cd986a59eb12 684 Gene3D G3DSA:3.30.420.10 288 531 9.2E-49 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_1127 578681d76e08ed7b6d926caf2ddf2a55 268 Gene3D G3DSA:1.10.3720.10 60 262 1.4E-19 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1127 578681d76e08ed7b6d926caf2ddf2a55 268 SUPERFAMILY SSF161098 65 256 4.97E-24 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1127 578681d76e08ed7b6d926caf2ddf2a55 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 261 1.6E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 Pfam PF12221 Bacterial membrane protein N terminal 1 60 4.8E-14 T 12-10-2018 IPR020980 Menbrane protein HflK, N-terminal YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 Gene3D G3DSA:3.30.479.30 123 256 2.8E-18 T 12-10-2018 YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 PRINTS PR00721 Stomatin signature 183 200 1.1E-7 T 12-10-2018 IPR001972 Stomatin family GO:0016020 YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 PRINTS PR00721 Stomatin signature 101 123 1.1E-7 T 12-10-2018 IPR001972 Stomatin family GO:0016020 YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 PRINTS PR00721 Stomatin signature 148 169 1.1E-7 T 12-10-2018 IPR001972 Stomatin family GO:0016020 YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 Pfam PF01145 SPFH domain / Band 7 family 98 269 4.6E-30 T 12-10-2018 IPR001107 Band 7 domain YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 TIGRFAM TIGR01933 hflK: HflK protein 96 355 9.8E-121 T 12-10-2018 IPR010201 HflK GO:0016021 YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 SMART SM00244 94 254 7.6E-43 T 12-10-2018 IPR001107 Band 7 domain YPK_3796 52b9f73b19e433e63cf9b7c672b1ac6d 420 SUPERFAMILY SSF117892 127 258 4.18E-20 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily YPK_3007 8e467dc207fb89d421b1a8dd10d5bcd1 157 SUPERFAMILY SSF55486 4 151 7.32E-48 T 12-10-2018 YPK_3007 8e467dc207fb89d421b1a8dd10d5bcd1 157 Gene3D G3DSA:3.40.390.30 1 155 1.9E-56 T 12-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 YPK_3007 8e467dc207fb89d421b1a8dd10d5bcd1 157 Pfam PF02130 Uncharacterized protein family UPF0054 21 143 2.1E-36 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 YPK_3007 8e467dc207fb89d421b1a8dd10d5bcd1 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 12-10-2018 IPR020549 Endoribonuclease YbeY, conserved site YPK_3007 8e467dc207fb89d421b1a8dd10d5bcd1 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 144 6.2E-35 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 YPK_3007 8e467dc207fb89d421b1a8dd10d5bcd1 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 148 23.472 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 Pfam PF11734 TilS substrate C-terminal domain 381 453 2.9E-26 T 12-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 SUPERFAMILY SSF56037 346 453 6.54E-31 T 12-10-2018 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 Pfam PF01171 PP-loop family 24 202 4.6E-58 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 24 207 4.2E-53 T 12-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 Pfam PF09179 TilS substrate binding domain 252 319 2.7E-20 T 12-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 Gene3D G3DSA:3.40.50.620 17 237 7.1E-70 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 Gene3D G3DSA:1.20.59.20 238 322 7.6E-29 T 12-10-2018 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 SUPERFAMILY SSF82829 238 321 3.92E-25 T 12-10-2018 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 381 425 4.0E-13 T 12-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 SMART SM00977 381 453 4.9E-26 T 12-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 SUPERFAMILY SSF52402 16 237 8.82E-61 T 12-10-2018 YPK_1084 f4fe2a9bfb903fe6b6b345e2f02a37e4 460 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 12 311 23.358 T 12-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PIRSF PIRSF003161 1 330 1.6E-117 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 SUPERFAMILY SSF48029 113 323 2.09E-63 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 SUPERFAMILY SSF48029 4 103 3.66E-21 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 113 136 1.2E-73 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 1.2E-73 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 1.2E-73 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 1.2E-73 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 3 19 1.2E-73 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 32 58 1.2E-73 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 1.2E-73 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Gene3D G3DSA:1.10.220.30 193 329 1.3E-41 T 12-10-2018 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Pfam PF14841 FliG middle domain 114 186 7.0E-25 T 12-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Pfam PF14842 FliG N-terminal domain 3 102 1.9E-31 T 12-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Gene3D G3DSA:1.10.220.30 88 190 1.9E-26 T 12-10-2018 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 2 330 1.5E-139 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Pfam PF01706 FliG C-terminal domain 216 322 4.5E-37 T 12-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal YPK_2392 e1f7c1ee5ad7ace1fece98f2cf34f2e5 330 Gene3D G3DSA:1.10.220.30 1 79 2.7E-20 T 12-10-2018 YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 Gene3D G3DSA:2.40.50.100 88 232 2.6E-69 T 12-10-2018 YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 SUPERFAMILY SSF111369 81 320 6.67E-57 T 12-10-2018 YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 Pfam PF13437 HlyD family secretion protein 200 305 1.2E-6 T 12-10-2018 YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 Pfam PF13533 Biotin-lipoyl like 89 137 2.0E-16 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 4 415 55.109 T 12-10-2018 IPR022824 Multidrug resistance protein MdtA YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 396 1.4E-77 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 Gene3D G3DSA:2.40.420.20 305 398 7.1E-21 T 12-10-2018 YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 Gene3D G3DSA:2.40.30.170 82 304 2.6E-69 T 12-10-2018 YPK_1332 3ba0de8c699537ee606d2039ded9bba9 444 Gene3D G3DSA:1.10.287.470 123 196 2.6E-69 T 12-10-2018 YPK_0769 4db1d89bce7833b575df08a2fa9e76c6 197 Pfam PF14136 Domain of unknown function (DUF4303) 14 184 1.1E-13 T 12-10-2018 IPR025409 Protein of unknown function DUF4303 YPK_2268 d95e52b8c41f5ff8b8d074854a7c94ab 440 Gene3D G3DSA:3.40.1080.20 301 440 3.1E-56 T 12-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily YPK_2268 d95e52b8c41f5ff8b8d074854a7c94ab 440 Gene3D G3DSA:3.40.1080.10 1 195 4.4E-57 T 12-10-2018 YPK_2268 d95e52b8c41f5ff8b8d074854a7c94ab 440 SUPERFAMILY SSF100950 4 232 1.53E-32 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_2268 d95e52b8c41f5ff8b8d074854a7c94ab 440 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 283 434 6.2E-60 T 12-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain YPK_2268 d95e52b8c41f5ff8b8d074854a7c94ab 440 Gene3D G3DSA:3.30.750.70 200 298 1.6E-34 T 12-10-2018 YPK_2268 d95e52b8c41f5ff8b8d074854a7c94ab 440 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 6 195 4.9E-14 T 12-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 YPK_2268 d95e52b8c41f5ff8b8d074854a7c94ab 440 SUPERFAMILY SSF100950 209 438 1.0E-59 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_2746 34cdcedf32dec717e2aa6b798cdc59b7 220 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 2.9E-34 T 12-10-2018 YPK_2746 34cdcedf32dec717e2aa6b798cdc59b7 220 SUPERFAMILY SSF56784 1 212 7.43E-28 T 12-10-2018 IPR036412 HAD-like superfamily YPK_2746 34cdcedf32dec717e2aa6b798cdc59b7 220 Gene3D G3DSA:3.40.50.1000 3 213 6.2E-64 T 12-10-2018 IPR023214 HAD superfamily YPK_2746 34cdcedf32dec717e2aa6b798cdc59b7 220 Gene3D G3DSA:1.20.1440.100 15 87 6.2E-64 T 12-10-2018 YPK_2746 34cdcedf32dec717e2aa6b798cdc59b7 220 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 198 2.4E-48 T 12-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like YPK_2746 34cdcedf32dec717e2aa6b798cdc59b7 220 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 188 4.4E-24 T 12-10-2018 YPK_2705 3b0d46c02df11d6d1f03754f780dd65c 351 Gene3D G3DSA:3.40.640.10 10 257 3.2E-98 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2705 3b0d46c02df11d6d1f03754f780dd65c 351 SUPERFAMILY SSF53383 15 347 2.48E-112 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2705 3b0d46c02df11d6d1f03754f780dd65c 351 Gene3D G3DSA:3.90.1150.10 258 348 1.7E-27 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2705 3b0d46c02df11d6d1f03754f780dd65c 351 Pfam PF01212 Beta-eliminating lyase 16 296 1.1E-95 T 12-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 YPK_2705 3b0d46c02df11d6d1f03754f780dd65c 351 PIRSF PIRSF017617 7 351 1.1E-130 T 12-10-2018 IPR023603 Threonine aldolase YPK_3215 7a2745278f942d3782dfc5ea79562658 187 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 90 169 6.1E-25 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YPK_3215 7a2745278f942d3782dfc5ea79562658 187 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 89 152 4.1E-15 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YPK_3215 7a2745278f942d3782dfc5ea79562658 187 Gene3D G3DSA:1.10.10.10 87 187 9.5E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3215 7a2745278f942d3782dfc5ea79562658 187 SUPERFAMILY SSF46767 88 170 5.1E-25 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 YPK_3795 c408f0cbfe17e226ce1091808c0f509c 334 SUPERFAMILY SSF117892 195 231 9.29E-8 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily YPK_3795 c408f0cbfe17e226ce1091808c0f509c 334 SMART SM00244 18 225 1.1E-42 T 12-10-2018 IPR001107 Band 7 domain YPK_3795 c408f0cbfe17e226ce1091808c0f509c 334 Pfam PF01145 SPFH domain / Band 7 family 22 241 1.9E-34 T 12-10-2018 IPR001107 Band 7 domain YPK_3795 c408f0cbfe17e226ce1091808c0f509c 334 PIRSF PIRSF005651 1 334 6.7E-106 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 YPK_3795 c408f0cbfe17e226ce1091808c0f509c 334 TIGRFAM TIGR01932 hflC: HflC protein 1 325 6.0E-138 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 YPK_3795 c408f0cbfe17e226ce1091808c0f509c 334 SUPERFAMILY SSF117892 56 156 1.44E-16 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 SUPERFAMILY SSF55957 357 445 7.19E-21 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 443 1.1E-194 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 364 4.9E-32 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 5.3E-14 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 5.3E-14 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 5.3E-14 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Gene3D G3DSA:3.40.120.10 3 154 8.1E-49 T 12-10-2018 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 SUPERFAMILY SSF53738 258 365 7.06E-31 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 SUPERFAMILY SSF53738 156 256 2.59E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Gene3D G3DSA:3.40.120.10 257 339 2.6E-64 T 12-10-2018 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 442 1.9E-14 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 445 47.355 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 9.1E-46 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Gene3D G3DSA:3.40.120.10 175 362 2.6E-64 T 12-10-2018 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Gene3D G3DSA:3.30.310.50 370 446 2.6E-24 T 12-10-2018 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 SUPERFAMILY SSF53738 2 181 1.02E-49 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3734 917ffccec3c58d39b1f52151e6074ab4 446 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 4.9E-20 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_1561 2df207d132bf2e6dc2b11adf3f1bac31 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 182 41.895 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1561 2df207d132bf2e6dc2b11adf3f1bac31 225 SUPERFAMILY SSF56770 43 190 5.1E-64 T 12-10-2018 YPK_1561 2df207d132bf2e6dc2b11adf3f1bac31 225 Gene3D G3DSA:3.40.50.12280 26 193 6.5E-70 T 12-10-2018 YPK_1561 2df207d132bf2e6dc2b11adf3f1bac31 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 149 165 - T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1561 2df207d132bf2e6dc2b11adf3f1bac31 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 69 175 5.2E-22 T 12-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1561 2df207d132bf2e6dc2b11adf3f1bac31 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 183 9.4E-69 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 Pfam PF00990 Diguanylate cyclase, GGDEF domain 247 399 1.4E-24 T 12-10-2018 IPR000160 GGDEF domain YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 SUPERFAMILY SSF55073 249 405 2.75E-26 T 12-10-2018 IPR029787 Nucleotide cyclase YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 244 403 4.8E-15 T 12-10-2018 IPR000160 GGDEF domain YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 SMART SM00052 413 658 3.8E-96 T 12-10-2018 IPR001633 EAL domain YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 Gene3D G3DSA:3.20.20.450 417 667 1.0E-83 T 12-10-2018 IPR035919 EAL domain superfamily YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 Gene3D G3DSA:3.30.70.270 239 416 1.4E-30 T 12-10-2018 YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 SUPERFAMILY SSF141868 418 665 1.31E-77 T 12-10-2018 IPR035919 EAL domain superfamily YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 36 155 2.9E-58 T 12-10-2018 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 SMART SM00267 229 403 1.9E-26 T 12-10-2018 IPR000160 GGDEF domain YPK_0094 24b1c5eecd66e00b89ef721819c8b843 671 Pfam PF00563 EAL domain 419 653 4.5E-63 T 12-10-2018 IPR001633 EAL domain YPK_2512 8ff24280ae1a2489797bfd5a2e9d5327 434 Gene3D G3DSA:1.20.1250.20 233 426 1.5E-17 T 12-10-2018 YPK_2512 8ff24280ae1a2489797bfd5a2e9d5327 434 Gene3D G3DSA:1.20.1250.20 12 218 2.9E-37 T 12-10-2018 YPK_2512 8ff24280ae1a2489797bfd5a2e9d5327 434 Pfam PF07690 Major Facilitator Superfamily 27 388 3.8E-36 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2512 8ff24280ae1a2489797bfd5a2e9d5327 434 SUPERFAMILY SSF103473 6 430 1.83E-68 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 SMART SM00382 157 300 3.1E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 Pfam PF00072 Response regulator receiver domain 10 118 1.2E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 Gene3D G3DSA:3.40.50.2300 5 132 2.0E-36 T 12-10-2018 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 161 174 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 Pfam PF00158 Sigma-54 interaction domain 137 303 5.1E-72 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 Gene3D G3DSA:1.10.8.60 308 386 3.6E-22 T 12-10-2018 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 SMART SM00448 7 118 2.8E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 Gene3D G3DSA:3.40.50.300 133 307 1.3E-63 T 12-10-2018 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 SUPERFAMILY SSF52540 136 381 1.66E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 SUPERFAMILY SSF46689 388 438 1.85E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 SUPERFAMILY SSF52172 6 181 5.27E-43 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1259 f09f451ac5ffb5870ac753c56edcee79 445 Gene3D G3DSA:1.10.10.60 389 441 1.5E-9 T 12-10-2018 YPK_0608 b4a91662572f82bc01c28afe8e60eaae 204 Pfam PF02661 Fic/DOC family 62 158 2.3E-16 T 12-10-2018 IPR003812 Fido domain YPK_0608 b4a91662572f82bc01c28afe8e60eaae 204 Gene3D G3DSA:1.10.3290.10 2 204 1.8E-43 T 12-10-2018 IPR036597 Fido-like domain superfamily YPK_0608 b4a91662572f82bc01c28afe8e60eaae 204 SUPERFAMILY SSF140931 48 202 2.22E-33 T 12-10-2018 IPR036597 Fido-like domain superfamily YPK_4126 4fed272958771beac5a282d12c628f05 327 Pfam PF00365 Phosphofructokinase 4 277 5.2E-107 T 12-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 Gene3D G3DSA:3.40.50.450 4 281 1.3E-113 T 12-10-2018 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 122 139 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 214 226 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 160 176 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 140 158 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 178 195 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 241 263 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 2.6E-82 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 Gene3D G3DSA:3.40.50.460 144 253 1.3E-113 T 12-10-2018 YPK_4126 4fed272958771beac5a282d12c628f05 327 SUPERFAMILY SSF53784 3 315 1.83E-108 T 12-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 302 2.8E-120 T 12-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 YPK_4126 4fed272958771beac5a282d12c628f05 327 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 327 44.763 T 12-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 YPK_4126 4fed272958771beac5a282d12c628f05 327 ProSitePatterns PS00433 Phosphofructokinase signature. 245 263 - T 12-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 YPK_4126 4fed272958771beac5a282d12c628f05 327 PIRSF PIRSF000532 1 327 1.1E-123 T 12-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 YPK_3551 6923d3df8a3e321f3f96cbe9b12083bb 536 Pfam PF09850 Type VI secretion system protein DotU 145 336 4.3E-42 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU YPK_3551 6923d3df8a3e321f3f96cbe9b12083bb 536 Gene3D G3DSA:1.25.40.590 140 292 7.1E-34 T 12-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YPK_3551 6923d3df8a3e321f3f96cbe9b12083bb 536 Gene3D G3DSA:3.30.1330.60 355 510 2.5E-33 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_3551 6923d3df8a3e321f3f96cbe9b12083bb 536 SUPERFAMILY SSF103088 385 507 1.01E-20 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_3551 6923d3df8a3e321f3f96cbe9b12083bb 536 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 142 343 1.9E-49 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU YPK_3551 6923d3df8a3e321f3f96cbe9b12083bb 536 Pfam PF00691 OmpA family 398 501 8.5E-11 T 12-10-2018 IPR006665 OmpA-like domain YPK_1601 1943185fbda7494b50a540868fa2e8ec 375 SUPERFAMILY SSF48452 71 167 3.4E-12 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1601 1943185fbda7494b50a540868fa2e8ec 375 Pfam PF02698 DUF218 domain 204 320 1.3E-21 T 12-10-2018 IPR003848 Domain of unknown function DUF218 YPK_1601 1943185fbda7494b50a540868fa2e8ec 375 Gene3D G3DSA:1.25.40.10 29 243 3.4E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2669 254e9bb73396fc3b5b6be9bcd83b8173 230 Gene3D G3DSA:3.40.50.300 1 230 1.5E-86 T 12-10-2018 YPK_2669 254e9bb73396fc3b5b6be9bcd83b8173 230 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 5.0E-92 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 YPK_2669 254e9bb73396fc3b5b6be9bcd83b8173 230 SUPERFAMILY SSF52540 6 224 3.05E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2669 254e9bb73396fc3b5b6be9bcd83b8173 230 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 33.924 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 YPK_2669 254e9bb73396fc3b5b6be9bcd83b8173 230 Pfam PF02224 Cytidylate kinase 8 221 3.1E-81 T 12-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 YPK_0266 c048cf293135021ed37c6271bb938952 602 Gene3D G3DSA:3.40.50.720 400 561 8.8E-36 T 12-10-2018 YPK_0266 c048cf293135021ed37c6271bb938952 602 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 283 1.6E-88 T 12-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 YPK_0266 c048cf293135021ed37c6271bb938952 602 Pfam PF02254 TrkA-N domain 403 513 1.9E-24 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 YPK_0266 c048cf293135021ed37c6271bb938952 602 Pfam PF00999 Sodium/hydrogen exchanger family 10 373 1.7E-67 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 YPK_0266 c048cf293135021ed37c6271bb938952 602 Gene3D G3DSA:1.20.1530.20 3 386 8.4E-81 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily YPK_0266 c048cf293135021ed37c6271bb938952 602 SUPERFAMILY SSF51735 402 529 3.36E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0266 c048cf293135021ed37c6271bb938952 602 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 599 50.763 T 12-10-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 YPK_2971 6e0750c5470509e9b55745bc6fc86eab 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 1.6E-35 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 YPK_2971 6e0750c5470509e9b55745bc6fc86eab 115 SUPERFAMILY SSF81343 5 114 1.24E-28 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2971 6e0750c5470509e9b55745bc6fc86eab 115 Gene3D G3DSA:1.20.1300.10 1 115 3.9E-30 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2971 6e0750c5470509e9b55745bc6fc86eab 115 PIRSF PIRSF000169 1 115 5.3E-41 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 YPK_0117 baae08e9c5bad01324a573ed68546c30 256 Pfam PF04445 Putative SAM-dependent methyltransferase 22 249 1.6E-107 T 12-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 YPK_0117 baae08e9c5bad01324a573ed68546c30 256 Gene3D G3DSA:3.40.1630.10 4 59 1.2E-28 T 12-10-2018 YPK_0117 baae08e9c5bad01324a573ed68546c30 256 Gene3D G3DSA:3.40.50.150 60 253 1.0E-72 T 12-10-2018 YPK_0117 baae08e9c5bad01324a573ed68546c30 256 SUPERFAMILY SSF53335 9 249 2.67E-74 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0117 baae08e9c5bad01324a573ed68546c30 256 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 6 251 38.078 T 12-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 YPK_1715 1d7ab1845d371887b336f0e39cf3c31c 223 SMART SM00862 145 220 8.4E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1715 1d7ab1845d371887b336f0e39cf3c31c 223 SMART SM00448 1 112 2.4E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1715 1d7ab1845d371887b336f0e39cf3c31c 223 Pfam PF00072 Response regulator receiver domain 3 112 3.4E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1715 1d7ab1845d371887b336f0e39cf3c31c 223 Gene3D G3DSA:1.10.10.10 123 223 4.6E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1715 1d7ab1845d371887b336f0e39cf3c31c 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 3.4E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1715 1d7ab1845d371887b336f0e39cf3c31c 223 SUPERFAMILY SSF52172 1 174 2.42E-38 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1715 1d7ab1845d371887b336f0e39cf3c31c 223 Gene3D G3DSA:3.40.50.2300 1 120 6.6E-40 T 12-10-2018 YPK_3277 6c06332a057275de8b84524376834884 414 Pfam PF00149 Calcineurin-like phosphoesterase 1 97 4.7E-13 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YPK_3277 6c06332a057275de8b84524376834884 414 Gene3D G3DSA:3.60.21.10 1 281 3.3E-88 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like YPK_3277 6c06332a057275de8b84524376834884 414 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 282 378 2.0E-24 T 12-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain YPK_3277 6c06332a057275de8b84524376834884 414 Gene3D G3DSA:3.30.160.720 283 345 1.4E-25 T 12-10-2018 YPK_3277 6c06332a057275de8b84524376834884 414 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 4.6E-76 T 12-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 YPK_3277 6c06332a057275de8b84524376834884 414 SUPERFAMILY SSF56300 1 340 2.66E-59 T 12-10-2018 YPK_1693 5d84072c28e831e740c7f984a2cdbe1b 269 Pfam PF01026 TatD related DNase 4 255 2.0E-76 T 12-10-2018 IPR001130 TatD family GO:0016788 YPK_1693 5d84072c28e831e740c7f984a2cdbe1b 269 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YPK_1693 5d84072c28e831e740c7f984a2cdbe1b 269 PIRSF PIRSF005902 1 259 1.1E-72 T 12-10-2018 IPR001130 TatD family GO:0016788 YPK_1693 5d84072c28e831e740c7f984a2cdbe1b 269 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 256 4.3E-92 T 12-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 YPK_1693 5d84072c28e831e740c7f984a2cdbe1b 269 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 126 136 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YPK_1693 5d84072c28e831e740c7f984a2cdbe1b 269 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YPK_1693 5d84072c28e831e740c7f984a2cdbe1b 269 SUPERFAMILY SSF51556 1 259 6.43E-86 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_1693 5d84072c28e831e740c7f984a2cdbe1b 269 Gene3D G3DSA:3.20.20.140 1 264 4.9E-99 T 12-10-2018 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 Gene3D G3DSA:3.30.1360.120 6 231 1.7E-89 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 SUPERFAMILY SSF103025 3 277 7.38E-93 T 12-10-2018 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 PIRSF PIRSF006487 1 363 1.3E-81 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 SUPERFAMILY SSF101790 276 360 2.13E-24 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 Gene3D G3DSA:2.40.30.110 277 365 9.7E-34 T 12-10-2018 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 Gene3D G3DSA:3.30.70.1400 51 138 1.7E-89 T 12-10-2018 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 43.759 T 12-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 5.3E-84 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 Gene3D G3DSA:4.10.1250.10 232 276 1.1E-26 T 12-10-2018 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 358 1.8E-152 T 12-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 YPK_0867 3c49fbdf77d9c26dbe5ad1a131e4a111 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 353 3.8E-19 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Pfam PF01842 ACT domain 837 897 5.7E-9 T 12-10-2018 IPR002912 ACT domain YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF55021 835 906 2.79E-10 T 12-10-2018 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Pfam PF08335 GlnD PII-uridylyltransferase 213 352 5.6E-37 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 35 912 342.275 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF81301 21 210 7.91E-24 T 12-10-2018 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 69 906 6.4E-301 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Gene3D G3DSA:1.10.3210.10 479 593 1.1E-7 T 12-10-2018 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Pfam PF01966 HD domain 489 622 1.8E-13 T 12-10-2018 IPR006674 HD domain YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Gene3D G3DSA:3.30.70.260 833 909 3.7E-5 T 12-10-2018 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF109604 478 579 9.74E-14 T 12-10-2018 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 Pfam PF01909 Nucleotidyltransferase domain 105 167 6.7E-7 T 12-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF81891 450 669 3.24E-9 T 12-10-2018 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF81593 230 349 1.57E-10 T 12-10-2018 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SMART SM00471 485 632 3.6E-11 T 12-10-2018 IPR003607 HD/PDEase domain YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 PIRSF PIRSF006288 47 912 0.0 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 YPK_1064 24c32cb4bd3f9a4ec9ca77117b298d0b 912 SUPERFAMILY SSF55021 726 785 5.73E-9 T 12-10-2018 YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 Pfam PF01339 CheB methylesterase 159 336 1.4E-62 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 Gene3D G3DSA:3.40.50.180 148 349 2.5E-84 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 Gene3D G3DSA:3.40.50.2300 1 133 9.7E-31 T 12-10-2018 YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 PIRSF PIRSF000876 1 346 1.3E-137 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 342 41.328 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 SUPERFAMILY SSF52738 156 343 2.22E-75 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 Pfam PF00072 Response regulator receiver domain 6 109 2.2E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 SUPERFAMILY SSF52172 1 108 1.99E-27 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1757 89f839375ddeb026bc1b3f64350ec2b3 349 SMART SM00448 4 119 2.6E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1621 6a887b09f683c844656f3ee2ad172dbe 562 PIRSF PIRSF029745 3 562 3.6E-163 T 12-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 YPK_1621 6a887b09f683c844656f3ee2ad172dbe 562 Pfam PF08479 POTRA domain, ShlB-type 77 153 3.0E-25 T 12-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_1621 6a887b09f683c844656f3ee2ad172dbe 562 Gene3D G3DSA:3.10.20.310 71 153 1.2E-7 T 12-10-2018 YPK_1621 6a887b09f683c844656f3ee2ad172dbe 562 Gene3D G3DSA:2.40.160.50 186 562 7.7E-103 T 12-10-2018 YPK_1621 6a887b09f683c844656f3ee2ad172dbe 562 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 213 526 2.6E-110 T 12-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YPK_1621 6a887b09f683c844656f3ee2ad172dbe 562 Pfam PF17287 POTRA domain 154 208 6.2E-20 T 12-10-2018 IPR035251 ShlB, POTRA domain YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 205 2.9E-40 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 12-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 8.7E-26 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 494 1.4E-59 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 SUPERFAMILY SSF52096 2 303 3.7E-70 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 52.264 T 12-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 Gene3D G3DSA:3.40.50.720 314 496 6.9E-65 T 12-10-2018 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 Gene3D G3DSA:3.90.226.10 1 311 5.9E-95 T 12-10-2018 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 SUPERFAMILY SSF48179 495 611 7.82E-30 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 12-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 Gene3D G3DSA:1.10.1040.50 497 709 9.1E-74 T 12-10-2018 YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 SUPERFAMILY SSF51735 316 495 3.78E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3933 d4c966b52c51418b7bf1c499cdac892b 729 SUPERFAMILY SSF48179 622 714 1.62E-22 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_3896 03046036fbf4ba59cc84cc9df49d2433 327 SUPERFAMILY SSF46785 21 101 3.33E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3896 03046036fbf4ba59cc84cc9df49d2433 327 Gene3D G3DSA:3.40.190.10 179 280 1.9E-52 T 12-10-2018 YPK_3896 03046036fbf4ba59cc84cc9df49d2433 327 SUPERFAMILY SSF53850 105 310 3.08E-37 T 12-10-2018 YPK_3896 03046036fbf4ba59cc84cc9df49d2433 327 Pfam PF03466 LysR substrate binding domain 105 309 5.1E-33 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_3896 03046036fbf4ba59cc84cc9df49d2433 327 Gene3D G3DSA:3.40.190.10 108 306 1.9E-52 T 12-10-2018 YPK_3896 03046036fbf4ba59cc84cc9df49d2433 327 Gene3D G3DSA:1.10.10.10 20 107 3.3E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3896 03046036fbf4ba59cc84cc9df49d2433 327 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 78 1.3E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3590 3e4d4a45eb2b8cfecfba22d75630d56c 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 3.2E-33 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3590 3e4d4a45eb2b8cfecfba22d75630d56c 87 Gene3D G3DSA:1.20.58.110 1 87 3.8E-31 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3590 3e4d4a45eb2b8cfecfba22d75630d56c 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.359 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3590 3e4d4a45eb2b8cfecfba22d75630d56c 87 SUPERFAMILY SSF46992 3 86 1.44E-31 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3590 3e4d4a45eb2b8cfecfba22d75630d56c 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 87 1.0E-28 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3590 3e4d4a45eb2b8cfecfba22d75630d56c 87 Pfam PF01649 Ribosomal protein S20 2 84 1.0E-27 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_2872 b4c6535889cf4480ef10d0d8ccf0046d 533 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 239 530 4.0E-129 T 12-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type YPK_2872 b4c6535889cf4480ef10d0d8ccf0046d 533 Pfam PF02653 Branched-chain amino acid transport system / permease component 241 516 1.0E-49 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_2872 b4c6535889cf4480ef10d0d8ccf0046d 533 Gene3D G3DSA:1.25.10.10 110 238 5.4E-9 T 12-10-2018 IPR011989 Armadillo-like helical YPK_2872 b4c6535889cf4480ef10d0d8ccf0046d 533 Pfam PF13646 HEAT repeats 176 230 1.1E-8 T 12-10-2018 YPK_2872 b4c6535889cf4480ef10d0d8ccf0046d 533 SUPERFAMILY SSF48371 122 229 1.01E-11 T 12-10-2018 IPR016024 Armadillo-type fold YPK_3830 333d37c656d1a0692bb7a5e3454dace7 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3830 333d37c656d1a0692bb7a5e3454dace7 185 SUPERFAMILY SSF54862 1 162 1.78E-39 T 12-10-2018 YPK_3830 333d37c656d1a0692bb7a5e3454dace7 185 Gene3D G3DSA:3.30.70.20 64 134 4.3E-27 T 12-10-2018 YPK_3830 333d37c656d1a0692bb7a5e3454dace7 185 Gene3D G3DSA:3.30.70.20 6 159 4.3E-27 T 12-10-2018 YPK_3830 333d37c656d1a0692bb7a5e3454dace7 185 Pfam PF12800 4Fe-4S binding domain 12 22 0.14 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3830 333d37c656d1a0692bb7a5e3454dace7 185 Pfam PF13187 4Fe-4S dicluster domain 88 155 5.2E-8 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_2629 6332d2a6d770b92ffdc6836bca6af249 168 Pfam PF03846 Cell division inhibitor SulA 9 120 6.7E-55 T 12-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 YPK_2629 6332d2a6d770b92ffdc6836bca6af249 168 Gene3D G3DSA:3.40.50.300 33 145 2.8E-26 T 12-10-2018 YPK_2629 6332d2a6d770b92ffdc6836bca6af249 168 SUPERFAMILY SSF52540 32 146 9.96E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2629 6332d2a6d770b92ffdc6836bca6af249 168 PIRSF PIRSF003093 1 168 2.5E-87 T 12-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 YPK_2629 6332d2a6d770b92ffdc6836bca6af249 168 Hamap MF_01179 Cell division inhibitor SulA [sulA]. 1 168 40.222 T 12-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 YPK_0098 158eed2ee23d93b712877abed5f90805 429 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site YPK_0098 158eed2ee23d93b712877abed5f90805 429 Pfam PF00375 Sodium:dicarboxylate symporter family 9 401 1.1E-111 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 YPK_0098 158eed2ee23d93b712877abed5f90805 429 SUPERFAMILY SSF118215 9 401 1.05E-121 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YPK_0098 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 9.5E-29 T 12-10-2018 YPK_0098 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 9.5E-29 T 12-10-2018 YPK_0098 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 9.5E-29 T 12-10-2018 YPK_0098 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 9.5E-29 T 12-10-2018 YPK_0098 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 9.5E-29 T 12-10-2018 YPK_0098 158eed2ee23d93b712877abed5f90805 429 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 9.5E-29 T 12-10-2018 YPK_0098 158eed2ee23d93b712877abed5f90805 429 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 428 38.62 T 12-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 YPK_0098 158eed2ee23d93b712877abed5f90805 429 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site YPK_0098 158eed2ee23d93b712877abed5f90805 429 Gene3D G3DSA:1.10.3860.10 1 418 1.9E-119 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YPK_2742 ab07d713af53ba26135617a562136bb4 328 Pfam PF09383 NIL domain 255 326 1.9E-13 T 12-10-2018 IPR018449 NIL domain YPK_2742 ab07d713af53ba26135617a562136bb4 328 SMART SM00382 30 226 1.8E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2742 ab07d713af53ba26135617a562136bb4 328 Pfam PF00005 ABC transporter 21 169 1.4E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2742 ab07d713af53ba26135617a562136bb4 328 Gene3D G3DSA:3.30.70.260 247 328 1.1E-6 T 12-10-2018 YPK_2742 ab07d713af53ba26135617a562136bb4 328 SUPERFAMILY SSF52540 1 236 2.1E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2742 ab07d713af53ba26135617a562136bb4 328 Gene3D G3DSA:3.40.50.300 1 238 1.8E-72 T 12-10-2018 YPK_2742 ab07d713af53ba26135617a562136bb4 328 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2742 ab07d713af53ba26135617a562136bb4 328 SMART SM00930 251 328 2.2E-10 T 12-10-2018 IPR018449 NIL domain YPK_2742 ab07d713af53ba26135617a562136bb4 328 SUPERFAMILY SSF55021 253 327 2.86E-10 T 12-10-2018 YPK_0550 f2d4e963a1247a4369516008bab923fd 232 Pfam PF09335 SNARE associated Golgi protein 48 172 6.9E-20 T 12-10-2018 IPR032816 SNARE associated Golgi protein YPK_1853 b10956c74c395751ce2282af1d33110e 354 Gene3D G3DSA:2.40.440.10 23 306 3.8E-85 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like YPK_1853 b10956c74c395751ce2282af1d33110e 354 SUPERFAMILY SSF141523 98 235 9.81E-30 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like YPK_1853 b10956c74c395751ce2282af1d33110e 354 Pfam PF03734 L,D-transpeptidase catalytic domain 100 235 1.2E-19 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 YPK_0879 74ba05934c540126db95aba043ff8511 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 473 2.6E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0879 74ba05934c540126db95aba043ff8511 477 Pfam PF14827 Double sensory domain of two-component sensor kinase 55 168 9.9E-7 T 12-10-2018 IPR029150 Double Cache domain 3 YPK_0879 74ba05934c540126db95aba043ff8511 477 Gene3D G3DSA:3.30.565.10 324 476 3.0E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0879 74ba05934c540126db95aba043ff8511 477 Gene3D G3DSA:1.10.287.130 204 316 5.3E-13 T 12-10-2018 YPK_0879 74ba05934c540126db95aba043ff8511 477 SUPERFAMILY SSF55874 311 472 7.47E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0879 74ba05934c540126db95aba043ff8511 477 SMART SM00388 255 320 2.5E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_0879 74ba05934c540126db95aba043ff8511 477 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 319 9.9E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_0879 74ba05934c540126db95aba043ff8511 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 1.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0879 74ba05934c540126db95aba043ff8511 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 1.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0879 74ba05934c540126db95aba043ff8511 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 471 1.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0879 74ba05934c540126db95aba043ff8511 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 1.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0879 74ba05934c540126db95aba043ff8511 477 SUPERFAMILY SSF103190 56 170 1.14E-12 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily YPK_0879 74ba05934c540126db95aba043ff8511 477 SUPERFAMILY SSF47384 254 319 1.24E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_0879 74ba05934c540126db95aba043ff8511 477 SMART SM00387 364 474 6.9E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3771 0c67cb0520820538d8b9fa8b14e9d1db 212 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 45 199 7.9E-68 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YPK_3771 0c67cb0520820538d8b9fa8b14e9d1db 212 SUPERFAMILY SSF55068 8 208 7.72E-81 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YPK_3771 0c67cb0520820538d8b9fa8b14e9d1db 212 Pfam PF01625 Peptide methionine sulfoxide reductase 46 199 8.3E-66 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YPK_3771 0c67cb0520820538d8b9fa8b14e9d1db 212 Gene3D G3DSA:3.30.1060.10 4 212 1.4E-86 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YPK_3771 0c67cb0520820538d8b9fa8b14e9d1db 212 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 43 205 38.44 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 Gene3D G3DSA:2.30.30.790 2 114 3.6E-16 T 12-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 Pfam PF01245 Ribosomal protein L19 3 113 1.2E-49 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 PIRSF PIRSF002191 1 115 1.9E-49 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 SUPERFAMILY SSF50104 2 114 3.11E-47 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 12-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.023 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3361 a1e436bd9273e21431549c822b2d26dd 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 2.8E-52 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 3.2E-30 T 12-10-2018 YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 Gene3D G3DSA:3.40.50.1000 7 185 2.2E-46 T 12-10-2018 IPR023214 HAD superfamily YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 9.3E-59 T 12-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 SUPERFAMILY SSF56784 5 185 3.2E-44 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 7.7E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 7.7E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 7.7E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 122 183 5.8E-14 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3371 978a9f3cc4cc77d2966a9b87f37d3c0e 188 Gene3D G3DSA:1.10.150.240 18 89 2.2E-46 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPK_1580 5a819cb1cd172521f3dbc9066eb9bbe8 438 Pfam PF07690 Major Facilitator Superfamily 17 379 8.7E-55 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_1580 5a819cb1cd172521f3dbc9066eb9bbe8 438 SUPERFAMILY SSF103473 4 415 1.2E-84 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1580 5a819cb1cd172521f3dbc9066eb9bbe8 438 Gene3D G3DSA:1.20.1250.20 2 203 9.6E-47 T 12-10-2018 YPK_1580 5a819cb1cd172521f3dbc9066eb9bbe8 438 Gene3D G3DSA:1.20.1250.20 224 416 5.7E-28 T 12-10-2018 YPK_3754 a003f08a3e1ecdb58017db8afa0382c4 407 Pfam PF00589 Phage integrase family 212 369 5.5E-15 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_3754 a003f08a3e1ecdb58017db8afa0382c4 407 Gene3D G3DSA:3.30.160.390 6 105 3.5E-19 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YPK_3754 a003f08a3e1ecdb58017db8afa0382c4 407 SUPERFAMILY SSF56349 105 375 1.85E-37 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_3754 a003f08a3e1ecdb58017db8afa0382c4 407 Gene3D G3DSA:1.10.443.10 211 384 3.4E-16 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_3754 a003f08a3e1ecdb58017db8afa0382c4 407 Gene3D G3DSA:1.10.150.130 106 210 7.2E-14 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_3754 a003f08a3e1ecdb58017db8afa0382c4 407 Pfam PF13356 Arm DNA-binding domain 7 93 1.8E-14 T 12-10-2018 IPR025166 Integrase, DNA-binding domain YPK_2267 f2bb51f82500d5861a75abc9eb3341cc 216 Gene3D G3DSA:3.10.129.10 55 206 5.2E-49 T 12-10-2018 YPK_2267 f2bb51f82500d5861a75abc9eb3341cc 216 SUPERFAMILY SSF54637 57 208 6.36E-46 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_2267 f2bb51f82500d5861a75abc9eb3341cc 216 Pfam PF01575 MaoC like domain 69 181 3.2E-18 T 12-10-2018 IPR002539 MaoC-like dehydratase domain YPK_2978 c5b6e7f909936f593a6b04b0516ab47f 94 Gene3D G3DSA:3.10.20.280 1 88 1.3E-33 T 12-10-2018 IPR037021 RnfH superfamily YPK_2978 c5b6e7f909936f593a6b04b0516ab47f 94 SUPERFAMILY SSF54285 4 78 6.34E-26 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPK_2978 c5b6e7f909936f593a6b04b0516ab47f 94 Pfam PF03658 RnfH family Ubiquitin 4 86 3.0E-34 T 12-10-2018 IPR005346 RnfH protein YPK_2978 c5b6e7f909936f593a6b04b0516ab47f 94 Hamap MF_00460 Protein RnfH [rnfH]. 4 94 25.914 T 12-10-2018 IPR005346 RnfH protein YPK_0386 7ac72b11336ce431be1d8b2108e18c5f 165 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 5 160 1.1E-54 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_0386 7ac72b11336ce431be1d8b2108e18c5f 165 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 8 159 2.2E-54 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_0386 7ac72b11336ce431be1d8b2108e18c5f 165 PIRSF PIRSF028301 1 165 1.1E-60 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_3649 9b8ee412df9ce51e2c7be12466743a08 331 Gene3D G3DSA:1.10.10.10 16 76 2.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3649 9b8ee412df9ce51e2c7be12466743a08 331 SUPERFAMILY SSF100950 80 330 1.72E-58 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_3649 9b8ee412df9ce51e2c7be12466743a08 331 Pfam PF04198 Putative sugar-binding domain 80 329 2.6E-68 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YPK_3649 9b8ee412df9ce51e2c7be12466743a08 331 Gene3D G3DSA:3.40.50.1360 82 329 1.1E-83 T 12-10-2018 YPK_3713 cd58d170cc67720d4d53617e03638c2b 167 Pfam PF00583 Acetyltransferase (GNAT) family 42 122 5.3E-8 T 12-10-2018 IPR000182 GNAT domain YPK_3713 cd58d170cc67720d4d53617e03638c2b 167 SUPERFAMILY SSF55729 3 152 3.54E-22 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_3713 cd58d170cc67720d4d53617e03638c2b 167 Gene3D G3DSA:3.40.630.30 1 167 2.3E-49 T 12-10-2018 YPK_3940 088eeecaf061baca2bb83d61e0321977 258 ProSitePatterns PS01218 TatC family signature. 154 173 - T 12-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site YPK_3940 088eeecaf061baca2bb83d61e0321977 258 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 241 15.981 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YPK_3940 088eeecaf061baca2bb83d61e0321977 258 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 226 1.5E-77 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YPK_3940 088eeecaf061baca2bb83d61e0321977 258 Pfam PF00902 Sec-independent protein translocase protein (TatC) 12 221 3.0E-64 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YPK_3940 088eeecaf061baca2bb83d61e0321977 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 85 103 2.1E-50 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YPK_3940 088eeecaf061baca2bb83d61e0321977 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 2.1E-50 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YPK_3940 088eeecaf061baca2bb83d61e0321977 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 2.1E-50 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YPK_3940 088eeecaf061baca2bb83d61e0321977 258 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 129 2.1E-50 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 YPK_1513 05aa6410f6aa6072815a5ca6138aad49 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 53.115 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 YPK_1513 05aa6410f6aa6072815a5ca6138aad49 310 Pfam PF05175 Methyltransferase small domain 133 215 1.3E-15 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 YPK_1513 05aa6410f6aa6072815a5ca6138aad49 310 PIRSF PIRSF037167 2 307 2.7E-147 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 YPK_1513 05aa6410f6aa6072815a5ca6138aad49 310 SUPERFAMILY SSF53335 15 294 3.5E-49 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_1513 05aa6410f6aa6072815a5ca6138aad49 310 Gene3D G3DSA:3.40.50.150 109 277 1.5E-44 T 12-10-2018 YPK_1513 05aa6410f6aa6072815a5ca6138aad49 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 301 9.1E-100 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 YPK_1513 05aa6410f6aa6072815a5ca6138aad49 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_1513 05aa6410f6aa6072815a5ca6138aad49 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 1.1E-136 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 YPK_0622 b2875cb5e37ff95f54e4b014ff4da8e5 477 Gene3D G3DSA:3.40.50.300 163 335 9.7E-15 T 12-10-2018 YPK_0622 b2875cb5e37ff95f54e4b014ff4da8e5 477 SUPERFAMILY SSF46785 372 471 3.81E-37 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0622 b2875cb5e37ff95f54e4b014ff4da8e5 477 Pfam PF08706 D5 N terminal like 39 167 6.9E-7 T 12-10-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal YPK_0622 b2875cb5e37ff95f54e4b014ff4da8e5 477 SMART SM00885 37 171 3.7E-18 T 12-10-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal YPK_0622 b2875cb5e37ff95f54e4b014ff4da8e5 477 Pfam PF03288 Poxvirus D5 protein-like 372 457 1.5E-11 T 12-10-2018 IPR004968 DNA primase/nucleoside triphosphatase, C-terminal YPK_0622 b2875cb5e37ff95f54e4b014ff4da8e5 477 SUPERFAMILY SSF52540 180 342 4.43E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0622 b2875cb5e37ff95f54e4b014ff4da8e5 477 Gene3D G3DSA:1.10.10.10 372 471 1.1E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1846 7e35f613360c7915d9abdf71add3c13d 138 Hamap MF_01936 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [menI]. 1 136 42.445 T 12-10-2018 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI GO:0009234|GO:0061522 KEGG: 00130+3.1.2.28|MetaCyc: PWY-5837 YPK_1846 7e35f613360c7915d9abdf71add3c13d 138 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 134 8.2E-46 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 YPK_1846 7e35f613360c7915d9abdf71add3c13d 138 Gene3D G3DSA:3.10.129.10 1 138 3.4E-59 T 12-10-2018 YPK_1846 7e35f613360c7915d9abdf71add3c13d 138 SUPERFAMILY SSF54637 20 136 7.47E-31 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_1846 7e35f613360c7915d9abdf71add3c13d 138 Pfam PF03061 Thioesterase superfamily 50 127 3.0E-16 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 YPK_4103 8c365328ba9c7eae960124b5ef956073 174 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 41.7 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 YPK_4103 8c365328ba9c7eae960124b5ef956073 174 Pfam PF00227 Proteasome subunit 2 165 2.0E-21 T 12-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 YPK_4103 8c365328ba9c7eae960124b5ef956073 174 Gene3D G3DSA:3.60.20.10 1 173 5.3E-67 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_4103 8c365328ba9c7eae960124b5ef956073 174 PIRSF PIRSF039093 1 174 3.1E-87 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 YPK_4103 8c365328ba9c7eae960124b5ef956073 174 SUPERFAMILY SSF56235 2 172 7.73E-58 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_4103 8c365328ba9c7eae960124b5ef956073 174 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 2.2E-86 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 YPK_2874 e65634d85213d45337a9c7e10aab6a82 157 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 3.1E-25 T 12-10-2018 IPR009921 Domain of unknown function DUF1456 YPK_2874 e65634d85213d45337a9c7e10aab6a82 157 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 3.5E-27 T 12-10-2018 IPR009921 Domain of unknown function DUF1456 YPK_0319 86571b6545747ef119ece2133ce8e9dc 179 SUPERFAMILY SSF57783 9 47 1.09E-12 T 12-10-2018 YPK_0319 86571b6545747ef119ece2133ce8e9dc 179 Gene3D G3DSA:3.30.65.10 52 97 2.5E-10 T 12-10-2018 YPK_0319 86571b6545747ef119ece2133ce8e9dc 179 Gene3D G3DSA:3.30.65.10 2 51 3.2E-9 T 12-10-2018 YPK_0319 86571b6545747ef119ece2133ce8e9dc 179 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 11 47 3.0E-15 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YPK_0319 86571b6545747ef119ece2133ce8e9dc 179 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 102 140 7.2E-15 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YPK_0319 86571b6545747ef119ece2133ce8e9dc 179 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 60 96 2.3E-17 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 YPK_0319 86571b6545747ef119ece2133ce8e9dc 179 SUPERFAMILY SSF57783 58 96 9.52E-14 T 12-10-2018 YPK_0319 86571b6545747ef119ece2133ce8e9dc 179 SUPERFAMILY SSF57783 99 136 6.29E-5 T 12-10-2018 YPK_2720 262a040ffccb965b862e130d364e8811 363 Gene3D G3DSA:3.40.50.1980 23 360 4.4E-78 T 12-10-2018 YPK_2720 262a040ffccb965b862e130d364e8811 363 Pfam PF01497 Periplasmic binding protein 83 307 1.6E-27 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_2720 262a040ffccb965b862e130d364e8811 363 SUPERFAMILY SSF53807 24 331 7.85E-40 T 12-10-2018 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 Pfam PF13180 PDZ domain 294 367 2.5E-12 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 Gene3D G3DSA:2.40.10.10 53 161 9.7E-29 T 12-10-2018 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 23 370 1.3E-157 T 12-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 Gene3D G3DSA:2.40.10.10 162 276 5.4E-39 T 12-10-2018 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 PRINTS PR00834 HtrA/DegQ protease family signature 131 151 1.7E-46 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 PRINTS PR00834 HtrA/DegQ protease family signature 110 122 1.7E-46 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 PRINTS PR00834 HtrA/DegQ protease family signature 206 223 1.7E-46 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 PRINTS PR00834 HtrA/DegQ protease family signature 171 195 1.7E-46 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 PRINTS PR00834 HtrA/DegQ protease family signature 228 245 1.7E-46 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 PRINTS PR00834 HtrA/DegQ protease family signature 317 329 1.7E-46 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 SUPERFAMILY SSF50494 66 274 5.51E-59 T 12-10-2018 IPR009003 Peptidase S1, PA clan YPK_0519 dcb1de8727356653e582d902d3a628b1 383 SMART SM00228 277 359 1.0E-12 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 Pfam PF13365 Trypsin-like peptidase domain 101 235 5.8E-27 T 12-10-2018 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 SUPERFAMILY SSF50156 250 371 4.73E-21 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 YPK_0519 dcb1de8727356653e582d902d3a628b1 383 Gene3D G3DSA:2.30.42.10 277 379 1.3E-21 T 12-10-2018 YPK_1816 26fd68ff51b191d93a0a40c17edef47c 220 SUPERFAMILY SSF53955 53 217 1.66E-29 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_1816 26fd68ff51b191d93a0a40c17edef47c 220 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 75 103 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YPK_1816 26fd68ff51b191d93a0a40c17edef47c 220 Gene3D G3DSA:1.10.530.10 40 218 2.8E-45 T 12-10-2018 YPK_1816 26fd68ff51b191d93a0a40c17edef47c 220 Pfam PF01464 Transglycosylase SLT domain 57 182 5.8E-29 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 SUPERFAMILY SSF51735 435 685 2.91E-57 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 573 601 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 SUPERFAMILY SSF53639 26 228 1.51E-33 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 Gene3D G3DSA:3.40.50.720 419 686 1.6E-56 T 12-10-2018 YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 Gene3D G3DSA:3.40.225.10 25 232 6.8E-54 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 446 681 5.0E-42 T 12-10-2018 YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 607 624 1.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 586 605 1.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 441 458 1.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 512 523 1.2E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 SMART SM01007 28 227 2.7E-30 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_2413 df33c29ad76795fd4fb0ea86e01b697d 688 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 33 224 1.9E-23 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 491 6.3E-164 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 Gene3D G3DSA:3.40.1190.10 105 341 7.5E-87 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 424 4.7E-25 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 491 34.008 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 Gene3D G3DSA:3.90.190.20 342 494 4.0E-56 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 SUPERFAMILY SSF63418 5 103 6.02E-24 T 12-10-2018 IPR035911 MurE/MurF, N-terminal YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 SUPERFAMILY SSF53623 105 338 2.75E-76 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 Gene3D G3DSA:3.40.1390.10 2 104 1.1E-32 T 12-10-2018 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 SUPERFAMILY SSF53244 339 491 1.68E-51 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 Pfam PF08245 Mur ligase middle domain 114 318 2.0E-49 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YPK_3523 ecb40b8513e3a67a15a2978346c7b329 495 Pfam PF01225 Mur ligase family, catalytic domain 25 102 6.2E-12 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 YPK_2664 f985fc74f2c0c6cea852a04715774e7e 328 SUPERFAMILY SSF52540 46 177 3.04E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2664 f985fc74f2c0c6cea852a04715774e7e 328 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 13 317 1.2E-114 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 YPK_2664 f985fc74f2c0c6cea852a04715774e7e 328 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 321 40.666 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 YPK_2664 f985fc74f2c0c6cea852a04715774e7e 328 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 320 3.8E-106 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 277 56.517 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 PIRSF PIRSF000166 2 303 1.1E-127 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 Pfam PF01218 Coproporphyrinogen III oxidase 9 302 3.2E-131 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 Gene3D G3DSA:3.40.1500.10 1 302 2.5E-134 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 166 190 - T 12-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 SUPERFAMILY SSF102886 5 302 7.59E-139 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 262 288 8.7E-86 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 48 69 8.7E-86 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 90 114 8.7E-86 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 162 191 8.7E-86 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 31 47 8.7E-86 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 125 147 8.7E-86 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1393 8ecb64d120c024a3322f2028315e855a 309 PRINTS PR00073 Coprogen oxidase signature 234 261 8.7E-86 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 YPK_1768 13f29385582a9f010a067b631c8915da 418 Pfam PF01734 Patatin-like phospholipase 86 271 3.2E-24 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 YPK_1768 13f29385582a9f010a067b631c8915da 418 SUPERFAMILY SSF52151 86 271 2.09E-32 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPK_1768 13f29385582a9f010a067b631c8915da 418 Gene3D G3DSA:3.40.1090.10 70 195 1.2E-12 T 12-10-2018 YPK_1887 78b57ce2b637affa3b54e05506883c17 426 Gene3D G3DSA:1.20.1290.10 125 231 1.6E-5 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YPK_1887 78b57ce2b637affa3b54e05506883c17 426 SUPERFAMILY SSF69118 282 425 1.77E-21 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YPK_1887 78b57ce2b637affa3b54e05506883c17 426 SUPERFAMILY SSF69118 92 229 2.45E-12 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YPK_1887 78b57ce2b637affa3b54e05506883c17 426 Gene3D G3DSA:1.20.1290.10 309 426 1.3E-20 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 Gene3D G3DSA:3.40.50.1000 336 686 5.5E-290 T 12-10-2018 IPR023214 HAD superfamily YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 498 516 1.6E-19 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 613 629 1.6E-19 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 641 657 1.6E-19 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 673 698 1.6E-19 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 Gene3D G3DSA:1.20.1110.10 69 896 5.5E-290 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 SUPERFAMILY SSF81653 128 238 1.23E-30 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 Pfam PF00689 Cation transporting ATPase, C-terminus 726 897 1.7E-42 T 12-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 Pfam PF00122 E1-E2 ATPase 126 319 4.6E-55 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 Gene3D G3DSA:3.40.1110.10 349 547 5.5E-290 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 Gene3D G3DSA:2.70.150.10 33 241 5.5E-290 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 Pfam PF00690 Cation transporter/ATPase, N-terminus 19 85 3.6E-21 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 562 572 1.3E-40 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 665 677 1.3E-40 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 540 551 1.3E-40 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 176 190 1.3E-40 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 660 1.3E-40 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 339 353 1.3E-40 T 12-10-2018 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 SUPERFAMILY SSF81660 346 544 6.54E-46 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 341 347 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 98 204 2.9E-20 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 609 730 4.9E-35 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 230 360 5.8E-23 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 SUPERFAMILY SSF81665 18 901 5.1E-119 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 SUPERFAMILY SSF56784 337 744 7.5E-62 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 SMART SM00831 18 91 7.0E-34 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 YPK_3614 c820b15ed53f4f8d901d4ae6e251c616 908 Pfam PF00702 haloacid dehalogenase-like hydrolase 335 655 7.8E-24 T 12-10-2018 YPK_1662 ecc3f8fdd2bd05682831676c1d5d9b6d 869 SUPERFAMILY SSF53448 266 553 6.08E-27 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1662 ecc3f8fdd2bd05682831676c1d5d9b6d 869 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 88 767 51.215 T 12-10-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 YPK_1662 ecc3f8fdd2bd05682831676c1d5d9b6d 869 Gene3D G3DSA:3.90.550.10 262 490 1.9E-13 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1662 ecc3f8fdd2bd05682831676c1d5d9b6d 869 Pfam PF00535 Glycosyl transferase family 2 268 450 8.3E-23 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YPK_3887 dac91b2b712cd37355d2a46f50e668a2 216 Gene3D G3DSA:3.40.50.720 1 209 2.4E-37 T 12-10-2018 YPK_3887 dac91b2b712cd37355d2a46f50e668a2 216 Pfam PF13460 NAD(P)H-binding 8 195 5.1E-36 T 12-10-2018 IPR016040 NAD(P)-binding domain YPK_3887 dac91b2b712cd37355d2a46f50e668a2 216 SUPERFAMILY SSF51735 4 206 5.89E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0655 a264fbdf510f077e983dfc44e53e81cc 210 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 14 199 4.9E-78 T 12-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 YPK_0655 a264fbdf510f077e983dfc44e53e81cc 210 Gene3D G3DSA:3.90.79.10 2 209 5.6E-66 T 12-10-2018 YPK_0655 a264fbdf510f077e983dfc44e53e81cc 210 Pfam PF00293 NUDIX domain 59 179 5.4E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_0655 a264fbdf510f077e983dfc44e53e81cc 210 SUPERFAMILY SSF55811 9 205 2.03E-49 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_0655 a264fbdf510f077e983dfc44e53e81cc 210 ProSitePatterns PS00893 Nudix box signature. 97 118 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_3670 d98e60f3c8205d184004fbbfd767e761 61 Pfam PF13973 Domain of unknown function (DUF4222) 8 56 1.1E-19 T 12-10-2018 IPR025317 Protein of unknown function DUF4222 YPK_1775 6337442f81d7147f80128714089469d2 250 Gene3D G3DSA:2.60.40.10 35 151 1.8E-11 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1775 6337442f81d7147f80128714089469d2 250 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 36 151 4.7E-19 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_1775 6337442f81d7147f80128714089469d2 250 SUPERFAMILY SSF49354 23 154 7.85E-27 T 12-10-2018 IPR008962 PapD-like superfamily YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 SUPERFAMILY SSF50182 920 985 1.08E-16 T 12-10-2018 IPR010920 LSM domain superfamily YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 Gene3D G3DSA:3.30.70.100 988 1081 3.2E-20 T 12-10-2018 YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 SUPERFAMILY SSF82689 987 1087 3.92E-26 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 Pfam PF00924 Mechanosensitive ion channel 877 1076 2.7E-58 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 Gene3D G3DSA:2.30.30.60 935 984 4.8E-13 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 Pfam PF12795 Mechanosensitive ion channel porin domain 40 278 8.2E-62 T 12-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 498 816 5.5E-100 T 12-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 SUPERFAMILY SSF82861 835 918 1.7E-8 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 YPK_3204 29b2c0ff1008d22c01eb1ed653487b20 1120 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 949 983 - T 12-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 YPK_2766 98ae1ede1774e021465e926f42b5c543 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 320 2.3E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_2812 2dccdb4d893c145932fd3180b7abacde 151 Pfam PF07409 Phage protein GP46 30 136 2.9E-41 T 12-10-2018 IPR010877 Bacteriophage Mu, Gp46 YPK_3840 065c335552de16ac31456b58aeb0aa05 344 TIGRFAM TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein 8 342 1.2E-97 T 12-10-2018 YPK_3840 065c335552de16ac31456b58aeb0aa05 344 Hamap MF_01532 L-rhamnose-proton symporter [rhaT]. 1 344 42.992 T 12-10-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 YPK_3840 065c335552de16ac31456b58aeb0aa05 344 Pfam PF06379 L-rhamnose-proton symport protein (RhaT) 1 344 2.7E-227 T 12-10-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 YPK_3280 a497bd137dc88c9d3c78850d03b86f54 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 1.4E-129 T 12-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 YPK_3280 a497bd137dc88c9d3c78850d03b86f54 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 41.975 T 12-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 YPK_1714 04667f915525686addd558946e31b142 468 Gene3D G3DSA:1.10.287.130 198 305 3.3E-8 T 12-10-2018 YPK_1714 04667f915525686addd558946e31b142 468 SUPERFAMILY SSF47384 231 306 6.08E-5 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_1714 04667f915525686addd558946e31b142 468 SMART SM00388 248 312 0.0017 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1714 04667f915525686addd558946e31b142 468 Pfam PF08918 PhoQ Sensor 1 169 2.1E-82 T 12-10-2018 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 YPK_1714 04667f915525686addd558946e31b142 468 SUPERFAMILY SSF55874 319 459 5.76E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1714 04667f915525686addd558946e31b142 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 459 5.3E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1714 04667f915525686addd558946e31b142 468 Gene3D G3DSA:3.30.450.140 26 177 3.5E-65 T 12-10-2018 IPR038429 PhoQ Sensor superfamily YPK_1714 04667f915525686addd558946e31b142 468 SMART SM00387 357 463 1.3E-23 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1714 04667f915525686addd558946e31b142 468 Gene3D G3DSA:3.30.565.10 318 467 1.2E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1714 04667f915525686addd558946e31b142 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 7.0E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1714 04667f915525686addd558946e31b142 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 7.0E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3287 23fd135e90142bf68af7c9c9fede3b94 419 Gene3D G3DSA:3.40.309.10 224 376 2.2E-160 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_3287 23fd135e90142bf68af7c9c9fede3b94 419 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 11 408 8.6E-185 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YPK_3287 23fd135e90142bf68af7c9c9fede3b94 419 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 3 418 40.79 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YPK_3287 23fd135e90142bf68af7c9c9fede3b94 419 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 325 346 - T 12-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 YPK_3287 23fd135e90142bf68af7c9c9fede3b94 419 Gene3D G3DSA:3.40.605.10 16 413 2.2E-160 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_3287 23fd135e90142bf68af7c9c9fede3b94 419 PIRSF PIRSF000151 1 419 4.8E-171 T 12-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 YPK_3287 23fd135e90142bf68af7c9c9fede3b94 419 SUPERFAMILY SSF53720 4 414 3.4E-111 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_3287 23fd135e90142bf68af7c9c9fede3b94 419 Pfam PF00171 Aldehyde dehydrogenase family 6 282 1.8E-13 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_2488 53d0676c93c743ffef02e18ba0dedf10 283 Gene3D G3DSA:3.30.200.20 16 126 7.5E-5 T 12-10-2018 YPK_2488 53d0676c93c743ffef02e18ba0dedf10 283 Gene3D G3DSA:1.10.510.10 135 229 1.2E-18 T 12-10-2018 YPK_2488 53d0676c93c743ffef02e18ba0dedf10 283 Pfam PF01163 RIO1 family 31 219 9.7E-44 T 12-10-2018 YPK_2488 53d0676c93c743ffef02e18ba0dedf10 283 SUPERFAMILY SSF56112 18 226 4.87E-21 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily YPK_2488 53d0676c93c743ffef02e18ba0dedf10 283 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 12-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 YPK_2488 53d0676c93c743ffef02e18ba0dedf10 283 SMART SM00090 5 228 2.5E-15 T 12-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 YPK_3353 5565edec86bfc43d6dbc973239766659 120 Gene3D G3DSA:3.30.160.100 1 107 1.4E-36 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like YPK_3353 5565edec86bfc43d6dbc973239766659 120 SUPERFAMILY SSF69754 3 107 1.57E-31 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like YPK_3353 5565edec86bfc43d6dbc973239766659 120 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 2.6E-32 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 YPK_3353 5565edec86bfc43d6dbc973239766659 120 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 1.1E-20 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 YPK_0220 b07319b306a95336b07bbca9923c0974 298 Pfam PF11104 Type IV pilus assembly protein PilM; 9 167 4.4E-18 T 12-10-2018 IPR005883 Type IV pilus assembly protein PilM YPK_0220 b07319b306a95336b07bbca9923c0974 298 Gene3D G3DSA:3.30.1490.300 82 137 1.8E-12 T 12-10-2018 YPK_0220 b07319b306a95336b07bbca9923c0974 298 Gene3D G3DSA:3.30.420.40 8 168 1.8E-12 T 12-10-2018 YPK_0220 b07319b306a95336b07bbca9923c0974 298 SUPERFAMILY SSF53067 29 165 2.85E-6 T 12-10-2018 YPK_0468 7ad248668a8ac0b339c193b2a9746291 197 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 4.0E-63 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 YPK_0468 7ad248668a8ac0b339c193b2a9746291 197 Gene3D G3DSA:3.90.950.10 2 189 2.9E-72 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_0468 7ad248668a8ac0b339c193b2a9746291 197 SUPERFAMILY SSF52972 2 184 2.94E-59 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like YPK_0468 7ad248668a8ac0b339c193b2a9746291 197 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 31.197 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 YPK_0468 7ad248668a8ac0b339c193b2a9746291 197 Pfam PF02545 Maf-like protein 4 184 5.7E-57 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 YPK_0468 7ad248668a8ac0b339c193b2a9746291 197 PIRSF PIRSF006305 1 191 1.0E-49 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 SUPERFAMILY SSF52279 381 607 4.84E-48 T 12-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 Gene3D G3DSA:2.60.40.10 607 720 4.7E-32 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 381 604 4.6E-44 T 12-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 Pfam PF14310 Fibronectin type III-like domain 641 710 3.8E-17 T 12-10-2018 IPR026891 Fibronectin type III-like domain YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 194 210 2.1E-20 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 92 108 2.1E-20 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 111 130 2.1E-20 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 264 282 2.1E-20 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 157 173 2.1E-20 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 Gene3D G3DSA:3.40.50.1700 367 606 1.2E-66 T 12-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 SUPERFAMILY SSF51445 3 380 4.74E-110 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 SMART SM01217 641 710 5.9E-26 T 12-10-2018 IPR026891 Fibronectin type III-like domain YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 24 342 5.6E-76 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_0593 a6a6862e5cdef96ad120de9f7e8f29e8 727 Gene3D G3DSA:3.20.20.300 12 364 4.6E-120 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 SUPERFAMILY SSF53335 51 572 1.86E-125 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 Gene3D G3DSA:1.20.1260.30 46 226 3.6E-52 T 12-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 Gene3D G3DSA:3.40.50.150 230 521 8.0E-83 T 12-10-2018 YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 Pfam PF02384 N-6 DNA Methylase 209 524 1.6E-99 T 12-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 TIGRFAM TIGR00497 hsdM: type I restriction-modification system, M subunit 51 533 4.3E-101 T 12-10-2018 IPR004546 Restriction endonuclease, type I, HsdM GO:0003677|GO:0009007|GO:0009307 YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 Pfam PF12161 HsdM N-terminal domain 53 197 1.3E-15 T 12-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 349 355 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 346 358 9.3E-20 T 12-10-2018 YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 232 248 9.3E-20 T 12-10-2018 YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 380 404 9.3E-20 T 12-10-2018 YPK_3672 9f52dd4aa61c2986702ae45013f5880a 910 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 260 274 9.3E-20 T 12-10-2018 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 Pfam PF00448 SRP54-type protein, GTPase domain 320 519 1.1E-77 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 SUPERFAMILY SSF52540 316 519 5.87E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 Gene3D G3DSA:1.20.120.140 222 518 5.8E-117 T 12-10-2018 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 248 520 65.048 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 Pfam PF02881 SRP54-type protein, helical bundle domain 236 301 1.2E-12 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 248 519 4.0E-115 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 SMART SM00962 319 520 1.3E-122 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 SUPERFAMILY SSF47364 220 299 3.66E-22 T 12-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 493 506 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 Gene3D G3DSA:3.40.50.300 317 508 5.8E-117 T 12-10-2018 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 SMART SM00963 225 305 2.1E-24 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 YPK_3979 8d11e61f2cc8bf19b806cfabc51b5e6c 523 SMART SM00382 318 498 6.9E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3032 3f100158d7e838615e194740672b2537 159 Pfam PF00313 'Cold-shock' DNA-binding domain 1 61 6.6E-10 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_3032 3f100158d7e838615e194740672b2537 159 Gene3D G3DSA:2.40.50.140 1 68 5.5E-18 T 12-10-2018 YPK_3032 3f100158d7e838615e194740672b2537 159 SUPERFAMILY SSF50249 2 62 1.05E-10 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 ProSitePatterns PS00622 LuxR-type HTH domain signature. 196 223 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 SUPERFAMILY SSF75516 2 162 4.18E-36 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 234 1.3E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 212 224 2.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 212 2.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 196 2.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 SUPERFAMILY SSF46894 178 242 7.14E-16 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 Gene3D G3DSA:3.30.450.80 1 177 7.7E-68 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 SMART SM00421 179 236 1.3E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 Gene3D G3DSA:1.10.10.10 178 243 4.0E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1655 b412f76fb45737753ea47e0cc45c66fb 245 Pfam PF03472 Autoinducer binding domain 13 157 1.0E-28 T 12-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain YPK_2689 c617b7a916cd54420a615b6801979b18 574 SUPERFAMILY SSF90123 7 327 1.29E-40 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2689 c617b7a916cd54420a615b6801979b18 574 SUPERFAMILY SSF52540 335 572 1.96E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2689 c617b7a916cd54420a615b6801979b18 574 Pfam PF00664 ABC transporter transmembrane region 63 287 4.4E-9 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_2689 c617b7a916cd54420a615b6801979b18 574 SMART SM00382 365 550 4.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2689 c617b7a916cd54420a615b6801979b18 574 Pfam PF00005 ABC transporter 356 503 7.0E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2689 c617b7a916cd54420a615b6801979b18 574 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2689 c617b7a916cd54420a615b6801979b18 574 Gene3D G3DSA:3.40.50.300 330 574 8.3E-78 T 12-10-2018 YPK_2689 c617b7a916cd54420a615b6801979b18 574 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 8 534 2.7E-156 T 12-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 YPK_2689 c617b7a916cd54420a615b6801979b18 574 Gene3D G3DSA:1.20.1560.10 3 321 1.1E-26 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_4082 e04923a7ce3a5af69ca6ae0ec8165c8a 267 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 186 264 5.9E-19 T 12-10-2018 IPR037682 TonB, C-terminal GO:0055085 YPK_4082 e04923a7ce3a5af69ca6ae0ec8165c8a 267 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 186 265 1.9E-22 T 12-10-2018 IPR006260 TonB/TolA, C-terminal YPK_4082 e04923a7ce3a5af69ca6ae0ec8165c8a 267 SUPERFAMILY SSF74653 165 265 1.96E-22 T 12-10-2018 YPK_4082 e04923a7ce3a5af69ca6ae0ec8165c8a 267 Gene3D G3DSA:3.30.1150.10 111 265 7.1E-31 T 12-10-2018 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 2.8E-96 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 9.0E-135 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 Gene3D G3DSA:1.20.210.10 30 565 3.5E-189 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 12-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 YPK_3242 c7740246da51ef6159bc73f5a49cbcd2 663 SUPERFAMILY SSF81442 43 560 3.14E-179 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_3737 83666caa3e500841ab9d45a6f5eda363 209 Gene3D G3DSA:3.40.50.150 30 208 2.9E-61 T 12-10-2018 YPK_3737 83666caa3e500841ab9d45a6f5eda363 209 Pfam PF01728 FtsJ-like methyltransferase 31 206 1.9E-58 T 12-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 YPK_3737 83666caa3e500841ab9d45a6f5eda363 209 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 20 206 1.8E-94 T 12-10-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 YPK_3737 83666caa3e500841ab9d45a6f5eda363 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 27.559 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 YPK_3737 83666caa3e500841ab9d45a6f5eda363 209 SUPERFAMILY SSF53335 31 207 1.02E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3737 83666caa3e500841ab9d45a6f5eda363 209 PIRSF PIRSF005461 1 209 1.1E-81 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 323 348 4.5E-99 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 364 382 4.5E-99 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 140 166 4.5E-99 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 233 254 4.5E-99 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 4.5E-99 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 255 274 4.5E-99 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 4.5E-99 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 4.5E-99 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 SUPERFAMILY SSF53720 10 434 1.31E-86 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 Pfam PF00815 Histidinol dehydrogenase 31 430 3.5E-165 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 10 430 40.978 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 Gene3D G3DSA:3.40.50.1980 36 235 2.1E-122 T 12-10-2018 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 PIRSF PIRSF000099 3 433 3.4E-167 T 12-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 429 2.9E-159 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 Gene3D G3DSA:3.40.50.1980 237 352 2.1E-122 T 12-10-2018 YPK_2526 cb24e7a1ad19c2a5b3ff5c4e5b40351b 443 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 233 265 - T 12-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 YPK_0438 2f199fc5e81ce6de6212838ee3f64b15 448 SUPERFAMILY SSF63829 96 296 7.19E-6 T 12-10-2018 YPK_0438 2f199fc5e81ce6de6212838ee3f64b15 448 Pfam PF13449 Esterase-like activity of phytase 90 421 4.9E-65 T 12-10-2018 IPR027372 Phytase-like domain YPK_2217 f0efd2bbcf7a84b6ad0e64e42cd39479 335 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 117 190 2.8E-21 T 12-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YPK_2217 f0efd2bbcf7a84b6ad0e64e42cd39479 335 Gene3D G3DSA:3.40.47.10 10 334 3.2E-87 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2217 f0efd2bbcf7a84b6ad0e64e42cd39479 335 SUPERFAMILY SSF53901 13 333 1.03E-45 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2217 f0efd2bbcf7a84b6ad0e64e42cd39479 335 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 246 333 7.2E-24 T 12-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 YPK_4118 8bf821008795b685ed755a8dab024242 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 61.046 T 12-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_4118 8bf821008795b685ed755a8dab024242 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 3.5E-95 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_4118 8bf821008795b685ed755a8dab024242 255 SUPERFAMILY SSF51351 1 250 2.23E-90 T 12-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_4118 8bf821008795b685ed755a8dab024242 255 Gene3D G3DSA:3.20.20.70 1 255 5.6E-102 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_4118 8bf821008795b685ed755a8dab024242 255 Pfam PF00121 Triosephosphate isomerase 5 246 4.8E-92 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_4118 8bf821008795b685ed755a8dab024242 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 12-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_3362 9db0890cf84c80cd7849017cf3213fb0 246 Gene3D G3DSA:3.40.1280.10 1 160 1.6E-67 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_3362 9db0890cf84c80cd7849017cf3213fb0 246 PIRSF PIRSF000386 1 245 9.0E-102 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YPK_3362 9db0890cf84c80cd7849017cf3213fb0 246 SUPERFAMILY SSF75217 1 244 3.53E-102 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases YPK_3362 9db0890cf84c80cd7849017cf3213fb0 246 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 246 119.798 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YPK_3362 9db0890cf84c80cd7849017cf3213fb0 246 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 233 1.9E-110 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YPK_3362 9db0890cf84c80cd7849017cf3213fb0 246 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 4.7E-70 T 12-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YPK_3362 9db0890cf84c80cd7849017cf3213fb0 246 Gene3D G3DSA:1.10.1270.20 161 246 1.1E-35 T 12-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 YPK_1530 8cf783548f0e6631195270410c351170 220 Pfam PF09335 SNARE associated Golgi protein 49 177 6.2E-27 T 12-10-2018 IPR032816 SNARE associated Golgi protein YPK_0486 a586569151d39ca215c05ce10ba8d53d 489 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 36 482 1.5E-202 T 12-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 YPK_0486 a586569151d39ca215c05ce10ba8d53d 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YPK_0486 a586569151d39ca215c05ce10ba8d53d 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 288 299 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YPK_0486 a586569151d39ca215c05ce10ba8d53d 489 Gene3D G3DSA:3.40.605.10 27 479 3.9E-180 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_0486 a586569151d39ca215c05ce10ba8d53d 489 SUPERFAMILY SSF53720 15 487 1.96E-168 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_0486 a586569151d39ca215c05ce10ba8d53d 489 Pfam PF00171 Aldehyde dehydrogenase family 29 483 5.6E-170 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_0486 a586569151d39ca215c05ce10ba8d53d 489 Gene3D G3DSA:3.40.309.10 267 456 3.9E-180 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_3160 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 7.8E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 7.8E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 7.8E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 7.8E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.8E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_3160 4f97295b59848490394b745bd61fa45d 258 Gene3D G3DSA:3.40.50.720 2 244 3.7E-61 T 12-10-2018 YPK_3160 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 3.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 182 0.0064 T 12-10-2018 YPK_3160 4f97295b59848490394b745bd61fa45d 258 Pfam PF00106 short chain dehydrogenase 3 191 2.9E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3160 4f97295b59848490394b745bd61fa45d 258 SUPERFAMILY SSF51735 3 254 1.58E-57 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0744 575e6f14f017426757d62d28240a684a 622 Gene3D G3DSA:3.80.10.10 30 315 3.3E-57 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily YPK_0744 575e6f14f017426757d62d28240a684a 622 SMART SM00364 107 126 1.1 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 SMART SM00364 232 251 1.4 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 SMART SM00364 128 147 0.083 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 SMART SM00364 170 189 8.5 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 SMART SM00364 84 106 25.0 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 SMART SM00364 190 209 8.6E-4 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 SMART SM00364 211 230 1.3 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 SMART SM00364 253 272 1.4 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 Pfam PF12468 Type III secretion system leucine rich repeat protein 1 59 1.9E-17 T 12-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YPK_0744 575e6f14f017426757d62d28240a684a 622 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 330 545 2.2E-73 T 12-10-2018 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 MetaCyc: PWY-7511 YPK_0744 575e6f14f017426757d62d28240a684a 622 Gene3D G3DSA:1.20.58.90 542 612 4.2E-25 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 Gene3D G3DSA:1.20.58.360 403 541 3.2E-49 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 Gene3D G3DSA:1.20.1270.130 321 402 2.3E-26 T 12-10-2018 YPK_0744 575e6f14f017426757d62d28240a684a 622 SUPERFAMILY SSF52058 67 301 4.76E-32 T 12-10-2018 YPK_2365 84393c36b84f3675dffd14e76a3c269c 376 Gene3D G3DSA:1.20.1420.20 129 376 5.8E-99 T 12-10-2018 IPR038352 Imelysin-like domain superfamily YPK_2365 84393c36b84f3675dffd14e76a3c269c 376 SUPERFAMILY SSF49503 18 116 1.66E-6 T 12-10-2018 IPR008972 Cupredoxin YPK_2365 84393c36b84f3675dffd14e76a3c269c 376 Gene3D G3DSA:2.60.40.420 20 118 3.2E-5 T 12-10-2018 IPR008972 Cupredoxin YPK_2365 84393c36b84f3675dffd14e76a3c269c 376 Pfam PF13473 Cupredoxin-like domain 14 116 2.0E-23 T 12-10-2018 IPR028096 EfeO-type cupredoxin-like domain YPK_2365 84393c36b84f3675dffd14e76a3c269c 376 Pfam PF09375 Imelysin 137 369 6.4E-45 T 12-10-2018 IPR018976 Imelysin-like domain YPK_4155 13f0a0c8e0ce38c84603441951afeb6d 222 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 171 176 - T 12-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site YPK_4155 13f0a0c8e0ce38c84603441951afeb6d 222 Hamap MF_00018 UPF0758 protein YicR [yicR]. 2 222 52.775 T 12-10-2018 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily YPK_4155 13f0a0c8e0ce38c84603441951afeb6d 222 TIGRFAM TIGR00608 radc: DNA repair protein RadC 10 222 3.7E-82 T 12-10-2018 IPR001405 Uncharacterised protein family UPF0758 YPK_4155 13f0a0c8e0ce38c84603441951afeb6d 222 SUPERFAMILY SSF47781 16 83 5.34E-11 T 12-10-2018 IPR010994 RuvA domain 2-like YPK_4155 13f0a0c8e0ce38c84603441951afeb6d 222 Pfam PF04002 RadC-like JAB domain 107 220 2.0E-43 T 12-10-2018 IPR025657 RadC-like JAB domain YPK_4155 13f0a0c8e0ce38c84603441951afeb6d 222 Gene3D G3DSA:3.40.140.10 101 222 9.2E-44 T 12-10-2018 YPK_3345 d5ab80b3820aa3c78e26862baba2faf4 113 PIRSF PIRSF034456 8 113 3.8E-58 T 12-10-2018 IPR017028 Uncharacterised conserved protein UCP034456 YPK_3345 d5ab80b3820aa3c78e26862baba2faf4 113 Pfam PF10043 Predicted periplasmic lipoprotein (DUF2279) 31 109 7.5E-7 T 12-10-2018 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein YPK_1069 884eb179a33cfe769963dc2d44f6206a 185 Gene3D G3DSA:1.10.132.20 1 34 1.2E-7 T 12-10-2018 YPK_1069 884eb179a33cfe769963dc2d44f6206a 185 Pfam PF01765 Ribosome recycling factor 20 183 2.9E-62 T 12-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 YPK_1069 884eb179a33cfe769963dc2d44f6206a 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 2.5E-79 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 YPK_1069 884eb179a33cfe769963dc2d44f6206a 185 SUPERFAMILY SSF55194 2 184 4.19E-70 T 12-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 YPK_1069 884eb179a33cfe769963dc2d44f6206a 185 Gene3D G3DSA:3.30.1360.40 35 100 6.0E-30 T 12-10-2018 YPK_1069 884eb179a33cfe769963dc2d44f6206a 185 Gene3D G3DSA:1.10.132.20 101 185 6.0E-28 T 12-10-2018 YPK_1069 884eb179a33cfe769963dc2d44f6206a 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.659 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 YPK_2140 ba509b383e614c63835e071caef274d4 318 Pfam PF01297 Zinc-uptake complex component A periplasmic 30 314 1.6E-56 T 12-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 YPK_2140 ba509b383e614c63835e071caef274d4 318 SUPERFAMILY SSF53807 29 318 9.32E-78 T 12-10-2018 YPK_2140 ba509b383e614c63835e071caef274d4 318 Gene3D G3DSA:3.40.50.1980 207 318 2.0E-41 T 12-10-2018 YPK_2140 ba509b383e614c63835e071caef274d4 318 Gene3D G3DSA:3.40.50.1980 29 205 7.4E-56 T 12-10-2018 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 12-10-2018 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 7 21 2.6E-5 T 12-10-2018 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 221 240 2.6E-5 T 12-10-2018 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 244 256 2.6E-5 T 12-10-2018 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 6.9E-64 T 12-10-2018 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 Gene3D G3DSA:3.40.50.1000 4 267 9.4E-62 T 12-10-2018 IPR023214 HAD superfamily YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 Gene3D G3DSA:3.30.1240.10 84 196 9.4E-62 T 12-10-2018 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 267 1.5E-64 T 12-10-2018 IPR000150 Cof family GO:0016787 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 240 6.2E-24 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 YPK_2934 3bd4d349896aeaf83f41663f7f34969c 273 SUPERFAMILY SSF56784 1 271 2.36E-67 T 12-10-2018 IPR036412 HAD-like superfamily YPK_1683 92fc272180de3d740530a42229f5cb97 344 PIRSF PIRSF002465 2 344 8.4E-125 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 YPK_1683 92fc272180de3d740530a42229f5cb97 344 SUPERFAMILY SSF53659 5 340 1.07E-102 T 12-10-2018 YPK_1683 92fc272180de3d740530a42229f5cb97 344 Pfam PF02504 Fatty acid synthesis protein 5 331 2.9E-117 T 12-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 YPK_1683 92fc272180de3d740530a42229f5cb97 344 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 344 142.095 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 YPK_1683 92fc272180de3d740530a42229f5cb97 344 Gene3D G3DSA:3.40.718.10 3 343 5.9E-123 T 12-10-2018 YPK_1683 92fc272180de3d740530a42229f5cb97 344 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 342 5.8E-134 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 YPK_1180 4e9381a0f3b959285a00f504e3fef721 252 SUPERFAMILY SSF53335 19 206 7.02E-33 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_1180 4e9381a0f3b959285a00f504e3fef721 252 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 18 252 56.391 T 12-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 YPK_1180 4e9381a0f3b959285a00f504e3fef721 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 123 135 8.5E-5 T 12-10-2018 YPK_1180 4e9381a0f3b959285a00f504e3fef721 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 153 177 8.5E-5 T 12-10-2018 YPK_1180 4e9381a0f3b959285a00f504e3fef721 252 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 55 69 8.5E-5 T 12-10-2018 YPK_1180 4e9381a0f3b959285a00f504e3fef721 252 Gene3D G3DSA:3.40.50.150 18 248 6.4E-59 T 12-10-2018 YPK_1180 4e9381a0f3b959285a00f504e3fef721 252 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 126 132 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_1180 4e9381a0f3b959285a00f504e3fef721 252 Pfam PF05175 Methyltransferase small domain 48 183 5.3E-15 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 YPK_0129 982548f24b9612e4856db2dd77133b51 286 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0129 982548f24b9612e4856db2dd77133b51 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 8 284 3.7E-91 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0129 982548f24b9612e4856db2dd77133b51 286 SUPERFAMILY SSF51569 3 284 1.61E-86 T 12-10-2018 YPK_0129 982548f24b9612e4856db2dd77133b51 286 Gene3D G3DSA:3.20.20.70 1 286 9.5E-95 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0129 982548f24b9612e4856db2dd77133b51 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 285 6.4E-80 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0129 982548f24b9612e4856db2dd77133b51 286 PIRSF PIRSF001359 1 286 3.0E-102 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 Pfam PF04545 Sigma-70, region 4 264 317 2.7E-15 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 12 330 39.924 T 12-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 SUPERFAMILY SSF88659 169 243 8.72E-15 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 Gene3D G3DSA:1.10.10.10 169 244 5.7E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 Gene3D G3DSA:1.10.10.10 246 322 1.0E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 Pfam PF04539 Sigma-70 region 3 176 250 2.5E-20 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 SUPERFAMILY SSF88946 58 166 1.96E-45 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 Gene3D G3DSA:1.10.601.10 86 168 5.5E-46 T 12-10-2018 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 50 330 3.6E-144 T 12-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 Pfam PF00140 Sigma-70 factor, region 1.2 58 89 5.1E-11 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 289 315 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 PRINTS PR00046 Major sigma-70 factor signature 268 280 2.5E-27 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 PRINTS PR00046 Major sigma-70 factor signature 304 315 2.5E-27 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 PRINTS PR00046 Major sigma-70 factor signature 289 304 2.5E-27 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 PRINTS PR00046 Major sigma-70 factor signature 120 133 2.5E-27 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 PRINTS PR00046 Major sigma-70 factor signature 144 152 2.5E-27 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 Pfam PF04542 Sigma-70 region 2 96 165 3.2E-21 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 SUPERFAMILY SSF88659 227 324 1.68E-23 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 93 319 4.2E-35 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 YPK_3425 03e9d7d0b280ffd118c8e849e1d8b881 332 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 120 133 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 YPK_3889 2866c47e5abfbb9bc609bb09f1922411 676 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 51 - T 12-10-2018 IPR010916 TonB box, conserved site YPK_3889 2866c47e5abfbb9bc609bb09f1922411 676 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 44 676 2.1E-197 T 12-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 YPK_3889 2866c47e5abfbb9bc609bb09f1922411 676 Gene3D G3DSA:2.40.170.20 167 676 3.6E-125 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_3889 2866c47e5abfbb9bc609bb09f1922411 676 Gene3D G3DSA:2.170.130.10 43 166 1.5E-42 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_3889 2866c47e5abfbb9bc609bb09f1922411 676 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 161 4.1E-24 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_3889 2866c47e5abfbb9bc609bb09f1922411 676 SUPERFAMILY SSF56935 44 676 2.31E-98 T 12-10-2018 YPK_3889 2866c47e5abfbb9bc609bb09f1922411 676 Pfam PF00593 TonB dependent receptor 274 674 3.3E-44 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_3889 2866c47e5abfbb9bc609bb09f1922411 676 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 44 676 3.7E-155 T 12-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 YPK_1863 f1e444536e34755d43395963fff58871 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 4.8E-35 T 12-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 12-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 Gene3D G3DSA:1.10.287.990 20 82 7.0E-27 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 SUPERFAMILY SSF46609 1 83 1.83E-36 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 PIRSF PIRSF000349 1 192 1.5E-88 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 1.4E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 1.4E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.4E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.4E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 1.4E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 Gene3D G3DSA:2.40.500.20 83 192 1.6E-44 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 1.2E-40 T 12-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_1863 f1e444536e34755d43395963fff58871 192 SUPERFAMILY SSF54719 82 191 1.15E-44 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 YPK_2642 9f28a7d550dfbc9569da88f7073cb2d7 369 Pfam PF03473 MOSC domain 139 261 2.6E-28 T 12-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 YPK_2642 9f28a7d550dfbc9569da88f7073cb2d7 369 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 298 361 2.0E-12 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YPK_2642 9f28a7d550dfbc9569da88f7073cb2d7 369 SUPERFAMILY SSF141673 4 132 1.83E-29 T 12-10-2018 YPK_2642 9f28a7d550dfbc9569da88f7073cb2d7 369 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 322 330 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YPK_2642 9f28a7d550dfbc9569da88f7073cb2d7 369 SUPERFAMILY SSF50800 4 263 7.85E-17 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily YPK_2642 9f28a7d550dfbc9569da88f7073cb2d7 369 SUPERFAMILY SSF54292 282 366 1.13E-20 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_2642 9f28a7d550dfbc9569da88f7073cb2d7 369 Gene3D G3DSA:3.10.20.30 275 368 9.0E-17 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_2642 9f28a7d550dfbc9569da88f7073cb2d7 369 Pfam PF03476 MOSC N-terminal beta barrel domain 2 116 1.4E-29 T 12-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 YPK_4162 a2eb9819ff1dbba43ac9cb359d0a6ce1 422 Pfam PF13356 Arm DNA-binding domain 4 90 2.4E-11 T 12-10-2018 IPR025166 Integrase, DNA-binding domain YPK_4162 a2eb9819ff1dbba43ac9cb359d0a6ce1 422 Gene3D G3DSA:1.10.443.10 214 399 4.5E-22 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_4162 a2eb9819ff1dbba43ac9cb359d0a6ce1 422 SUPERFAMILY SSF56349 108 393 2.18E-54 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_4162 a2eb9819ff1dbba43ac9cb359d0a6ce1 422 Pfam PF00589 Phage integrase family 214 384 1.6E-16 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_4162 a2eb9819ff1dbba43ac9cb359d0a6ce1 422 Gene3D G3DSA:1.10.150.130 105 213 7.7E-40 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_4162 a2eb9819ff1dbba43ac9cb359d0a6ce1 422 Gene3D G3DSA:3.30.160.390 2 104 1.7E-17 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YPK_1637 8019d31bc7516a99bcf4808b16dff99c 351 Pfam PF04041 beta-1,4-mannooligosaccharide phosphorylase 107 345 3.5E-53 T 12-10-2018 IPR007184 Mannoside phosphorylase YPK_1637 8019d31bc7516a99bcf4808b16dff99c 351 PIRSF PIRSF016202 3 351 5.5E-115 T 12-10-2018 IPR007184 Mannoside phosphorylase YPK_1637 8019d31bc7516a99bcf4808b16dff99c 351 SUPERFAMILY SSF75005 2 341 9.42E-77 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YPK_3929 be3f866ea3256aad93926d701766fb6d 177 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 12-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 YPK_3929 be3f866ea3256aad93926d701766fb6d 177 Pfam PF12724 Flavodoxin domain 4 151 3.8E-56 T 12-10-2018 IPR026816 Flavodoxin domain YPK_3929 be3f866ea3256aad93926d701766fb6d 177 SUPERFAMILY SSF52218 1 169 5.9E-35 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_3929 be3f866ea3256aad93926d701766fb6d 177 Gene3D G3DSA:3.40.50.360 1 110 1.4E-14 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_3632 5cf3a694337a5866486b66a8da2d98d2 204 Pfam PF04972 BON domain 137 204 2.5E-18 T 12-10-2018 IPR007055 BON domain YPK_3632 5cf3a694337a5866486b66a8da2d98d2 204 Pfam PF04972 BON domain 57 124 2.1E-22 T 12-10-2018 IPR007055 BON domain YPK_3632 5cf3a694337a5866486b66a8da2d98d2 204 SMART SM00749 62 125 9.5E-11 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YPK_3632 5cf3a694337a5866486b66a8da2d98d2 204 SMART SM00749 141 204 2.6E-12 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YPK_1878 80fd90e18e706b221cbedcec303435e3 370 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 367 41.236 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 YPK_1878 80fd90e18e706b221cbedcec303435e3 370 Gene3D G3DSA:3.30.420.40 145 327 4.7E-132 T 12-10-2018 YPK_1878 80fd90e18e706b221cbedcec303435e3 370 Gene3D G3DSA:3.30.420.40 11 362 4.7E-132 T 12-10-2018 YPK_1878 80fd90e18e706b221cbedcec303435e3 370 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 5 366 3.1E-163 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 YPK_1878 80fd90e18e706b221cbedcec303435e3 370 SUPERFAMILY SSF53067 6 341 8.85E-28 T 12-10-2018 YPK_0127 c85ee702d511a1216898b04ded8720e9 314 Gene3D G3DSA:3.40.50.2300 129 304 7.8E-109 T 12-10-2018 YPK_0127 c85ee702d511a1216898b04ded8720e9 314 SUPERFAMILY SSF53822 7 308 3.53E-78 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0127 c85ee702d511a1216898b04ded8720e9 314 Gene3D G3DSA:3.40.50.2300 34 293 7.8E-109 T 12-10-2018 YPK_0127 c85ee702d511a1216898b04ded8720e9 314 Pfam PF13407 Periplasmic binding protein domain 30 286 1.1E-55 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_2765 ec26f93d2a79ac18b4b2a7ecae72f1f1 151 SUPERFAMILY SSF55811 4 139 3.79E-34 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_2765 ec26f93d2a79ac18b4b2a7ecae72f1f1 151 Pfam PF00293 NUDIX domain 5 126 3.3E-28 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_2765 ec26f93d2a79ac18b4b2a7ecae72f1f1 151 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_2765 ec26f93d2a79ac18b4b2a7ecae72f1f1 151 Gene3D G3DSA:3.90.79.10 1 132 8.9E-38 T 12-10-2018 YPK_2765 ec26f93d2a79ac18b4b2a7ecae72f1f1 151 PRINTS PR00502 NUDIX hydrolase family signature 45 60 4.6E-9 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_2765 ec26f93d2a79ac18b4b2a7ecae72f1f1 151 PRINTS PR00502 NUDIX hydrolase family signature 31 45 4.6E-9 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_3333 92ae38458b8dcf3e37aaf80d3369ac73 155 Gene3D G3DSA:3.10.450.50 27 155 1.1E-49 T 12-10-2018 YPK_3333 92ae38458b8dcf3e37aaf80d3369ac73 155 Pfam PF11533 Protein of unknown function (DUF3225) 32 154 1.2E-61 T 12-10-2018 IPR024507 Protein of unknown function DUF3225 YPK_3333 92ae38458b8dcf3e37aaf80d3369ac73 155 SUPERFAMILY SSF54427 31 153 4.5E-40 T 12-10-2018 IPR032710 NTF2-like domain superfamily YPK_1974 27677470ea3b036a09aea71de4166e2f 506 Pfam PF00171 Aldehyde dehydrogenase family 35 493 6.8E-159 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_1974 27677470ea3b036a09aea71de4166e2f 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YPK_1974 27677470ea3b036a09aea71de4166e2f 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YPK_1974 27677470ea3b036a09aea71de4166e2f 506 Gene3D G3DSA:3.40.309.10 265 463 3.4E-162 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_1974 27677470ea3b036a09aea71de4166e2f 506 SUPERFAMILY SSF53720 10 497 1.83E-158 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_1974 27677470ea3b036a09aea71de4166e2f 506 Gene3D G3DSA:3.40.605.10 36 491 3.4E-162 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_2761 9991e3c8c8b813deba1212e854329697 214 SUPERFAMILY SSF46894 6 92 5.39E-14 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_2761 9991e3c8c8b813deba1212e854329697 214 SMART SM00862 18 92 1.5E-8 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_2761 9991e3c8c8b813deba1212e854329697 214 Pfam PF00486 Transcriptional regulatory protein, C terminal 20 91 6.7E-14 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_2761 9991e3c8c8b813deba1212e854329697 214 Gene3D G3DSA:1.10.10.10 3 93 2.8E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0679 af835c6467fc70d9cd90543c729d05cb 256 Gene3D G3DSA:1.25.40.10 13 237 2.9E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_0679 af835c6467fc70d9cd90543c729d05cb 256 SUPERFAMILY SSF48452 55 225 5.4E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 Gene3D G3DSA:1.10.10.2730 233 279 3.6E-16 T 12-10-2018 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 Gene3D G3DSA:1.10.10.60 176 232 6.7E-13 T 12-10-2018 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 SUPERFAMILY SSF46689 181 224 4.3E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 247 262 7.9E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 262 278 7.9E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 SMART SM00342 195 278 2.6E-26 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 SUPERFAMILY SSF46689 232 284 1.97E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 232 274 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_3661 00242f91f0f0129dc64f8fc10a76a251 291 Pfam PF12833 Helix-turn-helix domain 202 280 1.5E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0616 6bae1a8a3aa5f42566f2fb058a3dda4c 65 Pfam PF12728 Helix-turn-helix domain 8 57 2.8E-10 T 12-10-2018 YPK_0616 6bae1a8a3aa5f42566f2fb058a3dda4c 65 SUPERFAMILY SSF46955 8 59 1.45E-7 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_0616 6bae1a8a3aa5f42566f2fb058a3dda4c 65 Gene3D G3DSA:1.10.1660.10 5 64 2.8E-5 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 Hamap MF_01498 DNA repair protein RadA [radA]. 22 458 42.847 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 YPK_3621 530293d5077ef74ecf579c674a791268 460 SUPERFAMILY SSF52540 71 290 4.59E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3621 530293d5077ef74ecf579c674a791268 460 Gene3D G3DSA:3.40.50.300 69 282 1.9E-38 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 127 144 1.2E-93 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 216 244 1.2E-93 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 177 201 1.2E-93 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 325 348 1.2E-93 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 11 35 1.2E-93 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 86 114 1.2E-93 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 PRINTS PR01874 DNA repair protein radA signature 251 277 1.2E-93 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 454 2.4E-232 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 YPK_3621 530293d5077ef74ecf579c674a791268 460 SUPERFAMILY SSF54211 258 458 2.35E-42 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3621 530293d5077ef74ecf579c674a791268 460 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 433 3.7E-9 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 Pfam PF13481 AAA domain 88 225 2.3E-13 T 12-10-2018 YPK_3621 530293d5077ef74ecf579c674a791268 460 Gene3D G3DSA:3.30.230.10 306 460 2.2E-21 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3621 530293d5077ef74ecf579c674a791268 460 SMART SM00382 94 248 1.9E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 Gene3D G3DSA:3.40.50.300 1 214 1.6E-79 T 12-10-2018 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 52.104 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 2.9E-75 T 12-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 Pfam PF00406 Adenylate kinase 5 185 5.8E-60 T 12-10-2018 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 SUPERFAMILY SSF52540 1 212 1.67E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 81 97 7.2E-35 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 4 17 7.2E-35 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 173 187 7.2E-35 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 32 46 7.2E-35 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 PRINTS PR00094 Adenylate kinase signature 156 171 7.2E-35 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.0E-15 T 12-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 YPK_3194 e3d67f84f33b1e03915aa37cee641e97 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 12-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 Gene3D G3DSA:3.40.710.10 243 377 3.3E-10 T 12-10-2018 YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 785 4.1E-172 T 12-10-2018 YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 SUPERFAMILY SSF53955 43 257 6.47E-80 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 Gene3D G3DSA:1.10.3810.10 48 242 5.8E-80 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 Pfam PF00905 Penicillin binding protein transpeptidase domain 429 610 4.4E-25 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 Pfam PF17092 Penicillin-binding protein OB-like domain 316 425 4.5E-31 T 12-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 SUPERFAMILY SSF56601 211 833 3.5E-114 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 Pfam PF00912 Transglycosylase 55 229 4.7E-65 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 Gene3D G3DSA:3.40.710.10 399 614 1.3E-67 T 12-10-2018 YPK_0219 7b78db8a6bc37e8184a63d589b1355f9 851 Gene3D G3DSA:3.40.710.10 636 836 7.3E-25 T 12-10-2018 YPK_0255 29997a20f319fe900db3c6f619c63f97 78 PIRSF PIRSF006169 1 76 2.3E-36 T 12-10-2018 IPR010648 Uncharacterised protein family UPF0270 YPK_0255 29997a20f319fe900db3c6f619c63f97 78 SUPERFAMILY SSF118001 1 71 2.48E-28 T 12-10-2018 IPR036685 YehU-like superfamily YPK_0255 29997a20f319fe900db3c6f619c63f97 78 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 67 1.2E-33 T 12-10-2018 IPR010648 Uncharacterised protein family UPF0270 YPK_0255 29997a20f319fe900db3c6f619c63f97 78 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 9.0E-27 T 12-10-2018 IPR010648 Uncharacterised protein family UPF0270 YPK_0255 29997a20f319fe900db3c6f619c63f97 78 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 24.09 T 12-10-2018 IPR010648 Uncharacterised protein family UPF0270 YPK_0255 29997a20f319fe900db3c6f619c63f97 78 Gene3D G3DSA:1.10.10.610 1 75 7.3E-29 T 12-10-2018 IPR036685 YehU-like superfamily YPK_3568 808a6acd1a87a26b5436001cb1d24e59 206 Pfam PF00849 RNA pseudouridylate synthase 9 156 1.6E-28 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3568 808a6acd1a87a26b5436001cb1d24e59 206 Gene3D G3DSA:3.30.2350.10 1 206 6.1E-72 T 12-10-2018 YPK_3568 808a6acd1a87a26b5436001cb1d24e59 206 SUPERFAMILY SSF55120 3 203 6.08E-62 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3568 808a6acd1a87a26b5436001cb1d24e59 206 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 47 61 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 339 352 - T 12-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 Gene3D G3DSA:3.50.50.60 42 268 3.8E-81 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 Gene3D G3DSA:3.50.50.60 300 447 1.3E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 SUPERFAMILY SSF51905 45 429 2.18E-61 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 200 215 5.2E-19 T 12-10-2018 YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 325 340 5.2E-19 T 12-10-2018 YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 46 68 5.2E-19 T 12-10-2018 YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 356 5.2E-19 T 12-10-2018 YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 46 435 4.0E-140 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 YPK_0865 53c51fa0e93520cb2608b1f643a06c97 447 Pfam PF01494 FAD binding domain 46 390 2.0E-29 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 YPK_0495 975e9ccf61a1713767e9d69f0266b18f 471 Pfam PF02378 Phosphotransferase system, EIIC 112 404 2.6E-33 T 12-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YPK_0495 975e9ccf61a1713767e9d69f0266b18f 471 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 12-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YPK_0495 975e9ccf61a1713767e9d69f0266b18f 471 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 7.9E-16 T 12-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 YPK_0495 975e9ccf61a1713767e9d69f0266b18f 471 Gene3D G3DSA:3.30.1360.60 3 78 5.2E-23 T 12-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YPK_0495 975e9ccf61a1713767e9d69f0266b18f 471 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 6 460 2.8E-211 T 12-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 YPK_0495 975e9ccf61a1713767e9d69f0266b18f 471 Pfam PF00367 phosphotransferase system, EIIB 11 41 6.5E-13 T 12-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YPK_0495 975e9ccf61a1713767e9d69f0266b18f 471 SUPERFAMILY SSF55604 10 81 3.27E-20 T 12-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YPK_3584 65ef14a273b79b1a50994b706605036c 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 269 35.153 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_3584 65ef14a273b79b1a50994b706605036c 273 PIRSF PIRSF000161 4 272 1.1E-89 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_3584 65ef14a273b79b1a50994b706605036c 273 SUPERFAMILY SSF51735 4 272 4.6E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3584 65ef14a273b79b1a50994b706605036c 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 268 1.3E-105 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_3584 65ef14a273b79b1a50994b706605036c 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 154 171 - T 12-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_3584 65ef14a273b79b1a50994b706605036c 273 Gene3D G3DSA:3.40.50.720 7 268 9.6E-103 T 12-10-2018 YPK_3584 65ef14a273b79b1a50994b706605036c 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 2.9E-42 T 12-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_3584 65ef14a273b79b1a50994b706605036c 273 Gene3D G3DSA:3.30.360.10 131 238 9.6E-103 T 12-10-2018 YPK_3584 65ef14a273b79b1a50994b706605036c 273 SUPERFAMILY SSF55347 131 240 1.37E-37 T 12-10-2018 YPK_3584 65ef14a273b79b1a50994b706605036c 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 268 4.9E-42 T 12-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 420 5.5E-153 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 SUPERFAMILY SSF55205 4 424 6.32E-145 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 Gene3D G3DSA:3.65.10.10 242 420 3.6E-157 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 PIRSF PIRSF000505 2 428 1.4E-153 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 427 35.441 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 424 9.5E-142 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 YPK_2670 f04fc7621f2e8ae3262c5660d1237198 428 Gene3D G3DSA:3.65.10.10 21 224 3.6E-157 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 YPK_1353 a7eb306c9077944e09e5665c93cc0ec2 428 Pfam PF00860 Permease family 16 382 7.6E-105 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 YPK_1353 a7eb306c9077944e09e5665c93cc0ec2 428 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 404 1.4E-127 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 YPK_1353 a7eb306c9077944e09e5665c93cc0ec2 428 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 329 349 - T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 YPK_2292 8233c533a625f3fb2f0a6d25fa60c0d4 286 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_2292 8233c533a625f3fb2f0a6d25fa60c0d4 286 Pfam PF00872 Transposase, Mutator family 13 284 1.4E-85 T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_3037 f89c9d189f4b85708619c28f2764b2bb 596 Pfam PF00664 ABC transporter transmembrane region 26 300 5.5E-36 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_3037 f89c9d189f4b85708619c28f2764b2bb 596 Pfam PF00005 ABC transporter 362 511 4.2E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3037 f89c9d189f4b85708619c28f2764b2bb 596 SMART SM00382 371 557 7.1E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3037 f89c9d189f4b85708619c28f2764b2bb 596 Gene3D G3DSA:3.40.50.300 336 594 3.6E-97 T 12-10-2018 YPK_3037 f89c9d189f4b85708619c28f2764b2bb 596 SUPERFAMILY SSF52540 335 582 4.54E-94 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3037 f89c9d189f4b85708619c28f2764b2bb 596 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3037 f89c9d189f4b85708619c28f2764b2bb 596 SUPERFAMILY SSF90123 10 324 1.57E-57 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_3037 f89c9d189f4b85708619c28f2764b2bb 596 Gene3D G3DSA:1.20.1560.10 13 335 5.1E-112 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_3318 6242a6061ea2d6be2a080ad9450b7275 346 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 40 334 3.3E-90 T 12-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 YPK_3318 6242a6061ea2d6be2a080ad9450b7275 346 Pfam PF01008 Initiation factor 2 subunit family 53 334 3.7E-64 T 12-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 YPK_3318 6242a6061ea2d6be2a080ad9450b7275 346 Gene3D G3DSA:3.40.50.10470 142 340 7.0E-65 T 12-10-2018 YPK_3318 6242a6061ea2d6be2a080ad9450b7275 346 Gene3D G3DSA:1.20.120.420 6 141 9.8E-30 T 12-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 YPK_3318 6242a6061ea2d6be2a080ad9450b7275 346 SUPERFAMILY SSF100950 16 339 3.41E-106 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_3318 6242a6061ea2d6be2a080ad9450b7275 346 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 13 333 3.6E-126 T 12-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 YPK_3318 6242a6061ea2d6be2a080ad9450b7275 346 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 3 345 35.769 T 12-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 YPK_2627 e29ca4eeb27c71f375332cf0bf816da0 712 Pfam PF12805 FUSC-like inner membrane protein yccS 68 348 6.1E-113 T 12-10-2018 IPR032692 Integral membrane protein YccS, N-terminal YPK_2627 e29ca4eeb27c71f375332cf0bf816da0 712 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 10 707 5.5E-290 T 12-10-2018 IPR010020 Integral membrane protein, YccS/YhfK YPK_2627 e29ca4eeb27c71f375332cf0bf816da0 712 Pfam PF13515 Fusaric acid resistance protein-like 408 527 4.2E-23 T 12-10-2018 YPK_2627 e29ca4eeb27c71f375332cf0bf816da0 712 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 10 707 0.0 T 12-10-2018 IPR010019 Integral membrane protein, YccS YPK_1821 c6df74213639dc196672a8cf86c775c9 116 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 24 113 3.2E-36 T 12-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 YPK_1821 c6df74213639dc196672a8cf86c775c9 116 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 115 2.4E-46 T 12-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 YPK_1821 c6df74213639dc196672a8cf86c775c9 116 SUPERFAMILY SSF55200 23 115 6.93E-33 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 YPK_1821 c6df74213639dc196672a8cf86c775c9 116 Gene3D G3DSA:3.30.110.10 14 116 9.9E-38 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 YPK_0249 3f487635ead1106145cce64aa8b7d947 135 SUPERFAMILY SSF82784 1 131 4.06E-42 T 12-10-2018 IPR036102 OsmC/Ohr superfamily YPK_0249 3f487635ead1106145cce64aa8b7d947 135 Pfam PF02566 OsmC-like protein 30 127 6.6E-19 T 12-10-2018 IPR003718 OsmC/Ohr family YPK_0249 3f487635ead1106145cce64aa8b7d947 135 Gene3D G3DSA:3.30.300.20 35 133 1.3E-30 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta YPK_0249 3f487635ead1106145cce64aa8b7d947 135 Gene3D G3DSA:2.20.25.10 1 34 4.4E-22 T 12-10-2018 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 Gene3D G3DSA:3.30.70.260 321 395 1.3E-49 T 12-10-2018 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 Gene3D G3DSA:3.30.70.260 315 458 1.3E-49 T 12-10-2018 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 Gene3D G3DSA:1.20.120.1320 54 146 6.2E-101 T 12-10-2018 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 16 461 9.9E-140 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 SUPERFAMILY SSF55021 308 369 7.44E-14 T 12-10-2018 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 ProSitePatterns PS00324 Aspartokinase signature. 18 26 - T 12-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 Gene3D G3DSA:3.40.1160.10 18 301 6.2E-101 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_0372 d5d71b234c757bb063a40415782db1ac 461 SUPERFAMILY SSF55021 389 460 1.72E-14 T 12-10-2018 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 15 460 2.7E-131 T 12-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 SUPERFAMILY SSF53633 16 304 7.2E-74 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_0372 d5d71b234c757bb063a40415782db1ac 461 Pfam PF00696 Amino acid kinase family 16 289 1.1E-45 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YPK_0372 d5d71b234c757bb063a40415782db1ac 461 PIRSF PIRSF000726 14 461 3.1E-150 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 YPK_1651 70e1c48b1e8e677b6667d3eab2c8fdb3 167 TIGRFAM TIGR03126 one_C_fae: formaldehyde-activating enzyme 3 156 1.8E-42 T 12-10-2018 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 YPK_1651 70e1c48b1e8e677b6667d3eab2c8fdb3 167 SUPERFAMILY SSF54211 1 164 1.59E-56 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_1651 70e1c48b1e8e677b6667d3eab2c8fdb3 167 Pfam PF08714 Formaldehyde-activating enzyme (Fae) 5 162 2.0E-55 T 12-10-2018 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 YPK_1651 70e1c48b1e8e677b6667d3eab2c8fdb3 167 Gene3D G3DSA:3.30.230.60 1 165 7.1E-57 T 12-10-2018 IPR037075 Formaldehyde-activating enzyme superfamily GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 YPK_1644 5db8b8b1fb7cefc7d294210ff6708c3e 326 Gene3D G3DSA:1.20.120.920 115 324 1.8E-64 T 12-10-2018 YPK_1644 5db8b8b1fb7cefc7d294210ff6708c3e 326 TIGRFAM TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST 13 318 1.4E-164 T 12-10-2018 IPR019857 CRISPR-associated protein Cas1, YPEST subtype GO:0004520|GO:0043571|GO:0046872 YPK_1644 5db8b8b1fb7cefc7d294210ff6708c3e 326 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 20 324 7.9E-79 T 12-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 YPK_1644 5db8b8b1fb7cefc7d294210ff6708c3e 326 Pfam PF01867 CRISPR associated protein Cas1 38 276 1.6E-9 T 12-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 YPK_1644 5db8b8b1fb7cefc7d294210ff6708c3e 326 Gene3D G3DSA:3.100.10.20 12 114 7.7E-49 T 12-10-2018 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 SUPERFAMILY SSF52374 1 313 1.23E-101 T 12-10-2018 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 SMART SM00840 341 402 1.9E-27 T 12-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 1.1E-29 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 1.1E-29 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 1.1E-29 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 1.1E-29 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 3.0E-192 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 Pfam PF09190 DALR domain 341 402 1.9E-24 T 12-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 Gene3D G3DSA:1.20.120.640 306 461 4.2E-56 T 12-10-2018 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 461 39.304 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 8.4E-142 T 12-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 Gene3D G3DSA:3.40.50.620 1 305 4.8E-134 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3152 ad19c6c73f51015b82956268855a5fb4 461 SUPERFAMILY SSF47323 316 460 5.23E-43 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_1293 cab8f99a68acec2aca27ffcdb67ded08 375 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 359 34.01 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 YPK_1293 cab8f99a68acec2aca27ffcdb67ded08 375 SUPERFAMILY SSF56014 266 332 1.6E-10 T 12-10-2018 YPK_1293 cab8f99a68acec2aca27ffcdb67ded08 375 SUPERFAMILY SSF51604 23 139 7.42E-10 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_1293 cab8f99a68acec2aca27ffcdb67ded08 375 Gene3D G3DSA:3.30.413.10 262 360 7.7E-22 T 12-10-2018 YPK_1293 cab8f99a68acec2aca27ffcdb67ded08 375 PIRSF PIRSF004640 1 364 2.5E-145 T 12-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 YPK_1293 cab8f99a68acec2aca27ffcdb67ded08 375 Pfam PF04551 GcpE protein 14 354 3.6E-129 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 YPK_1293 cab8f99a68acec2aca27ffcdb67ded08 375 Gene3D G3DSA:3.20.20.20 1 261 1.4E-103 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_1293 cab8f99a68acec2aca27ffcdb67ded08 375 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 351 7.4E-123 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 YPK_3990 51419bcb5c41b5755daf8e2c7f70028e 424 Pfam PF00890 FAD binding domain 4 404 9.8E-63 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3990 51419bcb5c41b5755daf8e2c7f70028e 424 PIRSF PIRSF000141 1 423 8.1E-176 T 12-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 YPK_3990 51419bcb5c41b5755daf8e2c7f70028e 424 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 417 3.1E-182 T 12-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 YPK_3990 51419bcb5c41b5755daf8e2c7f70028e 424 Gene3D G3DSA:3.50.50.60 1 105 1.2E-6 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3990 51419bcb5c41b5755daf8e2c7f70028e 424 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 420 52.032 T 12-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 YPK_3990 51419bcb5c41b5755daf8e2c7f70028e 424 SUPERFAMILY SSF51905 1 418 5.34E-25 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3585 18c85dbcdeb1ae887373400e09cd8827 317 Gene3D G3DSA:3.40.1010.20 98 197 2.8E-110 T 12-10-2018 YPK_3585 18c85dbcdeb1ae887373400e09cd8827 317 Gene3D G3DSA:3.40.1010.20 6 283 2.8E-110 T 12-10-2018 YPK_3585 18c85dbcdeb1ae887373400e09cd8827 317 Gene3D G3DSA:3.40.50.11270 12 97 2.8E-110 T 12-10-2018 YPK_3585 18c85dbcdeb1ae887373400e09cd8827 317 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 6.4E-97 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 YPK_3585 18c85dbcdeb1ae887373400e09cd8827 317 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 36.348 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 YPK_3585 18c85dbcdeb1ae887373400e09cd8827 317 Pfam PF02401 LytB protein 3 283 1.5E-91 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 YPK_3205 ea6f3b64c329565b5fb35d43ed0855a5 117 Pfam PF02635 DsrE/DsrF-like family 3 117 1.6E-20 T 12-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein YPK_3205 ea6f3b64c329565b5fb35d43ed0855a5 117 Gene3D G3DSA:3.40.1260.10 2 117 6.5E-31 T 12-10-2018 IPR027396 DsrEFH-like YPK_3205 ea6f3b64c329565b5fb35d43ed0855a5 117 SUPERFAMILY SSF75169 1 117 3.53E-32 T 12-10-2018 IPR027396 DsrEFH-like YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 Gene3D G3DSA:3.40.50.300 31 257 8.2E-50 T 12-10-2018 YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 Pfam PF00005 ABC transporter 304 454 1.3E-14 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 Pfam PF00005 ABC transporter 54 199 1.3E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 ProSitePatterns PS00211 ABC transporters family signature. 427 441 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 SMART SM00382 308 503 0.0027 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 SMART SM00382 61 250 2.0E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 SUPERFAMILY SSF52540 34 249 3.78E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 SUPERFAMILY SSF52540 304 516 1.23E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2767 9498e25210fbc0f6dbea1243fe081c81 524 Gene3D G3DSA:3.40.50.300 294 524 4.8E-36 T 12-10-2018 YPK_1481 707e0bcd8b64455fbf71d6c63cde807b 189 Pfam PF05638 Type VI secretion system effector, Hcp 34 164 3.3E-40 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_1481 707e0bcd8b64455fbf71d6c63cde807b 189 Gene3D G3DSA:2.30.110.20 32 189 1.3E-65 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_1481 707e0bcd8b64455fbf71d6c63cde807b 189 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 29 173 4.9E-20 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_1481 707e0bcd8b64455fbf71d6c63cde807b 189 SUPERFAMILY SSF141452 30 187 1.7E-51 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 129 9.6E-45 T 12-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 130 22.272 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 Gene3D G3DSA:1.10.1200.120 1 132 4.4E-42 T 12-10-2018 IPR036019 Gated mechanosensitive channel YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 3 17 3.5E-12 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 81 89 3.5E-12 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 90 99 3.5E-12 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 SUPERFAMILY SSF81330 9 125 3.92E-35 T 12-10-2018 IPR036019 Gated mechanosensitive channel YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 131 5.2E-54 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 YPK_0312 8ab9b7da1aca920448dc0c7cb30b1274 134 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 10 23 - T 12-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site YPK_1567 4cae8759424fe3d9adb72cf71209af88 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 7 147 27.161 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1567 4cae8759424fe3d9adb72cf71209af88 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 4.1E-52 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1567 4cae8759424fe3d9adb72cf71209af88 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1567 4cae8759424fe3d9adb72cf71209af88 180 Gene3D G3DSA:3.30.70.3270 33 176 4.9E-43 T 12-10-2018 YPK_1567 4cae8759424fe3d9adb72cf71209af88 180 SUPERFAMILY SSF54862 33 156 4.06E-29 T 12-10-2018 YPK_1567 4cae8759424fe3d9adb72cf71209af88 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 4.7E-12 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 SMART SM00421 146 203 3.7E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 SUPERFAMILY SSF52172 3 131 2.99E-31 T 12-10-2018 IPR011006 CheY-like superfamily YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 Gene3D G3DSA:3.40.50.12740 2 209 9.5E-57 T 12-10-2018 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 SMART SM00448 2 115 4.4E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 SUPERFAMILY SSF46894 136 210 3.4E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 5.1E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 Pfam PF00072 Response regulator receiver domain 4 116 3.9E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2356 e0f975ea7bbb881a38438d3b97f1d90b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 Pfam PF01330 RuvA N terminal domain 2 62 4.4E-18 T 12-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 SUPERFAMILY SSF50249 2 63 9.71E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2144 382003c113630b89e8f6fb5eba34475d 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 1.6E-17 T 12-10-2018 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 SUPERFAMILY SSF46929 159 202 5.36E-10 T 12-10-2018 IPR036267 RuvA, C-terminal domain superfamily YPK_2144 382003c113630b89e8f6fb5eba34475d 204 Gene3D G3DSA:1.10.150.20 67 142 2.7E-30 T 12-10-2018 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 Gene3D G3DSA:1.10.8.10 157 204 7.5E-23 T 12-10-2018 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 204 3.0E-67 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 SMART SM00278 108 127 0.15 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 SMART SM00278 73 92 0.054 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 SUPERFAMILY SSF47781 66 136 6.95E-23 T 12-10-2018 IPR010994 RuvA domain 2-like YPK_2144 382003c113630b89e8f6fb5eba34475d 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 32.583 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 Pfam PF07499 RuvA, C-terminal domain 161 202 9.3E-14 T 12-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 YPK_2144 382003c113630b89e8f6fb5eba34475d 204 Gene3D G3DSA:2.40.50.140 1 66 6.5E-26 T 12-10-2018 YPK_0968 70053f1db1823b2f460d5a249c0da3f4 411 SUPERFAMILY SSF53850 31 400 9.06E-80 T 12-10-2018 YPK_0968 70053f1db1823b2f460d5a249c0da3f4 411 Gene3D G3DSA:3.40.190.10 49 362 4.4E-99 T 12-10-2018 YPK_0968 70053f1db1823b2f460d5a249c0da3f4 411 PRINTS PR00181 Maltose binding protein signature 69 87 2.0E-8 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0968 70053f1db1823b2f460d5a249c0da3f4 411 PRINTS PR00181 Maltose binding protein signature 129 148 2.0E-8 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0968 70053f1db1823b2f460d5a249c0da3f4 411 PRINTS PR00181 Maltose binding protein signature 150 169 2.0E-8 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0968 70053f1db1823b2f460d5a249c0da3f4 411 PRINTS PR00181 Maltose binding protein signature 362 381 2.0E-8 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0968 70053f1db1823b2f460d5a249c0da3f4 411 Pfam PF13416 Bacterial extracellular solute-binding protein 46 348 1.2E-52 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_0968 70053f1db1823b2f460d5a249c0da3f4 411 Gene3D G3DSA:3.40.190.10 138 395 4.4E-99 T 12-10-2018 YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 Pfam PF09383 NIL domain 268 339 6.6E-18 T 12-10-2018 IPR018449 NIL domain YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 SMART SM00930 265 340 6.4E-24 T 12-10-2018 IPR018449 NIL domain YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 SUPERFAMILY SSF55021 248 343 1.26E-24 T 12-10-2018 YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 SMART SM00382 30 217 1.1E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 Pfam PF00005 ABC transporter 21 169 1.8E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 1.4E-196 T 12-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 Gene3D G3DSA:3.30.70.260 233 343 1.2E-36 T 12-10-2018 YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 SUPERFAMILY SSF52540 1 240 2.48E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1096 b820fbf1107f4c411f391068bedcbfbf 343 Gene3D G3DSA:3.40.50.300 1 232 1.6E-78 T 12-10-2018 YPK_1560 f37b80ecd176906fec926960d025c8bd 166 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 9 126 19.929 T 12-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 YPK_1560 f37b80ecd176906fec926960d025c8bd 166 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 29 125 3.0E-31 T 12-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1560 f37b80ecd176906fec926960d025c8bd 166 Gene3D G3DSA:1.20.58.1610 1 126 8.9E-43 T 12-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 SUPERFAMILY SSF46689 4 98 5.38E-27 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 Gene3D G3DSA:1.10.10.60 1 98 2.7E-35 T 12-10-2018 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 PIRSF PIRSF002097 1 98 4.3E-47 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 5.1E-34 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 5.1E-34 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 5.1E-34 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 5.1E-34 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.512 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 YPK_0452 b35aa6e9977e10a02a1243efe8e50ad3 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.8E-14 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_3556 af74e2decb98b6b1a002a5ae5f90b07b 367 Pfam PF13599 Pentapeptide repeats (9 copies) 21 85 7.0E-8 T 12-10-2018 IPR001646 Pentapeptide repeat YPK_3556 af74e2decb98b6b1a002a5ae5f90b07b 367 Pfam PF13599 Pentapeptide repeats (9 copies) 210 276 2.2E-11 T 12-10-2018 IPR001646 Pentapeptide repeat YPK_3556 af74e2decb98b6b1a002a5ae5f90b07b 367 SUPERFAMILY SSF141571 16 169 5.76E-21 T 12-10-2018 YPK_3556 af74e2decb98b6b1a002a5ae5f90b07b 367 Pfam PF00805 Pentapeptide repeats (8 copies) 291 321 0.0029 T 12-10-2018 IPR001646 Pentapeptide repeat YPK_3556 af74e2decb98b6b1a002a5ae5f90b07b 367 Gene3D G3DSA:2.160.20.100 13 175 5.7E-23 T 12-10-2018 YPK_3556 af74e2decb98b6b1a002a5ae5f90b07b 367 SUPERFAMILY SSF141571 157 325 7.26E-35 T 12-10-2018 YPK_3556 af74e2decb98b6b1a002a5ae5f90b07b 367 Gene3D G3DSA:2.160.20.100 176 330 2.5E-29 T 12-10-2018 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 Pfam PF01168 Alanine racemase, N-terminal domain 49 271 2.0E-41 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 Pfam PF00842 Alanine racemase, C-terminal domain 280 405 2.3E-33 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 Gene3D G3DSA:3.20.20.10 51 268 4.1E-126 T 12-10-2018 IPR029066 PLP-binding barrel YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 PRINTS PR00992 Alanine racemase signature 104 122 4.6E-24 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 PRINTS PR00992 Alanine racemase signature 166 178 4.6E-24 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 PRINTS PR00992 Alanine racemase signature 245 272 4.6E-24 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 PRINTS PR00992 Alanine racemase signature 68 84 4.6E-24 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 PRINTS PR00992 Alanine racemase signature 202 213 4.6E-24 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 PRINTS PR00992 Alanine racemase signature 313 328 4.6E-24 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 PRINTS PR00992 Alanine racemase signature 334 351 4.6E-24 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 SUPERFAMILY SSF51419 49 280 2.91E-41 T 12-10-2018 IPR029066 PLP-binding barrel YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 SMART SM01005 280 408 5.2E-49 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 Hamap MF_01201 Alanine racemase. 42 408 24.622 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 73 83 - T 12-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 Gene3D G3DSA:2.40.37.10 45 403 4.1E-126 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 SUPERFAMILY SSF50621 275 408 2.93E-41 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YPK_1764 812a2c7232b1be4355b6f765f774b66b 409 TIGRFAM TIGR00492 alr: alanine racemase 44 393 1.1E-63 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_0455 a4e495a6c887717aaa17175079f0043b 484 Gene3D G3DSA:1.20.1730.10 26 481 2.8E-83 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily YPK_0455 a4e495a6c887717aaa17175079f0043b 484 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 414 434 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site YPK_0455 a4e495a6c887717aaa17175079f0043b 484 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 432 4.0E-107 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YPK_0455 a4e495a6c887717aaa17175079f0043b 484 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 472 7.6E-242 T 12-10-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0036376 YPK_0455 a4e495a6c887717aaa17175079f0043b 484 Pfam PF00474 Sodium:solute symporter family 36 432 6.9E-131 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YPK_0455 a4e495a6c887717aaa17175079f0043b 484 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 8 757 1.7E-101 T 12-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 Pfam PF12008 Type I restriction and modification enzyme - subunit R C terminal 764 1050 1.3E-34 T 12-10-2018 IPR022625 Type-1 restriction enzyme R protein, C-terminal YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 Gene3D G3DSA:3.40.50.300 472 767 2.2E-54 T 12-10-2018 YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 SMART SM00487 260 474 1.4E-11 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 Gene3D G3DSA:3.90.640.50 32 115 3.2E-46 T 12-10-2018 YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 Pfam PF04851 Type III restriction enzyme, res subunit 263 449 5.1E-27 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 Gene3D G3DSA:3.40.50.300 263 471 2.9E-60 T 12-10-2018 YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 6 206 3.7E-19 T 12-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 SUPERFAMILY SSF52540 300 764 6.59E-5 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 SUPERFAMILY SSF52540 212 455 2.33E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3674 c34588ee49ae9e3beca0b1a4e50eea77 1075 Gene3D G3DSA:3.90.1570.50 5 254 3.2E-46 T 12-10-2018 YPK_0813 ecad5f6b165c10625091596284a576f5 499 Pfam PF00005 ABC transporter 269 424 3.1E-19 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0813 ecad5f6b165c10625091596284a576f5 499 SUPERFAMILY SSF52540 4 230 5.44E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0813 ecad5f6b165c10625091596284a576f5 499 Gene3D G3DSA:3.40.50.300 250 496 2.0E-44 T 12-10-2018 YPK_0813 ecad5f6b165c10625091596284a576f5 499 Gene3D G3DSA:3.40.50.300 2 249 7.4E-54 T 12-10-2018 YPK_0813 ecad5f6b165c10625091596284a576f5 499 Pfam PF00005 ABC transporter 21 170 2.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0813 ecad5f6b165c10625091596284a576f5 499 SUPERFAMILY SSF52540 255 486 4.69E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0813 ecad5f6b165c10625091596284a576f5 499 SMART SM00382 30 218 9.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0813 ecad5f6b165c10625091596284a576f5 499 SMART SM00382 278 473 0.01 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0813 ecad5f6b165c10625091596284a576f5 499 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0649 e508b5f5a872c6c13e818d4ac67eda8a 217 SUPERFAMILY SSF55821 7 210 1.01E-84 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPK_0649 e508b5f5a872c6c13e818d4ac67eda8a 217 Gene3D G3DSA:3.90.870.10 1 217 1.3E-96 T 12-10-2018 YPK_0649 e508b5f5a872c6c13e818d4ac67eda8a 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 2.5E-82 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_0649 e508b5f5a872c6c13e818d4ac67eda8a 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 41.897 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_0649 e508b5f5a872c6c13e818d4ac67eda8a 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 208 1.8E-79 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_3700 dbe1f33480f96e306ec625ce3d302b3e 378 SUPERFAMILY SSF51338 2 377 9.5E-8 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_3700 dbe1f33480f96e306ec625ce3d302b3e 378 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 2 378 1.2E-151 T 12-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_3700 dbe1f33480f96e306ec625ce3d302b3e 378 SUPERFAMILY SSF51556 50 345 5.59E-20 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_3700 dbe1f33480f96e306ec625ce3d302b3e 378 PIRSF PIRSF038971 1 378 1.7E-153 T 12-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_3700 dbe1f33480f96e306ec625ce3d302b3e 378 Pfam PF07969 Amidohydrolase family 214 366 3.5E-11 T 12-10-2018 IPR013108 Amidohydrolase 3 YPK_3700 dbe1f33480f96e306ec625ce3d302b3e 378 Gene3D G3DSA:3.20.20.140 308 340 5.5E-8 T 12-10-2018 YPK_3700 dbe1f33480f96e306ec625ce3d302b3e 378 Gene3D G3DSA:2.30.40.10 341 376 5.5E-8 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_3700 dbe1f33480f96e306ec625ce3d302b3e 378 Gene3D G3DSA:3.20.20.140 1 248 7.1E-6 T 12-10-2018 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 246 306 1.2E-19 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 Gene3D G3DSA:3.30.460.10 51 216 4.8E-66 T 12-10-2018 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 SUPERFAMILY SSF81301 56 215 1.06E-40 T 12-10-2018 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 Gene3D G3DSA:1.10.3090.10 217 468 1.1E-103 T 12-10-2018 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 SUPERFAMILY SSF81891 217 455 1.96E-50 T 12-10-2018 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 29 482 38.635 T 12-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 Pfam PF01743 Poly A polymerase head domain 85 219 1.2E-39 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 54 483 1.7E-160 T 12-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 YPK_3470 5077097bb80b8a90c65c1f8c12a61295 491 Pfam PF12626 Polymerase A arginine-rich C-terminus 364 483 5.7E-44 T 12-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain YPK_3428 d3f3783745daf252971ea24e18cca44e 254 Gene3D G3DSA:3.40.1210.10 1 254 1.8E-104 T 12-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 YPK_3428 d3f3783745daf252971ea24e18cca44e 254 SUPERFAMILY SSF64167 2 249 5.62E-82 T 12-10-2018 YPK_3428 d3f3783745daf252971ea24e18cca44e 254 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 3 233 1.3E-75 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 YPK_3428 d3f3783745daf252971ea24e18cca44e 254 Pfam PF01975 Survival protein SurE 4 182 3.2E-57 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 YPK_3428 d3f3783745daf252971ea24e18cca44e 254 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 2 250 39.745 T 12-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 Gene3D G3DSA:3.30.300.130 101 188 8.3E-21 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 98 1.3E-12 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 1.4E-100 T 12-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 SUPERFAMILY SSF89360 1 97 1.73E-21 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 SUPERFAMILY SSF117916 95 184 1.26E-23 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 46.185 T 12-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 Gene3D G3DSA:2.60.300.12 1 98 1.3E-13 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 6.0E-28 T 12-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 YPK_0163 6293ac96e9168f548dbd8f9f9e649b86 191 Pfam PF01106 NifU-like domain 111 177 7.7E-20 T 12-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 YPK_1898 8114143ce0a0b4ef1b814e2d4136edae 465 Pfam PF04317 YcjX-like family, DUF463 20 464 4.9E-188 T 12-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein YPK_1898 8114143ce0a0b4ef1b814e2d4136edae 465 PIRSF PIRSF019381 1 465 2.7E-219 T 12-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein YPK_0449 b960ea3e2cb68a3bd4b43b8481447e32 454 Gene3D G3DSA:1.20.1250.20 27 453 4.6E-47 T 12-10-2018 YPK_0449 b960ea3e2cb68a3bd4b43b8481447e32 454 Pfam PF07690 Major Facilitator Superfamily 31 399 1.7E-23 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0449 b960ea3e2cb68a3bd4b43b8481447e32 454 SUPERFAMILY SSF103473 23 435 2.75E-51 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0449 b960ea3e2cb68a3bd4b43b8481447e32 454 ProSitePatterns PS00217 Sugar transport proteins signature 2. 137 162 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 Gene3D G3DSA:1.10.10.10 2 84 7.5E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 Gene3D G3DSA:3.40.190.290 96 268 9.0E-21 T 12-10-2018 YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 SUPERFAMILY SSF46785 6 84 2.43E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 SUPERFAMILY SSF53850 95 288 7.06E-28 T 12-10-2018 YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 Pfam PF03466 LysR substrate binding domain 91 286 2.4E-26 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_1442 6b0aa26b38cd0616c3568d500ab352be 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 4.6E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2421 b72933f93900dd8d5044d8c3fb2d0710 251 SUPERFAMILY SSF117143 77 209 7.72E-19 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like YPK_2421 b72933f93900dd8d5044d8c3fb2d0710 251 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 6.9E-34 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G YPK_2421 b72933f93900dd8d5044d8c3fb2d0710 251 Pfam PF00460 Flagella basal body rod protein 5 35 5.1E-8 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_2421 b72933f93900dd8d5044d8c3fb2d0710 251 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 171 247 6.2E-22 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_1593 aa8d6c6edcb758802650bedcf7b2a875 471 Pfam PF00501 AMP-binding enzyme 16 365 5.2E-50 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_1593 aa8d6c6edcb758802650bedcf7b2a875 471 Gene3D G3DSA:3.30.300.30 366 464 4.4E-13 T 12-10-2018 YPK_1593 aa8d6c6edcb758802650bedcf7b2a875 471 ProSitePatterns PS00455 Putative AMP-binding domain signature. 148 159 - T 12-10-2018 IPR020845 AMP-binding, conserved site YPK_1593 aa8d6c6edcb758802650bedcf7b2a875 471 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 35 455 1.5E-116 T 12-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 YPK_1593 aa8d6c6edcb758802650bedcf7b2a875 471 SUPERFAMILY SSF56801 11 462 7.72E-91 T 12-10-2018 YPK_1593 aa8d6c6edcb758802650bedcf7b2a875 471 Gene3D G3DSA:3.40.50.12780 13 364 1.2E-64 T 12-10-2018 YPK_0294 befa1f16cd3678b4fd32cb80030666d8 104 SMART SM00739 4 31 9.8E-4 T 12-10-2018 IPR005824 KOW YPK_0294 befa1f16cd3678b4fd32cb80030666d8 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.948 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0294 befa1f16cd3678b4fd32cb80030666d8 104 Pfam PF00467 KOW motif 8 37 7.7E-5 T 12-10-2018 IPR005824 KOW YPK_0294 befa1f16cd3678b4fd32cb80030666d8 104 SUPERFAMILY SSF50104 4 101 5.54E-33 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily YPK_0294 befa1f16cd3678b4fd32cb80030666d8 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 2.3E-39 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0294 befa1f16cd3678b4fd32cb80030666d8 104 Gene3D G3DSA:2.30.30.30 2 104 1.9E-40 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 YPK_0294 befa1f16cd3678b4fd32cb80030666d8 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 12-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0294 befa1f16cd3678b4fd32cb80030666d8 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 3.7E-23 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1142 62b0053046094cc4a15e79586c3cc54d 134 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 3.4E-19 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YPK_1142 62b0053046094cc4a15e79586c3cc54d 134 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 17.344 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YPK_3821 505dbb43c7280d0891cf0e1a7ec3b6dc 132 Pfam PF13698 Domain of unknown function (DUF4156) 41 131 5.4E-32 T 12-10-2018 IPR025294 Protein of unknown function DUF4156 YPK_2904 0c8f8f490262d2f63208cbc2fdc5479e 108 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 7 107 7.7E-33 T 12-10-2018 IPR009799 EthD domain YPK_2904 0c8f8f490262d2f63208cbc2fdc5479e 108 SUPERFAMILY SSF54909 7 104 6.67E-29 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_2904 0c8f8f490262d2f63208cbc2fdc5479e 108 Gene3D G3DSA:3.30.70.100 6 103 1.7E-28 T 12-10-2018 YPK_2904 0c8f8f490262d2f63208cbc2fdc5479e 108 Pfam PF07110 EthD domain 18 95 5.6E-16 T 12-10-2018 IPR009799 EthD domain YPK_4051 4fdfa4019742c322442f061acef11d27 492 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 486 39.412 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YPK_4051 4fdfa4019742c322442f061acef11d27 492 Gene3D G3DSA:1.10.1040.10 209 492 3.7E-126 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_4051 4fdfa4019742c322442f061acef11d27 492 SUPERFAMILY SSF51735 30 209 4.59E-58 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_4051 4fdfa4019742c322442f061acef11d27 492 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 368 4.6E-135 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YPK_4051 4fdfa4019742c322442f061acef11d27 492 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 7.7E-26 T 12-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YPK_4051 4fdfa4019742c322442f061acef11d27 492 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 355 483 1.2E-21 T 12-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YPK_4051 4fdfa4019742c322442f061acef11d27 492 SUPERFAMILY SSF48179 210 343 2.04E-39 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_4051 4fdfa4019742c322442f061acef11d27 492 SUPERFAMILY SSF48179 348 485 2.72E-41 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_4051 4fdfa4019742c322442f061acef11d27 492 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 4.2E-59 T 12-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 YPK_4051 4fdfa4019742c322442f061acef11d27 492 Gene3D G3DSA:3.40.50.720 1 208 9.3E-87 T 12-10-2018 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 82 160 4.4E-11 T 12-10-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 SMART SM00304 184 237 6.1E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 Gene3D G3DSA:1.10.287.130 188 302 3.0E-37 T 12-10-2018 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 453 6.2E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 298 1.3E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 SMART SM00388 238 300 1.7E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 Pfam PF00672 HAMP domain 184 233 1.2E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 SUPERFAMILY SSF47384 224 299 2.16E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 Gene3D G3DSA:3.30.450.210 27 147 5.1E-11 T 12-10-2018 IPR038515 CpxA, periplasmic domain superfamily YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.8E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 1.8E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 1.8E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 Gene3D G3DSA:3.30.565.10 304 454 2.6E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 SUPERFAMILY SSF55874 289 455 3.93E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_4133 6d034cbcfcae5f81fd7fb165ab660657 458 SMART SM00387 345 455 1.6E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 5.1E-42 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 2.9E-92 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 Gene3D G3DSA:3.30.572.10 1 264 1.1E-134 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 Pfam PF00303 Thymidylate synthase 2 264 3.8E-126 T 12-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 12-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 39.766 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 SUPERFAMILY SSF55831 1 264 6.67E-130 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 1.7E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 1.7E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 1.7E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 1.7E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_1036 b15a4ac589d76bf4f503db2a564bc391 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.7E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 YPK_2694 147e3fca95c482f620fabf69995d72dd 87 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 6.2E-41 T 12-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 YPK_2694 147e3fca95c482f620fabf69995d72dd 87 Gene3D G3DSA:2.40.50.140 2 65 3.0E-26 T 12-10-2018 YPK_2694 147e3fca95c482f620fabf69995d72dd 87 PRINTS PR00050 Cold shock protein signature 25 34 1.0E-15 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2694 147e3fca95c482f620fabf69995d72dd 87 PRINTS PR00050 Cold shock protein signature 4 19 1.0E-15 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2694 147e3fca95c482f620fabf69995d72dd 87 PRINTS PR00050 Cold shock protein signature 40 58 1.0E-15 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2694 147e3fca95c482f620fabf69995d72dd 87 SMART SM00357 3 67 2.1E-28 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_2694 147e3fca95c482f620fabf69995d72dd 87 SUPERFAMILY SSF50249 1 66 1.2E-22 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2694 147e3fca95c482f620fabf69995d72dd 87 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 12-10-2018 IPR019844 Cold-shock conserved site YPK_2694 147e3fca95c482f620fabf69995d72dd 87 Pfam PF00313 'Cold-shock' DNA-binding domain 3 64 9.5E-28 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2694 147e3fca95c482f620fabf69995d72dd 87 PIRSF PIRSF002599 1 78 4.1E-22 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_3937 a99a1f80747a68f1636c9cddf9dc55d2 161 Pfam PF02357 Transcription termination factor nusG 2 95 1.6E-17 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YPK_3937 a99a1f80747a68f1636c9cddf9dc55d2 161 SMART SM00739 109 136 4.4E-4 T 12-10-2018 IPR005824 KOW YPK_3937 a99a1f80747a68f1636c9cddf9dc55d2 161 Gene3D G3DSA:3.30.70.940 1 161 5.8E-55 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YPK_3937 a99a1f80747a68f1636c9cddf9dc55d2 161 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 158 46.723 T 12-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 YPK_3937 a99a1f80747a68f1636c9cddf9dc55d2 161 SMART SM00738 1 100 7.7E-32 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YPK_3937 a99a1f80747a68f1636c9cddf9dc55d2 161 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 2.3E-58 T 12-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 YPK_3937 a99a1f80747a68f1636c9cddf9dc55d2 161 SUPERFAMILY SSF82679 1 98 2.22E-26 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 SUPERFAMILY SSF56317 4 242 6.15E-60 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 SUPERFAMILY SSF52402 251 520 1.01E-77 T 12-10-2018 YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 Pfam PF02540 NAD synthase 264 511 1.6E-71 T 12-10-2018 IPR022310 NAD/GMP synthase YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 TIGRFAM TIGR00552 nadE: NAD+ synthetase 265 511 4.7E-59 T 12-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 Gene3D G3DSA:3.40.50.620 261 539 3.2E-113 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 PIRSF PIRSF006630 243 539 2.2E-120 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 PIRSF PIRSF006630 2 247 1.8E-80 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 Pfam PF00795 Carbon-nitrogen hydrolase 7 241 2.8E-25 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 5 537 28.247 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 37 52 - T 12-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 YPK_1261 6a0cdad2a846b14d1d6a2fb05648da4b 540 Gene3D G3DSA:3.60.110.10 1 255 3.2E-86 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_1866 946e7670d043a1772f20ab79633cbb56 116 Gene3D G3DSA:3.40.30.10 1 107 2.5E-33 T 12-10-2018 YPK_1866 946e7670d043a1772f20ab79633cbb56 116 SUPERFAMILY SSF52833 2 101 1.15E-35 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_1866 946e7670d043a1772f20ab79633cbb56 116 PIRSF PIRSF005894 1 107 5.8E-52 T 12-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 YPK_1866 946e7670d043a1772f20ab79633cbb56 116 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 3.8E-47 T 12-10-2018 IPR004480 Monothiol glutaredoxin-related YPK_1866 946e7670d043a1772f20ab79633cbb56 116 Pfam PF00462 Glutaredoxin 16 80 9.3E-19 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YPK_1673 e216beddb440e18e22a50cb8662f847c 84 Pfam PF13991 BssS protein family 11 81 2.7E-38 T 12-10-2018 IPR025730 Biofilm regulator BssS YPK_1673 e216beddb440e18e22a50cb8662f847c 84 ProDom PD060858 YCEP CYTOPLASMIC STY1199 ESCHERICHIA COLI SIMILAR ECS1438 1 84 2.0E-43 T 12-10-2018 IPR025730 Biofilm regulator BssS YPK_3471 e024b149bb26f3771bcf266800ee09e6 159 Gene3D G3DSA:3.30.70.560 1 159 2.7E-63 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YPK_3471 e024b149bb26f3771bcf266800ee09e6 159 SUPERFAMILY SSF55083 1 158 6.54E-55 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YPK_3471 e024b149bb26f3771bcf266800ee09e6 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 2.4E-46 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YPK_3471 e024b149bb26f3771bcf266800ee09e6 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YPK_3471 e024b149bb26f3771bcf266800ee09e6 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 1.2E-36 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 YPK_0437 aaeaba041619fa66ba25f74dbe69d79a 284 Pfam PF02798 Glutathione S-transferase, N-terminal domain 45 127 4.5E-9 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YPK_0437 aaeaba041619fa66ba25f74dbe69d79a 284 Pfam PF13410 Glutathione S-transferase, C-terminal domain 175 244 5.6E-10 T 12-10-2018 YPK_0437 aaeaba041619fa66ba25f74dbe69d79a 284 Gene3D G3DSA:1.20.1050.10 134 250 1.5E-111 T 12-10-2018 YPK_0437 aaeaba041619fa66ba25f74dbe69d79a 284 SUPERFAMILY SSF47616 118 260 3.68E-34 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPK_0437 aaeaba041619fa66ba25f74dbe69d79a 284 Gene3D G3DSA:3.40.30.10 20 256 1.5E-111 T 12-10-2018 YPK_0437 aaeaba041619fa66ba25f74dbe69d79a 284 SUPERFAMILY SSF52833 40 132 4.68E-18 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 SMART SM00228 115 186 0.18 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 SMART SM00228 211 280 5.1E-9 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 Gene3D G3DSA:2.30.42.10 126 220 9.1E-34 T 12-10-2018 YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 Gene3D G3DSA:2.30.42.10 221 310 2.2E-20 T 12-10-2018 YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 SUPERFAMILY SSF50156 86 186 1.25E-11 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 Pfam PF02163 Peptidase family M50 10 439 4.9E-88 T 12-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 451 5.7E-160 T 12-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 SUPERFAMILY SSF50156 195 290 2.5E-16 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 YPK_1073 51bce49ee2f68b63f908a0b2d474290a 451 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 223 272 3.9E-8 T 12-10-2018 IPR001478 PDZ domain GO:0005515 YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 Gene3D G3DSA:2.40.50.140 1 67 8.1E-32 T 12-10-2018 YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 PIRSF PIRSF002599 1 69 7.1E-26 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 SUPERFAMILY SSF50249 3 68 9.14E-26 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 PRINTS PR00050 Cold shock protein signature 27 36 1.4E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 PRINTS PR00050 Cold shock protein signature 6 21 1.4E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 PRINTS PR00050 Cold shock protein signature 42 60 1.4E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 12-10-2018 IPR019844 Cold-shock conserved site YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 SMART SM00357 5 69 6.9E-33 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_3031 95aceaef7fdfd0da6b65a2a8a1a6ebbd 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 2.6E-33 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_1274 82e384392b4c8ef7ecdce8ba97985e4f 257 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 240 2.3E-87 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 YPK_1274 82e384392b4c8ef7ecdce8ba97985e4f 257 SUPERFAMILY SSF75217 3 170 5.95E-39 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases YPK_1274 82e384392b4c8ef7ecdce8ba97985e4f 257 PIRSF PIRSF004808 1 246 3.3E-77 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 YPK_1274 82e384392b4c8ef7ecdce8ba97985e4f 257 Gene3D G3DSA:3.40.1280.10 1 164 4.5E-66 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_1274 82e384392b4c8ef7ecdce8ba97985e4f 257 Gene3D G3DSA:1.10.8.590 167 251 6.8E-33 T 12-10-2018 YPK_1274 82e384392b4c8ef7ecdce8ba97985e4f 257 Pfam PF00588 SpoU rRNA Methylase family 5 154 3.0E-34 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YPK_0424 534420f983cc65d331677142935d2b99 271 Gene3D G3DSA:3.40.50.300 5 216 2.3E-60 T 12-10-2018 YPK_0424 534420f983cc65d331677142935d2b99 271 SMART SM00382 37 211 2.6E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0424 534420f983cc65d331677142935d2b99 271 Pfam PF00005 ABC transporter 28 161 1.5E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0424 534420f983cc65d331677142935d2b99 271 SUPERFAMILY SSF52540 13 213 7.55E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0424 534420f983cc65d331677142935d2b99 271 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 Pfam PF00106 short chain dehydrogenase 14 210 1.8E-51 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 SUPERFAMILY SSF51735 10 243 5.22E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 199 8.2E-4 T 12-10-2018 YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 Gene3D G3DSA:3.40.50.720 1 250 1.6E-73 T 12-10-2018 YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 3.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 3.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 3.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 3.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 3.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2037 acd33933113a73fe4fb89d43bba94b1a 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 Gene3D G3DSA:3.40.50.1700 347 595 1.4E-80 T 12-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 Gene3D G3DSA:2.60.40.10 602 717 3.8E-35 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3072 3fe481797d09b978d4efc239e764b0da 793 Gene3D G3DSA:3.20.20.300 29 337 5.4E-110 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 Pfam PF14310 Fibronectin type III-like domain 632 702 9.2E-27 T 12-10-2018 IPR026891 Fibronectin type III-like domain YPK_3072 3fe481797d09b978d4efc239e764b0da 793 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 249 266 - T 12-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 70 86 2.6E-34 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 102 121 2.6E-34 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 179 195 2.6E-34 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 249 267 2.6E-34 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 PRINTS PR00133 Glycosyl hydrolase family 3 signature 148 164 2.6E-34 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 SUPERFAMILY SSF52279 361 595 7.72E-48 T 12-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 SMART SM01217 632 702 5.1E-34 T 12-10-2018 IPR026891 Fibronectin type III-like domain YPK_3072 3fe481797d09b978d4efc239e764b0da 793 SUPERFAMILY SSF51445 19 360 1.58E-88 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_3072 3fe481797d09b978d4efc239e764b0da 793 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 70 328 9.8E-52 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_3072 3fe481797d09b978d4efc239e764b0da 793 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 361 593 3.6E-50 T 12-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 YPK_2297 84007aa06172a01e33d8935034c089ea 99 Gene3D G3DSA:3.10.450.40 6 95 4.0E-18 T 12-10-2018 YPK_2297 84007aa06172a01e33d8935034c089ea 99 SUPERFAMILY SSF160719 16 81 6.8E-25 T 12-10-2018 YPK_2297 84007aa06172a01e33d8935034c089ea 99 Pfam PF04965 Gene 25-like lysozyme 20 81 1.0E-13 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 SUPERFAMILY SSF52283 1 168 1.11E-58 T 12-10-2018 YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 1.3E-75 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 PIRSF PIRSF000203 1 507 3.6E-279 T 12-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 12-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 SMART SM01003 4 137 5.7E-77 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 425 507 1.0E-35 T 12-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 Gene3D G3DSA:3.40.50.720 137 318 3.3E-164 T 12-10-2018 YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 SMART SM01002 146 311 9.8E-86 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 SUPERFAMILY SSF51735 137 317 1.13E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 508 2.6E-292 T 12-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 1.1E-52 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 12-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 YPK_1941 af0ad0983d31cce038f1645b1d8c542d 508 Gene3D G3DSA:3.40.50.720 3 365 3.3E-164 T 12-10-2018 YPK_1022 57d9061cc481929422c9cf91c7e35c75 386 Gene3D G3DSA:1.20.1250.20 198 380 1.0E-13 T 12-10-2018 YPK_1022 57d9061cc481929422c9cf91c7e35c75 386 Gene3D G3DSA:1.20.1250.20 3 197 4.6E-34 T 12-10-2018 YPK_1022 57d9061cc481929422c9cf91c7e35c75 386 SUPERFAMILY SSF103473 3 378 4.05E-57 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1022 57d9061cc481929422c9cf91c7e35c75 386 Pfam PF07690 Major Facilitator Superfamily 8 313 1.5E-40 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3543 23da4eac30e876d7647e4845f2261a7f 535 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 525 1.5E-240 T 12-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 YPK_3543 23da4eac30e876d7647e4845f2261a7f 535 SUPERFAMILY SSF161098 286 528 1.83E-30 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3543 23da4eac30e876d7647e4845f2261a7f 535 Gene3D G3DSA:1.10.3720.10 291 534 1.1E-25 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3543 23da4eac30e876d7647e4845f2261a7f 535 Gene3D G3DSA:1.10.3720.10 9 268 6.2E-44 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3543 23da4eac30e876d7647e4845f2261a7f 535 SUPERFAMILY SSF161098 10 264 3.01E-45 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3543 23da4eac30e876d7647e4845f2261a7f 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 261 6.2E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3543 23da4eac30e876d7647e4845f2261a7f 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 371 525 7.1E-9 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3775 1b8c9bfe3eaba25e7eae05a4b86a9da3 246 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site YPK_3775 1b8c9bfe3eaba25e7eae05a4b86a9da3 246 SUPERFAMILY SSF56655 2 242 4.06E-73 T 12-10-2018 YPK_3775 1b8c9bfe3eaba25e7eae05a4b86a9da3 246 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 204 218 - T 12-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 YPK_3775 1b8c9bfe3eaba25e7eae05a4b86a9da3 246 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 1 246 40.924 T 12-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 YPK_3775 1b8c9bfe3eaba25e7eae05a4b86a9da3 246 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 1 244 1.2E-102 T 12-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 YPK_3775 1b8c9bfe3eaba25e7eae05a4b86a9da3 246 Gene3D G3DSA:3.30.540.10 1 146 2.8E-44 T 12-10-2018 YPK_3775 1b8c9bfe3eaba25e7eae05a4b86a9da3 246 Gene3D G3DSA:3.40.190.80 147 245 5.9E-33 T 12-10-2018 YPK_3775 1b8c9bfe3eaba25e7eae05a4b86a9da3 246 Pfam PF00459 Inositol monophosphatase family 7 231 5.1E-48 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YPK_2097 8c5f7dd02b52866b1314e6e53d553ff7 291 Pfam PF01263 Aldose 1-epimerase 28 275 3.8E-45 T 12-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 YPK_2097 8c5f7dd02b52866b1314e6e53d553ff7 291 SUPERFAMILY SSF74650 8 285 1.65E-71 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YPK_2097 8c5f7dd02b52866b1314e6e53d553ff7 291 Gene3D G3DSA:2.70.98.10 1 289 4.0E-94 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 YPK_2097 8c5f7dd02b52866b1314e6e53d553ff7 291 PIRSF PIRSF016020 8 291 2.4E-55 T 12-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 YPK_2152 bc10569a586a281e56230ddc7292a810 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 54.288 T 12-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 YPK_2152 bc10569a586a281e56230ddc7292a810 323 Gene3D G3DSA:3.40.50.150 95 323 1.8E-21 T 12-10-2018 YPK_2152 bc10569a586a281e56230ddc7292a810 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 8 321 2.9E-146 T 12-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 YPK_2152 bc10569a586a281e56230ddc7292a810 323 SUPERFAMILY SSF53335 91 323 4.89E-33 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2152 bc10569a586a281e56230ddc7292a810 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 4.8E-165 T 12-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like YPK_1661 706762f5c3b4db7483ea7faab1f63ebf 528 SUPERFAMILY SSF81296 414 527 8.96E-33 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_1661 706762f5c3b4db7483ea7faab1f63ebf 528 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 40 524 4.4E-198 T 12-10-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 YPK_1661 706762f5c3b4db7483ea7faab1f63ebf 528 Gene3D G3DSA:2.60.40.10 415 528 1.4E-49 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1661 706762f5c3b4db7483ea7faab1f63ebf 528 PIRSF PIRSF006281 2 528 1.4E-243 T 12-10-2018 IPR014438 Glucan biosynthesis protein MdoG/MdoD YPK_1661 706762f5c3b4db7483ea7faab1f63ebf 528 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 23 526 61.935 T 12-10-2018 IPR023704 Glucan biosynthesis protein G YPK_1661 706762f5c3b4db7483ea7faab1f63ebf 528 Gene3D G3DSA:2.70.98.10 39 414 2.8E-170 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 YPK_1661 706762f5c3b4db7483ea7faab1f63ebf 528 SUPERFAMILY SSF74650 40 411 1.51E-165 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YPK_2463 9777c5404470ab0a0c1d8f65cc3478af 514 SUPERFAMILY SSF54631 285 419 3.79E-24 T 12-10-2018 YPK_2463 9777c5404470ab0a0c1d8f65cc3478af 514 Pfam PF00571 CBS domain 365 416 1.4E-5 T 12-10-2018 IPR000644 CBS domain YPK_2463 9777c5404470ab0a0c1d8f65cc3478af 514 SUPERFAMILY SSF56176 430 512 1.04E-17 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_2463 9777c5404470ab0a0c1d8f65cc3478af 514 Pfam PF03471 Transporter associated domain 431 508 4.8E-17 T 12-10-2018 IPR005170 Transporter-associated domain YPK_2463 9777c5404470ab0a0c1d8f65cc3478af 514 Gene3D G3DSA:3.10.580.10 278 433 2.7E-44 T 12-10-2018 YPK_2463 9777c5404470ab0a0c1d8f65cc3478af 514 Pfam PF03741 Integral membrane protein TerC family 14 203 1.0E-48 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 YPK_2463 9777c5404470ab0a0c1d8f65cc3478af 514 SMART SM01091 428 509 6.0E-21 T 12-10-2018 IPR005170 Transporter-associated domain YPK_2463 9777c5404470ab0a0c1d8f65cc3478af 514 Gene3D G3DSA:3.30.465.10 434 509 1.8E-16 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_3422 f8679aaa2f186bc66bff1f913ef3e3ba 151 Gene3D G3DSA:3.40.1400.10 1 149 3.8E-52 T 12-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YPK_3422 f8679aaa2f186bc66bff1f913ef3e3ba 151 PIRSF PIRSF005384 2 148 2.6E-53 T 12-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YPK_3422 f8679aaa2f186bc66bff1f913ef3e3ba 151 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 4 147 2.0E-47 T 12-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YPK_3422 f8679aaa2f186bc66bff1f913ef3e3ba 151 Pfam PF02502 Ribose/Galactose Isomerase 4 142 5.7E-51 T 12-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YPK_3422 f8679aaa2f186bc66bff1f913ef3e3ba 151 SUPERFAMILY SSF89623 2 146 3.01E-52 T 12-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YPK_3422 f8679aaa2f186bc66bff1f913ef3e3ba 151 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 4 143 4.9E-45 T 12-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 YPK_0388 328851187847c7673e82c6aca08887de 146 SUPERFAMILY SSF160719 30 137 5.23E-17 T 12-10-2018 YPK_0388 328851187847c7673e82c6aca08887de 146 Gene3D G3DSA:3.10.450.40 23 139 7.7E-7 T 12-10-2018 YPK_0388 328851187847c7673e82c6aca08887de 146 Pfam PF04965 Gene 25-like lysozyme 34 120 1.6E-17 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_0388 328851187847c7673e82c6aca08887de 146 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 13 141 2.6E-38 T 12-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein YPK_0466 98824e785c47f5a7d2c241aae8d17aaf 331 Gene3D G3DSA:2.40.10.340 122 266 3.9E-35 T 12-10-2018 YPK_0466 98824e785c47f5a7d2c241aae8d17aaf 331 Pfam PF04085 rod shape-determining protein MreC 123 269 1.3E-37 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 YPK_0466 98824e785c47f5a7d2c241aae8d17aaf 331 PIRSF PIRSF038471 2 284 2.9E-74 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 YPK_0466 98824e785c47f5a7d2c241aae8d17aaf 331 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 276 1.2E-113 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 YPK_0466 98824e785c47f5a7d2c241aae8d17aaf 331 Gene3D G3DSA:2.40.10.350 180 257 3.9E-35 T 12-10-2018 YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 Gene3D G3DSA:3.40.1350.30 56 211 5.7E-75 T 12-10-2018 YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 12-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 206 372 4.0E-18 T 12-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 SUPERFAMILY SSF53335 3 372 1.1E-54 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 375 80.975 T 12-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 307 338 - T 12-10-2018 IPR030390 RNA methyltransferase TrmA, active site YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 373 2.4E-219 T 12-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 3 367 7.4E-57 T 12-10-2018 YPK_2725 43f34a356c0b0956c32a6b89c9e0d347 376 Gene3D G3DSA:3.40.50.150 14 368 5.7E-75 T 12-10-2018 YPK_4247 11ec5eaa65795bc6cc9ebd1c1e4c4d68 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 22 75 7.0E-26 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor YPK_4247 11ec5eaa65795bc6cc9ebd1c1e4c4d68 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 24.514 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor YPK_4247 11ec5eaa65795bc6cc9ebd1c1e4c4d68 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 82 1.5E-32 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor YPK_4247 11ec5eaa65795bc6cc9ebd1c1e4c4d68 85 Pfam PF01809 Haemolytic domain 10 75 1.2E-29 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor YPK_4247 11ec5eaa65795bc6cc9ebd1c1e4c4d68 85 SMART SM01234 8 75 1.7E-43 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor YPK_3228 7fcfa21ca326bf82df3ba3448281cc8d 135 SUPERFAMILY SSF54637 2 129 3.37E-36 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_3228 7fcfa21ca326bf82df3ba3448281cc8d 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 118 2.0E-28 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 YPK_3228 7fcfa21ca326bf82df3ba3448281cc8d 135 PIRSF PIRSF003230 1 134 8.7E-21 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 YPK_3228 7fcfa21ca326bf82df3ba3448281cc8d 135 Gene3D G3DSA:3.10.129.10 1 133 1.5E-34 T 12-10-2018 YPK_3228 7fcfa21ca326bf82df3ba3448281cc8d 135 Pfam PF13279 Thioesterase-like superfamily 12 125 5.7E-16 T 12-10-2018 YPK_3994 56eb2b984b18f7f7180016db0bb4cf55 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 260 1.3E-62 T 12-10-2018 IPR000150 Cof family GO:0016787 YPK_3994 56eb2b984b18f7f7180016db0bb4cf55 269 Gene3D G3DSA:3.30.1240.10 82 186 8.2E-81 T 12-10-2018 YPK_3994 56eb2b984b18f7f7180016db0bb4cf55 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 12-10-2018 YPK_3994 56eb2b984b18f7f7180016db0bb4cf55 269 SUPERFAMILY SSF56784 1 265 7.02E-69 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3994 56eb2b984b18f7f7180016db0bb4cf55 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 1.3E-26 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 YPK_3994 56eb2b984b18f7f7180016db0bb4cf55 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 260 2.9E-61 T 12-10-2018 YPK_3994 56eb2b984b18f7f7180016db0bb4cf55 269 Gene3D G3DSA:3.40.50.1000 5 256 8.2E-81 T 12-10-2018 IPR023214 HAD superfamily YPK_1060 07ed166dbc220093cd47280be381b8ae 257 Pfam PF00849 RNA pseudouridylate synthase 10 170 1.2E-32 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1060 07ed166dbc220093cd47280be381b8ae 257 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1060 07ed166dbc220093cd47280be381b8ae 257 Gene3D G3DSA:3.30.2350.10 3 235 3.0E-61 T 12-10-2018 YPK_1060 07ed166dbc220093cd47280be381b8ae 257 SUPERFAMILY SSF55120 2 237 2.56E-62 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3030 5cadb835cb1bea3b904edb5a4e5220a2 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 116 8.8E-25 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YPK_3030 5cadb835cb1bea3b904edb5a4e5220a2 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 19.17 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YPK_3030 5cadb835cb1bea3b904edb5a4e5220a2 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 120 3.1E-38 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YPK_0048 cf93696230285127cfc6c5dbec9cee3b 409 Pfam PF07690 Major Facilitator Superfamily 25 364 4.9E-31 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0048 cf93696230285127cfc6c5dbec9cee3b 409 Gene3D G3DSA:1.20.1720.10 19 400 3.2E-64 T 12-10-2018 YPK_0048 cf93696230285127cfc6c5dbec9cee3b 409 SUPERFAMILY SSF103473 7 401 3.66E-50 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0050 e3f516bf73be6822e9dab291c1c416dd 330 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 330 40.228 T 12-10-2018 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 YPK_0050 e3f516bf73be6822e9dab291c1c416dd 330 Pfam PF01757 Acyltransferase family 6 317 8.9E-31 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 YPK_0995 a470ebf96bb16239c575091472721c65 258 SMART SM01134 74 235 4.0E-67 T 12-10-2018 YPK_0995 a470ebf96bb16239c575091472721c65 258 SMART SM00420 7 59 3.4E-14 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0995 a470ebf96bb16239c575091472721c65 258 Pfam PF00455 DeoR C terminal sensor domain 77 234 1.8E-51 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain YPK_0995 a470ebf96bb16239c575091472721c65 258 Gene3D G3DSA:1.10.10.10 2 58 3.3E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0995 a470ebf96bb16239c575091472721c65 258 SUPERFAMILY SSF46785 6 59 1.63E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0995 a470ebf96bb16239c575091472721c65 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 25 39 2.1E-5 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0995 a470ebf96bb16239c575091472721c65 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 39 57 2.1E-5 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_0995 a470ebf96bb16239c575091472721c65 258 SUPERFAMILY SSF100950 76 237 3.63E-31 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_0995 a470ebf96bb16239c575091472721c65 258 Pfam PF08220 DeoR-like helix-turn-helix domain 7 58 8.4E-15 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 16 395 6.0E-148 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 46 65 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 293 312 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 327 345 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 155 175 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 19 42 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 193 215 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 232 251 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 91 111 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PRINTS PR00166 Aromatic amino acid permease signature 348 367 3.2E-98 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 Gene3D G3DSA:1.20.1740.10 11 414 2.5E-6 T 12-10-2018 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PIRSF PIRSF006060 13 306 2.8E-11 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 PIRSF PIRSF006060 307 413 7.6 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2776 58774cf9ab7f002db0eb4c47bed7e082 414 Pfam PF03222 Tryptophan/tyrosine permease family 11 402 1.0E-144 T 12-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 YPK_1335 c3eeb80f21d98797db8997e5b69f7a8f 429 Gene3D G3DSA:3.90.1150.10 7 423 9.0E-146 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1335 c3eeb80f21d98797db8997e5b69f7a8f 429 PIRSF PIRSF000521 2 134 0.0022 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_1335 c3eeb80f21d98797db8997e5b69f7a8f 429 PIRSF PIRSF000521 128 429 9.6E-37 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_1335 c3eeb80f21d98797db8997e5b69f7a8f 429 SUPERFAMILY SSF53383 23 427 8.91E-123 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1335 c3eeb80f21d98797db8997e5b69f7a8f 429 Pfam PF00202 Aminotransferase class-III 25 426 7.6E-120 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_1335 c3eeb80f21d98797db8997e5b69f7a8f 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 280 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_1335 c3eeb80f21d98797db8997e5b69f7a8f 429 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 8 428 4.9E-175 T 12-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 YPK_1335 c3eeb80f21d98797db8997e5b69f7a8f 429 Gene3D G3DSA:3.40.640.10 58 325 9.0E-146 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0587 cdafbfd88efb6e23f1001f71cb26f43c 1117 Gene3D G3DSA:1.50.10.10 602 1026 1.3E-71 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 YPK_0587 cdafbfd88efb6e23f1001f71cb26f43c 1117 SUPERFAMILY SSF48208 567 1091 5.87E-37 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 43.408 T 12-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 Pfam PF00682 HMGL-like 4 273 1.5E-105 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 7.3E-37 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 Gene3D G3DSA:1.10.238.260 280 392 3.7E-33 T 12-10-2018 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 SMART SM00917 369 500 2.0E-38 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 SUPERFAMILY SSF110921 392 499 6.67E-26 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 SUPERFAMILY SSF51569 1 291 1.43E-100 T 12-10-2018 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 Gene3D G3DSA:3.30.160.270 393 501 9.7E-12 T 12-10-2018 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 Gene3D G3DSA:3.20.20.70 1 277 5.7E-108 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 7.0E-252 T 12-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YPK_3535 3bcf9ae13a6e102280e48b5b71576fa0 520 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 PIRSF PIRSF004749 1 169 2.5E-56 T 12-10-2018 IPR023635 Peptide deformylase YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.435 T 12-10-2018 IPR023635 Peptide deformylase YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 1.2E-64 T 12-10-2018 IPR023635 Peptide deformylase YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 Gene3D G3DSA:3.90.45.10 2 169 9.2E-67 T 12-10-2018 IPR036821 Peptide deformylase superfamily YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 PRINTS PR01576 Peptide deformylase signature 120 149 1.9E-38 T 12-10-2018 IPR023635 Peptide deformylase YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 PRINTS PR01576 Peptide deformylase signature 101 119 1.9E-38 T 12-10-2018 IPR023635 Peptide deformylase YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 PRINTS PR01576 Peptide deformylase signature 33 62 1.9E-38 T 12-10-2018 IPR023635 Peptide deformylase YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 PRINTS PR01576 Peptide deformylase signature 89 100 1.9E-38 T 12-10-2018 IPR023635 Peptide deformylase YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 Pfam PF01327 Polypeptide deformylase 4 152 1.3E-49 T 12-10-2018 IPR023635 Peptide deformylase YPK_0316 01b5a1b1b3cddddbbd146d33a14ec30a 170 SUPERFAMILY SSF56420 3 165 9.16E-62 T 12-10-2018 IPR036821 Peptide deformylase superfamily YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 Pfam PF01565 FAD binding domain 52 192 2.2E-35 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 SUPERFAMILY SSF46548 516 691 2.35E-8 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 Gene3D G3DSA:3.30.465.40 240 301 1.4E-5 T 12-10-2018 YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 Gene3D G3DSA:3.30.465.40 18 206 2.2E-44 T 12-10-2018 YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 539 1.2E-61 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 Pfam PF13183 4Fe-4S dicluster domain 577 688 2.4E-12 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 674 685 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 SUPERFAMILY SSF56176 18 282 8.36E-53 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_1845 4ae855649696cb6516b4602b05cee0e5 1018 SUPERFAMILY SSF55103 258 542 1.96E-53 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 134 1.1E-44 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 Gene3D G3DSA:2.60.15.10 4 91 2.7E-31 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 88 1.0E-38 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 7 85 1.7E-28 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 90 134 1.6E-12 T 12-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 SUPERFAMILY SSF46604 90 138 1.83E-14 T 12-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 4 132 21.0 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 SUPERFAMILY SSF51344 4 87 6.93E-24 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4227 d3e43d909f353a6ae466c95f4e0b3af9 140 Gene3D G3DSA:1.20.5.440 92 135 4.3E-19 T 12-10-2018 YPK_1426 4e45ab29893a18a545e66a480a42821a 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 12-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YPK_1426 4e45ab29893a18a545e66a480a42821a 169 Gene3D G3DSA:2.70.70.10 9 169 2.4E-63 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_1426 4e45ab29893a18a545e66a480a42821a 169 SUPERFAMILY SSF51261 12 167 4.36E-56 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_1426 4e45ab29893a18a545e66a480a42821a 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 2.6E-49 T 12-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YPK_1426 4e45ab29893a18a545e66a480a42821a 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 3.2E-50 T 12-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 YPK_2648 578d5548b3219df4688d269372e5ba47 466 SUPERFAMILY SSF55681 104 464 3.98E-96 T 12-10-2018 YPK_2648 578d5548b3219df4688d269372e5ba47 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 1.7E-11 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 YPK_2648 578d5548b3219df4688d269372e5ba47 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.2E-14 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2648 578d5548b3219df4688d269372e5ba47 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.2E-14 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2648 578d5548b3219df4688d269372e5ba47 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.2E-14 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2648 578d5548b3219df4688d269372e5ba47 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.2E-14 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2648 578d5548b3219df4688d269372e5ba47 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.548 T 12-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 YPK_2648 578d5548b3219df4688d269372e5ba47 466 SUPERFAMILY SSF50249 14 102 4.07E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2648 578d5548b3219df4688d269372e5ba47 466 Gene3D G3DSA:2.40.50.140 2 104 1.4E-21 T 12-10-2018 YPK_2648 578d5548b3219df4688d269372e5ba47 466 Gene3D G3DSA:3.30.930.10 109 465 1.6E-109 T 12-10-2018 YPK_2648 578d5548b3219df4688d269372e5ba47 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 6.5E-83 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2648 578d5548b3219df4688d269372e5ba47 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 7.2E-209 T 12-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 YPK_0283 c59cc932dc0db3057b44a97bb65e01eb 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 1.4E-92 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0283 c59cc932dc0db3057b44a97bb65e01eb 209 SUPERFAMILY SSF50447 1 208 2.38E-80 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_0283 c59cc932dc0db3057b44a97bb65e01eb 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 41.005 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0283 c59cc932dc0db3057b44a97bb65e01eb 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 12-10-2018 IPR019926 Ribosomal protein L3, conserved site YPK_0283 c59cc932dc0db3057b44a97bb65e01eb 209 Gene3D G3DSA:2.40.30.10 128 209 5.5E-19 T 12-10-2018 YPK_0283 c59cc932dc0db3057b44a97bb65e01eb 209 Pfam PF00297 Ribosomal protein L3 94 182 1.2E-12 T 12-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0283 c59cc932dc0db3057b44a97bb65e01eb 209 Gene3D G3DSA:2.40.50.620 32 94 6.1E-15 T 12-10-2018 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 Pfam PF02096 60Kd inner membrane protein 353 532 1.8E-60 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 Pfam PF14849 YidC periplasmic domain 61 342 9.4E-90 T 12-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR01900 YidC translocation/secretion protein signature 487 511 1.5E-29 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR01900 YidC translocation/secretion protein signature 338 354 1.5E-29 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR01900 YidC translocation/secretion protein signature 467 482 1.5E-29 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 Gene3D G3DSA:2.70.98.90 56 332 8.4E-109 T 12-10-2018 IPR038221 YidC, periplasmic domain superfamily YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 352 532 1.5E-69 T 12-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 351 2.0E-120 T 12-10-2018 IPR028053 Membrane insertase YidC, N-terminal YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 534 26.628 T 12-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 414 437 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 217 235 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 498 521 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 250 265 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 158 178 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 323 343 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 461 483 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_4246 e19c7f67c88b4407a512b11b57f8c4b5 546 PRINTS PR00701 60kDa inner membrane protein signature 66 87 1.3E-105 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 YPK_2981 1c1e2a84be181ac307e83567490e0dd6 176 Pfam PF13356 Arm DNA-binding domain 8 94 2.1E-17 T 12-10-2018 IPR025166 Integrase, DNA-binding domain YPK_2981 1c1e2a84be181ac307e83567490e0dd6 176 Gene3D G3DSA:3.30.160.390 6 110 6.1E-29 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YPK_2981 1c1e2a84be181ac307e83567490e0dd6 176 Gene3D G3DSA:1.10.150.130 111 171 1.3E-14 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_0436 871305680bd53303a84fb68e338c73fb 201 SUPERFAMILY SSF53697 17 190 1.3E-34 T 12-10-2018 YPK_0436 871305680bd53303a84fb68e338c73fb 201 Gene3D G3DSA:3.40.50.10490 9 199 3.8E-48 T 12-10-2018 YPK_0436 871305680bd53303a84fb68e338c73fb 201 Pfam PF01380 SIS domain 40 169 7.3E-19 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_1827 24abeca5f6569bda1c410c7676f07ec8 152 Pfam PF10697 Protein of unknown function (DUF2502) 23 102 1.1E-33 T 12-10-2018 IPR019638 Protein of unknown function DUF2502 YPK_0305 27f9ad9f09ec293cd83e76776f5acb21 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 8.3E-33 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0305 27f9ad9f09ec293cd83e76776f5acb21 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 3.6E-52 T 12-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0305 27f9ad9f09ec293cd83e76776f5acb21 118 Gene3D G3DSA:1.10.8.50 1 71 7.0E-27 T 12-10-2018 YPK_0305 27f9ad9f09ec293cd83e76776f5acb21 118 PIRSF PIRSF002134 1 118 7.3E-41 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0305 27f9ad9f09ec293cd83e76776f5acb21 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 12-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0305 27f9ad9f09ec293cd83e76776f5acb21 118 SUPERFAMILY SSF46946 2 114 2.06E-45 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 YPK_0305 27f9ad9f09ec293cd83e76776f5acb21 118 Gene3D G3DSA:4.10.910.10 72 118 2.3E-25 T 12-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0305 27f9ad9f09ec293cd83e76776f5acb21 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.012 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_1774 c14513e2fb37ba7ebf36931d8f314fba 815 Gene3D G3DSA:2.60.40.3110 244 330 6.7E-8 T 12-10-2018 YPK_1774 c14513e2fb37ba7ebf36931d8f314fba 815 Pfam PF13953 PapC C-terminal domain 739 801 2.8E-11 T 12-10-2018 IPR025949 PapC-like, C-terminal domain YPK_1774 c14513e2fb37ba7ebf36931d8f314fba 815 Pfam PF00577 Outer membrane usher protein 234 712 7.0E-31 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_1774 c14513e2fb37ba7ebf36931d8f314fba 815 Gene3D G3DSA:2.60.40.2610 643 733 1.0E-9 T 12-10-2018 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 Pfam PF00672 HAMP domain 182 225 7.0E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 SUPERFAMILY SSF47384 232 289 2.16E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 Gene3D G3DSA:3.30.565.10 294 443 5.2E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 Gene3D G3DSA:1.10.287.130 178 288 2.5E-22 T 12-10-2018 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 SUPERFAMILY SSF55874 292 442 6.68E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 SMART SM00388 233 293 2.0E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 SMART SM00387 332 440 2.5E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 1.7E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 SMART SM00304 180 232 1.7E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 439 1.4E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 3.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 3.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_0173 b5eeac0da456dd67d4ab4d5e85cd8e39 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 3.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 828 0.0 T 12-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Gene3D G3DSA:3.40.50.740 96 623 0.0 T 12-10-2018 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 39 92 1.1E-17 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 23 1.5E-4 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 SUPERFAMILY SSF53706 37 700 3.27E-201 T 12-10-2018 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Pfam PF01568 Molydopterin dinucleotide binding domain 714 822 1.4E-24 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 SUPERFAMILY SSF50692 688 828 3.62E-42 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 828 32.325 T 12-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Pfam PF00384 Molybdopterin oxidoreductase 96 568 8.0E-89 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 44 61 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 SMART SM00926 39 93 1.2E-15 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Gene3D G3DSA:2.40.40.20 704 828 1.8E-48 T 12-10-2018 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Gene3D G3DSA:3.40.228.10 175 703 0.0 T 12-10-2018 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Gene3D G3DSA:3.30.200.210 39 666 0.0 T 12-10-2018 YPK_1387 3987fa0b633faf259b085cf1f981d82a 830 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 2 24 2.1E-6 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YPK_0425 b77c683cf63bacffb06c83f3b44be0b5 67 PIRSF PIRSF003108 2 67 8.3E-15 T 12-10-2018 IPR026262 Antitoxin DinJ GO:0000986|GO:0015643|GO:0044010 YPK_0425 b77c683cf63bacffb06c83f3b44be0b5 67 Pfam PF04221 RelB antitoxin 5 57 7.3E-10 T 12-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ YPK_3970 36b02e9f0f4548796be4b86fb5a603c6 233 Gene3D G3DSA:3.40.50.300 1 233 2.7E-64 T 12-10-2018 YPK_3970 36b02e9f0f4548796be4b86fb5a603c6 233 Pfam PF00005 ABC transporter 17 161 1.6E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3970 36b02e9f0f4548796be4b86fb5a603c6 233 SMART SM00382 26 212 1.3E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3970 36b02e9f0f4548796be4b86fb5a603c6 233 PIRSF PIRSF039137 1 233 7.4E-102 T 12-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 YPK_3970 36b02e9f0f4548796be4b86fb5a603c6 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3970 36b02e9f0f4548796be4b86fb5a603c6 233 SUPERFAMILY SSF52540 2 230 5.01E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 Gene3D G3DSA:3.20.20.80 2 321 6.5E-82 T 12-10-2018 YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 Gene3D G3DSA:2.10.10.20 422 467 1.1E-10 T 12-10-2018 YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 SUPERFAMILY SSF49265 332 417 2.89E-14 T 12-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 Pfam PF00704 Glycosyl hydrolases family 18 22 299 1.4E-31 T 12-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 SMART SM00636 20 299 0.0032 T 12-10-2018 IPR011583 Chitinase II GO:0008061 YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 ProSitePatterns PS01095 Chitinases family 18 active site. 128 136 - T 12-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 SMART SM00060 333 407 8.6E-7 T 12-10-2018 IPR003961 Fibronectin type III GO:0005515 YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 SUPERFAMILY SSF51055 424 467 9.81E-13 T 12-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 Gene3D G3DSA:2.60.40.10 332 417 5.4E-17 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0693 91563ebf187d1ba9ae2ce0e72c59b074 471 SUPERFAMILY SSF51445 19 311 7.27E-51 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_2907 1ec410981d399026dc132778278c600a 454 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 419 436 6.1E-12 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_2907 1ec410981d399026dc132778278c600a 454 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 436 454 6.1E-12 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_2907 1ec410981d399026dc132778278c600a 454 SMART SM00448 6 117 1.7E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2907 1ec410981d399026dc132778278c600a 454 Gene3D G3DSA:1.10.10.60 408 451 7.8E-15 T 12-10-2018 YPK_2907 1ec410981d399026dc132778278c600a 454 SUPERFAMILY SSF52540 142 385 4.14E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2907 1ec410981d399026dc132778278c600a 454 SUPERFAMILY SSF46689 356 452 7.17E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2907 1ec410981d399026dc132778278c600a 454 Pfam PF00158 Sigma-54 interaction domain 143 309 7.9E-69 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YPK_2907 1ec410981d399026dc132778278c600a 454 Gene3D G3DSA:3.40.50.2300 1 139 2.3E-42 T 12-10-2018 YPK_2907 1ec410981d399026dc132778278c600a 454 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 356 365 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site YPK_2907 1ec410981d399026dc132778278c600a 454 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 167 180 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YPK_2907 1ec410981d399026dc132778278c600a 454 Pfam PF02954 Bacterial regulatory protein, Fis family 413 452 2.5E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_2907 1ec410981d399026dc132778278c600a 454 Pfam PF00072 Response regulator receiver domain 8 115 1.1E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2907 1ec410981d399026dc132778278c600a 454 Gene3D G3DSA:1.10.8.60 314 392 1.2E-30 T 12-10-2018 YPK_2907 1ec410981d399026dc132778278c600a 454 SUPERFAMILY SSF52172 4 187 5.69E-50 T 12-10-2018 IPR011006 CheY-like superfamily YPK_2907 1ec410981d399026dc132778278c600a 454 SMART SM00382 163 306 5.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2907 1ec410981d399026dc132778278c600a 454 Gene3D G3DSA:3.40.50.300 140 313 4.7E-60 T 12-10-2018 YPK_2105 1a077a9e2208c2bb84bd841cdad6cd2b 289 Gene3D G3DSA:2.60.120.10 149 253 5.1E-85 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_2105 1a077a9e2208c2bb84bd841cdad6cd2b 289 PIRSF PIRSF006232 2 288 1.4E-90 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 YPK_2105 1a077a9e2208c2bb84bd841cdad6cd2b 289 Pfam PF02678 Pirin 20 127 2.8E-34 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 YPK_2105 1a077a9e2208c2bb84bd841cdad6cd2b 289 Pfam PF05726 Pirin C-terminal cupin domain 182 284 3.8E-27 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 YPK_2105 1a077a9e2208c2bb84bd841cdad6cd2b 289 Gene3D G3DSA:2.60.120.10 17 279 5.1E-85 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_2105 1a077a9e2208c2bb84bd841cdad6cd2b 289 SUPERFAMILY SSF51182 4 286 4.16E-85 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_1324 d7ac21d87460bcd301116b1c3ede3a5b 296 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 3 296 46.873 T 12-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 YPK_1324 d7ac21d87460bcd301116b1c3ede3a5b 296 SMART SM00046 3 129 5.4E-17 T 12-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 YPK_1324 d7ac21d87460bcd301116b1c3ede3a5b 296 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 3 295 1.7E-152 T 12-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 YPK_1324 d7ac21d87460bcd301116b1c3ede3a5b 296 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 126 8.2E-27 T 12-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 YPK_1324 d7ac21d87460bcd301116b1c3ede3a5b 296 Gene3D G3DSA:3.40.50.10330 22 284 1.1E-88 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 YPK_1324 d7ac21d87460bcd301116b1c3ede3a5b 296 SUPERFAMILY SSF111331 1 293 1.77E-69 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPK_1324 d7ac21d87460bcd301116b1c3ede3a5b 296 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 5 290 2.0E-92 T 12-10-2018 IPR005218 Diacylglycerol/lipid kinase YPK_1324 d7ac21d87460bcd301116b1c3ede3a5b 296 Gene3D G3DSA:2.60.200.40 123 281 1.1E-88 T 12-10-2018 YPK_1467 2ac4cf7361c48d4c464692dd00c9bb88 560 PRINTS PR01021 OMPA domain signature 474 489 1.3E-5 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_1467 2ac4cf7361c48d4c464692dd00c9bb88 560 PRINTS PR01021 OMPA domain signature 489 505 1.3E-5 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_1467 2ac4cf7361c48d4c464692dd00c9bb88 560 Pfam PF00691 OmpA family 441 539 1.7E-17 T 12-10-2018 IPR006665 OmpA-like domain YPK_1467 2ac4cf7361c48d4c464692dd00c9bb88 560 Gene3D G3DSA:3.30.1330.60 411 554 8.7E-30 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_1467 2ac4cf7361c48d4c464692dd00c9bb88 560 SUPERFAMILY SSF103088 440 547 1.7E-27 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_2239 32cccfc13fdee411e793e3c0a1b8b352 444 Gene3D G3DSA:3.90.550.10 69 286 1.0E-44 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2239 32cccfc13fdee411e793e3c0a1b8b352 444 Pfam PF00535 Glycosyl transferase family 2 78 245 3.3E-36 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YPK_2239 32cccfc13fdee411e793e3c0a1b8b352 444 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 30 438 1.8E-193 T 12-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 YPK_2239 32cccfc13fdee411e793e3c0a1b8b352 444 SUPERFAMILY SSF53448 68 344 6.25E-64 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 Pfam PF02050 Flagellar FliJ protein 19 141 6.8E-36 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 143 6.3E-34 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 PIRSF PIRSF019404 1 147 8.6E-51 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 PRINTS PR01004 Flagellar FliJ protein signature 126 146 2.8E-39 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 PRINTS PR01004 Flagellar FliJ protein signature 86 107 2.8E-39 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 PRINTS PR01004 Flagellar FliJ protein signature 44 61 2.8E-39 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 PRINTS PR01004 Flagellar FliJ protein signature 27 43 2.8E-39 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 PRINTS PR01004 Flagellar FliJ protein signature 108 126 2.8E-39 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 PRINTS PR01004 Flagellar FliJ protein signature 63 84 2.8E-39 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2395 9dd16107ff2c9b3afa3801697fd95e22 148 PRINTS PR01004 Flagellar FliJ protein signature 4 26 2.8E-39 T 12-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 7 241 2.9E-54 T 12-10-2018 YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 Gene3D G3DSA:3.40.50.720 2 243 3.4E-66 T 12-10-2018 YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.8E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.8E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.8E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.8E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.8E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.8E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 9.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 9.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_2609 57b47e2f7aaf04986cab7cc28d2ff21c 245 SUPERFAMILY SSF51735 3 243 1.34E-63 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3224 a7c164ec5e2417c467ff41e999723040 346 SUPERFAMILY SSF53686 21 334 3.14E-68 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_3224 a7c164ec5e2417c467ff41e999723040 346 Gene3D G3DSA:3.40.50.1100 22 322 8.8E-68 T 12-10-2018 YPK_3224 a7c164ec5e2417c467ff41e999723040 346 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 314 1.0E-42 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_3224 a7c164ec5e2417c467ff41e999723040 346 Gene3D G3DSA:3.40.50.1100 49 155 8.8E-68 T 12-10-2018 YPK_0299 7cd6b047f5dcf98077b20479ca32345f 117 SUPERFAMILY SSF53137 3 115 2.62E-53 T 12-10-2018 YPK_0299 7cd6b047f5dcf98077b20479ca32345f 117 Gene3D G3DSA:3.30.420.100 1 117 1.7E-46 T 12-10-2018 YPK_0299 7cd6b047f5dcf98077b20479ca32345f 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.23 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0299 7cd6b047f5dcf98077b20479ca32345f 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 5.5E-44 T 12-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0299 7cd6b047f5dcf98077b20479ca32345f 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 8.4E-46 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0856 6ef67eac0ae1de1b2f945ec3cb749eaa 266 Gene3D G3DSA:3.30.110.170 44 245 5.2E-51 T 12-10-2018 YPK_0856 6ef67eac0ae1de1b2f945ec3cb749eaa 266 Gene3D G3DSA:3.30.70.2970 53 160 5.2E-51 T 12-10-2018 YPK_0856 6ef67eac0ae1de1b2f945ec3cb749eaa 266 Pfam PF04402 Protein of unknown function (DUF541) 43 244 1.9E-44 T 12-10-2018 IPR007497 Protein of unknown function DUF541 YPK_0036 e4b851e7eb0a247c859528074d295576 274 SUPERFAMILY SSF53927 25 273 6.62E-80 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YPK_0036 e4b851e7eb0a247c859528074d295576 274 Gene3D G3DSA:3.10.20.10 40 125 1.4E-10 T 12-10-2018 YPK_0036 e4b851e7eb0a247c859528074d295576 274 Gene3D G3DSA:3.40.140.10 127 274 1.2E-45 T 12-10-2018 YPK_0036 e4b851e7eb0a247c859528074d295576 274 PIRSF PIRSF015626 4 274 3.5E-79 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 YPK_0036 e4b851e7eb0a247c859528074d295576 274 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 13 274 33.227 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 YPK_0036 e4b851e7eb0a247c859528074d295576 274 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 34 274 7.3E-89 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 YPK_0036 e4b851e7eb0a247c859528074d295576 274 Pfam PF02634 FdhD/NarQ family 38 273 6.1E-72 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 YPK_1406 51f0682612b8b54ab4b570a4c8d269d6 292 SUPERFAMILY SSF46689 12 87 1.25E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1406 51f0682612b8b54ab4b570a4c8d269d6 292 SUPERFAMILY SSF53697 105 289 1.26E-43 T 12-10-2018 YPK_1406 51f0682612b8b54ab4b570a4c8d269d6 292 Gene3D G3DSA:3.40.50.10490 108 290 2.1E-47 T 12-10-2018 YPK_1406 51f0682612b8b54ab4b570a4c8d269d6 292 Pfam PF01380 SIS domain 138 265 2.0E-19 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_1406 51f0682612b8b54ab4b570a4c8d269d6 292 Gene3D G3DSA:1.10.10.10 9 89 1.9E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1406 51f0682612b8b54ab4b570a4c8d269d6 292 Pfam PF01418 Helix-turn-helix domain, rpiR family 13 86 9.4E-23 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Gene3D G3DSA:3.90.930.1 553 666 5.2E-6 T 12-10-2018 YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Pfam PF05488 PAAR motif 83 149 1.5E-12 T 12-10-2018 IPR008727 PAAR motif YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Pfam PF05593 RHS Repeat 662 695 6.7E-6 T 12-10-2018 IPR031325 RHS repeat YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Pfam PF05593 RHS Repeat 640 671 1.0E-6 T 12-10-2018 IPR031325 RHS repeat YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Pfam PF05593 RHS Repeat 865 901 4.4E-5 T 12-10-2018 IPR031325 RHS repeat YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Gene3D G3DSA:2.60.200.60 72 159 1.3E-13 T 12-10-2018 YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1207 1291 1.7E-26 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Pfam PF03527 RHS protein 1180 1216 3.5E-17 T 12-10-2018 IPR001826 RHS protein YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 642 678 1.6E-5 T 12-10-2018 IPR006530 YD repeat YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 722 761 5.2E-6 T 12-10-2018 IPR006530 YD repeat YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 680 720 1.4E-4 T 12-10-2018 IPR006530 YD repeat YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 414 440 0.0015 T 12-10-2018 IPR006530 YD repeat YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 865 904 3.0E-4 T 12-10-2018 IPR006530 YD repeat YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Gene3D G3DSA:2.180.10.10 683 883 2.4E-7 T 12-10-2018 YPK_0403 e3e5012ffc490ffe4a14b3deda18e123 1390 Gene3D G3DSA:2.180.10.10 909 1291 1.7E-42 T 12-10-2018 YPK_3247 aadb9f1586c1daf1a08b52989355c525 163 SUPERFAMILY SSF89963 2 89 2.22E-30 T 12-10-2018 IPR036183 YajQ-like superfamily YPK_3247 aadb9f1586c1daf1a08b52989355c525 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 163 30.101 T 12-10-2018 IPR007551 Protein of unknown function DUF520 YPK_3247 aadb9f1586c1daf1a08b52989355c525 163 Pfam PF04461 Protein of unknown function (DUF520) 2 162 1.6E-65 T 12-10-2018 IPR007551 Protein of unknown function DUF520 YPK_3247 aadb9f1586c1daf1a08b52989355c525 163 Gene3D G3DSA:3.30.70.860 98 163 6.9E-32 T 12-10-2018 IPR035571 UPF0234-like, C-terminal YPK_3247 aadb9f1586c1daf1a08b52989355c525 163 SUPERFAMILY SSF89963 91 163 3.14E-29 T 12-10-2018 IPR036183 YajQ-like superfamily YPK_3247 aadb9f1586c1daf1a08b52989355c525 163 Gene3D G3DSA:3.30.70.990 9 97 1.8E-32 T 12-10-2018 IPR035570 UPF0234, N-terminal YPK_0824 816ac395e74351bb24aa65d59d806f1b 244 Pfam PF11101 Protein of unknown function (DUF2884) 29 243 3.6E-46 T 12-10-2018 IPR021307 Protein of unknown function DUF2884 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 42 456 2.3E-112 T 12-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 Pfam PF13533 Biotin-lipoyl like 85 130 1.7E-8 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 Gene3D G3DSA:2.40.30.170 323 438 1.4E-10 T 12-10-2018 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 Gene3D G3DSA:2.40.50.100 81 114 2.0E-8 T 12-10-2018 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 51 74 8.1E-60 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 353 377 8.1E-60 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 435 455 8.1E-60 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 320 341 8.1E-60 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 93 113 8.1E-60 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 377 400 8.1E-60 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 420 435 8.1E-60 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 ProSitePatterns PS00543 HlyD family secretion proteins signature. 420 442 - T 12-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 Gene3D G3DSA:1.10.287.470 115 195 2.0E-8 T 12-10-2018 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 SUPERFAMILY SSF111369 84 150 9.68E-6 T 12-10-2018 YPK_2003 bfbd73abcfb914cfa995f0c50c6ea0a5 456 Pfam PF13437 HlyD family secretion protein 307 410 9.0E-16 T 12-10-2018 YPK_4237 1aa4d9b77d8a19deb731db99aae4336b 284 SUPERFAMILY SSF53850 12 262 8.83E-66 T 12-10-2018 YPK_4237 1aa4d9b77d8a19deb731db99aae4336b 284 Gene3D G3DSA:3.40.190.10 128 221 2.9E-63 T 12-10-2018 YPK_4237 1aa4d9b77d8a19deb731db99aae4336b 284 Gene3D G3DSA:3.40.190.10 32 256 2.9E-63 T 12-10-2018 YPK_4237 1aa4d9b77d8a19deb731db99aae4336b 284 SMART SM00062 40 263 3.3E-63 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_4237 1aa4d9b77d8a19deb731db99aae4336b 284 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 261 4.3E-57 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_4237 1aa4d9b77d8a19deb731db99aae4336b 284 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 64 77 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site YPK_1453 43e416198948d17b46f74cee8184f192 198 Pfam PF02613 Nitrate reductase delta subunit 46 154 9.0E-19 T 12-10-2018 IPR020945 DMSO/Nitrate reductase chaperone YPK_1453 43e416198948d17b46f74cee8184f192 198 PIRSF PIRSF004690 4 198 3.1E-37 T 12-10-2018 IPR026269 Tat proofreading chaperone DmsD-type YPK_1453 43e416198948d17b46f74cee8184f192 198 Gene3D G3DSA:1.10.3480.10 5 198 2.4E-40 T 12-10-2018 YPK_1453 43e416198948d17b46f74cee8184f192 198 SUPERFAMILY SSF89155 6 197 3.4E-48 T 12-10-2018 IPR036411 TorD-like superfamily YPK_2775 66d8143eab340328fec0d0ed33a195c4 84 Pfam PF03692 Putative zinc- or iron-chelating domain 2 60 7.9E-5 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein YPK_1894 ee5be7860ce7f94902fdf87466b1308d 221 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 2.0E-95 T 12-10-2018 IPR014319 Phage shock protein, PspA YPK_1894 ee5be7860ce7f94902fdf87466b1308d 221 Pfam PF04012 PspA/IM30 family 2 216 8.8E-46 T 12-10-2018 IPR007157 PspA/IM30 YPK_0280 96055f2032bce55f850cd698f59e4ab5 64 Gene3D G3DSA:1.10.10.1100 1 57 1.2E-19 T 12-10-2018 YPK_0280 96055f2032bce55f850cd698f59e4ab5 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 52 8.9E-15 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain YPK_0017 94a64e37f7aed3e121406040f053d60e 326 Gene3D G3DSA:3.40.50.720 10 311 3.2E-107 T 12-10-2018 YPK_0017 94a64e37f7aed3e121406040f053d60e 326 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 176 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 YPK_0017 94a64e37f7aed3e121406040f053d60e 326 SUPERFAMILY SSF52283 1 133 7.18E-30 T 12-10-2018 YPK_0017 94a64e37f7aed3e121406040f053d60e 326 Hamap MF_01667 Glyoxylate/hydroxypyruvate reductase B [ghrB]. 1 324 67.509 T 12-10-2018 IPR023756 Glyoxylate/hydroxypyruvate reductase B GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 YPK_0017 94a64e37f7aed3e121406040f053d60e 326 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 9.4E-29 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YPK_0017 94a64e37f7aed3e121406040f053d60e 326 SUPERFAMILY SSF51735 100 288 5.49E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0017 94a64e37f7aed3e121406040f053d60e 326 Gene3D G3DSA:3.40.50.720 98 286 3.2E-107 T 12-10-2018 YPK_0017 94a64e37f7aed3e121406040f053d60e 326 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 1.2E-60 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YPK_2465 07c23e56a12d22fc79c4984bc930474e 265 Pfam PF03609 PTS system sorbose-specific iic component 6 237 4.2E-74 T 12-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 YPK_2465 07c23e56a12d22fc79c4984bc930474e 265 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 265 1.2E-123 T 12-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 YPK_2614 b1380764e2965182fe81e14a2473d64e 805 Gene3D G3DSA:3.40.462.20 557 754 6.8E-60 T 12-10-2018 YPK_2614 b1380764e2965182fe81e14a2473d64e 805 Pfam PF13480 Acetyltransferase (GNAT) domain 187 322 8.9E-11 T 12-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 YPK_2614 b1380764e2965182fe81e14a2473d64e 805 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 389 422 - T 12-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 YPK_2614 b1380764e2965182fe81e14a2473d64e 805 SUPERFAMILY SSF55729 175 334 2.2E-20 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_2614 b1380764e2965182fe81e14a2473d64e 805 Gene3D G3DSA:3.40.630.30 167 330 6.6E-6 T 12-10-2018 YPK_2614 b1380764e2965182fe81e14a2473d64e 805 Gene3D G3DSA:3.30.43.10 361 442 1.4E-15 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 YPK_2614 b1380764e2965182fe81e14a2473d64e 805 SUPERFAMILY SSF56176 372 555 6.07E-39 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_2614 b1380764e2965182fe81e14a2473d64e 805 Gene3D G3DSA:3.30.465.10 455 783 6.8E-60 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_2614 b1380764e2965182fe81e14a2473d64e 805 Pfam PF01565 FAD binding domain 389 525 2.2E-29 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 SUPERFAMILY SSF100950 74 233 8.89E-26 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 3.3E-17 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.4E-6 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.4E-6 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 Gene3D G3DSA:1.10.10.10 2 57 7.2E-9 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 SMART SM01134 73 233 5.7E-64 T 12-10-2018 YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 SMART SM00420 6 58 1.3E-23 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 Pfam PF00455 DeoR C terminal sensor domain 77 232 5.0E-49 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 SUPERFAMILY SSF46785 5 65 7.76E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2255 0fb781fe57d46b8be78aabd3c85a45fb 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 18.986 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 248 8.1E-24 T 12-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 2.2E-20 T 12-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 Gene3D G3DSA:3.30.2350.10 1 249 1.3E-93 T 12-10-2018 YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 Gene3D G3DSA:2.30.130.10 250 313 6.5E-28 T 12-10-2018 IPR036974 PUA domain superfamily GO:0003723 YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 8.8E-58 T 12-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 SUPERFAMILY SSF88697 251 310 2.14E-14 T 12-10-2018 IPR015947 PUA-like superfamily YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 219 5.8E-90 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3728 948a5b3e5c784e1f6798eeeaee647990 324 SUPERFAMILY SSF55120 10 248 2.27E-82 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3417 a175ec40907aabce6175bc4754b5c36e 323 Gene3D G3DSA:3.40.50.1360 57 322 9.8E-88 T 12-10-2018 YPK_3417 a175ec40907aabce6175bc4754b5c36e 323 Pfam PF04198 Putative sugar-binding domain 63 317 1.1E-80 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YPK_3417 a175ec40907aabce6175bc4754b5c36e 323 SUPERFAMILY SSF100950 67 317 1.42E-69 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_3417 a175ec40907aabce6175bc4754b5c36e 323 Gene3D G3DSA:1.10.10.60 6 56 3.0E-20 T 12-10-2018 YPK_3417 a175ec40907aabce6175bc4754b5c36e 323 Pfam PF13518 Helix-turn-helix domain 17 53 2.9E-6 T 12-10-2018 YPK_1269 3eee4759c039185463fc81ba288edc3f 385 SUPERFAMILY SSF103473 7 372 5.62E-38 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1269 3eee4759c039185463fc81ba288edc3f 385 Gene3D G3DSA:1.20.1250.20 4 180 8.9E-18 T 12-10-2018 YPK_1269 3eee4759c039185463fc81ba288edc3f 385 Gene3D G3DSA:1.20.1250.20 186 374 4.6E-36 T 12-10-2018 YPK_1269 3eee4759c039185463fc81ba288edc3f 385 Pfam PF12832 MFS_1 like family 8 360 3.9E-50 T 12-10-2018 IPR024989 Major facilitator superfamily associated domain YPK_1269 3eee4759c039185463fc81ba288edc3f 385 PIRSF PIRSF004925 1 384 3.5E-111 T 12-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter YPK_3016 150956a1e3a738c7b064580ec4fba705 207 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 5 164 27.726 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 YPK_3016 150956a1e3a738c7b064580ec4fba705 207 Pfam PF04390 Lipopolysaccharide-assembly 45 159 3.2E-13 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 YPK_3016 150956a1e3a738c7b064580ec4fba705 207 Gene3D G3DSA:3.30.160.150 16 164 6.9E-62 T 12-10-2018 YPK_3619 6fcf4c3b3e08084a05698aed34c4c843 376 Pfam PF13776 Domain of unknown function (DUF4172) 6 87 2.0E-26 T 12-10-2018 IPR025230 Domain of unknown function DUF4172 YPK_3619 6fcf4c3b3e08084a05698aed34c4c843 376 Gene3D G3DSA:1.10.10.10 280 373 2.1E-5 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3619 6fcf4c3b3e08084a05698aed34c4c843 376 SUPERFAMILY SSF140931 103 298 1.7E-38 T 12-10-2018 IPR036597 Fido-like domain superfamily YPK_3619 6fcf4c3b3e08084a05698aed34c4c843 376 Pfam PF02661 Fic/DOC family 117 227 1.7E-16 T 12-10-2018 IPR003812 Fido domain YPK_3619 6fcf4c3b3e08084a05698aed34c4c843 376 Gene3D G3DSA:1.10.3290.10 40 279 5.6E-38 T 12-10-2018 IPR036597 Fido-like domain superfamily YPK_3915 42815b59139c45c61689ed9295d0d68c 73 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 4 70 4.7E-25 T 12-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 YPK_3915 42815b59139c45c61689ed9295d0d68c 73 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 4 69 3.2E-24 T 12-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 YPK_2387 52695dc325caef3fc0145fcc007a8168 203 Gene3D G3DSA:1.10.1670.40 7 195 1.9E-65 T 12-10-2018 YPK_2387 52695dc325caef3fc0145fcc007a8168 203 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 44 181 1.0E-12 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YPK_2387 52695dc325caef3fc0145fcc007a8168 203 Gene3D G3DSA:1.10.340.30 35 146 1.9E-65 T 12-10-2018 YPK_2387 52695dc325caef3fc0145fcc007a8168 203 SUPERFAMILY SSF48150 35 198 1.64E-35 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 YPK_2387 52695dc325caef3fc0145fcc007a8168 203 SMART SM00478 49 201 5.5E-4 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 YPK_4198 a9b974e1e7afc839dc87cdf4f8cd8d10 89 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 8.4E-46 T 12-10-2018 IPR009383 Protein of unknown function DUF1040 YPK_4198 a9b974e1e7afc839dc87cdf4f8cd8d10 89 Gene3D G3DSA:1.10.1580.20 1 89 3.4E-46 T 12-10-2018 IPR038134 YihD-like superfamily YPK_4198 a9b974e1e7afc839dc87cdf4f8cd8d10 89 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 6.0E-46 T 12-10-2018 IPR009383 Protein of unknown function DUF1040 YPK_1720 d3af22d892a2b4495d4cd9367376a029 371 Gene3D G3DSA:2.30.30.280 214 282 1.4E-27 T 12-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 YPK_1720 d3af22d892a2b4495d4cd9367376a029 371 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 361 6.1E-156 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 YPK_1720 d3af22d892a2b4495d4cd9367376a029 371 Gene3D G3DSA:2.40.30.10 283 369 5.2E-34 T 12-10-2018 YPK_1720 d3af22d892a2b4495d4cd9367376a029 371 Pfam PF03054 tRNA methyl transferase 7 361 1.5E-142 T 12-10-2018 YPK_1720 d3af22d892a2b4495d4cd9367376a029 371 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 362 40.894 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 YPK_1720 d3af22d892a2b4495d4cd9367376a029 371 Gene3D G3DSA:3.40.50.620 1 212 2.0E-96 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_1720 d3af22d892a2b4495d4cd9367376a029 371 SUPERFAMILY SSF52402 5 245 2.43E-56 T 12-10-2018 YPK_0993 92bb86f917f33807bb0f1b905d804049 388 SUPERFAMILY SSF53697 19 377 1.11E-55 T 12-10-2018 YPK_0993 92bb86f917f33807bb0f1b905d804049 388 Gene3D G3DSA:3.40.50.10490 4 204 1.3E-54 T 12-10-2018 YPK_0993 92bb86f917f33807bb0f1b905d804049 388 Pfam PF01380 SIS domain 229 358 9.0E-13 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_0993 92bb86f917f33807bb0f1b905d804049 388 Pfam PF01380 SIS domain 54 192 8.3E-14 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_0993 92bb86f917f33807bb0f1b905d804049 388 Gene3D G3DSA:3.40.50.10490 205 380 1.2E-64 T 12-10-2018 YPK_0993 92bb86f917f33807bb0f1b905d804049 388 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 16 386 5.5E-164 T 12-10-2018 IPR014180 Sugar isomerase, AgaS GO:0016853 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 3.9E-27 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 1.2E-7 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 SMART SM00663 235 514 1.1E-184 T 12-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 3.6E-89 T 12-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1377 19.019 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.150.390 1316 1375 2.7E-28 T 12-10-2018 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.40.90 374 416 2.0E-21 T 12-10-2018 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 1.4E-18 T 12-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.1790.20 1135 1314 1.4E-59 T 12-10-2018 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 SUPERFAMILY SSF64484 16 1364 0.0 T 12-10-2018 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:2.40.50.100 948 1022 1.6E-26 T 12-10-2018 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.274.100 490 637 6.6E-33 T 12-10-2018 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:2.40.50.100 1151 1215 1.4E-59 T 12-10-2018 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:2.40.50.100 1023 1126 7.2E-29 T 12-10-2018 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 6.5E-27 T 12-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1315 4.0E-79 T 12-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_0341 5f2dd5b26b67450b5f6388b90c0d917c 1406 Gene3D G3DSA:1.10.132.30 638 790 4.3E-66 T 12-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 7.6E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 7.6E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 7.6E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 SMART SM00448 3 116 1.4E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 6.0E-20 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 Pfam PF00072 Response regulator receiver domain 6 116 1.6E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 Gene3D G3DSA:3.40.50.12740 3 208 1.2E-57 T 12-10-2018 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 SUPERFAMILY SSF46894 144 208 1.19E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 SUPERFAMILY SSF52172 2 128 6.55E-31 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 SMART SM00421 146 203 8.8E-20 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3919 0ef2f4326048d9affa002db6a39306e1 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1417 503fbd35b94d4e411b449f3906d2e3c9 393 SUPERFAMILY SSF53383 1 390 2.04E-99 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1417 503fbd35b94d4e411b449f3906d2e3c9 393 Gene3D G3DSA:3.90.1150.10 13 383 1.5E-148 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1417 503fbd35b94d4e411b449f3906d2e3c9 393 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 389 3.0E-148 T 12-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 YPK_1417 503fbd35b94d4e411b449f3906d2e3c9 393 Pfam PF00155 Aminotransferase class I and II 59 381 1.9E-33 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_1417 503fbd35b94d4e411b449f3906d2e3c9 393 Gene3D G3DSA:3.40.640.10 70 293 1.5E-148 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0978 c0833bf9070548425deca0ad169f0273 435 Pfam PF07690 Major Facilitator Superfamily 29 389 8.9E-53 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0978 c0833bf9070548425deca0ad169f0273 435 Gene3D G3DSA:1.20.1250.20 232 432 1.2E-27 T 12-10-2018 YPK_0978 c0833bf9070548425deca0ad169f0273 435 SUPERFAMILY SSF103473 14 431 8.5E-80 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0978 c0833bf9070548425deca0ad169f0273 435 Gene3D G3DSA:1.20.1250.20 14 209 1.2E-44 T 12-10-2018 YPK_3126 73966627b7180592b8169da08133cb4b 151 Pfam PF03589 Antitermination protein 23 94 2.4E-19 T 12-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 YPK_2940 216e92acad052945c4a8d0d6cfe4d069 496 Gene3D G3DSA:3.40.50.300 245 489 4.0E-49 T 12-10-2018 YPK_2940 216e92acad052945c4a8d0d6cfe4d069 496 Pfam PF00005 ABC transporter 24 163 4.3E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2940 216e92acad052945c4a8d0d6cfe4d069 496 SMART SM00382 28 238 5.3E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2940 216e92acad052945c4a8d0d6cfe4d069 496 SMART SM00382 285 479 3.7E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2940 216e92acad052945c4a8d0d6cfe4d069 496 SUPERFAMILY SSF52540 24 225 1.12E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2940 216e92acad052945c4a8d0d6cfe4d069 496 SUPERFAMILY SSF52540 250 481 2.42E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2940 216e92acad052945c4a8d0d6cfe4d069 496 Pfam PF00005 ABC transporter 276 429 1.1E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2940 216e92acad052945c4a8d0d6cfe4d069 496 Gene3D G3DSA:3.40.50.300 12 221 1.3E-35 T 12-10-2018 YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 SUPERFAMILY SSF49503 3 166 4.07E-26 T 12-10-2018 IPR008972 Cupredoxin YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 Pfam PF07732 Multicopper oxidase 53 167 7.7E-26 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 Pfam PF07731 Multicopper oxidase 362 468 1.0E-13 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 469 57.518 T 12-10-2018 IPR026589 Cell division protein FtsP GO:0043093 YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 Gene3D G3DSA:2.60.40.420 166 346 1.4E-54 T 12-10-2018 IPR008972 Cupredoxin YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 Gene3D G3DSA:2.60.40.420 29 165 1.9E-31 T 12-10-2018 IPR008972 Cupredoxin YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 SUPERFAMILY SSF49503 173 296 2.93E-31 T 12-10-2018 IPR008972 Cupredoxin YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 Gene3D G3DSA:2.60.40.420 347 472 1.9E-23 T 12-10-2018 IPR008972 Cupredoxin YPK_0665 ab947faffec8bedfec8a7329ef4bfc66 474 SUPERFAMILY SSF49503 316 467 2.6E-17 T 12-10-2018 IPR008972 Cupredoxin YPK_0504 ee33c7c2b815b6057cf067134adc9524 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 7.9E-29 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 YPK_0504 ee33c7c2b815b6057cf067134adc9524 95 SUPERFAMILY SSF69754 1 95 5.36E-36 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like YPK_0504 ee33c7c2b815b6057cf067134adc9524 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 6.2E-36 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 YPK_0504 ee33c7c2b815b6057cf067134adc9524 95 Gene3D G3DSA:3.30.160.100 1 95 2.7E-39 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like YPK_2453 fad631e3c9002390045b8ad880563baf 520 TIGRFAM TIGR02310 HpaB-2: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 2 520 0.0 T 12-10-2018 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria GO:0010124|GO:0016712|GO:0050660 KEGG: 00350+1.14.14.9|MetaCyc: PWY-7431 YPK_2453 fad631e3c9002390045b8ad880563baf 520 PIRSF PIRSF500125 1 518 1.9E-272 T 12-10-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein YPK_2453 fad631e3c9002390045b8ad880563baf 520 Gene3D G3DSA:1.20.140.10 288 478 6.0E-64 T 12-10-2018 YPK_2453 fad631e3c9002390045b8ad880563baf 520 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 15 280 1.2E-87 T 12-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal YPK_2453 fad631e3c9002390045b8ad880563baf 520 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 288 489 1.4E-61 T 12-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal YPK_2453 fad631e3c9002390045b8ad880563baf 520 Gene3D G3DSA:1.10.3140.10 14 151 2.2E-40 T 12-10-2018 YPK_2453 fad631e3c9002390045b8ad880563baf 520 Gene3D G3DSA:2.40.110.10 152 282 4.3E-39 T 12-10-2018 YPK_2453 fad631e3c9002390045b8ad880563baf 520 SUPERFAMILY SSF56645 13 282 3.66E-78 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 YPK_2453 fad631e3c9002390045b8ad880563baf 520 PIRSF PIRSF000331 11 501 6.7E-189 T 12-10-2018 IPR004925 HpaB/PvcC/4-BUDH YPK_2453 fad631e3c9002390045b8ad880563baf 520 SUPERFAMILY SSF47203 272 493 5.44E-42 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 YPK_3326 41d8782fb50ec969473b798e995aa09c 248 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3326 41d8782fb50ec969473b798e995aa09c 248 SMART SM00382 28 215 4.1E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3326 41d8782fb50ec969473b798e995aa09c 248 SUPERFAMILY SSF52540 3 236 1.03E-77 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3326 41d8782fb50ec969473b798e995aa09c 248 Pfam PF00005 ABC transporter 19 167 3.3E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3326 41d8782fb50ec969473b798e995aa09c 248 Gene3D G3DSA:3.40.50.300 2 247 1.1E-76 T 12-10-2018 YPK_3326 41d8782fb50ec969473b798e995aa09c 248 PIRSF PIRSF039085 1 243 7.0E-111 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YPK_0315 17b705669bc16a01b0d691933045135d 315 Gene3D G3DSA:3.10.25.10 210 315 1.5E-40 T 12-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_0315 17b705669bc16a01b0d691933045135d 315 Pfam PF00551 Formyl transferase 6 181 3.3E-50 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_0315 17b705669bc16a01b0d691933045135d 315 Pfam PF02911 Formyl transferase, C-terminal domain 207 304 1.8E-31 T 12-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_0315 17b705669bc16a01b0d691933045135d 315 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 311 1.1E-111 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 YPK_0315 17b705669bc16a01b0d691933045135d 315 SUPERFAMILY SSF53328 5 207 2.62E-65 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_0315 17b705669bc16a01b0d691933045135d 315 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 36.621 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 YPK_0315 17b705669bc16a01b0d691933045135d 315 Gene3D G3DSA:3.40.50.170 1 209 4.8E-88 T 12-10-2018 YPK_0315 17b705669bc16a01b0d691933045135d 315 SUPERFAMILY SSF50486 208 309 1.88E-36 T 12-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 YPK_0315 17b705669bc16a01b0d691933045135d 315 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_2496 983fa8fef9598a6fda3cfb91ac639749 330 Gene3D G3DSA:3.40.190.170 33 330 1.2E-112 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily YPK_2496 983fa8fef9598a6fda3cfb91ac639749 330 PIRSF PIRSF006470 5 330 2.8E-97 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 YPK_2496 983fa8fef9598a6fda3cfb91ac639749 330 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 315 7.6E-71 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 YPK_2496 983fa8fef9598a6fda3cfb91ac639749 330 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 39 291 8.4E-63 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 YPK_2759 ebbeb5eb1c9591a7fa538005ee1daaca 158 Gene3D G3DSA:2.60.40.3590 44 158 1.4E-56 T 12-10-2018 YPK_3692 f0618f17e85c9e88518e0f4ffbd1f34f 104 PIRSF PIRSF000368 1 104 1.8E-33 T 12-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 YPK_3692 f0618f17e85c9e88518e0f4ffbd1f34f 104 Pfam PF13353 4Fe-4S single cluster domain 1 101 2.2E-30 T 12-10-2018 YPK_3881 9ff2065f652337578ec23a3e533f8915 359 PIRSF PIRSF020979 1 359 6.8E-197 T 12-10-2018 IPR011215 Phosphoribosyl transferase YPK_3881 9ff2065f652337578ec23a3e533f8915 359 Pfam PF11202 Phosphoribosyl transferase (PRTase) 9 248 6.7E-90 T 12-10-2018 IPR011215 Phosphoribosyl transferase YPK_3881 9ff2065f652337578ec23a3e533f8915 359 Pfam PF15608 PELOTA RNA binding domain 276 357 7.1E-29 T 12-10-2018 IPR028157 PELOTA RNA-binding domain YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 Pfam PF01225 Mur ligase family, catalytic domain 2 98 1.6E-18 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 Gene3D G3DSA:3.90.190.20 314 451 1.4E-29 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 Gene3D G3DSA:3.40.1190.10 91 313 3.0E-51 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 Gene3D G3DSA:3.40.50.720 1 90 5.3E-35 T 12-10-2018 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 SUPERFAMILY SSF51984 1 90 3.79E-23 T 12-10-2018 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 SUPERFAMILY SSF53244 312 449 9.03E-36 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 3.3E-258 T 12-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 Pfam PF08245 Mur ligase middle domain 108 291 1.2E-18 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 SUPERFAMILY SSF53623 95 308 1.83E-48 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 58.928 T 12-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 YPK_3765 4c66eefbd31be4654f1804e2a288390f 461 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 360 6.9E-9 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YPK_1506 1d657533b7d20aa0204a45152be9c0a0 421 SUPERFAMILY SSF56935 26 421 3.57E-105 T 12-10-2018 YPK_1506 1d657533b7d20aa0204a45152be9c0a0 421 Gene3D G3DSA:2.40.160.60 26 421 3.6E-142 T 12-10-2018 YPK_1506 1d657533b7d20aa0204a45152be9c0a0 421 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 421 4.3E-138 T 12-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 1.1E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 1.1E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 Gene3D G3DSA:3.30.565.10 205 353 7.6E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 Gene3D G3DSA:1.10.287.130 87 197 1.7E-17 T 12-10-2018 YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 SMART SM00388 136 196 4.7E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 350 1.5E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 SMART SM00387 242 351 4.3E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 SUPERFAMILY SSF55874 186 349 1.7E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 SUPERFAMILY SSF47384 121 194 7.85E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_3742 da4cd3168489fc3ee9c8ed1ea342a1cc 355 Pfam PF00512 His Kinase A (phospho-acceptor) domain 138 195 5.5E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 Gene3D G3DSA:3.90.1150.10 11 391 1.9E-155 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 SUPERFAMILY SSF53383 1 389 6.04E-116 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 Gene3D G3DSA:3.40.640.10 60 301 1.9E-155 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 Pfam PF00155 Aminotransferase class I and II 27 392 5.3E-79 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 PRINTS PR00799 Aspartate aminotransferase signature 176 195 1.7E-36 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 PRINTS PR00799 Aspartate aminotransferase signature 274 299 1.7E-36 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 PRINTS PR00799 Aspartate aminotransferase signature 342 360 1.7E-36 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YPK_3853 b73a71d6e2ffef67df302c6b0a629143 397 PRINTS PR00799 Aspartate aminotransferase signature 207 219 1.7E-36 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YPK_1978 3bf5c832a71c6623393128a38a49bb2b 81 Pfam PF06649 Protein of unknown function (DUF1161) 23 76 3.5E-27 T 12-10-2018 IPR010595 Protein of unknown function DUF1161 YPK_1978 3bf5c832a71c6623393128a38a49bb2b 81 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 3 76 4.0E-17 T 12-10-2018 IPR010595 Protein of unknown function DUF1161 YPK_1787 af50cfb452c11a16708204990edd2fef 259 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 182 251 3.8E-16 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_1787 af50cfb452c11a16708204990edd2fef 259 SUPERFAMILY SSF49584 154 254 2.09E-18 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_1787 af50cfb452c11a16708204990edd2fef 259 Gene3D G3DSA:2.60.40.10 38 161 8.5E-42 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1787 af50cfb452c11a16708204990edd2fef 259 SUPERFAMILY SSF49354 32 160 4.71E-40 T 12-10-2018 IPR008962 PapD-like superfamily YPK_1787 af50cfb452c11a16708204990edd2fef 259 Gene3D G3DSA:2.60.40.10 165 259 6.6E-20 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_1787 af50cfb452c11a16708204990edd2fef 259 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 37 160 1.8E-43 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_1787 af50cfb452c11a16708204990edd2fef 259 PRINTS PR00969 Pili chaperone signature 177 192 2.2E-32 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1787 af50cfb452c11a16708204990edd2fef 259 PRINTS PR00969 Pili chaperone signature 114 131 2.2E-32 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1787 af50cfb452c11a16708204990edd2fef 259 PRINTS PR00969 Pili chaperone signature 142 157 2.2E-32 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1787 af50cfb452c11a16708204990edd2fef 259 PRINTS PR00969 Pili chaperone signature 37 46 2.2E-32 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_1787 af50cfb452c11a16708204990edd2fef 259 PRINTS PR00969 Pili chaperone signature 86 107 2.2E-32 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0385 6a84c2f5ceeb9e506023cf38e7834dd4 172 Gene3D G3DSA:2.30.110.20 2 172 1.4E-67 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_0385 6a84c2f5ceeb9e506023cf38e7834dd4 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 2.1E-64 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_0385 6a84c2f5ceeb9e506023cf38e7834dd4 172 SUPERFAMILY SSF141452 3 168 1.57E-39 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_0385 6a84c2f5ceeb9e506023cf38e7834dd4 172 Pfam PF05638 Type VI secretion system effector, Hcp 7 155 2.0E-32 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_3565 0b587fb496eee60a7a7cbce4ebd9bfc2 186 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 13 163 5.5E-55 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_3565 0b587fb496eee60a7a7cbce4ebd9bfc2 186 PIRSF PIRSF028301 2 177 6.1E-63 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_3565 0b587fb496eee60a7a7cbce4ebd9bfc2 186 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 165 4.0E-55 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 Gene3D G3DSA:3.90.930.1 68 226 5.3E-9 T 12-10-2018 YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 Gene3D G3DSA:2.180.10.10 441 573 4.6E-30 T 12-10-2018 YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 Pfam PF03527 RHS protein 470 503 4.4E-11 T 12-10-2018 IPR001826 RHS protein YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 16 56 2.0E-10 T 12-10-2018 IPR006530 YD repeat YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 265 290 9.6E-4 T 12-10-2018 IPR006530 YD repeat YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 58 94 1.2E-7 T 12-10-2018 IPR006530 YD repeat YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 335 371 2.7E-8 T 12-10-2018 IPR006530 YD repeat YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 PRINTS PR00394 RHS protein signature 464 484 5.1E-15 T 12-10-2018 IPR001826 RHS protein YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 PRINTS PR00394 RHS protein signature 518 538 5.1E-15 T 12-10-2018 IPR001826 RHS protein YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 PRINTS PR00394 RHS protein signature 541 560 5.1E-15 T 12-10-2018 IPR001826 RHS protein YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 498 573 1.6E-25 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YPK_0770 64de606e4b80fc40d6fb3cd332d3682c 693 Pfam PF05593 RHS Repeat 244 280 4.4E-6 T 12-10-2018 IPR031325 RHS repeat YPK_4076 2d2b73e35bb5173731c4db42d347d5a1 211 Gene3D G3DSA:1.10.357.10 53 210 1.7E-42 T 12-10-2018 YPK_4076 2d2b73e35bb5173731c4db42d347d5a1 211 Hamap MF_01190 HTH-type transcriptional repressor FabR [fabR]. 1 209 52.821 T 12-10-2018 IPR023764 Transcriptional repressor HTH, FabR YPK_4076 2d2b73e35bb5173731c4db42d347d5a1 211 SUPERFAMILY SSF46689 3 77 2.32E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_4076 2d2b73e35bb5173731c4db42d347d5a1 211 Gene3D G3DSA:1.10.10.60 2 52 1.8E-22 T 12-10-2018 YPK_4076 2d2b73e35bb5173731c4db42d347d5a1 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 58 2.4E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_3332 90b6e687ed1182c0eca44b9f4dce847f 465 Pfam PF01425 Amidase 28 445 1.1E-95 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 YPK_3332 90b6e687ed1182c0eca44b9f4dce847f 465 Gene3D G3DSA:3.90.1300.10 4 460 1.6E-125 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 YPK_3332 90b6e687ed1182c0eca44b9f4dce847f 465 SUPERFAMILY SSF75304 5 454 4.45E-128 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 YPK_3332 90b6e687ed1182c0eca44b9f4dce847f 465 TIGRFAM TIGR02715 amido_AtzE: amidohydrolase, AtzE family 9 459 8.2E-239 T 12-10-2018 IPR014087 Amidohydrolase, AtzE type KEGG: 00791+3.5.1.84|MetaCyc: PWY-5169 YPK_2010 eb05b992416756349c80015060e793bb 364 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 19 359 8.7E-140 T 12-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 YPK_2010 eb05b992416756349c80015060e793bb 364 Pfam PF03116 NQR2, RnfD, RnfE family 16 358 3.6E-108 T 12-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 YPK_2010 eb05b992416756349c80015060e793bb 364 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 14 360 28.285 T 12-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 YPK_3391 e6e271ca2a3800002361ffc760e3f95d 236 Hamap MF_00940 Tat proofreading chaperone DmsD [dmsD]. 21 236 43.605 T 12-10-2018 IPR028611 Tat proofreading chaperone DmsD GO:0005048 YPK_3391 e6e271ca2a3800002361ffc760e3f95d 236 PIRSF PIRSF004690 19 236 4.0E-62 T 12-10-2018 IPR026269 Tat proofreading chaperone DmsD-type YPK_3391 e6e271ca2a3800002361ffc760e3f95d 236 Gene3D G3DSA:1.10.3480.10 21 236 4.6E-48 T 12-10-2018 YPK_3391 e6e271ca2a3800002361ffc760e3f95d 236 SUPERFAMILY SSF89155 20 235 5.89E-50 T 12-10-2018 IPR036411 TorD-like superfamily YPK_3391 e6e271ca2a3800002361ffc760e3f95d 236 Pfam PF02613 Nitrate reductase delta subunit 89 191 8.2E-19 T 12-10-2018 IPR020945 DMSO/Nitrate reductase chaperone YPK_2032 29669d9323916383dd3b788b36c3472c 324 Gene3D G3DSA:1.10.10.10 1 86 1.1E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2032 29669d9323916383dd3b788b36c3472c 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2032 29669d9323916383dd3b788b36c3472c 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2032 29669d9323916383dd3b788b36c3472c 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2032 29669d9323916383dd3b788b36c3472c 324 Gene3D G3DSA:3.40.190.10 92 303 1.1E-99 T 12-10-2018 YPK_2032 29669d9323916383dd3b788b36c3472c 324 Gene3D G3DSA:3.40.190.10 167 267 1.1E-99 T 12-10-2018 YPK_2032 29669d9323916383dd3b788b36c3472c 324 SUPERFAMILY SSF53850 91 322 2.27E-43 T 12-10-2018 YPK_2032 29669d9323916383dd3b788b36c3472c 324 SUPERFAMILY SSF46785 1 85 7.39E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2032 29669d9323916383dd3b788b36c3472c 324 Pfam PF03466 LysR substrate binding domain 92 288 1.7E-40 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2032 29669d9323916383dd3b788b36c3472c 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 1.4E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2388 e5c6e8288215a49c165596dc1e84e010 158 Pfam PF02661 Fic/DOC family 10 93 1.4E-9 T 12-10-2018 IPR003812 Fido domain YPK_2388 e5c6e8288215a49c165596dc1e84e010 158 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 10 130 2.9E-48 T 12-10-2018 IPR006440 Death on curing protein GO:0016301 YPK_2388 e5c6e8288215a49c165596dc1e84e010 158 Gene3D G3DSA:1.20.120.1870 8 138 4.6E-26 T 12-10-2018 YPK_3770 c332cb7528967d202c302a4238848fcf 578 Gene3D G3DSA:3.10.20.310 102 189 4.8E-30 T 12-10-2018 YPK_3770 c332cb7528967d202c302a4238848fcf 578 Pfam PF07244 Surface antigen variable number repeat 190 251 3.1E-7 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 YPK_3770 c332cb7528967d202c302a4238848fcf 578 Pfam PF01103 Surface antigen 341 575 4.8E-31 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 YPK_3770 c332cb7528967d202c302a4238848fcf 578 Pfam PF17243 POTRA domain TamA domain 1 26 100 2.4E-20 T 12-10-2018 IPR035243 TamA, POTRA domain 1 YPK_3770 c332cb7528967d202c302a4238848fcf 578 Gene3D G3DSA:3.10.20.310 190 266 2.8E-25 T 12-10-2018 YPK_3770 c332cb7528967d202c302a4238848fcf 578 Gene3D G3DSA:3.10.20.310 21 101 5.4E-31 T 12-10-2018 YPK_3770 c332cb7528967d202c302a4238848fcf 578 Gene3D G3DSA:2.40.160.50 267 578 6.6E-121 T 12-10-2018 YPK_2852 77a1f259386ae9fee12a5e76d02889c0 397 SMART SM00852 5 172 1.0E-32 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_2852 77a1f259386ae9fee12a5e76d02889c0 397 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 165 3.0E-31 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_2852 77a1f259386ae9fee12a5e76d02889c0 397 Gene3D G3DSA:3.40.980.10 1 172 4.9E-47 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily YPK_2852 77a1f259386ae9fee12a5e76d02889c0 397 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 397 113.852 T 12-10-2018 IPR008135 Competence-induced protein CinA YPK_2852 77a1f259386ae9fee12a5e76d02889c0 397 Pfam PF00994 Probable molybdopterin binding domain 6 170 1.5E-31 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_2852 77a1f259386ae9fee12a5e76d02889c0 397 SUPERFAMILY SSF53218 1 203 5.89E-37 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily YPK_2852 77a1f259386ae9fee12a5e76d02889c0 397 PIRSF PIRSF006728 1 385 3.9E-113 T 12-10-2018 IPR008135 Competence-induced protein CinA YPK_2852 77a1f259386ae9fee12a5e76d02889c0 397 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 396 4.5E-117 T 12-10-2018 IPR008135 Competence-induced protein CinA YPK_1063 02bfd66cca228252532f2d221f2c9105 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 58.625 T 12-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 YPK_1063 02bfd66cca228252532f2d221f2c9105 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 7.4E-12 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_1063 02bfd66cca228252532f2d221f2c9105 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 166 5.5E-4 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_1063 02bfd66cca228252532f2d221f2c9105 274 SUPERFAMILY SSF51161 1 256 8.18E-80 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily YPK_1063 02bfd66cca228252532f2d221f2c9105 274 Gene3D G3DSA:2.160.10.10 87 257 1.3E-57 T 12-10-2018 YPK_1063 02bfd66cca228252532f2d221f2c9105 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 5.9E-25 T 12-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 YPK_1063 02bfd66cca228252532f2d221f2c9105 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_1063 02bfd66cca228252532f2d221f2c9105 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 273 1.8E-159 T 12-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 YPK_1063 02bfd66cca228252532f2d221f2c9105 274 Gene3D G3DSA:1.10.166.10 1 70 1.7E-34 T 12-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 YPK_2377 140835f6e2cea25b6479c1690e8e18ba 339 Hamap MF_01045 D-cysteine desulfhydrase [dcyD]. 11 339 64.069 T 12-10-2018 IPR023702 D-cysteine desulphhydrase, bacterial GO:0019148 KEGG: 00270+4.4.1.15 YPK_2377 140835f6e2cea25b6479c1690e8e18ba 339 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 327 2.6E-51 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_2377 140835f6e2cea25b6479c1690e8e18ba 339 Gene3D G3DSA:3.40.50.1100 60 168 1.2E-121 T 12-10-2018 YPK_2377 140835f6e2cea25b6479c1690e8e18ba 339 PIRSF PIRSF006278 8 339 1.4E-94 T 12-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase YPK_2377 140835f6e2cea25b6479c1690e8e18ba 339 SUPERFAMILY SSF53686 17 337 3.8E-85 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_2377 140835f6e2cea25b6479c1690e8e18ba 339 Gene3D G3DSA:3.40.50.1100 28 333 1.2E-121 T 12-10-2018 YPK_2377 140835f6e2cea25b6479c1690e8e18ba 339 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 22 339 3.2E-126 T 12-10-2018 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 Gene3D G3DSA:3.40.190.10 31 337 6.9E-142 T 12-10-2018 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 Gene3D G3DSA:3.40.190.10 135 363 6.9E-142 T 12-10-2018 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PIRSF PIRSF019574 1 369 4.4E-142 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 218 237 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 268 287 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 157 171 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 313 339 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 93 106 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 180 199 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 50 71 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 77 91 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 142 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 34 50 2.3E-75 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 Pfam PF13416 Bacterial extracellular solute-binding protein 46 334 1.7E-32 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_2730 fe686d400499aa0d8655e7f2650be2ce 369 SUPERFAMILY SSF53850 29 368 3.51E-102 T 12-10-2018 YPK_0390 2994e4e33646fd8bf6c36edc689a87f6 356 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 32 342 4.4E-99 T 12-10-2018 IPR010732 Type VI secretion, TssG-like YPK_0390 2994e4e33646fd8bf6c36edc689a87f6 356 Pfam PF06996 Type VI secretion, TssG 32 342 2.3E-91 T 12-10-2018 IPR010732 Type VI secretion, TssG-like YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 Gene3D G3DSA:3.40.50.300 337 587 4.9E-69 T 12-10-2018 YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 556 7.3E-207 T 12-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 Pfam PF00005 ABC transporter 369 514 3.9E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 SUPERFAMILY SSF52540 363 582 2.08E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 Gene3D G3DSA:1.20.1560.10 2 334 1.5E-48 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 SMART SM00382 375 560 2.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 SUPERFAMILY SSF90123 11 329 4.45E-54 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_2688 2ca7c5a25f7026777460de0a2bca74e7 588 Pfam PF00664 ABC transporter transmembrane region 26 291 5.2E-38 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_3419 e63452ccd329647784792605ca107254 362 Pfam PF02733 Dak1 domain 47 354 4.9E-111 T 12-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 YPK_3419 e63452ccd329647784792605ca107254 362 Gene3D G3DSA:3.30.1180.20 214 358 5.2E-48 T 12-10-2018 YPK_3419 e63452ccd329647784792605ca107254 362 SUPERFAMILY SSF82549 40 358 7.85E-112 T 12-10-2018 YPK_3419 e63452ccd329647784792605ca107254 362 Gene3D G3DSA:3.40.50.10440 41 213 6.8E-52 T 12-10-2018 YPK_0130 93c9fe07eb3210ea53b1bb06ba7a3628 335 Pfam PF00294 pfkB family carbohydrate kinase 29 319 6.2E-34 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_0130 93c9fe07eb3210ea53b1bb06ba7a3628 335 Gene3D G3DSA:3.40.1190.20 2 334 1.7E-53 T 12-10-2018 IPR029056 Ribokinase-like YPK_0130 93c9fe07eb3210ea53b1bb06ba7a3628 335 SUPERFAMILY SSF53613 6 328 6.24E-53 T 12-10-2018 IPR029056 Ribokinase-like YPK_3654 288c0c38bc909cce89b3bb3516fd160e 291 SMART SM01133 51 259 1.5E-30 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_3654 288c0c38bc909cce89b3bb3516fd160e 291 SUPERFAMILY SSF51569 35 274 2.49E-63 T 12-10-2018 YPK_3654 288c0c38bc909cce89b3bb3516fd160e 291 Hamap MF_02052 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [lsrF]. 1 291 75.464 T 12-10-2018 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase GO:0016747 YPK_3654 288c0c38bc909cce89b3bb3516fd160e 291 PIRSF PIRSF038992 31 288 1.2E-79 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_3654 288c0c38bc909cce89b3bb3516fd160e 291 Gene3D G3DSA:3.20.20.70 1 291 1.9E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3654 288c0c38bc909cce89b3bb3516fd160e 291 Pfam PF01791 DeoC/LacD family aldolase 51 258 6.2E-19 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_0909 d7fcc984054f8de2b6fbda6cc7eb4bd3 88 Pfam PF10963 Phage tail assembly chaperone 7 88 1.2E-32 T 12-10-2018 IPR024406 Phage tail assembly chaperone TAC-10 YPK_0909 d7fcc984054f8de2b6fbda6cc7eb4bd3 88 ProDom PD068655 ORF26 3'REGION LYS GENE PRECURSOR ORF30 SIGNAL PHAGE 7 87 3.0E-26 T 12-10-2018 IPR024406 Phage tail assembly chaperone TAC-10 YPK_0501 61dd9be5242ae58664770b4e9256ac00 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 5.7E-22 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_0501 61dd9be5242ae58664770b4e9256ac00 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPK_0501 61dd9be5242ae58664770b4e9256ac00 90 Gene3D G3DSA:3.30.1340.10 1 85 5.1E-31 T 12-10-2018 IPR035895 HPr-like superfamily YPK_0501 61dd9be5242ae58664770b4e9256ac00 90 SUPERFAMILY SSF55594 4 90 1.02E-23 T 12-10-2018 IPR035895 HPr-like superfamily YPK_0501 61dd9be5242ae58664770b4e9256ac00 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 5.2E-21 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_0501 61dd9be5242ae58664770b4e9256ac00 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 5.9E-10 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_0501 61dd9be5242ae58664770b4e9256ac00 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 5.9E-10 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_0501 61dd9be5242ae58664770b4e9256ac00 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 5.9E-10 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Gene3D G3DSA:1.20.120.1510 450 561 1.0E-30 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 SUPERFAMILY SSF81301 526 813 1.01E-87 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 27 945 19.763 T 12-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Gene3D G3DSA:1.20.120.330 285 440 6.1E-58 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Gene3D G3DSA:3.30.460.10 112 284 3.9E-67 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Gene3D G3DSA:1.10.4050.10 1 110 1.1E-31 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 SUPERFAMILY SSF81593 287 436 5.49E-45 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Gene3D G3DSA:3.30.460.100 562 811 1.4E-98 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 SUPERFAMILY SSF81301 10 286 1.63E-93 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 SUPERFAMILY SSF81593 815 943 7.53E-34 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Gene3D G3DSA:1.20.120.330 812 946 4.3E-47 T 12-10-2018 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 34 276 1.5E-95 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 553 805 3.0E-98 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Pfam PF08335 GlnD PII-uridylyltransferase 297 436 5.9E-48 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 YPK_0644 647cd0c487eb415ee3f13dcb51cc7e82 951 Pfam PF08335 GlnD PII-uridylyltransferase 825 919 2.1E-10 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 YPK_3625 f72953eaa3ee31116a9f2168ebd3afb4 407 PIRSF PIRSF001491 1 407 3.3E-167 T 12-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YPK_3625 f72953eaa3ee31116a9f2168ebd3afb4 407 Gene3D G3DSA:3.40.720.10 3 406 4.1E-157 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_3625 f72953eaa3ee31116a9f2168ebd3afb4 407 SUPERFAMILY SSF53649 1 407 1.31E-74 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_3625 f72953eaa3ee31116a9f2168ebd3afb4 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 404 5.1E-196 T 12-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YPK_3625 f72953eaa3ee31116a9f2168ebd3afb4 407 Gene3D G3DSA:3.30.70.1250 115 238 4.1E-157 T 12-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YPK_3625 f72953eaa3ee31116a9f2168ebd3afb4 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 407 56.299 T 12-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YPK_3625 f72953eaa3ee31116a9f2168ebd3afb4 407 SUPERFAMILY SSF143856 117 235 2.09E-50 T 12-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 YPK_3625 f72953eaa3ee31116a9f2168ebd3afb4 407 Pfam PF01676 Metalloenzyme superfamily 2 398 2.3E-44 T 12-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 YPK_2861 4de5edd6c820991386964aab8bf05bde 444 Gene3D G3DSA:1.20.1740.10 2 441 9.3E-74 T 12-10-2018 YPK_2861 4de5edd6c820991386964aab8bf05bde 444 PIRSF PIRSF006060 1 431 7.1E-62 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2861 4de5edd6c820991386964aab8bf05bde 444 Pfam PF13520 Amino acid permease 10 401 1.9E-48 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 Gene3D G3DSA:1.20.58.90 532 604 7.7E-27 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 320 535 5.5E-74 T 12-10-2018 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 MetaCyc: PWY-7511 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 Gene3D G3DSA:3.80.10.10 19 306 2.8E-60 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 Pfam PF12468 Type III secretion system leucine rich repeat protein 1 48 5.1E-15 T 12-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SUPERFAMILY SSF52058 57 291 1.19E-26 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 Gene3D G3DSA:1.20.1270.130 311 392 3.5E-28 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 Gene3D G3DSA:1.20.58.360 393 531 6.3E-48 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 243 262 0.24 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 97 116 0.02 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 160 179 24.0 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 73 95 160.0 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 139 158 480.0 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 201 220 0.36 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 180 199 6.3E-4 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 222 241 2.5 T 12-10-2018 YPK_0746 067a3a20b66592f63ca1f2c40cdfe2f7 615 SMART SM00364 118 137 0.53 T 12-10-2018 YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 SUPERFAMILY SSF53822 30 408 1.3E-89 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 6.5E-7 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 6.5E-7 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 94 104 6.5E-7 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 6.5E-7 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 Gene3D G3DSA:3.40.50.2300 33 375 4.9E-139 T 12-10-2018 YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 Gene3D G3DSA:3.40.50.2300 146 395 4.9E-139 T 12-10-2018 YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 Pfam PF13433 Periplasmic binding protein domain 31 406 1.1E-170 T 12-10-2018 YPK_2873 10be45516879d1bf08bd839e4703c8d5 422 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 2.7E-177 T 12-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 Gene3D G3DSA:3.30.1920.30 325 388 1.1E-93 T 12-10-2018 YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 SUPERFAMILY SSF69255 466 553 6.02E-34 T 12-10-2018 YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 Gene3D G3DSA:2.30.110.50 126 431 1.1E-93 T 12-10-2018 YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 SUPERFAMILY SSF69279 293 467 7.82E-42 T 12-10-2018 YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 Pfam PF05954 Phage late control gene D protein (GPD) 134 431 4.0E-83 T 12-10-2018 YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 SUPERFAMILY SSF69349 544 732 1.88E-41 T 12-10-2018 YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 126 605 3.0E-192 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 Gene3D G3DSA:3.55.50.10 202 293 1.1E-93 T 12-10-2018 YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 SUPERFAMILY SSF69279 114 289 3.61E-56 T 12-10-2018 YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 Gene3D G3DSA:2.40.50.230 459 559 2.2E-42 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_0401 05a4f712b749a10e489ac858e76cc1bf 740 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 114 622 7.2E-202 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_2598 9dfcb959965487b3c5adb3292059d54b 188 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 1 177 1.4E-71 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_2826 74dbf3d4031d85a9f27a3d4181a8460d 434 SUPERFAMILY SSF142764 5 431 4.32E-122 T 12-10-2018 YPK_2826 74dbf3d4031d85a9f27a3d4181a8460d 434 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 269 426 3.0E-40 T 12-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain YPK_2826 74dbf3d4031d85a9f27a3d4181a8460d 434 Gene3D G3DSA:3.40.980.20 257 433 2.0E-57 T 12-10-2018 YPK_2826 74dbf3d4031d85a9f27a3d4181a8460d 434 Pfam PF07005 Putative sugar-binding N-terminal domain 5 233 9.2E-65 T 12-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain YPK_2826 74dbf3d4031d85a9f27a3d4181a8460d 434 Gene3D G3DSA:3.40.50.10840 3 240 1.5E-78 T 12-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily YPK_0781 16743f079dba07c7efb707f81be480f8 474 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 40 465 1.2E-107 T 12-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 YPK_0781 16743f079dba07c7efb707f81be480f8 474 Gene3D G3DSA:1.20.1250.20 248 455 2.6E-10 T 12-10-2018 YPK_0781 16743f079dba07c7efb707f81be480f8 474 Pfam PF13347 MFS/sugar transport protein 41 452 2.5E-76 T 12-10-2018 YPK_0781 16743f079dba07c7efb707f81be480f8 474 SUPERFAMILY SSF103473 34 450 3.4E-27 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0781 16743f079dba07c7efb707f81be480f8 474 Gene3D G3DSA:1.20.1250.20 33 231 1.3E-10 T 12-10-2018 YPK_1086 6225b3090af3c6c842f91ce5c954307d 86 Gene3D G3DSA:2.30.30.400 10 86 3.0E-32 T 12-10-2018 IPR038626 Rof-like superfamily YPK_1086 6225b3090af3c6c842f91ce5c954307d 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 2.2E-28 T 12-10-2018 IPR009778 Modulator of Rho-dependent transcription termination YPK_1086 6225b3090af3c6c842f91ce5c954307d 86 SUPERFAMILY SSF101744 1 84 1.67E-30 T 12-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 Gene3D G3DSA:3.20.20.80 1 477 1.5E-163 T 12-10-2018 YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 Pfam PF00232 Glycosyl hydrolase family 1 4 475 6.2E-128 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 393 404 1.0E-16 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 415 432 1.0E-16 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 440 452 1.0E-16 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 306 320 1.0E-16 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 372 380 1.0E-16 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 372 380 - T 12-10-2018 IPR018120 Glycoside hydrolase family 1, active site YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 SUPERFAMILY SSF51445 2 471 2.05E-160 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_2805 a74fc7c873f3ee79ed6daf78115e2870 478 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 12-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site YPK_0042 24f02231c8d7dbe06f815dfef19e0f8e 462 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 462 246.813 T 12-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 YPK_0042 24f02231c8d7dbe06f815dfef19e0f8e 462 SUPERFAMILY SSF53383 72 347 1.1E-43 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0042 24f02231c8d7dbe06f815dfef19e0f8e 462 Gene3D G3DSA:3.40.640.10 94 358 3.6E-154 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0042 24f02231c8d7dbe06f815dfef19e0f8e 462 Pfam PF03841 L-seryl-tRNA selenium transferase 82 450 1.7E-170 T 12-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 YPK_0042 24f02231c8d7dbe06f815dfef19e0f8e 462 Gene3D G3DSA:3.90.1150.110 11 452 3.6E-154 T 12-10-2018 YPK_0042 24f02231c8d7dbe06f815dfef19e0f8e 462 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 9 459 1.3E-185 T 12-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 YPK_0042 24f02231c8d7dbe06f815dfef19e0f8e 462 Pfam PF12390 Selenocysteine synthase N terminal 9 48 2.6E-9 T 12-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 20 436 30.639 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 190 324 3.4E-48 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 SUPERFAMILY SSF69742 19 176 5.62E-48 T 12-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 338 434 3.4E-23 T 12-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 PIRSF PIRSF000445 19 438 1.5E-154 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 Gene3D G3DSA:3.30.460.30 19 176 4.8E-59 T 12-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 Gene3D G3DSA:3.40.50.720 179 331 3.5E-44 T 12-10-2018 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 22 435 7.0E-158 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 SUPERFAMILY SSF51735 180 333 5.39E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 24 174 1.5E-49 T 12-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 SUPERFAMILY SSF69075 335 436 1.09E-27 T 12-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2180 7fdadb2499821415f5e8e4e3603c8ff4 438 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 117 140 - T 12-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 YPK_2563 1b4ccec652c3f6cdd102bd4af9f23a9c 245 PIRSF PIRSF005011 1 245 1.4E-149 T 12-10-2018 IPR023604 Uncharacterised protein family SanA YPK_2563 1b4ccec652c3f6cdd102bd4af9f23a9c 245 Pfam PF02698 DUF218 domain 48 170 1.1E-17 T 12-10-2018 IPR003848 Domain of unknown function DUF218 YPK_1811 7f081ae0fc486be3fecf9e001d8734be 291 Gene3D G3DSA:3.30.200.20 1 92 1.7E-20 T 12-10-2018 YPK_1811 7f081ae0fc486be3fecf9e001d8734be 291 Pfam PF03881 Fructosamine kinase 1 285 3.0E-116 T 12-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 YPK_1811 7f081ae0fc486be3fecf9e001d8734be 291 SUPERFAMILY SSF56112 4 279 3.2E-38 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily YPK_1811 7f081ae0fc486be3fecf9e001d8734be 291 Gene3D G3DSA:3.90.1200.10 98 286 2.3E-56 T 12-10-2018 YPK_1811 7f081ae0fc486be3fecf9e001d8734be 291 PIRSF PIRSF006221 1 287 6.1E-91 T 12-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 YPK_1675 15b533bbb0a308c93b0eba18c88e0fbb 348 PIRSF PIRSF001237 4 348 1.1E-139 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_1675 15b533bbb0a308c93b0eba18c88e0fbb 348 Pfam PF01979 Amidohydrolase family 15 307 2.8E-18 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YPK_1675 15b533bbb0a308c93b0eba18c88e0fbb 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_1675 15b533bbb0a308c93b0eba18c88e0fbb 348 SUPERFAMILY SSF51556 6 347 1.72E-144 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_1675 15b533bbb0a308c93b0eba18c88e0fbb 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 5.7E-149 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_1675 15b533bbb0a308c93b0eba18c88e0fbb 348 Gene3D G3DSA:3.20.20.140 6 348 8.9E-104 T 12-10-2018 YPK_1675 15b533bbb0a308c93b0eba18c88e0fbb 348 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 46.694 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3433 6d4cb754275994ea8dede80990d14cf7 105 Pfam PF12084 Protein of unknown function (DUF3561) 1 104 1.3E-47 T 12-10-2018 IPR022721 Protein of unknown function DUF3561 YPK_3433 6d4cb754275994ea8dede80990d14cf7 105 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 1 105 1.0E-54 T 12-10-2018 IPR022721 Protein of unknown function DUF3561 YPK_0467 0dc480732a47a4358e2da933e8dfe827 162 Pfam PF04093 rod shape-determining protein MreD 7 154 1.2E-43 T 12-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 YPK_0467 0dc480732a47a4358e2da933e8dfe827 162 PIRSF PIRSF018472 2 162 1.2E-57 T 12-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type YPK_0467 0dc480732a47a4358e2da933e8dfe827 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 154 7.5E-43 T 12-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 YPK_2049 424ec19783125ae76f0b824df61ce801 211 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 203 211 - T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2049 424ec19783125ae76f0b824df61ce801 211 SUPERFAMILY SSF56925 23 211 3.4E-29 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_2049 424ec19783125ae76f0b824df61ce801 211 Gene3D G3DSA:2.40.160.20 22 211 9.3E-77 T 12-10-2018 YPK_2049 424ec19783125ae76f0b824df61ce801 211 Pfam PF03922 OmpW family 23 211 2.4E-65 T 12-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 YPK_4115 17b0be28a137300dfb515938c0db90db 248 SUPERFAMILY SSF63380 3 99 8.78E-23 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_4115 17b0be28a137300dfb515938c0db90db 248 Pfam PF00970 Oxidoreductase FAD-binding domain 19 90 1.2E-7 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YPK_4115 17b0be28a137300dfb515938c0db90db 248 Gene3D G3DSA:2.40.30.10 1 96 7.7E-30 T 12-10-2018 YPK_4115 17b0be28a137300dfb515938c0db90db 248 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 5.4E-19 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YPK_4115 17b0be28a137300dfb515938c0db90db 248 Gene3D G3DSA:3.40.50.80 97 248 4.8E-41 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_4115 17b0be28a137300dfb515938c0db90db 248 SUPERFAMILY SSF52343 104 248 2.62E-38 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_0418 85ec8645a545e268b2a3a292159033e0 233 Gene3D G3DSA:3.20.20.70 1 231 1.3E-55 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0418 85ec8645a545e268b2a3a292159033e0 233 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 10 221 7.5E-46 T 12-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_0418 85ec8645a545e268b2a3a292159033e0 233 Pfam PF01791 DeoC/LacD family aldolase 54 205 4.8E-7 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_0418 85ec8645a545e268b2a3a292159033e0 233 SUPERFAMILY SSF51569 6 226 2.62E-52 T 12-10-2018 YPK_0418 85ec8645a545e268b2a3a292159033e0 233 PIRSF PIRSF001357 3 229 4.4E-62 T 12-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_0418 85ec8645a545e268b2a3a292159033e0 233 SMART SM01133 9 225 8.6E-52 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_3760 fdfab9e0056fffa510c7a5872e7c4bb3 91 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 81 2.9E-38 T 12-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPK_3760 fdfab9e0056fffa510c7a5872e7c4bb3 91 SUPERFAMILY SSF47413 4 72 6.75E-31 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_3760 fdfab9e0056fffa510c7a5872e7c4bb3 91 Gene3D G3DSA:1.10.260.40 3 71 2.3E-33 T 12-10-2018 YPK_3810 7eff6aec5550c84374a5e47480725be8 293 Pfam PF02666 Phosphatidylserine decarboxylase 63 284 8.9E-60 T 12-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 YPK_3810 7eff6aec5550c84374a5e47480725be8 293 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 284 1.7E-93 T 12-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 YPK_3810 7eff6aec5550c84374a5e47480725be8 293 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 287 48.699 T 12-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 YPK_0337 3122d49df73954aa91c8d607ffb1baa0 165 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.403 T 12-10-2018 IPR022973 Ribosomal protein L10 YPK_0337 3122d49df73954aa91c8d607ffb1baa0 165 SUPERFAMILY SSF160369 4 162 4.71E-48 T 12-10-2018 YPK_0337 3122d49df73954aa91c8d607ffb1baa0 165 Gene3D G3DSA:3.30.70.1730 1 126 4.2E-35 T 12-10-2018 YPK_0337 3122d49df73954aa91c8d607ffb1baa0 165 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 157 6.0E-4 T 12-10-2018 YPK_0337 3122d49df73954aa91c8d607ffb1baa0 165 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 12-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0337 3122d49df73954aa91c8d607ffb1baa0 165 Pfam PF00466 Ribosomal protein L10 6 101 1.6E-25 T 12-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 SUPERFAMILY SSF55347 155 317 4.46E-54 T 12-10-2018 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 4.8E-51 T 12-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 9.5E-185 T 12-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.4E-28 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.4E-28 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.4E-28 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 1.4E-28 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 1.4E-28 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 PIRSF PIRSF000149 1 337 6.7E-128 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 3.7E-33 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 SMART SM00846 3 155 3.0E-78 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 Gene3D G3DSA:3.30.360.10 154 318 3.1E-128 T 12-10-2018 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 12-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 64.406 T 12-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 SUPERFAMILY SSF51735 1 154 3.96E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0851 a5e1f37b1fc95de0696db3199471c9af 338 Gene3D G3DSA:3.40.50.720 4 328 3.1E-128 T 12-10-2018 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 PIRSF PIRSF000722 2 400 1.3E-144 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 Gene3D G3DSA:3.30.420.40 199 400 7.1E-87 T 12-10-2018 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 PRINTS PR00471 Acetate kinase family signature 380 392 1.6E-48 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 PRINTS PR00471 Acetate kinase family signature 6 17 1.6E-48 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 PRINTS PR00471 Acetate kinase family signature 325 341 1.6E-48 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 PRINTS PR00471 Acetate kinase family signature 206 227 1.6E-48 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 PRINTS PR00471 Acetate kinase family signature 176 189 1.6E-48 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 PRINTS PR00471 Acetate kinase family signature 302 315 1.6E-48 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 SUPERFAMILY SSF53067 4 199 2.07E-63 T 12-10-2018 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 Gene3D G3DSA:3.30.420.40 3 198 1.5E-77 T 12-10-2018 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 Pfam PF00871 Acetokinase family 6 393 1.2E-175 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 189.068 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 6.3E-184 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 YPK_1551 4c67b82eb21c479c36b7194e5ec98548 400 SUPERFAMILY SSF53067 160 398 6.11E-85 T 12-10-2018 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.245 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 Gene3D G3DSA:3.30.70.141 1 141 8.5E-59 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 Pfam PF00334 Nucleoside diphosphate kinase 4 138 4.4E-56 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 12-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 SUPERFAMILY SSF54919 1 139 9.56E-59 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 8.4E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 8.4E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 8.4E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 8.4E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 8.4E-40 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1289 32b4f48aa1a4501f8c046f6863a8781c 142 SMART SM00562 3 140 1.1E-84 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_3306 f59fd017df0ed4aae89c545dc90ccdb4 246 SUPERFAMILY SSF141523 40 158 9.68E-10 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like YPK_3306 f59fd017df0ed4aae89c545dc90ccdb4 246 Pfam PF03734 L,D-transpeptidase catalytic domain 43 158 2.9E-8 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 YPK_3125 a15fcfe347bcef1474e90e9ecac1cd87 348 Pfam PF03864 Phage major capsid protein E 4 346 2.3E-81 T 12-10-2018 IPR005564 Major capsid protein GpE YPK_3125 a15fcfe347bcef1474e90e9ecac1cd87 348 Gene3D G3DSA:3.15.30.10 27 337 5.5E-101 T 12-10-2018 YPK_3125 a15fcfe347bcef1474e90e9ecac1cd87 348 Gene3D G3DSA:3.30.1930.10 155 290 5.5E-101 T 12-10-2018 YPK_2454 394f3e3e2a90189a6044705d1f46bc15 455 Pfam PF07690 Major Facilitator Superfamily 40 395 1.3E-43 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2454 394f3e3e2a90189a6044705d1f46bc15 455 Pfam PF11700 Vacuole effluxer Atg22 like 399 449 6.2E-6 T 12-10-2018 IPR024671 Autophagy-related protein 22-like YPK_2454 394f3e3e2a90189a6044705d1f46bc15 455 Gene3D G3DSA:1.20.1250.20 21 450 2.6E-73 T 12-10-2018 YPK_2454 394f3e3e2a90189a6044705d1f46bc15 455 SUPERFAMILY SSF103473 22 447 9.16E-80 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2454 394f3e3e2a90189a6044705d1f46bc15 455 TIGRFAM TIGR02332 HpaX: 4-hydroxyphenylacetate permease 28 436 2.3E-236 T 12-10-2018 IPR012707 4-hydroxyphenylacetate permease GO:1900754|GO:1901241 YPK_3439 99ef893fbd44f0a2c54fbfe18291b61f 135 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 129 1.2E-28 T 12-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system YPK_3439 99ef893fbd44f0a2c54fbfe18291b61f 135 Gene3D G3DSA:1.10.1220.10 100 134 4.0E-6 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YPK_3439 99ef893fbd44f0a2c54fbfe18291b61f 135 Gene3D G3DSA:3.30.160.250 1 86 9.9E-21 T 12-10-2018 YPK_3439 99ef893fbd44f0a2c54fbfe18291b61f 135 SUPERFAMILY SSF143100 1 61 8.5E-14 T 12-10-2018 IPR035069 TTHA1013/TTHA0281-like YPK_3815 4f278be45f0104b000392c8a8fd068ea 130 PIRSF PIRSF000180 2 130 8.5E-56 T 12-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 YPK_3815 4f278be45f0104b000392c8a8fd068ea 130 Pfam PF02300 Fumarate reductase subunit C 3 128 6.9E-53 T 12-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 YPK_3815 4f278be45f0104b000392c8a8fd068ea 130 SUPERFAMILY SSF81343 2 129 5.56E-56 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3815 4f278be45f0104b000392c8a8fd068ea 130 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 7 114 6.0E-58 T 12-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 YPK_3815 4f278be45f0104b000392c8a8fd068ea 130 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 2 128 28.237 T 12-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 YPK_3815 4f278be45f0104b000392c8a8fd068ea 130 Gene3D G3DSA:1.20.1300.10 2 130 2.4E-49 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_1582 6f842ce12021a3244bb9ed0de25b0077 618 SUPERFAMILY SSF52016 434 615 3.92E-59 T 12-10-2018 YPK_1582 6f842ce12021a3244bb9ed0de25b0077 618 SUPERFAMILY SSF143975 1 433 1.29E-141 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_1582 6f842ce12021a3244bb9ed0de25b0077 618 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_1582 6f842ce12021a3244bb9ed0de25b0077 618 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 520 531 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_1582 6f842ce12021a3244bb9ed0de25b0077 618 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 616 0.0 T 12-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 YPK_1582 6f842ce12021a3244bb9ed0de25b0077 618 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 1 617 57.557 T 12-10-2018 YPK_1582 6f842ce12021a3244bb9ed0de25b0077 618 Gene3D G3DSA:3.50.30.80 434 583 1.1E-52 T 12-10-2018 YPK_1582 6f842ce12021a3244bb9ed0de25b0077 618 Pfam PF00920 Dehydratase family 67 613 5.3E-158 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 Gene3D G3DSA:3.40.630.30 1 211 7.0E-49 T 12-10-2018 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 8.3E-63 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 8.3E-63 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 8.3E-63 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 PRINTS PR01549 Autoinducer synthesis protein signature 163 180 8.3E-63 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 PRINTS PR01549 Autoinducer synthesis protein signature 119 140 8.3E-63 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 PRINTS PR01549 Autoinducer synthesis protein signature 141 162 8.3E-63 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 PRINTS PR01549 Autoinducer synthesis protein signature 94 106 8.3E-63 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 Pfam PF00765 Autoinducer synthase 8 188 7.9E-82 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 12-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_1656 7479152a2ac84b80f65afa95f5ee9cf2 214 SUPERFAMILY SSF55729 1 209 6.53E-38 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_1572 21febf70dbd4d0178cb024a55c80ac63 487 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 477 1.2E-132 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 YPK_1572 21febf70dbd4d0178cb024a55c80ac63 487 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 477 17.725 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 YPK_1572 21febf70dbd4d0178cb024a55c80ac63 487 Pfam PF00361 Proton-conducting membrane transporter 122 422 9.5E-81 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_3802 42c9874e2a500d9981933529568b7f67 637 SMART SM00257 592 635 2.7E-16 T 12-10-2018 IPR018392 LysM domain YPK_3802 42c9874e2a500d9981933529568b7f67 637 SMART SM00257 526 569 6.4E-13 T 12-10-2018 IPR018392 LysM domain YPK_3802 42c9874e2a500d9981933529568b7f67 637 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 243 462 1.4E-48 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 YPK_3802 42c9874e2a500d9981933529568b7f67 637 Pfam PF11741 AMIN domain 71 163 1.8E-7 T 12-10-2018 IPR021731 AMIN domain YPK_3802 42c9874e2a500d9981933529568b7f67 637 SMART SM00646 303 462 6.7E-73 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 YPK_3802 42c9874e2a500d9981933529568b7f67 637 Gene3D G3DSA:3.40.630.40 229 472 6.5E-70 T 12-10-2018 YPK_3802 42c9874e2a500d9981933529568b7f67 637 Pfam PF01476 LysM domain 593 635 1.1E-13 T 12-10-2018 IPR018392 LysM domain YPK_3802 42c9874e2a500d9981933529568b7f67 637 Pfam PF01476 LysM domain 527 569 1.0E-11 T 12-10-2018 IPR018392 LysM domain YPK_3802 42c9874e2a500d9981933529568b7f67 637 Gene3D G3DSA:2.60.40.3500 59 169 1.7E-13 T 12-10-2018 YPK_3802 42c9874e2a500d9981933529568b7f67 637 SUPERFAMILY SSF54106 526 569 1.44E-10 T 12-10-2018 YPK_3802 42c9874e2a500d9981933529568b7f67 637 SUPERFAMILY SSF53187 241 465 3.77E-52 T 12-10-2018 YPK_3802 42c9874e2a500d9981933529568b7f67 637 SUPERFAMILY SSF54106 592 635 6.8E-11 T 12-10-2018 YPK_3802 42c9874e2a500d9981933529568b7f67 637 Gene3D G3DSA:3.10.350.10 576 637 1.1E-16 T 12-10-2018 IPR036779 LysM domain superfamily YPK_3802 42c9874e2a500d9981933529568b7f67 637 Gene3D G3DSA:3.10.350.10 522 575 2.7E-15 T 12-10-2018 IPR036779 LysM domain superfamily YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.6E-58 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 1.6E-58 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 1.6E-58 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 1.6E-58 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 1.6E-58 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 1.6E-58 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.6E-58 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.2E-93 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 2.2E-93 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 2.2E-93 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.2E-93 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 2.2E-93 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 2.2E-93 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 2.2E-93 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 2.2E-93 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 637 6.1E-131 T 12-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal YPK_1501 2c740773ba6408173d84b5c799ee9047 656 Pfam PF01578 Cytochrome C assembly protein 89 296 1.5E-54 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 YPK_1501 2c740773ba6408173d84b5c799ee9047 656 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 7.7E-282 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_3335 adb953fe1873822e20638bfedd265e8c 257 Pfam PF03591 AzlC protein 27 167 1.8E-38 T 12-10-2018 IPR011606 Branched-chain amino acid transport, permease YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 Gene3D G3DSA:1.25.40.10 180 345 1.5E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 Gene3D G3DSA:1.25.40.10 39 179 6.9E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 SMART SM00028 180 213 40.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 SMART SM00028 69 102 64.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 SMART SM00028 107 140 140.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 SMART SM00028 282 315 350.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 SMART SM00028 214 247 0.61 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 Pfam PF13432 Tetratricopeptide repeat 185 243 0.0022 T 12-10-2018 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 Pfam PF13176 Tetratricopeptide repeat 71 97 0.028 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 SUPERFAMILY SSF48452 110 279 3.79E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 36.836 T 12-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 YPK_2026 1e86bf14c13f9706f0177f218b357f09 389 SUPERFAMILY SSF48452 42 138 1.39E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1250 a43d4f59be23734079f8fb91e4451fe3 231 Gene3D G3DSA:3.40.50.1000 29 229 1.4E-13 T 12-10-2018 IPR023214 HAD superfamily YPK_1250 a43d4f59be23734079f8fb91e4451fe3 231 Gene3D G3DSA:1.20.1440.100 40 113 1.4E-13 T 12-10-2018 YPK_1250 a43d4f59be23734079f8fb91e4451fe3 231 SUPERFAMILY SSF56784 22 213 9.18E-10 T 12-10-2018 IPR036412 HAD-like superfamily YPK_1250 a43d4f59be23734079f8fb91e4451fe3 231 Pfam PF12710 haloacid dehalogenase-like hydrolase 29 212 1.8E-13 T 12-10-2018 YPK_1250 a43d4f59be23734079f8fb91e4451fe3 231 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 22 231 4.0E-135 T 12-10-2018 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YPK_2226 2bc4dd72474fbd3819f9782b5e9a14d9 447 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 445 1.2E-252 T 12-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 YPK_2226 2bc4dd72474fbd3819f9782b5e9a14d9 447 Pfam PF04996 Succinylarginine dihydrolase 4 445 1.4E-216 T 12-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 YPK_2226 2bc4dd72474fbd3819f9782b5e9a14d9 447 SUPERFAMILY SSF55909 4 446 1.57E-201 T 12-10-2018 YPK_2226 2bc4dd72474fbd3819f9782b5e9a14d9 447 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 446 59.674 T 12-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 YPK_2226 2bc4dd72474fbd3819f9782b5e9a14d9 447 Gene3D G3DSA:3.75.10.20 1 447 6.4E-207 T 12-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 YPK_1645 c7f5157ead3bc7a84cc519e34c0c7fb0 1095 SUPERFAMILY SSF52540 430 872 1.58E-17 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1645 c7f5157ead3bc7a84cc519e34c0c7fb0 1095 Gene3D G3DSA:1.10.3210.30 89 220 3.9E-9 T 12-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily YPK_1645 c7f5157ead3bc7a84cc519e34c0c7fb0 1095 TIGRFAM TIGR02562 cas3_yersinia: CRISPR-associated helicase Cas3, subtype I-F/YPEST 1 1090 0.0 T 12-10-2018 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type YPK_1419 7c2c3685c6f5d243ab0ccb01dc83d91d 65 Pfam PF11755 Protein of unknown function (DUF3311) 7 64 2.6E-17 T 12-10-2018 IPR021741 Protein of unknown function DUF3311 YPK_1285 1d6d3904badd36d46a63f92edaae59e4 305 Pfam PF14581 SseB protein C-terminal domain 180 290 1.0E-34 T 12-10-2018 IPR027945 SseB protein, C-terminal YPK_1285 1d6d3904badd36d46a63f92edaae59e4 305 Pfam PF07179 SseB protein N-terminal domain 36 164 3.3E-29 T 12-10-2018 IPR009839 SseB protein N-terminal domain YPK_0576 bc220d7224dcbffdd407a04b94969edf 177 SUPERFAMILY SSF160207 2 176 2.62E-56 T 12-10-2018 IPR037891 Immunity protein Cdil-like superfamily YPK_0576 bc220d7224dcbffdd407a04b94969edf 177 Gene3D G3DSA:3.40.1590.10 1 177 5.8E-84 T 12-10-2018 IPR037891 Immunity protein Cdil-like superfamily YPK_0576 bc220d7224dcbffdd407a04b94969edf 177 Pfam PF07262 CDI immunity protein 9 175 2.3E-44 T 12-10-2018 IPR009888 Immunity protein CdiI YPK_3107 16379c7c4fa27d226ceccd193234b9d5 151 Pfam PF00589 Phage integrase family 9 103 4.5E-6 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_3107 16379c7c4fa27d226ceccd193234b9d5 151 Gene3D G3DSA:1.10.443.10 4 138 5.3E-12 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_3107 16379c7c4fa27d226ceccd193234b9d5 151 SUPERFAMILY SSF56349 12 135 9.42E-20 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_0377 4e29038faee76da4e307aa864e6ebc41 525 Gene3D G3DSA:1.20.58.370 9 103 2.6E-38 T 12-10-2018 IPR035277 MalF, N-terminal YPK_0377 4e29038faee76da4e307aa864e6ebc41 525 SUPERFAMILY SSF161098 272 514 7.06E-58 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0377 4e29038faee76da4e307aa864e6ebc41 525 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 308 512 3.8E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0377 4e29038faee76da4e307aa864e6ebc41 525 SUPERFAMILY SSF160964 23 271 1.44E-82 T 12-10-2018 YPK_0377 4e29038faee76da4e307aa864e6ebc41 525 Gene3D G3DSA:1.10.3720.10 281 525 1.7E-70 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0377 4e29038faee76da4e307aa864e6ebc41 525 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 108 271 6.7E-62 T 12-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain YPK_0377 4e29038faee76da4e307aa864e6ebc41 525 Gene3D G3DSA:2.40.430.10 126 215 1.7E-54 T 12-10-2018 YPK_0377 4e29038faee76da4e307aa864e6ebc41 525 Gene3D G3DSA:3.10.650.10 106 279 1.7E-54 T 12-10-2018 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 9.5E-38 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 9.5E-38 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 9.5E-38 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 9.5E-38 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 9.5E-38 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 9.5E-38 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 SUPERFAMILY SSF48168 10 221 1.44E-72 T 12-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 Pfam PF03477 ATP cone domain 6 92 8.4E-16 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 4.7E-178 T 12-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 219 4.0E-12 T 12-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 SUPERFAMILY SSF51998 222 741 5.49E-168 T 12-10-2018 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 2.6E-116 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 Gene3D G3DSA:1.10.1650.20 341 394 1.4E-155 T 12-10-2018 YPK_2848 71c1a417ed3b7619887c34bf110f9c5c 762 Gene3D G3DSA:3.20.70.20 209 732 1.4E-155 T 12-10-2018 YPK_1657 4f75005f5f2ac1b3d19897395e2902f4 308 SUPERFAMILY SSF103481 55 159 4.58E-15 T 12-10-2018 YPK_1657 4f75005f5f2ac1b3d19897395e2902f4 308 Pfam PF00892 EamA-like transporter family 170 303 2.6E-16 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1657 4f75005f5f2ac1b3d19897395e2902f4 308 Pfam PF00892 EamA-like transporter family 20 156 4.7E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1657 4f75005f5f2ac1b3d19897395e2902f4 308 SUPERFAMILY SSF103481 203 303 3.66E-11 T 12-10-2018 YPK_2021 00059b692391c88b038ef2187826dad2 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 196 4.4E-45 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_2021 00059b692391c88b038ef2187826dad2 231 SUPERFAMILY SSF53639 1 223 3.34E-67 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_2021 00059b692391c88b038ef2187826dad2 231 SMART SM01007 7 198 8.8E-66 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_2021 00059b692391c88b038ef2187826dad2 231 Gene3D G3DSA:3.40.225.10 1 231 3.4E-59 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_2021 00059b692391c88b038ef2187826dad2 231 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 1.9E-125 T 12-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 ProSitePatterns PS00164 Enolase signature. 339 352 - T 12-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 1.1E-139 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 SUPERFAMILY SSF51604 143 427 1.84E-127 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 SMART SM01192 143 430 1.3E-212 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 PIRSF PIRSF001400 1 429 1.5E-191 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 Hamap MF_00318 Enolase [eno]. 2 416 44.11 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 Gene3D G3DSA:3.20.20.120 128 431 7.9E-137 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 SUPERFAMILY SSF54826 3 138 3.16E-56 T 12-10-2018 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 Gene3D G3DSA:3.30.390.10 3 127 1.0E-54 T 12-10-2018 IPR029017 Enolase-like, N-terminal YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 SMART SM01193 4 134 5.3E-93 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 Pfam PF03952 Enolase, N-terminal domain 4 134 2.6E-58 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 3.0E-205 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 PRINTS PR00148 Enolase signature 368 385 1.2E-44 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 PRINTS PR00148 Enolase signature 316 327 1.2E-44 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3446 fc2d8d73fa565bf41d4d47a1a8ba4b3c 431 PRINTS PR00148 Enolase signature 339 353 1.2E-44 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_2654 afa3a911adce840f14bf02524e1d51ab 618 Pfam PF03734 L,D-transpeptidase catalytic domain 377 546 6.4E-29 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 YPK_2654 afa3a911adce840f14bf02524e1d51ab 618 SUPERFAMILY SSF141523 378 536 4.32E-19 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like YPK_2654 afa3a911adce840f14bf02524e1d51ab 618 Gene3D G3DSA:1.10.101.10 309 349 1.7E-9 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 YPK_2654 afa3a911adce840f14bf02524e1d51ab 618 SUPERFAMILY SSF47090 315 358 4.24E-11 T 12-10-2018 IPR036365 PGBD-like superfamily YPK_2654 afa3a911adce840f14bf02524e1d51ab 618 Pfam PF01471 Putative peptidoglycan binding domain 316 350 3.3E-8 T 12-10-2018 IPR002477 Peptidoglycan binding-like YPK_1958 dd62b4599e35971572417842d683f4bf 343 Gene3D G3DSA:3.40.190.10 65 311 2.2E-34 T 12-10-2018 YPK_1958 dd62b4599e35971572417842d683f4bf 343 Pfam PF13379 NMT1-like family 56 268 3.6E-20 T 12-10-2018 YPK_1958 dd62b4599e35971572417842d683f4bf 343 SUPERFAMILY SSF53850 44 278 3.34E-40 T 12-10-2018 YPK_1958 dd62b4599e35971572417842d683f4bf 343 Gene3D G3DSA:3.40.190.10 120 224 2.2E-34 T 12-10-2018 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 SMART SM01209 103 296 2.5E-141 T 12-10-2018 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 422 4.4E-29 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 424 43.563 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 SUPERFAMILY SSF51246 329 425 6.8E-34 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 Gene3D G3DSA:3.30.470.20 191 329 2.8E-61 T 12-10-2018 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 SUPERFAMILY SSF52440 1 103 6.76E-36 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 9.2E-84 T 12-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 12-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 Gene3D G3DSA:3.30.1490.20 121 190 5.6E-29 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 4.5E-34 T 12-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 Gene3D G3DSA:3.40.50.20 2 95 2.7E-37 T 12-10-2018 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 SMART SM01210 330 424 3.1E-55 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 SUPERFAMILY SSF56059 104 323 1.06E-67 T 12-10-2018 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 424 5.3E-182 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0356 fb029471341faa3c9adb23364c3a8eaf 428 Gene3D G3DSA:3.90.600.10 330 425 1.7E-36 T 12-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 YPK_0790 2f136ad944000b27c0d1460133557b50 452 Gene3D G3DSA:2.60.40.2180 28 127 1.2E-17 T 12-10-2018 YPK_0790 2f136ad944000b27c0d1460133557b50 452 Pfam PF10503 Esterase PHB depolymerase 274 335 3.9E-5 T 12-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 YPK_0790 2f136ad944000b27c0d1460133557b50 452 Gene3D G3DSA:3.40.50.1820 182 452 7.5E-52 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0790 2f136ad944000b27c0d1460133557b50 452 SUPERFAMILY SSF53474 186 386 8.6E-19 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1569 2aa43b20da3c7458c4462c4b08fa1675 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 95 1.6E-22 T 12-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like YPK_1569 2aa43b20da3c7458c4462c4b08fa1675 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 20.052 T 12-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 Gene3D G3DSA:1.10.10.10 1 89 9.9E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 SUPERFAMILY SSF46785 1 109 6.53E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 SUPERFAMILY SSF53850 88 291 2.02E-38 T 12-10-2018 YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 Gene3D G3DSA:3.40.190.10 160 263 6.5E-71 T 12-10-2018 YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 Pfam PF03466 LysR substrate binding domain 87 288 7.0E-41 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_3953 49bf38f455a39c2ab3818fd1ce0e2db0 317 Gene3D G3DSA:3.40.190.10 90 286 6.5E-71 T 12-10-2018 YPK_4177 95887177c283af69ca7efab5965e76e3 91 Pfam PF01192 RNA polymerase Rpb6 10 60 8.2E-17 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 YPK_4177 95887177c283af69ca7efab5965e76e3 91 Gene3D G3DSA:3.90.940.10 1 91 1.3E-30 T 12-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 YPK_4177 95887177c283af69ca7efab5965e76e3 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 2.1E-28 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_4177 95887177c283af69ca7efab5965e76e3 91 SMART SM01409 8 61 1.0E-16 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 YPK_4177 95887177c283af69ca7efab5965e76e3 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.134 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 YPK_4177 95887177c283af69ca7efab5965e76e3 91 SUPERFAMILY SSF63562 1 79 2.44E-25 T 12-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 SMART SM01004 9 333 1.2E-239 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 12-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 SUPERFAMILY SSF51569 7 335 1.42E-143 T 12-10-2018 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 2.0E-139 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 Gene3D G3DSA:3.20.20.70 3 337 2.3E-146 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 PIRSF PIRSF001415 2 336 5.4E-154 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 2.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 2.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 2.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 2.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 2.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_3938 1f36be251c3ea54df3195f90e5550a5b 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 2.4E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 YPK_1842 3491a9fe4a1d6d827de8fbe40d9db6cf 273 Pfam PF03618 Kinase/pyrophosphorylase 5 263 2.2E-73 T 12-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 YPK_1842 3491a9fe4a1d6d827de8fbe40d9db6cf 273 SUPERFAMILY SSF47454 173 230 6.28E-5 T 12-10-2018 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily GO:0003677|GO:0006355 YPK_1842 3491a9fe4a1d6d827de8fbe40d9db6cf 273 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 272 73.599 T 12-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein YPK_1197 e68f5228062698fb6667a107c95b29c0 463 SMART SM00487 3 204 0.0063 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_1197 e68f5228062698fb6667a107c95b29c0 463 SUPERFAMILY SSF52540 124 457 3.54E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1197 e68f5228062698fb6667a107c95b29c0 463 SUPERFAMILY SSF52540 4 212 3.1E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1197 e68f5228062698fb6667a107c95b29c0 463 Gene3D G3DSA:3.40.50.10810 21 233 8.3E-19 T 12-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily YPK_1197 e68f5228062698fb6667a107c95b29c0 463 Pfam PF00176 SNF2 family N-terminal domain 30 270 1.8E-12 T 12-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 YPK_1197 e68f5228062698fb6667a107c95b29c0 463 Gene3D G3DSA:3.40.50.300 246 462 8.2E-15 T 12-10-2018 YPK_2186 1297634acddb90a5abfedfae0677a895 206 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 121 131 - T 12-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 YPK_2186 1297634acddb90a5abfedfae0677a895 206 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 14 193 35.323 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 YPK_2186 1297634acddb90a5abfedfae0677a895 206 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 14 200 1.3E-68 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 YPK_2186 1297634acddb90a5abfedfae0677a895 206 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 27 40 - T 12-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 YPK_2186 1297634acddb90a5abfedfae0677a895 206 SUPERFAMILY SSF53178 14 203 4.19E-68 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 YPK_2186 1297634acddb90a5abfedfae0677a895 206 Pfam PF01195 Peptidyl-tRNA hydrolase 16 199 3.6E-52 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 YPK_2186 1297634acddb90a5abfedfae0677a895 206 Gene3D G3DSA:3.40.50.1470 7 205 2.8E-72 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 YPK_1251 68df711c271a47bc1e58055f332e83d0 187 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 29 170 47.484 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 YPK_1251 68df711c271a47bc1e58055f332e83d0 187 Gene3D G3DSA:3.40.140.10 19 183 8.3E-65 T 12-10-2018 YPK_1251 68df711c271a47bc1e58055f332e83d0 187 Pfam PF14437 MafB19-like deaminase 25 170 1.6E-30 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 YPK_1251 68df711c271a47bc1e58055f332e83d0 187 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 74 111 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 YPK_1251 68df711c271a47bc1e58055f332e83d0 187 SUPERFAMILY SSF53927 23 174 5.19E-56 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 SUPERFAMILY SSF51419 8 234 4.07E-71 T 12-10-2018 IPR029066 PLP-binding barrel YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 SMART SM01005 233 357 2.8E-59 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 12-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 TIGRFAM TIGR00492 alr: alanine racemase 3 357 4.6E-132 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 Hamap MF_01201 Alanine racemase. 1 357 34.065 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 26 42 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 60 78 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 192 219 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 155 166 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 249 264 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 266 281 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 339 352 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 120 132 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 PRINTS PR00992 Alanine racemase signature 287 304 1.2E-71 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 1.8E-71 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 SUPERFAMILY SSF50621 225 358 1.15E-42 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 Pfam PF00842 Alanine racemase, C-terminal domain 233 356 1.9E-38 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 Gene3D G3DSA:3.20.20.10 10 217 5.6E-132 T 12-10-2018 IPR029066 PLP-binding barrel YPK_3854 7ff5a884db5b9bb3982c7ef9f141aa3d 359 Gene3D G3DSA:2.40.37.10 8 352 5.6E-132 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 YPK_1221 e65fcc75dcb7bf56182e94e06e48409d 119 SUPERFAMILY SSF47413 62 118 4.29E-12 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1221 e65fcc75dcb7bf56182e94e06e48409d 119 Pfam PF01381 Helix-turn-helix 65 113 3.4E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1221 e65fcc75dcb7bf56182e94e06e48409d 119 SMART SM00530 63 117 2.3E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1221 e65fcc75dcb7bf56182e94e06e48409d 119 Gene3D G3DSA:1.10.260.40 63 118 3.3E-12 T 12-10-2018 YPK_1700 3903e67b533ac7c213b8ec232422bb81 343 Gene3D G3DSA:3.20.20.300 1 343 5.1E-132 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 YPK_1700 3903e67b533ac7c213b8ec232422bb81 343 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 11 292 4.7E-95 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 YPK_1700 3903e67b533ac7c213b8ec232422bb81 343 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 3 332 48.68 T 12-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 YPK_1700 3903e67b533ac7c213b8ec232422bb81 343 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 234 251 - T 12-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 YPK_1700 3903e67b533ac7c213b8ec232422bb81 343 SUPERFAMILY SSF51445 3 317 4.53E-86 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0333 26470275fe3fceca384061a7b166f1cc 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 4.1E-17 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YPK_0333 26470275fe3fceca384061a7b166f1cc 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 67 121 13.188 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0333 26470275fe3fceca384061a7b166f1cc 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 3.9E-20 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0333 26470275fe3fceca384061a7b166f1cc 127 Gene3D G3DSA:1.20.5.1030 66 123 4.9E-16 T 12-10-2018 IPR038379 SecE superfamily YPK_0333 26470275fe3fceca384061a7b166f1cc 127 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 71 99 - T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 YPK_0333 26470275fe3fceca384061a7b166f1cc 127 PRINTS PR01650 Bacterial translocase SecE signature 65 85 1.8E-38 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YPK_0333 26470275fe3fceca384061a7b166f1cc 127 PRINTS PR01650 Bacterial translocase SecE signature 109 125 1.8E-38 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YPK_0333 26470275fe3fceca384061a7b166f1cc 127 PRINTS PR01650 Bacterial translocase SecE signature 89 109 1.8E-38 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YPK_0333 26470275fe3fceca384061a7b166f1cc 127 PRINTS PR01650 Bacterial translocase SecE signature 44 65 1.8E-38 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 YPK_3328 68324c0d7f6e6f833a8445dfb0cbfa7a 222 Gene3D G3DSA:1.10.3720.10 3 217 2.2E-47 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3328 68324c0d7f6e6f833a8445dfb0cbfa7a 222 SUPERFAMILY SSF161098 15 202 4.97E-40 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3328 68324c0d7f6e6f833a8445dfb0cbfa7a 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 2.7E-26 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_3328 68324c0d7f6e6f833a8445dfb0cbfa7a 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 209 2.5E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0508 eb3921912448b136df7ba9437fd2df94 187 Gene3D G3DSA:2.60.450.10 60 187 1.7E-48 T 12-10-2018 YPK_0508 eb3921912448b136df7ba9437fd2df94 187 PIRSF PIRSF028513 1 187 5.4E-42 T 12-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 YPK_0508 eb3921912448b136df7ba9437fd2df94 187 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 6 183 3.1E-55 T 12-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 YPK_0508 eb3921912448b136df7ba9437fd2df94 187 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 186 27.553 T 12-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 YPK_0508 eb3921912448b136df7ba9437fd2df94 187 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 13 184 1.6E-53 T 12-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related YPK_3712 73254108abdab6572b8594bfc559b1ee 95 Gene3D G3DSA:3.40.1440.10 2 92 3.2E-28 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 YPK_3712 73254108abdab6572b8594bfc559b1ee 95 SUPERFAMILY SSF82771 5 76 6.41E-12 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 YPK_3712 73254108abdab6572b8594bfc559b1ee 95 Hamap MF_01029 UPF0213 protein YhbQ [yhbQ]. 3 95 33.518 T 12-10-2018 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease YPK_3712 73254108abdab6572b8594bfc559b1ee 95 Pfam PF01541 GIY-YIG catalytic domain 6 77 1.5E-12 T 12-10-2018 IPR000305 GIY-YIG endonuclease YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 Pfam PF01580 FtsK/SpoIIIE family 928 1141 4.6E-72 T 12-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 Pfam PF09397 Ftsk gamma domain 1245 1305 1.0E-26 T 12-10-2018 IPR018541 FtsK gamma domain YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 SMART SM00843 1243 1308 1.1E-40 T 12-10-2018 IPR018541 FtsK gamma domain YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 Gene3D G3DSA:3.40.50.300 925 1227 1.6E-123 T 12-10-2018 YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 Gene3D G3DSA:1.10.10.10 1247 1310 4.0E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 SUPERFAMILY SSF52540 902 1214 7.44E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 7.6E-44 T 12-10-2018 IPR025199 DNA translocase FtsK, 4TM region YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 SUPERFAMILY SSF46785 1243 1308 2.18E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2685 bd85f30055225ff6eaa1a061aa02b109 1310 Gene3D G3DSA:3.30.980.40 820 924 4.8E-34 T 12-10-2018 YPK_1311 b8deb2b77e153336c435d16f120213a8 244 SUPERFAMILY SSF49695 52 116 5.85E-8 T 12-10-2018 IPR011024 Gamma-crystallin-like YPK_1311 b8deb2b77e153336c435d16f120213a8 244 Gene3D G3DSA:2.60.20.10 20 117 5.4E-14 T 12-10-2018 YPK_1883 aea91bdb5c03821cb2bedd580915625e 201 SUPERFAMILY SSF52833 1 79 4.12E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_1883 aea91bdb5c03821cb2bedd580915625e 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 1.5E-12 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YPK_1883 aea91bdb5c03821cb2bedd580915625e 201 Gene3D G3DSA:1.20.1050.10 82 188 5.9E-79 T 12-10-2018 YPK_1883 aea91bdb5c03821cb2bedd580915625e 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 101 189 8.9E-15 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal YPK_1883 aea91bdb5c03821cb2bedd580915625e 201 Gene3D G3DSA:3.40.30.10 3 193 5.9E-79 T 12-10-2018 YPK_1883 aea91bdb5c03821cb2bedd580915625e 201 SUPERFAMILY SSF47616 84 199 3.06E-27 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPK_3714 62d757059c953ae4aa4dbd1eb481e473 200 PIRSF PIRSF025550 28 200 9.7E-84 T 12-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT YPK_3714 62d757059c953ae4aa4dbd1eb481e473 200 SUPERFAMILY SSF55718 69 164 2.59E-23 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily YPK_3714 62d757059c953ae4aa4dbd1eb481e473 200 Gene3D G3DSA:3.30.1050.10 66 166 9.0E-10 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily YPK_3714 62d757059c953ae4aa4dbd1eb481e473 200 Pfam PF02036 SCP-2 sterol transfer family 73 160 2.7E-19 T 12-10-2018 IPR003033 SCP2 sterol-binding domain YPK_1608 ef66e7270faf3d2635c0c896cf2a35bf 180 Pfam PF16809 NleF caspase inhibitor 37 179 4.0E-58 T 12-10-2018 IPR031829 Effector protein NleF YPK_1608 ef66e7270faf3d2635c0c896cf2a35bf 180 Gene3D G3DSA:1.20.1260.90 34 177 3.2E-18 T 12-10-2018 IPR038334 NleF superfamily YPK_2254 027271c28473b904620620244292531b 335 SUPERFAMILY SSF56601 24 326 2.72E-100 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_2254 027271c28473b904620620244292531b 335 Gene3D G3DSA:3.40.710.10 21 328 1.5E-101 T 12-10-2018 YPK_2254 027271c28473b904620620244292531b 335 TIGRFAM TIGR03814 Gln_ase: glutaminase A 27 326 1.3E-100 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YPK_2254 027271c28473b904620620244292531b 335 Pfam PF04960 Glutaminase 42 326 1.9E-95 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YPK_2254 027271c28473b904620620244292531b 335 Hamap MF_00313 Glutaminase [glsA]. 24 326 40.831 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 YPK_2006 6f80aede1f5521bfa77f167c29dcd81a 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.463 T 12-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 YPK_2006 6f80aede1f5521bfa77f167c29dcd81a 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 1.8E-60 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_2006 6f80aede1f5521bfa77f167c29dcd81a 193 PIRSF PIRSF006102 1 193 3.8E-62 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_2006 6f80aede1f5521bfa77f167c29dcd81a 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 1.1E-90 T 12-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 YPK_1624 1c847fe2f3480e81577abc478947d744 88 SUPERFAMILY SSF46689 1 73 1.58E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1624 1c847fe2f3480e81577abc478947d744 88 Pfam PF01527 Transposase 2 71 1.7E-19 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 Pfam PF09209 Domain of unknown function (DUF1956) 104 230 8.0E-35 T 12-10-2018 IPR015292 Transcription regulator YbiH, C-terminal YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 72 7.5E-14 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 Gene3D G3DSA:1.10.357.10 73 235 1.1E-51 T 12-10-2018 YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 SUPERFAMILY SSF46689 13 94 3.75E-21 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 ProSitePatterns PS01081 TetR-type HTH domain signature. 38 68 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 SUPERFAMILY SSF48498 101 231 9.56E-37 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 1.7E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 1.7E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_2899 dd9d1762d2ed0fa08fa7419d2971ea4b 236 Gene3D G3DSA:1.10.10.60 12 72 8.8E-26 T 12-10-2018 YPK_0478 b8053d905110270ee05213a460b78a84 1489 SUPERFAMILY SSF69318 386 671 2.22E-17 T 12-10-2018 YPK_0478 b8053d905110270ee05213a460b78a84 1489 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 89 105 3.1E-27 T 12-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YPK_0478 b8053d905110270ee05213a460b78a84 1489 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 189 207 3.1E-27 T 12-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YPK_0478 b8053d905110270ee05213a460b78a84 1489 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 30 51 3.1E-27 T 12-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YPK_0478 b8053d905110270ee05213a460b78a84 1489 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 297 315 3.1E-27 T 12-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YPK_0478 b8053d905110270ee05213a460b78a84 1489 Pfam PF12255 Insecticide toxin TcdB middle/C-terminal region 867 1013 9.4E-56 T 12-10-2018 IPR022044 Insecticide toxin TcdB middle/C-terminal YPK_0478 b8053d905110270ee05213a460b78a84 1489 Pfam PF12256 Insecticide toxin TcdB middle/N-terminal region 643 817 3.3E-30 T 12-10-2018 IPR022045 Insecticide toxin TcdB middle/N-terminal YPK_0478 b8053d905110270ee05213a460b78a84 1489 Pfam PF03534 Salmonella virulence plasmid 65kDa B protein 33 316 1.6E-98 T 12-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 7.8E-38 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.043 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 7.0E-36 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 SUPERFAMILY SSF50249 5 82 2.7E-33 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 9.2E-14 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 9.2E-14 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 9.2E-14 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 Pfam PF00366 Ribosomal protein S17 10 76 1.6E-33 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 Gene3D G3DSA:2.40.50.140 1 84 5.9E-40 T 12-10-2018 YPK_0292 4607bef6f01d5b77e0d11f76a7676fcb 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 12-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 Gene3D G3DSA:1.10.1220.10 11 52 2.1E-23 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 Gene3D G3DSA:1.20.5.550 88 139 1.4E-29 T 12-10-2018 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 Pfam PF01619 Proline dehydrogenase 271 570 6.4E-100 T 12-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 Pfam PF00171 Aldehyde dehydrogenase family 659 1107 1.0E-114 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 SUPERFAMILY SSF47598 4 45 2.67E-10 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 149 260 1.8E-45 T 12-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 Gene3D G3DSA:3.40.605.10 636 1114 7.5E-145 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 SUPERFAMILY SSF81935 89 262 1.1E-65 T 12-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 PIRSF PIRSF000197 75 1323 0.0 T 12-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 883 890 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 SUPERFAMILY SSF51730 263 618 2.31E-123 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 Gene3D G3DSA:3.20.20.220 221 611 6.5E-161 T 12-10-2018 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 611 1114 6.4E-250 T 12-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 911 922 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 SUPERFAMILY SSF53720 635 1113 2.36E-129 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_2369 4344236959c53cd7cf03ce59191a3003 1323 Gene3D G3DSA:3.40.309.10 886 1083 7.5E-145 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_4000 1eecf44797e6cab923e34896d13623f5 156 SUPERFAMILY SSF54637 13 155 1.0E-24 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_4000 1eecf44797e6cab923e34896d13623f5 156 Pfam PF03061 Thioesterase superfamily 58 143 1.9E-15 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 YPK_4000 1eecf44797e6cab923e34896d13623f5 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 27 154 2.8E-15 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 YPK_4000 1eecf44797e6cab923e34896d13623f5 156 Gene3D G3DSA:3.10.129.10 4 156 2.3E-48 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 Pfam PF00122 E1-E2 ATPase 272 451 3.8E-45 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 Gene3D G3DSA:3.30.70.100 81 151 5.1E-15 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 Gene3D G3DSA:3.40.1110.10 483 608 1.1E-79 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 Pfam PF00403 Heavy-metal-associated domain 87 143 5.1E-12 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 YPK_3985 80707755f7031f0693e47aa9819915d7 782 SUPERFAMILY SSF81665 224 762 4.18E-17 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 ProSitePatterns PS01047 Heavy-metal-associated domain. 88 117 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 YPK_3985 80707755f7031f0693e47aa9819915d7 782 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 474 480 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 Gene3D G3DSA:2.70.150.20 271 376 2.2E-29 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 Gene3D G3DSA:3.40.50.1000 453 725 1.1E-79 T 12-10-2018 IPR023214 HAD superfamily YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00941 Cadmium-transporting ATPase signature 276 292 5.3E-9 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00941 Cadmium-transporting ATPase signature 86 95 5.3E-9 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00941 Cadmium-transporting ATPase signature 256 276 5.3E-9 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00941 Cadmium-transporting ATPase signature 97 118 5.3E-9 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00941 Cadmium-transporting ATPase signature 337 353 5.3E-9 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 321 335 2.7E-28 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 601 612 2.7E-28 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 472 486 2.7E-28 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 674 693 2.7E-28 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 623 633 2.7E-28 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 697 709 2.7E-28 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 221 776 1.4E-172 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 SUPERFAMILY SSF56784 470 774 1.71E-51 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3985 80707755f7031f0693e47aa9819915d7 782 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 244 752 5.9E-74 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 SUPERFAMILY SSF81653 274 371 3.66E-21 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 YPK_3985 80707755f7031f0693e47aa9819915d7 782 Pfam PF00702 haloacid dehalogenase-like hydrolase 470 686 9.1E-35 T 12-10-2018 YPK_3985 80707755f7031f0693e47aa9819915d7 782 SUPERFAMILY SSF55008 82 146 1.7E-14 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 YPK_3932 93eb2a31bf4ce1b51ab4dd8ea0e9ac66 443 Gene3D G3DSA:3.40.350.10 1 159 3.7E-63 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_3932 93eb2a31bf4ce1b51ab4dd8ea0e9ac66 443 Gene3D G3DSA:3.90.230.10 161 443 2.4E-75 T 12-10-2018 YPK_3932 93eb2a31bf4ce1b51ab4dd8ea0e9ac66 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 12-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPK_3932 93eb2a31bf4ce1b51ab4dd8ea0e9ac66 443 Pfam PF00557 Metallopeptidase family M24 168 430 1.2E-40 T 12-10-2018 IPR000994 Peptidase M24 YPK_3932 93eb2a31bf4ce1b51ab4dd8ea0e9ac66 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 58.676 T 12-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 YPK_3932 93eb2a31bf4ce1b51ab4dd8ea0e9ac66 443 SUPERFAMILY SSF55920 163 438 4.84E-53 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like YPK_0853 1890b72a315aa42297ab43aec0f2dcee 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 4.3E-89 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0853 1890b72a315aa42297ab43aec0f2dcee 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 8.8E-115 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0853 1890b72a315aa42297ab43aec0f2dcee 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0853 1890b72a315aa42297ab43aec0f2dcee 359 PIRSF PIRSF001359 13 359 6.1E-103 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0853 1890b72a315aa42297ab43aec0f2dcee 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 4.0E-190 T 12-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 YPK_0853 1890b72a315aa42297ab43aec0f2dcee 359 SUPERFAMILY SSF51569 4 357 4.98E-132 T 12-10-2018 YPK_0853 1890b72a315aa42297ab43aec0f2dcee 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0853 1890b72a315aa42297ab43aec0f2dcee 359 Gene3D G3DSA:3.20.20.70 2 359 6.1E-154 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3006 0dc02922f4ee82f2eb3fc7526eb1737a 357 Gene3D G3DSA:3.40.50.300 121 327 1.3E-74 T 12-10-2018 YPK_3006 0dc02922f4ee82f2eb3fc7526eb1737a 357 Pfam PF02562 PhoH-like protein 124 327 6.3E-95 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 YPK_3006 0dc02922f4ee82f2eb3fc7526eb1737a 357 SUPERFAMILY SSF52540 123 299 1.82E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 Gene3D G3DSA:2.60.40.2610 711 801 7.7E-30 T 12-10-2018 YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 Gene3D G3DSA:2.60.40.2070 803 883 5.5E-18 T 12-10-2018 YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 Gene3D G3DSA:2.60.40.3110 293 382 7.2E-34 T 12-10-2018 YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 Gene3D G3DSA:3.10.20.410 40 180 1.5E-22 T 12-10-2018 YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 335 345 - T 12-10-2018 IPR018030 Fimbrial membrane usher, conserved site YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 Pfam PF13954 PapC N-terminal domain 42 203 1.2E-36 T 12-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 Pfam PF00577 Outer membrane usher protein 222 796 2.1E-145 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 Pfam PF13953 PapC C-terminal domain 805 865 8.0E-18 T 12-10-2018 IPR025949 PapC-like, C-terminal domain YPK_4044 1e857a7e994e84f0a0cecb8e1cdb9f93 883 SUPERFAMILY SSF141729 41 180 2.09E-24 T 12-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YPK_2116 19874cec2b421cda76b315b8f201b09d 390 Gene3D G3DSA:1.20.1250.20 1 378 1.3E-25 T 12-10-2018 YPK_2116 19874cec2b421cda76b315b8f201b09d 390 Pfam PF07690 Major Facilitator Superfamily 10 287 1.3E-9 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2116 19874cec2b421cda76b315b8f201b09d 390 SUPERFAMILY SSF103473 7 388 1.22E-30 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_4009 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Gene3D G3DSA:1.10.150.130 9 103 1.9E-19 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_4009 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 13 300 1.2E-107 T 12-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 YPK_4009 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Gene3D G3DSA:1.10.443.10 116 292 7.6E-58 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_4009 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Pfam PF00589 Phage integrase family 117 284 6.8E-52 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_4009 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 298 56.232 T 12-10-2018 IPR023009 Tyrosine recombinase XerC/XerD YPK_4009 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 95 4.3E-22 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 YPK_4009 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 SUPERFAMILY SSF56349 113 296 8.24E-53 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_4009 e9ab5dd7bce88b7a0ddf37f453dcdbba 303 SUPERFAMILY SSF47823 10 102 5.1E-11 T 12-10-2018 YPK_3294 38c0f930007cacccac215f177d26c7ac 261 Gene3D G3DSA:3.40.190.10 83 128 2.6E-6 T 12-10-2018 YPK_3294 38c0f930007cacccac215f177d26c7ac 261 Gene3D G3DSA:3.40.190.10 129 228 2.6E-6 T 12-10-2018 YPK_3294 38c0f930007cacccac215f177d26c7ac 261 SUPERFAMILY SSF53850 59 213 1.13E-7 T 12-10-2018 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 229 271 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 SUPERFAMILY SSF51182 16 91 3.2E-11 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_3841 67d610e0295a10763f5e5e438eecda58 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 244 259 6.7E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 275 6.7E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 Gene3D G3DSA:1.10.10.60 174 279 1.9E-25 T 12-10-2018 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 Pfam PF02311 AraC-like ligand binding domain 23 141 1.5E-15 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 Gene3D G3DSA:2.60.120.10 8 97 1.6E-8 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_3841 67d610e0295a10763f5e5e438eecda58 290 Pfam PF12833 Helix-turn-helix domain 206 277 1.6E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 SMART SM00342 192 275 5.5E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 SUPERFAMILY SSF46689 228 280 5.82E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3841 67d610e0295a10763f5e5e438eecda58 290 Hamap MF_01533 HTH-type transcriptional activator RhaR [rhaR]. 1 282 54.286 T 12-10-2018 IPR023699 Transcription activator HTH, RhaR GO:0003700|GO:0005737|GO:0019299|GO:0045893 YPK_0999 4022be5deff6efccc5c52c4088b43e3c 316 Pfam PF16946 OMPG-porin 1 family 131 316 3.7E-9 T 12-10-2018 IPR031605 Putative OMPG-porin 1 family YPK_2466 dd8ee5a4814f029f762089069028736b 292 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 20 290 1.2E-142 T 12-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 YPK_2466 dd8ee5a4814f029f762089069028736b 292 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 21 290 6.2E-112 T 12-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 YPK_3936 a6cc7c17f67bbcb8fbd1b295e9efefa1 506 Gene3D G3DSA:3.40.1670.10 348 465 4.0E-52 T 12-10-2018 YPK_3936 a6cc7c17f67bbcb8fbd1b295e9efefa1 506 SUPERFAMILY SSF50475 14 333 4.32E-128 T 12-10-2018 YPK_3936 a6cc7c17f67bbcb8fbd1b295e9efefa1 506 Gene3D G3DSA:1.20.5.570 466 505 1.4E-19 T 12-10-2018 YPK_3936 a6cc7c17f67bbcb8fbd1b295e9efefa1 506 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 12 498 73.872 T 12-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 YPK_3936 a6cc7c17f67bbcb8fbd1b295e9efefa1 506 SUPERFAMILY SSF143968 334 497 4.58E-68 T 12-10-2018 YPK_3936 a6cc7c17f67bbcb8fbd1b295e9efefa1 506 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 17 466 2.9E-187 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 YPK_3936 a6cc7c17f67bbcb8fbd1b295e9efefa1 506 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 22 442 1.5E-173 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 YPK_2087 8a8f2a6f339b06866761f056e0c9aa84 96 Pfam PF07383 Protein of unknown function (DUF1496) 36 94 9.0E-25 T 12-10-2018 IPR009971 Protein of unknown function DUF1496 YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 57 127 1.1E-25 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 Pfam PF16973 Flagellar motor switch protein FliN N-terminal 1 50 1.8E-24 T 12-10-2018 IPR031576 Flagellar motor switch protein FliN, N-terminal YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 90 103 3.7E-30 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 103 118 3.7E-30 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 57 73 3.7E-30 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 90 3.7E-30 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 54 129 2.5E-33 T 12-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 Gene3D G3DSA:2.30.330.10 48 138 1.3E-34 T 12-10-2018 IPR036429 SpoA-like superfamily YPK_2400 eca084ec01fd9ac7e59214a479e251cb 138 SUPERFAMILY SSF101801 55 136 1.28E-26 T 12-10-2018 IPR036429 SpoA-like superfamily YPK_0657 8afa4122c0ffe03893f4d19092436534 280 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 39 278 37.973 T 12-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 YPK_0657 8afa4122c0ffe03893f4d19092436534 280 SUPERFAMILY SSF56300 39 276 7.01E-57 T 12-10-2018 YPK_0657 8afa4122c0ffe03893f4d19092436534 280 Gene3D G3DSA:3.60.21.10 19 278 2.1E-66 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like YPK_0657 8afa4122c0ffe03893f4d19092436534 280 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 230 277 1.0E-22 T 12-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 YPK_0657 8afa4122c0ffe03893f4d19092436534 280 Pfam PF00149 Calcineurin-like phosphoesterase 40 231 2.9E-20 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Gene3D G3DSA:3.40.10.10 4 74 1.3E-31 T 12-10-2018 IPR035451 Ada-like domain superfamily YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Pfam PF02805 Metal binding domain of Ada 8 70 1.6E-31 T 12-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 SUPERFAMILY SSF46689 81 129 2.96E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 267 347 4.9E-31 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Gene3D G3DSA:1.10.10.10 265 351 6.3E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_4134 64c45b7f72354aefc6e820d59687355d 354 SUPERFAMILY SSF53155 186 264 9.42E-20 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Gene3D G3DSA:1.10.10.60 75 131 2.1E-22 T 12-10-2018 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 SUPERFAMILY SSF46767 265 347 3.66E-30 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 187 263 1.9E-5 T 12-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 266 345 3.2E-35 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 SMART SM00342 96 178 2.6E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 316 322 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 SUPERFAMILY SSF57884 6 88 5.1E-32 T 12-10-2018 IPR035451 Ada-like domain superfamily YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Pfam PF12833 Helix-turn-helix domain 102 179 1.3E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Gene3D G3DSA:3.30.160.70 177 264 7.3E-32 T 12-10-2018 YPK_4134 64c45b7f72354aefc6e820d59687355d 354 PIRSF PIRSF000409 1 354 1.6E-144 T 12-10-2018 IPR016221 Bifunctional regulatory protein Ada YPK_4134 64c45b7f72354aefc6e820d59687355d 354 Gene3D G3DSA:1.10.10.60 132 176 9.0E-7 T 12-10-2018 YPK_2146 ac9c0893ebd1e808cabb42ca0dd30700 247 Gene3D G3DSA:1.10.10.200 1 81 4.1E-34 T 12-10-2018 IPR017856 Integrase-like, N-terminal YPK_2146 ac9c0893ebd1e808cabb42ca0dd30700 247 SUPERFAMILY SSF75625 3 245 4.97E-94 T 12-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_2146 ac9c0893ebd1e808cabb42ca0dd30700 247 Pfam PF01709 Transcriptional regulator 5 236 3.6E-90 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_2146 ac9c0893ebd1e808cabb42ca0dd30700 247 Gene3D G3DSA:3.30.70.980 85 236 2.7E-57 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_2146 ac9c0893ebd1e808cabb42ca0dd30700 247 Gene3D G3DSA:3.30.70.980 130 205 2.7E-57 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_2146 ac9c0893ebd1e808cabb42ca0dd30700 247 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 6.7E-103 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_2146 ac9c0893ebd1e808cabb42ca0dd30700 247 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 35.576 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_1672 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 Gene3D G3DSA:3.30.9.10 59 313 8.3E-130 T 12-10-2018 YPK_1672 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 77.871 T 12-10-2018 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 YPK_1672 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 SUPERFAMILY SSF54373 212 313 2.63E-20 T 12-10-2018 YPK_1672 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 Pfam PF01266 FAD dependent oxidoreductase 4 350 1.9E-46 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 YPK_1672 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 Gene3D G3DSA:3.50.50.60 4 367 8.3E-130 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1672 c64d57ba96a9f0c5ec3fe6f39cc6dd7c 371 SUPERFAMILY SSF51905 2 370 3.56E-45 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 SUPERFAMILY SSF46894 129 226 3.68E-32 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 Gene3D G3DSA:3.40.50.2300 1 127 1.0E-37 T 12-10-2018 YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 SUPERFAMILY SSF52172 3 126 1.08E-42 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 Pfam PF00072 Response regulator receiver domain 5 117 9.6E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 Gene3D G3DSA:1.10.10.10 128 229 8.0E-42 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 SMART SM00862 150 225 3.2E-27 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 2.0E-114 T 12-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.2E-28 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_3276 7b41a020f895695e85526dfacbdde5f0 229 SMART SM00448 3 116 1.3E-44 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 Gene3D G3DSA:3.30.300.20 187 303 1.7E-43 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 SUPERFAMILY SSF54814 183 298 2.42E-42 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 Gene3D G3DSA:3.40.50.300 3 185 1.2E-50 T 12-10-2018 YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 SUPERFAMILY SSF52540 12 206 2.39E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 Pfam PF07650 KH domain 210 286 2.4E-19 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 171 8.5E-41 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 TIGRFAM TIGR00436 era: GTP-binding protein Era 10 281 7.7E-118 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 Hamap MF_00367 GTPase Era [era]. 7 298 35.886 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1190 d46e1d42bae8741a68fa3277ad8acd3e 303 Pfam PF01926 50S ribosome-binding GTPase 12 126 1.9E-22 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_2624 e473a9e575f6fb3d87bfb9bc6308449d 154 SMART SM00851 25 118 1.3E-26 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain YPK_2624 e473a9e575f6fb3d87bfb9bc6308449d 154 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 32.559 T 12-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 YPK_2624 e473a9e575f6fb3d87bfb9bc6308449d 154 Pfam PF02142 MGS-like domain 27 118 2.0E-18 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain YPK_2624 e473a9e575f6fb3d87bfb9bc6308449d 154 SUPERFAMILY SSF52335 6 150 7.59E-57 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YPK_2624 e473a9e575f6fb3d87bfb9bc6308449d 154 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 1.0E-64 T 12-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 YPK_2624 e473a9e575f6fb3d87bfb9bc6308449d 154 Gene3D G3DSA:3.40.50.1380 1 152 4.5E-67 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily YPK_2624 e473a9e575f6fb3d87bfb9bc6308449d 154 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 72 - T 12-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 YPK_2624 e473a9e575f6fb3d87bfb9bc6308449d 154 PIRSF PIRSF006614 8 151 1.4E-64 T 12-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 YPK_3691 5663bb336173ffa5ed230cc044a35e05 712 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 12-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site YPK_3691 5663bb336173ffa5ed230cc044a35e05 712 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 1.5E-203 T 12-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 YPK_3691 5663bb336173ffa5ed230cc044a35e05 712 Pfam PF03477 ATP cone domain 4 89 2.5E-19 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 YPK_3691 5663bb336173ffa5ed230cc044a35e05 712 SUPERFAMILY SSF51998 121 687 5.49E-192 T 12-10-2018 YPK_3691 5663bb336173ffa5ed230cc044a35e05 712 Gene3D G3DSA:3.20.70.20 121 687 9.9E-231 T 12-10-2018 YPK_3691 5663bb336173ffa5ed230cc044a35e05 712 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 2.5E-180 T 12-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 YPK_3479 f9cafba0b2e19296ef832cb6d033f5cc 181 SUPERFAMILY SSF53271 5 177 4.06E-55 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_3479 f9cafba0b2e19296ef832cb6d033f5cc 181 Pfam PF00156 Phosphoribosyl transferase domain 15 163 1.1E-24 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YPK_3479 f9cafba0b2e19296ef832cb6d033f5cc 181 Gene3D G3DSA:3.40.50.2020 2 180 1.0E-65 T 12-10-2018 YPK_3479 f9cafba0b2e19296ef832cb6d033f5cc 181 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 10 176 8.7E-74 T 12-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 YPK_1540 afd5a9953aee8dc9b34ecbb49c298b39 238 SUPERFAMILY SSF161098 17 214 1.96E-37 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1540 afd5a9953aee8dc9b34ecbb49c298b39 238 Gene3D G3DSA:1.10.3720.10 8 229 1.8E-42 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1540 afd5a9953aee8dc9b34ecbb49c298b39 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 227 7.7E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1540 afd5a9953aee8dc9b34ecbb49c298b39 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 1.7E-14 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_2869 1a1a76a8daafdd3458081c9627c122a1 232 Pfam PF00005 ABC transporter 17 161 3.0E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2869 1a1a76a8daafdd3458081c9627c122a1 232 Gene3D G3DSA:3.40.50.300 1 225 1.5E-58 T 12-10-2018 YPK_2869 1a1a76a8daafdd3458081c9627c122a1 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 1.1E-106 T 12-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE YPK_2869 1a1a76a8daafdd3458081c9627c122a1 232 SUPERFAMILY SSF52540 2 216 2.95E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2869 1a1a76a8daafdd3458081c9627c122a1 232 SMART SM00382 26 211 9.2E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 733 793 2.0E-29 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 804 0.0 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Pfam PF01751 Toprim domain 419 531 5.2E-18 T 12-10-2018 IPR006171 TOPRIM domain YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Gene3D G3DSA:3.30.565.10 1 220 3.4E-97 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 173 3.3E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Gene3D G3DSA:3.40.50.670 398 571 2.8E-74 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Gene3D G3DSA:3.30.230.10 221 392 3.8E-75 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Gene3D G3DSA:3.10.20.690 592 683 2.3E-36 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Gene3D G3DSA:3.40.50.670 706 802 6.4E-26 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 374 394 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 360 374 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 470 479 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 312 328 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 757 769 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 220 242 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 773 789 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR01159 DNA gyrase subunit B signature 5 15 1.6E-79 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 SUPERFAMILY SSF56719 394 795 1.12E-86 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 804 109.687 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 SMART SM00433 35 797 3.8E-281 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 SUPERFAMILY SSF55874 4 220 1.44E-77 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 487 503 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 113 127 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 505 522 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 525 537 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 70 83 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 268 281 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 35 50 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 736 752 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 PRINTS PR00418 DNA topoisomerase II family signature 420 434 1.9E-70 T 12-10-2018 YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 SUPERFAMILY SSF54211 221 392 3.79E-62 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 SMART SM00387 31 175 6.0E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0004 bfb0adbecd0385d3efae1ff0df1041a2 804 Pfam PF00204 DNA gyrase B 221 390 2.1E-59 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 380 399 2.6E-34 T 12-10-2018 IPR003004 GspF/PilC family YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 62 74 2.6E-34 T 12-10-2018 IPR003004 GspF/PilC family YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 161 189 2.6E-34 T 12-10-2018 IPR003004 GspF/PilC family YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 364 378 2.6E-34 T 12-10-2018 IPR003004 GspF/PilC family YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 161 189 - T 12-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 Gene3D G3DSA:1.20.81.30 53 170 6.3E-28 T 12-10-2018 YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 Pfam PF00482 Type II secretion system (T2SS), protein F 67 189 7.0E-29 T 12-10-2018 IPR018076 Type II secretion system F domain YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 Pfam PF00482 Type II secretion system (T2SS), protein F 269 389 2.8E-21 T 12-10-2018 IPR018076 Type II secretion system F domain YPK_1006 3ce174eb7a74d1178bd86493a4aa730e 400 Gene3D G3DSA:1.20.81.30 253 364 8.6E-22 T 12-10-2018 YPK_0541 ba7e5caf5ecac0ff03efa5948fed286b 234 Gene3D G3DSA:2.60.120.10 12 133 4.0E-36 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_0541 ba7e5caf5ecac0ff03efa5948fed286b 234 Pfam PF02678 Pirin 5 119 1.0E-21 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 YPK_0541 ba7e5caf5ecac0ff03efa5948fed286b 234 PIRSF PIRSF006232 1 231 9.4E-33 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 YPK_0541 ba7e5caf5ecac0ff03efa5948fed286b 234 SUPERFAMILY SSF51182 1 232 1.05E-46 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_0541 ba7e5caf5ecac0ff03efa5948fed286b 234 Gene3D G3DSA:2.60.120.10 134 234 2.8E-33 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_2600 5c8029e3e764a4574d8e45250e7af4db 166 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 8 158 9.4E-57 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_2600 5c8029e3e764a4574d8e45250e7af4db 166 PIRSF PIRSF028301 1 165 8.3E-56 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_2600 5c8029e3e764a4574d8e45250e7af4db 166 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 5 159 2.2E-53 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_0798 5c8029e3e764a4574d8e45250e7af4db 166 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 8 158 9.4E-57 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_0798 5c8029e3e764a4574d8e45250e7af4db 166 PIRSF PIRSF028301 1 165 8.3E-56 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_0798 5c8029e3e764a4574d8e45250e7af4db 166 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 5 159 2.2E-53 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 Gene3D G3DSA:3.30.70.20 28 229 4.0E-102 T 12-10-2018 YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 291 3.7E-142 T 12-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 SUPERFAMILY SSF54862 29 275 9.63E-70 T 12-10-2018 YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 Pfam PF09163 Formate dehydrogenase N, transmembrane 248 291 4.1E-23 T 12-10-2018 IPR015246 Formate dehydrogenase, transmembrane YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 Pfam PF13247 4Fe-4S dicluster domain 94 190 8.8E-25 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 Gene3D G3DSA:3.30.70.20 18 164 4.0E-102 T 12-10-2018 YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 135 146 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 Gene3D G3DSA:1.20.5.480 249 296 1.4E-26 T 12-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily YPK_0039 4bd4d7dd9822d8c2cd7d624ebc957273 323 PIRSF PIRSF036298 1 320 4.7E-168 T 12-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 Gene3D G3DSA:2.60.40.10 23 142 3.6E-44 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 99 116 - T 12-10-2018 IPR018046 Pili assembly chaperone, conserved site YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 70 91 1.4E-34 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 123 138 1.4E-34 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 24 33 1.4E-34 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 159 174 1.4E-34 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 PRINTS PR00969 Pili chaperone signature 100 117 1.4E-34 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 SUPERFAMILY SSF49584 148 234 3.92E-23 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 SUPERFAMILY SSF49354 24 141 3.92E-40 T 12-10-2018 IPR008962 PapD-like superfamily YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 165 222 4.7E-14 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 24 141 4.5E-40 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_0696 73e810269fa608afe3a6d9cf82bcea7d 239 Gene3D G3DSA:2.60.40.10 144 234 2.1E-24 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 Pfam PF08245 Mur ligase middle domain 133 313 3.4E-27 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 SUPERFAMILY SSF53623 114 331 1.7E-74 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 30 484 2.2E-182 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 Gene3D G3DSA:3.40.50.720 29 116 3.7E-34 T 12-10-2018 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 28 490 43.638 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 Gene3D G3DSA:3.40.1190.10 117 331 7.5E-88 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 Pfam PF02875 Mur ligase family, glutamate ligase domain 342 427 1.7E-20 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 Gene3D G3DSA:3.90.190.20 332 500 3.9E-52 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 SUPERFAMILY SSF51984 29 115 9.16E-29 T 12-10-2018 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 Pfam PF01225 Mur ligase family, catalytic domain 30 128 8.1E-30 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 YPK_3517 fac199cdce26f7210c025ec9fb91cb79 500 SUPERFAMILY SSF53244 332 486 2.38E-46 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_4232 4774785d802f587c2ffd76645fd8e9df 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 308 5.1E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_4232 4774785d802f587c2ffd76645fd8e9df 318 Gene3D G3DSA:1.10.3720.10 70 316 6.6E-33 T 12-10-2018 IPR035906 MetI-like superfamily YPK_4232 4774785d802f587c2ffd76645fd8e9df 318 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 18 311 2.0E-94 T 12-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 YPK_4232 4774785d802f587c2ffd76645fd8e9df 318 SUPERFAMILY SSF161098 28 304 4.58E-34 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0523 b0ecdea66e6b0863f31fe19c42a16941 375 SUPERFAMILY SSF52540 68 210 1.58E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0523 b0ecdea66e6b0863f31fe19c42a16941 375 Pfam PF03969 AFG1-like ATPase 6 370 4.9E-148 T 12-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 YPK_0523 b0ecdea66e6b0863f31fe19c42a16941 375 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 375 53.031 T 12-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 YPK_0523 b0ecdea66e6b0863f31fe19c42a16941 375 Gene3D G3DSA:3.40.50.300 23 197 4.6E-19 T 12-10-2018 YPK_3894 c7f8e49c6412caa942c5fcd4794c9b6e 393 SUPERFAMILY SSF53383 45 386 4.19E-82 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3894 c7f8e49c6412caa942c5fcd4794c9b6e 393 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 386 2.9E-94 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_3894 c7f8e49c6412caa942c5fcd4794c9b6e 393 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_3894 c7f8e49c6412caa942c5fcd4794c9b6e 393 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 13 388 2.0E-134 T 12-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 YPK_3894 c7f8e49c6412caa942c5fcd4794c9b6e 393 Gene3D G3DSA:3.90.1150.10 257 390 3.6E-35 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_3894 c7f8e49c6412caa942c5fcd4794c9b6e 393 Gene3D G3DSA:3.40.640.10 8 256 6.2E-62 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_3894 c7f8e49c6412caa942c5fcd4794c9b6e 393 PIRSF PIRSF001434 1 390 3.1E-106 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 YPK_4102 c9e3ee533a416d8313ddab81221f34f9 248 SUPERFAMILY SSF110997 174 243 3.14E-22 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YPK_4102 c9e3ee533a416d8313ddab81221f34f9 248 Pfam PF05036 Sporulation related domain 174 242 1.7E-19 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 YPK_4102 c9e3ee533a416d8313ddab81221f34f9 248 Gene3D G3DSA:3.30.70.1070 169 248 1.4E-31 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YPK_4102 c9e3ee533a416d8313ddab81221f34f9 248 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 242 3.2E-67 T 12-10-2018 IPR011930 Cell division protein FtsN GO:0005515 YPK_4102 c9e3ee533a416d8313ddab81221f34f9 248 Hamap MF_02039 Cell division protein FtsN [ftsN]. 1 248 33.831 T 12-10-2018 IPR011930 Cell division protein FtsN GO:0005515 YPK_3467 331f2d064917003f9ffae45a6bef91d5 293 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 50 283 56.151 T 12-10-2018 IPR005224 Sugar fermentation stimulation protein YPK_3467 331f2d064917003f9ffae45a6bef91d5 293 Gene3D G3DSA:2.40.50.580 50 129 1.2E-27 T 12-10-2018 YPK_3467 331f2d064917003f9ffae45a6bef91d5 293 Gene3D G3DSA:3.40.1350.60 130 283 4.8E-56 T 12-10-2018 YPK_3467 331f2d064917003f9ffae45a6bef91d5 293 Pfam PF03749 Sugar fermentation stimulation protein 63 275 2.7E-74 T 12-10-2018 IPR005224 Sugar fermentation stimulation protein YPK_3467 331f2d064917003f9ffae45a6bef91d5 293 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 53 281 1.4E-80 T 12-10-2018 IPR005224 Sugar fermentation stimulation protein YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 Gene3D G3DSA:3.40.50.300 2 250 1.4E-57 T 12-10-2018 YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 SUPERFAMILY SSF52540 12 236 5.52E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 Pfam PF00005 ABC transporter 29 178 3.8E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 Pfam PF00005 ABC transporter 280 434 5.6E-17 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 SMART SM00382 288 483 2.1 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 SMART SM00382 38 233 1.3E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 SUPERFAMILY SSF52540 254 494 7.17E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2565 93278ac40bb8894185f84ed4e38864c6 506 Gene3D G3DSA:3.40.50.300 251 503 1.1E-37 T 12-10-2018 YPK_2428 430dda5075112198f0b9261ad7d0b35b 146 Gene3D G3DSA:1.20.58.300 3 120 1.4E-13 T 12-10-2018 YPK_2428 430dda5075112198f0b9261ad7d0b35b 146 SUPERFAMILY SSF140566 2 120 1.2E-19 T 12-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 YPK_2428 430dda5075112198f0b9261ad7d0b35b 146 Pfam PF05130 FlgN protein 2 135 1.6E-26 T 12-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 YPK_1723 252d6e8fc421241b257bc9a14720b319 417 Gene3D G3DSA:3.40.718.10 1 417 3.1E-186 T 12-10-2018 YPK_1723 252d6e8fc421241b257bc9a14720b319 417 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 30 413 1.4E-116 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YPK_1723 252d6e8fc421241b257bc9a14720b319 417 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 417 1.8E-234 T 12-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 YPK_1723 252d6e8fc421241b257bc9a14720b319 417 SMART SM01329 29 413 1.3E-180 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YPK_1723 252d6e8fc421241b257bc9a14720b319 417 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 304 323 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 YPK_1723 252d6e8fc421241b257bc9a14720b319 417 SUPERFAMILY SSF53659 4 417 1.69E-148 T 12-10-2018 YPK_2438 aa91e2ee0e3d0f8cf2ec7e9f299e8fbb 169 Gene3D G3DSA:1.20.1260.10 1 168 4.0E-49 T 12-10-2018 IPR012347 Ferritin-like YPK_2438 aa91e2ee0e3d0f8cf2ec7e9f299e8fbb 169 Pfam PF00210 Ferritin-like domain 8 143 2.4E-40 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 YPK_2438 aa91e2ee0e3d0f8cf2ec7e9f299e8fbb 169 SUPERFAMILY SSF47240 1 159 1.39E-57 T 12-10-2018 IPR009078 Ferritin-like superfamily YPK_4064 83f29f6548ec01705871670b25a500e7 293 SUPERFAMILY SSF53850 90 283 4.34E-24 T 12-10-2018 YPK_4064 83f29f6548ec01705871670b25a500e7 293 Pfam PF03466 LysR substrate binding domain 88 279 1.2E-22 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_4064 83f29f6548ec01705871670b25a500e7 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.3E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4064 83f29f6548ec01705871670b25a500e7 293 Hamap MF_01233 HTH-type transcriptional regulator HdfR [hdfR]. 1 284 50.958 T 12-10-2018 IPR020890 Transcription regulator HTH, HdfR GO:0003677|GO:0003700|GO:0045892 YPK_4064 83f29f6548ec01705871670b25a500e7 293 Gene3D G3DSA:3.40.190.290 89 292 7.4E-15 T 12-10-2018 YPK_4064 83f29f6548ec01705871670b25a500e7 293 SUPERFAMILY SSF46785 2 81 6.93E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_4064 83f29f6548ec01705871670b25a500e7 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4064 83f29f6548ec01705871670b25a500e7 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4064 83f29f6548ec01705871670b25a500e7 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_4064 83f29f6548ec01705871670b25a500e7 293 Gene3D G3DSA:1.10.10.10 1 83 3.2E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2361 fde7dc77451ce80b1e9e96103bcd7328 474 PIRSF PIRSF006060 4 472 7.8E-68 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2361 fde7dc77451ce80b1e9e96103bcd7328 474 Gene3D G3DSA:1.20.1740.10 20 473 2.3E-59 T 12-10-2018 YPK_2361 fde7dc77451ce80b1e9e96103bcd7328 474 ProSitePatterns PS00218 Amino acid permeases signature. 55 85 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YPK_2361 fde7dc77451ce80b1e9e96103bcd7328 474 Pfam PF00324 Amino acid permease 30 467 7.4E-114 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YPK_0068 6d9a799f78b0f010de952ea4e8889ea8 252 Pfam PF00005 ABC transporter 17 164 5.6E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0068 6d9a799f78b0f010de952ea4e8889ea8 252 Gene3D G3DSA:3.40.50.300 1 251 9.6E-65 T 12-10-2018 YPK_0068 6d9a799f78b0f010de952ea4e8889ea8 252 SMART SM00382 26 213 3.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0068 6d9a799f78b0f010de952ea4e8889ea8 252 SUPERFAMILY SSF52540 1 225 8.26E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3403 d6171bd7c2f34ac5790a8bcc4ff156bd 498 PIRSF PIRSF000538 2 498 4.4E-76 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_3403 d6171bd7c2f34ac5790a8bcc4ff156bd 498 SUPERFAMILY SSF53067 4 255 1.02E-56 T 12-10-2018 YPK_3403 d6171bd7c2f34ac5790a8bcc4ff156bd 498 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 255 2.4E-64 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_3403 d6171bd7c2f34ac5790a8bcc4ff156bd 498 Gene3D G3DSA:3.30.420.40 249 498 6.7E-45 T 12-10-2018 YPK_3403 d6171bd7c2f34ac5790a8bcc4ff156bd 498 SUPERFAMILY SSF53067 259 496 1.53E-40 T 12-10-2018 YPK_3403 d6171bd7c2f34ac5790a8bcc4ff156bd 498 Gene3D G3DSA:3.30.420.40 1 247 6.7E-66 T 12-10-2018 YPK_3403 d6171bd7c2f34ac5790a8bcc4ff156bd 498 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 266 448 1.2E-16 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_0935 c7993e8a19ef8346fdde8a6b20608d88 96 Pfam PF10772 Protein of unknown function (DUF2597) 8 88 5.6E-32 T 12-10-2018 IPR019708 Bacteriophage HP1, Orf24 YPK_0742 ac6d12585a3e1f4dd2758bf0cacb0f7a 195 Gene3D G3DSA:2.60.40.3700 34 194 3.4E-64 T 12-10-2018 YPK_1487 b2fcd233094037d21a7538a09882c69c 86 Pfam PF05488 PAAR motif 8 76 7.8E-12 T 12-10-2018 IPR008727 PAAR motif YPK_1487 b2fcd233094037d21a7538a09882c69c 86 Gene3D G3DSA:2.60.200.60 2 85 2.7E-14 T 12-10-2018 YPK_1132 d763161ddb53676f0ebc72e6826f0da2 158 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 32 127 9.9E-41 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1132 d763161ddb53676f0ebc72e6826f0da2 158 Hamap MF_01954 Urease subunit beta [ureB]. 29 129 29.427 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1132 d763161ddb53676f0ebc72e6826f0da2 158 SUPERFAMILY SSF51278 32 132 1.44E-42 T 12-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1132 d763161ddb53676f0ebc72e6826f0da2 158 Pfam PF00699 Urease beta subunit 33 127 1.7E-40 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1132 d763161ddb53676f0ebc72e6826f0da2 158 Gene3D G3DSA:2.10.150.10 28 141 1.5E-49 T 12-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_4239 81ef87058f13a1bc5caaefe7ec54bbb7 251 Gene3D G3DSA:1.10.3720.10 22 225 2.3E-45 T 12-10-2018 IPR035906 MetI-like superfamily YPK_4239 81ef87058f13a1bc5caaefe7ec54bbb7 251 SUPERFAMILY SSF161098 22 209 2.22E-40 T 12-10-2018 IPR035906 MetI-like superfamily YPK_4239 81ef87058f13a1bc5caaefe7ec54bbb7 251 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 223 9.2E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_4239 81ef87058f13a1bc5caaefe7ec54bbb7 251 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 116 1.4E-16 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_0539 b2044f9e208d3d458deaefe2787f95da 657 Gene3D G3DSA:3.40.50.2300 460 644 9.0E-25 T 12-10-2018 YPK_0539 b2044f9e208d3d458deaefe2787f95da 657 Pfam PF04348 LppC putative lipoprotein 40 286 2.1E-53 T 12-10-2018 IPR007443 Penicillin-binding protein activator LpoA YPK_0539 b2044f9e208d3d458deaefe2787f95da 657 Pfam PF04348 LppC putative lipoprotein 329 651 2.6E-91 T 12-10-2018 IPR007443 Penicillin-binding protein activator LpoA YPK_0539 b2044f9e208d3d458deaefe2787f95da 657 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 6 651 37.355 T 12-10-2018 IPR007443 Penicillin-binding protein activator LpoA YPK_0539 b2044f9e208d3d458deaefe2787f95da 657 Gene3D G3DSA:1.25.40.650 148 255 2.4E-41 T 12-10-2018 YPK_0539 b2044f9e208d3d458deaefe2787f95da 657 SUPERFAMILY SSF53822 258 656 2.83E-79 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0539 b2044f9e208d3d458deaefe2787f95da 657 Gene3D G3DSA:1.25.40.10 24 147 1.1E-43 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 SUPERFAMILY SSF50249 3 69 1.49E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 PRINTS PR00050 Cold shock protein signature 43 61 6.3E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 PRINTS PR00050 Cold shock protein signature 7 22 6.3E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 PRINTS PR00050 Cold shock protein signature 28 37 6.3E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 SMART SM00357 6 70 3.3E-31 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 12-10-2018 IPR019844 Cold-shock conserved site YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 Gene3D G3DSA:2.40.50.140 2 69 4.4E-29 T 12-10-2018 YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.9E-32 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_1124 2a87be951f9f5e5360ee4d71855f0ca3 70 PIRSF PIRSF002599 1 70 2.1E-24 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_1479 6bdef33c6aa0d5b1946e5f96669a913f 174 PIRSF PIRSF028301 2 174 7.5E-61 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_1479 6bdef33c6aa0d5b1946e5f96669a913f 174 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 165 2.6E-59 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_1479 6bdef33c6aa0d5b1946e5f96669a913f 174 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 162 2.1E-57 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_1185 5c419e7d4e08e8222bd29d77452500e6 151 PIRSF PIRSF004923 1 150 8.8E-38 T 12-10-2018 IPR026268 Protein RseC YPK_1185 5c419e7d4e08e8222bd29d77452500e6 151 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 140 4.1E-35 T 12-10-2018 YPK_2460 d825063415ba041129c55627c878bc0a 254 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 245 2.2E-114 T 12-10-2018 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 YPK_2460 d825063415ba041129c55627c878bc0a 254 SUPERFAMILY SSF56529 38 245 1.7E-71 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_2460 d825063415ba041129c55627c878bc0a 254 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 47 243 1.3E-58 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 YPK_2460 d825063415ba041129c55627c878bc0a 254 Gene3D G3DSA:3.90.850.10 36 248 1.4E-74 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_3711 d88a11597133a46f8574c177414f24e7 672 Gene3D G3DSA:2.70.98.70 366 669 2.6E-40 T 12-10-2018 YPK_3711 d88a11597133a46f8574c177414f24e7 672 Gene3D G3DSA:1.50.10.100 59 352 1.5E-68 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YPK_3711 d88a11597133a46f8574c177414f24e7 672 SUPERFAMILY SSF48230 13 328 3.2E-35 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YPK_3711 d88a11597133a46f8574c177414f24e7 672 Pfam PF05426 Alginate lyase 101 267 1.1E-4 T 12-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 YPK_3711 d88a11597133a46f8574c177414f24e7 672 Pfam PF07940 Heparinase II/III-like protein 368 514 3.2E-19 T 12-10-2018 IPR012480 Heparinase II/III-like GO:0016829 YPK_1705 a1f00152dd38ddd23ae095932cda2cc1 179 Pfam PF05433 Glycine zipper 2TM domain 73 113 2.5E-10 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 Gene3D G3DSA:3.90.190.20 300 434 5.8E-44 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 Gene3D G3DSA:3.40.50.720 2 93 6.8E-26 T 12-10-2018 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 Pfam PF02875 Mur ligase family, glutamate ligase domain 301 355 9.5E-8 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 SUPERFAMILY SSF53623 95 297 1.23E-56 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 Gene3D G3DSA:3.40.1190.10 94 299 9.2E-80 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 SUPERFAMILY SSF53244 299 437 5.49E-48 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 Pfam PF08245 Mur ligase middle domain 110 280 1.0E-26 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 435 3.3E-123 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 SUPERFAMILY SSF51984 3 94 8.24E-25 T 12-10-2018 YPK_3520 ea9b08f20194492c606a6f8823cc88de 438 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 437 34.324 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_3117 8c62aa323a8cb4c1287e1627facf7676 468 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 21 120 6.0E-42 T 12-10-2018 IPR009826 DNA circulation, N-terminal YPK_3117 8c62aa323a8cb4c1287e1627facf7676 468 Pfam PF07157 DNA circularisation protein N-terminus 25 118 2.4E-33 T 12-10-2018 IPR009826 DNA circulation, N-terminal YPK_0184 b64428e0862ed30265b70b684afda8b4 189 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 9 187 1.1E-35 T 12-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 201 42.036 T 12-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 Gene3D G3DSA:3.40.630.20 1 215 3.3E-83 T 12-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 214 3.3E-89 T 12-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 Pfam PF01470 Pyroglutamyl peptidase 3 202 1.2E-82 T 12-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 5.1E-48 T 12-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 5.1E-48 T 12-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 5.1E-48 T 12-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 5.1E-48 T 12-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 162 174 5.1E-48 T 12-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 12-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 SUPERFAMILY SSF53182 1 214 3.53E-76 T 12-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 PIRSF PIRSF015592 1 213 1.8E-89 T 12-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 YPK_1172 120a5fe7ed04f57193b705dc207c94f9 215 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 12-10-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site MetaCyc: PWY-7942 YPK_3884 3dd3bf506c475b3de7ee269a88761137 266 SUPERFAMILY SSF51730 4 265 5.49E-50 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like YPK_3884 3dd3bf506c475b3de7ee269a88761137 266 Pfam PF02219 Methylenetetrahydrofolate reductase 4 265 2.8E-34 T 12-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 YPK_3884 3dd3bf506c475b3de7ee269a88761137 266 Gene3D G3DSA:3.20.20.220 1 266 9.3E-44 T 12-10-2018 YPK_2906 8fc4c9957ea6c2ad243d1153e51d087c 369 SUPERFAMILY SSF51395 1 365 3.67E-117 T 12-10-2018 YPK_2906 8fc4c9957ea6c2ad243d1153e51d087c 369 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 342 5.9E-90 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 YPK_2906 8fc4c9957ea6c2ad243d1153e51d087c 369 Gene3D G3DSA:3.20.20.70 1 369 5.3E-135 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1663 dc293d337f5e5041c0096c382e9655b0 110 Pfam PF07119 Protein of unknown function (DUF1375) 45 104 3.3E-7 T 12-10-2018 IPR010780 Protein of unknown function DUF1375 YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 Gene3D G3DSA:3.40.50.720 1 245 4.7E-72 T 12-10-2018 YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 SUPERFAMILY SSF51735 4 245 3.95E-72 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 6.5E-57 T 12-10-2018 YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 2.7E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 2.7E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 2.7E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 2.7E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 2.7E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.7E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 5.8E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 5.8E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2510 72d1924587f5db8d45dd9e04be969e07 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 5.8E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_1746 a4ba3816bf63c3aed1d7b29916a884a0 193 SUPERFAMILY SSF160930 5 161 8.11E-65 T 12-10-2018 YPK_1746 a4ba3816bf63c3aed1d7b29916a884a0 193 PIRSF PIRSF003159 1 182 1.5E-89 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 YPK_1746 a4ba3816bf63c3aed1d7b29916a884a0 193 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 1 193 4.0E-112 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 YPK_1746 a4ba3816bf63c3aed1d7b29916a884a0 193 Pfam PF05280 Flagellar transcriptional activator (FlhC) 1 173 8.5E-83 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 YPK_1746 a4ba3816bf63c3aed1d7b29916a884a0 193 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 1 187 46.077 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 2.4E-111 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 Gene3D G3DSA:3.40.1380.10 61 206 5.0E-112 T 12-10-2018 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 SUPERFAMILY SSF52943 2 287 2.62E-96 T 12-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 Gene3D G3DSA:1.10.287.80 6 283 5.0E-112 T 12-10-2018 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.354 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 12-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 Pfam PF00231 ATP synthase 5 286 9.1E-96 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 3.4E-38 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 3.4E-38 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 3.4E-38 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_4225 a9cce7d7037e16779cdf890fcf49d618 287 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 3.4E-38 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 YPK_2257 02e78e0b07e4c218c80489b04f40c554 394 Pfam PF00155 Aminotransferase class I and II 55 383 1.4E-27 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_2257 02e78e0b07e4c218c80489b04f40c554 394 Gene3D G3DSA:3.40.640.10 63 284 9.0E-103 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2257 02e78e0b07e4c218c80489b04f40c554 394 SUPERFAMILY SSF53383 7 393 5.89E-81 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2257 02e78e0b07e4c218c80489b04f40c554 394 Gene3D G3DSA:3.90.1150.10 22 387 9.0E-103 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_0602 3ba79fbf1de11b586dcdce66cba0ce20 210 Pfam PF13309 HTH domain 148 210 7.9E-20 T 12-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain YPK_0602 3ba79fbf1de11b586dcdce66cba0ce20 210 Pfam PF08348 YheO-like PAS domain 8 120 1.8E-39 T 12-10-2018 IPR013559 YheO-like YPK_0602 3ba79fbf1de11b586dcdce66cba0ce20 210 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 3 112 3.0E-60 T 12-10-2018 IPR013559 YheO-like YPK_1889 5434025266aa6f9bb2a6796872f44c09 330 SMART SM00382 32 235 1.6E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1889 5434025266aa6f9bb2a6796872f44c09 330 Gene3D G3DSA:3.40.50.300 2 329 6.3E-75 T 12-10-2018 YPK_1889 5434025266aa6f9bb2a6796872f44c09 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 2.4E-20 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_1889 5434025266aa6f9bb2a6796872f44c09 330 SUPERFAMILY SSF52540 3 266 1.96E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1889 5434025266aa6f9bb2a6796872f44c09 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 3.6E-16 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_1889 5434025266aa6f9bb2a6796872f44c09 330 Pfam PF00005 ABC transporter 24 187 1.1E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1444 93073811fce8a5b3985d266f1434d9c1 323 Gene3D G3DSA:3.40.367.20 100 299 9.6E-119 T 12-10-2018 YPK_1444 93073811fce8a5b3985d266f1434d9c1 323 Gene3D G3DSA:3.30.420.40 6 308 9.6E-119 T 12-10-2018 YPK_1444 93073811fce8a5b3985d266f1434d9c1 323 Pfam PF02685 Glucokinase 6 315 2.3E-126 T 12-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 YPK_1444 93073811fce8a5b3985d266f1434d9c1 323 SUPERFAMILY SSF53067 4 318 1.02E-64 T 12-10-2018 YPK_1444 93073811fce8a5b3985d266f1434d9c1 323 TIGRFAM TIGR00749 glk: glucokinase 6 310 7.1E-139 T 12-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 YPK_1444 93073811fce8a5b3985d266f1434d9c1 323 Hamap MF_00524 Glucokinase [glk]. 4 316 36.055 T 12-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 YPK_1857 8c8dae330588a29dedbb322508d12bab 218 Pfam PF00677 Lumazine binding domain 100 185 2.1E-21 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_1857 8c8dae330588a29dedbb322508d12bab 218 Pfam PF00677 Lumazine binding domain 3 87 7.2E-22 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_1857 8c8dae330588a29dedbb322508d12bab 218 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 3.3E-83 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_1857 8c8dae330588a29dedbb322508d12bab 218 Gene3D G3DSA:2.40.30.20 1 89 2.2E-32 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_1857 8c8dae330588a29dedbb322508d12bab 218 Gene3D G3DSA:2.40.30.20 94 191 1.2E-28 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_1857 8c8dae330588a29dedbb322508d12bab 218 SUPERFAMILY SSF63380 93 199 3.83E-32 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_1857 8c8dae330588a29dedbb322508d12bab 218 PIRSF PIRSF000498 1 212 8.8E-75 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_1857 8c8dae330588a29dedbb322508d12bab 218 SUPERFAMILY SSF63380 1 93 2.21E-28 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_3809 c5f046db7128b2ea4f0c810acf33dc2b 350 Gene3D G3DSA:2.40.50.140 34 101 2.8E-26 T 12-10-2018 YPK_3809 c5f046db7128b2ea4f0c810acf33dc2b 350 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 72 334 1.9E-92 T 12-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 YPK_3809 c5f046db7128b2ea4f0c810acf33dc2b 350 Gene3D G3DSA:1.10.40.50 276 349 2.8E-28 T 12-10-2018 YPK_3809 c5f046db7128b2ea4f0c810acf33dc2b 350 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 39 340 37.237 T 12-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 YPK_3809 c5f046db7128b2ea4f0c810acf33dc2b 350 Gene3D G3DSA:3.40.50.300 102 275 2.2E-47 T 12-10-2018 YPK_3809 c5f046db7128b2ea4f0c810acf33dc2b 350 SUPERFAMILY SSF52540 113 340 5.74E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3809 c5f046db7128b2ea4f0c810acf33dc2b 350 Pfam PF03193 RsgA GTPase 99 276 2.4E-54 T 12-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 YPK_2814 259a24e82ed9944d1db63e3d42e4dba4 351 Gene3D G3DSA:3.30.1920.10 199 280 2.3E-92 T 12-10-2018 IPR023399 Baseplate-like, two-layer sandwich fold YPK_2814 259a24e82ed9944d1db63e3d42e4dba4 351 SUPERFAMILY SSF69279 176 349 4.59E-42 T 12-10-2018 YPK_2814 259a24e82ed9944d1db63e3d42e4dba4 351 Pfam PF05954 Phage late control gene D protein (GPD) 26 324 6.5E-16 T 12-10-2018 YPK_2814 259a24e82ed9944d1db63e3d42e4dba4 351 PIRSF PIRSF004440 1 351 2.3E-67 T 12-10-2018 IPR026276 Baseplate protein GpP YPK_2814 259a24e82ed9944d1db63e3d42e4dba4 351 Gene3D G3DSA:3.55.50.10 91 175 2.3E-92 T 12-10-2018 YPK_2814 259a24e82ed9944d1db63e3d42e4dba4 351 SUPERFAMILY SSF69279 1 175 1.36E-51 T 12-10-2018 YPK_2814 259a24e82ed9944d1db63e3d42e4dba4 351 Gene3D G3DSA:2.30.300.10 7 340 2.3E-92 T 12-10-2018 YPK_4192 81b28954565799b38ad25cc3f949d446 457 Pfam PF04055 Radical SAM superfamily 57 226 3.1E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_4192 81b28954565799b38ad25cc3f949d446 457 PIRSF PIRSF000167 4 454 6.5E-174 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 YPK_4192 81b28954565799b38ad25cc3f949d446 457 Gene3D G3DSA:1.10.10.920 364 457 2.3E-36 T 12-10-2018 YPK_4192 81b28954565799b38ad25cc3f949d446 457 SUPERFAMILY SSF102114 6 444 7.98E-146 T 12-10-2018 YPK_4192 81b28954565799b38ad25cc3f949d446 457 Pfam PF06969 HemN C-terminal domain 364 431 1.6E-11 T 12-10-2018 IPR010723 HemN, C-terminal YPK_4192 81b28954565799b38ad25cc3f949d446 457 Gene3D G3DSA:3.80.30.20 1 363 2.8E-138 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YPK_4192 81b28954565799b38ad25cc3f949d446 457 SMART SM00729 52 272 3.7E-54 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_4192 81b28954565799b38ad25cc3f949d446 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 457 7.6E-219 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 1.4E-45 T 12-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 2.3E-51 T 12-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 59.859 T 12-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 PIRSF PIRSF000102 1 310 3.4E-60 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 SUPERFAMILY SSF56327 146 311 8.65E-43 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 SUPERFAMILY SSF51735 1 145 5.31E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 Gene3D G3DSA:3.40.50.720 1 146 6.6E-64 T 12-10-2018 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 9.8E-137 T 12-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 Gene3D G3DSA:3.90.110.10 147 312 1.2E-55 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 YPK_3761 0bf707f17b3a3a3db68d6ed5f586e754 312 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 12-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 YPK_1613 63ed43e22b727223831b8f18a32585b9 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 321 8.5E-52 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_3485 f0ff695479fea9cad725767a8479df67 295 SUPERFAMILY SSF103481 45 139 1.44E-7 T 12-10-2018 YPK_3485 f0ff695479fea9cad725767a8479df67 295 SUPERFAMILY SSF103481 188 289 2.22E-12 T 12-10-2018 YPK_3485 f0ff695479fea9cad725767a8479df67 295 Pfam PF00892 EamA-like transporter family 157 284 5.4E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1727 09e0a2a77a8d9f8cb8a4dbd00cdb53ae 285 Pfam PF05368 NmrA-like family 2 220 6.6E-24 T 12-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 YPK_1727 09e0a2a77a8d9f8cb8a4dbd00cdb53ae 285 Gene3D G3DSA:3.40.50.720 3 267 4.6E-91 T 12-10-2018 YPK_1727 09e0a2a77a8d9f8cb8a4dbd00cdb53ae 285 Gene3D G3DSA:3.90.25.10 137 269 4.6E-91 T 12-10-2018 YPK_1727 09e0a2a77a8d9f8cb8a4dbd00cdb53ae 285 SUPERFAMILY SSF51735 2 245 4.0E-63 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0567 aacb4e84d4ea0ba8c4e650bb5e1b29b6 346 SMART SM00327 3 180 5.3E-18 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_0567 aacb4e84d4ea0ba8c4e650bb5e1b29b6 346 Pfam PF15616 TerY-C metal binding domain 217 346 1.7E-53 T 12-10-2018 IPR028274 TerY-C metal binding domain YPK_0567 aacb4e84d4ea0ba8c4e650bb5e1b29b6 346 SUPERFAMILY SSF53300 5 179 1.53E-24 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_0567 aacb4e84d4ea0ba8c4e650bb5e1b29b6 346 Pfam PF00092 von Willebrand factor type A domain 6 170 5.6E-14 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_0567 aacb4e84d4ea0ba8c4e650bb5e1b29b6 346 Gene3D G3DSA:3.40.50.410 2 181 9.4E-23 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 PIRSF PIRSF000398 1 271 3.5E-63 T 12-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 Gene3D G3DSA:1.10.1020.10 57 156 4.9E-85 T 12-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 Gene3D G3DSA:3.40.50.150 7 239 4.9E-85 T 12-10-2018 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 1.7E-18 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 1.7E-18 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 1.7E-18 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 1.7E-18 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 SUPERFAMILY SSF53335 5 269 3.06E-70 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 269 2.4E-93 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0228 a385d9919fb510604bdd45c6141cf83a 271 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 253 1.6E-74 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0855 1a06d140af85fa250d8e09f2c43f141c 205 Pfam PF01810 LysE type translocator 14 202 9.9E-49 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YPK_0855 1a06d140af85fa250d8e09f2c43f141c 205 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 2.6E-66 T 12-10-2018 IPR004777 L-lysine exporter/arginine exporter GO:0016021 YPK_0855 1a06d140af85fa250d8e09f2c43f141c 205 Hamap MF_01901 Arginine exporter protein ArgO [argO]. 1 205 38.017 T 12-10-2018 IPR023445 Arginine exporter protein ArgO, enterobacteria GO:0015181|GO:0015809 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 SMART SM00411 1 91 2.7E-41 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 5.9E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 5.9E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 5.9E-19 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 SUPERFAMILY SSF47729 1 91 3.83E-29 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 5.0E-29 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.373 T 12-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 2.5E-51 T 12-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 Gene3D G3DSA:4.10.520.10 40 94 1.3E-33 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_2667 cd62ff6e78886be13899a872c9395e47 94 Gene3D G3DSA:4.10.520.10 2 39 2.2E-16 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 YPK_3339 a384938b7c56d3ed275f31e424c2f0d0 511 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 497 4.3E-208 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 YPK_3339 a384938b7c56d3ed275f31e424c2f0d0 511 Pfam PF07690 Major Facilitator Superfamily 18 412 5.4E-55 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3339 a384938b7c56d3ed275f31e424c2f0d0 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 6.9E-5 T 12-10-2018 YPK_3339 a384938b7c56d3ed275f31e424c2f0d0 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 6.9E-5 T 12-10-2018 YPK_3339 a384938b7c56d3ed275f31e424c2f0d0 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 108 128 6.9E-5 T 12-10-2018 YPK_3339 a384938b7c56d3ed275f31e424c2f0d0 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 6.9E-5 T 12-10-2018 YPK_3339 a384938b7c56d3ed275f31e424c2f0d0 511 SUPERFAMILY SSF103473 10 499 2.49E-72 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3339 a384938b7c56d3ed275f31e424c2f0d0 511 Gene3D G3DSA:1.20.1720.10 14 219 2.4E-47 T 12-10-2018 YPK_3114 7f0b02bd154db2a197d3cea5239b9f66 145 Pfam PF07409 Phage protein GP46 30 141 8.8E-40 T 12-10-2018 IPR010877 Bacteriophage Mu, Gp46 YPK_0146 2591140879f43e302f6274a3a75e0fd4 565 Gene3D G3DSA:3.30.565.10 425 559 4.0E-13 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0146 2591140879f43e302f6274a3a75e0fd4 565 Pfam PF06580 Histidine kinase 373 450 3.4E-25 T 12-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 YPK_0146 2591140879f43e302f6274a3a75e0fd4 565 SUPERFAMILY SSF55874 426 558 4.11E-14 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0146 2591140879f43e302f6274a3a75e0fd4 565 Pfam PF07694 5TMR of 5TMR-LYT 30 198 1.4E-58 T 12-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 YPK_0146 2591140879f43e302f6274a3a75e0fd4 565 SUPERFAMILY SSF55781 236 357 4.41E-5 T 12-10-2018 YPK_4041 71fd694154d9114cdbd10d77c6a57fcd 263 Pfam PF05096 Glutamine cyclotransferase 27 259 2.0E-89 T 12-10-2018 IPR007788 Glutaminyl-peptide cyclotransferase GO:0016603|GO:0017186 MetaCyc: PWY-7942 YPK_4041 71fd694154d9114cdbd10d77c6a57fcd 263 SUPERFAMILY SSF50969 27 255 1.29E-22 T 12-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like YPK_4041 71fd694154d9114cdbd10d77c6a57fcd 263 Gene3D G3DSA:2.130.10.10 29 254 2.5E-8 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 YPK_0891 46045668669aff1ce6fc12021af5c7bb 334 SUPERFAMILY SSF52402 14 231 1.93E-25 T 12-10-2018 YPK_0891 46045668669aff1ce6fc12021af5c7bb 334 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 13 236 2.3E-49 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 YPK_1574 c30b1dfab3c434c887134943e35e1911 155 Gene3D G3DSA:2.60.120.370 1 155 2.0E-39 T 12-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily YPK_1574 c30b1dfab3c434c887134943e35e1911 155 SUPERFAMILY SSF51197 1 154 3.84E-41 T 12-10-2018 YPK_1574 c30b1dfab3c434c887134943e35e1911 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 154 6.8E-36 T 12-10-2018 IPR004375 YhcH/YjgK/YiaL family YPK_1574 c30b1dfab3c434c887134943e35e1911 155 Pfam PF04074 Domain of unknown function (DUF386) 1 150 1.5E-38 T 12-10-2018 IPR004375 YhcH/YjgK/YiaL family YPK_2769 bc3e7162e25d29c349531928153f68da 236 Gene3D G3DSA:3.40.50.1360 1 134 1.1E-43 T 12-10-2018 YPK_2769 bc3e7162e25d29c349531928153f68da 236 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 54 228 4.1E-58 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YPK_2769 bc3e7162e25d29c349531928153f68da 236 SUPERFAMILY SSF100950 4 151 4.61E-42 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_2769 bc3e7162e25d29c349531928153f68da 236 SUPERFAMILY SSF75445 131 215 1.57E-20 T 12-10-2018 YPK_2769 bc3e7162e25d29c349531928153f68da 236 Gene3D G3DSA:3.30.70.260 135 213 1.1E-27 T 12-10-2018 YPK_2769 bc3e7162e25d29c349531928153f68da 236 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 10 230 1.2E-81 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YPK_2769 bc3e7162e25d29c349531928153f68da 236 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 5 233 29.964 T 12-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 YPK_0101 e34e7f18596d8460cd6e10c838b795f1 314 Gene3D G3DSA:3.40.1190.20 1 312 4.1E-87 T 12-10-2018 IPR029056 Ribokinase-like YPK_0101 e34e7f18596d8460cd6e10c838b795f1 314 Pfam PF00294 pfkB family carbohydrate kinase 4 308 2.3E-68 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_0101 e34e7f18596d8460cd6e10c838b795f1 314 SUPERFAMILY SSF53613 1 307 2.65E-73 T 12-10-2018 IPR029056 Ribokinase-like YPK_0101 e34e7f18596d8460cd6e10c838b795f1 314 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 262 275 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YPK_1943 c0da8f83ed281e78bca5f5383e257fb3 318 Pfam PF00582 Universal stress protein family 4 146 6.5E-19 T 12-10-2018 IPR006016 UspA YPK_1943 c0da8f83ed281e78bca5f5383e257fb3 318 Pfam PF00582 Universal stress protein family 174 300 1.1E-12 T 12-10-2018 IPR006016 UspA YPK_1943 c0da8f83ed281e78bca5f5383e257fb3 318 Gene3D G3DSA:3.40.50.12370 1 315 6.5E-131 T 12-10-2018 YPK_1943 c0da8f83ed281e78bca5f5383e257fb3 318 SUPERFAMILY SSF52402 4 152 7.87E-28 T 12-10-2018 YPK_1943 c0da8f83ed281e78bca5f5383e257fb3 318 SUPERFAMILY SSF52402 156 305 5.11E-24 T 12-10-2018 YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 PIRSF PIRSF004692 17 357 4.4E-135 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 Gene3D G3DSA:3.10.580.10 230 354 1.7E-47 T 12-10-2018 YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 79 347 2.7E-122 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 SMART SM00116 309 356 1.9 T 12-10-2018 IPR000644 CBS domain YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 SMART SM00116 244 292 1.2 T 12-10-2018 IPR000644 CBS domain YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 SUPERFAMILY SSF53697 43 354 2.45E-66 T 12-10-2018 YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 Pfam PF00571 CBS domain 303 354 1.9E-6 T 12-10-2018 IPR000644 CBS domain YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 Pfam PF00571 CBS domain 235 290 1.9E-7 T 12-10-2018 IPR000644 CBS domain YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 Gene3D G3DSA:3.40.50.10490 40 229 3.6E-64 T 12-10-2018 YPK_0510 db1564a4363d856c5731ddb0de60dfc1 357 Pfam PF01380 SIS domain 75 206 4.5E-30 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_2277 93adf35993398ad59a866590a5a8331c 380 Gene3D G3DSA:2.40.50.140 295 351 3.3E-26 T 12-10-2018 YPK_2277 93adf35993398ad59a866590a5a8331c 380 SUPERFAMILY SSF50331 243 363 3.19E-27 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_2277 93adf35993398ad59a866590a5a8331c 380 Pfam PF08402 TOBE domain 288 359 1.3E-11 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_2277 93adf35993398ad59a866590a5a8331c 380 SMART SM00382 28 211 1.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2277 93adf35993398ad59a866590a5a8331c 380 Pfam PF00005 ABC transporter 20 161 9.4E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2277 93adf35993398ad59a866590a5a8331c 380 Gene3D G3DSA:2.40.50.100 247 368 3.3E-26 T 12-10-2018 YPK_2277 93adf35993398ad59a866590a5a8331c 380 SUPERFAMILY SSF52540 4 249 1.08E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2277 93adf35993398ad59a866590a5a8331c 380 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2277 93adf35993398ad59a866590a5a8331c 380 Gene3D G3DSA:3.40.50.300 1 245 1.8E-68 T 12-10-2018 YPK_2970 c9d089ca7f028fda207b61052653c369 588 Gene3D G3DSA:3.50.50.60 9 416 8.9E-172 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2970 c9d089ca7f028fda207b61052653c369 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 4.3E-242 T 12-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2970 c9d089ca7f028fda207b61052653c369 588 SUPERFAMILY SSF56425 236 356 6.58E-42 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2970 c9d089ca7f028fda207b61052653c369 588 PIRSF PIRSF000171 1 580 1.9E-46 T 12-10-2018 YPK_2970 c9d089ca7f028fda207b61052653c369 588 Pfam PF00890 FAD binding domain 9 405 4.0E-117 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2970 c9d089ca7f028fda207b61052653c369 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 12-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2970 c9d089ca7f028fda207b61052653c369 588 SUPERFAMILY SSF46977 452 588 9.29E-45 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2970 c9d089ca7f028fda207b61052653c369 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 1.2E-34 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2970 c9d089ca7f028fda207b61052653c369 588 Gene3D G3DSA:1.20.58.100 431 547 1.6E-39 T 12-10-2018 YPK_2970 c9d089ca7f028fda207b61052653c369 588 Gene3D G3DSA:4.10.80.40 548 588 8.2E-25 T 12-10-2018 YPK_2970 c9d089ca7f028fda207b61052653c369 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 7.0E-5 T 12-10-2018 YPK_2970 c9d089ca7f028fda207b61052653c369 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 7.0E-5 T 12-10-2018 YPK_2970 c9d089ca7f028fda207b61052653c369 588 Gene3D G3DSA:3.90.700.10 246 350 8.9E-172 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2970 c9d089ca7f028fda207b61052653c369 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 5.8E-276 T 12-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2970 c9d089ca7f028fda207b61052653c369 588 SUPERFAMILY SSF51905 5 438 1.87E-77 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 SMART SM00342 172 254 2.2E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 Gene3D G3DSA:1.10.10.60 152 258 1.5E-21 T 12-10-2018 YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 Pfam PF12833 Helix-turn-helix domain 178 255 6.7E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 SUPERFAMILY SSF51182 16 154 1.01E-14 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 Pfam PF02311 AraC-like ligand binding domain 25 134 1.4E-8 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 3.5E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 3.5E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 207 250 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 Gene3D G3DSA:2.60.120.10 9 92 6.8E-9 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1526 fd3b9bfa1ee2834a40ba8db5439d904b 261 SUPERFAMILY SSF46689 208 256 3.36E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0166 d0346e7fedfbc017499471a4b06034e8 89 Pfam PF07338 Protein of unknown function (DUF1471) 36 89 3.3E-21 T 12-10-2018 IPR010854 Domain of unknown function DUF1471 YPK_0166 d0346e7fedfbc017499471a4b06034e8 89 Gene3D G3DSA:3.30.1660.10 26 89 7.9E-26 T 12-10-2018 IPR025543 Dodecin-like YPK_0166 d0346e7fedfbc017499471a4b06034e8 89 SUPERFAMILY SSF159871 3 89 2.35E-24 T 12-10-2018 IPR036275 YdgH-like superfamily YPK_3344 5c1205d3fde467574b8f23b0206901b6 451 PIRSF PIRSF000850 1 451 1.1E-261 T 12-10-2018 YPK_3344 5c1205d3fde467574b8f23b0206901b6 451 SMART SM00155 352 379 0.0025 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YPK_3344 5c1205d3fde467574b8f23b0206901b6 451 SMART SM00155 133 159 0.0049 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 YPK_3344 5c1205d3fde467574b8f23b0206901b6 451 Gene3D G3DSA:3.30.870.10 18 447 5.4E-176 T 12-10-2018 YPK_3344 5c1205d3fde467574b8f23b0206901b6 451 Pfam PF13091 PLD-like domain 257 402 3.0E-21 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 YPK_3344 5c1205d3fde467574b8f23b0206901b6 451 SUPERFAMILY SSF56024 254 393 3.11E-18 T 12-10-2018 YPK_3344 5c1205d3fde467574b8f23b0206901b6 451 SUPERFAMILY SSF56024 10 211 3.77E-27 T 12-10-2018 YPK_3344 5c1205d3fde467574b8f23b0206901b6 451 Gene3D G3DSA:3.30.870.10 24 232 5.4E-176 T 12-10-2018 YPK_4138 75b036a4a4126578e953652e051d25b3 158 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 5 146 3.5E-69 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YPK_4138 75b036a4a4126578e953652e051d25b3 158 Gene3D G3DSA:3.10.420.10 1 152 1.0E-62 T 12-10-2018 IPR035958 SecB-like superfamily YPK_4138 75b036a4a4126578e953652e051d25b3 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 1.7E-41 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YPK_4138 75b036a4a4126578e953652e051d25b3 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 1.7E-41 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YPK_4138 75b036a4a4126578e953652e051d25b3 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 1.7E-41 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YPK_4138 75b036a4a4126578e953652e051d25b3 158 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 1.7E-41 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YPK_4138 75b036a4a4126578e953652e051d25b3 158 SUPERFAMILY SSF54611 2 141 2.4E-53 T 12-10-2018 IPR035958 SecB-like superfamily YPK_4138 75b036a4a4126578e953652e051d25b3 158 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.658 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YPK_4138 75b036a4a4126578e953652e051d25b3 158 Pfam PF02556 Preprotein translocase subunit SecB 5 144 1.5E-57 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 SMART SM00304 158 210 1.1E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 4.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 4.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 4.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 4.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 SUPERFAMILY SSF47384 194 271 1.49E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 Gene3D G3DSA:1.10.287.130 162 272 4.8E-20 T 12-10-2018 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 SMART SM00388 211 271 2.1E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 Pfam PF00672 HAMP domain 164 206 8.1E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 SUPERFAMILY SSF55874 260 423 9.82E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1936 561efc6a11676460f5d476972d0b36c5 434 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 270 3.0E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_1936 561efc6a11676460f5d476972d0b36c5 434 SMART SM00387 315 425 2.5E-34 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1936 561efc6a11676460f5d476972d0b36c5 434 Gene3D G3DSA:3.30.565.10 277 425 1.1E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1936 561efc6a11676460f5d476972d0b36c5 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 422 1.3E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_1068 1da0de38868595c37a500222ecedbddd 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 44.036 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 YPK_1068 1da0de38868595c37a500222ecedbddd 241 SUPERFAMILY SSF53633 7 239 6.28E-73 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_1068 1da0de38868595c37a500222ecedbddd 241 Pfam PF00696 Amino acid kinase family 11 219 9.0E-28 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YPK_1068 1da0de38868595c37a500222ecedbddd 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 239 3.4E-104 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 YPK_1068 1da0de38868595c37a500222ecedbddd 241 PIRSF PIRSF005650 4 241 2.8E-90 T 12-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 YPK_1068 1da0de38868595c37a500222ecedbddd 241 Gene3D G3DSA:3.40.1160.10 3 241 9.8E-76 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_3699 7633da946a8a9f990156d7dd2eb2df16 239 Pfam PF00005 ABC transporter 28 182 3.0E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3699 7633da946a8a9f990156d7dd2eb2df16 239 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 6 227 4.8E-109 T 12-10-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_3699 7633da946a8a9f990156d7dd2eb2df16 239 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3699 7633da946a8a9f990156d7dd2eb2df16 239 SMART SM00382 37 230 1.2E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3699 7633da946a8a9f990156d7dd2eb2df16 239 SUPERFAMILY SSF52540 6 227 2.01E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3699 7633da946a8a9f990156d7dd2eb2df16 239 Gene3D G3DSA:3.40.50.300 5 233 6.3E-49 T 12-10-2018 YPK_1463 f1c5f26c42d750cb4a4fc0144d0a7e9f 339 Gene3D G3DSA:3.40.190.10 128 314 1.2E-107 T 12-10-2018 YPK_1463 f1c5f26c42d750cb4a4fc0144d0a7e9f 339 Pfam PF13343 Bacterial extracellular solute-binding protein 81 309 2.8E-27 T 12-10-2018 YPK_1463 f1c5f26c42d750cb4a4fc0144d0a7e9f 339 Gene3D G3DSA:3.40.190.10 35 309 1.2E-107 T 12-10-2018 YPK_1463 f1c5f26c42d750cb4a4fc0144d0a7e9f 339 SUPERFAMILY SSF53850 33 332 8.16E-73 T 12-10-2018 YPK_1463 f1c5f26c42d750cb4a4fc0144d0a7e9f 339 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 126 143 - T 12-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 YPK_1463 f1c5f26c42d750cb4a4fc0144d0a7e9f 339 PIRSF PIRSF002825 7 339 6.9E-81 T 12-10-2018 IPR026045 Ferric binding protein YPK_0694 31f4b7eb7b7dfceeec6a5a36472ac9d6 176 Pfam PF00419 Fimbrial protein 32 175 8.5E-16 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_0694 31f4b7eb7b7dfceeec6a5a36472ac9d6 176 SUPERFAMILY SSF49401 30 176 2.44E-36 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_0694 31f4b7eb7b7dfceeec6a5a36472ac9d6 176 Gene3D G3DSA:2.60.40.1090 30 175 3.6E-35 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_1522 31f4b7eb7b7dfceeec6a5a36472ac9d6 176 Pfam PF00419 Fimbrial protein 32 175 8.5E-16 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_1522 31f4b7eb7b7dfceeec6a5a36472ac9d6 176 SUPERFAMILY SSF49401 30 176 2.44E-36 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_1522 31f4b7eb7b7dfceeec6a5a36472ac9d6 176 Gene3D G3DSA:2.60.40.1090 30 175 3.6E-35 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 Gene3D G3DSA:3.10.50.40 283 385 7.3E-86 T 12-10-2018 YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 Pfam PF00639 PPIC-type PPIASE domain 289 381 7.0E-26 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 Pfam PF00639 PPIC-type PPIASE domain 178 272 2.2E-20 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 Gene3D G3DSA:1.10.4030.10 21 148 7.2E-44 T 12-10-2018 YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 Pfam PF09312 SurA N-terminal domain 25 142 7.3E-47 T 12-10-2018 IPR015391 SurA N-terminal YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.262 T 12-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 SUPERFAMILY SSF54534 283 385 4.51E-33 T 12-10-2018 YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 SUPERFAMILY SSF109998 25 201 2.55E-44 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 Gene3D G3DSA:3.10.50.40 175 386 7.3E-86 T 12-10-2018 YPK_3571 32cf6c1eb1c0e70cce4cb283af51166d 434 SUPERFAMILY SSF54534 173 277 3.27E-28 T 12-10-2018 YPK_3759 195d794af91b38c8fec2ecbe19502dba 115 SUPERFAMILY SSF46955 3 74 1.46E-23 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_3759 195d794af91b38c8fec2ecbe19502dba 115 Gene3D G3DSA:1.10.10.10 2 74 1.6E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3759 195d794af91b38c8fec2ecbe19502dba 115 Pfam PF02316 Mu DNA-binding domain 9 61 8.5E-14 T 12-10-2018 IPR003314 Mu-type HTH domain GO:0003677 YPK_2795 a73d7a4ae17e4e339f01d3b3e5722fce 94 SUPERFAMILY SSF50715 1 94 1.92E-29 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2795 a73d7a4ae17e4e339f01d3b3e5722fce 94 Pfam PF01386 Ribosomal L25p family 4 91 7.8E-23 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 YPK_2795 a73d7a4ae17e4e339f01d3b3e5722fce 94 Gene3D G3DSA:2.40.240.10 1 94 1.5E-32 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 YPK_2795 a73d7a4ae17e4e339f01d3b3e5722fce 94 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 94 26.652 T 12-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 YPK_2795 a73d7a4ae17e4e339f01d3b3e5722fce 94 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 94 2.0E-45 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 YPK_3086 3907d7aac0dee7b87ffd03ddef3786e0 81 Gene3D G3DSA:1.25.40.590 27 80 1.9E-5 T 12-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 733 760 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 Gene3D G3DSA:3.40.228.10 348 418 4.8E-18 T 12-10-2018 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 Gene3D G3DSA:3.40.50.740 56 324 7.3E-86 T 12-10-2018 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 SMART SM00926 58 118 2.4E-8 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 Pfam PF01568 Molydopterin dinucleotide binding domain 697 808 1.0E-27 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 Pfam PF00384 Molybdopterin oxidoreductase 121 576 2.0E-106 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 Gene3D G3DSA:3.40.50.740 419 627 4.1E-49 T 12-10-2018 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 SUPERFAMILY SSF53706 59 699 1.44E-174 T 12-10-2018 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 SUPERFAMILY SSF50692 643 816 4.75E-38 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 Gene3D G3DSA:2.40.40.20 672 816 4.5E-41 T 12-10-2018 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 14 816 0.0 T 12-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 63 81 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 519 536 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 YPK_3394 e8c85bd20ebab1aef6b563bda874c455 816 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 59 118 9.9E-17 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_0387 0c8564e0c1083e701cf3c77db7618e79 493 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 67 490 4.9E-175 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_0387 0c8564e0c1083e701cf3c77db7618e79 493 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 491 3.7E-210 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_3855 532e5889ccb135039c0e9b39b9d50501 451 SMART SM00382 203 409 3.2E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3855 532e5889ccb135039c0e9b39b9d50501 451 SUPERFAMILY SSF52540 184 435 5.03E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3855 532e5889ccb135039c0e9b39b9d50501 451 Pfam PF03796 DnaB-like helicase C terminal domain 186 442 2.0E-111 T 12-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 YPK_3855 532e5889ccb135039c0e9b39b9d50501 451 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 6 444 1.1E-174 T 12-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 YPK_3855 532e5889ccb135039c0e9b39b9d50501 451 Gene3D G3DSA:1.10.860.10 2 163 2.2E-54 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YPK_3855 532e5889ccb135039c0e9b39b9d50501 451 SUPERFAMILY SSF48024 5 116 3.27E-38 T 12-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 YPK_3855 532e5889ccb135039c0e9b39b9d50501 451 Gene3D G3DSA:3.40.50.300 164 443 8.6E-106 T 12-10-2018 YPK_3855 532e5889ccb135039c0e9b39b9d50501 451 Pfam PF00772 DnaB-like helicase N terminal domain 7 108 2.0E-36 T 12-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 YPK_1014 744583a3c841081b726afacf8c5d179f 280 Pfam PF01478 Type IV leader peptidase family 129 236 9.3E-24 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 YPK_1014 744583a3c841081b726afacf8c5d179f 280 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 206 217 1.5E-20 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPK_1014 744583a3c841081b726afacf8c5d179f 280 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 138 155 1.5E-20 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPK_1014 744583a3c841081b726afacf8c5d179f 280 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 195 205 1.5E-20 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPK_1014 744583a3c841081b726afacf8c5d179f 280 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 218 233 1.5E-20 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial YPK_1014 744583a3c841081b726afacf8c5d179f 280 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 13 118 1.2E-25 T 12-10-2018 IPR010627 Peptidase A24A, N-terminal YPK_3603 c10e95095483977bdff48fa3890365fe 309 Hamap MF_00384 Homoserine kinase [thrB]. 4 308 28.232 T 12-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 YPK_3603 c10e95095483977bdff48fa3890365fe 309 SUPERFAMILY SSF55060 173 289 5.4E-33 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YPK_3603 c10e95095483977bdff48fa3890365fe 309 PIRSF PIRSF000676 1 308 9.4E-83 T 12-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 YPK_3603 c10e95095483977bdff48fa3890365fe 309 TIGRFAM TIGR00191 thrB: homoserine kinase 2 307 6.1E-113 T 12-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 YPK_3603 c10e95095483977bdff48fa3890365fe 309 Pfam PF08544 GHMP kinases C terminal 215 280 2.8E-8 T 12-10-2018 IPR013750 GHMP kinase, C-terminal domain YPK_3603 c10e95095483977bdff48fa3890365fe 309 PRINTS PR00958 Homoserine kinase signature 254 269 1.7E-32 T 12-10-2018 YPK_3603 c10e95095483977bdff48fa3890365fe 309 PRINTS PR00958 Homoserine kinase signature 137 150 1.7E-32 T 12-10-2018 YPK_3603 c10e95095483977bdff48fa3890365fe 309 PRINTS PR00958 Homoserine kinase signature 175 192 1.7E-32 T 12-10-2018 YPK_3603 c10e95095483977bdff48fa3890365fe 309 PRINTS PR00958 Homoserine kinase signature 9 24 1.7E-32 T 12-10-2018 YPK_3603 c10e95095483977bdff48fa3890365fe 309 PRINTS PR00958 Homoserine kinase signature 97 112 1.7E-32 T 12-10-2018 YPK_3603 c10e95095483977bdff48fa3890365fe 309 Gene3D G3DSA:3.30.70.890 168 277 5.1E-102 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YPK_3603 c10e95095483977bdff48fa3890365fe 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 12-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 YPK_3603 c10e95095483977bdff48fa3890365fe 309 Gene3D G3DSA:3.30.230.10 4 167 5.1E-102 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3603 c10e95095483977bdff48fa3890365fe 309 Pfam PF00288 GHMP kinases N terminal domain 85 150 9.1E-14 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 YPK_3603 c10e95095483977bdff48fa3890365fe 309 SUPERFAMILY SSF54211 1 178 3.11E-31 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 Gene3D G3DSA:1.10.287.950 309 612 5.8E-93 T 12-10-2018 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 Pfam PF16591 Helical bimodular sensor domain 57 282 1.8E-13 T 12-10-2018 IPR032255 Helical bimodular sensor domain YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 422 577 9.2E-56 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 413 3.2E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 538 567 3.2E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 461 488 3.2E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 490 519 3.2E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 SMART SM00283 363 610 1.7E-87 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 SMART SM00304 310 362 1.4E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 Pfam PF00672 HAMP domain 310 358 1.8E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 SUPERFAMILY SSF58104 330 611 1.7E-74 T 12-10-2018 YPK_0034 a75b9c1e6f88c964f252a37f6709ded3 649 SMART SM01358 39 288 2.5E-45 T 12-10-2018 IPR032255 Helical bimodular sensor domain YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 TIGRFAM TIGR03951 Fe_III_red_FhuF: siderophore-iron reductase FhuF 77 251 9.0E-66 T 12-10-2018 IPR008090 Ferric iron reductase YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 Pfam PF06276 Ferric iron reductase FhuF-like transporter 83 226 1.0E-26 T 12-10-2018 IPR022770 Ferric iron reductase FhuF domain YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 230 250 1.1E-6 T 12-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 PRINTS PR01714 Ferric iron reductase signature 230 248 2.4E-45 T 12-10-2018 IPR008090 Ferric iron reductase YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 PRINTS PR01714 Ferric iron reductase signature 6 22 2.4E-45 T 12-10-2018 IPR008090 Ferric iron reductase YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 PRINTS PR01714 Ferric iron reductase signature 186 201 2.4E-45 T 12-10-2018 IPR008090 Ferric iron reductase YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 PRINTS PR01714 Ferric iron reductase signature 47 64 2.4E-45 T 12-10-2018 IPR008090 Ferric iron reductase YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 PRINTS PR01714 Ferric iron reductase signature 115 129 2.4E-45 T 12-10-2018 IPR008090 Ferric iron reductase YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 PRINTS PR01714 Ferric iron reductase signature 162 178 2.4E-45 T 12-10-2018 IPR008090 Ferric iron reductase YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 PRINTS PR01714 Ferric iron reductase signature 83 98 2.4E-45 T 12-10-2018 IPR008090 Ferric iron reductase YPK_2548 ea6c1a1cfbc9dae823ee451d622b99c3 259 PRINTS PR01714 Ferric iron reductase signature 204 220 2.4E-45 T 12-10-2018 IPR008090 Ferric iron reductase YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 Gene3D G3DSA:3.40.190.10 6 216 2.4E-84 T 12-10-2018 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 2.3E-113 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 Gene3D G3DSA:3.30.160.40 221 306 8.0E-31 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 212 7.4E-78 T 12-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 1.7E-22 T 12-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 PIRSF PIRSF001438 1 311 1.3E-121 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 Gene3D G3DSA:3.40.190.10 100 199 2.4E-84 T 12-10-2018 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 12-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.442 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 SUPERFAMILY SSF53850 5 219 2.02E-85 T 12-10-2018 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 SUPERFAMILY SSF54782 220 309 7.85E-29 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 3.0E-49 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 3.0E-49 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 3.0E-49 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 3.0E-49 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4016 06724bb06587197cb690ecfbb5a2c979 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 3.0E-49 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_3899 d9552224ce0a30c9846302c579c87b55 355 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 202 220 9.7E-39 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_3899 d9552224ce0a30c9846302c579c87b55 355 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 222 239 9.7E-39 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_3899 d9552224ce0a30c9846302c579c87b55 355 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 296 317 9.7E-39 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_3899 d9552224ce0a30c9846302c579c87b55 355 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 266 281 9.7E-39 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_3899 d9552224ce0a30c9846302c579c87b55 355 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 9.7E-39 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_3899 d9552224ce0a30c9846302c579c87b55 355 Gene3D G3DSA:3.40.1690.10 211 351 6.4E-50 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_3899 d9552224ce0a30c9846302c579c87b55 355 SUPERFAMILY SSF160544 238 344 1.06E-31 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_3899 d9552224ce0a30c9846302c579c87b55 355 Pfam PF01312 FlhB HrpN YscU SpaS Family 4 340 8.5E-104 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_3899 d9552224ce0a30c9846302c579c87b55 355 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 4 342 1.7E-117 T 12-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 YPK_2575 be95fa44db2f5329b75bc6985480ad30 420 Gene3D G3DSA:2.40.30.170 68 342 2.8E-29 T 12-10-2018 YPK_2575 be95fa44db2f5329b75bc6985480ad30 420 Gene3D G3DSA:2.40.420.20 343 404 2.8E-29 T 12-10-2018 YPK_2575 be95fa44db2f5329b75bc6985480ad30 420 Pfam PF13437 HlyD family secretion protein 235 320 1.8E-6 T 12-10-2018 YPK_2575 be95fa44db2f5329b75bc6985480ad30 420 Gene3D G3DSA:2.40.50.100 74 269 2.8E-29 T 12-10-2018 YPK_2575 be95fa44db2f5329b75bc6985480ad30 420 Gene3D G3DSA:1.10.287.470 108 235 2.8E-29 T 12-10-2018 YPK_0498 397e9cde53988775b301a8dfac884521 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 12-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 YPK_0498 397e9cde53988775b301a8dfac884521 128 Gene3D G3DSA:3.30.1330.40 1 128 3.6E-48 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YPK_0498 397e9cde53988775b301a8dfac884521 128 Pfam PF01042 Endoribonuclease L-PSP 8 126 2.5E-43 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YPK_0498 397e9cde53988775b301a8dfac884521 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 1.3E-52 T 12-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 YPK_0498 397e9cde53988775b301a8dfac884521 128 SUPERFAMILY SSF55298 4 127 2.2E-43 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YPK_2469 a70bb35a9e0dc0ae45f5e444a6a8970b 768 Pfam PF07715 TonB-dependent Receptor Plug Domain 108 201 5.2E-9 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_2469 a70bb35a9e0dc0ae45f5e444a6a8970b 768 Pfam PF00593 TonB dependent receptor 284 766 3.0E-27 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_2469 a70bb35a9e0dc0ae45f5e444a6a8970b 768 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 110 768 2.2E-153 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 YPK_2469 a70bb35a9e0dc0ae45f5e444a6a8970b 768 SUPERFAMILY SSF56935 60 768 6.11E-88 T 12-10-2018 YPK_2469 a70bb35a9e0dc0ae45f5e444a6a8970b 768 Gene3D G3DSA:2.170.130.10 104 220 3.7E-16 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_2469 a70bb35a9e0dc0ae45f5e444a6a8970b 768 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 751 768 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site YPK_2469 a70bb35a9e0dc0ae45f5e444a6a8970b 768 Gene3D G3DSA:2.40.170.20 221 768 2.2E-68 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_1545 853e1cd9f40aebd9e51bd8d559d4de1f 182 PIRSF PIRSF017340 2 171 6.6E-69 T 12-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 YPK_1545 853e1cd9f40aebd9e51bd8d559d4de1f 182 Pfam PF00293 NUDIX domain 37 150 6.8E-18 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_1545 853e1cd9f40aebd9e51bd8d559d4de1f 182 SUPERFAMILY SSF55811 11 167 7.45E-34 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_1545 853e1cd9f40aebd9e51bd8d559d4de1f 182 Gene3D G3DSA:3.90.79.10 2 178 9.5E-56 T 12-10-2018 YPK_3184 35c01646360456061f0ffccfa362300c 337 Gene3D G3DSA:3.40.50.2000 165 335 5.3E-33 T 12-10-2018 YPK_3184 35c01646360456061f0ffccfa362300c 337 Gene3D G3DSA:3.40.50.2000 1 164 2.5E-16 T 12-10-2018 YPK_3184 35c01646360456061f0ffccfa362300c 337 Pfam PF13439 Glycosyltransferase Family 4 70 156 7.1E-16 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 YPK_3184 35c01646360456061f0ffccfa362300c 337 SUPERFAMILY SSF53756 1 335 7.63E-64 T 12-10-2018 YPK_3184 35c01646360456061f0ffccfa362300c 337 Pfam PF00534 Glycosyl transferases group 1 158 305 6.0E-23 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 YPK_2203 5c3129ab4a7b53acb03a6fb170124833 219 Pfam PF08242 Methyltransferase domain 54 151 4.7E-9 T 12-10-2018 IPR013217 Methyltransferase type 12 YPK_2203 5c3129ab4a7b53acb03a6fb170124833 219 SUPERFAMILY SSF53335 36 207 6.52E-16 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2203 5c3129ab4a7b53acb03a6fb170124833 219 Gene3D G3DSA:3.40.50.150 22 207 4.3E-13 T 12-10-2018 YPK_2203 5c3129ab4a7b53acb03a6fb170124833 219 PIRSF PIRSF011491 1 219 3.8E-96 T 12-10-2018 IPR016584 Methyltransferase VrtF-like YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 207 670 1.2E-237 T 12-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 Gene3D G3DSA:3.30.70.20 5 161 1.3E-25 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 Gene3D G3DSA:1.10.1060.10 208 342 4.7E-32 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 SUPERFAMILY SSF51971 344 599 1.29E-65 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 PRINTS PR00419 Adrenodoxin reductase family signature 522 535 2.3E-35 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 PRINTS PR00419 Adrenodoxin reductase family signature 488 502 2.3E-35 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 PRINTS PR00419 Adrenodoxin reductase family signature 369 382 2.3E-35 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 PRINTS PR00419 Adrenodoxin reductase family signature 411 421 2.3E-35 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 PRINTS PR00419 Adrenodoxin reductase family signature 346 368 2.3E-35 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 Pfam PF13247 4Fe-4S dicluster domain 55 153 4.8E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 345 657 1.6E-17 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 SUPERFAMILY SSF54862 2 307 2.34E-44 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 Gene3D G3DSA:3.50.50.60 343 409 1.5E-8 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 Gene3D G3DSA:3.30.70.20 62 127 1.3E-25 T 12-10-2018 YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 Gene3D G3DSA:3.50.50.60 444 598 2.2E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3831 d512db2b856d8edc321ff023f1f5aa0e 671 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 222 331 2.8E-35 T 12-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 YPK_2248 bd56aee6fb75eaeee8c5b33f3850279a 430 Pfam PF02687 FtsX-like permease family 335 422 4.7E-14 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YPK_4132 0fc2f049b776239777b1db8eeb885724 232 SMART SM00448 2 111 7.7E-47 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_4132 0fc2f049b776239777b1db8eeb885724 232 SUPERFAMILY SSF52172 1 188 6.55E-42 T 12-10-2018 IPR011006 CheY-like superfamily YPK_4132 0fc2f049b776239777b1db8eeb885724 232 Gene3D G3DSA:3.40.50.2300 1 129 3.6E-42 T 12-10-2018 YPK_4132 0fc2f049b776239777b1db8eeb885724 232 SMART SM00862 152 228 2.6E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_4132 0fc2f049b776239777b1db8eeb885724 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 2.1E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_4132 0fc2f049b776239777b1db8eeb885724 232 Gene3D G3DSA:1.10.10.10 130 232 9.7E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_4132 0fc2f049b776239777b1db8eeb885724 232 Pfam PF00072 Response regulator receiver domain 4 112 1.0E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0175 90954afcb1b8a2df917d44cc0723ee03 293 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 285 32.017 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 YPK_0175 90954afcb1b8a2df917d44cc0723ee03 293 SUPERFAMILY SSF64397 4 233 3.27E-76 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 YPK_0175 90954afcb1b8a2df917d44cc0723ee03 293 SUPERFAMILY SSF118352 226 283 1.7E-19 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 YPK_0175 90954afcb1b8a2df917d44cc0723ee03 293 Pfam PF01430 Hsp33 protein 5 274 4.5E-86 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 YPK_0175 90954afcb1b8a2df917d44cc0723ee03 293 PIRSF PIRSF005261 1 285 8.1E-74 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 YPK_0175 90954afcb1b8a2df917d44cc0723ee03 293 Gene3D G3DSA:1.10.287.480 178 226 1.2E-23 T 12-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily YPK_0175 90954afcb1b8a2df917d44cc0723ee03 293 Gene3D G3DSA:3.55.30.10 1 177 1.0E-64 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 YPK_0175 90954afcb1b8a2df917d44cc0723ee03 293 Gene3D G3DSA:3.90.1280.10 227 286 4.4E-23 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 YPK_3393 fe7632104c811f9eaf7fb256c1150e3d 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 4 163 5.9E-78 T 12-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B YPK_3393 fe7632104c811f9eaf7fb256c1150e3d 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3393 fe7632104c811f9eaf7fb256c1150e3d 205 Gene3D G3DSA:3.30.70.20 1 204 1.6E-53 T 12-10-2018 YPK_3393 fe7632104c811f9eaf7fb256c1150e3d 205 Pfam PF13247 4Fe-4S dicluster domain 59 152 8.1E-27 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_3393 fe7632104c811f9eaf7fb256c1150e3d 205 SUPERFAMILY SSF54862 3 200 2.3E-68 T 12-10-2018 YPK_3393 fe7632104c811f9eaf7fb256c1150e3d 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.0023 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_2477 b0a5d474077e23f905507b5ccf2b4c67 457 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YPK_2477 b0a5d474077e23f905507b5ccf2b4c67 457 PIRSF PIRSF006060 1 449 2.4E-77 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2477 b0a5d474077e23f905507b5ccf2b4c67 457 Pfam PF00324 Amino acid permease 18 445 4.2E-118 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YPK_2477 b0a5d474077e23f905507b5ccf2b4c67 457 Gene3D G3DSA:1.20.1740.10 10 456 9.2E-59 T 12-10-2018 YPK_1665 050464ba680e1101c06d7f8974c80cf9 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 296 8.0E-102 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YPK_1665 050464ba680e1101c06d7f8974c80cf9 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 3 305 52.684 T 12-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 YPK_1665 050464ba680e1101c06d7f8974c80cf9 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 5 305 3.4E-144 T 12-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 YPK_1665 050464ba680e1101c06d7f8974c80cf9 306 PIRSF PIRSF026649 1 305 1.4E-99 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YPK_1008 73fb48d2caff48508292b64b710240db 180 PRINTS PR00885 Bacterial general secretion pathway protein H signature 3 17 7.3E-7 T 12-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 YPK_1008 73fb48d2caff48508292b64b710240db 180 PRINTS PR00885 Bacterial general secretion pathway protein H signature 139 154 7.3E-7 T 12-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 YPK_1008 73fb48d2caff48508292b64b710240db 180 PRINTS PR00885 Bacterial general secretion pathway protein H signature 18 32 7.3E-7 T 12-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 YPK_1008 73fb48d2caff48508292b64b710240db 180 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 21 6.7E-5 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1008 73fb48d2caff48508292b64b710240db 180 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 21 4.6E-5 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1008 73fb48d2caff48508292b64b710240db 180 Gene3D G3DSA:3.55.40.10 37 177 4.8E-6 T 12-10-2018 YPK_3400 a9281168d9362c99f13491e8dd5841de 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 312 6.0E-38 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1116 17038ad43c354860b37f4bcce50f78f0 323 Pfam PF00268 Ribonucleotide reductase, small chain 13 278 4.7E-85 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1116 17038ad43c354860b37f4bcce50f78f0 323 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 11 323 2.4E-144 T 12-10-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 YPK_1116 17038ad43c354860b37f4bcce50f78f0 323 PIRSF PIRSF000355 5 320 5.5E-81 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1116 17038ad43c354860b37f4bcce50f78f0 323 SUPERFAMILY SSF47240 10 323 4.71E-105 T 12-10-2018 IPR009078 Ferritin-like superfamily YPK_1116 17038ad43c354860b37f4bcce50f78f0 323 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 101 117 - T 12-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 YPK_1116 17038ad43c354860b37f4bcce50f78f0 323 Gene3D G3DSA:1.10.620.20 6 292 2.9E-114 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 YPK_1805 c3a95a4e625b553241366d2835450f61 110 PIRSF PIRSF029883 3 110 1.7E-29 T 12-10-2018 IPR025499 Pectin degradation protein KdgF YPK_1805 c3a95a4e625b553241366d2835450f61 110 Gene3D G3DSA:2.60.120.10 1 110 1.4E-33 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1805 c3a95a4e625b553241366d2835450f61 110 SUPERFAMILY SSF51182 8 109 2.97E-18 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_1805 c3a95a4e625b553241366d2835450f61 110 Pfam PF07883 Cupin domain 35 92 1.5E-9 T 12-10-2018 IPR013096 Cupin 2, conserved barrel YPK_3710 c847e27df3771773134a0e0f1923fa88 407 Pfam PF05426 Alginate lyase 72 351 2.0E-71 T 12-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 YPK_3710 c847e27df3771773134a0e0f1923fa88 407 SUPERFAMILY SSF48230 79 358 5.31E-47 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YPK_3710 c847e27df3771773134a0e0f1923fa88 407 Gene3D G3DSA:1.50.10.100 32 403 7.8E-117 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 YPK_1882 1207c12479ce718b8dcb1f1bc1e3a92c 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 284 2.6E-128 T 12-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 YPK_1882 1207c12479ce718b8dcb1f1bc1e3a92c 286 SUPERFAMILY SSF53613 1 279 1.2E-76 T 12-10-2018 IPR029056 Ribokinase-like YPK_1882 1207c12479ce718b8dcb1f1bc1e3a92c 286 Gene3D G3DSA:3.40.1190.20 1 286 1.6E-91 T 12-10-2018 IPR029056 Ribokinase-like YPK_1882 1207c12479ce718b8dcb1f1bc1e3a92c 286 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 53.83 T 12-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 YPK_1882 1207c12479ce718b8dcb1f1bc1e3a92c 286 Pfam PF08543 Phosphomethylpyrimidine kinase 90 263 1.0E-16 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 SUPERFAMILY SSF52540 196 531 4.1E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 Pfam PF07724 AAA domain (Cdc48 subfamily) 611 775 3.5E-38 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 Gene3D G3DSA:1.10.1780.10 2 161 5.7E-44 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 330 342 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 Gene3D G3DSA:3.40.50.300 564 780 3.7E-66 T 12-10-2018 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 239 351 1.2E-9 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 SMART SM01086 782 875 1.9E-12 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 Gene3D G3DSA:3.40.50.300 186 378 1.0E-62 T 12-10-2018 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 Gene3D G3DSA:3.40.50.300 380 558 5.2E-41 T 12-10-2018 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 722 736 2.0E-32 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 660 678 2.0E-32 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 689 707 2.0E-32 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 615 633 2.0E-32 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 Gene3D G3DSA:1.10.8.60 782 877 5.9E-12 T 12-10-2018 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 864 0.0 T 12-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 SUPERFAMILY SSF52540 560 852 2.67E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 SMART SM00382 234 379 8.0E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 SMART SM00382 611 772 3.9E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 782 860 9.0E-14 T 12-10-2018 IPR019489 Clp ATPase, C-terminal YPK_0804 ab314dde5ff313331c1892cf810d1c58 880 SUPERFAMILY SSF81923 12 127 1.23E-16 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 YPK_4054 de229ffa7cb3f3d2063c57ac136fd858 292 TIGRFAM TIGR03034 TIGR03034: conserved hypothetical protein 11 285 1.0E-147 T 12-10-2018 IPR017483 Conserved hypothetical protein CHP03034 YPK_4054 de229ffa7cb3f3d2063c57ac136fd858 292 Pfam PF11692 Protein of unknown function (DUF3289) 13 285 1.7E-116 T 12-10-2018 IPR017483 Conserved hypothetical protein CHP03034 YPK_2237 cbf1145e12961740722eb0aafdd18065 299 SUPERFAMILY SSF55729 89 261 5.09E-34 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_2237 cbf1145e12961740722eb0aafdd18065 299 Gene3D G3DSA:3.40.630.30 78 297 8.1E-56 T 12-10-2018 YPK_2237 cbf1145e12961740722eb0aafdd18065 299 Pfam PF13302 Acetyltransferase (GNAT) domain 112 237 4.9E-13 T 12-10-2018 IPR000182 GNAT domain YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 PIRSF PIRSF006205 1 398 1.4E-154 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 3.9E-37 T 12-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 3.1E-39 T 12-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 395 9.6E-178 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 2.9E-47 T 12-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 SUPERFAMILY SSF51735 2 150 2.9E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 46.305 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 SUPERFAMILY SSF55347 126 274 6.54E-64 T 12-10-2018 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 Gene3D G3DSA:1.10.1740.10 312 398 1.4E-31 T 12-10-2018 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 Gene3D G3DSA:3.40.50.720 1 150 5.8E-58 T 12-10-2018 YPK_1070 69e0a2bb7ad0204e8234b04c1d814739 398 SUPERFAMILY SSF69055 301 395 7.19E-29 T 12-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 YPK_2643 2bf07ce8cbf51a41d56f63a7f8af67ca 183 Pfam PF07126 Cell-division protein ZapC 3 169 1.3E-68 T 12-10-2018 IPR009809 Cell division protein ZapC YPK_2643 2bf07ce8cbf51a41d56f63a7f8af67ca 183 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 178 42.111 T 12-10-2018 IPR009809 Cell division protein ZapC YPK_2643 2bf07ce8cbf51a41d56f63a7f8af67ca 183 PIRSF PIRSF010252 1 179 1.5E-60 T 12-10-2018 IPR009809 Cell division protein ZapC YPK_3792 d4450db8e997d228750bf973b4ec00e5 154 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 14 154 47.127 T 12-10-2018 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 YPK_3792 d4450db8e997d228750bf973b4ec00e5 154 Pfam PF02082 Transcriptional regulator 15 95 2.1E-23 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type YPK_3792 d4450db8e997d228750bf973b4ec00e5 154 Gene3D G3DSA:1.10.10.10 11 149 1.1E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3792 d4450db8e997d228750bf973b4ec00e5 154 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 62 80 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site YPK_3792 d4450db8e997d228750bf973b4ec00e5 154 SUPERFAMILY SSF46785 15 144 3.8E-34 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3792 d4450db8e997d228750bf973b4ec00e5 154 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 15 142 1.4E-36 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 SUPERFAMILY SSF56672 1 234 5.96E-92 T 12-10-2018 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 Hamap MF_01113 DNA polymerase IV [dinB]. 1 349 37.322 T 12-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 Pfam PF11799 impB/mucB/samB family C-terminal domain 235 341 3.7E-9 T 12-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 Gene3D G3DSA:2.30.40.20 21 73 1.1E-64 T 12-10-2018 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 Pfam PF11798 IMS family HHH motif 169 197 5.7E-8 T 12-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 Gene3D G3DSA:1.10.150.20 166 228 8.4E-19 T 12-10-2018 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 Pfam PF00817 impB/mucB/samB family 7 154 2.5E-48 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 Gene3D G3DSA:3.30.70.270 4 164 1.1E-64 T 12-10-2018 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 Gene3D G3DSA:3.30.1490.100 237 351 5.4E-30 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 YPK_3296 21a2ba3044456609e622ca05e3b555cf 352 SUPERFAMILY SSF100879 241 350 8.79E-28 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 YPK_3481 d78ad99971c4ede6f7eea960215e33e4 115 Gene3D G3DSA:1.20.58.1630 23 114 3.6E-10 T 12-10-2018 IPR038432 PulS/OutS-like superfamily YPK_3481 d78ad99971c4ede6f7eea960215e33e4 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 35 113 2.0E-42 T 12-10-2018 YPK_3481 d78ad99971c4ede6f7eea960215e33e4 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 24 106 3.2E-9 T 12-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPK_4199 2fc1b1804099385c7ce748c640d9a6d3 195 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 3 188 29.853 T 12-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 YPK_4199 2fc1b1804099385c7ce748c640d9a6d3 195 Gene3D G3DSA:3.90.550.10 2 194 4.7E-57 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4199 2fc1b1804099385c7ce748c640d9a6d3 195 Pfam PF12804 MobA-like NTP transferase domain 7 156 1.2E-34 T 12-10-2018 IPR025877 MobA-like NTP transferase YPK_4199 2fc1b1804099385c7ce748c640d9a6d3 195 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 5 185 6.9E-69 T 12-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 YPK_4199 2fc1b1804099385c7ce748c640d9a6d3 195 SUPERFAMILY SSF53448 3 184 1.03E-34 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 PIRSF PIRSF005246 1 1483 0.0 T 12-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Gene3D G3DSA:1.20.1060.30 667 778 2.0E-137 T 12-10-2018 YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Gene3D G3DSA:3.40.1140.10 1383 1468 2.8E-38 T 12-10-2018 YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Gene3D G3DSA:1.20.58.850 620 830 2.0E-137 T 12-10-2018 YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Pfam PF16330 MukB hinge domain 645 810 1.8E-73 T 12-10-2018 IPR032520 MukB, hinge domain YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Gene3D G3DSA:3.40.1140.10 1 227 5.1E-101 T 12-10-2018 YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.059 T 12-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 SUPERFAMILY SSF52540 21 1433 3.55E-6 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 SUPERFAMILY SSF52540 22 224 3.36E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 1.1E-14 T 12-10-2018 YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Pfam PF04310 MukB N-terminal 2 227 1.8E-123 T 12-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 YPK_2655 523c6a563b7b8ce937848ec52e2dbca1 1485 Gene3D G3DSA:1.20.58.850 581 852 2.0E-137 T 12-10-2018 YPK_2719 33af0c04979956c52e5db22c2f166c81 352 SUPERFAMILY SSF81345 14 347 8.76E-79 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2719 33af0c04979956c52e5db22c2f166c81 352 Gene3D G3DSA:1.10.3470.10 23 352 5.0E-91 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2719 33af0c04979956c52e5db22c2f166c81 352 Pfam PF01032 FecCD transport family 33 346 1.9E-85 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_2647 c0e4f11bdf23973141821f0bb9b5766a 406 Gene3D G3DSA:3.20.140.10 6 406 2.2E-174 T 12-10-2018 YPK_2647 c0e4f11bdf23973141821f0bb9b5766a 406 PIRSF PIRSF000484 4 387 1.0E-57 T 12-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 YPK_2647 c0e4f11bdf23973141821f0bb9b5766a 406 SUPERFAMILY SSF51690 125 397 1.22E-85 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 YPK_2647 c0e4f11bdf23973141821f0bb9b5766a 406 SUPERFAMILY SSF54675 7 143 8.01E-42 T 12-10-2018 YPK_2647 c0e4f11bdf23973141821f0bb9b5766a 406 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 13 400 1.0E-163 T 12-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 YPK_2647 c0e4f11bdf23973141821f0bb9b5766a 406 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 10 401 48.606 T 12-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 YPK_2647 c0e4f11bdf23973141821f0bb9b5766a 406 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 174 399 1.0E-80 T 12-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 YPK_1258 64d3ecc9e1336390b39bdd2ef90eb514 355 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 25 243 1.0E-119 T 12-10-2018 YPK_1258 64d3ecc9e1336390b39bdd2ef90eb514 355 Pfam PF13942 YfhG lipoprotein 68 241 1.9E-78 T 12-10-2018 IPR025262 Quorum-sensing regulator protein G YPK_1747 6c5cbd043400e9ed37296899af286812 295 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site YPK_1747 6c5cbd043400e9ed37296899af286812 295 Pfam PF01618 MotA/TolQ/ExbB proton channel family 139 239 2.9E-11 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel YPK_1747 6c5cbd043400e9ed37296899af286812 295 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 281 2.8E-119 T 12-10-2018 IPR022522 Flagellar motor stator, MotA YPK_2439 602f1f560b63794d563a2da21eb67472 76 SUPERFAMILY SSF46575 1 76 9.94E-36 T 12-10-2018 YPK_2439 602f1f560b63794d563a2da21eb67472 76 Gene3D G3DSA:1.20.58.250 1 76 8.1E-36 T 12-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_2439 602f1f560b63794d563a2da21eb67472 76 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 4 76 6.0E-36 T 12-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_2439 602f1f560b63794d563a2da21eb67472 76 Pfam PF06440 DNA polymerase III, theta subunit 3 71 6.2E-38 T 12-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 YPK_0447 a04eeb54b7b72c2d2466691bae4829a5 296 SUPERFAMILY SSF48179 170 291 4.76E-29 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_0447 a04eeb54b7b72c2d2466691bae4829a5 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 9 22 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 YPK_0447 a04eeb54b7b72c2d2466691bae4829a5 296 PIRSF PIRSF000103 1 296 6.6E-62 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 YPK_0447 a04eeb54b7b72c2d2466691bae4829a5 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 167 5.2E-37 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 YPK_0447 a04eeb54b7b72c2d2466691bae4829a5 296 SUPERFAMILY SSF51735 5 168 5.47E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0447 a04eeb54b7b72c2d2466691bae4829a5 296 Gene3D G3DSA:1.10.1040.10 174 294 7.9E-32 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_0447 a04eeb54b7b72c2d2466691bae4829a5 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 291 6.2E-38 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 YPK_0447 a04eeb54b7b72c2d2466691bae4829a5 296 Gene3D G3DSA:3.40.50.720 5 173 9.8E-43 T 12-10-2018 YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 SUPERFAMILY SSF50129 321 372 3.72E-12 T 12-10-2018 IPR011032 GroES-like superfamily YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 SUPERFAMILY SSF51735 163 337 2.56E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 SMART SM00829 13 370 5.0E-4 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 5 372 6.3E-224 T 12-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 Gene3D G3DSA:3.40.50.720 177 315 4.7E-156 T 12-10-2018 YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 Pfam PF00107 Zinc-binding dehydrogenase 200 327 5.0E-24 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 129 4.8E-25 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 Gene3D G3DSA:3.90.180.10 9 367 4.7E-156 T 12-10-2018 YPK_2571 fc2f023f78d8685a7af4915e97165ac0 379 SUPERFAMILY SSF50129 2 190 7.0E-74 T 12-10-2018 IPR011032 GroES-like superfamily YPK_3131 4394986407e29ce06cbe3a8db18b0c15 127 Pfam PF06755 CbtA_toxin of type IV toxin-antitoxin system 1 112 5.4E-54 T 12-10-2018 IPR009610 CbtA toxin of type IV toxin-antitoxin system YPK_3251 60b113eab31b89cd21d30fe27c18f455 84 SUPERFAMILY SSF116842 9 75 4.32E-21 T 12-10-2018 YPK_3251 60b113eab31b89cd21d30fe27c18f455 84 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 14 69 5.1E-23 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YPK_3251 60b113eab31b89cd21d30fe27c18f455 84 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 14 74 16.11 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YPK_3251 60b113eab31b89cd21d30fe27c18f455 84 Pfam PF02609 Exonuclease VII small subunit 15 66 2.5E-20 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YPK_3251 60b113eab31b89cd21d30fe27c18f455 84 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 14 56 1.0E-16 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YPK_3251 60b113eab31b89cd21d30fe27c18f455 84 PIRSF PIRSF006488 2 84 8.8E-24 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 YPK_3251 60b113eab31b89cd21d30fe27c18f455 84 Gene3D G3DSA:1.10.287.1040 9 84 2.9E-25 T 12-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 YPK_3773 6f93087d885c75848feda0e9636a1f3f 70 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 65 6.0E-32 T 12-10-2018 IPR009491 Protein of unknown function DUF1107 YPK_3773 6f93087d885c75848feda0e9636a1f3f 70 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 2.8E-29 T 12-10-2018 IPR009491 Protein of unknown function DUF1107 YPK_3773 6f93087d885c75848feda0e9636a1f3f 70 Gene3D G3DSA:3.30.1910.10 1 64 1.2E-26 T 12-10-2018 YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 Gene3D G3DSA:2.60.40.2070 714 784 6.4E-6 T 12-10-2018 YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 Pfam PF13954 PapC N-terminal domain 33 159 9.5E-14 T 12-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 Gene3D G3DSA:2.60.40.3110 257 319 1.1E-20 T 12-10-2018 YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 Pfam PF00577 Outer membrane usher protein 177 704 8.2E-68 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 Gene3D G3DSA:2.60.40.2610 620 708 1.4E-14 T 12-10-2018 YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 284 294 - T 12-10-2018 IPR018030 Fimbrial membrane usher, conserved site YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 SUPERFAMILY SSF141729 30 139 2.09E-15 T 12-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 Pfam PF13953 PapC C-terminal domain 713 776 5.2E-12 T 12-10-2018 IPR025949 PapC-like, C-terminal domain YPK_3870 02d1e0b9823b8bbaa19f2fa5f9d4f2de 792 Gene3D G3DSA:3.10.20.410 30 140 5.2E-5 T 12-10-2018 YPK_3421 c1eff63ed71c29b33b78eb59d217df35 371 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 85 99 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 YPK_3421 c1eff63ed71c29b33b78eb59d217df35 371 Pfam PF00107 Zinc-binding dehydrogenase 202 318 1.2E-22 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 YPK_3421 c1eff63ed71c29b33b78eb59d217df35 371 Gene3D G3DSA:3.40.50.720 178 315 2.5E-94 T 12-10-2018 YPK_3421 c1eff63ed71c29b33b78eb59d217df35 371 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 43 154 8.3E-26 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 YPK_3421 c1eff63ed71c29b33b78eb59d217df35 371 Gene3D G3DSA:3.90.180.10 26 355 2.5E-94 T 12-10-2018 YPK_3421 c1eff63ed71c29b33b78eb59d217df35 371 SMART SM00829 26 366 0.0013 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 YPK_3421 c1eff63ed71c29b33b78eb59d217df35 371 SUPERFAMILY SSF51735 168 321 2.14E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3421 c1eff63ed71c29b33b78eb59d217df35 371 SUPERFAMILY SSF50129 18 197 6.45E-47 T 12-10-2018 IPR011032 GroES-like superfamily YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 Gene3D G3DSA:1.10.10.10 1 75 5.4E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 SMART SM00895 99 227 3.3E-19 T 12-10-2018 IPR011711 GntR, C-terminal YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 SUPERFAMILY SSF46785 5 76 2.45E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 SUPERFAMILY SSF48008 95 235 1.12E-21 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 Gene3D G3DSA:1.20.120.530 97 236 2.3E-29 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 2.7E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 SMART SM00345 15 74 1.6E-26 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 Pfam PF07729 FCD domain 99 226 8.6E-19 T 12-10-2018 IPR011711 GntR, C-terminal YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 3.0E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_3492 a378cd4fd4c31ae6aa42a767bb20f654 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 3.0E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2243 15966b8b8bc4e3e67cb30a2e5674cee7 295 SUPERFAMILY SSF51197 10 109 3.43E-37 T 12-10-2018 YPK_2243 15966b8b8bc4e3e67cb30a2e5674cee7 295 SUPERFAMILY SSF53335 75 282 6.39E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2243 15966b8b8bc4e3e67cb30a2e5674cee7 295 Pfam PF09313 Domain of unknown function (DUF1971) 16 96 3.4E-30 T 12-10-2018 IPR015392 Domain of unknown function DUF1971 YPK_2243 15966b8b8bc4e3e67cb30a2e5674cee7 295 Pfam PF03848 Tellurite resistance protein TehB 98 290 2.8E-112 T 12-10-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain YPK_2243 15966b8b8bc4e3e67cb30a2e5674cee7 295 PIRSF PIRSF005215 1 295 5.2E-150 T 12-10-2018 IPR014431 Tellurite resistance methyltransferase, TehB type-2 YPK_2243 15966b8b8bc4e3e67cb30a2e5674cee7 295 Gene3D G3DSA:3.40.50.150 115 294 7.1E-42 T 12-10-2018 YPK_2243 15966b8b8bc4e3e67cb30a2e5674cee7 295 Gene3D G3DSA:2.60.120.10 9 114 4.8E-41 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_2243 15966b8b8bc4e3e67cb30a2e5674cee7 295 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 56 293 4.0E-110 T 12-10-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 YPK_4075 01af90948fa499a2c8fcf342512c2767 135 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 3 115 4.0E-50 T 12-10-2018 IPR009867 Protein of unknown function DUF1422 YPK_4075 01af90948fa499a2c8fcf342512c2767 135 Pfam PF07226 Protein of unknown function (DUF1422) 4 115 3.7E-51 T 12-10-2018 IPR009867 Protein of unknown function DUF1422 YPK_0725 0ebeddb40cec29d743d280f138922161 305 Gene3D G3DSA:1.10.10.10 1 71 2.3E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0725 0ebeddb40cec29d743d280f138922161 305 SUPERFAMILY SSF46894 2 66 7.09E-13 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_0725 0ebeddb40cec29d743d280f138922161 305 SMART SM00862 1 66 3.8E-5 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_0725 0ebeddb40cec29d743d280f138922161 305 Pfam PF00486 Transcriptional regulatory protein, C terminal 2 66 3.1E-13 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 248 267 2.4E-39 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 335 354 2.4E-39 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 295 311 2.4E-39 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 405 426 2.4E-39 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 268 287 2.4E-39 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 151 171 2.4E-39 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 450 468 2.4E-39 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 SUPERFAMILY SSF55486 3 499 1.34E-123 T 12-10-2018 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 12 498 1.1E-94 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 Gene3D G3DSA:1.10.1370.30 1 499 3.0E-201 T 12-10-2018 YPK_1935 1cd961fde1451d04a5f6ef95a6bb7607 499 PIRSF PIRSF006615 1 499 7.6E-203 T 12-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 YPK_1037 4ebb10d7718c05d751cb0cce9ab05faf 189 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 33 54 1.1E-4 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1037 4ebb10d7718c05d751cb0cce9ab05faf 189 SUPERFAMILY SSF54523 37 178 1.26E-12 T 12-10-2018 YPK_1037 4ebb10d7718c05d751cb0cce9ab05faf 189 Pfam PF07963 Prokaryotic N-terminal methylation motif 32 53 9.0E-6 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1691 5d0636db66d4e56d75891247fcf7a6b9 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 198 1.6E-63 T 12-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 YPK_1691 5d0636db66d4e56d75891247fcf7a6b9 212 SUPERFAMILY SSF52540 1 208 3.27E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1691 5d0636db66d4e56d75891247fcf7a6b9 212 Hamap MF_00165 Thymidylate kinase [tmk]. 4 206 28.253 T 12-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 YPK_1691 5d0636db66d4e56d75891247fcf7a6b9 212 Gene3D G3DSA:3.40.50.300 1 210 1.7E-63 T 12-10-2018 YPK_1691 5d0636db66d4e56d75891247fcf7a6b9 212 Pfam PF02223 Thymidylate kinase 8 198 3.2E-61 T 12-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 YPK_1691 5d0636db66d4e56d75891247fcf7a6b9 212 ProSitePatterns PS01331 Thymidylate kinase signature. 95 107 - T 12-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 YPK_1338 e25bdb0e7db45c63d9b3de13eb97e02d 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 271 9.6E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1338 e25bdb0e7db45c63d9b3de13eb97e02d 282 Gene3D G3DSA:1.10.3720.10 19 276 6.1E-58 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1338 e25bdb0e7db45c63d9b3de13eb97e02d 282 SUPERFAMILY SSF161098 19 273 1.21E-58 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 Gene3D G3DSA:3.20.20.210 392 759 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 10 318 5.7E-127 T 12-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 PIRSF PIRSF000382 7 763 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 Gene3D G3DSA:3.20.20.210 12 527 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 SUPERFAMILY SSF51726 399 761 8.89E-119 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 434 756 9.1E-160 T 12-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 8 761 37.592 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 13 761 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 YPK_3952 3df7b2f2cde0f5d2e445b072887b2208 763 SUPERFAMILY SSF51726 10 397 1.96E-113 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YPK_3864 ce7b8124ce755d69693635c9268585a0 174 Pfam PF04345 Chorismate lyase 12 168 8.7E-34 T 12-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 YPK_3864 ce7b8124ce755d69693635c9268585a0 174 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 12 166 26.273 T 12-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 YPK_3864 ce7b8124ce755d69693635c9268585a0 174 Gene3D G3DSA:3.40.1410.10 5 166 2.4E-51 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_3864 ce7b8124ce755d69693635c9268585a0 174 SUPERFAMILY SSF64288 8 166 4.37E-52 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_3327 04fc955117c7728dd5d880804a6fe678 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 106 3.3E-30 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_3327 04fc955117c7728dd5d880804a6fe678 217 Gene3D G3DSA:1.10.3720.10 5 213 2.4E-46 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3327 04fc955117c7728dd5d880804a6fe678 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 41 210 6.0E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3327 04fc955117c7728dd5d880804a6fe678 217 SUPERFAMILY SSF161098 12 203 1.24E-39 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3741 c02094da221709d9151e961bfd9fac8a 220 Gene3D G3DSA:1.10.10.10 122 218 1.8E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3741 c02094da221709d9151e961bfd9fac8a 220 SMART SM00862 145 216 2.7E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_3741 c02094da221709d9151e961bfd9fac8a 220 Pfam PF00072 Response regulator receiver domain 4 113 2.6E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3741 c02094da221709d9151e961bfd9fac8a 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 5.9E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_3741 c02094da221709d9151e961bfd9fac8a 220 SMART SM00448 1 112 5.2E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_3741 c02094da221709d9151e961bfd9fac8a 220 SUPERFAMILY SSF52172 1 175 2.2E-39 T 12-10-2018 IPR011006 CheY-like superfamily YPK_3741 c02094da221709d9151e961bfd9fac8a 220 Gene3D G3DSA:3.40.50.2300 1 121 5.4E-40 T 12-10-2018 YPK_3655 07fe504eae44674083d7e57354a71e1e 96 Gene3D G3DSA:3.30.70.100 1 96 1.3E-37 T 12-10-2018 YPK_3655 07fe504eae44674083d7e57354a71e1e 96 Hamap MF_02051 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [lsrG]. 1 96 36.396 T 12-10-2018 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase GO:0016853 YPK_3655 07fe504eae44674083d7e57354a71e1e 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 5.0E-15 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain YPK_3655 07fe504eae44674083d7e57354a71e1e 96 SUPERFAMILY SSF54909 1 91 6.19E-24 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 SUPERFAMILY SSF54768 9 75 4.08E-23 T 12-10-2018 YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 1.8E-70 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 Gene3D G3DSA:3.30.230.10 74 167 1.3E-38 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 Gene3D G3DSA:3.30.160.20 1 73 2.3E-33 T 12-10-2018 YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 SUPERFAMILY SSF54211 79 159 5.06E-27 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.65 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 1.8E-28 T 12-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 12-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site YPK_0300 4dcad5d817dc46b1d4f40d1f04561136 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 4.3E-30 T 12-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 YPK_1520 ae625f21aa3007bab51b5ed208ca193a 407 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site YPK_1520 ae625f21aa3007bab51b5ed208ca193a 407 Gene3D G3DSA:3.40.47.10 6 260 1.4E-64 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1520 ae625f21aa3007bab51b5ed208ca193a 407 Gene3D G3DSA:3.40.47.10 261 407 1.5E-52 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1520 ae625f21aa3007bab51b5ed208ca193a 407 SUPERFAMILY SSF53901 216 405 3.7E-61 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1520 ae625f21aa3007bab51b5ed208ca193a 407 SMART SM00825 Beta-ketoacyl synthase 4 407 2.1E-12 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_1520 ae625f21aa3007bab51b5ed208ca193a 407 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 247 1.8E-40 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_1520 ae625f21aa3007bab51b5ed208ca193a 407 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 362 2.8E-30 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_1520 ae625f21aa3007bab51b5ed208ca193a 407 SUPERFAMILY SSF53901 1 254 2.1E-62 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_0080 ce6b3a076f7eead4a3e9c0f02aea21d6 563 Pfam PF00884 Sulfatase 250 538 1.1E-39 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YPK_0080 ce6b3a076f7eead4a3e9c0f02aea21d6 563 Pfam PF08019 Domain of unknown function (DUF1705) 56 221 1.4E-19 T 12-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 YPK_0080 ce6b3a076f7eead4a3e9c0f02aea21d6 563 Gene3D G3DSA:3.40.720.10 244 554 1.1E-55 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_0080 ce6b3a076f7eead4a3e9c0f02aea21d6 563 SUPERFAMILY SSF53649 250 546 3.74E-15 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_2390 9cd96631251d87c364b8e7d7db5c0d18 103 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 103 17.929 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_2390 9cd96631251d87c364b8e7d7db5c0d18 103 Pfam PF02049 Flagellar hook-basal body complex protein FliE 19 103 2.9E-26 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_2390 9cd96631251d87c364b8e7d7db5c0d18 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 32 48 3.8E-17 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_2390 9cd96631251d87c364b8e7d7db5c0d18 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 67 83 3.8E-17 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_2390 9cd96631251d87c364b8e7d7db5c0d18 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 88 101 3.8E-17 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_2390 9cd96631251d87c364b8e7d7db5c0d18 103 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 3 102 8.8E-26 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 88 191 3.3E-12 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 SUPERFAMILY SSF56784 6 216 2.49E-50 T 12-10-2018 IPR036412 HAD-like superfamily YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 190 1.3E-25 T 12-10-2018 YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 Gene3D G3DSA:1.10.150.240 20 91 2.2E-59 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 Gene3D G3DSA:3.40.50.1000 10 202 2.2E-59 T 12-10-2018 IPR023214 HAD superfamily YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 1.0E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 1.0E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 1.0E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1808 643bf0a6c7a29494749fb01ddde590d1 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.0E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_2425 45b7ae7312658bc95de91bf697f30e79 137 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YPK_2425 45b7ae7312658bc95de91bf697f30e79 137 Pfam PF00460 Flagella basal body rod protein 9 39 3.1E-12 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_2425 45b7ae7312658bc95de91bf697f30e79 137 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 135 4.8E-42 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 YPK_2425 45b7ae7312658bc95de91bf697f30e79 137 PIRSF PIRSF002889 1 137 4.9E-41 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 YPK_1850 b34326fdac17369d863341c15586944d 441 SUPERFAMILY SSF101960 48 436 1.15E-113 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPK_1850 b34326fdac17369d863341c15586944d 441 Pfam PF01458 Uncharacterized protein family (UPF0051) 188 411 4.0E-74 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 YPK_1850 b34326fdac17369d863341c15586944d 441 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 150 427 4.6E-89 T 12-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 YPK_1457 0cd4fcc6d9f0cfbfbed8e2a0054064ac 282 Pfam PF13988 Protein of unknown function (DUF4225) 91 255 7.2E-57 T 12-10-2018 IPR025320 Protein of unknown function DUF4225 YPK_3113 bfb432afa5b64bb1a057f2df36d22fc0 378 Pfam PF04865 Baseplate J-like protein 66 340 3.6E-72 T 12-10-2018 IPR006949 Baseplate protein J-like YPK_1361 9a64f8df1397d4a2020a1165c9b2c916 204 SUPERFAMILY SSF55021 22 100 1.83E-16 T 12-10-2018 YPK_1361 9a64f8df1397d4a2020a1165c9b2c916 204 Gene3D G3DSA:3.30.70.260 106 203 1.1E-30 T 12-10-2018 YPK_1361 9a64f8df1397d4a2020a1165c9b2c916 204 SUPERFAMILY SSF55021 106 194 5.0E-19 T 12-10-2018 YPK_1361 9a64f8df1397d4a2020a1165c9b2c916 204 PIRSF PIRSF028103 20 195 3.1E-65 T 12-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 YPK_1361 9a64f8df1397d4a2020a1165c9b2c916 204 Gene3D G3DSA:3.30.70.260 20 104 2.2E-25 T 12-10-2018 YPK_1361 9a64f8df1397d4a2020a1165c9b2c916 204 Pfam PF13740 ACT domain 22 97 5.8E-26 T 12-10-2018 YPK_0715 1e14d25456819286b7a4b4f9858d8e54 145 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 139 1.0E-26 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 YPK_0715 1e14d25456819286b7a4b4f9858d8e54 145 Pfam PF02050 Flagellar FliJ protein 17 136 1.2E-7 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 YPK_0021 a403a7058b0223b371314427ed1c5b1b 190 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 183 2.6E-82 T 12-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 YPK_0021 a403a7058b0223b371314427ed1c5b1b 190 Gene3D G3DSA:1.10.340.30 3 189 1.3E-85 T 12-10-2018 YPK_0021 a403a7058b0223b371314427ed1c5b1b 190 Pfam PF03352 Methyladenine glycosylase 8 184 2.5E-78 T 12-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 YPK_0021 a403a7058b0223b371314427ed1c5b1b 190 SUPERFAMILY SSF48150 4 186 1.57E-80 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 YPK_2947 d84860f3f9cc43f1654f00386800ad67 111 Pfam PF07769 psiF repeat 33 65 4.4E-17 T 12-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat YPK_2947 d84860f3f9cc43f1654f00386800ad67 111 Pfam PF07769 psiF repeat 76 108 8.8E-19 T 12-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat YPK_2040 0b5a91ad9f2f3aeda04b0f7b15fd1c97 206 Gene3D G3DSA:3.90.870.10 1 206 2.8E-71 T 12-10-2018 YPK_2040 0b5a91ad9f2f3aeda04b0f7b15fd1c97 206 SUPERFAMILY SSF55821 1 203 1.86E-66 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPK_2040 0b5a91ad9f2f3aeda04b0f7b15fd1c97 206 Pfam PF01300 Telomere recombination 23 198 8.2E-47 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 YPK_2040 0b5a91ad9f2f3aeda04b0f7b15fd1c97 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 201 5.8E-74 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 YPK_0669 72a32b2082a4eb093c03b93fa4d7c6e4 297 SUPERFAMILY SSF46689 191 242 5.24E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0669 72a32b2082a4eb093c03b93fa4d7c6e4 297 SMART SM00342 208 291 2.5E-27 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0669 72a32b2082a4eb093c03b93fa4d7c6e4 297 Pfam PF12833 Helix-turn-helix domain 214 289 9.7E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0669 72a32b2082a4eb093c03b93fa4d7c6e4 297 SUPERFAMILY SSF46689 244 290 1.12E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0669 72a32b2082a4eb093c03b93fa4d7c6e4 297 Pfam PF06719 AraC-type transcriptional regulator N-terminus 29 179 7.8E-41 T 12-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal YPK_0669 72a32b2082a4eb093c03b93fa4d7c6e4 297 Gene3D G3DSA:1.10.10.60 187 295 6.9E-29 T 12-10-2018 YPK_2176 ebc4341aa1df9cfc44a0ddb2bbe78611 269 SUPERFAMILY SSF48452 190 258 1.92E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_2176 ebc4341aa1df9cfc44a0ddb2bbe78611 269 Pfam PF13369 Transglutaminase-like superfamily 33 184 7.4E-44 T 12-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 YPK_2176 ebc4341aa1df9cfc44a0ddb2bbe78611 269 Pfam PF13371 Tetratricopeptide repeat 187 258 1.4E-25 T 12-10-2018 YPK_2266 835cfa5ec92c1a11ecc319cb4e637d97 280 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 10 222 7.4E-37 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 YPK_2266 835cfa5ec92c1a11ecc319cb4e637d97 280 Gene3D G3DSA:3.20.20.60 5 240 2.6E-89 T 12-10-2018 YPK_2266 835cfa5ec92c1a11ecc319cb4e637d97 280 PIRSF PIRSF015582 1 280 2.6E-79 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like YPK_2266 835cfa5ec92c1a11ecc319cb4e637d97 280 SUPERFAMILY SSF51621 7 233 3.84E-59 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_2584 d833f76e3f28b0578965efac56c6a800 150 SUPERFAMILY SSF160719 33 120 8.11E-17 T 12-10-2018 YPK_2584 d833f76e3f28b0578965efac56c6a800 150 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 7 116 6.8E-24 T 12-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein YPK_2584 d833f76e3f28b0578965efac56c6a800 150 Pfam PF04965 Gene 25-like lysozyme 35 116 3.1E-9 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 Hamap MF_00551 Uridine kinase [udk]. 5 213 41.293 T 12-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 SUPERFAMILY SSF52540 8 205 3.7E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 TIGRFAM TIGR00235 udk: uridine kinase 6 213 4.2E-96 T 12-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 PRINTS PR00988 Uridine kinase signature 157 168 4.1E-38 T 12-10-2018 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 PRINTS PR00988 Uridine kinase signature 8 25 4.1E-38 T 12-10-2018 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 PRINTS PR00988 Uridine kinase signature 87 102 4.1E-38 T 12-10-2018 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 PRINTS PR00988 Uridine kinase signature 143 153 4.1E-38 T 12-10-2018 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 PRINTS PR00988 Uridine kinase signature 179 192 4.1E-38 T 12-10-2018 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 PRINTS PR00988 Uridine kinase signature 42 53 4.1E-38 T 12-10-2018 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 1.6E-43 T 12-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 YPK_2552 e6bba29fee2a35bf44b65ae7f0af004f 213 Gene3D G3DSA:3.40.50.300 4 213 6.9E-62 T 12-10-2018 YPK_0687 db585f1b8501663683bb1cb35768451a 140 Pfam PF01478 Type IV leader peptidase family 12 108 1.8E-12 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 YPK_0687 db585f1b8501663683bb1cb35768451a 140 Gene3D G3DSA:1.20.120.1220 4 139 4.6E-7 T 12-10-2018 YPK_2784 801372c40aedc0625d4c23b0b6f9ea94 194 SUPERFAMILY SSF54001 70 189 1.24E-39 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YPK_2784 801372c40aedc0625d4c23b0b6f9ea94 194 Pfam PF00877 NlpC/P60 family 82 185 1.6E-31 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain YPK_2784 801372c40aedc0625d4c23b0b6f9ea94 194 Gene3D G3DSA:3.90.1720.10 65 193 2.8E-45 T 12-10-2018 YPK_0850 c5b9054de5cd877e039a904884343b6b 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 12-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_0850 c5b9054de5cd877e039a904884343b6b 664 Pfam PF02779 Transketolase, pyrimidine binding domain 355 524 1.8E-46 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_0850 c5b9054de5cd877e039a904884343b6b 664 SUPERFAMILY SSF52518 5 330 6.7E-121 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_0850 c5b9054de5cd877e039a904884343b6b 664 SUPERFAMILY SSF52922 533 664 8.25E-45 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_0850 c5b9054de5cd877e039a904884343b6b 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 1.4E-170 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_0850 c5b9054de5cd877e039a904884343b6b 664 Gene3D G3DSA:3.40.50.920 538 664 4.4E-44 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 YPK_0850 c5b9054de5cd877e039a904884343b6b 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_0850 c5b9054de5cd877e039a904884343b6b 664 Pfam PF02780 Transketolase, C-terminal domain 540 655 5.9E-20 T 12-10-2018 IPR033248 Transketolase, C-terminal domain YPK_0850 c5b9054de5cd877e039a904884343b6b 664 SUPERFAMILY SSF52518 334 526 1.36E-69 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_0850 c5b9054de5cd877e039a904884343b6b 664 SMART SM00861 355 525 1.5E-68 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain YPK_0850 c5b9054de5cd877e039a904884343b6b 664 Gene3D G3DSA:3.40.50.970 1 326 4.0E-136 T 12-10-2018 YPK_0850 c5b9054de5cd877e039a904884343b6b 664 Gene3D G3DSA:3.40.50.970 327 537 6.9E-85 T 12-10-2018 YPK_0850 c5b9054de5cd877e039a904884343b6b 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 12-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 YPK_3880 ac4ea9327af411006912b6dfef7d1fa7 270 Gene3D G3DSA:3.40.50.1000 49 234 1.9E-6 T 12-10-2018 IPR023214 HAD superfamily YPK_3880 ac4ea9327af411006912b6dfef7d1fa7 270 Gene3D G3DSA:3.90.1070.10 111 194 1.9E-6 T 12-10-2018 YPK_3880 ac4ea9327af411006912b6dfef7d1fa7 270 SUPERFAMILY SSF56784 1 238 4.81E-17 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3880 ac4ea9327af411006912b6dfef7d1fa7 270 PIRSF PIRSF030802 1 257 7.2E-145 T 12-10-2018 IPR024197 Uncharacterised conserved protein UCP030802 YPK_2215 8228bfa2281aab9e94fc350e57be4060 268 SUPERFAMILY SSF56281 28 265 3.93E-27 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2215 8228bfa2281aab9e94fc350e57be4060 268 Gene3D G3DSA:3.60.15.10 3 268 1.2E-37 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2215 8228bfa2281aab9e94fc350e57be4060 268 Pfam PF00753 Metallo-beta-lactamase superfamily 36 200 1.0E-12 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_4127 aafc867753a2fa9226e5179bd8918b26 300 SUPERFAMILY SSF160240 209 288 2.09E-24 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 YPK_4127 aafc867753a2fa9226e5179bd8918b26 300 SUPERFAMILY SSF161111 9 207 7.72E-51 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YPK_4127 aafc867753a2fa9226e5179bd8918b26 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 288 9.2E-73 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YPK_4127 aafc867753a2fa9226e5179bd8918b26 300 Pfam PF01545 Cation efflux family 16 206 5.6E-43 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YPK_4127 aafc867753a2fa9226e5179bd8918b26 300 Hamap MF_01425 Ferrous-iron efflux pump FieF [fieF]. 1 300 60.694 T 12-10-2018 IPR023783 Cation efflux pump FieF GO:0006829|GO:0015684|GO:0016021|GO:0046873 YPK_4127 aafc867753a2fa9226e5179bd8918b26 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 287 4.4E-25 T 12-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain YPK_4127 aafc867753a2fa9226e5179bd8918b26 300 Gene3D G3DSA:3.30.70.1350 207 290 4.2E-33 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 YPK_4127 aafc867753a2fa9226e5179bd8918b26 300 Gene3D G3DSA:1.20.1510.10 8 206 3.9E-66 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 Gene3D G3DSA:1.10.10.10 1 84 2.1E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 Gene3D G3DSA:3.40.190.290 89 290 1.9E-45 T 12-10-2018 YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 Pfam PF03466 LysR substrate binding domain 89 289 7.2E-48 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 4.0E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 SUPERFAMILY SSF46785 2 109 3.97E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_2754 19af5fc749ebc59fe9b85b803d69e57a 290 SUPERFAMILY SSF53850 89 289 3.75E-47 T 12-10-2018 YPK_4240 d6a216f6297bd1008f806d786fb1d370 222 Gene3D G3DSA:3.40.50.1000 7 193 2.0E-45 T 12-10-2018 IPR023214 HAD superfamily YPK_4240 d6a216f6297bd1008f806d786fb1d370 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 61 183 6.5E-13 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_4240 d6a216f6297bd1008f806d786fb1d370 222 SUPERFAMILY SSF56784 4 212 7.31E-47 T 12-10-2018 IPR036412 HAD-like superfamily YPK_4240 d6a216f6297bd1008f806d786fb1d370 222 Gene3D G3DSA:1.10.150.240 19 86 2.0E-45 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 YPK_4240 d6a216f6297bd1008f806d786fb1d370 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 183 1.7E-25 T 12-10-2018 YPK_4240 d6a216f6297bd1008f806d786fb1d370 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.7E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_4240 d6a216f6297bd1008f806d786fb1d370 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 1.7E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_4240 d6a216f6297bd1008f806d786fb1d370 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 1.7E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_3301 3d18537a3053854a95b35b035ab4c400 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 29.32 T 12-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 YPK_3301 3d18537a3053854a95b35b035ab4c400 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 197 5.7E-103 T 12-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 YPK_3301 3d18537a3053854a95b35b035ab4c400 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 6.8E-58 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_3301 3d18537a3053854a95b35b035ab4c400 198 PIRSF PIRSF006102 1 198 3.5E-64 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_3598 c88625a97d1e646e4330a22694f8c042 195 SUPERFAMILY SSF53218 3 187 3.4E-48 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily YPK_3598 c88625a97d1e646e4330a22694f8c042 195 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 146 4.1E-40 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_3598 c88625a97d1e646e4330a22694f8c042 195 Gene3D G3DSA:3.40.980.10 2 195 1.3E-64 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily YPK_3598 c88625a97d1e646e4330a22694f8c042 195 SMART SM00852 7 153 8.1E-22 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_3598 c88625a97d1e646e4330a22694f8c042 195 Pfam PF00994 Probable molybdopterin binding domain 8 147 3.6E-28 T 12-10-2018 IPR001453 MoaB/Mog domain YPK_3598 c88625a97d1e646e4330a22694f8c042 195 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 YPK_0992 b5e75c73ffe2f03c2f38a9536e5d84ba 165 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 5 153 4.7E-51 T 12-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 YPK_0992 b5e75c73ffe2f03c2f38a9536e5d84ba 165 SUPERFAMILY SSF52728 5 162 8.63E-47 T 12-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 YPK_0992 b5e75c73ffe2f03c2f38a9536e5d84ba 165 Pfam PF03830 PTS system sorbose subfamily IIB component 6 154 1.7E-47 T 12-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 YPK_0992 b5e75c73ffe2f03c2f38a9536e5d84ba 165 Gene3D G3DSA:3.40.35.10 1 164 2.8E-48 T 12-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 Gene3D G3DSA:3.40.50.150 6 223 2.4E-45 T 12-10-2018 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 PIRSF PIRSF000398 1 251 8.5E-46 T 12-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 8 224 3.1E-24 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 8 24 1.2E-14 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 29 43 1.2E-14 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 170 182 1.2E-14 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 49 62 1.2E-14 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 Gene3D G3DSA:1.10.1020.10 56 150 2.4E-45 T 12-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 YPK_0181 5071b686a60df3724f05c2abeb8581d9 251 SUPERFAMILY SSF53335 2 251 3.93E-61 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 SUPERFAMILY SSF63411 506 727 5.32E-46 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 Pfam PF16187 Middle or third domain of peptidase_M16 402 676 2.4E-56 T 12-10-2018 IPR032632 Peptidase M16, middle/third domain YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 77 100 - T 12-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 Gene3D G3DSA:3.30.830.10 654 919 4.1E-130 T 12-10-2018 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 SUPERFAMILY SSF63411 267 504 5.02E-66 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 Gene3D G3DSA:3.30.830.10 27 273 5.1E-79 T 12-10-2018 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 Gene3D G3DSA:3.30.830.10 275 504 4.5E-68 T 12-10-2018 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 Gene3D G3DSA:3.30.830.10 506 887 4.1E-130 T 12-10-2018 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 SUPERFAMILY SSF63411 35 263 6.23E-52 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 SUPERFAMILY SSF63411 740 933 2.0E-44 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 Pfam PF00675 Insulinase (Peptidase family M16) 57 193 1.6E-33 T 12-10-2018 IPR011765 Peptidase M16, N-terminal YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 Pfam PF05193 Peptidase M16 inactive domain 683 859 2.1E-9 T 12-10-2018 IPR007863 Peptidase M16, C-terminal YPK_1042 1e21ed66d2c7fe81a3ca49698820025b 962 Pfam PF05193 Peptidase M16 inactive domain 218 394 6.1E-19 T 12-10-2018 IPR007863 Peptidase M16, C-terminal YPK_3033 f94daf86aa687638e9d453d7cd2b1a58 196 SMART SM00421 136 193 4.0E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3033 f94daf86aa687638e9d453d7cd2b1a58 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 192 2.1E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3033 f94daf86aa687638e9d453d7cd2b1a58 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 1.8E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3033 f94daf86aa687638e9d453d7cd2b1a58 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 1.8E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3033 f94daf86aa687638e9d453d7cd2b1a58 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 1.8E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_3033 f94daf86aa687638e9d453d7cd2b1a58 196 Gene3D G3DSA:1.10.10.10 101 195 8.3E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3033 f94daf86aa687638e9d453d7cd2b1a58 196 SUPERFAMILY SSF46894 132 193 2.62E-13 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_2328 4438edc70034ab009aeb5be2de8470c9 271 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 6 271 2.0E-115 T 12-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 YPK_1281 0002a00712c56e13f7ba4178aeffe0bb 111 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 12-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 YPK_1281 0002a00712c56e13f7ba4178aeffe0bb 111 SUPERFAMILY SSF54292 4 109 2.57E-34 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_1281 0002a00712c56e13f7ba4178aeffe0bb 111 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 3.0E-61 T 12-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 YPK_1281 0002a00712c56e13f7ba4178aeffe0bb 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 92 3.6E-15 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YPK_1281 0002a00712c56e13f7ba4178aeffe0bb 111 Gene3D G3DSA:3.10.20.30 1 111 1.8E-36 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_1281 0002a00712c56e13f7ba4178aeffe0bb 111 PRINTS PR00355 Adrenodoxin signature 42 52 5.4E-10 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 YPK_1281 0002a00712c56e13f7ba4178aeffe0bb 111 PRINTS PR00355 Adrenodoxin signature 60 74 5.4E-10 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 YPK_1281 0002a00712c56e13f7ba4178aeffe0bb 111 PRINTS PR00355 Adrenodoxin signature 83 91 5.4E-10 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 YPK_3319 9b375cd336db77178ec9a2f0522de624 180 Gene3D G3DSA:2.60.120.10 2 157 7.4E-57 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_3319 9b375cd336db77178ec9a2f0522de624 180 SUPERFAMILY SSF51182 4 178 2.44E-41 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_3319 9b375cd336db77178ec9a2f0522de624 180 Pfam PF03079 ARD/ARD' family 5 165 1.9E-34 T 12-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 YPK_3319 9b375cd336db77178ec9a2f0522de624 180 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 37.589 T 12-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 YPK_0594 2cf3a24462016e990c21646a17252b10 508 Pfam PF02321 Outer membrane efflux protein 307 495 4.8E-21 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YPK_0594 2cf3a24462016e990c21646a17252b10 508 Pfam PF02321 Outer membrane efflux protein 87 280 1.1E-25 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YPK_0594 2cf3a24462016e990c21646a17252b10 508 Gene3D G3DSA:1.20.1600.10 80 499 3.4E-72 T 12-10-2018 YPK_0594 2cf3a24462016e990c21646a17252b10 508 PIRSF PIRSF001892 15 504 4.1E-176 T 12-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 YPK_0594 2cf3a24462016e990c21646a17252b10 508 SUPERFAMILY SSF56954 12 497 1.44E-74 T 12-10-2018 YPK_0540 911bebb9c04da28bcb1be81005777f26 299 Gene3D G3DSA:3.40.1010.10 2 120 8.7E-47 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 YPK_0540 911bebb9c04da28bcb1be81005777f26 299 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 12-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 YPK_0540 911bebb9c04da28bcb1be81005777f26 299 Gene3D G3DSA:3.30.950.10 121 241 5.6E-42 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 YPK_0540 911bebb9c04da28bcb1be81005777f26 299 SUPERFAMILY SSF53790 13 232 3.79E-83 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 YPK_0540 911bebb9c04da28bcb1be81005777f26 299 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 213 5.7E-26 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 YPK_0540 911bebb9c04da28bcb1be81005777f26 299 PIRSF PIRSF005917 2 288 7.6E-107 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 YPK_0540 911bebb9c04da28bcb1be81005777f26 299 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 38.28 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 YPK_0540 911bebb9c04da28bcb1be81005777f26 299 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 284 1.1E-110 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 12-10-2018 IPR020845 AMP-binding, conserved site YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 SUPERFAMILY SSF56801 205 714 1.15E-97 T 12-10-2018 YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 Pfam PF13193 AMP-binding enzyme C-terminal domain 631 701 8.3E-6 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 Pfam PF00501 AMP-binding enzyme 231 619 7.0E-66 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 717 59.806 T 12-10-2018 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 Gene3D G3DSA:3.30.300.30 616 715 8.5E-9 T 12-10-2018 YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 SMART SM00563 30 140 9.4E-23 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 SUPERFAMILY SSF69593 10 164 7.06E-18 T 12-10-2018 YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 Pfam PF01553 Acyltransferase 24 136 6.5E-15 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YPK_1027 d9d54ecb6033136d48ba7311ea875f87 718 Gene3D G3DSA:3.40.50.12780 194 614 8.3E-76 T 12-10-2018 YPK_2783 5968c3959430720421e287e5f1ca4158 233 Gene3D G3DSA:1.20.144.10 124 227 1.7E-8 T 12-10-2018 YPK_2783 5968c3959430720421e287e5f1ca4158 233 SMART SM00014 95 210 2.2E-10 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2783 5968c3959430720421e287e5f1ca4158 233 Pfam PF01569 PAP2 superfamily 97 202 1.2E-7 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2783 5968c3959430720421e287e5f1ca4158 233 SUPERFAMILY SSF48317 26 222 1.44E-17 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPK_2783 5968c3959430720421e287e5f1ca4158 233 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 2 233 42.022 T 12-10-2018 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 YPK_1521 e74f96b59c962c4f465f1b66a53f2b43 231 Gene3D G3DSA:3.40.50.1860 105 216 4.0E-92 T 12-10-2018 YPK_1521 e74f96b59c962c4f465f1b66a53f2b43 231 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 1.9E-74 T 12-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 YPK_1521 e74f96b59c962c4f465f1b66a53f2b43 231 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 80 89 - T 12-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_1521 e74f96b59c962c4f465f1b66a53f2b43 231 Gene3D G3DSA:3.40.50.1860 5 225 4.0E-92 T 12-10-2018 YPK_1521 e74f96b59c962c4f465f1b66a53f2b43 231 SUPERFAMILY SSF53681 119 230 6.54E-34 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_1521 e74f96b59c962c4f465f1b66a53f2b43 231 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 225 1.3E-58 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_1521 e74f96b59c962c4f465f1b66a53f2b43 231 SUPERFAMILY SSF53681 2 117 7.85E-36 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 YPK_3369 99522252a9d7dd01a3cffa107f427aff 532 SUPERFAMILY SSF55931 17 527 4.77E-202 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 YPK_3369 99522252a9d7dd01a3cffa107f427aff 532 Gene3D G3DSA:3.30.590.20 30 530 9.4E-189 T 12-10-2018 YPK_3369 99522252a9d7dd01a3cffa107f427aff 532 Pfam PF04262 Glutamate-cysteine ligase 23 393 2.4E-172 T 12-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 YPK_3369 99522252a9d7dd01a3cffa107f427aff 532 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 19 527 6.8E-257 T 12-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 YPK_3369 99522252a9d7dd01a3cffa107f427aff 532 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 532 230.303 T 12-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.487 T 12-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 SUPERFAMILY SSF52540 4 170 2.7E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 12-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 Pfam PF01202 Shikimate kinase 13 170 8.9E-57 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 59 67 4.3E-29 T 12-10-2018 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 31 44 4.3E-29 T 12-10-2018 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 98 115 4.3E-29 T 12-10-2018 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 7 22 4.3E-29 T 12-10-2018 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 PRINTS PR01100 Shikimate kinase family signature 77 86 4.3E-29 T 12-10-2018 YPK_0225 72be2aa6396ad0abaa3a71920db8eba5 173 Gene3D G3DSA:3.40.50.300 1 173 1.2E-58 T 12-10-2018 YPK_1211 51e2237469d9fe59d9044cd40ba22c57 71 SMART SM00530 3 58 1.6E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1211 51e2237469d9fe59d9044cd40ba22c57 71 Pfam PF01381 Helix-turn-helix 7 52 7.4E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1211 51e2237469d9fe59d9044cd40ba22c57 71 SUPERFAMILY SSF47413 4 53 1.77E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1211 51e2237469d9fe59d9044cd40ba22c57 71 Gene3D G3DSA:1.10.260.40 1 70 4.9E-13 T 12-10-2018 YPK_2190 c3e251cd0c00fba423259db0596e1f43 221 Pfam PF12682 Flavodoxin 71 205 2.4E-24 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YPK_2190 c3e251cd0c00fba423259db0596e1f43 221 Gene3D G3DSA:3.40.50.360 28 218 1.7E-51 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_2190 c3e251cd0c00fba423259db0596e1f43 221 SUPERFAMILY SSF52218 36 217 2.88E-20 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_0663 6b490230598c4367a32ae1c3cfcef3b8 243 SMART SM00563 67 182 1.8E-39 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YPK_0663 6b490230598c4367a32ae1c3cfcef3b8 243 Pfam PF01553 Acyltransferase 62 180 3.4E-32 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YPK_0663 6b490230598c4367a32ae1c3cfcef3b8 243 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 5.7E-48 T 12-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 YPK_0663 6b490230598c4367a32ae1c3cfcef3b8 243 SUPERFAMILY SSF69593 2 237 4.45E-64 T 12-10-2018 YPK_3837 b86a7f3a413f01b980824643ef677b97 141 SUPERFAMILY SSF50203 19 130 1.23E-40 T 12-10-2018 IPR008992 Enterotoxin GO:0009405 YPK_3837 b86a7f3a413f01b980824643ef677b97 141 Gene3D G3DSA:2.40.50.110 21 139 2.8E-47 T 12-10-2018 YPK_2868 ba4dc4eb17746c49d374df8ba5a784b0 285 PIRSF PIRSF030125 7 285 2.3E-109 T 12-10-2018 IPR016946 Uncharacterised conserved protein UCP030125 YPK_2868 ba4dc4eb17746c49d374df8ba5a784b0 285 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 175 273 4.6E-7 T 12-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 YPK_2110 528a3b01f528ec0fae8ca66e2496b7a8 524 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 524 369.14 T 12-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 YPK_2110 528a3b01f528ec0fae8ca66e2496b7a8 524 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 2.8E-283 T 12-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 YPK_2110 528a3b01f528ec0fae8ca66e2496b7a8 524 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 512 4.0E-282 T 12-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 YPK_0078 f93867e517d241665071b3986e76fde7 467 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YPK_0078 f93867e517d241665071b3986e76fde7 467 PIRSF PIRSF006060 1 466 5.1E-73 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_0078 f93867e517d241665071b3986e76fde7 467 Pfam PF00324 Amino acid permease 16 451 5.2E-108 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YPK_0078 f93867e517d241665071b3986e76fde7 467 Gene3D G3DSA:1.20.1740.10 7 464 1.5E-66 T 12-10-2018 YPK_2291 7a774676fb7c8543b2990bddbc3ce1d5 112 Pfam PF00872 Transposase, Mutator family 2 87 4.8E-22 T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_1048 0a1b0c77d65c761398e6f507b11222af 275 SUPERFAMILY SSF69572 6 259 1.15E-63 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 YPK_1048 0a1b0c77d65c761398e6f507b11222af 275 Pfam PF00899 ThiF family 24 262 9.6E-39 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 YPK_1048 0a1b0c77d65c761398e6f507b11222af 275 Gene3D G3DSA:3.40.50.720 1 274 9.4E-113 T 12-10-2018 YPK_1730 46fe5184fed7d11e5a9edd4a5aba22e9 441 Gene3D G3DSA:3.40.50.1240 35 428 2.7E-166 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_1730 46fe5184fed7d11e5a9edd4a5aba22e9 441 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 35 381 9.2E-20 T 12-10-2018 IPR000560 Histidine phosphatase superfamily, clade-2 YPK_1730 46fe5184fed7d11e5a9edd4a5aba22e9 441 SUPERFAMILY SSF53254 31 438 2.35E-68 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_1730 46fe5184fed7d11e5a9edd4a5aba22e9 441 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 36 50 - T 12-10-2018 IPR033379 Histidine acid phosphatase active site YPK_1730 46fe5184fed7d11e5a9edd4a5aba22e9 441 Gene3D G3DSA:3.40.50.1240 162 287 2.7E-166 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 Gene3D G3DSA:3.30.465.10 106 268 2.2E-76 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 Gene3D G3DSA:3.30.70.610 352 434 3.6E-18 T 12-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 Gene3D G3DSA:3.30.70.610 269 346 4.8E-18 T 12-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 SUPERFAMILY SSF55103 275 567 3.71E-113 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 Hamap MF_02092 Quinone-dependent D-lactate dehydrogenase [dld]. 10 568 58.642 T 12-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 Gene3D G3DSA:3.30.1370.20 435 519 1.2E-40 T 12-10-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 Pfam PF01565 FAD binding domain 47 172 2.9E-8 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 PIRSF PIRSF000101 4 569 1.9E-289 T 12-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 SUPERFAMILY SSF56176 12 271 8.18E-71 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 Gene3D G3DSA:3.30.43.10 5 103 7.5E-11 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 YPK_2884 6055621eb73c265ebc24241b0135e2e1 570 Pfam PF09330 D-lactate dehydrogenase, membrane binding 278 567 3.6E-145 T 12-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 YPK_3564 811dfcfc5146597a1d58d7acb2a403ed 503 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 21 495 1.8E-209 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_3564 811dfcfc5146597a1d58d7acb2a403ed 503 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 71 495 1.2E-181 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_2825 8c9fb1308c80e341e9c9dc79deea245a 243 Gene3D G3DSA:3.40.225.10 30 242 2.1E-60 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_2825 8c9fb1308c80e341e9c9dc79deea245a 243 SUPERFAMILY SSF53639 31 222 1.61E-62 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_2825 8c9fb1308c80e341e9c9dc79deea245a 243 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 38 215 1.3E-48 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_2825 8c9fb1308c80e341e9c9dc79deea245a 243 SMART SM01007 37 216 2.1E-64 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 SUPERFAMILY SSF51055 417 462 3.14E-8 T 12-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 SMART SM00060 312 388 1.4E-5 T 12-10-2018 IPR003961 Fibronectin type III GO:0005515 YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 SMART SM00060 220 291 2.5E-8 T 12-10-2018 IPR003961 Fibronectin type III GO:0005515 YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 Gene3D G3DSA:2.60.40.10 218 302 1.4E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 Gene3D G3DSA:2.60.40.10 309 398 4.0E-16 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 SUPERFAMILY SSF49265 218 399 1.65E-22 T 12-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 21 209 1.4E-28 T 12-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 SUPERFAMILY SSF81296 21 212 1.82E-41 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 Gene3D G3DSA:2.10.10.20 417 463 2.2E-6 T 12-10-2018 YPK_0692 dbea42f21d7fe143c6958501b559ea7b 465 Gene3D G3DSA:2.70.50.50 24 212 1.3E-65 T 12-10-2018 YPK_2141 efcf16c55e2839a451b6d41e616487e4 253 Pfam PF00005 ABC transporter 21 150 5.3E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2141 efcf16c55e2839a451b6d41e616487e4 253 SMART SM00382 30 200 1.3E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2141 efcf16c55e2839a451b6d41e616487e4 253 Gene3D G3DSA:3.40.50.300 3 242 3.0E-58 T 12-10-2018 YPK_2141 efcf16c55e2839a451b6d41e616487e4 253 SUPERFAMILY SSF52540 3 219 8.89E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1904 2762de4fed138bdc03e0dc03b2c67395 324 Gene3D G3DSA:3.20.20.120 116 321 2.2E-57 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_1904 2762de4fed138bdc03e0dc03b2c67395 324 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 2 109 3.6E-13 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain YPK_1904 2762de4fed138bdc03e0dc03b2c67395 324 SUPERFAMILY SSF51604 118 319 4.19E-52 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily YPK_1904 2762de4fed138bdc03e0dc03b2c67395 324 SUPERFAMILY SSF54826 3 109 5.3E-27 T 12-10-2018 YPK_1904 2762de4fed138bdc03e0dc03b2c67395 324 SMART SM00922 130 223 6.4E-17 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal YPK_1904 2762de4fed138bdc03e0dc03b2c67395 324 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 YPK_1904 2762de4fed138bdc03e0dc03b2c67395 324 Pfam PF13378 Enolase C-terminal domain-like 136 320 2.7E-23 T 12-10-2018 IPR029065 Enolase C-terminal domain-like YPK_1904 2762de4fed138bdc03e0dc03b2c67395 324 Gene3D G3DSA:3.30.390.10 1 103 1.3E-26 T 12-10-2018 IPR029017 Enolase-like, N-terminal YPK_3849 166bd993915174e0fd6019331fec8c53 104 Gene3D G3DSA:3.30.70.100 1 97 2.7E-38 T 12-10-2018 YPK_3849 166bd993915174e0fd6019331fec8c53 104 SUPERFAMILY SSF54909 1 103 2.1E-37 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_3849 166bd993915174e0fd6019331fec8c53 104 Pfam PF05336 L-rhamnose mutarotase 3 103 3.3E-28 T 12-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 YPK_3849 166bd993915174e0fd6019331fec8c53 104 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 1 104 31.791 T 12-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 YPK_3849 166bd993915174e0fd6019331fec8c53 104 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 3 104 1.6E-56 T 12-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 YPK_3475 ff4c2fc4cc538d53f2a2fe161636781d 437 SUPERFAMILY SSF88713 207 403 9.91E-29 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YPK_3475 ff4c2fc4cc538d53f2a2fe161636781d 437 Gene3D G3DSA:3.20.20.370 180 421 1.2E-58 T 12-10-2018 YPK_3475 ff4c2fc4cc538d53f2a2fe161636781d 437 Pfam PF01522 Polysaccharide deacetylase 243 381 1.7E-18 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 YPK_3462 e490fbe234332cbb1bad0e02693c5818 264 SUPERFAMILY SSF52540 13 237 3.41E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3462 e490fbe234332cbb1bad0e02693c5818 264 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3462 e490fbe234332cbb1bad0e02693c5818 264 Pfam PF00005 ABC transporter 26 175 2.5E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3462 e490fbe234332cbb1bad0e02693c5818 264 SMART SM00382 35 223 3.9E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3462 e490fbe234332cbb1bad0e02693c5818 264 Gene3D G3DSA:3.40.50.300 3 257 2.8E-69 T 12-10-2018 YPK_2949 5090e086e96ff52eeb5a715e29ae24d1 350 Pfam PF00793 DAHP synthetase I family 41 338 4.5E-107 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YPK_2949 5090e086e96ff52eeb5a715e29ae24d1 350 Gene3D G3DSA:3.20.20.70 1 350 2.3E-170 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2949 5090e086e96ff52eeb5a715e29ae24d1 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 3.6E-176 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YPK_2949 5090e086e96ff52eeb5a715e29ae24d1 350 SUPERFAMILY SSF51569 7 348 1.36E-137 T 12-10-2018 YPK_2949 5090e086e96ff52eeb5a715e29ae24d1 350 PIRSF PIRSF001361 1 350 4.3E-164 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YPK_2479 06be050030ade4d14f88e674e8c99b61 99 Pfam PF10765 Protein of unknown function (DUF2591) 29 97 5.2E-14 T 12-10-2018 IPR019701 Bacteriophage P22, NinX YPK_3610 66ceb75f8fd65fc058d46a72ec56d96a 215 SUPERFAMILY SSF53254 1 209 4.06E-58 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_3610 66ceb75f8fd65fc058d46a72ec56d96a 215 SMART SM00855 3 157 2.4E-23 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YPK_3610 66ceb75f8fd65fc058d46a72ec56d96a 215 PIRSF PIRSF000709 2 175 3.9E-11 T 12-10-2018 YPK_3610 66ceb75f8fd65fc058d46a72ec56d96a 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 12-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 YPK_3610 66ceb75f8fd65fc058d46a72ec56d96a 215 Gene3D G3DSA:3.40.50.1240 1 212 3.3E-58 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_3610 66ceb75f8fd65fc058d46a72ec56d96a 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 194 9.3E-59 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YPK_3610 66ceb75f8fd65fc058d46a72ec56d96a 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 51.058 T 12-10-2018 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 YPK_2085 9b272fd0c12ddcb3fd5d8b4698dee850 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 259 9.5E-24 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase YPK_2085 9b272fd0c12ddcb3fd5d8b4698dee850 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 12-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 YPK_2085 9b272fd0c12ddcb3fd5d8b4698dee850 268 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 223 234 - T 12-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 YPK_2085 9b272fd0c12ddcb3fd5d8b4698dee850 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 266 6.5E-105 T 12-10-2018 YPK_2085 9b272fd0c12ddcb3fd5d8b4698dee850 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 266 1.9E-89 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 YPK_2085 9b272fd0c12ddcb3fd5d8b4698dee850 268 Gene3D G3DSA:3.60.10.10 1 267 1.2E-82 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPK_2085 9b272fd0c12ddcb3fd5d8b4698dee850 268 SUPERFAMILY SSF56219 1 268 1.83E-88 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPK_3572 de3cd34acf8dda014ffd851e6c33367b 331 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 322 2.7E-107 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 YPK_3572 de3cd34acf8dda014ffd851e6c33367b 331 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7 325 4.6E-129 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 YPK_3572 de3cd34acf8dda014ffd851e6c33367b 331 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 5 329 36.399 T 12-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 YPK_3572 de3cd34acf8dda014ffd851e6c33367b 331 SUPERFAMILY SSF53659 7 328 1.12E-112 T 12-10-2018 YPK_3572 de3cd34acf8dda014ffd851e6c33367b 331 Gene3D G3DSA:3.40.718.10 1 331 1.7E-135 T 12-10-2018 YPK_3729 6f005a089d5e761571dd5b3ecf6063d1 136 ProSitePatterns PS01319 Ribosome-binding factor A signature. 82 103 - T 12-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 YPK_3729 6f005a089d5e761571dd5b3ecf6063d1 136 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 116 25.789 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 YPK_3729 6f005a089d5e761571dd5b3ecf6063d1 136 SUPERFAMILY SSF89919 2 110 2.62E-31 T 12-10-2018 IPR023799 Ribosome-binding factor A domain superfamily YPK_3729 6f005a089d5e761571dd5b3ecf6063d1 136 Gene3D G3DSA:3.30.300.20 1 111 3.8E-38 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta YPK_3729 6f005a089d5e761571dd5b3ecf6063d1 136 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 103 6.0E-50 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 YPK_3729 6f005a089d5e761571dd5b3ecf6063d1 136 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 121 1.6E-40 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 YPK_3729 6f005a089d5e761571dd5b3ecf6063d1 136 Pfam PF02033 Ribosome-binding factor A 7 115 4.9E-30 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 YPK_2281 f163c2f455cdb535120dbe7a4298815e 337 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 125 1.3E-26 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YPK_2281 f163c2f455cdb535120dbe7a4298815e 337 SUPERFAMILY SSF51735 3 153 1.62E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2281 f163c2f455cdb535120dbe7a4298815e 337 Gene3D G3DSA:3.40.50.720 6 310 3.5E-72 T 12-10-2018 YPK_2281 f163c2f455cdb535120dbe7a4298815e 337 Gene3D G3DSA:3.30.360.10 126 324 3.5E-72 T 12-10-2018 YPK_2281 f163c2f455cdb535120dbe7a4298815e 337 SUPERFAMILY SSF55347 130 303 1.96E-20 T 12-10-2018 YPK_0448 814a52c99a008fd444c5eb35173dabaa 131 SUPERFAMILY SSF69118 2 125 1.83E-34 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YPK_0448 814a52c99a008fd444c5eb35173dabaa 131 Gene3D G3DSA:1.20.1290.10 4 128 1.6E-36 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YPK_0448 814a52c99a008fd444c5eb35173dabaa 131 Pfam PF02627 Carboxymuconolactone decarboxylase family 37 118 5.0E-23 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 YPK_0784 3517b7d754f922ba5b2dfcd05de99089 582 Gene3D G3DSA:1.10.510.40 364 564 7.8E-57 T 12-10-2018 YPK_0784 3517b7d754f922ba5b2dfcd05de99089 582 Gene3D G3DSA:1.10.274.90 3 113 9.3E-14 T 12-10-2018 YPK_0784 3517b7d754f922ba5b2dfcd05de99089 582 Pfam PF04183 IucA / IucC family 132 374 1.3E-67 T 12-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 YPK_0784 3517b7d754f922ba5b2dfcd05de99089 582 Pfam PF06276 Ferric iron reductase FhuF-like transporter 396 551 1.0E-34 T 12-10-2018 IPR022770 Ferric iron reductase FhuF domain YPK_1485 af213a5d90f3e235464913e94003e5b1 1275 Pfam PF06744 Type VI secretion protein IcmF C-terminal 1024 1215 3.9E-45 T 12-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal YPK_1485 af213a5d90f3e235464913e94003e5b1 1275 SUPERFAMILY SSF52540 185 358 2.6E-7 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1485 af213a5d90f3e235464913e94003e5b1 1275 Pfam PF06761 Intracellular multiplication and human macrophage-killing 586 898 4.6E-68 T 12-10-2018 IPR009612 ImcF-related YPK_1485 af213a5d90f3e235464913e94003e5b1 1275 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 72 1267 5.6E-244 T 12-10-2018 IPR017731 Type VI secretion system, IcmF YPK_1485 af213a5d90f3e235464913e94003e5b1 1275 Pfam PF14331 ImcF-related N-terminal domain 253 535 4.8E-75 T 12-10-2018 IPR025743 ImcF-related, N-terminal domain YPK_0302 59daddab34c70f927432b384a57d2e31 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 6.4E-31 T 12-10-2018 IPR021131 Ribosomal protein L18e/L15P YPK_0302 59daddab34c70f927432b384a57d2e31 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 9.0E-52 T 12-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0302 59daddab34c70f927432b384a57d2e31 144 Gene3D G3DSA:3.100.10.10 70 144 1.4E-11 T 12-10-2018 YPK_0302 59daddab34c70f927432b384a57d2e31 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 12-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0302 59daddab34c70f927432b384a57d2e31 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.307 T 12-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 YPK_0302 59daddab34c70f927432b384a57d2e31 144 SUPERFAMILY SSF52080 4 143 7.72E-47 T 12-10-2018 IPR036227 Ribosomal L18e/L15P superfamily YPK_0568 bf1e794d04809bf977ebc7e9e0725a75 233 Gene3D G3DSA:3.40.50.410 25 196 8.4E-19 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_0568 bf1e794d04809bf977ebc7e9e0725a75 233 PIRSF PIRSF020634 22 232 2.6E-91 T 12-10-2018 IPR011392 Tellurite resistance, TerY YPK_0568 bf1e794d04809bf977ebc7e9e0725a75 233 SUPERFAMILY SSF53300 24 182 7.79E-20 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_0568 bf1e794d04809bf977ebc7e9e0725a75 233 SMART SM00327 24 203 3.4E-10 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_0568 bf1e794d04809bf977ebc7e9e0725a75 233 Pfam PF00092 von Willebrand factor type A domain 27 182 4.4E-12 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_0268 94d697e09597cb5298cf8190ccf8c6a9 193 Gene3D G3DSA:2.40.10.330 71 121 1.9E-60 T 12-10-2018 YPK_0268 94d697e09597cb5298cf8190ccf8c6a9 193 SUPERFAMILY SSF54534 2 140 2.36E-32 T 12-10-2018 YPK_0268 94d697e09597cb5298cf8190ccf8c6a9 193 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 136 7.4E-9 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPK_0268 94d697e09597cb5298cf8190ccf8c6a9 193 Gene3D G3DSA:3.10.50.40 3 154 1.9E-60 T 12-10-2018 YPK_1336 0452767da77d05c17d03f91bf492759b 342 SUPERFAMILY SSF53850 21 339 1.28E-60 T 12-10-2018 YPK_1336 0452767da77d05c17d03f91bf492759b 342 Pfam PF13416 Bacterial extracellular solute-binding protein 42 306 1.0E-36 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_1336 0452767da77d05c17d03f91bf492759b 342 Gene3D G3DSA:3.40.190.10 125 326 5.7E-109 T 12-10-2018 YPK_1336 0452767da77d05c17d03f91bf492759b 342 Gene3D G3DSA:3.40.190.10 25 320 5.7E-109 T 12-10-2018 YPK_2581 ec896e9110638694409bad6ec3f3171d 531 Pfam PF00005 ABC transporter 336 467 4.2E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2581 ec896e9110638694409bad6ec3f3171d 531 SMART SM00382 344 513 3.9E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2581 ec896e9110638694409bad6ec3f3171d 531 SMART SM00382 26 228 6.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2581 ec896e9110638694409bad6ec3f3171d 531 Pfam PF00005 ABC transporter 18 184 1.6E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2581 ec896e9110638694409bad6ec3f3171d 531 Pfam PF12848 ABC transporter 224 309 1.8E-20 T 12-10-2018 IPR032781 ABC-transporter extension domain YPK_2581 ec896e9110638694409bad6ec3f3171d 531 SUPERFAMILY SSF52540 6 237 3.1E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2581 ec896e9110638694409bad6ec3f3171d 531 Gene3D G3DSA:3.40.50.300 282 530 2.2E-56 T 12-10-2018 YPK_2581 ec896e9110638694409bad6ec3f3171d 531 SUPERFAMILY SSF52540 298 523 4.86E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2581 ec896e9110638694409bad6ec3f3171d 531 Gene3D G3DSA:3.40.50.300 2 279 6.9E-57 T 12-10-2018 YPK_2585 0171035079fc3a46a7f2365da19557f9 193 Gene3D G3DSA:2.60.40.4150 58 193 4.4E-48 T 12-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily YPK_2585 0171035079fc3a46a7f2365da19557f9 193 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 32 184 9.4E-40 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YPK_2585 0171035079fc3a46a7f2365da19557f9 193 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 29 174 8.4E-25 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 Gene3D G3DSA:1.10.10.10 1 79 6.4E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.3E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 Pfam PF07840 FadR C-terminal domain 72 234 3.4E-74 T 12-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 Gene3D G3DSA:1.20.120.530 80 239 1.9E-43 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 SMART SM00345 12 71 1.0E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 SUPERFAMILY SSF46785 11 87 2.65E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 163.765 T 12-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 SUPERFAMILY SSF48008 79 230 3.01E-66 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_2109 2fb848b9bc1d3a681f33b86de2866633 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 236 1.5E-122 T 12-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 PIRSF PIRSF001220 21 345 3.4E-93 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 Gene3D G3DSA:3.40.50.40 232 345 7.2E-43 T 12-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 PIRSF PIRSF500176 22 345 7.6E-82 T 12-10-2018 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 104 114 - T 12-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 5.8E-23 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 PRINTS PR00139 Asparaginase/glutaminase family signature 103 121 5.8E-23 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 PRINTS PR00139 Asparaginase/glutaminase family signature 279 297 5.8E-23 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 12-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 Pfam PF00710 Asparaginase, N-terminal 25 215 2.3E-61 T 12-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 Gene3D G3DSA:3.40.50.1170 23 231 1.0E-83 T 12-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 SUPERFAMILY SSF53774 23 344 1.13E-106 T 12-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 20 345 3.1E-148 T 12-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 YPK_2674 3ba2e5ac4cc52b72cc04774194e7650e 345 SMART SM00870 25 339 1.9E-139 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2098 6f7133561740e213e9fda12890c959b7 256 Pfam PF06629 MltA-interacting protein MipA 35 255 2.4E-55 T 12-10-2018 IPR010583 MltA-interacting MipA YPK_2098 6f7133561740e213e9fda12890c959b7 256 Gene3D G3DSA:2.40.160.20 149 255 2.6E-5 T 12-10-2018 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 191 323 6.5E-46 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 Pfam PF06480 FtsH Extracellular 8 96 9.8E-15 T 12-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 Gene3D G3DSA:3.40.50.300 144 323 1.4E-70 T 12-10-2018 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 SMART SM00382 187 326 1.9E-26 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3736 ba249a68c457db1214551d45a6f6809e 647 Gene3D G3DSA:1.20.58.760 400 603 2.9E-69 T 12-10-2018 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 Pfam PF01434 Peptidase family M41 385 594 1.1E-81 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 SUPERFAMILY SSF52540 145 394 6.57E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3736 ba249a68c457db1214551d45a6f6809e 647 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 596 3.7E-247 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 ProSitePatterns PS00674 AAA-protein family signature. 294 312 - T 12-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 Gene3D G3DSA:1.10.8.60 325 399 1.1E-28 T 12-10-2018 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 Gene3D G3DSA:2.40.50.920 27 102 6.6E-36 T 12-10-2018 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 SUPERFAMILY SSF140990 405 604 3.14E-72 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 YPK_3736 ba249a68c457db1214551d45a6f6809e 647 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 619 37.379 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 YPK_1743 8fe972eaa7f2ab63e399913e588b9878 232 PRINTS PR01837 MgtC/SapB protein signature 13 32 4.8E-47 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1743 8fe972eaa7f2ab63e399913e588b9878 232 PRINTS PR01837 MgtC/SapB protein signature 32 50 4.8E-47 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1743 8fe972eaa7f2ab63e399913e588b9878 232 PRINTS PR01837 MgtC/SapB protein signature 57 79 4.8E-47 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1743 8fe972eaa7f2ab63e399913e588b9878 232 PRINTS PR01837 MgtC/SapB protein signature 84 108 4.8E-47 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1743 8fe972eaa7f2ab63e399913e588b9878 232 Pfam PF02308 MgtC family 10 129 1.7E-38 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1743 8fe972eaa7f2ab63e399913e588b9878 232 Gene3D G3DSA:3.30.70.260 142 230 2.3E-13 T 12-10-2018 YPK_0537 4d1ce3da71c4d575038b9568d6773d5b 196 Pfam PF13580 SIS domain 9 144 2.9E-32 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_0537 4d1ce3da71c4d575038b9568d6773d5b 196 SUPERFAMILY SSF53697 3 191 4.45E-51 T 12-10-2018 YPK_0537 4d1ce3da71c4d575038b9568d6773d5b 196 Gene3D G3DSA:3.40.50.10490 2 196 3.6E-69 T 12-10-2018 YPK_0537 4d1ce3da71c4d575038b9568d6773d5b 196 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 196 59.568 T 12-10-2018 IPR023070 DnaA initiator-associating protein YPK_3772 8d880e024717e71d7e87096244d110b2 443 SMART SM01091 346 426 1.2E-27 T 12-10-2018 IPR005170 Transporter-associated domain YPK_3772 8d880e024717e71d7e87096244d110b2 443 Gene3D G3DSA:3.30.465.10 347 428 1.9E-29 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_3772 8d880e024717e71d7e87096244d110b2 443 Pfam PF00571 CBS domain 287 333 0.003 T 12-10-2018 IPR000644 CBS domain YPK_3772 8d880e024717e71d7e87096244d110b2 443 SMART SM00116 285 333 10.0 T 12-10-2018 IPR000644 CBS domain YPK_3772 8d880e024717e71d7e87096244d110b2 443 SMART SM00116 221 270 2.1 T 12-10-2018 IPR000644 CBS domain YPK_3772 8d880e024717e71d7e87096244d110b2 443 Pfam PF03471 Transporter associated domain 347 425 1.6E-20 T 12-10-2018 IPR005170 Transporter-associated domain YPK_3772 8d880e024717e71d7e87096244d110b2 443 Gene3D G3DSA:3.10.580.10 193 346 5.1E-33 T 12-10-2018 YPK_3772 8d880e024717e71d7e87096244d110b2 443 Pfam PF01595 Domain of unknown function DUF21 6 197 3.8E-38 T 12-10-2018 IPR002550 CNNM, transmembrane domain YPK_3772 8d880e024717e71d7e87096244d110b2 443 SUPERFAMILY SSF56176 344 429 2.13E-22 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_3772 8d880e024717e71d7e87096244d110b2 443 SUPERFAMILY SSF54631 200 335 5.97E-21 T 12-10-2018 YPK_0413 1b36f089fd512cd2b0db4879954e2bf6 299 SUPERFAMILY SSF51658 8 289 8.15E-37 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily YPK_0413 1b36f089fd512cd2b0db4879954e2bf6 299 Pfam PF01261 Xylose isomerase-like TIM barrel 20 228 2.3E-27 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_0413 1b36f089fd512cd2b0db4879954e2bf6 299 Gene3D G3DSA:3.20.20.150 6 296 5.1E-44 T 12-10-2018 YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 194 227 6.2E-10 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 PIRSF PIRSF000441 76 265 1.8E-59 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 203 231 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 Pfam PF06426 Serine acetyltransferase, N-terminal 10 114 2.8E-37 T 12-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 Gene3D G3DSA:1.10.3130.10 1 143 2.4E-52 T 12-10-2018 YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 84 243 1.6E-73 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 Gene3D G3DSA:2.160.10.10 144 274 2.8E-38 T 12-10-2018 YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 SUPERFAMILY SSF51161 9 261 6.24E-67 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily YPK_4136 085269aa040f054da0de2d9cdc8c2b00 274 SMART SM00971 10 114 1.4E-59 T 12-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 YPK_2012 3259754356bedf95979b85e770267d81 233 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 199 2.8E-63 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_2012 3259754356bedf95979b85e770267d81 233 PIRSF PIRSF006102 1 218 5.0E-77 T 12-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 YPK_2012 3259754356bedf95979b85e770267d81 233 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 209 2.4E-83 T 12-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 YPK_2012 3259754356bedf95979b85e770267d81 233 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 210 28.071 T 12-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 YPK_2036 75456db55a354ea596218c5ff0193008 348 SUPERFAMILY SSF52096 96 298 1.1E-30 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_2036 75456db55a354ea596218c5ff0193008 348 Pfam PF01343 Peptidase family S49 160 304 3.5E-45 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 YPK_2036 75456db55a354ea596218c5ff0193008 348 Gene3D G3DSA:3.40.1750.20 201 265 7.7E-43 T 12-10-2018 YPK_2036 75456db55a354ea596218c5ff0193008 348 Gene3D G3DSA:3.90.226.10 104 300 7.7E-43 T 12-10-2018 YPK_2036 75456db55a354ea596218c5ff0193008 348 Pfam PF08496 Peptidase family S49 N-terminal 2 157 4.9E-58 T 12-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 YPK_0583 a0fd91608527acaba5b604b195150499 761 SUPERFAMILY SSF103515 454 761 5.62E-35 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0583 a0fd91608527acaba5b604b195150499 761 Pfam PF03797 Autotransporter beta-domain 488 739 5.9E-23 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0583 a0fd91608527acaba5b604b195150499 761 SMART SM00869 484 751 5.2E-25 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0583 a0fd91608527acaba5b604b195150499 761 Gene3D G3DSA:2.40.128.130 487 761 3.0E-19 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_3616 1935f925a603ad2a76be1437a0c6571d 436 Gene3D G3DSA:3.30.70.270 256 425 2.0E-54 T 12-10-2018 YPK_3616 1935f925a603ad2a76be1437a0c6571d 436 Pfam PF17152 Periplasmic sensor domain 58 159 1.5E-30 T 12-10-2018 IPR033417 Periplasmic sensor domain CHASE8 YPK_3616 1935f925a603ad2a76be1437a0c6571d 436 SMART SM00267 251 425 6.2E-65 T 12-10-2018 IPR000160 GGDEF domain YPK_3616 1935f925a603ad2a76be1437a0c6571d 436 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 259 419 1.8E-45 T 12-10-2018 IPR000160 GGDEF domain YPK_3616 1935f925a603ad2a76be1437a0c6571d 436 Pfam PF00990 Diguanylate cyclase, GGDEF domain 262 417 9.5E-49 T 12-10-2018 IPR000160 GGDEF domain YPK_3616 1935f925a603ad2a76be1437a0c6571d 436 SUPERFAMILY SSF55073 267 421 5.26E-47 T 12-10-2018 IPR029787 Nucleotide cyclase YPK_1003 bb4a6d12d97c5e7c6cd6886d6ac40649 167 Gene3D G3DSA:2.30.30.830 104 166 1.8E-13 T 12-10-2018 YPK_1003 bb4a6d12d97c5e7c6cd6886d6ac40649 167 Pfam PF11356 Type II secretion system protein C 28 164 5.3E-11 T 12-10-2018 IPR024961 Type II secretion system protein C, N-terminal YPK_1856 aaf62963985984edcbdd28a94776fba1 457 PIRSF PIRSF006603 5 455 1.5E-62 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YPK_1856 aaf62963985984edcbdd28a94776fba1 457 Pfam PF01554 MatE 17 177 1.6E-37 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YPK_1856 aaf62963985984edcbdd28a94776fba1 457 Pfam PF01554 MatE 244 405 5.8E-37 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YPK_1856 aaf62963985984edcbdd28a94776fba1 457 Hamap MF_00400 Multidrug resistance protein MdtK [mdtK]. 1 457 51.021 T 12-10-2018 IPR022913 Multidrug resistance protein MdtK YPK_1856 aaf62963985984edcbdd28a94776fba1 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 422 2.3E-119 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 Pfam PF13802 Galactose mutarotase-like 146 213 1.7E-22 T 12-10-2018 IPR025887 Glycoside hydrolase family 31, N-terminal domain YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 SUPERFAMILY SSF51445 247 594 6.92E-66 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 Gene3D G3DSA:2.60.40.1180 680 790 1.2E-11 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 Gene3D G3DSA:3.20.20.80 244 627 3.9E-111 T 12-10-2018 YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 Gene3D G3DSA:2.60.40.1180 630 679 1.1E-13 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 SUPERFAMILY SSF51011 597 678 4.75E-19 T 12-10-2018 YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 Pfam PF17137 Domain of unknown function (DUF5110) 700 767 1.0E-8 T 12-10-2018 IPR033403 Domain of unknown function DUF5110 YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 Pfam PF01055 Glycosyl hydrolases family 31 238 682 9.8E-116 T 12-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 Gene3D G3DSA:2.60.40.1760 19 242 5.7E-36 T 12-10-2018 YPK_0977 1afe0ef80d1edacef10a6e879e30217c 791 SUPERFAMILY SSF74650 2 243 7.22E-47 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 YPK_3834 e51d4e712dd18c20fbc5e1aa5aa2342d 851 Pfam PF03272 Putative mucin or carbohydrate-binding module 731 847 3.9E-28 T 12-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain YPK_3834 e51d4e712dd18c20fbc5e1aa5aa2342d 851 Pfam PF03272 Putative mucin or carbohydrate-binding module 536 647 9.6E-30 T 12-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain YPK_3834 e51d4e712dd18c20fbc5e1aa5aa2342d 851 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 116 368 1.2E-12 T 12-10-2018 IPR031161 Peptidase family M60 domain YPK_3834 e51d4e712dd18c20fbc5e1aa5aa2342d 851 SMART SM01276 30 333 2.3E-54 T 12-10-2018 IPR031161 Peptidase family M60 domain YPK_2222 5d125a01bae6dab10d066a0371f609b1 406 Pfam PF01979 Amidohydrolase family 64 402 2.1E-14 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YPK_2222 5d125a01bae6dab10d066a0371f609b1 406 SUPERFAMILY SSF51338 6 404 1.68E-27 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_2222 5d125a01bae6dab10d066a0371f609b1 406 Gene3D G3DSA:2.30.40.10 15 402 8.2E-162 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_2222 5d125a01bae6dab10d066a0371f609b1 406 SUPERFAMILY SSF51556 66 366 3.96E-87 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_2222 5d125a01bae6dab10d066a0371f609b1 406 TIGRFAM TIGR01224 hutI: imidazolonepropionase 28 404 1.1E-170 T 12-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_2222 5d125a01bae6dab10d066a0371f609b1 406 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 405 43.009 T 12-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 YPK_2222 5d125a01bae6dab10d066a0371f609b1 406 Gene3D G3DSA:3.20.20.140 67 365 8.2E-162 T 12-10-2018 YPK_2242 b6b4d28678767d51e25bbc2c6a602bbc 405 SUPERFAMILY SSF53092 8 176 2.09E-13 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_2242 b6b4d28678767d51e25bbc2c6a602bbc 405 Gene3D G3DSA:3.40.350.10 13 176 2.4E-14 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_2242 b6b4d28678767d51e25bbc2c6a602bbc 405 SUPERFAMILY SSF55920 174 402 2.22E-47 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like YPK_2242 b6b4d28678767d51e25bbc2c6a602bbc 405 Pfam PF01321 Creatinase/Prolidase N-terminal domain 15 177 1.3E-27 T 12-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 YPK_2242 b6b4d28678767d51e25bbc2c6a602bbc 405 Gene3D G3DSA:3.90.230.10 177 403 8.4E-46 T 12-10-2018 YPK_2242 b6b4d28678767d51e25bbc2c6a602bbc 405 Pfam PF00557 Metallopeptidase family M24 184 388 2.2E-34 T 12-10-2018 IPR000994 Peptidase M24 YPK_2383 2120f85aea3618aae351a8445c95ed16 132 PIRSF PIRSF039090 1 132 2.1E-42 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YPK_2383 2120f85aea3618aae351a8445c95ed16 132 Gene3D G3DSA:1.20.120.340 2 128 1.1E-41 T 12-10-2018 YPK_2383 2120f85aea3618aae351a8445c95ed16 132 Pfam PF02561 Flagellar protein FliS 8 125 1.2E-39 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YPK_2383 2120f85aea3618aae351a8445c95ed16 132 SUPERFAMILY SSF101116 8 130 2.62E-41 T 12-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 YPK_2383 2120f85aea3618aae351a8445c95ed16 132 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 125 2.0E-37 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 YPK_1802 8576a580ba98e39d22e7ee57d2cbfed6 555 Pfam PF06917 Periplasmic pectate lyase 14 540 4.6E-124 T 12-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 YPK_1802 8576a580ba98e39d22e7ee57d2cbfed6 555 Gene3D G3DSA:1.50.10.20 321 376 1.2E-5 T 12-10-2018 YPK_1802 8576a580ba98e39d22e7ee57d2cbfed6 555 Gene3D G3DSA:1.50.10.20 16 309 9.3E-97 T 12-10-2018 YPK_1802 8576a580ba98e39d22e7ee57d2cbfed6 555 Gene3D G3DSA:1.50.10.20 377 519 7.1E-30 T 12-10-2018 YPK_1802 8576a580ba98e39d22e7ee57d2cbfed6 555 PIRSF PIRSF001432 1 555 8.2E-296 T 12-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 YPK_1557 0e194c15d0515d6f0acc33661682eddb 197 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 78 174 5.0E-51 T 12-10-2018 YPK_1557 0e194c15d0515d6f0acc33661682eddb 197 SMART SM00471 24 149 2.0E-7 T 12-10-2018 IPR003607 HD/PDEase domain YPK_1557 0e194c15d0515d6f0acc33661682eddb 197 Pfam PF13023 HD domain 9 159 4.8E-18 T 12-10-2018 IPR006674 HD domain YPK_1557 0e194c15d0515d6f0acc33661682eddb 197 SUPERFAMILY SSF109604 2 191 1.39E-44 T 12-10-2018 YPK_1557 0e194c15d0515d6f0acc33661682eddb 197 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 1 193 45.484 T 12-10-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 YPK_1557 0e194c15d0515d6f0acc33661682eddb 197 Gene3D G3DSA:1.10.3210.10 1 196 4.8E-86 T 12-10-2018 YPK_1136 8eec57ebe472f595c5912a7e523754e9 220 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 14 185 2.1E-30 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPK_1136 8eec57ebe472f595c5912a7e523754e9 220 PIRSF PIRSF005624 2 217 2.6E-47 T 12-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 YPK_1136 8eec57ebe472f595c5912a7e523754e9 220 Hamap MF_01389 Urease accessory protein UreG [ureG]. 10 211 45.13 T 12-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 YPK_1136 8eec57ebe472f595c5912a7e523754e9 220 Gene3D G3DSA:3.40.50.300 11 211 4.4E-45 T 12-10-2018 YPK_1136 8eec57ebe472f595c5912a7e523754e9 220 SUPERFAMILY SSF52540 8 206 2.18E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1136 8eec57ebe472f595c5912a7e523754e9 220 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 13 209 6.6E-79 T 12-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.40.50.800 532 642 6.1E-31 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 SMART SM00863 170 219 2.6E-19 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 34.002 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 SUPERFAMILY SSF81271 3 61 1.85E-16 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Pfam PF03129 Anticodon binding domain 541 628 4.4E-21 T 12-10-2018 IPR004154 Anticodon-binding YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 529 2.8E-50 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 SUPERFAMILY SSF55681 243 525 5.84E-96 T 12-10-2018 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 SUPERFAMILY SSF52954 529 636 1.15E-31 T 12-10-2018 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.30.980.10 69 222 3.9E-62 T 12-10-2018 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.30.54.20 130 187 3.9E-62 T 12-10-2018 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.30.930.10 223 531 2.0E-128 T 12-10-2018 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 9.0E-55 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 9.0E-55 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 9.0E-55 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 9.0E-55 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 9.0E-55 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Gene3D G3DSA:3.10.20.30 1 64 3.6E-22 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 SUPERFAMILY SSF55186 63 241 7.19E-64 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 3.8E-14 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 4.0E-242 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 YPK_1820 f861d3aa4b80df4efebdb340763c66f5 642 Pfam PF02824 TGS domain 4 61 1.4E-11 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 1.2E-102 T 12-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 12-10-2018 IPR014762 DNA mismatch repair, conserved site YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 2.1E-38 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 Gene3D G3DSA:2.30.42.20 455 630 2.4E-69 T 12-10-2018 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 121 1.5E-12 T 12-10-2018 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 SMART SM01340 212 330 7.6E-57 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 632 26.091 T 12-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 SUPERFAMILY SSF118116 453 631 1.96E-43 T 12-10-2018 IPR037198 MutL, C-terminal domain superfamily YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 SUPERFAMILY SSF54211 191 330 4.55E-38 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 SUPERFAMILY SSF55874 1 204 1.17E-56 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 Gene3D G3DSA:3.30.230.10 217 329 3.8E-41 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 Gene3D G3DSA:3.30.1370.100 499 587 2.4E-69 T 12-10-2018 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 Pfam PF08676 MutL C terminal dimerisation domain 455 584 1.1E-26 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 SMART SM00853 458 593 8.2E-15 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 YPK_3801 acc6b6b5fa8b146f67ed9725f3e56c01 635 Gene3D G3DSA:3.30.565.10 1 216 1.2E-71 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_1144 fae58e36ded1eb1b3cdb33b16390f385 105 SUPERFAMILY SSF52794 4 103 7.85E-32 T 12-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YPK_1144 fae58e36ded1eb1b3cdb33b16390f385 105 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 1.5E-17 T 12-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YPK_1144 fae58e36ded1eb1b3cdb33b16390f385 105 Gene3D G3DSA:3.40.50.2300 1 105 4.2E-33 T 12-10-2018 YPK_3363 d72e92d99b7a164bdb31609c01bc863a 182 SUPERFAMILY SSF50346 106 182 2.35E-19 T 12-10-2018 IPR011033 PRC-barrel-like superfamily YPK_3363 d72e92d99b7a164bdb31609c01bc863a 182 Gene3D G3DSA:2.30.30.240 101 182 1.5E-31 T 12-10-2018 YPK_3363 d72e92d99b7a164bdb31609c01bc863a 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 14 182 4.8E-60 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 YPK_3363 d72e92d99b7a164bdb31609c01bc863a 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 13 182 24.289 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 YPK_3363 d72e92d99b7a164bdb31609c01bc863a 182 Pfam PF01782 RimM N-terminal domain 16 95 8.9E-26 T 12-10-2018 IPR002676 RimM, N-terminal GO:0006364 YPK_3363 d72e92d99b7a164bdb31609c01bc863a 182 SUPERFAMILY SSF50447 13 99 8.83E-24 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_3363 d72e92d99b7a164bdb31609c01bc863a 182 Gene3D G3DSA:2.40.30.60 5 100 2.9E-34 T 12-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 YPK_3363 d72e92d99b7a164bdb31609c01bc863a 182 Pfam PF05239 PRC-barrel domain 103 177 3.9E-9 T 12-10-2018 IPR027275 PRC-barrel domain YPK_4105 cd08454a1d46e3bc9b40ddb38ee6974b 305 PIRSF PIRSF005355 2 305 2.9E-87 T 12-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 YPK_4105 cd08454a1d46e3bc9b40ddb38ee6974b 305 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 9 302 21.146 T 12-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 YPK_4105 cd08454a1d46e3bc9b40ddb38ee6974b 305 Pfam PF01040 UbiA prenyltransferase family 29 276 1.7E-36 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 YPK_4105 cd08454a1d46e3bc9b40ddb38ee6974b 305 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 18 301 2.4E-128 T 12-10-2018 YPK_2446 6745016f26c6f574ca6d937860429eb7 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPK_2446 6745016f26c6f574ca6d937860429eb7 460 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 6 460 73.527 T 12-10-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 YPK_2446 6745016f26c6f574ca6d937860429eb7 460 Gene3D G3DSA:3.30.70.330 388 459 2.2E-20 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily YPK_2446 6745016f26c6f574ca6d937860429eb7 460 SUPERFAMILY SSF52540 74 354 8.83E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2446 6745016f26c6f574ca6d937860429eb7 460 SMART SM00487 23 220 4.4E-55 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_2446 6745016f26c6f574ca6d937860429eb7 460 Gene3D G3DSA:3.40.50.300 216 387 3.4E-47 T 12-10-2018 YPK_2446 6745016f26c6f574ca6d937860429eb7 460 Pfam PF00270 DEAD/DEAH box helicase 28 194 2.4E-44 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_2446 6745016f26c6f574ca6d937860429eb7 460 Pfam PF00271 Helicase conserved C-terminal domain 237 337 2.8E-28 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2446 6745016f26c6f574ca6d937860429eb7 460 Pfam PF03880 DbpA RNA binding domain 387 457 8.1E-23 T 12-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain YPK_2446 6745016f26c6f574ca6d937860429eb7 460 SMART SM00490 256 337 4.1E-30 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2446 6745016f26c6f574ca6d937860429eb7 460 Gene3D G3DSA:3.40.50.300 4 210 1.4E-68 T 12-10-2018 YPK_2423 d97d4d9aa26d4bdf91890ef298586dda 228 Gene3D G3DSA:2.30.30.910 88 222 5.8E-35 T 12-10-2018 YPK_2423 d97d4d9aa26d4bdf91890ef298586dda 228 Pfam PF03963 Flagellar hook capping protein - N-terminal region 15 78 1.1E-23 T 12-10-2018 IPR005648 Flagellar hook capping protein YPK_2423 d97d4d9aa26d4bdf91890ef298586dda 228 Pfam PF13860 FlgD Ig-like domain 117 186 6.9E-24 T 12-10-2018 IPR025965 FlgD Ig-like domain YPK_2423 d97d4d9aa26d4bdf91890ef298586dda 228 Pfam PF13861 FlgD Tudor-like domain 87 225 4.8E-16 T 12-10-2018 IPR025963 FlgD Tudor-like domain YPK_2423 d97d4d9aa26d4bdf91890ef298586dda 228 Gene3D G3DSA:2.60.40.4070 104 194 5.8E-35 T 12-10-2018 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 206 1.6E-78 T 12-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Gene3D G3DSA:3.40.1010.10 214 330 4.2E-45 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Gene3D G3DSA:3.30.160.110 113 148 6.7E-19 T 12-10-2018 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 SUPERFAMILY SSF53790 213 456 5.37E-80 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Gene3D G3DSA:3.30.950.10 331 470 2.3E-45 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 PIRSF PIRSF036426 1 465 2.5E-204 T 12-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 9.6E-8 T 12-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 220 234 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 SUPERFAMILY SSF75615 114 211 1.31E-28 T 12-10-2018 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 52.388 T 12-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 295 328 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 SUPERFAMILY SSF51735 2 113 9.17E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Gene3D G3DSA:1.10.8.210 149 207 4.7E-15 T 12-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 217 426 2.9E-48 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 215 448 1.0E-92 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Pfam PF13241 Putative NAD(P)-binding 6 115 6.2E-29 T 12-10-2018 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Pfam PF10414 Sirohaem synthase dimerisation region 151 205 1.6E-20 T 12-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 YPK_3437 5ee2dbc1d536117ce74eaa92e6b7b3e5 472 Gene3D G3DSA:3.40.50.720 1 112 3.1E-32 T 12-10-2018 YPK_1465 501153da0d04d81cb0998b0f0da1af0f 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 160 2.1E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1465 501153da0d04d81cb0998b0f0da1af0f 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 130 144 2.1E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1465 501153da0d04d81cb0998b0f0da1af0f 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 172 2.1E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1465 501153da0d04d81cb0998b0f0da1af0f 200 SUPERFAMILY SSF46894 115 185 2.41E-13 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1465 501153da0d04d81cb0998b0f0da1af0f 200 Gene3D G3DSA:1.10.10.10 104 189 2.2E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1465 501153da0d04d81cb0998b0f0da1af0f 200 ProSitePatterns PS00622 LuxR-type HTH domain signature. 144 171 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1465 501153da0d04d81cb0998b0f0da1af0f 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 129 184 2.9E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_1465 501153da0d04d81cb0998b0f0da1af0f 200 SMART SM00421 127 184 6.3E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2836 ca6618d5f9acc0ea151c5e93e3e44902 388 Pfam PF00144 Beta-lactamase 50 367 1.1E-61 T 12-10-2018 IPR001466 Beta-lactamase-related YPK_2836 ca6618d5f9acc0ea151c5e93e3e44902 388 SUPERFAMILY SSF56601 43 367 1.23E-67 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_2836 ca6618d5f9acc0ea151c5e93e3e44902 388 Gene3D G3DSA:3.40.710.10 37 386 1.2E-138 T 12-10-2018 YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 12-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 Gene3D G3DSA:3.30.70.600 1 103 3.9E-38 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 SMART SM01403 7 101 1.0E-56 T 12-10-2018 IPR027486 Ribosomal protein S10 domain YPK_0282 45d53e98b9ae88d2567b52bea3a6f87c 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 12-10-2018 IPR027486 Ribosomal protein S10 domain YPK_0782 a6d4a1626d7a600d1aaf6a61f8c28ad8 726 SUPERFAMILY SSF56935 25 724 1.17E-90 T 12-10-2018 YPK_0782 a6d4a1626d7a600d1aaf6a61f8c28ad8 726 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 709 726 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site YPK_0782 a6d4a1626d7a600d1aaf6a61f8c28ad8 726 Gene3D G3DSA:2.170.130.10 24 146 2.3E-21 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_0782 a6d4a1626d7a600d1aaf6a61f8c28ad8 726 Gene3D G3DSA:2.40.170.20 151 726 2.7E-57 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_0782 a6d4a1626d7a600d1aaf6a61f8c28ad8 726 Pfam PF07715 TonB-dependent Receptor Plug Domain 39 140 1.0E-16 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_0782 a6d4a1626d7a600d1aaf6a61f8c28ad8 726 Pfam PF00593 TonB dependent receptor 233 723 3.7E-33 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_0782 a6d4a1626d7a600d1aaf6a61f8c28ad8 726 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 40 726 2.3E-127 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 YPK_3816 f749f847841d9b858c8d240ce66b3af3 118 PIRSF PIRSF000179 1 118 1.5E-49 T 12-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 YPK_3816 f749f847841d9b858c8d240ce66b3af3 118 SUPERFAMILY SSF81343 1 118 5.23E-51 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3816 f749f847841d9b858c8d240ce66b3af3 118 Gene3D G3DSA:1.20.1300.10 1 118 1.4E-50 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_3816 f749f847841d9b858c8d240ce66b3af3 118 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 1 118 26.379 T 12-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 YPK_3816 f749f847841d9b858c8d240ce66b3af3 118 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 3 118 6.0E-48 T 12-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 YPK_3816 f749f847841d9b858c8d240ce66b3af3 118 Pfam PF02313 Fumarate reductase subunit D 5 116 8.8E-50 T 12-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 YPK_0581 25d66b5680fd003716911fd5cfc44e11 138 Pfam PF15599 Immunity protein 63 44 124 1.6E-29 T 12-10-2018 IPR028952 Immunity protein 63 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 PRINTS PR00421 Thioredoxin family signature 55 63 6.7E-8 T 12-10-2018 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 PRINTS PR00421 Thioredoxin family signature 63 72 6.7E-8 T 12-10-2018 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 PRINTS PR00421 Thioredoxin family signature 103 114 6.7E-8 T 12-10-2018 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 Pfam PF00085 Thioredoxin 37 137 1.3E-26 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 TIGRFAM TIGR01068 thioredoxin: thioredoxin 43 138 4.4E-33 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 SUPERFAMILY SSF52833 25 144 8.18E-37 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 Gene3D G3DSA:3.40.30.10 35 145 2.3E-33 T 12-10-2018 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 Gene3D G3DSA:2.20.28.140 1 34 2.6E-20 T 12-10-2018 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 PIRSF PIRSF000077 35 139 1.7E-29 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 YPK_3341 9e44d2d69f4643ee5a967dde82e2930a 145 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YPK_1728 c64d360b70f2d49f7d4461018beada66 135 Pfam PF01638 HxlR-like helix-turn-helix 38 125 3.9E-28 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type YPK_1728 c64d360b70f2d49f7d4461018beada66 135 Gene3D G3DSA:1.10.10.10 12 134 5.4E-39 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1728 c64d360b70f2d49f7d4461018beada66 135 SUPERFAMILY SSF46785 23 128 9.75E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1956 4b29db5cd055a78b1e315af2fced68b7 272 SUPERFAMILY SSF52540 16 248 1.2E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1956 4b29db5cd055a78b1e315af2fced68b7 272 SMART SM00382 44 223 1.0E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1956 4b29db5cd055a78b1e315af2fced68b7 272 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1956 4b29db5cd055a78b1e315af2fced68b7 272 Pfam PF00005 ABC transporter 35 174 6.7E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1956 4b29db5cd055a78b1e315af2fced68b7 272 Gene3D G3DSA:3.40.50.300 15 267 7.2E-63 T 12-10-2018 YPK_3687 60098bfea136e6d1f25b802dba9e389f 349 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 128 349 3.0E-42 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3687 60098bfea136e6d1f25b802dba9e389f 349 SUPERFAMILY SSF161098 106 337 1.02E-20 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2558 72502283a690d3213c9657be2b51a228 393 Gene3D G3DSA:1.20.1250.20 5 387 3.8E-46 T 12-10-2018 YPK_2558 72502283a690d3213c9657be2b51a228 393 Pfam PF07690 Major Facilitator Superfamily 11 352 1.0E-38 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2558 72502283a690d3213c9657be2b51a228 393 SUPERFAMILY SSF103473 11 389 1.57E-51 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2957 3447278c7d0a129a15aea01a10d30812 393 TIGRFAM TIGR02794 tolA_full: protein TolA 18 392 4.2E-99 T 12-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 YPK_2957 3447278c7d0a129a15aea01a10d30812 393 Gene3D G3DSA:3.30.1150.10 315 387 1.3E-34 T 12-10-2018 YPK_2957 3447278c7d0a129a15aea01a10d30812 393 Pfam PF06519 TolA C-terminal 298 390 7.8E-37 T 12-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 YPK_2957 3447278c7d0a129a15aea01a10d30812 393 SUPERFAMILY SSF74653 305 393 5.3E-20 T 12-10-2018 YPK_2902 4b28042ba2509d121b5d1176e65a542b 391 Pfam PF12698 ABC-2 family transporter protein 44 383 1.3E-42 T 12-10-2018 YPK_3805 dd9fecc04a9408b7459d12101ae9a0a7 379 SUPERFAMILY SSF46548 139 256 4.29E-20 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 YPK_3805 dd9fecc04a9408b7459d12101ae9a0a7 379 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_3805 dd9fecc04a9408b7459d12101ae9a0a7 379 Pfam PF13484 4Fe-4S double cluster binding domain 192 256 8.1E-19 T 12-10-2018 YPK_3805 dd9fecc04a9408b7459d12101ae9a0a7 379 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 1 315 45.203 T 12-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 YPK_3805 dd9fecc04a9408b7459d12101ae9a0a7 379 Pfam PF08331 Domain of unknown function (DUF1730) 30 96 4.2E-21 T 12-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 YPK_3805 dd9fecc04a9408b7459d12101ae9a0a7 379 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 3 348 7.4E-138 T 12-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 YPK_3939 c482e67b3a2ea5a147057eaf01889b42 260 Hamap MF_00901 3'-5' ssDNA/RNA exonuclease TatD [tatD]. 1 260 63.171 T 12-10-2018 IPR024918 3'-5' ssDNA/RNA exonuclease TatD GO:0008408 YPK_3939 c482e67b3a2ea5a147057eaf01889b42 260 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YPK_3939 c482e67b3a2ea5a147057eaf01889b42 260 PIRSF PIRSF005902 1 260 4.2E-72 T 12-10-2018 IPR001130 TatD family GO:0016788 YPK_3939 c482e67b3a2ea5a147057eaf01889b42 260 Pfam PF01026 TatD related DNase 2 257 4.9E-65 T 12-10-2018 IPR001130 TatD family GO:0016788 YPK_3939 c482e67b3a2ea5a147057eaf01889b42 260 Gene3D G3DSA:3.20.20.140 1 260 1.4E-94 T 12-10-2018 YPK_3939 c482e67b3a2ea5a147057eaf01889b42 260 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 YPK_3939 c482e67b3a2ea5a147057eaf01889b42 260 SUPERFAMILY SSF51556 1 259 2.52E-80 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_0998 67081af728c21d8859c3211ec4d7b95e 728 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 355 713 3.3E-14 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_0998 67081af728c21d8859c3211ec4d7b95e 728 SMART SM00869 447 718 1.1E-38 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0998 67081af728c21d8859c3211ec4d7b95e 728 Pfam PF03797 Autotransporter beta-domain 450 707 1.4E-46 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_0998 67081af728c21d8859c3211ec4d7b95e 728 SUPERFAMILY SSF103515 420 728 2.88E-41 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_0998 67081af728c21d8859c3211ec4d7b95e 728 Gene3D G3DSA:2.40.128.130 420 728 1.2E-51 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_3207 c3068fda8dc1e0af4926ffe0b3c9344b 395 Gene3D G3DSA:2.40.50.100 65 209 4.5E-110 T 12-10-2018 YPK_3207 c3068fda8dc1e0af4926ffe0b3c9344b 395 Pfam PF00529 HlyD membrane-fusion protein of T1SS 295 361 5.8E-11 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_3207 c3068fda8dc1e0af4926ffe0b3c9344b 395 SUPERFAMILY SSF111369 53 301 1.96E-86 T 12-10-2018 YPK_3207 c3068fda8dc1e0af4926ffe0b3c9344b 395 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 294 1.4E-9 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPK_3207 c3068fda8dc1e0af4926ffe0b3c9344b 395 Gene3D G3DSA:1.10.287.470 100 173 4.5E-110 T 12-10-2018 YPK_3207 c3068fda8dc1e0af4926ffe0b3c9344b 395 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 377 9.8E-80 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_3207 c3068fda8dc1e0af4926ffe0b3c9344b 395 Gene3D G3DSA:2.40.30.170 53 304 4.5E-110 T 12-10-2018 YPK_3207 c3068fda8dc1e0af4926ffe0b3c9344b 395 Gene3D G3DSA:2.40.420.20 305 374 4.5E-110 T 12-10-2018 YPK_1908 694288260a11fb0917dc5a75d579bf1b 279 Gene3D G3DSA:1.10.1660.10 1 124 9.9E-19 T 12-10-2018 YPK_1908 694288260a11fb0917dc5a75d579bf1b 279 Pfam PF13411 MerR HTH family regulatory protein 2 67 3.4E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_1908 694288260a11fb0917dc5a75d579bf1b 279 SUPERFAMILY SSF46955 1 103 3.39E-18 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_1908 694288260a11fb0917dc5a75d579bf1b 279 SMART SM00422 2 70 1.6E-8 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_0108 0d2db5cfb4984d17139be472085f19b3 289 Pfam PF11692 Protein of unknown function (DUF3289) 13 281 2.5E-111 T 12-10-2018 IPR017483 Conserved hypothetical protein CHP03034 YPK_0108 0d2db5cfb4984d17139be472085f19b3 289 TIGRFAM TIGR03034 TIGR03034: conserved hypothetical protein 12 281 1.2E-139 T 12-10-2018 IPR017483 Conserved hypothetical protein CHP03034 YPK_0710 a2e4284e90fcd117c08f618dbd5b85b6 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 90 106 2.9E-8 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_0710 a2e4284e90fcd117c08f618dbd5b85b6 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 111 124 2.9E-8 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_0710 a2e4284e90fcd117c08f618dbd5b85b6 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 56 72 2.9E-8 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_0710 a2e4284e90fcd117c08f618dbd5b85b6 126 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 52 124 2.8E-13 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_0710 a2e4284e90fcd117c08f618dbd5b85b6 126 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 24 126 13.032 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_0710 a2e4284e90fcd117c08f618dbd5b85b6 126 Pfam PF02049 Flagellar hook-basal body complex protein FliE 50 125 2.0E-21 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 YPK_3164 cb1980e65a7ca669890bc807aff85674 139 Gene3D G3DSA:1.10.1660.10 1 125 3.1E-32 T 12-10-2018 YPK_3164 cb1980e65a7ca669890bc807aff85674 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.7E-5 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_3164 cb1980e65a7ca669890bc807aff85674 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.7E-5 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_3164 cb1980e65a7ca669890bc807aff85674 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 4.7E-5 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_3164 cb1980e65a7ca669890bc807aff85674 139 Pfam PF13411 MerR HTH family regulatory protein 1 68 1.3E-19 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_3164 cb1980e65a7ca669890bc807aff85674 139 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 6.8E-57 T 12-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 YPK_3164 cb1980e65a7ca669890bc807aff85674 139 SMART SM00422 1 70 4.0E-29 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 YPK_3164 cb1980e65a7ca669890bc807aff85674 139 SUPERFAMILY SSF46955 1 126 7.69E-35 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_0260 2e57084693774a09201c9463ee71007f 284 Gene3D G3DSA:1.10.3720.10 78 277 6.0E-30 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0260 2e57084693774a09201c9463ee71007f 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 278 2.6E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0260 2e57084693774a09201c9463ee71007f 284 SUPERFAMILY SSF161098 84 266 3.27E-36 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1357 d7e5a1d2e190f9ce49c933473ed3d50a 354 Pfam PF01594 AI-2E family transporter 19 345 1.4E-81 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like YPK_4197 de3cbfafce235944bb90a6e7d18fa870 328 Gene3D G3DSA:1.10.510.10 60 258 6.4E-124 T 12-10-2018 YPK_4197 de3cbfafce235944bb90a6e7d18fa870 328 Gene3D G3DSA:3.30.200.70 13 108 6.4E-124 T 12-10-2018 YPK_4197 de3cbfafce235944bb90a6e7d18fa870 328 Gene3D G3DSA:1.20.1270.170 149 307 6.4E-124 T 12-10-2018 YPK_4197 de3cbfafce235944bb90a6e7d18fa870 328 Pfam PF01636 Phosphotransferase enzyme family 33 256 2.4E-46 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase YPK_4197 de3cbfafce235944bb90a6e7d18fa870 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 46.178 T 12-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 YPK_4197 de3cbfafce235944bb90a6e7d18fa870 328 SUPERFAMILY SSF56112 6 327 6.85E-90 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily YPK_3965 a63953b274f6d94fcb6c4f8a7767aa17 228 SUPERFAMILY SSF49354 20 126 8.63E-7 T 12-10-2018 IPR008962 PapD-like superfamily YPK_3965 a63953b274f6d94fcb6c4f8a7767aa17 228 Gene3D G3DSA:2.60.40.10 19 152 2.0E-26 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 Gene3D G3DSA:1.10.3210.10 151 258 3.8E-16 T 12-10-2018 YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 Gene3D G3DSA:1.10.3210.10 1 144 3.7E-44 T 12-10-2018 YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 31 504 5.6E-126 T 12-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 Pfam PF13286 Phosphohydrolase-associated domain 461 501 7.7E-6 T 12-10-2018 IPR026875 Phosphohydrolase-associated domain YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 Gene3D G3DSA:1.10.3410.10 261 391 2.5E-22 T 12-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 Pfam PF01966 HD domain 66 134 2.6E-10 T 12-10-2018 IPR006674 HD domain YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 SUPERFAMILY SSF109604 30 503 4.97E-64 T 12-10-2018 YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 506 53.279 T 12-10-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 YPK_3453 808ad9c8cbc5df8b9b936c0b9ab29adf 506 SMART SM00471 62 283 1.1E-11 T 12-10-2018 IPR003607 HD/PDEase domain YPK_4235 9498abc876852631259a6a63adfdb67a 238 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 11 219 5.6E-74 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 YPK_4235 9498abc876852631259a6a63adfdb67a 238 PIRSF PIRSF003107 5 224 9.6E-68 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 YPK_4235 9498abc876852631259a6a63adfdb67a 238 Pfam PF01895 PhoU domain 24 109 2.5E-22 T 12-10-2018 IPR026022 PhoU domain YPK_4235 9498abc876852631259a6a63adfdb67a 238 Pfam PF01895 PhoU domain 126 210 7.2E-17 T 12-10-2018 IPR026022 PhoU domain YPK_4235 9498abc876852631259a6a63adfdb67a 238 Gene3D G3DSA:1.20.58.220 1 114 1.7E-42 T 12-10-2018 IPR038078 PhoU-like domain superfamily YPK_4235 9498abc876852631259a6a63adfdb67a 238 SUPERFAMILY SSF109755 11 228 1.67E-70 T 12-10-2018 YPK_4235 9498abc876852631259a6a63adfdb67a 238 Gene3D G3DSA:1.20.58.220 117 232 2.2E-32 T 12-10-2018 IPR038078 PhoU-like domain superfamily YPK_0542 4da070f5da2512349adb1d8e876a361e 297 SUPERFAMILY SSF46785 8 91 1.69E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0542 4da070f5da2512349adb1d8e876a361e 297 Gene3D G3DSA:3.40.190.290 112 288 3.4E-13 T 12-10-2018 YPK_0542 4da070f5da2512349adb1d8e876a361e 297 Pfam PF03466 LysR substrate binding domain 120 280 3.3E-18 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_0542 4da070f5da2512349adb1d8e876a361e 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.0E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0542 4da070f5da2512349adb1d8e876a361e 297 SUPERFAMILY SSF53850 93 288 6.64E-23 T 12-10-2018 YPK_0542 4da070f5da2512349adb1d8e876a361e 297 Gene3D G3DSA:1.10.10.10 6 94 5.2E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 Pfam PF00710 Asparaginase, N-terminal 6 188 1.9E-63 T 12-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 12-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 SUPERFAMILY SSF53774 3 335 6.41E-111 T 12-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 PIRSF PIRSF001220 1 334 4.0E-99 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 SMART SM00870 5 323 8.5E-138 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 PIRSF PIRSF500176 2 332 5.4E-113 T 12-10-2018 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 Gene3D G3DSA:3.40.50.40 209 338 1.1E-48 T 12-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 12-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 1.0E-16 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 1.0E-16 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 1.0E-16 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 8.1E-128 T 12-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 YPK_2092 a85bdcaf8eae7801f82001f3dad05d7e 338 Gene3D G3DSA:3.40.50.1170 1 208 2.6E-92 T 12-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 YPK_0868 e43667fc284c08e165691a2d2cefeed5 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 YPK_0868 e43667fc284c08e165691a2d2cefeed5 128 SUPERFAMILY SSF51230 4 127 5.8E-43 T 12-10-2018 IPR011053 Single hybrid motif YPK_0868 e43667fc284c08e165691a2d2cefeed5 128 Pfam PF01597 Glycine cleavage H-protein 8 127 1.1E-45 T 12-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate YPK_0868 e43667fc284c08e165691a2d2cefeed5 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 127 2.8E-53 T 12-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 YPK_0868 e43667fc284c08e165691a2d2cefeed5 128 Gene3D G3DSA:2.40.50.100 2 128 6.6E-50 T 12-10-2018 YPK_0868 e43667fc284c08e165691a2d2cefeed5 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 39.155 T 12-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 YPK_2903 0c3ea767f739636cbc898825c501c49c 368 Pfam PF12698 ABC-2 family transporter protein 25 355 9.7E-50 T 12-10-2018 YPK_2903 0c3ea767f739636cbc898825c501c49c 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 253 277 1.4E-6 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YPK_2903 0c3ea767f739636cbc898825c501c49c 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 290 309 1.4E-6 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YPK_2903 0c3ea767f739636cbc898825c501c49c 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 310 329 1.4E-6 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YPK_4018 bdfddabf9493a5d903da4658436c649f 374 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 32 362 2.9E-144 T 12-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX YPK_2716 d705acf2ca46add11fdea2965b7ab96e 456 PIRSF PIRSF029692 2 456 2.0E-205 T 12-10-2018 IPR016935 Staphylopine dehydrogenase YPK_2716 d705acf2ca46add11fdea2965b7ab96e 456 SUPERFAMILY SSF51735 8 144 6.3E-5 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2716 d705acf2ca46add11fdea2965b7ab96e 456 Pfam PF10100 Staphylopine dehydrogenase 7 452 8.4E-181 T 12-10-2018 IPR016935 Staphylopine dehydrogenase YPK_2716 d705acf2ca46add11fdea2965b7ab96e 456 Gene3D G3DSA:3.40.50.720 4 198 5.2E-10 T 12-10-2018 YPK_0396 bd87f8b12b9ccd5d0cccd542b8931d8c 265 SUPERFAMILY SSF46689 203 261 7.62E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0396 bd87f8b12b9ccd5d0cccd542b8931d8c 265 Pfam PF02954 Bacterial regulatory protein, Fis family 221 261 2.5E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_0396 bd87f8b12b9ccd5d0cccd542b8931d8c 265 Gene3D G3DSA:1.10.10.60 208 265 6.2E-6 T 12-10-2018 YPK_0309 eed5df6fad418a9d43e3b4c061d41cae 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.048 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0309 eed5df6fad418a9d43e3b4c061d41cae 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 3.9E-51 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0309 eed5df6fad418a9d43e3b4c061d41cae 129 Pfam PF01196 Ribosomal protein L17 20 116 9.9E-35 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0309 eed5df6fad418a9d43e3b4c061d41cae 129 Gene3D G3DSA:3.90.1030.10 1 117 2.6E-48 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0309 eed5df6fad418a9d43e3b4c061d41cae 129 SUPERFAMILY SSF64263 1 118 3.92E-51 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0309 eed5df6fad418a9d43e3b4c061d41cae 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1781 7bbec0af1547f46428c9fd2d89e4a6bb 165 SUPERFAMILY SSF55781 2 151 1.32E-39 T 12-10-2018 YPK_1781 7bbec0af1547f46428c9fd2d89e4a6bb 165 Pfam PF13185 GAF domain 39 146 2.2E-9 T 12-10-2018 IPR003018 GAF domain GO:0005515 YPK_1781 7bbec0af1547f46428c9fd2d89e4a6bb 165 Gene3D G3DSA:3.30.450.40 1 165 4.1E-65 T 12-10-2018 IPR029016 GAF-like domain superfamily YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 SUPERFAMILY SSF101967 681 771 1.57E-18 T 12-10-2018 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Gene3D G3DSA:3.30.1300.30 765 876 1.1E-31 T 12-10-2018 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF03895 YadA-like membrane anchor domain 817 876 5.3E-17 T 12-10-2018 IPR005594 YadA-like, C-terminal YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Gene3D G3DSA:2.150.10.10 375 531 3.1E-45 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Gene3D G3DSA:2.150.10.10 238 372 9.7E-31 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Gene3D G3DSA:2.150.10.10 534 689 4.7E-32 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Gene3D G3DSA:2.150.10.10 46 182 2.1E-6 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 SUPERFAMILY SSF101967 109 181 5.49E-5 T 12-10-2018 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 SUPERFAMILY SSF54523 761 876 3.3E-25 T 12-10-2018 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 SUPERFAMILY SSF101967 196 340 1.7E-22 T 12-10-2018 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Gene3D G3DSA:2.60.40.4050 698 750 4.0E-16 T 12-10-2018 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 156 182 4.3E-5 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 639 676 1.2E-7 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 318 358 4.4E-8 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 477 517 3.1E-9 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 750 787 5.9E-7 T 12-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05658 Head domain of trimeric autotransporter adhesin 388 414 2.2E-6 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05658 Head domain of trimeric autotransporter adhesin 720 744 3.5E-4 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05658 Head domain of trimeric autotransporter adhesin 547 572 4.8E-5 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 Pfam PF05658 Head domain of trimeric autotransporter adhesin 575 601 4.6E-5 T 12-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 SUPERFAMILY SSF101967 361 499 1.28E-23 T 12-10-2018 YPK_1761 6a8b4fe7f0bae282834bf806fb403c39 876 SUPERFAMILY SSF101967 523 660 4.71E-18 T 12-10-2018 YPK_2419 180d1f937ea5ee83e20269900c319b25 229 Pfam PF02107 Flagellar L-ring protein 45 228 4.5E-59 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YPK_2419 180d1f937ea5ee83e20269900c319b25 229 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 227 27.546 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YPK_2419 180d1f937ea5ee83e20269900c319b25 229 PRINTS PR01008 Flagellar L-ring protein signature 190 204 3.1E-35 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YPK_2419 180d1f937ea5ee83e20269900c319b25 229 PRINTS PR01008 Flagellar L-ring protein signature 143 158 3.1E-35 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YPK_2419 180d1f937ea5ee83e20269900c319b25 229 PRINTS PR01008 Flagellar L-ring protein signature 169 185 3.1E-35 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YPK_2419 180d1f937ea5ee83e20269900c319b25 229 PRINTS PR01008 Flagellar L-ring protein signature 70 82 3.1E-35 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YPK_2419 180d1f937ea5ee83e20269900c319b25 229 PRINTS PR01008 Flagellar L-ring protein signature 206 220 3.1E-35 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 YPK_4008 8cf016f7358d53e53cf1c080e5419296 238 SUPERFAMILY SSF56784 10 238 6.59E-40 T 12-10-2018 IPR036412 HAD-like superfamily YPK_4008 8cf016f7358d53e53cf1c080e5419296 238 Pfam PF00702 haloacid dehalogenase-like hydrolase 10 196 5.2E-9 T 12-10-2018 YPK_4008 8cf016f7358d53e53cf1c080e5419296 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 119 201 5.9E-13 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_4008 8cf016f7358d53e53cf1c080e5419296 238 Gene3D G3DSA:1.20.120.1600 24 110 7.6E-61 T 12-10-2018 YPK_4008 8cf016f7358d53e53cf1c080e5419296 238 Gene3D G3DSA:3.40.50.1000 12 231 7.6E-61 T 12-10-2018 IPR023214 HAD superfamily YPK_0509 9e2c20bd46ee3d10fe826b7d9761d384 187 Gene3D G3DSA:3.40.50.1000 2 187 8.9E-59 T 12-10-2018 IPR023214 HAD superfamily YPK_0509 9e2c20bd46ee3d10fe826b7d9761d384 187 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 25 177 4.9E-69 T 12-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YPK_0509 9e2c20bd46ee3d10fe826b7d9761d384 187 SUPERFAMILY SSF56784 21 179 2.93E-41 T 12-10-2018 IPR036412 HAD-like superfamily YPK_0509 9e2c20bd46ee3d10fe826b7d9761d384 187 PIRSF PIRSF006118 12 187 1.2E-72 T 12-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YPK_0509 9e2c20bd46ee3d10fe826b7d9761d384 187 Pfam PF08282 haloacid dehalogenase-like hydrolase 94 157 3.4E-10 T 12-10-2018 YPK_2035 2b25ad630e90fa094f10b62eae337fe3 83 Pfam PF10692 Protein of unknown function (DUF2498) 5 81 2.6E-44 T 12-10-2018 IPR019633 Protein of unknown function DUF2498 YPK_2035 2b25ad630e90fa094f10b62eae337fe3 83 Gene3D G3DSA:1.10.1900.30 9 77 1.6E-38 T 12-10-2018 IPR038191 YciN superfamily YPK_2078 25a62466fd2363c763120f155e7765a1 338 Pfam PF00072 Response regulator receiver domain 10 120 4.3E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2078 25a62466fd2363c763120f155e7765a1 338 Gene3D G3DSA:3.60.40.10 137 321 5.9E-9 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 YPK_2078 25a62466fd2363c763120f155e7765a1 338 SMART SM00448 8 120 1.6E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2078 25a62466fd2363c763120f155e7765a1 338 Gene3D G3DSA:3.40.50.2300 2 130 2.7E-31 T 12-10-2018 YPK_2078 25a62466fd2363c763120f155e7765a1 338 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 56.135 T 12-10-2018 IPR028616 Regulator of RpoS YPK_2078 25a62466fd2363c763120f155e7765a1 338 SUPERFAMILY SSF52172 7 146 2.13E-32 T 12-10-2018 IPR011006 CheY-like superfamily YPK_0276 8fe87bc8d61e31dd523adc4cb6199cb6 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 3.6E-65 T 12-10-2018 IPR023798 Ribosomal protein S7 domain YPK_0276 8fe87bc8d61e31dd523adc4cb6199cb6 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.144 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 YPK_0276 8fe87bc8d61e31dd523adc4cb6199cb6 156 Gene3D G3DSA:1.10.455.10 2 155 5.6E-64 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily YPK_0276 8fe87bc8d61e31dd523adc4cb6199cb6 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 12-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0276 8fe87bc8d61e31dd523adc4cb6199cb6 156 SUPERFAMILY SSF47973 6 149 7.59E-60 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily YPK_0276 8fe87bc8d61e31dd523adc4cb6199cb6 156 PIRSF PIRSF002122 3 156 2.3E-63 T 12-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 YPK_0276 8fe87bc8d61e31dd523adc4cb6199cb6 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.4E-71 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 YPK_4149 0b370536d9fba80b68bb3dbf8c71ccaf 439 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 47 225 2.6E-66 T 12-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 YPK_4149 0b370536d9fba80b68bb3dbf8c71ccaf 439 Gene3D G3DSA:3.40.50.2000 231 417 5.4E-66 T 12-10-2018 YPK_4149 0b370536d9fba80b68bb3dbf8c71ccaf 439 SUPERFAMILY SSF53756 71 434 3.04E-16 T 12-10-2018 YPK_4149 0b370536d9fba80b68bb3dbf8c71ccaf 439 Gene3D G3DSA:3.40.50.11720 55 223 1.5E-47 T 12-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 YPK_4149 0b370536d9fba80b68bb3dbf8c71ccaf 439 Pfam PF00534 Glycosyl transferases group 1 303 412 5.4E-10 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 YPK_2541 5ba92aade0cec4021074498acc60d865 346 Pfam PF01032 FecCD transport family 23 334 3.5E-77 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_2541 5ba92aade0cec4021074498acc60d865 346 Gene3D G3DSA:1.10.3470.10 11 340 1.7E-82 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2541 5ba92aade0cec4021074498acc60d865 346 SUPERFAMILY SSF81345 6 331 1.15E-69 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2066 957f9b9ebfb489a97adc024be211b7b1 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 1.3E-29 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_2066 957f9b9ebfb489a97adc024be211b7b1 333 SMART SM00382 48 241 4.1E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2066 957f9b9ebfb489a97adc024be211b7b1 333 Gene3D G3DSA:3.40.50.300 8 332 4.3E-97 T 12-10-2018 YPK_2066 957f9b9ebfb489a97adc024be211b7b1 333 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2066 957f9b9ebfb489a97adc024be211b7b1 333 SUPERFAMILY SSF52540 22 263 5.45E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2066 957f9b9ebfb489a97adc024be211b7b1 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 310 6.1E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_2066 957f9b9ebfb489a97adc024be211b7b1 333 Pfam PF00005 ABC transporter 40 191 5.8E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_4073 1015475afbe39b1c82a1c234baa04183 630 Gene3D G3DSA:2.40.170.20 163 630 7.4E-156 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_4073 1015475afbe39b1c82a1c234baa04183 630 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 613 630 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site YPK_4073 1015475afbe39b1c82a1c234baa04183 630 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 157 3.3E-30 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_4073 1015475afbe39b1c82a1c234baa04183 630 SUPERFAMILY SSF56935 38 630 1.28E-122 T 12-10-2018 YPK_4073 1015475afbe39b1c82a1c234baa04183 630 Gene3D G3DSA:2.170.130.10 32 162 3.0E-39 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_4073 1015475afbe39b1c82a1c234baa04183 630 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 9 630 35.006 T 12-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 YPK_4073 1015475afbe39b1c82a1c234baa04183 630 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 9 630 5.0E-224 T 12-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 YPK_4073 1015475afbe39b1c82a1c234baa04183 630 Pfam PF00593 TonB dependent receptor 245 629 1.7E-44 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_2929 8583d053c2ecf760866842530af9080b 267 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 28 266 1.1E-65 T 12-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 YPK_2929 8583d053c2ecf760866842530af9080b 267 Pfam PF08241 Methyltransferase domain 63 154 2.2E-24 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 YPK_2929 8583d053c2ecf760866842530af9080b 267 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 20 266 29.257 T 12-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 YPK_2929 8583d053c2ecf760866842530af9080b 267 Gene3D G3DSA:3.40.50.150 27 215 1.0E-34 T 12-10-2018 YPK_2929 8583d053c2ecf760866842530af9080b 267 SUPERFAMILY SSF53335 26 261 7.83E-38 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0459 580282019844b19ef38fada7f863390a 154 SUPERFAMILY SSF51230 79 154 8.77E-27 T 12-10-2018 IPR011053 Single hybrid motif YPK_0459 580282019844b19ef38fada7f863390a 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 83 96 1.4E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 YPK_0459 580282019844b19ef38fada7f863390a 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 100 114 1.4E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 YPK_0459 580282019844b19ef38fada7f863390a 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 115 128 1.4E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 YPK_0459 580282019844b19ef38fada7f863390a 154 Pfam PF00364 Biotin-requiring enzyme 82 153 6.9E-25 T 12-10-2018 IPR000089 Biotin/lipoyl attachment YPK_0459 580282019844b19ef38fada7f863390a 154 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 154 4.4E-65 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 YPK_0459 580282019844b19ef38fada7f863390a 154 Gene3D G3DSA:2.40.50.100 75 154 1.4E-31 T 12-10-2018 YPK_0459 580282019844b19ef38fada7f863390a 154 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 110 127 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 SUPERFAMILY SSF47413 3 60 5.35E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 12-10-2018 YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 Pfam PF13377 Periplasmic binding protein-like domain 167 327 7.2E-35 T 12-10-2018 YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 Gene3D G3DSA:3.40.50.2300 159 288 8.0E-73 T 12-10-2018 YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 SUPERFAMILY SSF53822 63 327 1.85E-71 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 Gene3D G3DSA:3.40.50.2300 62 307 8.0E-73 T 12-10-2018 YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 Gene3D G3DSA:1.10.260.40 2 60 4.4E-21 T 12-10-2018 YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.2E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_0588 3f509d6b5cbc2535e6e96743aa822b72 328 SMART SM00354 2 72 1.0E-23 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 SUPERFAMILY SSF53901 3 252 8.51E-78 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 SMART SM00825 Beta-ketoacyl synthase 6 413 4.3E-14 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 1.3E-39 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 2.8E-62 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 SUPERFAMILY SSF53901 215 412 1.54E-73 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 Gene3D G3DSA:3.40.47.10 1 255 2.3E-89 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 PIRSF PIRSF000447 1 413 4.2E-203 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 1.0E-197 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 YPK_1688 901a7ed3a676152af2cf18812316ea5b 413 Gene3D G3DSA:3.40.47.10 261 413 6.0E-58 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_1454 55f213166c8e62dd89903d6c95a25692 258 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 251 3.8E-27 T 12-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 YPK_1348 12463c5ae6a129622dad541a66eb276a 397 Pfam PF03692 Putative zinc- or iron-chelating domain 17 125 2.2E-7 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein YPK_1348 12463c5ae6a129622dad541a66eb276a 397 ProDom PD035357 TRANSFERASE 2.1.1.- LYSINE METHYLTRANSFERASE N-METHYLTRANSFERASE FLAGELLUM LYSINE-N-METHYLASE BIOSYNTHETIC FLAGELLIN N-METHYLATION 230 393 1.0E-94 T 12-10-2018 IPR020193 Flagellin lysine-N-methylase, C-terminal YPK_3389 a83369c2e503f24b5fa07b115df996a1 127 PIRSF PIRSF000029 1 127 4.3E-61 T 12-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 YPK_3389 a83369c2e503f24b5fa07b115df996a1 127 SUPERFAMILY SSF47175 22 127 1.44E-35 T 12-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 YPK_3389 a83369c2e503f24b5fa07b115df996a1 127 Gene3D G3DSA:1.20.120.10 17 127 1.3E-42 T 12-10-2018 YPK_3389 a83369c2e503f24b5fa07b115df996a1 127 Pfam PF07361 Cytochrome b562 23 127 1.4E-27 T 12-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 YPK_2305 5dc4b34daad7132a2f06ed1a2a7f741d 364 SUPERFAMILY SSF69279 11 184 1.13E-26 T 12-10-2018 YPK_2305 5dc4b34daad7132a2f06ed1a2a7f741d 364 Pfam PF05954 Phage late control gene D protein (GPD) 87 346 1.8E-30 T 12-10-2018 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 256 266 - T 12-10-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 478 504 4.3E-38 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 56 69 4.3E-38 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 30 52 4.3E-38 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 71 96 4.3E-38 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 264 287 4.3E-38 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 17 735 0.0 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 Hamap MF_01961 Catalase-peroxidase [katG]. 13 735 40.201 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 Gene3D G3DSA:1.10.420.20 194 395 6.0E-201 T 12-10-2018 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 SUPERFAMILY SSF48113 428 734 2.95E-107 T 12-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00458 Haem peroxidase superfamily signature 94 108 7.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00458 Haem peroxidase superfamily signature 256 271 7.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00458 Haem peroxidase superfamily signature 640 655 7.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00458 Haem peroxidase superfamily signature 154 171 7.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 PRINTS PR00458 Haem peroxidase superfamily signature 172 184 7.1E-17 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 Gene3D G3DSA:1.10.520.10 431 734 1.7E-138 T 12-10-2018 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 Gene3D G3DSA:1.10.420.10 586 710 1.7E-138 T 12-10-2018 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 Gene3D G3DSA:1.10.520.10 28 428 6.0E-201 T 12-10-2018 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 ProSitePatterns PS00436 Peroxidases active site signature. 94 105 - T 12-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 SUPERFAMILY SSF48113 31 428 2.8E-141 T 12-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 Pfam PF00141 Peroxidase 81 393 2.5E-50 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_3388 7abeab208ddc30a4b26791745b3f7243 737 Pfam PF00141 Peroxidase 401 709 1.8E-36 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 YPK_1299 200b2ed97dce5211bf9406e5ed1d474d 74 Pfam PF07191 zinc-ribbons 4 68 1.1E-28 T 12-10-2018 IPR010807 Protein of unknown function DUF1407 YPK_1299 200b2ed97dce5211bf9406e5ed1d474d 74 SUPERFAMILY SSF161187 2 70 2.88E-27 T 12-10-2018 YPK_1299 200b2ed97dce5211bf9406e5ed1d474d 74 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 5 68 4.0E-32 T 12-10-2018 IPR010807 Protein of unknown function DUF1407 YPK_1299 200b2ed97dce5211bf9406e5ed1d474d 74 Gene3D G3DSA:2.10.290.10 1 71 2.2E-27 T 12-10-2018 IPR029037 YfgJ-like YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 2.5E-185 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 Gene3D G3DSA:3.40.1380.20 336 467 2.7E-44 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 Gene3D G3DSA:2.40.33.10 71 167 1.4E-145 T 12-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 Gene3D G3DSA:3.20.20.60 4 332 1.4E-145 T 12-10-2018 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 SUPERFAMILY SSF51621 1 338 3.0E-100 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 SUPERFAMILY SSF50800 70 167 3.14E-29 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 SUPERFAMILY SSF52935 323 469 9.68E-34 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 7.2E-78 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 7.2E-78 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 7.2E-78 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 7.2E-78 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 7.2E-78 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 7.2E-78 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 7.2E-78 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 12-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 2.9E-152 T 12-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_1855 132dbb1082d8bf76375d258694d78fa7 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 2.2E-27 T 12-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 Gene3D G3DSA:1.10.10.10 25 98 1.6E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 SMART SM00345 32 95 2.9E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 Gene3D G3DSA:3.40.1410.10 99 260 1.9E-45 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 69 85 4.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 69 4.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 SMART SM00866 115 251 7.9E-38 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 SUPERFAMILY SSF64288 102 256 1.52E-42 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 Pfam PF07702 UTRA domain 115 251 2.1E-38 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 SUPERFAMILY SSF46785 28 98 3.42E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2284 a2d60c45eb8361b23d609e3fe6a42adb 265 Pfam PF00392 Bacterial regulatory proteins, gntR family 32 93 2.1E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1077 993945f867693e838b335f638b59232a 176 Gene3D G3DSA:3.10.129.10 5 148 3.7E-68 T 12-10-2018 YPK_1077 993945f867693e838b335f638b59232a 176 SUPERFAMILY SSF54637 10 151 1.1E-50 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_1077 993945f867693e838b335f638b59232a 176 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 37.239 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_1077 993945f867693e838b335f638b59232a 176 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 4.7E-60 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_1077 993945f867693e838b335f638b59232a 176 Pfam PF07977 FabA-like domain 17 141 2.1E-40 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_1462 a9ab4c75019f7f550337c8554b0f17fb 528 Gene3D G3DSA:1.10.3720.10 27 264 1.0E-41 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1462 a9ab4c75019f7f550337c8554b0f17fb 528 Gene3D G3DSA:1.10.3720.10 281 525 3.1E-30 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1462 a9ab4c75019f7f550337c8554b0f17fb 528 SUPERFAMILY SSF161098 286 519 1.68E-35 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1462 a9ab4c75019f7f550337c8554b0f17fb 528 SUPERFAMILY SSF161098 29 254 1.31E-36 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1462 a9ab4c75019f7f550337c8554b0f17fb 528 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 345 524 1.2E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 Gene3D G3DSA:3.30.479.30 46 178 4.4E-42 T 12-10-2018 YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 12-10-2018 IPR018080 Band 7/stomatin-like, conserved site YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 128 151 2.0E-27 T 12-10-2018 IPR001972 Stomatin family GO:0016020 YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 171 192 2.0E-27 T 12-10-2018 IPR001972 Stomatin family GO:0016020 YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 108 125 2.0E-27 T 12-10-2018 IPR001972 Stomatin family GO:0016020 YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 152 170 2.0E-27 T 12-10-2018 IPR001972 Stomatin family GO:0016020 YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 PRINTS PR00721 Stomatin signature 73 94 2.0E-27 T 12-10-2018 IPR001972 Stomatin family GO:0016020 YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 SMART SM00244 18 176 8.0E-59 T 12-10-2018 IPR001107 Band 7 domain YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 SUPERFAMILY SSF117892 49 183 1.11E-40 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily YPK_3162 c742e17a8d0fdf4bde1691e6c777e3ca 304 Pfam PF01145 SPFH domain / Band 7 family 22 200 2.5E-31 T 12-10-2018 IPR001107 Band 7 domain YPK_3310 1773cd52b1519fa9f929afc8a250b807 248 Gene3D G3DSA:1.10.10.2690 128 234 1.1E-22 T 12-10-2018 YPK_3310 1773cd52b1519fa9f929afc8a250b807 248 Pfam PF03333 Adhesin biosynthesis transcription regulatory protein 147 223 1.8E-12 T 12-10-2018 IPR004356 Adhesin operon regulatory protein GO:0006355 YPK_1868 e8758cdc11aa30c1027c663ac69ae048 226 Pfam PF00929 Exonuclease 31 205 3.7E-37 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_1868 e8758cdc11aa30c1027c663ac69ae048 226 Gene3D G3DSA:3.30.420.10 20 226 5.5E-58 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_1868 e8758cdc11aa30c1027c663ac69ae048 226 SMART SM00479 29 214 8.1E-41 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_1868 e8758cdc11aa30c1027c663ac69ae048 226 Hamap MF_00157 Ribonuclease T [rnt]. 1 226 118.163 T 12-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 YPK_1868 e8758cdc11aa30c1027c663ac69ae048 226 TIGRFAM TIGR01298 RNaseT: ribonuclease T 21 219 1.7E-105 T 12-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 YPK_1868 e8758cdc11aa30c1027c663ac69ae048 226 SUPERFAMILY SSF53098 20 218 1.11E-57 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 Gene3D G3DSA:3.40.1690.10 217 359 6.6E-59 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 2.1E-41 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 2.1E-41 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 2.1E-41 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 2.1E-41 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 2.1E-41 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 1.6E-124 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 353 9.2E-134 T 12-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 YPK_2432 bd632b8200acda4c757ba09fe1fdd0d7 386 SUPERFAMILY SSF160544 244 351 1.11E-40 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal YPK_4200 8e577314f6a4b544650cf0030977bed2 176 Gene3D G3DSA:2.20.25.120 52 84 3.2E-58 T 12-10-2018 YPK_4200 8e577314f6a4b544650cf0030977bed2 176 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 9 142 6.2E-47 T 12-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 YPK_4200 8e577314f6a4b544650cf0030977bed2 176 Gene3D G3DSA:3.40.50.300 9 164 3.2E-58 T 12-10-2018 YPK_4200 8e577314f6a4b544650cf0030977bed2 176 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 9 167 3.1E-43 T 12-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 YPK_4200 8e577314f6a4b544650cf0030977bed2 176 SUPERFAMILY SSF52540 6 168 1.17E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1615 3cdc5df1bcb590a6ca9824ee653ccc8f 313 SUPERFAMILY SSF46785 8 114 8.62E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1615 3cdc5df1bcb590a6ca9824ee653ccc8f 313 Gene3D G3DSA:3.40.190.10 166 266 4.0E-56 T 12-10-2018 YPK_1615 3cdc5df1bcb590a6ca9824ee653ccc8f 313 Pfam PF03466 LysR substrate binding domain 90 294 2.8E-34 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_1615 3cdc5df1bcb590a6ca9824ee653ccc8f 313 Gene3D G3DSA:3.40.190.10 95 291 4.0E-56 T 12-10-2018 YPK_1615 3cdc5df1bcb590a6ca9824ee653ccc8f 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 6.1E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1615 3cdc5df1bcb590a6ca9824ee653ccc8f 313 SUPERFAMILY SSF53850 91 298 1.79E-38 T 12-10-2018 YPK_1615 3cdc5df1bcb590a6ca9824ee653ccc8f 313 Gene3D G3DSA:1.10.10.10 6 94 1.8E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 2.4E-46 T 12-10-2018 IPR032090 Peptide chain release factor 3, C-terminal YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 6.6E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 6.6E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 SUPERFAMILY SSF52540 10 277 1.86E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 6.1E-13 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 162 1.2E-18 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 Gene3D G3DSA:3.40.50.300 72 379 1.4E-118 T 12-10-2018 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 Gene3D G3DSA:3.40.50.300 110 275 1.4E-118 T 12-10-2018 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.227 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 SUPERFAMILY SSF50447 262 393 9.94E-30 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 SUPERFAMILY SSF54980 393 468 4.32E-17 T 12-10-2018 IPR035647 EF-G domain III/V-like YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 6 529 0.0 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 Gene3D G3DSA:3.30.70.3280 390 529 8.7E-52 T 12-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily YPK_3633 5dd84a083c206215019f92dc7b7406cb 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 1.3E-45 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 YPK_1503 e6d44375424040ce4b8c86779e28b5bc 170 Pfam PF03918 Cytochrome C biogenesis protein 7 145 2.7E-56 T 12-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family YPK_1503 e6d44375424040ce4b8c86779e28b5bc 170 Gene3D G3DSA:1.10.8.640 18 103 8.2E-38 T 12-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily YPK_1412 c91f371fa5748dc8a407f411dc4608ae 292 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 30 48 - T 12-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 YPK_1412 c91f371fa5748dc8a407f411dc4608ae 292 TIGRFAM TIGR01138 cysM: cysteine synthase B 3 292 2.0E-149 T 12-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 YPK_1412 c91f371fa5748dc8a407f411dc4608ae 292 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 6 281 1.5E-64 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_1412 c91f371fa5748dc8a407f411dc4608ae 292 Gene3D G3DSA:3.40.50.1100 8 288 1.8E-112 T 12-10-2018 YPK_1412 c91f371fa5748dc8a407f411dc4608ae 292 Gene3D G3DSA:3.40.50.1100 35 140 1.8E-112 T 12-10-2018 YPK_1412 c91f371fa5748dc8a407f411dc4608ae 292 TIGRFAM TIGR01136 cysKM: cysteine synthase 5 292 2.5E-122 T 12-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 YPK_1412 c91f371fa5748dc8a407f411dc4608ae 292 SUPERFAMILY SSF53686 4 289 1.05E-91 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_0177 ba38b511ab295d7ae61665c277592317 226 SUPERFAMILY SSF56784 6 217 4.96E-43 T 12-10-2018 IPR036412 HAD-like superfamily YPK_0177 ba38b511ab295d7ae61665c277592317 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 2.3E-11 T 12-10-2018 YPK_0177 ba38b511ab295d7ae61665c277592317 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 2.7E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0177 ba38b511ab295d7ae61665c277592317 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 2.7E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0177 ba38b511ab295d7ae61665c277592317 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 2.7E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0177 ba38b511ab295d7ae61665c277592317 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 2.7E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_0177 ba38b511ab295d7ae61665c277592317 226 Gene3D G3DSA:3.40.50.1000 9 202 9.5E-25 T 12-10-2018 IPR023214 HAD superfamily YPK_0177 ba38b511ab295d7ae61665c277592317 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 191 6.1E-15 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 YPK_1796 fc8fe09d46023afbbc71d832b2fedfbd 182 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 163 1.0E-35 T 12-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPK_1796 fc8fe09d46023afbbc71d832b2fedfbd 182 PIRSF PIRSF030780 1 182 2.2E-106 T 12-10-2018 IPR016956 Inner membrane protein YdjM YPK_1695 a14b275df4ef49dca64394f4047a5b54 272 Gene3D G3DSA:3.40.50.10860 4 103 1.8E-31 T 12-10-2018 YPK_1695 a14b275df4ef49dca64394f4047a5b54 272 SUPERFAMILY SSF51735 106 266 2.01E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1695 a14b275df4ef49dca64394f4047a5b54 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 26 93 4.2E-16 T 12-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 YPK_1695 a14b275df4ef49dca64394f4047a5b54 272 Gene3D G3DSA:3.40.50.720 104 272 5.8E-36 T 12-10-2018 YPK_1695 a14b275df4ef49dca64394f4047a5b54 272 SUPERFAMILY SSF53223 7 105 1.32E-26 T 12-10-2018 YPK_3540 4e94ff49586594fe9cf9c5c25e2ad1c0 553 Gene3D G3DSA:3.40.190.10 113 314 8.0E-31 T 12-10-2018 YPK_3540 4e94ff49586594fe9cf9c5c25e2ad1c0 553 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 307 1.6E-17 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_3540 4e94ff49586594fe9cf9c5c25e2ad1c0 553 SUPERFAMILY SSF53850 117 550 1.63E-65 T 12-10-2018 YPK_3540 4e94ff49586594fe9cf9c5c25e2ad1c0 553 SUPERFAMILY SSF46785 4 56 4.71E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3540 4e94ff49586594fe9cf9c5c25e2ad1c0 553 Hamap MF_01449 HTH-type transcriptional regulator SgrR [sgrR]. 1 553 69.366 T 12-10-2018 IPR023767 Transcriptional regulator SgrR YPK_3540 4e94ff49586594fe9cf9c5c25e2ad1c0 553 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 4.6E-42 T 12-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPK_2912 bf504a0b4ab24dccab3d7f074a90bcf1 293 SUPERFAMILY SSF103481 188 290 5.62E-5 T 12-10-2018 YPK_2912 bf504a0b4ab24dccab3d7f074a90bcf1 293 Pfam PF00892 EamA-like transporter family 156 288 5.2E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_2912 bf504a0b4ab24dccab3d7f074a90bcf1 293 Pfam PF00892 EamA-like transporter family 10 140 1.3E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_2912 bf504a0b4ab24dccab3d7f074a90bcf1 293 SUPERFAMILY SSF103481 41 142 8.5E-11 T 12-10-2018 YPK_0118 7cb362692ddfc5cdfe425cbbf3d19d0a 444 Gene3D G3DSA:3.40.390.10 39 228 2.3E-137 T 12-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 YPK_0118 7cb362692ddfc5cdfe425cbbf3d19d0a 444 SUPERFAMILY SSF55486 30 222 4.5E-52 T 12-10-2018 YPK_0118 7cb362692ddfc5cdfe425cbbf3d19d0a 444 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 357 379 0.0015 T 12-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass YPK_0118 7cb362692ddfc5cdfe425cbbf3d19d0a 444 SUPERFAMILY SSF51120 226 436 1.16E-34 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0118 7cb362692ddfc5cdfe425cbbf3d19d0a 444 Pfam PF08548 Peptidase M10 serralysin C terminal 224 437 6.5E-86 T 12-10-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 YPK_0118 7cb362692ddfc5cdfe425cbbf3d19d0a 444 Gene3D G3DSA:2.150.10.10 229 428 2.3E-137 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal YPK_0118 7cb362692ddfc5cdfe425cbbf3d19d0a 444 PIRSF PIRSF001205 5 438 2.7E-123 T 12-10-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 YPK_0118 7cb362692ddfc5cdfe425cbbf3d19d0a 444 SMART SM00235 45 224 9.2E-17 T 12-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 YPK_2175 4ae31d38718d86c248e587c26d7807e8 284 Pfam PF00793 DAHP synthetase I family 10 275 7.8E-68 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YPK_2175 4ae31d38718d86c248e587c26d7807e8 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 2.4E-118 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YPK_2175 4ae31d38718d86c248e587c26d7807e8 284 Gene3D G3DSA:3.20.20.70 1 284 1.7E-98 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2175 4ae31d38718d86c248e587c26d7807e8 284 SUPERFAMILY SSF51569 3 279 6.32E-103 T 12-10-2018 YPK_2175 4ae31d38718d86c248e587c26d7807e8 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.167 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YPK_3877 9f2622b870dec9254c7049fb5791784f 197 Pfam PF02342 TerD domain 2 185 5.1E-47 T 12-10-2018 IPR003325 TerD domain YPK_3877 9f2622b870dec9254c7049fb5791784f 197 Gene3D G3DSA:2.60.60.30 18 185 1.7E-48 T 12-10-2018 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 Pfam PF01966 HD domain 229 310 3.2E-13 T 12-10-2018 IPR006674 HD domain YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 Gene3D G3DSA:3.30.460.10 1 121 9.0E-27 T 12-10-2018 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 SUPERFAMILY SSF81301 1 119 1.09E-29 T 12-10-2018 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 SMART SM00471 224 359 5.6E-4 T 12-10-2018 IPR003607 HD/PDEase domain YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 SUPERFAMILY SSF81891 120 409 4.84E-58 T 12-10-2018 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 211 6.7E-16 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 46.604 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 Gene3D G3DSA:1.10.3090.10 122 409 1.9E-45 T 12-10-2018 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.042 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 PIRSF PIRSF000813 1 408 1.8E-200 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 YPK_0641 35c1d9b0e146d2f09661aca222d01f4a 412 Pfam PF01743 Poly A polymerase head domain 3 122 7.1E-17 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 Gene3D G3DSA:1.20.120.530 102 229 4.4E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 SUPERFAMILY SSF48008 107 223 6.28E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 SMART SM00345 18 77 9.3E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 4.1E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 SMART SM00895 106 227 5.0E-17 T 12-10-2018 IPR011711 GntR, C-terminal YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 Gene3D G3DSA:1.10.10.10 1 79 3.9E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 1.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 1.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 Pfam PF07729 FCD domain 110 222 1.0E-21 T 12-10-2018 IPR011711 GntR, C-terminal YPK_4206 477c35b97dc77d15cc30cfd369500f69 229 SUPERFAMILY SSF46785 10 81 1.25E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1016 abf4ecc766d8fce2a9b7bd0078d682e4 250 SUPERFAMILY SSF46894 2 95 2.3E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1016 abf4ecc766d8fce2a9b7bd0078d682e4 250 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 95 5.6E-17 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_1016 abf4ecc766d8fce2a9b7bd0078d682e4 250 Gene3D G3DSA:1.10.10.10 1 104 1.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1016 abf4ecc766d8fce2a9b7bd0078d682e4 250 SMART SM00862 22 95 2.9E-15 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_2936 58ee3916fa5a67972363b3f011f7593f 231 SUPERFAMILY SSF161098 5 219 5.76E-52 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2936 58ee3916fa5a67972363b3f011f7593f 231 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 220 5.8E-75 T 12-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 YPK_2936 58ee3916fa5a67972363b3f011f7593f 231 Gene3D G3DSA:1.10.3720.10 2 225 2.0E-64 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2936 58ee3916fa5a67972363b3f011f7593f 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 227 3.6E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0925 2238d40757e53a436a0db9bc9a7f7d55 404 Gene3D G3DSA:3.30.160.390 1 88 1.0E-31 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YPK_0925 2238d40757e53a436a0db9bc9a7f7d55 404 Pfam PF13356 Arm DNA-binding domain 3 88 1.6E-17 T 12-10-2018 IPR025166 Integrase, DNA-binding domain YPK_0925 2238d40757e53a436a0db9bc9a7f7d55 404 Gene3D G3DSA:1.10.443.10 207 385 7.5E-22 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_0925 2238d40757e53a436a0db9bc9a7f7d55 404 Gene3D G3DSA:1.10.150.130 90 206 4.6E-32 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_0925 2238d40757e53a436a0db9bc9a7f7d55 404 SUPERFAMILY SSF56349 98 380 2.24E-66 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_0925 2238d40757e53a436a0db9bc9a7f7d55 404 Pfam PF00589 Phage integrase family 207 370 5.0E-24 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_1562 c3532d062db63b5e948232b458a28569 598 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 48 175 2.3E-45 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 24 184 25.19 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 328 598 2.8E-105 T 12-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 210 598 41.874 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 214 598 9.7E-176 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 Gene3D G3DSA:3.30.460.80 6 156 1.3E-35 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 251 262 - T 12-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 49 176 3.8E-42 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 Gene3D G3DSA:1.10.645.20 213 598 6.2E-143 T 12-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 15 598 72.302 T 12-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 YPK_1562 c3532d062db63b5e948232b458a28569 598 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 104 159 1.0E-26 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 SUPERFAMILY SSF143243 24 228 1.57E-60 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1562 c3532d062db63b5e948232b458a28569 598 SUPERFAMILY SSF56762 224 598 2.49E-121 T 12-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 Pfam PF00924 Mechanosensitive ion channel 883 1081 1.1E-51 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 Gene3D G3DSA:2.30.30.60 941 990 1.1E-10 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 SUPERFAMILY SSF82689 993 1088 3.79E-14 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 SUPERFAMILY SSF50182 926 991 9.81E-17 T 12-10-2018 IPR010920 LSM domain superfamily YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 Gene3D G3DSA:3.30.70.100 994 1086 8.2E-8 T 12-10-2018 YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 Pfam PF12795 Mechanosensitive ion channel porin domain 36 264 7.7E-62 T 12-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 955 989 - T 12-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 SUPERFAMILY SSF82861 841 924 4.84E-8 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 YPK_3811 60d51d7ed1fcbc9d6b28661b2e2d1c42 1113 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 486 822 2.3E-116 T 12-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 YPK_3183 f1e5c710dc7902b7dad4a8754e4aa769 373 Gene3D G3DSA:3.90.25.10 193 351 1.4E-169 T 12-10-2018 YPK_3183 f1e5c710dc7902b7dad4a8754e4aa769 373 Gene3D G3DSA:3.40.50.720 5 337 1.4E-169 T 12-10-2018 YPK_3183 f1e5c710dc7902b7dad4a8754e4aa769 373 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 346 1.5E-161 T 12-10-2018 IPR016040 NAD(P)-binding domain YPK_3183 f1e5c710dc7902b7dad4a8754e4aa769 373 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 356 56.607 T 12-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 YPK_3183 f1e5c710dc7902b7dad4a8754e4aa769 373 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 353 2.2E-180 T 12-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 YPK_3183 f1e5c710dc7902b7dad4a8754e4aa769 373 SUPERFAMILY SSF51735 3 352 1.57E-90 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 Pfam PF01343 Peptidase family S49 390 541 1.5E-47 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 Pfam PF01343 Peptidase family S49 139 287 3.7E-35 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 607 2.4E-222 T 12-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 Gene3D G3DSA:3.90.226.10 317 539 4.3E-163 T 12-10-2018 YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 Gene3D G3DSA:3.90.226.10 95 316 4.3E-163 T 12-10-2018 YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 SUPERFAMILY SSF52096 34 284 2.36E-26 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 326 539 9.5E-51 T 12-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 PIRSF PIRSF001217 8 616 1.2E-213 T 12-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 SUPERFAMILY SSF52096 316 528 1.33E-40 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_2091 7ebb0ffd226135ff520c5dd91d5be1a3 616 Gene3D G3DSA:3.40.1750.10 187 496 4.3E-163 T 12-10-2018 YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 Pfam PF00691 OmpA family 64 159 4.6E-18 T 12-10-2018 IPR006665 OmpA-like domain YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01021 OMPA domain signature 95 110 3.8E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01021 OMPA domain signature 65 87 3.8E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01021 OMPA domain signature 110 126 3.8E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 148 168 7.6E-8 T 12-10-2018 YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 110 127 7.6E-8 T 12-10-2018 YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 128 147 7.6E-8 T 12-10-2018 YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 Gene3D G3DSA:3.30.1330.60 31 168 4.4E-42 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_3617 dbd3e98fda5f49fe2712b65fc25fc1ba 168 SUPERFAMILY SSF103088 51 165 2.09E-32 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_0627 562bbc8402896006629986976e42da13 116 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 46 112 1.5E-13 T 12-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_2875 7fda970a3f16b50c99aa728db371ecaf 293 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 31 282 3.1E-77 T 12-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 YPK_2875 7fda970a3f16b50c99aa728db371ecaf 293 Gene3D G3DSA:1.10.3720.10 80 282 3.4E-23 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2875 7fda970a3f16b50c99aa728db371ecaf 293 SUPERFAMILY SSF161098 84 274 6.87E-27 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3677 b77e344472656a6feb9b421dcf1452d6 358 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 356 2.8E-74 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 YPK_3677 b77e344472656a6feb9b421dcf1452d6 358 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 356 5.0E-139 T 12-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 YPK_1872 43004045a45df006aa70e426bd3b8adc 199 Gene3D G3DSA:1.10.357.10 2 199 2.7E-58 T 12-10-2018 YPK_1872 43004045a45df006aa70e426bd3b8adc 199 SUPERFAMILY SSF46689 2 77 6.67E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1872 43004045a45df006aa70e426bd3b8adc 199 Pfam PF16925 Bacterial transcriptional repressor C-terminal 88 186 6.4E-10 T 12-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal YPK_1872 43004045a45df006aa70e426bd3b8adc 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 56 3.1E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_1872 43004045a45df006aa70e426bd3b8adc 199 SUPERFAMILY SSF48498 85 196 3.86E-22 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPK_4185 4d98f618e344e6e2f6fed8265cd6dc3e 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 8.0E-53 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 YPK_4185 4d98f618e344e6e2f6fed8265cd6dc3e 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 4.6E-68 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 YPK_4185 4d98f618e344e6e2f6fed8265cd6dc3e 145 Gene3D G3DSA:3.50.80.10 1 145 6.1E-56 T 12-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YPK_4185 4d98f618e344e6e2f6fed8265cd6dc3e 145 SUPERFAMILY SSF69500 1 144 6.54E-56 T 12-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily YPK_4185 4d98f618e344e6e2f6fed8265cd6dc3e 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.707 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 YPK_1772 339ab7f553a4826657b466af455367a3 79 Pfam PF07351 Protein of unknown function (DUF1480) 1 78 5.3E-43 T 12-10-2018 IPR009950 Protein of unknown function DUF1480 YPK_1772 339ab7f553a4826657b466af455367a3 79 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 3 78 1.0E-38 T 12-10-2018 IPR009950 Protein of unknown function DUF1480 YPK_0053 a939b5440314fee5d81965759ca6c66e 255 PRINTS PR00969 Pili chaperone signature 36 45 2.8E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0053 a939b5440314fee5d81965759ca6c66e 255 PRINTS PR00969 Pili chaperone signature 171 186 2.8E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0053 a939b5440314fee5d81965759ca6c66e 255 PRINTS PR00969 Pili chaperone signature 112 129 2.8E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0053 a939b5440314fee5d81965759ca6c66e 255 PRINTS PR00969 Pili chaperone signature 135 150 2.8E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0053 a939b5440314fee5d81965759ca6c66e 255 PRINTS PR00969 Pili chaperone signature 82 103 2.8E-33 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_0053 a939b5440314fee5d81965759ca6c66e 255 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 235 2.8E-14 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_0053 a939b5440314fee5d81965759ca6c66e 255 Gene3D G3DSA:2.60.40.10 156 247 1.3E-20 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0053 a939b5440314fee5d81965759ca6c66e 255 SUPERFAMILY SSF49584 160 247 1.1E-20 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_0053 a939b5440314fee5d81965759ca6c66e 255 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 111 128 - T 12-10-2018 IPR018046 Pili assembly chaperone, conserved site YPK_0053 a939b5440314fee5d81965759ca6c66e 255 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 36 153 6.3E-39 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_0053 a939b5440314fee5d81965759ca6c66e 255 Gene3D G3DSA:2.60.40.10 35 154 6.4E-41 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0053 a939b5440314fee5d81965759ca6c66e 255 SUPERFAMILY SSF49354 36 153 3.4E-38 T 12-10-2018 IPR008962 PapD-like superfamily YPK_4173 c30946098d865dbf8f78bc6afe7d715e 663 Gene3D G3DSA:3.30.565.60 280 409 1.8E-12 T 12-10-2018 IPR038475 RecG, C-terminal domain superfamily YPK_4173 c30946098d865dbf8f78bc6afe7d715e 663 Gene3D G3DSA:3.30.950.30 4 152 7.9E-28 T 12-10-2018 IPR038461 Schlafen, AAA domain superfamily YPK_4173 c30946098d865dbf8f78bc6afe7d715e 663 Pfam PF04326 Putative DNA-binding domain 15 144 5.7E-10 T 12-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 YPK_1140 5be28caa161761065a1cea834acc2c12 109 ProDom PD070929 HDEB PRECURSOR SIGNAL EXPORTED PERIPLASMIC SECRETED ECS4389 10K-L SEQUENCING DIRECT 34 102 2.0E-35 T 12-10-2018 YPK_1140 5be28caa161761065a1cea834acc2c12 109 Gene3D G3DSA:1.10.890.10 28 104 3.2E-35 T 12-10-2018 IPR038303 HNS-dependent expression A/B superfamily YPK_1140 5be28caa161761065a1cea834acc2c12 109 Hamap MF_00947 Acid stress chaperone HdeB [hdeB]. 1 101 28.616 T 12-10-2018 IPR028623 HNS-dependent expression B GO:0009268|GO:0051082 YPK_1140 5be28caa161761065a1cea834acc2c12 109 SUPERFAMILY SSF47752 33 94 3.14E-5 T 12-10-2018 IPR036831 HNS-dependent expression A superfamily GO:0030288|GO:0071468 YPK_1140 5be28caa161761065a1cea834acc2c12 109 Pfam PF06411 HdeA/HdeB family 9 94 9.6E-24 T 12-10-2018 IPR010486 HNS-dependent expression A/B YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 Pfam PF00318 Ribosomal protein S2 9 224 3.1E-94 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 Gene3D G3DSA:1.10.287.610 103 150 2.3E-93 T 12-10-2018 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 12-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 4.8E-108 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.2E-37 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.2E-37 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.2E-37 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.2E-37 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.2E-37 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.2E-37 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.585 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 SUPERFAMILY SSF52313 6 236 7.85E-97 T 12-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 12-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 YPK_1066 2b0c889592ff59239bc3e65502a737b1 241 Gene3D G3DSA:3.40.50.10490 8 219 2.3E-93 T 12-10-2018 YPK_3526 e3c80e7bfe426df4c6f63d87d75c58e1 320 PIRSF PIRSF004486 8 319 1.8E-100 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 YPK_3526 e3c80e7bfe426df4c6f63d87d75c58e1 320 SUPERFAMILY SSF53335 14 318 1.14E-46 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3526 e3c80e7bfe426df4c6f63d87d75c58e1 320 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 14 318 38.391 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 YPK_3526 e3c80e7bfe426df4c6f63d87d75c58e1 320 SUPERFAMILY SSF81799 121 220 2.49E-34 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 YPK_3526 e3c80e7bfe426df4c6f63d87d75c58e1 320 Gene3D G3DSA:3.40.50.150 17 317 6.4E-107 T 12-10-2018 YPK_3526 e3c80e7bfe426df4c6f63d87d75c58e1 320 Gene3D G3DSA:1.10.150.170 119 221 6.4E-107 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 YPK_3526 e3c80e7bfe426df4c6f63d87d75c58e1 320 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 10 317 5.1E-126 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 YPK_3526 e3c80e7bfe426df4c6f63d87d75c58e1 320 Pfam PF01795 MraW methylase family 12 317 1.9E-116 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 YPK_3155 c9db1f3a1a2359430423b0a20b0a6367 174 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 15 168 32.224 T 12-10-2018 IPR033747 Class I PurE YPK_3155 c9db1f3a1a2359430423b0a20b0a6367 174 Gene3D G3DSA:3.40.50.7700 1 174 8.3E-79 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 YPK_3155 c9db1f3a1a2359430423b0a20b0a6367 174 Pfam PF00731 AIR carboxylase 14 162 6.0E-63 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 YPK_3155 c9db1f3a1a2359430423b0a20b0a6367 174 SUPERFAMILY SSF52255 14 172 6.02E-66 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 YPK_3155 c9db1f3a1a2359430423b0a20b0a6367 174 SMART SM01001 13 164 3.4E-100 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 YPK_3155 c9db1f3a1a2359430423b0a20b0a6367 174 PIRSF PIRSF001338 10 173 5.0E-66 T 12-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 YPK_3155 c9db1f3a1a2359430423b0a20b0a6367 174 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 15 169 9.8E-65 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 YPK_1035 b83e57b0876766d6b8765828fbccbc68 290 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 286 4.0E-106 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 YPK_1035 b83e57b0876766d6b8765828fbccbc68 290 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 280 3.3E-80 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 YPK_1035 b83e57b0876766d6b8765828fbccbc68 290 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 YPK_1035 b83e57b0876766d6b8765828fbccbc68 290 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 285 20.37 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 YPK_3172 bda62b7371ab20106678cf0db7eead8b 152 SUPERFAMILY SSF103473 17 138 8.11E-20 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3172 bda62b7371ab20106678cf0db7eead8b 152 Gene3D G3DSA:1.20.1250.20 11 148 7.7E-17 T 12-10-2018 YPK_3172 bda62b7371ab20106678cf0db7eead8b 152 Pfam PF07690 Major Facilitator Superfamily 29 140 1.3E-13 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3359 5da39aa47dbbf7b8369083960d4f90d8 447 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 379 8.4E-150 T 12-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YPK_3359 5da39aa47dbbf7b8369083960d4f90d8 447 PIRSF PIRSF004539 1 447 1.5E-184 T 12-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YPK_3359 5da39aa47dbbf7b8369083960d4f90d8 447 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 443 3.8E-159 T 12-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 YPK_4213 e2c9e5e6d0e3b07fa611924d520dfb19 488 SUPERFAMILY SSF53300 323 465 1.26E-19 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_4213 e2c9e5e6d0e3b07fa611924d520dfb19 488 Gene3D G3DSA:3.40.50.410 326 468 9.0E-6 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_4213 e2c9e5e6d0e3b07fa611924d520dfb19 488 SMART SM00327 324 488 1.4E-5 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_4213 e2c9e5e6d0e3b07fa611924d520dfb19 488 Pfam PF05762 VWA domain containing CoxE-like protein 310 441 1.5E-8 T 12-10-2018 IPR008912 Uncharacterised protein family CoxE-like YPK_4213 e2c9e5e6d0e3b07fa611924d520dfb19 488 Hamap MF_01626 Protein ViaA [viaA]. 1 488 60.3 T 12-10-2018 IPR023481 Uncharacterised protein family ViaA YPK_3906 c1d38c57d77c6826975f1fadb7416e98 445 SUPERFAMILY SSF52540 97 365 5.83E-91 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3906 c1d38c57d77c6826975f1fadb7416e98 445 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 350 359 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_3906 c1d38c57d77c6826975f1fadb7416e98 445 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 31 94 3.0E-4 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_3906 c1d38c57d77c6826975f1fadb7416e98 445 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 359 1.0E-72 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_3906 c1d38c57d77c6826975f1fadb7416e98 445 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 23 425 7.6E-155 T 12-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 YPK_3906 c1d38c57d77c6826975f1fadb7416e98 445 Gene3D G3DSA:3.40.50.12240 25 443 6.8E-138 T 12-10-2018 YPK_3906 c1d38c57d77c6826975f1fadb7416e98 445 SMART SM00382 162 343 2.8E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2321 3416177341cbb65c4ad0854d97438706 287 SUPERFAMILY SSF53335 49 266 4.32E-32 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2321 3416177341cbb65c4ad0854d97438706 287 Gene3D G3DSA:3.40.50.150 2 181 8.2E-22 T 12-10-2018 YPK_2321 3416177341cbb65c4ad0854d97438706 287 Pfam PF00145 C-5 cytosine-specific DNA methylase 77 186 6.4E-12 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 YPK_2724 211ae7f6f70bbc530586f84bba3dd9c7 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 241 8.9E-87 T 12-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 YPK_2724 211ae7f6f70bbc530586f84bba3dd9c7 243 SMART SM00062 22 242 2.5E-84 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_2724 211ae7f6f70bbc530586f84bba3dd9c7 243 Gene3D G3DSA:3.40.190.10 26 240 6.5E-84 T 12-10-2018 YPK_2724 211ae7f6f70bbc530586f84bba3dd9c7 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site YPK_2724 211ae7f6f70bbc530586f84bba3dd9c7 243 SMART SM00079 22 243 5.1E-4 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 YPK_2724 211ae7f6f70bbc530586f84bba3dd9c7 243 Gene3D G3DSA:3.40.190.10 108 201 6.5E-84 T 12-10-2018 YPK_2724 211ae7f6f70bbc530586f84bba3dd9c7 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 4.0E-71 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_2724 211ae7f6f70bbc530586f84bba3dd9c7 243 SUPERFAMILY SSF53850 1 242 1.49E-73 T 12-10-2018 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 Gene3D G3DSA:3.50.7.10 192 372 1.9E-239 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 SUPERFAMILY SSF54849 137 203 4.81E-24 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 12-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 SUPERFAMILY SSF52029 185 376 8.02E-82 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 5.0E-255 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 Gene3D G3DSA:3.30.260.10 136 410 1.9E-239 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 SUPERFAMILY SSF48592 7 521 1.91E-77 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 Gene3D G3DSA:1.10.560.10 8 521 1.9E-239 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 6.7E-93 T 12-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 YPK_3822 c31487beecc4cf7dbb48bd96810885fd 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 547 41.403 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 YPK_1360 dfe0ef2b55ef8fc8912132150073edfb 156 Gene3D G3DSA:3.40.30.10 4 155 4.5E-48 T 12-10-2018 YPK_1360 dfe0ef2b55ef8fc8912132150073edfb 156 Pfam PF00578 AhpC/TSA family 7 134 1.2E-39 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YPK_1360 dfe0ef2b55ef8fc8912132150073edfb 156 PIRSF PIRSF000239 1 145 3.4E-17 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 YPK_1360 dfe0ef2b55ef8fc8912132150073edfb 156 SUPERFAMILY SSF52833 3 154 1.65E-49 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 SUPERFAMILY SSF52540 189 502 2.98E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 1.5E-44 T 12-10-2018 YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 SMART SM00382 210 390 7.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 390 2.2E-89 T 12-10-2018 IPR000523 Magnesium chelatase ChlI domain YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 4.5E-30 T 12-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 3.6E-7 T 12-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 3.6E-7 T 12-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 341 353 3.6E-7 T 12-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 3.6E-7 T 12-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 Gene3D G3DSA:3.40.50.300 191 498 2.8E-55 T 12-10-2018 YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 493 8.7E-213 T 12-10-2018 IPR004482 Mg chelatase-related protein YPK_4062 12e0bcebb30803863d29c9a3205ac0dc 507 SUPERFAMILY SSF54211 10 169 4.93E-30 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0755 91037306731a731becfadad708b9bf57 254 SUPERFAMILY SSF53474 8 236 2.75E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0755 91037306731a731becfadad708b9bf57 254 Pfam PF00975 Thioesterase domain 16 237 2.3E-44 T 12-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 YPK_0755 91037306731a731becfadad708b9bf57 254 Gene3D G3DSA:3.40.50.1820 6 235 3.5E-54 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2915 333f90d13a46ffefe1bedb19985bb62a 180 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 174 2.3E-69 T 12-10-2018 IPR017757 Transcriptional repressor BetI YPK_2915 333f90d13a46ffefe1bedb19985bb62a 180 Gene3D G3DSA:1.10.357.10 1 178 5.9E-40 T 12-10-2018 YPK_2915 333f90d13a46ffefe1bedb19985bb62a 180 SUPERFAMILY SSF46689 3 59 1.13E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2915 333f90d13a46ffefe1bedb19985bb62a 180 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 66 174 3.0E-34 T 12-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal YPK_2915 333f90d13a46ffefe1bedb19985bb62a 180 ProSitePatterns PS01081 TetR-type HTH domain signature. 8 39 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPK_2915 333f90d13a46ffefe1bedb19985bb62a 180 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 180 93.24 T 12-10-2018 IPR017757 Transcriptional repressor BetI YPK_2915 333f90d13a46ffefe1bedb19985bb62a 180 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 41 2.3E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_2915 333f90d13a46ffefe1bedb19985bb62a 180 SUPERFAMILY SSF48498 65 176 2.31E-21 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPK_2603 6043bd77483a12f9f36a27c2042c5fc6 82 Gene3D G3DSA:1.10.1200.10 1 77 1.2E-18 T 12-10-2018 IPR036736 ACP-like superfamily YPK_2603 6043bd77483a12f9f36a27c2042c5fc6 82 SUPERFAMILY SSF47336 1 78 2.75E-11 T 12-10-2018 IPR036736 ACP-like superfamily YPK_2603 6043bd77483a12f9f36a27c2042c5fc6 82 Pfam PF00550 Phosphopantetheine attachment site 14 74 3.8E-8 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain YPK_0754 93be3535cecd1358c2d4b72cb586b8d3 375 TIGRFAM TIGR01761 thiaz-red: thiazolinyl imide reductase 3 355 5.6E-170 T 12-10-2018 IPR010091 Thiazolinyl imide reductase YPK_0754 93be3535cecd1358c2d4b72cb586b8d3 375 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 122 1.6E-20 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YPK_0754 93be3535cecd1358c2d4b72cb586b8d3 375 Gene3D G3DSA:3.30.360.10 126 300 3.6E-121 T 12-10-2018 YPK_0754 93be3535cecd1358c2d4b72cb586b8d3 375 Gene3D G3DSA:3.40.50.720 6 346 3.6E-121 T 12-10-2018 YPK_0754 93be3535cecd1358c2d4b72cb586b8d3 375 SUPERFAMILY SSF51735 6 140 5.58E-14 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0754 93be3535cecd1358c2d4b72cb586b8d3 375 PIRSF PIRSF017494 1 369 1.3E-143 T 12-10-2018 IPR010091 Thiazolinyl imide reductase YPK_2607 5ba887914dcdf99a74fef2883af1dec8 239 SUPERFAMILY SSF52096 11 230 2.19E-36 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_2607 5ba887914dcdf99a74fef2883af1dec8 239 Gene3D G3DSA:3.90.226.10 10 230 1.1E-35 T 12-10-2018 YPK_2607 5ba887914dcdf99a74fef2883af1dec8 239 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 229 3.1E-30 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 632 36.915 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 4.5E-291 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:2.60.34.10 383 523 8.7E-68 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 Pfam PF00012 Hsp70 protein 4 602 2.6E-266 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 SUPERFAMILY SSF100920 384 540 1.96E-61 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 365 385 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 138 158 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 198 208 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 3 16 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 469 485 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 31 43 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 54 62 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 334 350 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 PRINTS PR00301 70kDa heat shock protein signature 388 407 3.0E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 SUPERFAMILY SSF53067 187 382 8.43E-68 T 12-10-2018 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:3.90.640.10 229 316 5.2E-171 T 12-10-2018 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:3.30.420.40 5 379 5.2E-171 T 12-10-2018 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:1.20.1270.10 524 603 5.9E-29 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 SUPERFAMILY SSF53067 4 183 9.39E-66 T 12-10-2018 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 Gene3D G3DSA:3.30.420.40 180 366 5.2E-171 T 12-10-2018 YPK_3594 7eb2513d376e655a2ec202a11ca79369 636 SUPERFAMILY SSF100934 535 608 3.73E-6 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 Gene3D G3DSA:3.90.1150.10 767 902 5.9E-42 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 Pfam PF02347 Glycine cleavage system P-protein 16 440 6.1E-179 T 12-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 Pfam PF02347 Glycine cleavage system P-protein 477 739 1.2E-8 T 12-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 958 25.392 T 12-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 SUPERFAMILY SSF53383 479 953 3.25E-97 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 Gene3D G3DSA:3.40.640.10 525 756 2.2E-60 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 Gene3D G3DSA:3.40.640.10 96 355 1.6E-96 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 952 0.0 T 12-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 YPK_0869 547a8be9b36feee1f8d87c42c71af5b6 959 SUPERFAMILY SSF53383 17 440 8.77E-98 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0125 99d67a06ff88dacc193d876177cfe720 507 Pfam PF00005 ABC transporter 22 171 1.8E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0125 99d67a06ff88dacc193d876177cfe720 507 Pfam PF00005 ABC transporter 272 425 3.5E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0125 99d67a06ff88dacc193d876177cfe720 507 SUPERFAMILY SSF52540 271 486 1.13E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0125 99d67a06ff88dacc193d876177cfe720 507 Gene3D G3DSA:3.40.50.300 261 506 3.7E-44 T 12-10-2018 YPK_0125 99d67a06ff88dacc193d876177cfe720 507 SMART SM00382 280 485 4.4E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0125 99d67a06ff88dacc193d876177cfe720 507 SMART SM00382 31 218 6.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0125 99d67a06ff88dacc193d876177cfe720 507 SUPERFAMILY SSF52540 5 224 1.61E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0125 99d67a06ff88dacc193d876177cfe720 507 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0125 99d67a06ff88dacc193d876177cfe720 507 Gene3D G3DSA:3.40.50.300 1 241 3.0E-58 T 12-10-2018 YPK_1993 cbdca54b98dac0e81aa3b0c503537aff 334 Hamap MF_00540 Adenosine deaminase [add]. 1 331 52.585 T 12-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 YPK_1993 cbdca54b98dac0e81aa3b0c503537aff 334 ProSitePatterns PS00485 Adenosine and AMP deaminase signature. 274 280 - T 12-10-2018 IPR006650 Adenosine/AMP deaminase active site GO:0009168|GO:0019239 Reactome: R-HSA-74217 YPK_1993 cbdca54b98dac0e81aa3b0c503537aff 334 Pfam PF00962 Adenosine/AMP deaminase 6 329 1.0E-94 T 12-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 YPK_1993 cbdca54b98dac0e81aa3b0c503537aff 334 Gene3D G3DSA:3.20.20.140 4 332 1.6E-97 T 12-10-2018 YPK_1993 cbdca54b98dac0e81aa3b0c503537aff 334 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 330 4.6E-108 T 12-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 YPK_1993 cbdca54b98dac0e81aa3b0c503537aff 334 SUPERFAMILY SSF51556 5 326 1.1E-75 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_3000 5617475800bc71c40f24777581194307 250 Pfam PF13344 Haloacid dehalogenase-like hydrolase 6 105 1.3E-23 T 12-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA YPK_3000 5617475800bc71c40f24777581194307 250 Gene3D G3DSA:3.40.50.1000 71 174 2.7E-83 T 12-10-2018 IPR023214 HAD superfamily YPK_3000 5617475800bc71c40f24777581194307 250 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 6 223 4.6E-63 T 12-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA YPK_3000 5617475800bc71c40f24777581194307 250 Gene3D G3DSA:3.40.50.1000 6 232 2.7E-83 T 12-10-2018 IPR023214 HAD superfamily YPK_3000 5617475800bc71c40f24777581194307 250 SUPERFAMILY SSF56784 1 247 6.67E-64 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3000 5617475800bc71c40f24777581194307 250 Pfam PF13242 HAD-hyrolase-like 174 246 5.2E-20 T 12-10-2018 YPK_3832 93ea560bc63585b895ee6eca404dd2d5 191 Gene3D G3DSA:1.10.357.10 1 183 1.2E-27 T 12-10-2018 YPK_3832 93ea560bc63585b895ee6eca404dd2d5 191 SUPERFAMILY SSF46689 3 66 8.72E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3832 93ea560bc63585b895ee6eca404dd2d5 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 49 3.5E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_3832 93ea560bc63585b895ee6eca404dd2d5 191 SUPERFAMILY SSF48498 74 157 6.67E-5 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPK_1854 cac3aea8b2bd48e22554d4669b300f51 78 PIRSF PIRSF002855 1 78 9.7E-29 T 12-10-2018 IPR016367 Murein-lipoprotein YPK_1854 cac3aea8b2bd48e22554d4669b300f51 78 Gene3D G3DSA:1.20.5.190 22 77 8.4E-31 T 12-10-2018 YPK_1854 cac3aea8b2bd48e22554d4669b300f51 78 SUPERFAMILY SSF58042 24 73 2.09E-22 T 12-10-2018 YPK_1854 cac3aea8b2bd48e22554d4669b300f51 78 Pfam PF04728 Lipoprotein leucine-zipper 26 78 1.4E-24 T 12-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 YPK_3137 482a08a90820614331cafc9d6da6511b 295 SUPERFAMILY SSF52540 17 177 1.27E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3137 482a08a90820614331cafc9d6da6511b 295 Gene3D G3DSA:3.40.50.300 13 204 6.3E-30 T 12-10-2018 YPK_3137 482a08a90820614331cafc9d6da6511b 295 Pfam PF01926 50S ribosome-binding GTPase 39 135 3.1E-15 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_0061 f69f8627422c1696ec15f1d7487b5d83 396 Pfam PF13356 Arm DNA-binding domain 3 88 1.9E-19 T 12-10-2018 IPR025166 Integrase, DNA-binding domain YPK_0061 f69f8627422c1696ec15f1d7487b5d83 396 SUPERFAMILY SSF56349 98 380 3.83E-62 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_0061 f69f8627422c1696ec15f1d7487b5d83 396 Pfam PF00589 Phage integrase family 206 370 2.1E-24 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_0061 f69f8627422c1696ec15f1d7487b5d83 396 Gene3D G3DSA:3.30.160.390 1 88 9.9E-35 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YPK_0061 f69f8627422c1696ec15f1d7487b5d83 396 Gene3D G3DSA:1.10.150.130 89 204 6.6E-33 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_0061 f69f8627422c1696ec15f1d7487b5d83 396 Gene3D G3DSA:1.10.443.10 205 386 1.8E-17 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_4088 c069bff5c66981490f5f952b7e1e298d 258 Gene3D G3DSA:3.40.1160.10 1 258 2.7E-73 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_4088 c069bff5c66981490f5f952b7e1e298d 258 Hamap MF_00082 Acetylglutamate kinase [argB]. 2 251 43.884 T 12-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_4088 c069bff5c66981490f5f952b7e1e298d 258 Pfam PF00696 Amino acid kinase family 5 235 1.2E-39 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 YPK_4088 c069bff5c66981490f5f952b7e1e298d 258 TIGRFAM TIGR00761 argB: acetylglutamate kinase 5 234 1.8E-73 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_4088 c069bff5c66981490f5f952b7e1e298d 258 PIRSF PIRSF000728 1 258 4.0E-71 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 YPK_4088 c069bff5c66981490f5f952b7e1e298d 258 SUPERFAMILY SSF53633 1 256 6.28E-59 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily YPK_3059 7ee90570edb16ad577da496f75d75e30 125 Pfam PF06836 Protein of unknown function (DUF1240) 39 102 5.3E-18 T 12-10-2018 IPR010665 Protein of unknown function DUF1240 YPK_1378 3acbd16af9040f570c302bd22f390741 557 ProSitePatterns PS00523 Sulfatases signature 1. 130 142 - T 12-10-2018 IPR024607 Sulfatase, conserved site YPK_1378 3acbd16af9040f570c302bd22f390741 557 ProSitePatterns PS00149 Sulfatases signature 2. 175 185 - T 12-10-2018 IPR024607 Sulfatase, conserved site YPK_1378 3acbd16af9040f570c302bd22f390741 557 SUPERFAMILY SSF53649 57 533 1.89E-95 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_1378 3acbd16af9040f570c302bd22f390741 557 Gene3D G3DSA:3.40.720.10 55 469 2.9E-94 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_1378 3acbd16af9040f570c302bd22f390741 557 Gene3D G3DSA:3.30.1120.10 477 541 7.4E-6 T 12-10-2018 YPK_1378 3acbd16af9040f570c302bd22f390741 557 Pfam PF00884 Sulfatase 58 407 2.0E-93 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YPK_2739 6a9bf7a5e7dbd0d645acd968a7316311 433 Pfam PF03222 Tryptophan/tyrosine permease family 32 356 4.8E-10 T 12-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 YPK_2739 6a9bf7a5e7dbd0d645acd968a7316311 433 TIGRFAM TIGR00814 stp: serine transporter 20 419 5.7E-179 T 12-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 Pfam PF00813 FliP family 33 231 4.4E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 164 179 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 212 224 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 30 231 3.6E-84 T 12-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 164 184 9.0E-68 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 209 234 9.0E-68 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 185 206 9.0E-68 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 70 9.0E-68 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 31 50 9.0E-68 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_3902 d75d6013927b65e38ed16ac211fc9b75 236 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 70 89 9.0E-68 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 YPK_0525 c11ac3d021a69d95fa331dab2f8bbc12 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.996 T 12-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid YPK_0525 c11ac3d021a69d95fa331dab2f8bbc12 130 SUPERFAMILY SSF54211 5 130 2.69E-49 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_0525 c11ac3d021a69d95fa331dab2f8bbc12 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 12-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 YPK_0525 c11ac3d021a69d95fa331dab2f8bbc12 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 6.6E-46 T 12-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 YPK_0525 c11ac3d021a69d95fa331dab2f8bbc12 130 Gene3D G3DSA:3.30.230.10 1 130 4.5E-54 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 PRINTS PR00050 Cold shock protein signature 7 22 1.8E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 PRINTS PR00050 Cold shock protein signature 43 61 1.8E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 PRINTS PR00050 Cold shock protein signature 28 37 1.8E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 SMART SM00357 6 70 5.2E-31 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 SUPERFAMILY SSF50249 3 69 5.49E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 12-10-2018 IPR019844 Cold-shock conserved site YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 Gene3D G3DSA:2.40.50.140 2 69 3.4E-29 T 12-10-2018 YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 PIRSF PIRSF002599 1 70 1.3E-23 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_0444 79ee599b5c8567c7d3bf9438f63c0273 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 2.1E-32 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2068 a0510fcc7e2bcf65ad0ba5773b891e7c 301 SUPERFAMILY SSF161098 99 282 1.96E-23 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2068 a0510fcc7e2bcf65ad0ba5773b891e7c 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 299 3.2E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2068 a0510fcc7e2bcf65ad0ba5773b891e7c 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 70 1.3E-13 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_2068 a0510fcc7e2bcf65ad0ba5773b891e7c 301 Gene3D G3DSA:1.10.3720.10 99 297 1.3E-16 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2509 382be604d0f3a09a359c6bc9b0c62ef9 280 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 275 2.2E-65 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 YPK_2509 382be604d0f3a09a359c6bc9b0c62ef9 280 SUPERFAMILY SSF56529 62 277 1.96E-79 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_2509 382be604d0f3a09a359c6bc9b0c62ef9 280 Gene3D G3DSA:3.90.850.10 67 280 1.4E-81 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_0082 e401ef15b3f73838f8fe0c6207374513 509 Pfam PF07730 Histidine kinase 310 373 8.1E-10 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 YPK_0082 e401ef15b3f73838f8fe0c6207374513 509 Gene3D G3DSA:3.30.565.10 388 502 4.2E-26 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_0082 e401ef15b3f73838f8fe0c6207374513 509 SMART SM00387 413 503 6.3E-8 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0082 e401ef15b3f73838f8fe0c6207374513 509 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 416 500 1.4E-6 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_0082 e401ef15b3f73838f8fe0c6207374513 509 Pfam PF05231 MASE1 7 282 7.1E-17 T 12-10-2018 IPR007895 MASE1 YPK_0082 e401ef15b3f73838f8fe0c6207374513 509 SUPERFAMILY SSF55874 384 500 8.25E-17 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 440 455 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 147 166 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 375 393 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 56 81 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 276 295 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 464 481 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 129 147 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 399 417 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 246 262 1.7E-77 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 SUPERFAMILY SSF56235 25 587 5.4E-185 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 Gene3D G3DSA:3.60.20.40 375 579 2.2E-68 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 Gene3D G3DSA:1.10.246.130 262 374 8.9E-42 T 12-10-2018 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 34 551 8.6E-175 T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 375 399 - T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 YPK_3269 5459c7fb003c7de0cec9b7f106c6788c 587 Pfam PF01019 Gamma-glutamyltranspeptidase 49 578 2.7E-182 T 12-10-2018 YPK_2120 237dadbe122640e0e1b2bca9c57ad6ee 90 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 83 1.0E-42 T 12-10-2018 IPR027354 YcgL domain YPK_2120 237dadbe122640e0e1b2bca9c57ad6ee 90 SUPERFAMILY SSF160191 1 87 1.57E-38 T 12-10-2018 IPR038068 YcgL-like superfamily YPK_2120 237dadbe122640e0e1b2bca9c57ad6ee 90 Pfam PF05166 YcgL domain 3 75 1.7E-33 T 12-10-2018 IPR027354 YcgL domain YPK_2120 237dadbe122640e0e1b2bca9c57ad6ee 90 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.625 T 12-10-2018 IPR027354 YcgL domain YPK_2120 237dadbe122640e0e1b2bca9c57ad6ee 90 Gene3D G3DSA:3.10.510.20 1 74 1.4E-31 T 12-10-2018 IPR038068 YcgL-like superfamily YPK_2219 ba4b2541b88e74da8782907cf02e29c8 190 SUPERFAMILY SSF51182 1 187 1.69E-54 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_2219 ba4b2541b88e74da8782907cf02e29c8 190 Gene3D G3DSA:2.60.120.10 115 157 5.8E-38 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_2219 ba4b2541b88e74da8782907cf02e29c8 190 Pfam PF05962 HutD 14 167 7.7E-52 T 12-10-2018 IPR010282 Uncharacterised protein family HutD/Ves YPK_2219 ba4b2541b88e74da8782907cf02e29c8 190 Gene3D G3DSA:2.60.120.10 14 114 5.8E-38 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1980 80ddf7259c2e25ef7940f62dca48eb2a 222 Pfam PF13500 AAA domain 4 205 3.0E-29 T 12-10-2018 YPK_1980 80ddf7259c2e25ef7940f62dca48eb2a 222 Gene3D G3DSA:3.40.50.300 3 220 7.1E-53 T 12-10-2018 YPK_1980 80ddf7259c2e25ef7940f62dca48eb2a 222 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 214 24.798 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YPK_1980 80ddf7259c2e25ef7940f62dca48eb2a 222 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 172 9.3E-44 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YPK_1980 80ddf7259c2e25ef7940f62dca48eb2a 222 PIRSF PIRSF006755 1 221 1.7E-68 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YPK_1980 80ddf7259c2e25ef7940f62dca48eb2a 222 SUPERFAMILY SSF52540 1 207 2.03E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1633 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Gene3D G3DSA:3.40.50.2300 59 326 1.7E-51 T 12-10-2018 YPK_1633 9c3b30dad388d79d1b45b0dad1a8fe3e 346 SMART SM00354 7 78 7.1E-8 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1633 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Pfam PF13377 Periplasmic binding protein-like domain 175 328 1.1E-21 T 12-10-2018 YPK_1633 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Gene3D G3DSA:1.10.260.40 1 51 1.1E-13 T 12-10-2018 YPK_1633 9c3b30dad388d79d1b45b0dad1a8fe3e 346 SUPERFAMILY SSF53822 67 327 4.71E-41 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1633 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 52 1.0E-9 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1633 9c3b30dad388d79d1b45b0dad1a8fe3e 346 Gene3D G3DSA:3.40.50.2300 166 311 1.7E-51 T 12-10-2018 YPK_1633 9c3b30dad388d79d1b45b0dad1a8fe3e 346 SUPERFAMILY SSF47413 6 58 1.03E-10 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_3885 5729baa30a2e6b3d348a822d4c6bab2c 437 Gene3D G3DSA:3.80.30.20 21 354 2.0E-85 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YPK_3885 5729baa30a2e6b3d348a822d4c6bab2c 437 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 16 427 1.4E-175 T 12-10-2018 IPR026332 Putative heme utilization radical SAM enzyme HutW YPK_3885 5729baa30a2e6b3d348a822d4c6bab2c 437 SUPERFAMILY SSF102114 5 423 1.57E-90 T 12-10-2018 YPK_3885 5729baa30a2e6b3d348a822d4c6bab2c 437 SMART SM00729 53 275 5.4E-54 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_3885 5729baa30a2e6b3d348a822d4c6bab2c 437 Pfam PF04055 Radical SAM superfamily 59 228 4.9E-18 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_3331 37920e58cb83768cb71f14630074dd78 67 Pfam PF13318 Protein of unknown function (DUF4089) 16 65 7.2E-17 T 12-10-2018 IPR025148 Protein of unknown function DUF4089 YPK_3777 5ec2aa88530d760c977224c092e09b57 221 Hamap MF_01606 Iron-sulfur cluster repair protein YtfE [ytfE]. 1 221 47.619 T 12-10-2018 IPR023742 Iron-sulfur cluster repair protein YftE GO:0030091 YPK_3777 5ec2aa88530d760c977224c092e09b57 221 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 8 217 1.4E-81 T 12-10-2018 IPR019903 Repair of iron centres family YPK_3777 5ec2aa88530d760c977224c092e09b57 221 Pfam PF04405 Domain of Unknown function (DUF542) 5 59 8.0E-20 T 12-10-2018 IPR019903 Repair of iron centres family YPK_3777 5ec2aa88530d760c977224c092e09b57 221 Pfam PF01814 Hemerythrin HHE cation binding domain 81 217 3.2E-27 T 12-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 YPK_3777 5ec2aa88530d760c977224c092e09b57 221 Gene3D G3DSA:1.20.120.520 35 220 3.2E-30 T 12-10-2018 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 7.6E-25 T 12-10-2018 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 7.6E-25 T 12-10-2018 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 7.6E-25 T 12-10-2018 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 7.6E-25 T 12-10-2018 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 SMART SM00065 17 164 2.6E-26 T 12-10-2018 IPR003018 GAF domain GO:0005515 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 SUPERFAMILY SSF52009 293 413 3.66E-26 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 Gene3D G3DSA:1.10.274.10 190 313 1.1E-55 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 Gene3D G3DSA:3.20.20.60 400 741 2.0E-101 T 12-10-2018 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 320 391 7.2E-16 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 SUPERFAMILY SSF51621 420 715 4.19E-95 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 Gene3D G3DSA:3.30.450.40 1 163 1.3E-44 T 12-10-2018 IPR029016 GAF-like domain superfamily YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 175 730 1.5E-130 T 12-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 419 707 6.1E-103 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 Pfam PF01590 GAF domain 18 151 1.7E-15 T 12-10-2018 IPR003018 GAF domain GO:0005515 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 174 294 1.1E-22 T 12-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 SUPERFAMILY SSF55781 4 159 1.74E-30 T 12-10-2018 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 Gene3D G3DSA:3.50.30.10 175 399 1.1E-55 T 12-10-2018 YPK_1034 d7f2ed4c9a40aedbf65446d3a3eb6651 748 SUPERFAMILY SSF47831 202 309 8.24E-26 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 Pfam PF05593 RHS Repeat 1043 1079 1.0E-5 T 12-10-2018 IPR031325 RHS repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 Pfam PF05593 RHS Repeat 689 725 1.3E-6 T 12-10-2018 IPR031325 RHS repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 Pfam PF05593 RHS Repeat 837 872 7.7E-5 T 12-10-2018 IPR031325 RHS repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 Gene3D G3DSA:2.180.10.10 1241 1372 1.4E-29 T 12-10-2018 YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 Pfam PF03527 RHS protein 1269 1302 1.0E-10 T 12-10-2018 IPR001826 RHS protein YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 Gene3D G3DSA:3.90.930.1 594 735 1.3E-11 T 12-10-2018 YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 Gene3D G3DSA:3.90.930.1 736 872 3.9E-10 T 12-10-2018 YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 Gene3D G3DSA:3.90.930.1 873 1028 1.6E-8 T 12-10-2018 YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 PRINTS PR00394 RHS protein signature 1263 1283 4.1E-14 T 12-10-2018 IPR001826 RHS protein YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 PRINTS PR00394 RHS protein signature 1317 1337 4.1E-14 T 12-10-2018 IPR001826 RHS protein YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 PRINTS PR00394 RHS protein signature 1340 1359 4.1E-14 T 12-10-2018 IPR001826 RHS protein YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1297 1372 4.2E-25 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1064 1089 0.0023 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 605 646 1.2E-10 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1134 1171 3.2E-8 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 689 729 1.4E-10 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 647 688 1.8E-10 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 857 893 3.0E-7 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 495 535 3.5E-8 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 773 813 2.6E-9 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 815 855 1.6E-10 T 12-10-2018 IPR006530 YD repeat YPK_0766 96ebd144067a1a64989528a562bfbdee 1466 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 735 771 0.0015 T 12-10-2018 IPR006530 YD repeat YPK_0982 4178ea8b48f9d3c8d1296452e5ecc11c 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0982 4178ea8b48f9d3c8d1296452e5ecc11c 284 SUPERFAMILY SSF51569 3 283 2.05E-101 T 12-10-2018 YPK_0982 4178ea8b48f9d3c8d1296452e5ecc11c 284 PIRSF PIRSF001359 1 284 4.6E-109 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0982 4178ea8b48f9d3c8d1296452e5ecc11c 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 283 3.6E-100 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0982 4178ea8b48f9d3c8d1296452e5ecc11c 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 2.5E-101 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 YPK_0982 4178ea8b48f9d3c8d1296452e5ecc11c 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 284 1.9E-165 T 12-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 YPK_0982 4178ea8b48f9d3c8d1296452e5ecc11c 284 Gene3D G3DSA:3.20.20.70 2 284 1.4E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2417 62de33f264b731dbbcd39968341644e9 314 Pfam PF10135 Rod binding protein 49 95 2.5E-16 T 12-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal YPK_2417 62de33f264b731dbbcd39968341644e9 314 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 161 295 3.1E-20 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 YPK_2417 62de33f264b731dbbcd39968341644e9 314 Gene3D G3DSA:2.10.70.40 186 238 5.5E-46 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 SMART SM00047 140 306 1.6E-42 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 YPK_2417 62de33f264b731dbbcd39968341644e9 314 Gene3D G3DSA:1.10.530.10 152 291 5.5E-46 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 11 295 1.7E-107 T 12-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 213 234 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 257 276 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 235 256 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 147 170 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 27 50 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 52 72 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 171 189 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 5 25 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 191 212 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 110 135 5.8E-99 T 12-10-2018 YPK_2417 62de33f264b731dbbcd39968341644e9 314 PRINTS PR01002 Flagellar protein FlgJ signature 277 295 5.8E-99 T 12-10-2018 YPK_1707 a1d5b611326bef9b9bd2e64e4bf4560e 400 Pfam PF12704 MacB-like periplasmic core domain 27 209 5.2E-12 T 12-10-2018 IPR025857 MacB-like periplasmic core domain YPK_1707 a1d5b611326bef9b9bd2e64e4bf4560e 400 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 400 5.5E-139 T 12-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 YPK_1707 a1d5b611326bef9b9bd2e64e4bf4560e 400 Pfam PF02687 FtsX-like permease family 297 393 5.4E-14 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YPK_3084 74953bd31c43734babcc5e7184132fb5 200 Gene3D G3DSA:1.20.120.1760 7 199 1.0E-22 T 12-10-2018 YPK_3084 74953bd31c43734babcc5e7184132fb5 200 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 94 6.0E-10 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 YPK_1756 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 54 67 5.6E-45 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YPK_1756 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 160 176 5.6E-45 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YPK_1756 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 251 274 5.6E-45 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YPK_1756 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 93 105 5.6E-45 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YPK_1756 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 126 146 5.6E-45 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YPK_1756 a43c81b49b466143331a631451a5cbab 295 PRINTS PR00996 Glutamate methyltransferase family signature 232 246 5.6E-45 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YPK_1756 a43c81b49b466143331a631451a5cbab 295 Gene3D G3DSA:1.10.155.10 19 98 3.3E-32 T 12-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily YPK_1756 a43c81b49b466143331a631451a5cbab 295 Pfam PF03705 CheR methyltransferase, all-alpha domain 34 85 1.9E-19 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal YPK_1756 a43c81b49b466143331a631451a5cbab 295 SMART SM00138 32 292 4.6E-114 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 YPK_1756 a43c81b49b466143331a631451a5cbab 295 Pfam PF01739 CheR methyltransferase, SAM binding domain 100 287 2.9E-58 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal YPK_1756 a43c81b49b466143331a631451a5cbab 295 SUPERFAMILY SSF53335 100 289 8.84E-59 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_1756 a43c81b49b466143331a631451a5cbab 295 PIRSF PIRSF000410 15 293 8.0E-99 T 12-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR YPK_1756 a43c81b49b466143331a631451a5cbab 295 SUPERFAMILY SSF47757 23 99 6.02E-25 T 12-10-2018 YPK_1756 a43c81b49b466143331a631451a5cbab 295 Gene3D G3DSA:3.40.50.150 99 292 6.3E-71 T 12-10-2018 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 SUPERFAMILY SSF54913 1 112 2.13E-42 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 PIRSF PIRSF039144 1 112 2.3E-54 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 SMART SM00938 4 105 5.9E-61 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 PRINTS PR00340 P-II protein signature 83 103 3.1E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 PRINTS PR00340 P-II protein signature 2 17 3.1E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 PRINTS PR00340 P-II protein signature 23 41 3.1E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 PRINTS PR00340 P-II protein signature 52 75 3.1E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.8E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 Gene3D G3DSA:3.30.70.120 1 112 9.8E-45 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 12-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 YPK_3220 70eb157966fa0ccc6e1de75f03e8f716 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 YPK_3653 e05939e1e9501292668ad66514be4b51 339 Gene3D G3DSA:3.40.50.2300 129 265 1.5E-109 T 12-10-2018 YPK_3653 e05939e1e9501292668ad66514be4b51 339 SUPERFAMILY SSF53822 26 339 1.08E-81 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_3653 e05939e1e9501292668ad66514be4b51 339 Gene3D G3DSA:3.40.50.2300 29 299 1.5E-109 T 12-10-2018 YPK_3653 e05939e1e9501292668ad66514be4b51 339 Pfam PF13407 Periplasmic binding protein domain 29 284 6.7E-53 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_3622 a94b257c8f4d9190eeca8b13a1c2426b 326 Gene3D G3DSA:1.10.150.210 121 183 4.0E-116 T 12-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 YPK_3622 a94b257c8f4d9190eeca8b13a1c2426b 326 Gene3D G3DSA:3.30.70.2020 38 320 4.0E-116 T 12-10-2018 YPK_3622 a94b257c8f4d9190eeca8b13a1c2426b 326 Pfam PF12710 haloacid dehalogenase-like hydrolase 146 282 8.2E-17 T 12-10-2018 YPK_3622 a94b257c8f4d9190eeca8b13a1c2426b 326 SUPERFAMILY SSF56784 112 316 2.27E-48 T 12-10-2018 IPR036412 HAD-like superfamily YPK_3622 a94b257c8f4d9190eeca8b13a1c2426b 326 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 98 316 2.8E-87 T 12-10-2018 YPK_3622 a94b257c8f4d9190eeca8b13a1c2426b 326 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 113 283 8.7E-24 T 12-10-2018 YPK_3622 a94b257c8f4d9190eeca8b13a1c2426b 326 Gene3D G3DSA:3.40.50.1000 107 316 4.0E-116 T 12-10-2018 IPR023214 HAD superfamily YPK_2231 ca689443e1ce5f45eabf897f2723455c 433 Pfam PF00155 Aminotransferase class I and II 106 409 1.6E-28 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_2231 ca689443e1ce5f45eabf897f2723455c 433 Gene3D G3DSA:3.90.1150.10 56 425 6.2E-102 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2231 ca689443e1ce5f45eabf897f2723455c 433 Gene3D G3DSA:3.40.640.10 101 319 6.2E-102 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2231 ca689443e1ce5f45eabf897f2723455c 433 SUPERFAMILY SSF53383 20 428 1.63E-92 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3923 6b947e8cd8d083db0dfa235f45dab3aa 551 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 179 204 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site YPK_3923 6b947e8cd8d083db0dfa235f45dab3aa 551 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 4 551 0.0 T 12-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 YPK_3923 6b947e8cd8d083db0dfa235f45dab3aa 551 Pfam PF00474 Sodium:solute symporter family 64 470 7.4E-128 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YPK_3923 6b947e8cd8d083db0dfa235f45dab3aa 551 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 64 468 3.9E-63 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YPK_3923 6b947e8cd8d083db0dfa235f45dab3aa 551 Gene3D G3DSA:1.20.1730.10 34 548 5.9E-62 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily YPK_3923 6b947e8cd8d083db0dfa235f45dab3aa 551 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 2 551 50.869 T 12-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 YPK_2300 791915f09a508cb6b3d15eb0b7b0f965 389 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 108 273 1.3E-32 T 12-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain YPK_2300 791915f09a508cb6b3d15eb0b7b0f965 389 Pfam PF17482 Phage tail sheath C-terminal domain 274 376 2.9E-18 T 12-10-2018 IPR020287 Tail sheath protein, C-terminal domain YPK_1354 f1a1ab618d706c360410c5f197b0c2a5 235 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 7 235 58.653 T 12-10-2018 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae YPK_1354 f1a1ab618d706c360410c5f197b0c2a5 235 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 8 233 7.7E-85 T 12-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 YPK_1354 f1a1ab618d706c360410c5f197b0c2a5 235 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 133 160 1.3E-6 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_1354 f1a1ab618d706c360410c5f197b0c2a5 235 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 45 65 1.3E-6 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like YPK_1354 f1a1ab618d706c360410c5f197b0c2a5 235 Pfam PF00308 Bacterial dnaA protein 18 214 1.6E-17 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA YPK_1354 f1a1ab618d706c360410c5f197b0c2a5 235 SUPERFAMILY SSF52540 20 213 1.3E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1354 f1a1ab618d706c360410c5f197b0c2a5 235 Gene3D G3DSA:3.40.50.300 2 166 1.6E-35 T 12-10-2018 YPK_1354 f1a1ab618d706c360410c5f197b0c2a5 235 Gene3D G3DSA:1.10.8.60 169 235 1.5E-27 T 12-10-2018 YPK_3405 3f488f48da8bbc3a084ae60b9b608e06 83 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 1 61 1.5E-23 T 12-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system YPK_3013 d2f481ccbf5cb38f40e104270021ca8d 241 PIRSF PIRSF039085 1 241 4.0E-105 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YPK_3013 d2f481ccbf5cb38f40e104270021ca8d 241 SMART SM00382 26 213 7.8E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3013 d2f481ccbf5cb38f40e104270021ca8d 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3013 d2f481ccbf5cb38f40e104270021ca8d 241 Gene3D G3DSA:3.40.50.300 1 240 1.7E-76 T 12-10-2018 YPK_3013 d2f481ccbf5cb38f40e104270021ca8d 241 Pfam PF00005 ABC transporter 18 165 6.8E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3013 d2f481ccbf5cb38f40e104270021ca8d 241 SUPERFAMILY SSF52540 1 235 3.17E-77 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1732 51f8049ddef92f3187c5dc480633ab6b 299 Pfam PF11004 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase 25 298 2.9E-113 T 12-10-2018 IPR021266 Kdo hydroxylase YPK_3686 b8f52370fa58f47fc99c246f155453d5 522 SUPERFAMILY SSF53850 21 517 3.44E-97 T 12-10-2018 YPK_3686 b8f52370fa58f47fc99c246f155453d5 522 Gene3D G3DSA:3.10.105.10 283 498 6.6E-94 T 12-10-2018 YPK_3686 b8f52370fa58f47fc99c246f155453d5 522 PIRSF PIRSF002741 11 519 2.0E-61 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YPK_3686 b8f52370fa58f47fc99c246f155453d5 522 Gene3D G3DSA:3.40.190.10 202 508 6.6E-94 T 12-10-2018 YPK_3686 b8f52370fa58f47fc99c246f155453d5 522 Gene3D G3DSA:3.90.76.10 41 201 6.6E-94 T 12-10-2018 YPK_3686 b8f52370fa58f47fc99c246f155453d5 522 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 440 1.5E-63 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 SUPERFAMILY SSF51905 1 314 3.8E-56 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 Gene3D G3DSA:3.50.50.60 118 244 4.8E-129 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 1.8E-125 T 12-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 Gene3D G3DSA:3.50.50.60 9 312 4.8E-129 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 12-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 4.5E-51 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.9E-76 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 6.9E-41 T 12-10-2018 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 6.9E-41 T 12-10-2018 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 6.9E-41 T 12-10-2018 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 6.9E-41 T 12-10-2018 YPK_2687 397036a1e8a90c3a17e3300a3baaa2e4 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 6.9E-41 T 12-10-2018 YPK_2117 cd5d9040c065ae598cc9767cca6ce3fd 148 Pfam PF03692 Putative zinc- or iron-chelating domain 24 92 3.0E-7 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein YPK_2117 cd5d9040c065ae598cc9767cca6ce3fd 148 PIRSF PIRSF006173 1 145 7.9E-66 T 12-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 YPK_2117 cd5d9040c065ae598cc9767cca6ce3fd 148 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 145 40.958 T 12-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 YPK_3404 3d9ab3d45ddce46671da700a8c7a2600 547 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 373 537 8.7E-62 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 YPK_3404 3d9ab3d45ddce46671da700a8c7a2600 547 Pfam PF05681 Fumarate hydratase (Fumerase) 51 325 3.9E-84 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 YPK_3404 3d9ab3d45ddce46671da700a8c7a2600 547 PIRSF PIRSF001394 30 547 5.9E-231 T 12-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 YPK_3404 3d9ab3d45ddce46671da700a8c7a2600 547 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 75 323 5.4E-31 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 YPK_3404 3d9ab3d45ddce46671da700a8c7a2600 547 Pfam PF05683 Fumarase C-terminus 332 537 8.1E-94 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 YPK_3404 3d9ab3d45ddce46671da700a8c7a2600 547 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YPK_3404 3d9ab3d45ddce46671da700a8c7a2600 547 Gene3D G3DSA:3.20.130.10 347 537 3.2E-58 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 YPK_3404 3d9ab3d45ddce46671da700a8c7a2600 547 SUPERFAMILY SSF117457 361 536 9.02E-63 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 1.2E-159 T 12-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 SMART SM00116 96 144 7.2E-9 T 12-10-2018 IPR000644 CBS domain YPK_1302 3d930c20dcb434140018d68f6686ba28 487 SMART SM00116 158 206 4.2E-9 T 12-10-2018 IPR000644 CBS domain YPK_1302 3d930c20dcb434140018d68f6686ba28 487 SUPERFAMILY SSF51412 1 477 8.37E-124 T 12-10-2018 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 2.3E-195 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 12-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 SUPERFAMILY SSF54631 95 203 3.16E-25 T 12-10-2018 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 Pfam PF00571 CBS domain 95 140 1.1E-7 T 12-10-2018 IPR000644 CBS domain YPK_1302 3d930c20dcb434140018d68f6686ba28 487 Pfam PF00571 CBS domain 149 202 3.1E-6 T 12-10-2018 IPR000644 CBS domain YPK_1302 3d930c20dcb434140018d68f6686ba28 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 84.055 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 Gene3D G3DSA:3.20.20.70 1 486 4.7E-206 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 SMART SM01240 7 473 0.0 T 12-10-2018 YPK_1302 3d930c20dcb434140018d68f6686ba28 487 PIRSF PIRSF000130 1 487 2.7E-195 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 YPK_1039 65a45e1b8a4158650227a9878b8fda64 156 Pfam PF10713 Protein of unknown function (DUF2509) 18 154 2.4E-43 T 12-10-2018 IPR019652 Protein of unknown function DUF2509 YPK_1370 1a24278fc87b49941b2b0ebc1d90e0ef 64 Pfam PF13980 Uncharacterised protein family (UPF0370) 1 61 6.5E-38 T 12-10-2018 IPR020910 Uncharacterised protein family UPF0370 YPK_1370 1a24278fc87b49941b2b0ebc1d90e0ef 64 Hamap MF_01566 UPF0370 protein YpfN [ypfN]. 1 62 28.52 T 12-10-2018 IPR020910 Uncharacterised protein family UPF0370 YPK_1751 ec84da305deefc660ebbc73afff4f2e5 954 Pfam PF10101 Predicted membrane protein (DUF2339) 173 931 4.8E-140 T 12-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane YPK_1751 ec84da305deefc660ebbc73afff4f2e5 954 PIRSF PIRSF035905 1 941 0.0 T 12-10-2018 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein YPK_0394 8eea7a8b32721e4f83c5efa965ef8488 255 Gene3D G3DSA:1.25.40.590 31 190 5.2E-51 T 12-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YPK_0394 8eea7a8b32721e4f83c5efa965ef8488 255 Pfam PF09850 Type VI secretion system protein DotU 36 238 4.5E-57 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU YPK_0394 8eea7a8b32721e4f83c5efa965ef8488 255 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 34 243 1.4E-61 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 PRINTS PR01806 Virulence factor MviN signature 64 83 2.9E-86 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 PRINTS PR01806 Virulence factor MviN signature 164 188 2.9E-86 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 PRINTS PR01806 Virulence factor MviN signature 388 407 2.9E-86 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 PRINTS PR01806 Virulence factor MviN signature 83 99 2.9E-86 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 PRINTS PR01806 Virulence factor MviN signature 188 209 2.9E-86 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 PRINTS PR01806 Virulence factor MviN signature 440 457 2.9E-86 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 PRINTS PR01806 Virulence factor MviN signature 290 316 2.9E-86 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 34 498 20.045 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 33 538 4.4E-163 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 Pfam PF03023 MviN-like protein 59 508 1.3E-149 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_2158 67d163636ca64556416ab51ccbf0fb8d 542 PIRSF PIRSF002869 29 541 1.8E-175 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ YPK_1502 10ff0c94b2b06b8644d2573e6eb4bd81 188 ProSitePatterns PS00194 Thioredoxin family active site. 77 95 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 YPK_1502 10ff0c94b2b06b8644d2573e6eb4bd81 188 Pfam PF08534 Redoxin 47 169 1.0E-24 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 YPK_1502 10ff0c94b2b06b8644d2573e6eb4bd81 188 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 11 183 2.4E-75 T 12-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 YPK_1502 10ff0c94b2b06b8644d2573e6eb4bd81 188 SUPERFAMILY SSF52833 51 184 3.25E-39 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_1502 10ff0c94b2b06b8644d2573e6eb4bd81 188 Gene3D G3DSA:3.40.30.10 26 186 6.2E-46 T 12-10-2018 YPK_1880 b1dae13725dd8cc7bfb39e4351e61a7e 240 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 26 240 8.7E-95 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YPK_1880 b1dae13725dd8cc7bfb39e4351e61a7e 240 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 210 223 - T 12-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YPK_1880 b1dae13725dd8cc7bfb39e4351e61a7e 240 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 38 240 38.225 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YPK_1880 b1dae13725dd8cc7bfb39e4351e61a7e 240 Gene3D G3DSA:2.30.110.10 42 240 8.6E-77 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 YPK_1880 b1dae13725dd8cc7bfb39e4351e61a7e 240 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 200 240 1.1E-18 T 12-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YPK_1880 b1dae13725dd8cc7bfb39e4351e61a7e 240 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 62 144 4.6E-22 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YPK_1880 b1dae13725dd8cc7bfb39e4351e61a7e 240 PIRSF PIRSF000190 23 240 1.8E-81 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 YPK_1880 b1dae13725dd8cc7bfb39e4351e61a7e 240 SUPERFAMILY SSF50475 43 240 2.06E-66 T 12-10-2018 YPK_2490 9751792c2ef67ad730cc6715efce5009 270 Gene3D G3DSA:1.10.472.150 16 139 7.3E-42 T 12-10-2018 YPK_2490 9751792c2ef67ad730cc6715efce5009 270 Gene3D G3DSA:3.40.390.10 140 262 8.9E-41 T 12-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 YPK_2490 9751792c2ef67ad730cc6715efce5009 270 Pfam PF06167 Glucose-regulated metallo-peptidase M90 12 243 1.3E-63 T 12-10-2018 IPR010384 MtfA family YPK_2490 9751792c2ef67ad730cc6715efce5009 270 Hamap MF_01593 Protein MtfA [mtfA]. 1 265 68.235 T 12-10-2018 IPR010384 MtfA family YPK_2490 9751792c2ef67ad730cc6715efce5009 270 SUPERFAMILY SSF55486 34 245 1.54E-44 T 12-10-2018 YPK_1759 7281f707051d42cbc207aac299893beb 214 PIRSF PIRSF002884 1 214 1.5E-87 T 12-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 YPK_1759 7281f707051d42cbc207aac299893beb 214 SUPERFAMILY SSF75708 13 213 2.35E-65 T 12-10-2018 YPK_1759 7281f707051d42cbc207aac299893beb 214 Pfam PF04344 Chemotaxis phosphatase, CheZ 16 214 1.0E-75 T 12-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 YPK_1759 7281f707051d42cbc207aac299893beb 214 Gene3D G3DSA:1.20.5.590 6 34 5.7E-12 T 12-10-2018 YPK_1759 7281f707051d42cbc207aac299893beb 214 Gene3D G3DSA:1.10.287.500 35 168 2.6E-51 T 12-10-2018 YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 321 336 7.4E-5 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 68 88 7.4E-5 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 Gene3D G3DSA:1.10.287.470 90 149 2.5E-71 T 12-10-2018 YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 SUPERFAMILY SSF111369 48 206 5.89E-24 T 12-10-2018 YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 Gene3D G3DSA:2.40.420.20 269 350 2.5E-71 T 12-10-2018 YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 32 354 1.3E-99 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 Gene3D G3DSA:2.40.30.170 44 268 2.5E-71 T 12-10-2018 YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 248 3.7E-14 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPK_3643 eb67a79195de0f6ef92f78adce02ee60 360 Gene3D G3DSA:2.40.50.100 56 188 2.5E-71 T 12-10-2018 YPK_3537 758b3656461bd525d63cf76485fada09 476 Pfam PF00330 Aconitase family (aconitate hydratase) 14 463 1.4E-161 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 201 214 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 125 138 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 88 101 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 114 122 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 215 228 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 405 418 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 292 306 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 139 154 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 PRINTS PR00415 Aconitase family signature 349 360 3.3E-50 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 Gene3D G3DSA:3.30.499.20 10 292 2.8E-100 T 12-10-2018 YPK_3537 758b3656461bd525d63cf76485fada09 476 ProSitePatterns PS01244 Aconitase family signature 2. 405 418 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 Gene3D G3DSA:3.30.499.10 331 476 2.0E-51 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 8 471 1.6E-266 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 7 472 61.757 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 SUPERFAMILY SSF53732 7 472 1.31E-168 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 YPK_3537 758b3656461bd525d63cf76485fada09 476 ProSitePatterns PS00450 Aconitase family signature 1. 345 361 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 371 9.0E-26 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 Gene3D G3DSA:3.30.310.50 374 456 1.2E-25 T 12-10-2018 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 SUPERFAMILY SSF55957 373 456 3.01E-18 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 Gene3D G3DSA:3.40.120.10 256 372 6.1E-34 T 12-10-2018 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 454 5.7E-11 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 SUPERFAMILY SSF53738 4 176 7.95E-37 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 SUPERFAMILY SSF53738 153 261 5.89E-27 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 132 2.8E-30 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 1.6E-29 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 1.6E-29 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 1.6E-29 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 1.6E-29 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 SUPERFAMILY SSF53738 263 368 5.89E-33 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 Gene3D G3DSA:3.40.120.10 3 145 7.1E-50 T 12-10-2018 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 258 4.9E-20 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 YPK_3178 0a13abd2d598ad6f97f8aa797486a0e4 457 Gene3D G3DSA:3.40.120.10 172 254 3.3E-29 T 12-10-2018 YPK_1677 95f396f11e341c853768b3c9962b5727 1216 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1178 1213 6.9E-15 T 12-10-2018 IPR021968 Polyribonucleotide phosphorylase C-terminal YPK_1677 95f396f11e341c853768b3c9962b5727 1216 SUPERFAMILY SSF50249 40 124 8.88E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1677 95f396f11e341c853768b3c9962b5727 1216 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 1.1E-169 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 YPK_1677 95f396f11e341c853768b3c9962b5727 1216 Pfam PF00575 S1 RNA binding domain 36 118 1.5E-16 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_1677 95f396f11e341c853768b3c9962b5727 1216 SMART SM00316 37 119 8.7E-13 T 12-10-2018 IPR022967 RNA-binding domain, S1 YPK_1677 95f396f11e341c853768b3c9962b5727 1216 Gene3D G3DSA:3.40.1260.20 401 510 4.1E-42 T 12-10-2018 YPK_1677 95f396f11e341c853768b3c9962b5727 1216 Hamap MF_00970 Ribonuclease E [rne]. 1 1202 41.525 T 12-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 YPK_1677 95f396f11e341c853768b3c9962b5727 1216 Pfam PF10150 Ribonuclease E/G family 121 391 7.7E-92 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 YPK_1677 95f396f11e341c853768b3c9962b5727 1216 Gene3D G3DSA:2.40.50.140 32 125 7.7E-34 T 12-10-2018 YPK_2990 5834de8a9663be676c78792af08f6c8c 175 PIRSF PIRSF038996 1 172 3.0E-71 T 12-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 YPK_2990 5834de8a9663be676c78792af08f6c8c 175 Pfam PF00258 Flavodoxin 6 160 4.5E-33 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YPK_2990 5834de8a9663be676c78792af08f6c8c 175 SUPERFAMILY SSF52218 4 170 4.6E-54 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_2990 5834de8a9663be676c78792af08f6c8c 175 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 5.7E-77 T 12-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 YPK_2990 5834de8a9663be676c78792af08f6c8c 175 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 12-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 YPK_2990 5834de8a9663be676c78792af08f6c8c 175 Gene3D G3DSA:3.40.50.360 2 175 3.2E-59 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_0229 ef69a3553b4753b779e7a7a6afa8ff8c 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YPK_0229 ef69a3553b4753b779e7a7a6afa8ff8c 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 5.9E-99 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YPK_0229 ef69a3553b4753b779e7a7a6afa8ff8c 225 SUPERFAMILY SSF51366 3 218 1.57E-77 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YPK_0229 ef69a3553b4753b779e7a7a6afa8ff8c 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YPK_0229 ef69a3553b4753b779e7a7a6afa8ff8c 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 2.4E-93 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YPK_0229 ef69a3553b4753b779e7a7a6afa8ff8c 225 Gene3D G3DSA:3.20.20.70 5 221 1.3E-84 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0229 ef69a3553b4753b779e7a7a6afa8ff8c 225 PIRSF PIRSF001461 1 225 2.4E-107 T 12-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 YPK_0984 26f0fe8f88e5bb7e13c26ccfcae50183 535 Pfam PF00884 Sulfatase 34 384 2.6E-73 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YPK_0984 26f0fe8f88e5bb7e13c26ccfcae50183 535 Gene3D G3DSA:3.40.720.10 30 429 3.1E-98 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_0984 26f0fe8f88e5bb7e13c26ccfcae50183 535 Gene3D G3DSA:3.30.1120.10 450 517 5.8E-12 T 12-10-2018 YPK_0984 26f0fe8f88e5bb7e13c26ccfcae50183 535 SUPERFAMILY SSF53649 32 519 3.05E-108 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_0984 26f0fe8f88e5bb7e13c26ccfcae50183 535 ProSitePatterns PS00149 Sulfatases signature 2. 151 161 - T 12-10-2018 IPR024607 Sulfatase, conserved site YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 Pfam PF00005 ABC transporter 280 433 2.3E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 Gene3D G3DSA:3.40.50.300 6 259 2.4E-52 T 12-10-2018 YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 Pfam PF00005 ABC transporter 30 180 1.9E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 SUPERFAMILY SSF52540 13 240 2.34E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 SMART SM00382 39 228 3.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 SMART SM00382 288 482 1.6E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 Gene3D G3DSA:3.40.50.300 274 500 3.8E-45 T 12-10-2018 YPK_0966 29a2e1bf572cdfc3533ffae96a679d17 502 SUPERFAMILY SSF52540 279 485 4.47E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0681 b856ee27ebae0dd735587547a9c1d392 291 Pfam PF00482 Type II secretion system (T2SS), protein F 127 247 1.6E-17 T 12-10-2018 IPR018076 Type II secretion system F domain YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 Gene3D G3DSA:2.40.50.140 2 70 6.4E-31 T 12-10-2018 YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 43 61 1.9E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 7 22 1.9E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 28 37 1.9E-17 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 SUPERFAMILY SSF50249 2 69 1.43E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 SMART SM00357 6 70 1.1E-30 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 12-10-2018 IPR019844 Cold-shock conserved site YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PIRSF PIRSF002599 1 70 1.6E-26 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_1740 9ada91f7eb5af6e6a8aa0dfe417ef213 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 3.4E-33 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_0402 1e50d7a463af7f1cc9ea0facfaab91c6 152 Gene3D G3DSA:3.40.1000.10 5 151 1.7E-38 T 12-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPK_0402 1e50d7a463af7f1cc9ea0facfaab91c6 152 SUPERFAMILY SSF55724 6 146 3.98E-46 T 12-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPK_0402 1e50d7a463af7f1cc9ea0facfaab91c6 152 Pfam PF08786 DcrB 13 141 2.4E-39 T 12-10-2018 IPR014894 Protein DcrB YPK_3544 3db649e67330167345c0e6e2f22aa3b1 236 Gene3D G3DSA:3.40.50.300 2 228 9.7E-62 T 12-10-2018 YPK_3544 3db649e67330167345c0e6e2f22aa3b1 236 Pfam PF00005 ABC transporter 19 157 9.0E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3544 3db649e67330167345c0e6e2f22aa3b1 236 SMART SM00382 24 209 1.2E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3544 3db649e67330167345c0e6e2f22aa3b1 236 SUPERFAMILY SSF52540 1 220 2.92E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3544 3db649e67330167345c0e6e2f22aa3b1 236 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3544 3db649e67330167345c0e6e2f22aa3b1 236 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 210 4.1E-102 T 12-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 Gene3D G3DSA:3.20.20.140 134 569 6.8E-277 T 12-10-2018 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 ProSitePatterns PS00145 Urease active site. 322 338 - T 12-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 ProSitePatterns PS01120 Urease nickel ligands signature. 132 145 - T 12-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 SUPERFAMILY SSF51556 135 571 5.11E-178 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 Pfam PF01979 Amidohydrolase family 130 459 8.0E-70 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 SUPERFAMILY SSF51338 2 183 4.54E-56 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 571 2.5E-283 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 124 9.4E-51 T 12-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 Gene3D G3DSA:2.30.40.10 4 485 6.8E-277 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 432 445 5.2E-27 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 300 317 5.2E-27 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 406 421 5.2E-27 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 339 355 5.2E-27 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_1133 0e06d64da01f800eae2b85a8f3155752 572 Hamap MF_01953 Urease subunit alpha [ureC]. 2 572 53.489 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 YPK_0989 9b6eab167574dbcea9942641efcea690 146 Gene3D G3DSA:3.40.50.510 1 144 2.7E-36 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 YPK_0989 9b6eab167574dbcea9942641efcea690 146 SUPERFAMILY SSF53062 1 130 1.31E-35 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 YPK_0989 9b6eab167574dbcea9942641efcea690 146 Pfam PF03610 PTS system fructose IIA component 3 115 7.1E-28 T 12-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 YPK_2135 0dc32e079400ce63fc660b38fa0790c1 301 Pfam PF01380 SIS domain 136 264 3.1E-25 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_2135 0dc32e079400ce63fc660b38fa0790c1 301 Pfam PF01418 Helix-turn-helix domain, rpiR family 13 88 2.6E-29 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YPK_2135 0dc32e079400ce63fc660b38fa0790c1 301 Gene3D G3DSA:3.40.50.10490 107 289 4.4E-43 T 12-10-2018 YPK_2135 0dc32e079400ce63fc660b38fa0790c1 301 SUPERFAMILY SSF53697 106 289 1.15E-42 T 12-10-2018 YPK_2135 0dc32e079400ce63fc660b38fa0790c1 301 SUPERFAMILY SSF46689 12 92 3.58E-21 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2135 0dc32e079400ce63fc660b38fa0790c1 301 Gene3D G3DSA:1.10.10.10 10 91 3.7E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2181 4390314e8cfb23372aa9795f9766cf3a 207 Gene3D G3DSA:2.50.20.10 30 207 2.2E-60 T 12-10-2018 YPK_2181 4390314e8cfb23372aa9795f9766cf3a 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 29.874 T 12-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 YPK_2181 4390314e8cfb23372aa9795f9766cf3a 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 8 205 1.8E-72 T 12-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 YPK_2181 4390314e8cfb23372aa9795f9766cf3a 207 SUPERFAMILY SSF89392 34 206 1.26E-55 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPK_2181 4390314e8cfb23372aa9795f9766cf3a 207 Pfam PF03550 Outer membrane lipoprotein LolB 51 204 3.3E-47 T 12-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 YPK_3179 39d05a84cbbda5654e3ff810ec3ee835 319 Gene3D G3DSA:3.40.50.720 1 317 3.3E-49 T 12-10-2018 YPK_3179 39d05a84cbbda5654e3ff810ec3ee835 319 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 211 2.5E-28 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_3179 39d05a84cbbda5654e3ff810ec3ee835 319 SUPERFAMILY SSF51735 1 312 1.99E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0086 3e5c8e2d51bc06913f50d1a0300324c8 587 Pfam PF08479 POTRA domain, ShlB-type 90 165 1.7E-16 T 12-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_0086 3e5c8e2d51bc06913f50d1a0300324c8 587 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 227 551 6.7E-72 T 12-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YPK_0086 3e5c8e2d51bc06913f50d1a0300324c8 587 Pfam PF17287 POTRA domain 166 218 4.6E-15 T 12-10-2018 IPR035251 ShlB, POTRA domain YPK_0086 3e5c8e2d51bc06913f50d1a0300324c8 587 Gene3D G3DSA:2.40.160.50 196 587 4.4E-63 T 12-10-2018 YPK_0086 3e5c8e2d51bc06913f50d1a0300324c8 587 PIRSF PIRSF029745 3 587 4.9E-183 T 12-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 YPK_3197 6140810bea07c4c4c7ed660db78322e5 110 SUPERFAMILY SSF82607 11 104 1.57E-34 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YPK_3197 6140810bea07c4c4c7ed660db78322e5 110 PIRSF PIRSF004555 3 110 7.8E-39 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family YPK_3197 6140810bea07c4c4c7ed660db78322e5 110 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 99 22.965 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family YPK_3197 6140810bea07c4c4c7ed660db78322e5 110 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 106 3.4E-41 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family YPK_3197 6140810bea07c4c4c7ed660db78322e5 110 Pfam PF02575 YbaB/EbfC DNA-binding family 11 100 4.3E-35 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family YPK_3197 6140810bea07c4c4c7ed660db78322e5 110 Gene3D G3DSA:3.30.1310.10 1 110 7.6E-47 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily YPK_2451 27908e4e45cf0d7baf78d06042693a46 454 Pfam PF03315 Serine dehydratase beta chain 3 155 1.3E-55 T 12-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 YPK_2451 27908e4e45cf0d7baf78d06042693a46 454 Pfam PF03313 Serine dehydratase alpha chain 184 448 2.4E-95 T 12-10-2018 IPR005130 Serine dehydratase-like, alpha subunit YPK_2451 27908e4e45cf0d7baf78d06042693a46 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 1.4E-223 T 12-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 YPK_2451 27908e4e45cf0d7baf78d06042693a46 454 SUPERFAMILY SSF143548 16 157 2.33E-45 T 12-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 YPK_2451 27908e4e45cf0d7baf78d06042693a46 454 Gene3D G3DSA:3.30.1330.90 10 159 1.4E-51 T 12-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 YPK_0416 717439aea833bd4ce27779badafdbf3b 167 Gene3D G3DSA:3.40.1650.10 3 131 4.1E-25 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YPK_0416 717439aea833bd4ce27779badafdbf3b 167 Pfam PF05025 RbsD / FucU transport protein family 1 130 2.0E-30 T 12-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YPK_0416 717439aea833bd4ce27779badafdbf3b 167 SUPERFAMILY SSF102546 1 129 7.19E-31 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YPK_1984 d2e1398760e0c3d3a6668ea3c2a21c61 324 Hamap MF_00483 DNA replication terminus site-binding protein [tus]. 14 322 44.126 T 12-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 YPK_1984 d2e1398760e0c3d3a6668ea3c2a21c61 324 Gene3D G3DSA:3.30.54.10 187 319 4.0E-122 T 12-10-2018 YPK_1984 d2e1398760e0c3d3a6668ea3c2a21c61 324 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 22 319 1.9E-137 T 12-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 YPK_1984 d2e1398760e0c3d3a6668ea3c2a21c61 324 Gene3D G3DSA:3.50.14.10 27 294 4.0E-122 T 12-10-2018 IPR036381 Replication terminator Tus, domain 1 GO:0003677|GO:0005737|GO:0006274 YPK_1984 d2e1398760e0c3d3a6668ea3c2a21c61 324 SUPERFAMILY SSF56596 18 320 9.15E-122 T 12-10-2018 IPR036384 Replication terminator Tus superfamily GO:0003677|GO:0005737|GO:0006274 YPK_1984 d2e1398760e0c3d3a6668ea3c2a21c61 324 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 23 321 1.6E-170 T 12-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 YPK_1059 fdf5ba87c49bac44ab534c5ae1e0470c 110 Pfam PF04287 tRNA pseudouridine synthase C 7 104 8.3E-35 T 12-10-2018 IPR023376 YqcC-like domain YPK_1059 fdf5ba87c49bac44ab534c5ae1e0470c 110 Gene3D G3DSA:1.20.1440.40 1 106 3.2E-34 T 12-10-2018 IPR036814 YqcC-like superfamily YPK_1059 fdf5ba87c49bac44ab534c5ae1e0470c 110 SUPERFAMILY SSF158452 1 108 9.29E-39 T 12-10-2018 IPR036814 YqcC-like superfamily YPK_1059 fdf5ba87c49bac44ab534c5ae1e0470c 110 PIRSF PIRSF006257 1 109 1.4E-44 T 12-10-2018 IPR007384 Protein of unknown function UCP006257 YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 SMART SM00532 36 435 3.4E-42 T 12-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 SUPERFAMILY SSF50249 317 397 4.28E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 SUPERFAMILY SSF56091 32 314 7.34E-68 T 12-10-2018 YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 Gene3D G3DSA:3.30.470.90 97 315 4.7E-29 T 12-10-2018 YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 SUPERFAMILY SSF47781 397 562 5.34E-32 T 12-10-2018 IPR010994 RuvA domain 2-like YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 Hamap MF_01587 DNA ligase B [ligB]. 5 563 54.067 T 12-10-2018 IPR020923 DNA ligase B GO:0003911|GO:0006259 YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 Gene3D G3DSA:2.40.50.140 316 388 1.5E-9 T 12-10-2018 YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 320 394 2.3E-14 T 12-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 125 315 6.9E-18 T 12-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 YPK_4175 2ac2bab274a8c6ea6035a922ebf2f58f 567 Gene3D G3DSA:1.10.287.610 36 80 5.1E-5 T 12-10-2018 YPK_0986 82915387673a3ff300cbdb19c951e0d1 352 Gene3D G3DSA:1.50.10.10 7 352 1.1E-105 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 YPK_0986 82915387673a3ff300cbdb19c951e0d1 352 SUPERFAMILY SSF48208 36 351 1.59E-52 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 YPK_0986 82915387673a3ff300cbdb19c951e0d1 352 Pfam PF07470 Glycosyl Hydrolase Family 88 41 351 2.7E-72 T 12-10-2018 IPR010905 Glycosyl hydrolase, family 88 YPK_0471 836999ff4e5be1bbe79d77d0f0353eac 289 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 12-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site YPK_0471 836999ff4e5be1bbe79d77d0f0353eac 289 Gene3D G3DSA:3.60.110.10 1 273 1.7E-85 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_0471 836999ff4e5be1bbe79d77d0f0353eac 289 SUPERFAMILY SSF56317 2 267 2.09E-72 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_0471 836999ff4e5be1bbe79d77d0f0353eac 289 Pfam PF00795 Carbon-nitrogen hydrolase 6 241 6.7E-48 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YPK_2684 9ff00a98206223fc4824a56760b99352 202 Gene3D G3DSA:2.50.20.10 20 202 8.9E-54 T 12-10-2018 YPK_2684 9ff00a98206223fc4824a56760b99352 202 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 202 1.3E-97 T 12-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 YPK_2684 9ff00a98206223fc4824a56760b99352 202 SUPERFAMILY SSF89392 23 202 9.02E-56 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX YPK_2684 9ff00a98206223fc4824a56760b99352 202 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 10 201 32.008 T 12-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 YPK_2684 9ff00a98206223fc4824a56760b99352 202 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 32 191 8.4E-58 T 12-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like YPK_4007 8cfb3555bed9474f9f0a2a39cb890650 720 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 718 0.0 T 12-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 YPK_4007 8cfb3555bed9474f9f0a2a39cb890650 720 SUPERFAMILY SSF52540 4 642 7.01E-182 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4007 8cfb3555bed9474f9f0a2a39cb890650 720 Gene3D G3DSA:1.10.486.10 382 538 4.7E-138 T 12-10-2018 YPK_4007 8cfb3555bed9474f9f0a2a39cb890650 720 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 4.0E-74 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 YPK_4007 8cfb3555bed9474f9f0a2a39cb890650 720 Gene3D G3DSA:3.40.50.300 281 636 4.7E-138 T 12-10-2018 YPK_4007 8cfb3555bed9474f9f0a2a39cb890650 720 Gene3D G3DSA:3.40.50.300 10 274 5.0E-105 T 12-10-2018 YPK_4007 8cfb3555bed9474f9f0a2a39cb890650 720 Gene3D G3DSA:1.10.10.160 114 187 5.0E-105 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily YPK_4007 8cfb3555bed9474f9f0a2a39cb890650 720 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 2.1E-75 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 Pfam PF14697 4Fe-4S dicluster domain 110 164 3.0E-17 T 12-10-2018 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 187 1.5E-85 T 12-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 Gene3D G3DSA:3.20.20.20 37 99 1.5E-12 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 Gene3D G3DSA:3.30.70.20 142 185 4.6E-7 T 12-10-2018 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 Pfam PF04060 Putative Fe-S cluster 44 76 2.2E-14 T 12-10-2018 IPR007202 4Fe-4S domain GO:0051536 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 PIRSF PIRSF005784 3 190 7.4E-86 T 12-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 SUPERFAMILY SSF54862 38 176 1.78E-29 T 12-10-2018 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 169 25.456 T 12-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 YPK_2007 72f8dcab78943cd7d2ebfdd9b9586819 207 Gene3D G3DSA:3.30.70.20 100 141 1.4E-7 T 12-10-2018 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 SUPERFAMILY SSF54534 81 157 1.28E-24 T 12-10-2018 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.737 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 7.5E-32 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 1.7E-60 T 12-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 Gene3D G3DSA:3.10.50.30 76 158 5.4E-33 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 Gene3D G3DSA:1.10.287.180 1 75 5.4E-33 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 PIRSF PIRSF006092 1 158 1.9E-55 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 9.8E-29 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 YPK_3739 d67d2b4cbef4b2723c7a69b2454f9a00 158 SUPERFAMILY SSF46557 3 78 4.05E-29 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 YPK_3163 4a71d9f513d09238ebd59cd46707c02e 149 SUPERFAMILY SSF141322 90 147 2.88E-5 T 12-10-2018 YPK_3163 4a71d9f513d09238ebd59cd46707c02e 149 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 146 4.5E-24 T 12-10-2018 IPR002810 NfeD-like, C-terminal domain YPK_3163 4a71d9f513d09238ebd59cd46707c02e 149 Gene3D G3DSA:2.40.50.140 82 149 4.3E-10 T 12-10-2018 YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 SUPERFAMILY SSF159871 109 179 3.4E-17 T 12-10-2018 IPR036275 YdgH-like superfamily YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 SUPERFAMILY SSF159871 3 94 3.92E-22 T 12-10-2018 IPR036275 YdgH-like superfamily YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 PIRSF PIRSF014774 1 317 4.2E-184 T 12-10-2018 IPR025539 YdgH protein YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 Gene3D G3DSA:3.30.1660.10 107 176 2.5E-23 T 12-10-2018 IPR025543 Dodecin-like YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 Gene3D G3DSA:3.30.1660.10 245 317 6.8E-29 T 12-10-2018 IPR025543 Dodecin-like YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 SUPERFAMILY SSF159871 241 317 1.44E-19 T 12-10-2018 IPR036275 YdgH-like superfamily YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 Gene3D G3DSA:3.30.1660.10 22 91 1.6E-25 T 12-10-2018 IPR025543 Dodecin-like YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 Pfam PF07338 Protein of unknown function (DUF1471) 120 176 3.3E-19 T 12-10-2018 IPR010854 Domain of unknown function DUF1471 YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 Pfam PF07338 Protein of unknown function (DUF1471) 36 91 4.1E-20 T 12-10-2018 IPR010854 Domain of unknown function DUF1471 YPK_1940 496abb69702272c2ab8b7312e2dafcc2 317 Pfam PF07338 Protein of unknown function (DUF1471) 261 317 5.9E-21 T 12-10-2018 IPR010854 Domain of unknown function DUF1471 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 SUPERFAMILY SSF52343 106 227 1.57E-24 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 SUPERFAMILY SSF54292 216 319 1.31E-22 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 Hamap MF_02098 Carnitine monooxygenase reductase subunit. 7 321 85.304 T 12-10-2018 IPR039003 Carnitine monooxygenase reductase subunit GO:0009437 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 Gene3D G3DSA:3.40.50.80 106 224 5.9E-23 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 Gene3D G3DSA:2.40.30.10 2 105 8.6E-24 T 12-10-2018 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 Gene3D G3DSA:3.10.20.30 225 321 7.5E-21 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 241 312 3.2E-10 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 Pfam PF00970 Oxidoreductase FAD-binding domain 9 103 2.7E-7 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 Pfam PF00175 Oxidoreductase NAD-binding domain 117 206 4.7E-5 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 94 108 1.1E-25 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 193 201 1.1E-25 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 116 135 1.1E-25 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 31 41 1.1E-25 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 80 94 1.1E-25 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 141 150 1.1E-25 T 12-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 270 278 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 YPK_1620 5f491cddb9cfc696976375726b6ba0ff 321 SUPERFAMILY SSF63380 3 104 1.51E-22 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel YPK_2731 75c82b9022afd1236d35c1e9dbb02cb8 161 Pfam PF10722 Putative bacterial sensory transduction regulator 9 132 1.4E-14 T 12-10-2018 IPR019660 Putative sensory transduction regulator YbjN YPK_3406 59f94d016a129d10c640a1c5a064980e 261 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 5 249 1.5E-90 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_3406 59f94d016a129d10c640a1c5a064980e 261 SUPERFAMILY SSF55920 6 258 1.13E-87 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like YPK_3406 59f94d016a129d10c640a1c5a064980e 261 Pfam PF00557 Metallopeptidase family M24 14 242 8.5E-51 T 12-10-2018 IPR000994 Peptidase M24 YPK_3406 59f94d016a129d10c640a1c5a064980e 261 Hamap MF_01974 Methionine aminopeptidase [map]. 4 251 39.562 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_3406 59f94d016a129d10c640a1c5a064980e 261 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_3406 59f94d016a129d10c640a1c5a064980e 261 Gene3D G3DSA:3.90.230.10 2 254 8.9E-105 T 12-10-2018 YPK_3406 59f94d016a129d10c640a1c5a064980e 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 1.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_3406 59f94d016a129d10c640a1c5a064980e 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 70 83 1.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_3406 59f94d016a129d10c640a1c5a064980e 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 1.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_3406 59f94d016a129d10c640a1c5a064980e 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 1.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_3459 44fdbde2ee95da47c452a8e951ed2be5 426 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 1.4E-203 T 12-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 YPK_3459 44fdbde2ee95da47c452a8e951ed2be5 426 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 107.034 T 12-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 YPK_3459 44fdbde2ee95da47c452a8e951ed2be5 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_3459 44fdbde2ee95da47c452a8e951ed2be5 426 Pfam PF00202 Aminotransferase class-III 32 396 5.9E-79 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 YPK_3459 44fdbde2ee95da47c452a8e951ed2be5 426 Gene3D G3DSA:3.90.1150.10 7 419 8.4E-181 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_3459 44fdbde2ee95da47c452a8e951ed2be5 426 Gene3D G3DSA:3.40.640.10 69 317 8.4E-181 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_3459 44fdbde2ee95da47c452a8e951ed2be5 426 SUPERFAMILY SSF53383 2 425 2.45E-137 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0575 b19b3e68b8a13126f9c37813bd22f789 1077 Pfam PF13332 Haemagluttinin repeat 67 171 6.6E-7 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_0575 b19b3e68b8a13126f9c37813bd22f789 1077 Pfam PF13332 Haemagluttinin repeat 214 384 1.6E-41 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_0575 b19b3e68b8a13126f9c37813bd22f789 1077 Pfam PF04829 Pre-toxin domain with VENN motif 738 787 2.3E-21 T 12-10-2018 IPR006914 VENN motif-containing domain YPK_0575 b19b3e68b8a13126f9c37813bd22f789 1077 Gene3D G3DSA:3.40.1350.110 928 1077 3.8E-58 T 12-10-2018 YPK_2476 a25aa5c45c6d1e1815c5c7bec405e1f3 202 Gene3D G3DSA:2.40.160.20 43 202 3.3E-71 T 12-10-2018 YPK_2476 a25aa5c45c6d1e1815c5c7bec405e1f3 202 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 54 190 3.0E-71 T 12-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPK_2476 a25aa5c45c6d1e1815c5c7bec405e1f3 202 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 3 202 42.746 T 12-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPK_2476 a25aa5c45c6d1e1815c5c7bec405e1f3 202 SUPERFAMILY SSF56925 44 202 1.26E-80 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_2476 a25aa5c45c6d1e1815c5c7bec405e1f3 202 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 54 199 6.2E-69 T 12-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 SUPERFAMILY SSF50249 171 556 1.48E-115 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 Pfam PF08206 Ribonuclease B OB domain 24 80 5.9E-19 T 12-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 SMART SM00955 189 517 2.6E-124 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 12-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 SMART SM00357 23 79 1.5E-12 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 12-10-2018 IPR022966 Ribonuclease II/R, conserved site YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 Pfam PF00575 S1 RNA binding domain 560 639 9.9E-11 T 12-10-2018 IPR003029 S1 domain GO:0003676 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 Pfam PF00773 RNB domain 189 516 2.7E-86 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 SUPERFAMILY SSF50249 8 80 1.52E-15 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 SUPERFAMILY SSF50249 83 171 1.15E-30 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 45.202 T 12-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 Gene3D G3DSA:2.40.50.640 83 155 1.2E-29 T 12-10-2018 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 Gene3D G3DSA:2.40.50.140 558 644 5.2E-36 T 12-10-2018 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 643 2.2E-223 T 12-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 Gene3D G3DSA:2.40.50.140 1 82 1.7E-30 T 12-10-2018 YPK_2016 d505a8ef6900c78e06e9eb2678445a9f 644 SUPERFAMILY SSF50249 560 643 4.05E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_1135 49d05a4f10de9312d27b4549ed70c4bf 228 Pfam PF01730 UreF 37 185 8.4E-23 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 YPK_1135 49d05a4f10de9312d27b4549ed70c4bf 228 Gene3D G3DSA:1.10.4190.10 2 204 3.0E-42 T 12-10-2018 IPR038277 UreF domain superfamily YPK_1135 49d05a4f10de9312d27b4549ed70c4bf 228 PIRSF PIRSF009467 2 228 5.0E-60 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 YPK_1135 49d05a4f10de9312d27b4549ed70c4bf 228 Hamap MF_01385 Urease accessory protein UreF [ureF]. 5 228 22.141 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 YPK_1899 ebae9848eb5e44f37b4babba29f71369 353 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 57 342 9.5E-134 T 12-10-2018 IPR006507 Uncharacterised protein family UPF0283 YPK_1899 ebae9848eb5e44f37b4babba29f71369 353 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 348 39.45 T 12-10-2018 IPR006507 Uncharacterised protein family UPF0283 YPK_1899 ebae9848eb5e44f37b4babba29f71369 353 Pfam PF05128 Domain of unknown function (DUF697) 183 342 3.5E-57 T 12-10-2018 IPR021147 Protein of unknown function DUF697 YPK_3779 595794c186337972b3cc7ca01042129e 246 Gene3D G3DSA:3.10.450.350 150 244 4.0E-14 T 12-10-2018 YPK_3779 595794c186337972b3cc7ca01042129e 246 Pfam PF04225 Opacity-associated protein A LysM-like domain 161 245 3.8E-38 T 12-10-2018 IPR007340 Opacity-associated protein A YPK_3779 595794c186337972b3cc7ca01042129e 246 Pfam PF08525 Opacity-associated protein A N-terminal motif 89 115 7.0E-7 T 12-10-2018 IPR013731 Opacity-associated protein A, N-terminal YPK_0654 ce0209c5fe27ec9c7a9408ce6561b1ad 464 Gene3D G3DSA:1.20.1600.10 23 447 2.6E-144 T 12-10-2018 YPK_0654 ce0209c5fe27ec9c7a9408ce6561b1ad 464 SUPERFAMILY SSF56954 25 441 2.35E-93 T 12-10-2018 YPK_0654 ce0209c5fe27ec9c7a9408ce6561b1ad 464 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 440 9.6E-130 T 12-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 YPK_0654 ce0209c5fe27ec9c7a9408ce6561b1ad 464 Pfam PF02321 Outer membrane efflux protein 25 210 1.3E-27 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YPK_0654 ce0209c5fe27ec9c7a9408ce6561b1ad 464 Pfam PF02321 Outer membrane efflux protein 233 424 8.1E-34 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YPK_2862 31df04f50a487166b0619448f5989eca 278 Gene3D G3DSA:1.10.3720.10 66 266 1.2E-26 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2862 31df04f50a487166b0619448f5989eca 278 SUPERFAMILY SSF161098 69 259 6.41E-32 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2862 31df04f50a487166b0619448f5989eca 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 265 5.9E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 Gene3D G3DSA:3.40.1450.10 79 313 1.0E-215 T 12-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 513 50.001 T 12-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 Gene3D G3DSA:3.40.720.10 7 511 1.0E-215 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 Pfam PF01676 Metalloenzyme superfamily 6 501 2.5E-81 T 12-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 PIRSF PIRSF001492 1 515 3.2E-205 T 12-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 85 300 1.4E-82 T 12-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 SUPERFAMILY SSF64158 79 311 9.94E-86 T 12-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 SUPERFAMILY SSF53649 5 511 6.94E-74 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_4141 4f6748cb20d6c82e8be7e13c1dd84c07 515 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 512 2.7E-238 T 12-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 YPK_3505 f2ed23e8ed18bc2d47cc3826de5af644 68 Pfam PF03884 DNA gyrase inhibitor YacG 8 58 1.2E-24 T 12-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 YPK_3505 f2ed23e8ed18bc2d47cc3826de5af644 68 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 4 60 18.968 T 12-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 YPK_3505 f2ed23e8ed18bc2d47cc3826de5af644 68 Gene3D G3DSA:3.30.50.10 2 65 6.0E-26 T 12-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 YPK_3505 f2ed23e8ed18bc2d47cc3826de5af644 68 SUPERFAMILY SSF57716 5 63 1.71E-21 T 12-10-2018 YPK_0643 a868bf7e31aff251648b6f4f3cb87080 435 Pfam PF01928 CYTH domain 4 196 3.7E-30 T 12-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 YPK_0643 a868bf7e31aff251648b6f4f3cb87080 435 Gene3D G3DSA:2.40.320.10 1 200 1.1E-38 T 12-10-2018 YPK_0643 a868bf7e31aff251648b6f4f3cb87080 435 SUPERFAMILY SSF55154 1 218 1.8E-55 T 12-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 YPK_0643 a868bf7e31aff251648b6f4f3cb87080 435 SMART SM01118 2 202 9.8E-42 T 12-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 YPK_1038 4a453af15485f010da579c7d4fecad4d 202 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 20 39 0.0013 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1038 4a453af15485f010da579c7d4fecad4d 202 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 20 40 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1038 4a453af15485f010da579c7d4fecad4d 202 PIRSF PIRSF004525 6 202 3.5E-74 T 12-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 242 259 8.0E-65 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 8.0E-65 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 96 118 8.0E-65 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 8.0E-65 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 8.0E-65 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 282 301 8.0E-65 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 326 343 4.9E-18 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 4.9E-18 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 4.9E-18 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 236 248 4.9E-18 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 4.9E-18 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 SUPERFAMILY SSF56935 22 371 1.28E-79 T 12-10-2018 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 326 342 - T 12-10-2018 IPR013793 Porin, Gram-negative type, conserved site YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 Pfam PF00267 Gram-negative porin 27 371 6.0E-144 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2857 54bfbdf1c48f66eb256e729ef4375cd1 371 Gene3D G3DSA:2.40.160.10 22 371 2.6E-149 T 12-10-2018 IPR023614 Porin domain superfamily YPK_0493 19e4733791a7e5190cb5047a5d1557de 136 Hamap MF_00954 Regulator of nucleoside diphosphate kinase [rnk]. 1 136 43.104 T 12-10-2018 IPR028625 Regulator of nucleoside diphosphate kinase GO:0070063 YPK_0493 19e4733791a7e5190cb5047a5d1557de 136 SUPERFAMILY SSF54534 49 126 6.15E-18 T 12-10-2018 YPK_0493 19e4733791a7e5190cb5047a5d1557de 136 Pfam PF14760 Rnk N-terminus 4 43 2.0E-12 T 12-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain YPK_0493 19e4733791a7e5190cb5047a5d1557de 136 PIRSF PIRSF006092 28 128 7.3E-23 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 YPK_0493 19e4733791a7e5190cb5047a5d1557de 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 124 9.6E-18 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 YPK_0493 19e4733791a7e5190cb5047a5d1557de 136 Gene3D G3DSA:1.10.286.20 1 44 1.0E-25 T 12-10-2018 YPK_0493 19e4733791a7e5190cb5047a5d1557de 136 Gene3D G3DSA:3.10.50.30 45 136 3.0E-30 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 YPK_0178 0cc64ad755dab935783dcf11369c4116 715 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 22 704 0.0 T 12-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 YPK_0178 0cc64ad755dab935783dcf11369c4116 715 Pfam PF07095 Intracellular growth attenuator protein IgaA 1 710 0.0 T 12-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 YPK_3082 3256ca64bb06b6c706e56de6736bfb27 210 SUPERFAMILY SSF69593 5 184 8.37E-35 T 12-10-2018 YPK_3082 3256ca64bb06b6c706e56de6736bfb27 210 SMART SM00563 38 157 6.4E-27 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YPK_3082 3256ca64bb06b6c706e56de6736bfb27 210 Pfam PF01553 Acyltransferase 24 154 4.5E-23 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 YPK_1325 e89217c58943926e06888eb9d6521559 464 Pfam PF16325 Peptidase family U32 C-terminal domain 369 450 5.0E-22 T 12-10-2018 IPR032525 Peptidase family U32, C-terminal YPK_1325 e89217c58943926e06888eb9d6521559 464 Gene3D G3DSA:2.40.30.10 365 451 3.1E-11 T 12-10-2018 YPK_1325 e89217c58943926e06888eb9d6521559 464 Pfam PF01136 Peptidase family U32 86 353 4.0E-95 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YPK_1325 e89217c58943926e06888eb9d6521559 464 ProSitePatterns PS01276 Peptidase family U32 signature. 172 190 - T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YPK_1071 b977fb34b6fab30544aae4887916a387 252 Gene3D G3DSA:3.40.1180.10 5 244 3.1E-91 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 YPK_1071 b977fb34b6fab30544aae4887916a387 252 SUPERFAMILY SSF64005 14 238 4.71E-86 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 YPK_1071 b977fb34b6fab30544aae4887916a387 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 39.842 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 YPK_1071 b977fb34b6fab30544aae4887916a387 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 12-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 YPK_1071 b977fb34b6fab30544aae4887916a387 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 2.5E-78 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 YPK_1071 b977fb34b6fab30544aae4887916a387 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 16 242 2.7E-101 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 YPK_0740 d73f7943c9bf38076c87f82078047933 72 Gene3D G3DSA:1.20.1640.10 1 71 4.4E-18 T 12-10-2018 YPK_0740 d73f7943c9bf38076c87f82078047933 72 SUPERFAMILY SSF82866 1 60 4.71E-10 T 12-10-2018 YPK_0740 d73f7943c9bf38076c87f82078047933 72 Pfam PF00873 AcrB/AcrD/AcrF family 1 54 6.0E-16 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 YPK_2690 0c94b5e4dcb278b8f0ce4b68841cab31 236 Gene3D G3DSA:2.30.210.20 2 61 3.1E-26 T 12-10-2018 YPK_2690 0c94b5e4dcb278b8f0ce4b68841cab31 236 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 203 2.0E-73 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 YPK_2690 0c94b5e4dcb278b8f0ce4b68841cab31 236 SUPERFAMILY SSF55729 3 229 1.17E-94 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_2690 0c94b5e4dcb278b8f0ce4b68841cab31 236 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 39 214 1.6E-76 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 YPK_2690 0c94b5e4dcb278b8f0ce4b68841cab31 236 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 236 97.06 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 YPK_2690 0c94b5e4dcb278b8f0ce4b68841cab31 236 Gene3D G3DSA:3.40.630.70 62 235 9.9E-70 T 12-10-2018 YPK_1278 695d8974489163404315b1553d6966d8 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 YPK_1278 695d8974489163404315b1553d6966d8 107 Gene3D G3DSA:2.60.300.12 2 107 6.5E-37 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YPK_1278 695d8974489163404315b1553d6966d8 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 9.6E-26 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 YPK_1278 695d8974489163404315b1553d6966d8 107 SUPERFAMILY SSF89360 1 95 2.75E-33 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 YPK_1278 695d8974489163404315b1553d6966d8 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 5.6E-58 T 12-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 YPK_1278 695d8974489163404315b1553d6966d8 107 Hamap MF_01429 Iron-binding protein IscA [iscA]. 1 107 38.793 T 12-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 YPK_1278 695d8974489163404315b1553d6966d8 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 5.5E-37 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 YPK_0897 a14f0b19165f56e697bda9f3dbb8b685 595 Pfam PF03237 Terminase-like family 169 390 2.3E-51 T 12-10-2018 IPR004921 Terminase large subunit, T4likevirus-type YPK_0897 a14f0b19165f56e697bda9f3dbb8b685 595 Gene3D G3DSA:3.30.420.240 400 577 3.4E-11 T 12-10-2018 YPK_0897 a14f0b19165f56e697bda9f3dbb8b685 595 Gene3D G3DSA:3.40.50.300 88 313 7.8E-21 T 12-10-2018 YPK_0897 a14f0b19165f56e697bda9f3dbb8b685 595 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 11 64 2.3E-14 T 12-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 YPK_0897 a14f0b19165f56e697bda9f3dbb8b685 595 Pfam PF17289 Terminase RNaseH-like domain 418 576 7.2E-32 T 12-10-2018 IPR035421 Terminase, large subunit gp17-like YPK_3971 5b79edac393f8648cc1534ce5f211543 255 Pfam PF00005 ABC transporter 23 182 3.4E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3971 5b79edac393f8648cc1534ce5f211543 255 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3971 5b79edac393f8648cc1534ce5f211543 255 SUPERFAMILY SSF52540 5 253 1.13E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3971 5b79edac393f8648cc1534ce5f211543 255 SMART SM00382 31 231 8.1E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3971 5b79edac393f8648cc1534ce5f211543 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 254 3.4E-10 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal YPK_3971 5b79edac393f8648cc1534ce5f211543 255 Gene3D G3DSA:3.40.50.300 5 253 1.6E-61 T 12-10-2018 YPK_1600 2b24e51f6e21b28246513635682a98a2 247 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site YPK_1600 2b24e51f6e21b28246513635682a98a2 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 243 4.6E-69 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_1600 2b24e51f6e21b28246513635682a98a2 247 Gene3D G3DSA:3.40.190.10 110 205 2.2E-85 T 12-10-2018 YPK_1600 2b24e51f6e21b28246513635682a98a2 247 SUPERFAMILY SSF53850 8 244 3.37E-75 T 12-10-2018 YPK_1600 2b24e51f6e21b28246513635682a98a2 247 SMART SM00079 26 244 5.8E-8 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 YPK_1600 2b24e51f6e21b28246513635682a98a2 247 SMART SM00062 26 245 2.1E-73 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_1600 2b24e51f6e21b28246513635682a98a2 247 Gene3D G3DSA:3.40.190.10 35 242 2.2E-85 T 12-10-2018 YPK_2916 edbb21a49018f514430773ce7a6523be 490 Gene3D G3DSA:3.40.309.10 255 485 2.6E-80 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 YPK_2916 edbb21a49018f514430773ce7a6523be 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 YPK_2916 edbb21a49018f514430773ce7a6523be 490 SUPERFAMILY SSF53720 7 482 1.57E-171 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 YPK_2916 edbb21a49018f514430773ce7a6523be 490 Gene3D G3DSA:3.40.605.10 3 254 9.1E-104 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_2916 edbb21a49018f514430773ce7a6523be 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 3.5E-225 T 12-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 YPK_2916 edbb21a49018f514430773ce7a6523be 490 Pfam PF00171 Aldehyde dehydrogenase family 16 479 6.3E-178 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 YPK_2916 edbb21a49018f514430773ce7a6523be 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 YPK_2916 edbb21a49018f514430773ce7a6523be 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 57.563 T 12-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 YPK_1421 06307444b8dd15eb319f0298692345ee 548 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 309 8.4E-58 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 YPK_1421 06307444b8dd15eb319f0298692345ee 548 Gene3D G3DSA:3.50.50.60 5 342 7.8E-175 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1421 06307444b8dd15eb319f0298692345ee 548 Gene3D G3DSA:3.40.250.10 454 547 1.5E-23 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_1421 06307444b8dd15eb319f0298692345ee 548 Gene3D G3DSA:3.50.50.60 116 442 7.8E-175 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1421 06307444b8dd15eb319f0298692345ee 548 SUPERFAMILY SSF51905 1 318 6.94E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1421 06307444b8dd15eb319f0298692345ee 548 SUPERFAMILY SSF55424 325 447 1.36E-30 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 YPK_1421 06307444b8dd15eb319f0298692345ee 548 Pfam PF00581 Rhodanese-like domain 460 543 2.0E-12 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 1.4E-23 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 1.4E-23 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.4E-23 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 1.4E-23 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 1.4E-23 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 SMART SM00450 453 548 8.8E-17 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.5E-17 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 238 252 2.5E-17 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 180 2.5E-17 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 286 2.5E-17 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 404 2.5E-17 T 12-10-2018 YPK_1421 06307444b8dd15eb319f0298692345ee 548 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 332 434 3.8E-12 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 YPK_1421 06307444b8dd15eb319f0298692345ee 548 SUPERFAMILY SSF52821 432 543 3.4E-26 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_3357 2ddb4b5211605589b3fb85d125120c4a 358 SUPERFAMILY SSF51569 11 346 9.16E-136 T 12-10-2018 YPK_3357 2ddb4b5211605589b3fb85d125120c4a 358 PIRSF PIRSF001361 1 356 2.5E-163 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YPK_3357 2ddb4b5211605589b3fb85d125120c4a 358 Pfam PF00793 DAHP synthetase I family 41 342 3.5E-107 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YPK_3357 2ddb4b5211605589b3fb85d125120c4a 358 Gene3D G3DSA:3.20.20.70 4 352 1.0E-155 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3357 2ddb4b5211605589b3fb85d125120c4a 358 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 11 349 1.6E-167 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 PIRSF PIRSF004862 8 570 1.4E-162 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 Pfam PF08345 Flagellar M-ring protein C-terminal 255 447 1.0E-49 T 12-10-2018 IPR013556 Flagellar M-ring C-terminal YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 Pfam PF01514 Secretory protein of YscJ/FliF family 34 223 1.3E-73 T 12-10-2018 IPR006182 Secretory protein YscJ/FliF YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 18 569 2.8E-171 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 Gene3D G3DSA:3.30.300.30 125 226 1.8E-9 T 12-10-2018 YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 PRINTS PR01009 Flagellar M-ring protein signature 156 170 6.3E-43 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 PRINTS PR01009 Flagellar M-ring protein signature 124 142 6.3E-43 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 PRINTS PR01009 Flagellar M-ring protein signature 199 217 6.3E-43 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 PRINTS PR01009 Flagellar M-ring protein signature 268 286 6.3E-43 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_2391 6c7125f8266fc694bc069ea41ae4a54d 570 PRINTS PR01009 Flagellar M-ring protein signature 375 399 6.3E-43 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01021 OMPA domain signature 146 161 5.0E-13 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01021 OMPA domain signature 161 177 5.0E-13 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01021 OMPA domain signature 116 138 5.0E-13 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 SUPERFAMILY SSF103088 103 218 6.15E-37 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 199 219 2.4E-5 T 12-10-2018 YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 132 158 2.4E-5 T 12-10-2018 YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 179 198 2.4E-5 T 12-10-2018 YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 Gene3D G3DSA:3.30.1330.60 79 219 3.9E-51 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 Pfam PF00691 OmpA family 115 210 3.3E-21 T 12-10-2018 IPR006665 OmpA-like domain YPK_0019 6c785211c6df1d2a6d015a9d548ff633 219 Pfam PF13488 Glycine zipper 38 85 3.4E-11 T 12-10-2018 IPR039567 Glycine zipper domain YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 SUPERFAMILY SSF51430 2 259 7.33E-76 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 PIRSF PIRSF000097 1 266 1.2E-62 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 Gene3D G3DSA:3.20.20.100 1 267 2.0E-85 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 Pfam PF00248 Aldo/keto reductase family 8 250 2.6E-45 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 3.3E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 3.3E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 3.3E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 3.3E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 3.3E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YPK_1101 e7766844d9ecc68b7da289e85abe3766 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 YPK_2961 c15b8e47020d385728fa53c1e3b5b13e 110 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 30 107 1.1E-29 T 12-10-2018 IPR011846 Cyd operon protein YbgE YPK_2961 c15b8e47020d385728fa53c1e3b5b13e 110 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 19 110 5.4E-41 T 12-10-2018 IPR011846 Cyd operon protein YbgE YPK_0526 6f828bb966a65b33441b6dba57f40701 213 SUPERFAMILY SSF47616 82 208 1.08E-28 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily YPK_0526 6f828bb966a65b33441b6dba57f40701 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 105 194 4.6E-11 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal YPK_0526 6f828bb966a65b33441b6dba57f40701 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 1.4E-17 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 YPK_0526 6f828bb966a65b33441b6dba57f40701 213 SUPERFAMILY SSF52833 11 110 1.39E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_0526 6f828bb966a65b33441b6dba57f40701 213 Gene3D G3DSA:3.40.30.10 12 200 1.0E-81 T 12-10-2018 YPK_0526 6f828bb966a65b33441b6dba57f40701 213 Gene3D G3DSA:1.20.1050.10 89 193 1.0E-81 T 12-10-2018 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 Pfam PF01546 Peptidase family M20/M25/M40 72 480 2.1E-20 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 Gene3D G3DSA:3.40.630.10 340 486 4.5E-24 T 12-10-2018 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 SUPERFAMILY SSF53187 10 482 2.04E-66 T 12-10-2018 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 482 3.9E-183 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 450 472 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 363 381 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 428 444 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 9.4E-98 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 Gene3D G3DSA:3.40.630.10 1 235 9.7E-65 T 12-10-2018 YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 Pfam PF07687 Peptidase dimerisation domain 200 291 1.9E-5 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain YPK_3295 068264c18743bf51aeb26bc7dc3f6305 486 PIRSF PIRSF016599 1 485 1.1E-211 T 12-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 YPK_3688 f521b1fba1dcb1ea7874e059c6da3535 278 SUPERFAMILY SSF161098 72 257 1.27E-27 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3688 f521b1fba1dcb1ea7874e059c6da3535 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 275 1.3E-28 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3688 f521b1fba1dcb1ea7874e059c6da3535 278 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 7 53 1.8E-9 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_3688 f521b1fba1dcb1ea7874e059c6da3535 278 Gene3D G3DSA:1.10.3720.10 65 273 1.2E-23 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0549 8078c1d02b04e6d977fecf7ff6849af5 129 Gene3D G3DSA:3.30.70.260 33 113 5.1E-33 T 12-10-2018 YPK_0549 8078c1d02b04e6d977fecf7ff6849af5 129 Pfam PF13721 SecD export protein N-terminal TM region 11 106 4.3E-20 T 12-10-2018 IPR027398 SecD export protein N-terminal TM domain YPK_0549 8078c1d02b04e6d977fecf7ff6849af5 129 Hamap MF_00904 Modulator protein MzrA [mzrA]. 10 119 25.263 T 12-10-2018 IPR026574 Modulator protein MzrA YPK_3004 749882214483930664ba991f98bfc0e5 393 SUPERFAMILY SSF51905 7 384 5.28E-62 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_3004 749882214483930664ba991f98bfc0e5 393 Gene3D G3DSA:3.30.9.50 84 271 3.8E-104 T 12-10-2018 YPK_3004 749882214483930664ba991f98bfc0e5 393 Pfam PF01494 FAD binding domain 8 341 4.1E-26 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 YPK_3004 749882214483930664ba991f98bfc0e5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 5.4E-18 T 12-10-2018 YPK_3004 749882214483930664ba991f98bfc0e5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 5.4E-18 T 12-10-2018 YPK_3004 749882214483930664ba991f98bfc0e5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 5.4E-18 T 12-10-2018 YPK_3004 749882214483930664ba991f98bfc0e5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 5.4E-18 T 12-10-2018 YPK_3004 749882214483930664ba991f98bfc0e5 393 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 392 9.1E-125 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 YPK_3004 749882214483930664ba991f98bfc0e5 393 Gene3D G3DSA:3.50.50.60 9 340 3.8E-104 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 PIRSF PIRSF005900 8 167 4.4E-41 T 12-10-2018 IPR002177 DNA-binding protein Dps YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 SUPERFAMILY SSF47240 10 167 1.13E-46 T 12-10-2018 IPR009078 Ferritin-like superfamily YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 Pfam PF00210 Ferritin-like domain 30 166 5.3E-21 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 Gene3D G3DSA:1.20.1260.10 1 167 2.4E-52 T 12-10-2018 IPR012347 Ferritin-like YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 44.955 T 12-10-2018 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 2.4E-12 T 12-10-2018 IPR002177 DNA-binding protein Dps YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 2.4E-12 T 12-10-2018 IPR002177 DNA-binding protein Dps YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 2.4E-12 T 12-10-2018 IPR002177 DNA-binding protein Dps YPK_1602 7ee279ec2c2abccee0c5121e9c47037a 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 12-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 YPK_0116 7f2f58722987c38444cb77a58f616cf2 680 Gene3D G3DSA:1.10.1370.10 140 610 1.3E-267 T 12-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 YPK_0116 7f2f58722987c38444cb77a58f616cf2 680 SUPERFAMILY SSF55486 1 677 2.2E-215 T 12-10-2018 YPK_0116 7f2f58722987c38444cb77a58f616cf2 680 Pfam PF01432 Peptidase family M3 222 677 2.3E-168 T 12-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 YPK_0116 7f2f58722987c38444cb77a58f616cf2 680 Gene3D G3DSA:1.10.1370.40 13 675 1.3E-267 T 12-10-2018 YPK_2491 6e69791c67a9db2604c7213c2ea64aea 338 Gene3D G3DSA:1.10.260.40 1 57 2.0E-20 T 12-10-2018 YPK_2491 6e69791c67a9db2604c7213c2ea64aea 338 SUPERFAMILY SSF53822 57 319 1.04E-40 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2491 6e69791c67a9db2604c7213c2ea64aea 338 Gene3D G3DSA:3.40.50.2300 76 316 1.4E-83 T 12-10-2018 YPK_2491 6e69791c67a9db2604c7213c2ea64aea 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 4.6E-12 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_2491 6e69791c67a9db2604c7213c2ea64aea 338 SMART SM00354 1 70 9.3E-18 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_2491 6e69791c67a9db2604c7213c2ea64aea 338 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 310 3.0E-33 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_2491 6e69791c67a9db2604c7213c2ea64aea 338 SUPERFAMILY SSF47413 2 58 2.69E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_2491 6e69791c67a9db2604c7213c2ea64aea 338 Gene3D G3DSA:3.40.50.2300 162 291 1.4E-83 T 12-10-2018 YPK_0014 2cd852f6548b18405bbe2405309a7eba 456 SUPERFAMILY SSF53383 97 445 3.3E-59 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0014 2cd852f6548b18405bbe2405309a7eba 456 Pfam PF00155 Aminotransferase class I and II 103 426 9.6E-22 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_0014 2cd852f6548b18405bbe2405309a7eba 456 Gene3D G3DSA:3.40.640.10 35 450 1.5E-144 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_0748 75dba4918c4bb6b5ff69746a81f612a0 518 Pfam PF03806 AbgT putative transporter family 14 514 2.3E-159 T 12-10-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 YPK_3960 61346d1e2643c3da3d18fac8b0e88ee6 281 Gene3D G3DSA:1.10.3720.10 2 274 1.3E-53 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3960 61346d1e2643c3da3d18fac8b0e88ee6 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 276 3.1E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3960 61346d1e2643c3da3d18fac8b0e88ee6 281 SUPERFAMILY SSF161098 4 277 1.15E-58 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3694 60f4ccaef790df74807f44f49d430e34 158 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 6 157 6.1E-54 T 12-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_3694 60f4ccaef790df74807f44f49d430e34 158 Pfam PF06754 Phosphonate metabolism protein PhnG 7 156 1.5E-51 T 12-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_3973 28a21f8131b1ee37012722f45a602b81 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 1.3E-63 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 SMART SM00345 23 82 1.4E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 SMART SM00866 102 239 1.5E-25 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 Gene3D G3DSA:1.10.10.10 6 83 3.3E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 5.0E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 5.0E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 SUPERFAMILY SSF46785 12 85 2.24E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 Gene3D G3DSA:3.40.1410.10 85 248 2.3E-32 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 SUPERFAMILY SSF64288 70 246 1.32E-34 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 2.2E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1988 774f17bd9e4c989d1bea8ede2904bae6 249 Pfam PF07702 UTRA domain 103 237 1.1E-21 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 YPK_0786 64a3b175d16b9c1e364409c9d019641d 590 Pfam PF06276 Ferric iron reductase FhuF-like transporter 410 565 2.2E-26 T 12-10-2018 IPR022770 Ferric iron reductase FhuF domain YPK_0786 64a3b175d16b9c1e364409c9d019641d 590 Pfam PF04183 IucA / IucC family 147 375 1.7E-54 T 12-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 YPK_0786 64a3b175d16b9c1e364409c9d019641d 590 Gene3D G3DSA:1.10.510.40 371 534 2.6E-9 T 12-10-2018 YPK_0115 de6a60228fd47608670eddb5cc047074 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.75 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 YPK_0115 de6a60228fd47608670eddb5cc047074 280 SUPERFAMILY SSF53335 9 279 4.0E-100 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0115 de6a60228fd47608670eddb5cc047074 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_0115 de6a60228fd47608670eddb5cc047074 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 3.2E-111 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 YPK_0115 de6a60228fd47608670eddb5cc047074 280 Gene3D G3DSA:3.40.50.150 1 280 3.0E-120 T 12-10-2018 YPK_0926 d62e7847c4355ff25876da419fe42309 565 Gene3D G3DSA:2.40.50.230 262 347 2.8E-5 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_0926 d62e7847c4355ff25876da419fe42309 565 SUPERFAMILY SSF69255 256 348 3.66E-14 T 12-10-2018 YPK_0926 d62e7847c4355ff25876da419fe42309 565 SUPERFAMILY SSF69349 339 512 1.8E-19 T 12-10-2018 YPK_2566 dd5ed1ae3c4753c323c3f02fa44419d8 330 SUPERFAMILY SSF53822 25 329 3.34E-84 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2566 dd5ed1ae3c4753c323c3f02fa44419d8 330 Pfam PF13407 Periplasmic binding protein domain 27 298 1.3E-63 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_2566 dd5ed1ae3c4753c323c3f02fa44419d8 330 Gene3D G3DSA:3.40.50.2300 133 278 1.2E-122 T 12-10-2018 YPK_2566 dd5ed1ae3c4753c323c3f02fa44419d8 330 Gene3D G3DSA:3.40.50.2300 27 301 1.2E-122 T 12-10-2018 YPK_0511 6648d6fb917f2e7e1522a3d21e929031 324 Gene3D G3DSA:1.20.58.1130 8 207 2.2E-85 T 12-10-2018 YPK_0511 6648d6fb917f2e7e1522a3d21e929031 324 Pfam PF01699 Sodium/calcium exchanger protein 5 144 8.1E-30 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 YPK_0511 6648d6fb917f2e7e1522a3d21e929031 324 Pfam PF01699 Sodium/calcium exchanger protein 175 317 3.2E-27 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 YPK_0511 6648d6fb917f2e7e1522a3d21e929031 324 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 312 9.6E-89 T 12-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 YPK_0511 6648d6fb917f2e7e1522a3d21e929031 324 Gene3D G3DSA:1.20.1420.30 35 309 2.2E-85 T 12-10-2018 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 Pfam PF00459 Inositol monophosphatase family 2 257 2.4E-70 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 Gene3D G3DSA:3.40.190.80 142 267 1.1E-40 T 12-10-2018 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 4.1E-59 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 4.1E-59 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 4.1E-59 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 4.1E-59 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 4.1E-59 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 4.1E-59 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 SUPERFAMILY SSF56655 1 258 1.96E-85 T 12-10-2018 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 Gene3D G3DSA:3.30.540.10 1 140 5.4E-52 T 12-10-2018 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 1.2E-37 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 1.2E-37 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 1.2E-37 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 1.2E-37 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 12-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 YPK_1273 d0c5e8d040df7b8f56109d8bc12c6dd8 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site YPK_0772 e9a38b5bc574840b74fa3c6553632752 327 PRINTS PR00394 RHS protein signature 167 187 7.1E-16 T 12-10-2018 IPR001826 RHS protein YPK_0772 e9a38b5bc574840b74fa3c6553632752 327 PRINTS PR00394 RHS protein signature 190 209 7.1E-16 T 12-10-2018 IPR001826 RHS protein YPK_0772 e9a38b5bc574840b74fa3c6553632752 327 PRINTS PR00394 RHS protein signature 113 133 7.1E-16 T 12-10-2018 IPR001826 RHS protein YPK_0772 e9a38b5bc574840b74fa3c6553632752 327 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 147 222 5.0E-26 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YPK_0772 e9a38b5bc574840b74fa3c6553632752 327 Gene3D G3DSA:2.180.10.10 90 222 1.4E-30 T 12-10-2018 YPK_0772 e9a38b5bc574840b74fa3c6553632752 327 Pfam PF03527 RHS protein 119 152 1.7E-11 T 12-10-2018 IPR001826 RHS protein YPK_2151 631e762c89ddde1d18f436150e1dd117 267 PIRSF PIRSF006325 21 263 3.6E-134 T 12-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 YPK_2151 631e762c89ddde1d18f436150e1dd117 267 SUPERFAMILY SSF53335 40 262 1.16E-40 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2151 631e762c89ddde1d18f436150e1dd117 267 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 24 262 1.1E-125 T 12-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 YPK_2151 631e762c89ddde1d18f436150e1dd117 267 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 23 262 42.661 T 12-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 YPK_2151 631e762c89ddde1d18f436150e1dd117 267 Gene3D G3DSA:3.40.50.150 38 267 1.5E-66 T 12-10-2018 YPK_2151 631e762c89ddde1d18f436150e1dd117 267 Pfam PF13649 Methyltransferase domain 80 178 8.2E-14 T 12-10-2018 YPK_1340 1d25c864989977935e8e4af24cf659a7 450 Pfam PF00012 Hsp70 protein 331 422 9.8E-6 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1340 1d25c864989977935e8e4af24cf659a7 450 Pfam PF00012 Hsp70 protein 130 228 5.2E-10 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 YPK_1340 1d25c864989977935e8e4af24cf659a7 450 SUPERFAMILY SSF53067 208 447 2.07E-32 T 12-10-2018 YPK_1340 1d25c864989977935e8e4af24cf659a7 450 Gene3D G3DSA:3.30.420.40 379 433 7.5E-13 T 12-10-2018 YPK_1340 1d25c864989977935e8e4af24cf659a7 450 SUPERFAMILY SSF53067 1 204 1.91E-26 T 12-10-2018 YPK_1340 1d25c864989977935e8e4af24cf659a7 450 Gene3D G3DSA:3.90.640.10 311 378 7.5E-13 T 12-10-2018 YPK_1340 1d25c864989977935e8e4af24cf659a7 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 YPK_0169 06dc8a80f190855b1b1a7a7d03d50f2a 75 Pfam PF04023 FeoA domain 8 63 3.3E-6 T 12-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 YPK_0169 06dc8a80f190855b1b1a7a7d03d50f2a 75 SMART SM00899 1 72 4.1E-7 T 12-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 YPK_0169 06dc8a80f190855b1b1a7a7d03d50f2a 75 Gene3D G3DSA:2.30.30.90 1 75 7.1E-28 T 12-10-2018 IPR038157 Ferrous iron transporter, core domain YPK_0169 06dc8a80f190855b1b1a7a7d03d50f2a 75 SUPERFAMILY SSF50037 6 70 3.36E-14 T 12-10-2018 IPR008988 Transcriptional repressor, C-terminal YPK_3238 8b346dbcbdbf3ea28143d930a6911c6a 192 Pfam PF08139 Prokaryotic membrane lipoprotein lipid attachment site 1 19 3.7E-5 T 12-10-2018 IPR012640 Membrane lipoprotein, lipid attachment site YPK_3238 8b346dbcbdbf3ea28143d930a6911c6a 192 Pfam PF03923 Uncharacterized lipoprotein 29 188 4.6E-54 T 12-10-2018 IPR005619 Uncharacterised protein family, YajG YPK_3415 2da7241a51378c9dc3a3d474694a7721 113 SMART SM00418 8 86 3.3E-26 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YPK_3415 2da7241a51378c9dc3a3d474694a7721 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 41 7.4E-23 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YPK_3415 2da7241a51378c9dc3a3d474694a7721 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 7.4E-23 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YPK_3415 2da7241a51378c9dc3a3d474694a7721 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 7.4E-23 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YPK_3415 2da7241a51378c9dc3a3d474694a7721 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 7.4E-23 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YPK_3415 2da7241a51378c9dc3a3d474694a7721 113 SUPERFAMILY SSF46785 2 91 1.86E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3415 2da7241a51378c9dc3a3d474694a7721 113 Gene3D G3DSA:1.10.10.10 4 92 3.9E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3415 2da7241a51378c9dc3a3d474694a7721 113 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 1.5E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 YPK_2443 c302fecfec06bfc399ca560f24a525f6 141 ProDom PD077599 YEBF LIPOPROTEIN EXPORTED PERIPLASMIC PRECURSOR SIGNAL SIMILAR PALMITATE MEMBRANE ESCHERICHIA 30 119 3.0E-47 T 12-10-2018 IPR025603 YebF/Colicin-M immunity protein YPK_2443 c302fecfec06bfc399ca560f24a525f6 141 Pfam PF13995 YebF-like protein 32 119 1.4E-39 T 12-10-2018 IPR025603 YebF/Colicin-M immunity protein YPK_2443 c302fecfec06bfc399ca560f24a525f6 141 Hamap MF_01435 Protein YebF [yebF]. 6 122 38.535 T 12-10-2018 IPR020236 Uncharacterised protein family YebF YPK_2443 c302fecfec06bfc399ca560f24a525f6 141 Gene3D G3DSA:3.10.450.300 26 127 1.0E-38 T 12-10-2018 IPR038703 YebF/Cmi superfamily YPK_2279 388a2ca9030913d0edc14e5fde31e936 286 SUPERFAMILY SSF161098 51 275 1.44E-60 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2279 388a2ca9030913d0edc14e5fde31e936 286 Gene3D G3DSA:1.10.3720.10 46 285 7.1E-70 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2279 388a2ca9030913d0edc14e5fde31e936 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 276 3.3E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 SUPERFAMILY SSF56176 203 289 1.12E-23 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 SUPERFAMILY SSF54631 66 202 3.79E-32 T 12-10-2018 YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 Pfam PF03471 Transporter associated domain 206 281 8.1E-22 T 12-10-2018 IPR005170 Transporter-associated domain YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 Pfam PF00571 CBS domain 143 189 1.2E-4 T 12-10-2018 IPR000644 CBS domain YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 Pfam PF00571 CBS domain 69 123 5.3E-8 T 12-10-2018 IPR000644 CBS domain YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 Gene3D G3DSA:3.10.580.10 51 197 3.4E-56 T 12-10-2018 YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 SMART SM00116 78 127 3.9 T 12-10-2018 IPR000644 CBS domain YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 SMART SM00116 141 189 3.9 T 12-10-2018 IPR000644 CBS domain YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 Gene3D G3DSA:3.30.465.10 198 292 2.2E-34 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_3008 fcac28571f59bceb9dbff9163dd502b4 292 SMART SM01091 205 283 1.8E-29 T 12-10-2018 IPR005170 Transporter-associated domain YPK_0941 00c1c465d5ae0f2d165ebead0e85019e 390 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 37 340 7.4E-66 T 12-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid YPK_0941 00c1c465d5ae0f2d165ebead0e85019e 390 Pfam PF05125 Phage major capsid protein, P2 family 36 351 1.1E-79 T 12-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid YPK_2521 7cbc3d046d43f34a6f88988ea12a8601 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 322 9.9E-38 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1489 a70c6a890ef8628eaa39ac06264ace5f 268 SUPERFAMILY SSF144059 5 265 6.8E-86 T 12-10-2018 YPK_1489 a70c6a890ef8628eaa39ac06264ace5f 268 PIRSF PIRSF029288 1 267 1.4E-99 T 12-10-2018 IPR009211 Predicted virulence protein, SciE type YPK_1489 a70c6a890ef8628eaa39ac06264ace5f 268 Gene3D G3DSA:1.25.40.10 7 89 3.8E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1489 a70c6a890ef8628eaa39ac06264ace5f 268 Pfam PF07024 ImpE protein 145 261 1.3E-41 T 12-10-2018 IPR009211 Predicted virulence protein, SciE type YPK_2074 7e182e411284c5073c201b70d493c287 135 Gene3D G3DSA:1.10.287.1050 1 83 9.1E-37 T 12-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 YPK_2074 7e182e411284c5073c201b70d493c287 135 SMART SM00528 87 135 5.0E-23 T 12-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 YPK_2074 7e182e411284c5073c201b70d493c287 135 SUPERFAMILY SSF81273 93 135 1.14E-11 T 12-10-2018 YPK_2074 7e182e411284c5073c201b70d493c287 135 SUPERFAMILY SSF81273 2 58 2.94E-18 T 12-10-2018 YPK_2074 7e182e411284c5073c201b70d493c287 135 Gene3D G3DSA:4.10.430.10 91 135 5.1E-25 T 12-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 YPK_2074 7e182e411284c5073c201b70d493c287 135 Pfam PF00816 H-NS histone family 32 127 4.3E-19 T 12-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 YPK_2074 7e182e411284c5073c201b70d493c287 135 PIRSF PIRSF002096 1 135 1.6E-56 T 12-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 SUPERFAMILY SSF53822 62 324 2.17E-51 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 311 3.8E-23 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 50 3.2E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 Gene3D G3DSA:3.40.50.2300 161 292 1.7E-57 T 12-10-2018 YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 SMART SM00354 5 75 6.0E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 SUPERFAMILY SSF47413 4 53 7.31E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 12-10-2018 YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 Gene3D G3DSA:3.40.50.2300 67 309 1.7E-57 T 12-10-2018 YPK_1578 c4064a8d2b37829f540dd5b15eb84062 330 Gene3D G3DSA:1.10.260.40 1 61 4.5E-15 T 12-10-2018 YPK_3190 ed013babbe2fa1f506db0d7cdd7a925d 357 SUPERFAMILY SSF51735 5 348 2.56E-67 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3190 ed013babbe2fa1f506db0d7cdd7a925d 357 Pfam PF16363 GDP-mannose 4,6 dehydratase 13 327 8.6E-34 T 12-10-2018 IPR016040 NAD(P)-binding domain YPK_3190 ed013babbe2fa1f506db0d7cdd7a925d 357 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 6 354 2.4E-160 T 12-10-2018 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833 YPK_3190 ed013babbe2fa1f506db0d7cdd7a925d 357 Gene3D G3DSA:3.90.25.10 194 357 4.9E-72 T 12-10-2018 YPK_3190 ed013babbe2fa1f506db0d7cdd7a925d 357 Gene3D G3DSA:3.40.50.720 1 193 2.7E-51 T 12-10-2018 YPK_1420 e129dcba1c24d2989ba7bdc79829a0cc 486 Gene3D G3DSA:1.20.1730.10 22 485 6.6E-26 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 SUPERFAMILY SSF158472 186 230 6.02E-5 T 12-10-2018 YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 449 8.7E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 SMART SM00387 347 458 5.8E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 454 9.7E-121 T 12-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 Pfam PF00672 HAMP domain 185 231 3.6E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 SMART SM00304 184 237 1.5E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 304 2.0E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 SUPERFAMILY SSF55874 293 449 1.1E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 Gene3D G3DSA:3.30.565.10 310 459 8.5E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 SUPERFAMILY SSF47384 221 305 4.71E-17 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 Gene3D G3DSA:1.10.287.130 188 304 3.7E-23 T 12-10-2018 YPK_2193 2f56d739a8a6bfa45980f3f4689c34b7 461 SMART SM00388 238 304 1.4E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 YPK_2138 9e524d1239f0091d079daf27207fdd0f 320 PIRSF PIRSF026649 11 315 3.2E-92 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YPK_2138 9e524d1239f0091d079daf27207fdd0f 320 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 306 6.8E-94 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 YPK_2138 9e524d1239f0091d079daf27207fdd0f 320 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 11 315 3.4E-133 T 12-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 YPK_2138 9e524d1239f0091d079daf27207fdd0f 320 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 311 53.918 T 12-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 YPK_2520 858f68e3a9b42929139fd514712d8cae 518 Pfam PF00005 ABC transporter 24 175 3.5E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2520 858f68e3a9b42929139fd514712d8cae 518 Gene3D G3DSA:3.40.50.300 280 511 2.8E-40 T 12-10-2018 YPK_2520 858f68e3a9b42929139fd514712d8cae 518 SMART SM00382 299 495 1.5E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2520 858f68e3a9b42929139fd514712d8cae 518 SMART SM00382 33 223 6.3E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2520 858f68e3a9b42929139fd514712d8cae 518 ProSitePatterns PS00211 ABC transporters family signature. 417 431 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2520 858f68e3a9b42929139fd514712d8cae 518 Gene3D G3DSA:3.40.50.300 4 248 7.7E-56 T 12-10-2018 YPK_2520 858f68e3a9b42929139fd514712d8cae 518 SUPERFAMILY SSF52540 285 504 6.97E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2520 858f68e3a9b42929139fd514712d8cae 518 Pfam PF00005 ABC transporter 290 444 2.7E-17 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2520 858f68e3a9b42929139fd514712d8cae 518 SUPERFAMILY SSF52540 9 233 3.86E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2367 b0f919a79b9194d96f18494584bcadee 494 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 490 8.8E-229 T 12-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 YPK_2367 b0f919a79b9194d96f18494584bcadee 494 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site YPK_2367 b0f919a79b9194d96f18494584bcadee 494 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site YPK_2367 b0f919a79b9194d96f18494584bcadee 494 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 3.1E-123 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YPK_2367 b0f919a79b9194d96f18494584bcadee 494 Pfam PF00474 Sodium:solute symporter family 35 437 3.1E-139 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 YPK_2367 b0f919a79b9194d96f18494584bcadee 494 Gene3D G3DSA:1.20.1730.10 23 493 3.9E-93 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily YPK_0638 51df37adbe29dac42b76cedd65403cda 216 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.771 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 YPK_0638 51df37adbe29dac42b76cedd65403cda 216 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 1.7E-51 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 YPK_0638 51df37adbe29dac42b76cedd65403cda 216 SMART SM01207 10 185 2.0E-85 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 YPK_0638 51df37adbe29dac42b76cedd65403cda 216 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 195 7.1E-81 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 YPK_0606 1c21f0d867e1bb2dc0ea6a6fef55c0b2 238 SUPERFAMILY SSF52833 31 236 9.01E-28 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_0606 1c21f0d867e1bb2dc0ea6a6fef55c0b2 238 Gene3D G3DSA:3.40.30.10 34 230 1.0E-60 T 12-10-2018 YPK_0606 1c21f0d867e1bb2dc0ea6a6fef55c0b2 238 Gene3D G3DSA:1.10.472.60 75 203 1.0E-60 T 12-10-2018 YPK_0683 3041f2226a89205cce1429a8cabdc536 375 SUPERFAMILY SSF52540 144 331 3.6E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0683 3041f2226a89205cce1429a8cabdc536 375 Gene3D G3DSA:3.40.50.300 145 353 3.0E-10 T 12-10-2018 YPK_1151 3435b30327e23abe351235ce6d29feb6 175 Gene3D G3DSA:1.10.1220.10 1 40 3.1E-24 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YPK_1151 3435b30327e23abe351235ce6d29feb6 175 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 175 41.771 T 12-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 YPK_1151 3435b30327e23abe351235ce6d29feb6 175 PIRSF PIRSF019401 46 175 2.9E-31 T 12-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 YPK_1151 3435b30327e23abe351235ce6d29feb6 175 PIRSF PIRSF019401 1 68 7.4E-17 T 12-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 YPK_1151 3435b30327e23abe351235ce6d29feb6 175 SUPERFAMILY SSF47598 1 35 4.97E-14 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YPK_1151 3435b30327e23abe351235ce6d29feb6 175 SUPERFAMILY SSF82808 60 175 6.02E-48 T 12-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 YPK_1151 3435b30327e23abe351235ce6d29feb6 175 Pfam PF17206 SeqA protein N-terminal domain 1 36 6.1E-24 T 12-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal YPK_1151 3435b30327e23abe351235ce6d29feb6 175 Pfam PF03925 SeqA protein C-terminal domain 65 173 1.5E-47 T 12-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 YPK_1151 3435b30327e23abe351235ce6d29feb6 175 Gene3D G3DSA:1.20.1380.10 62 175 1.4E-44 T 12-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 Pfam PF00230 Major intrinsic protein 6 253 1.2E-71 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 ProSitePatterns PS00221 MIP family signature. 68 76 - T 12-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 253 7.8E-73 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 236 256 6.0E-52 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 87 106 6.0E-52 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 50 74 6.0E-52 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 153 171 6.0E-52 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 11 30 6.0E-52 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 PRINTS PR00783 Major intrinsic protein family signature 186 208 6.0E-52 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 Gene3D G3DSA:1.20.1080.10 3 261 6.5E-108 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 YPK_4112 adf11d43f1c641ac0fa8f4e6857ef64f 282 SUPERFAMILY SSF81338 11 259 8.11E-80 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 YPK_1779 4f096dbb1937f9a83870074cfc1f4bcd 876 Pfam PF02470 MlaD protein 280 348 3.5E-6 T 12-10-2018 IPR003399 Mce/MlaD YPK_1779 4f096dbb1937f9a83870074cfc1f4bcd 876 Pfam PF02470 MlaD protein 395 452 4.1E-6 T 12-10-2018 IPR003399 Mce/MlaD YPK_1779 4f096dbb1937f9a83870074cfc1f4bcd 876 Pfam PF02470 MlaD protein 634 722 2.6E-10 T 12-10-2018 IPR003399 Mce/MlaD YPK_1779 4f096dbb1937f9a83870074cfc1f4bcd 876 Pfam PF02470 MlaD protein 163 220 1.7E-6 T 12-10-2018 IPR003399 Mce/MlaD YPK_1779 4f096dbb1937f9a83870074cfc1f4bcd 876 Pfam PF02470 MlaD protein 747 806 2.7E-8 T 12-10-2018 IPR003399 Mce/MlaD YPK_1779 4f096dbb1937f9a83870074cfc1f4bcd 876 Pfam PF02470 MlaD protein 46 137 1.3E-15 T 12-10-2018 IPR003399 Mce/MlaD YPK_0176 45ce53a4442fb25d1dfc86181590990f 135 Pfam PF01479 S4 domain 11 57 1.1E-11 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0176 45ce53a4442fb25d1dfc86181590990f 135 Gene3D G3DSA:3.10.290.10 3 110 3.7E-39 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_0176 45ce53a4442fb25d1dfc86181590990f 135 PIRSF PIRSF016821 8 135 1.3E-42 T 12-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 YPK_0176 45ce53a4442fb25d1dfc86181590990f 135 SUPERFAMILY SSF55174 10 106 7.59E-31 T 12-10-2018 YPK_0176 45ce53a4442fb25d1dfc86181590990f 135 SMART SM00363 11 72 9.8E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_2676 7d566640d56a0f5355f5d2573f052e82 285 Pfam PF01226 Formate/nitrite transporter 15 276 8.9E-76 T 12-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 YPK_2676 7d566640d56a0f5355f5d2573f052e82 285 Gene3D G3DSA:1.20.1080.10 1 268 2.9E-104 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 YPK_2676 7d566640d56a0f5355f5d2573f052e82 285 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 12-10-2018 IPR024002 Formate/nitrite transporter, conserved site YPK_2676 7d566640d56a0f5355f5d2573f052e82 285 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 14 279 1.7E-129 T 12-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 YPK_2676 7d566640d56a0f5355f5d2573f052e82 285 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 12-10-2018 IPR024002 Formate/nitrite transporter, conserved site YPK_2676 7d566640d56a0f5355f5d2573f052e82 285 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 280 1.0E-92 T 12-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 Hamap MF_00416 Flagellar P-ring protein [flgI]. 5 369 38.471 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 108 125 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 125 143 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 165 183 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 40 55 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 86 105 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 25 40 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 60 75 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 191 209 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 PRINTS PR01010 Flagellar P-ring protein signature 255 267 6.2E-88 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_2418 ac71fe9f4fc19cff72639c663339ed6c 369 Pfam PF02119 Flagellar P-ring protein 25 368 6.8E-134 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 YPK_1549 b28b4d603034cca7be45933a40f119d5 344 SMART SM00354 12 82 7.1E-29 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1549 b28b4d603034cca7be45933a40f119d5 344 Gene3D G3DSA:3.40.50.2300 74 317 7.3E-58 T 12-10-2018 YPK_1549 b28b4d603034cca7be45933a40f119d5 344 SUPERFAMILY SSF53822 70 324 2.12E-42 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1549 b28b4d603034cca7be45933a40f119d5 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 3.8E-18 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 YPK_1549 b28b4d603034cca7be45933a40f119d5 344 SUPERFAMILY SSF47413 12 70 1.35E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1549 b28b4d603034cca7be45933a40f119d5 344 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 12-10-2018 YPK_1549 b28b4d603034cca7be45933a40f119d5 344 Pfam PF13377 Periplasmic binding protein-like domain 179 328 2.0E-26 T 12-10-2018 YPK_1549 b28b4d603034cca7be45933a40f119d5 344 Gene3D G3DSA:1.10.260.40 4 70 1.3E-20 T 12-10-2018 YPK_1549 b28b4d603034cca7be45933a40f119d5 344 Gene3D G3DSA:3.40.50.2300 168 301 7.3E-58 T 12-10-2018 YPK_0658 0644eae135a740e8727e8097b6310b8e 193 Pfam PF05728 Uncharacterised protein family (UPF0227) 4 188 2.8E-69 T 12-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPK_0658 0644eae135a740e8727e8097b6310b8e 193 SUPERFAMILY SSF53474 3 188 2.73E-17 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0658 0644eae135a740e8727e8097b6310b8e 193 Gene3D G3DSA:3.40.50.1820 1 193 3.5E-64 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2542 795974d4ad9791edfe8e472424b2fffb 346 SUPERFAMILY SSF81345 20 339 1.96E-58 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2542 795974d4ad9791edfe8e472424b2fffb 346 Pfam PF01032 FecCD transport family 35 339 4.3E-75 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_2542 795974d4ad9791edfe8e472424b2fffb 346 Gene3D G3DSA:1.10.3470.10 21 345 5.8E-72 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_1789 36744fd07c200afd519d8101fa139cd5 387 SUPERFAMILY SSF49401 251 386 1.29E-21 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_1789 36744fd07c200afd519d8101fa139cd5 387 Pfam PF00419 Fimbrial protein 249 387 5.8E-13 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_1789 36744fd07c200afd519d8101fa139cd5 387 Gene3D G3DSA:2.60.40.1090 250 387 8.0E-25 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_0089 d399ccc3315be852171df666a1f5b2ee 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 336 1.1E-47 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0089 d399ccc3315be852171df666a1f5b2ee 339 SUPERFAMILY SSF161098 89 322 7.52E-23 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1051 0f6eaa5e9da40f58704083bf04853a5c 44 Pfam PF06004 Bacterial protein of unknown function (DUF903) 10 35 3.1E-8 T 12-10-2018 IPR010305 Protein of unknown function DUF903 YPK_1051 0f6eaa5e9da40f58704083bf04853a5c 44 SUPERFAMILY SSF50182 10 43 3.43E-8 T 12-10-2018 IPR010920 LSM domain superfamily YPK_1051 0f6eaa5e9da40f58704083bf04853a5c 44 Gene3D G3DSA:2.30.30.100 8 44 1.2E-11 T 12-10-2018 YPK_2976 e165bd1fe278bb33606d45ac53126303 553 Gene3D G3DSA:3.40.50.300 310 553 2.7E-50 T 12-10-2018 YPK_2976 e165bd1fe278bb33606d45ac53126303 553 Gene3D G3DSA:3.40.50.300 1 224 2.8E-44 T 12-10-2018 YPK_2976 e165bd1fe278bb33606d45ac53126303 553 SUPERFAMILY SSF52540 1 514 1.34E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2976 e165bd1fe278bb33606d45ac53126303 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 512 3.6E-19 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal YPK_2976 e165bd1fe278bb33606d45ac53126303 553 PIRSF PIRSF003128 1 553 8.4E-157 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 YPK_2976 e165bd1fe278bb33606d45ac53126303 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.1E-166 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 YPK_3133 26141a2880f4c4e956871ca8d273ff69 156 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 106 111 - T 12-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site YPK_3133 26141a2880f4c4e956871ca8d273ff69 156 TIGRFAM TIGR00608 radc: DNA repair protein RadC 41 156 1.1E-39 T 12-10-2018 IPR001405 Uncharacterised protein family UPF0758 YPK_3133 26141a2880f4c4e956871ca8d273ff69 156 Gene3D G3DSA:3.40.140.10 35 156 1.7E-40 T 12-10-2018 YPK_3133 26141a2880f4c4e956871ca8d273ff69 156 Pfam PF04002 RadC-like JAB domain 43 155 1.1E-40 T 12-10-2018 IPR025657 RadC-like JAB domain YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 Gene3D G3DSA:2.160.10.10 1 196 1.5E-50 T 12-10-2018 YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 47.811 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 PIRSF PIRSF000456 4 262 2.5E-105 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.0E-107 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 3.6E-28 T 12-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 1.5E-6 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 52 2.4E-7 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 Gene3D G3DSA:1.20.1180.10 197 262 8.4E-27 T 12-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 YPK_1078 be82f15e94e118d9b0e5b060f837ec00 262 SUPERFAMILY SSF51161 2 262 1.36E-76 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily YPK_3071 580a194b4f34d41491efdfa024a3f24d 176 Pfam PF14345 GDYXXLXY protein 16 165 2.7E-35 T 12-10-2018 IPR025833 GDYXXLXY protein YPK_2838 0ad5a9fcb72f78441884b417de9fbb6a 202 SUPERFAMILY SSF46689 16 81 5.99E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2838 0ad5a9fcb72f78441884b417de9fbb6a 202 SUPERFAMILY SSF48498 93 185 3.3E-9 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPK_2838 0ad5a9fcb72f78441884b417de9fbb6a 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 4.2E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_2838 0ad5a9fcb72f78441884b417de9fbb6a 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 4.2E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_2838 0ad5a9fcb72f78441884b417de9fbb6a 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 1.8E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_2838 0ad5a9fcb72f78441884b417de9fbb6a 202 Gene3D G3DSA:1.10.357.10 9 191 1.7E-46 T 12-10-2018 YPK_3402 6963c57fc124cb7092a46ffbdd6d689f 293 SUPERFAMILY SSF51658 13 277 1.96E-56 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily YPK_3402 6963c57fc124cb7092a46ffbdd6d689f 293 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 4 283 1.3E-136 T 12-10-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00040+5.1.3.22|KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 YPK_3402 6963c57fc124cb7092a46ffbdd6d689f 293 Pfam PF01261 Xylose isomerase-like TIM barrel 23 234 1.2E-35 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain YPK_3402 6963c57fc124cb7092a46ffbdd6d689f 293 Gene3D G3DSA:3.20.20.150 2 286 2.5E-74 T 12-10-2018 YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 Gene3D G3DSA:2.40.50.230 362 463 5.2E-42 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 14 511 1.2E-118 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 SUPERFAMILY SSF69279 6 192 5.53E-50 T 12-10-2018 YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 SUPERFAMILY SSF69279 200 371 2.04E-34 T 12-10-2018 YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 SUPERFAMILY SSF69349 449 656 1.02E-43 T 12-10-2018 YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 6 528 3.9E-154 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 Gene3D G3DSA:2.30.110.50 5 336 2.4E-89 T 12-10-2018 YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 Pfam PF05954 Phage late control gene D protein (GPD) 18 335 9.9E-87 T 12-10-2018 YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 Gene3D G3DSA:3.55.50.10 106 196 2.4E-89 T 12-10-2018 YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 SUPERFAMILY SSF69255 371 459 5.23E-32 T 12-10-2018 YPK_1486 35e54bea2fbcd931ca7754addd46b2ed 922 Gene3D G3DSA:3.30.1920.30 232 294 2.4E-89 T 12-10-2018 YPK_3852 7aaeb75657213b53e752f3e2b8973b8f 119 SUPERFAMILY SSF142906 1 115 1.09E-36 T 12-10-2018 IPR038056 YjbR-like superfamily YPK_3852 7aaeb75657213b53e752f3e2b8973b8f 119 Pfam PF04237 YjbR 11 102 4.5E-20 T 12-10-2018 IPR007351 Uncharacterised protein YjbR YPK_3852 7aaeb75657213b53e752f3e2b8973b8f 119 Gene3D G3DSA:3.90.1150.30 1 119 2.0E-41 T 12-10-2018 IPR038056 YjbR-like superfamily YPK_0818 8a99478927e5bbdd58be4520f3495d61 362 SUPERFAMILY SSF53955 158 360 9.01E-36 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_0818 8a99478927e5bbdd58be4520f3495d61 362 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 216 244 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 YPK_0818 8a99478927e5bbdd58be4520f3495d61 362 Gene3D G3DSA:1.10.530.10 181 358 4.6E-49 T 12-10-2018 YPK_0818 8a99478927e5bbdd58be4520f3495d61 362 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 5 361 60.613 T 12-10-2018 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 YPK_0818 8a99478927e5bbdd58be4520f3495d61 362 Pfam PF11873 Domain of unknown function (DUF3393) 7 194 1.8E-77 T 12-10-2018 IPR024570 Murein transglycosylase-C, N-terminal YPK_0818 8a99478927e5bbdd58be4520f3495d61 362 Pfam PF01464 Transglycosylase SLT domain 199 320 1.2E-32 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 YPK_0831 84c63588e0997645a50490916c621d02 273 SUPERFAMILY SSF51735 4 162 1.54E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0831 84c63588e0997645a50490916c621d02 273 Gene3D G3DSA:1.10.3730.10 166 273 3.1E-33 T 12-10-2018 YPK_0831 84c63588e0997645a50490916c621d02 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 100 1.4E-18 T 12-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal YPK_0831 84c63588e0997645a50490916c621d02 273 SUPERFAMILY SSF48179 163 271 3.74E-28 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_0831 84c63588e0997645a50490916c621d02 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 247 - T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YPK_0831 84c63588e0997645a50490916c621d02 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 269 2.8E-29 T 12-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YPK_0831 84c63588e0997645a50490916c621d02 273 PIRSF PIRSF000193 3 271 6.6E-76 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YPK_0831 84c63588e0997645a50490916c621d02 273 Gene3D G3DSA:3.40.50.720 2 165 4.8E-49 T 12-10-2018 YPK_0831 84c63588e0997645a50490916c621d02 273 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 269 24.755 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YPK_0831 84c63588e0997645a50490916c621d02 273 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 269 2.4E-70 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 Gene3D G3DSA:2.60.40.10 188 272 2.1E-18 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 58 181 8.7E-40 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 SUPERFAMILY SSF49354 52 181 4.45E-37 T 12-10-2018 IPR008962 PapD-like superfamily YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 Gene3D G3DSA:2.60.40.10 59 181 2.1E-36 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 207 265 1.5E-14 T 12-10-2018 IPR016148 Pili assembly chaperone, C-terminal YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 163 178 1.1E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 107 128 1.1E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 136 153 1.1E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 58 67 1.1E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 PRINTS PR00969 Pili chaperone signature 202 217 1.1E-28 T 12-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 135 152 - T 12-10-2018 IPR018046 Pili assembly chaperone, conserved site YPK_4046 0ea6360e5d9f6f89ec23d049d02e6b83 272 SUPERFAMILY SSF49584 175 267 9.03E-19 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_0507 b6d3802c2ed282cd827a6b689f2f87c2 181 Gene3D G3DSA:2.60.450.10 25 162 5.2E-49 T 12-10-2018 YPK_0507 b6d3802c2ed282cd827a6b689f2f87c2 181 Pfam PF03968 OstA-like protein 35 146 4.8E-28 T 12-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal YPK_0507 b6d3802c2ed282cd827a6b689f2f87c2 181 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 5 165 25.237 T 12-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 YPK_0507 b6d3802c2ed282cd827a6b689f2f87c2 181 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 25 164 1.2E-47 T 12-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 YPK_2161 6285204267e111193cebab88fec238f9 194 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 1.7E-17 T 12-10-2018 IPR000182 GNAT domain YPK_2161 6285204267e111193cebab88fec238f9 194 SUPERFAMILY SSF55729 12 186 2.47E-40 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_2161 6285204267e111193cebab88fec238f9 194 Gene3D G3DSA:3.40.630.30 10 191 2.8E-45 T 12-10-2018 YPK_1323 8da7926aa16d62af5849f2fcd3734a99 169 Gene3D G3DSA:3.40.1420.10 42 169 6.5E-46 T 12-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily YPK_1323 8da7926aa16d62af5849f2fcd3734a99 169 SUPERFAMILY SSF89872 43 168 3.01E-51 T 12-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily YPK_1323 8da7926aa16d62af5849f2fcd3734a99 169 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 52 167 3.0E-50 T 12-10-2018 YPK_1323 8da7926aa16d62af5849f2fcd3734a99 169 PIRSF PIRSF009103 15 169 6.3E-67 T 12-10-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 YPK_1111 3a3755967237d6461217718af0918ef9 316 SUPERFAMILY SSF88713 9 310 1.97E-84 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YPK_1111 3a3755967237d6461217718af0918ef9 316 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 10 309 1.4E-153 T 12-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 YPK_1111 3a3755967237d6461217718af0918ef9 316 Pfam PF01522 Polysaccharide deacetylase 81 167 5.6E-8 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 YPK_1111 3a3755967237d6461217718af0918ef9 316 Gene3D G3DSA:3.20.20.370 2 314 2.2E-98 T 12-10-2018 YPK_0566 a1644f3b8e35830a0abafe88144906ae 582 Gene3D G3DSA:3.60.40.10 313 581 3.6E-9 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 YPK_0566 a1644f3b8e35830a0abafe88144906ae 582 Pfam PF13672 Protein phosphatase 2C 321 566 2.4E-56 T 12-10-2018 YPK_0566 a1644f3b8e35830a0abafe88144906ae 582 SUPERFAMILY SSF81606 328 580 3.01E-10 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 YPK_2998 cd0ebf571459666db9e506de4e8ed379 381 Gene3D G3DSA:2.30.40.10 7 376 4.4E-136 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_2998 cd0ebf571459666db9e506de4e8ed379 381 SUPERFAMILY SSF51556 54 350 2.77E-100 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_2998 cd0ebf571459666db9e506de4e8ed379 381 PIRSF PIRSF038994 1 381 7.7E-116 T 12-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 YPK_2998 cd0ebf571459666db9e506de4e8ed379 381 Gene3D G3DSA:3.20.20.140 55 344 4.4E-136 T 12-10-2018 YPK_2998 cd0ebf571459666db9e506de4e8ed379 381 SUPERFAMILY SSF51338 1 53 2.64E-19 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_2998 cd0ebf571459666db9e506de4e8ed379 381 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 377 2.4E-163 T 12-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 YPK_2998 cd0ebf571459666db9e506de4e8ed379 381 Pfam PF01979 Amidohydrolase family 50 379 1.6E-41 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YPK_3859 8dae59b4c7c41fbf9690060fea491e91 170 Pfam PF01475 Ferric uptake regulator family 21 139 2.7E-13 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 YPK_3859 8dae59b4c7c41fbf9690060fea491e91 170 SUPERFAMILY SSF46785 13 145 3.46E-33 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3859 8dae59b4c7c41fbf9690060fea491e91 170 Gene3D G3DSA:1.10.10.10 2 90 4.1E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3859 8dae59b4c7c41fbf9690060fea491e91 170 Gene3D G3DSA:3.30.1490.190 91 153 4.6E-15 T 12-10-2018 YPK_0041 1bcabcfceff15781d554e34b16605c43 309 Gene3D G3DSA:3.90.1670.10 26 309 9.3E-92 T 12-10-2018 IPR024064 FdhE-like superfamily YPK_0041 1bcabcfceff15781d554e34b16605c43 309 PIRSF PIRSF018296 1 309 1.4E-135 T 12-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 YPK_0041 1bcabcfceff15781d554e34b16605c43 309 SUPERFAMILY SSF144020 26 308 2.62E-95 T 12-10-2018 IPR024064 FdhE-like superfamily YPK_0041 1bcabcfceff15781d554e34b16605c43 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 307 1.7E-120 T 12-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 YPK_0041 1bcabcfceff15781d554e34b16605c43 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 308 50.121 T 12-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 YPK_0041 1bcabcfceff15781d554e34b16605c43 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 23 306 3.4E-114 T 12-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 YPK_2210 1ada0d074ca0c08a8071e307ce11ea58 395 Gene3D G3DSA:3.40.50.2000 15 257 1.3E-22 T 12-10-2018 YPK_2210 1ada0d074ca0c08a8071e307ce11ea58 395 Gene3D G3DSA:3.40.50.2000 258 395 3.7E-21 T 12-10-2018 YPK_2210 1ada0d074ca0c08a8071e307ce11ea58 395 SUPERFAMILY SSF53756 16 377 9.11E-54 T 12-10-2018 YPK_2210 1ada0d074ca0c08a8071e307ce11ea58 395 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 266 374 4.9E-5 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 YPK_0091 81f7fca0c7730009df0ef4e6c1599eb5 326 Pfam PF00005 ABC transporter 24 181 1.4E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0091 81f7fca0c7730009df0ef4e6c1599eb5 326 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0091 81f7fca0c7730009df0ef4e6c1599eb5 326 SUPERFAMILY SSF52540 32 304 4.61E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0091 81f7fca0c7730009df0ef4e6c1599eb5 326 Gene3D G3DSA:3.40.50.300 1 321 4.3E-93 T 12-10-2018 YPK_0091 81f7fca0c7730009df0ef4e6c1599eb5 326 SMART SM00382 32 231 4.0E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0091 81f7fca0c7730009df0ef4e6c1599eb5 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 9.0E-19 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_0091 81f7fca0c7730009df0ef4e6c1599eb5 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 315 3.1E-26 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 YPK_3186 fc05cc45bb5f5c1c88f771eb8be73748 435 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 344 428 1.8E-7 T 12-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 354 2.9E-72 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 Pfam PF00460 Flagella basal body rod protein 6 35 1.4E-5 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 SUPERFAMILY SSF64518 100 551 1.26E-47 T 12-10-2018 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 124 144 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 157 181 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 360 382 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 472 493 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 519 543 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 50 72 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 447 466 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 PRINTS PR01005 Flagellar hook-associated protein signature 260 282 1.1E-83 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 YPK_2416 3f419bffefefa7e3a40519e0dd3be0d1 554 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 493 551 4.6E-6 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_3012 ce71427ebb695bc3377af38697cc35b8 224 Gene3D G3DSA:1.10.3720.10 2 224 1.6E-50 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3012 ce71427ebb695bc3377af38697cc35b8 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 2.5E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3012 ce71427ebb695bc3377af38697cc35b8 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 1.6E-24 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_3012 ce71427ebb695bc3377af38697cc35b8 224 SUPERFAMILY SSF161098 14 209 4.06E-39 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0347 3146f544f7a2be3a14eca4f0ff072b85 681 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 162 614 2.0E-222 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YPK_0347 3146f544f7a2be3a14eca4f0ff072b85 681 Pfam PF13667 ThiC-associated domain 42 123 4.3E-34 T 12-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YPK_0347 3146f544f7a2be3a14eca4f0ff072b85 681 Pfam PF01964 Radical SAM ThiC family 163 611 5.5E-199 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YPK_0347 3146f544f7a2be3a14eca4f0ff072b85 681 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 162 615 99.253 T 12-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YPK_0347 3146f544f7a2be3a14eca4f0ff072b85 681 Gene3D G3DSA:3.20.20.540 233 546 1.6E-152 T 12-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 YPK_2539 051d6a56cd4e903be9e5ec56532c366c 753 SUPERFAMILY SSF56935 87 753 2.0E-111 T 12-10-2018 YPK_2539 051d6a56cd4e903be9e5ec56532c366c 753 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 736 753 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site YPK_2539 051d6a56cd4e903be9e5ec56532c366c 753 Gene3D G3DSA:2.170.130.10 72 204 3.4E-37 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_2539 051d6a56cd4e903be9e5ec56532c366c 753 Pfam PF07715 TonB-dependent Receptor Plug Domain 95 197 1.2E-14 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_2539 051d6a56cd4e903be9e5ec56532c366c 753 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 97 753 8.7E-101 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 YPK_2539 051d6a56cd4e903be9e5ec56532c366c 753 Pfam PF00593 TonB dependent receptor 283 752 3.1E-43 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_2539 051d6a56cd4e903be9e5ec56532c366c 753 Gene3D G3DSA:2.40.170.20 205 753 8.3E-153 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_0948 8648d78151eecbc4f1daf9c9feff25de 66 Gene3D G3DSA:1.10.238.160 5 63 4.0E-6 T 12-10-2018 YPK_0948 8648d78151eecbc4f1daf9c9feff25de 66 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 6 54 1.9E-18 T 12-10-2018 IPR010260 DNA-binding transcriptional activator AlpA YPK_0948 8648d78151eecbc4f1daf9c9feff25de 66 SUPERFAMILY SSF46955 6 63 3.66E-5 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily YPK_1689 2521769b58c174cfbf4f068a012fbbcb 268 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 262 3.5E-117 T 12-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 YPK_1689 2521769b58c174cfbf4f068a012fbbcb 268 SUPERFAMILY SSF56752 1 256 1.57E-68 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 YPK_1689 2521769b58c174cfbf4f068a012fbbcb 268 Pfam PF01063 Amino-transferase class IV 24 247 9.3E-51 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 YPK_1689 2521769b58c174cfbf4f068a012fbbcb 268 Gene3D G3DSA:3.20.10.10 121 265 4.2E-51 T 12-10-2018 YPK_1689 2521769b58c174cfbf4f068a012fbbcb 268 Gene3D G3DSA:3.30.470.10 1 108 2.5E-28 T 12-10-2018 YPK_1689 2521769b58c174cfbf4f068a012fbbcb 268 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 12-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 YPK_3450 8d3dd72aa8614350606ffb75617c6a22 41 Gene3D G3DSA:3.40.50.150 2 34 7.4E-7 T 12-10-2018 YPK_3450 8d3dd72aa8614350606ffb75617c6a22 41 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 18 28 - T 12-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site YPK_1287 c68971beb1a3e6772b9270d197e7e147 454 SUPERFAMILY SSF51126 121 448 5.46E-16 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_1287 c68971beb1a3e6772b9270d197e7e147 454 Pfam PF03212 Pertactin 364 446 1.5E-9 T 12-10-2018 IPR004899 Pertactin, central region YPK_1287 c68971beb1a3e6772b9270d197e7e147 454 Gene3D G3DSA:2.160.20.20 16 449 2.0E-21 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_1386 2a676b788b59f78c675f40622bfdb390 88 Hamap MF_02200 Chaperone NapD [napD]. 6 83 17.751 T 12-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly YPK_1386 2a676b788b59f78c675f40622bfdb390 88 Pfam PF03927 NapD protein 6 81 2.6E-25 T 12-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly YPK_1386 2a676b788b59f78c675f40622bfdb390 88 Gene3D G3DSA:3.30.70.920 6 76 8.8E-26 T 12-10-2018 YPK_2406 5e33ec32ccbbef101f9de8233a95f1b6 199 SUPERFAMILY SSF56399 9 100 1.51E-15 T 12-10-2018 YPK_0234 55bf78bcff0c084ef19b3d5c5a098337 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 6.1E-37 T 12-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 YPK_0234 55bf78bcff0c084ef19b3d5c5a098337 108 SUPERFAMILY SSF50022 1 107 2.14E-37 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YPK_0234 55bf78bcff0c084ef19b3d5c5a098337 108 Gene3D G3DSA:2.102.10.10 1 108 1.9E-33 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 YPK_0234 55bf78bcff0c084ef19b3d5c5a098337 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 107 5.7E-41 T 12-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 YPK_4096 565a2fd799ede53726702e8f6e5120c2 105 Hamap MF_00744 Met repressor [metJ]. 1 105 40.23 T 12-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 YPK_4096 565a2fd799ede53726702e8f6e5120c2 105 Gene3D G3DSA:1.10.140.10 2 105 7.7E-63 T 12-10-2018 IPR023453 Methionine repressor MetJ domain superfamily YPK_4096 565a2fd799ede53726702e8f6e5120c2 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 5.3E-58 T 12-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 YPK_4096 565a2fd799ede53726702e8f6e5120c2 105 SUPERFAMILY SSF47598 2 105 3.78E-57 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YPK_4096 565a2fd799ede53726702e8f6e5120c2 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 8.0E-49 T 12-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 YPK_0011 916c25258aaaaf89ccfadd591a81b5e2 137 Gene3D G3DSA:2.60.40.790 33 137 2.1E-19 T 12-10-2018 IPR008978 HSP20-like chaperone YPK_0011 916c25258aaaaf89ccfadd591a81b5e2 137 SUPERFAMILY SSF49764 30 137 9.77E-20 T 12-10-2018 IPR008978 HSP20-like chaperone YPK_0011 916c25258aaaaf89ccfadd591a81b5e2 137 Hamap MF_02000 Small heat shock protein IbpA [ibpA]. 1 137 44.274 T 12-10-2018 IPR023728 Small heat shock protein IbpA YPK_0011 916c25258aaaaf89ccfadd591a81b5e2 137 Pfam PF00011 Hsp20/alpha crystallin family 42 137 5.6E-21 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain YPK_2401 8e39ae0e1cfe7621da0539c1a9f85281 178 Pfam PF04347 Flagellar biosynthesis protein, FliO 82 172 1.2E-21 T 12-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 YPK_2401 8e39ae0e1cfe7621da0539c1a9f85281 178 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 70 138 1.6E-22 T 12-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 YPK_2910 4fad80d31b6b84db23e333021bca3b43 418 Pfam PF03825 Nucleoside H+ symporter 1 406 3.1E-159 T 12-10-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 YPK_2910 4fad80d31b6b84db23e333021bca3b43 418 Gene3D G3DSA:1.20.1250.20 6 186 4.9E-13 T 12-10-2018 YPK_2910 4fad80d31b6b84db23e333021bca3b43 418 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 418 7.0E-186 T 12-10-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 YPK_2910 4fad80d31b6b84db23e333021bca3b43 418 Gene3D G3DSA:1.20.1250.20 199 416 2.4E-31 T 12-10-2018 YPK_2910 4fad80d31b6b84db23e333021bca3b43 418 SUPERFAMILY SSF103473 9 405 2.09E-35 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0943 7394dc45d3159623510ad39aad1fecfa 697 Pfam PF17289 Terminase RNaseH-like domain 429 587 1.7E-26 T 12-10-2018 IPR035421 Terminase, large subunit gp17-like YPK_0943 7394dc45d3159623510ad39aad1fecfa 697 Gene3D G3DSA:3.40.50.300 123 324 1.8E-19 T 12-10-2018 YPK_0943 7394dc45d3159623510ad39aad1fecfa 697 Pfam PF03237 Terminase-like family 182 401 1.0E-43 T 12-10-2018 IPR004921 Terminase large subunit, T4likevirus-type YPK_0943 7394dc45d3159623510ad39aad1fecfa 697 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 14 66 1.9E-14 T 12-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 YPK_0943 7394dc45d3159623510ad39aad1fecfa 697 Gene3D G3DSA:3.30.420.240 399 588 1.9E-13 T 12-10-2018 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 64 139 4.5E-12 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain YPK_2561 7ad277d3358ebe0867566999b11fba33 294 PIRSF PIRSF006334 14 294 1.8E-112 T 12-10-2018 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 277 1.4E-46 T 12-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 SUPERFAMILY SSF53927 1 149 1.07E-42 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 Gene3D G3DSA:3.40.140.10 29 179 2.5E-43 T 12-10-2018 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 31 285 2.8E-88 T 12-10-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 SUPERFAMILY SSF53927 154 290 3.96E-40 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 Hamap MF_01558 Cytidine deaminase [cdd]. 1 293 51.055 T 12-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 YPK_2561 7ad277d3358ebe0867566999b11fba33 294 Gene3D G3DSA:3.40.140.10 180 294 4.8E-28 T 12-10-2018 YPK_3222 fff76330dd396e112180d56c8fd59c15 588 Pfam PF00664 ABC transporter transmembrane region 21 291 7.0E-39 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 YPK_3222 fff76330dd396e112180d56c8fd59c15 588 SUPERFAMILY SSF52540 324 572 1.51E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3222 fff76330dd396e112180d56c8fd59c15 588 SUPERFAMILY SSF90123 7 319 1.31E-71 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_3222 fff76330dd396e112180d56c8fd59c15 588 Gene3D G3DSA:1.20.1560.10 2 319 9.4E-76 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 YPK_3222 fff76330dd396e112180d56c8fd59c15 588 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3222 fff76330dd396e112180d56c8fd59c15 588 SMART SM00382 361 547 2.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3222 fff76330dd396e112180d56c8fd59c15 588 Gene3D G3DSA:3.40.50.300 328 585 5.1E-77 T 12-10-2018 YPK_3222 fff76330dd396e112180d56c8fd59c15 588 Pfam PF00005 ABC transporter 352 500 2.3E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0965 541cb2ca8d04c5401be3c28232708063 342 Pfam PF02653 Branched-chain amino acid transport system / permease component 62 334 4.7E-50 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1085 fc351bc81ac394254052a877243d2591 105 Pfam PF00034 Cytochrome c 34 104 2.7E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_1085 fc351bc81ac394254052a877243d2591 105 SUPERFAMILY SSF46626 33 104 4.8E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YPK_1085 fc351bc81ac394254052a877243d2591 105 Gene3D G3DSA:1.10.760.10 22 105 1.2E-25 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YPK_1085 fc351bc81ac394254052a877243d2591 105 PRINTS PR00605 Class IC cytochrome C signature 78 100 7.4E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 YPK_1085 fc351bc81ac394254052a877243d2591 105 PRINTS PR00605 Class IC cytochrome C signature 33 44 7.4E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 YPK_2214 fbd68b02658884d808298accadfddc54 428 TIGRFAM TIGR02304 aden_form_hyp: putative adenylate-forming enzyme 3 424 1.2E-176 T 12-10-2018 IPR012685 Conserved hypothetical protein CHP02304, F390 synthetase-related YPK_2214 fbd68b02658884d808298accadfddc54 428 Gene3D G3DSA:3.40.50.12780 9 325 2.0E-38 T 12-10-2018 YPK_0304 4d06cdcbdaa96a508fb6a347610bdc61 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 4.7E-22 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0304 4d06cdcbdaa96a508fb6a347610bdc61 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.971 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0304 4d06cdcbdaa96a508fb6a347610bdc61 38 SUPERFAMILY SSF57840 1 38 5.49E-17 T 12-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0304 4d06cdcbdaa96a508fb6a347610bdc61 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0304 4d06cdcbdaa96a508fb6a347610bdc61 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 12-10-2018 YPK_0304 4d06cdcbdaa96a508fb6a347610bdc61 38 Pfam PF00444 Ribosomal protein L36 1 38 1.7E-20 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_4004 a28cc7c26b69dea1ae8422ab35610ed2 276 SUPERFAMILY SSF51621 3 197 3.77E-85 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_4004 a28cc7c26b69dea1ae8422ab35610ed2 276 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 9 274 2.9E-133 T 12-10-2018 IPR009215 TIM-barrel domain, IGPS-like YPK_4004 a28cc7c26b69dea1ae8422ab35610ed2 276 PIRSF PIRSF034452 1 276 1.2E-166 T 12-10-2018 IPR009215 TIM-barrel domain, IGPS-like YPK_4004 a28cc7c26b69dea1ae8422ab35610ed2 276 Gene3D G3DSA:3.20.20.70 1 252 2.0E-121 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3167 05486c369ca199bfe448a3077bf512c0 159 Pfam PF04073 Aminoacyl-tRNA editing domain 31 145 8.7E-24 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 YPK_3167 05486c369ca199bfe448a3077bf512c0 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 3.3E-54 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YPK_3167 05486c369ca199bfe448a3077bf512c0 159 SUPERFAMILY SSF55826 2 155 5.89E-44 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 YPK_3167 05486c369ca199bfe448a3077bf512c0 159 Gene3D G3DSA:3.90.960.10 1 159 7.7E-62 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 YPK_3167 05486c369ca199bfe448a3077bf512c0 159 PIRSF PIRSF006181 1 159 2.1E-54 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 9.7E-31 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 12-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.1E-19 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.1E-19 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.1E-19 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 6.1E-28 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 Gene3D G3DSA:3.30.1340.10 1 85 5.7E-35 T 12-10-2018 IPR035895 HPr-like superfamily YPK_1428 90698f324e7b2f882bc5dfbfdbc4a362 85 SUPERFAMILY SSF55594 1 82 7.59E-27 T 12-10-2018 IPR035895 HPr-like superfamily YPK_3153 a48298f45699905d85ede1289c3be480 164 SUPERFAMILY SSF50891 1 162 2.48E-59 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily YPK_3153 a48298f45699905d85ede1289c3be480 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 161 8.2E-48 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YPK_3153 a48298f45699905d85ede1289c3be480 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 YPK_3153 a48298f45699905d85ede1289c3be480 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 2.1E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YPK_3153 a48298f45699905d85ede1289c3be480 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 2.1E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YPK_3153 a48298f45699905d85ede1289c3be480 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 2.1E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 YPK_3153 a48298f45699905d85ede1289c3be480 164 Gene3D G3DSA:2.40.100.10 1 164 8.0E-72 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily YPK_3153 a48298f45699905d85ede1289c3be480 164 PIRSF PIRSF001467 1 164 3.4E-29 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 YPK_3767 7d38206f9287b25ac9b17ec19e539a06 175 SUPERFAMILY SSF50324 3 175 4.45E-67 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YPK_3767 7d38206f9287b25ac9b17ec19e539a06 175 Pfam PF00719 Inorganic pyrophosphatase 18 173 2.6E-55 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YPK_3767 7d38206f9287b25ac9b17ec19e539a06 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YPK_3767 7d38206f9287b25ac9b17ec19e539a06 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.024 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YPK_3767 7d38206f9287b25ac9b17ec19e539a06 175 Gene3D G3DSA:3.90.80.10 2 175 1.4E-70 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 YPK_1849 d32d6264dd81fc78374439dd334bbbb7 248 SUPERFAMILY SSF52540 2 231 1.0E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1849 d32d6264dd81fc78374439dd334bbbb7 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 5.6E-112 T 12-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 YPK_1849 d32d6264dd81fc78374439dd334bbbb7 248 Gene3D G3DSA:3.40.50.300 1 248 2.1E-65 T 12-10-2018 YPK_1849 d32d6264dd81fc78374439dd334bbbb7 248 SMART SM00382 26 223 2.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1849 d32d6264dd81fc78374439dd334bbbb7 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1849 d32d6264dd81fc78374439dd334bbbb7 248 Pfam PF00005 ABC transporter 17 172 2.2E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0202 1d5410b25402c123893907d40ecba27d 133 Pfam PF06252 Protein of unknown function (DUF1018) 18 129 1.2E-22 T 12-10-2018 IPR009363 Bacteriophage Mu, Gp16 YPK_2408 e2249611d39586f559d9f121058673e1 340 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 330 2.6E-40 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_0434 b3691c342d24eb3de10b632daffa5095 317 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 309 2.9E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_2304 c33fb8700b540ae8e83de12d7920f2d6 154 Pfam PF06995 Phage P2 GpU 6 125 4.7E-44 T 12-10-2018 IPR009734 Myoviridae, GpU YPK_2304 c33fb8700b540ae8e83de12d7920f2d6 154 PIRSF PIRSF029208 1 150 5.7E-60 T 12-10-2018 IPR016912 Bacteriophage P2, GpU YPK_1701 6be613777a2c2558c790c84c287d8c3e 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 50.987 T 12-10-2018 IPR022987 Uncharacterised protein family UPF0227 YPK_1701 6be613777a2c2558c790c84c287d8c3e 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 1.7E-71 T 12-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA YPK_1701 6be613777a2c2558c790c84c287d8c3e 180 SUPERFAMILY SSF53474 1 176 4.39E-8 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1701 6be613777a2c2558c790c84c287d8c3e 180 Gene3D G3DSA:3.40.50.1820 1 179 1.2E-18 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1524 2d36819f758e73ab79e80be1eedd24d8 305 SUPERFAMILY SSF103481 186 283 1.01E-15 T 12-10-2018 YPK_1524 2d36819f758e73ab79e80be1eedd24d8 305 SUPERFAMILY SSF103481 42 138 4.97E-10 T 12-10-2018 YPK_1524 2d36819f758e73ab79e80be1eedd24d8 305 Pfam PF00892 EamA-like transporter family 4 135 3.4E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1524 2d36819f758e73ab79e80be1eedd24d8 305 Pfam PF00892 EamA-like transporter family 150 280 2.8E-21 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1089 0a8249f1b57856e4b0fdbfb8cd9afd2f 146 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 29 45 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YPK_1089 0a8249f1b57856e4b0fdbfb8cd9afd2f 146 Gene3D G3DSA:3.30.160.20 9 146 2.5E-36 T 12-10-2018 YPK_1089 0a8249f1b57856e4b0fdbfb8cd9afd2f 146 SUPERFAMILY SSF75620 15 123 1.84E-13 T 12-10-2018 YPK_1089 0a8249f1b57856e4b0fdbfb8cd9afd2f 146 Pfam PF00472 RF-1 domain 16 137 5.2E-22 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 YPK_3264 a3edcc49e3e08b50ac38c673e0da7702 374 Gene3D G3DSA:3.20.20.105 1 367 2.2E-170 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YPK_3264 a3edcc49e3e08b50ac38c673e0da7702 374 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 368 3.3E-190 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YPK_3264 a3edcc49e3e08b50ac38c673e0da7702 374 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 367 1.4E-179 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YPK_3264 a3edcc49e3e08b50ac38c673e0da7702 374 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 2.1E-93 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YPK_3264 a3edcc49e3e08b50ac38c673e0da7702 374 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 57.422 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YPK_3264 a3edcc49e3e08b50ac38c673e0da7702 374 SUPERFAMILY SSF51713 2 364 2.88E-163 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 YPK_1410 434b7f2b577874e36cc9be67b7fb69fe 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 15 275 2.0E-106 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 YPK_1410 434b7f2b577874e36cc9be67b7fb69fe 291 Gene3D G3DSA:1.10.3720.10 20 276 3.9E-59 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1410 434b7f2b577874e36cc9be67b7fb69fe 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 267 5.7E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1410 434b7f2b577874e36cc9be67b7fb69fe 291 SUPERFAMILY SSF161098 16 268 2.09E-52 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1410 434b7f2b577874e36cc9be67b7fb69fe 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 276 1.2E-113 T 12-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 YPK_2911 ccf408a5e590a0f4e672fa78c72c9a92 287 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 35 281 1.5E-103 T 12-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 YPK_2911 ccf408a5e590a0f4e672fa78c72c9a92 287 TIGRFAM TIGR01699 XAPA: xanthosine phosphorylase 35 282 4.6E-165 T 12-10-2018 IPR010943 Xanthosine phosphorylase GO:0004731|GO:0005737|GO:0055086 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 YPK_2911 ccf408a5e590a0f4e672fa78c72c9a92 287 TIGRFAM TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific 35 280 8.5E-89 T 12-10-2018 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 YPK_2911 ccf408a5e590a0f4e672fa78c72c9a92 287 Gene3D G3DSA:3.40.50.1580 1 287 2.0E-114 T 12-10-2018 YPK_2911 ccf408a5e590a0f4e672fa78c72c9a92 287 Pfam PF01048 Phosphorylase superfamily 36 282 1.9E-41 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YPK_2911 ccf408a5e590a0f4e672fa78c72c9a92 287 PIRSF PIRSF000477 7 284 1.6E-111 T 12-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 YPK_2911 ccf408a5e590a0f4e672fa78c72c9a92 287 SUPERFAMILY SSF53167 20 283 1.57E-81 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YPK_2437 5b2acd55de23bff5385453ae4cdd0754 128 SUPERFAMILY SSF81296 30 128 3.01E-27 T 12-10-2018 IPR014756 Immunoglobulin E-set YPK_2437 5b2acd55de23bff5385453ae4cdd0754 128 Gene3D G3DSA:2.60.40.1220 30 128 4.1E-27 T 12-10-2018 YPK_2437 5b2acd55de23bff5385453ae4cdd0754 128 Pfam PF04234 CopC domain 31 127 3.0E-24 T 12-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 YPK_0218 b2ef5bc33b9dace6cd31ab28c0001e82 187 Gene3D G3DSA:1.10.260.40 15 84 1.6E-10 T 12-10-2018 YPK_0218 b2ef5bc33b9dace6cd31ab28c0001e82 187 SUPERFAMILY SSF47413 16 78 4.42E-6 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0462 4ead6a93280a81ddd9b2ee49ec5edf9d 366 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 38 366 55.613 T 12-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 YPK_0462 4ead6a93280a81ddd9b2ee49ec5edf9d 366 Gene3D G3DSA:3.90.420.10 96 366 1.0E-119 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 YPK_0462 4ead6a93280a81ddd9b2ee49ec5edf9d 366 SUPERFAMILY SSF56524 103 362 8.37E-93 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 YPK_0462 4ead6a93280a81ddd9b2ee49ec5edf9d 366 Pfam PF00174 Oxidoreductase molybdopterin binding domain 140 299 3.0E-28 T 12-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 Gene3D G3DSA:3.30.70.20 99 166 3.7E-10 T 12-10-2018 YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 39 50 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 Pfam PF13187 4Fe-4S dicluster domain 39 84 1.1E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 27 164 23.345 T 12-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 Pfam PF12838 4Fe-4S dicluster domain 110 157 4.3E-8 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 SUPERFAMILY SSF54862 33 161 6.91E-20 T 12-10-2018 YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 6 159 1.1E-46 T 12-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 YPK_1385 3c03ff1a8a29407ae5654afd5049cab3 167 Gene3D G3DSA:3.30.70.20 37 87 7.3E-7 T 12-10-2018 YPK_0342 65efb76c51b851bfb9c158c2bf212ae9 376 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 259 361 1.2E-23 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YPK_0342 65efb76c51b851bfb9c158c2bf212ae9 376 Pfam PF04055 Radical SAM superfamily 83 220 2.3E-9 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_0342 65efb76c51b851bfb9c158c2bf212ae9 376 SMART SM00876 259 362 4.6E-32 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 YPK_0342 65efb76c51b851bfb9c158c2bf212ae9 376 Gene3D G3DSA:3.20.20.70 14 366 4.2E-107 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0342 65efb76c51b851bfb9c158c2bf212ae9 376 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 5 369 1.4E-165 T 12-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 YPK_0342 65efb76c51b851bfb9c158c2bf212ae9 376 SUPERFAMILY SSF102114 38 364 1.44E-54 T 12-10-2018 YPK_1220 380ebbe7dd8a2b031686d129397c9f4d 183 Pfam PF03592 Terminase small subunit 6 155 1.5E-31 T 12-10-2018 IPR005335 Terminase small subunit GO:0006323 YPK_1220 380ebbe7dd8a2b031686d129397c9f4d 183 Gene3D G3DSA:1.10.10.1400 1 62 6.1E-19 T 12-10-2018 IPR038713 Terminase small subunit, N-terminal domain superfamily YPK_0650 bd87ce7bc8f06d5d914f528e3363c602 260 PIRSF PIRSF006157 1 260 3.9E-92 T 12-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 YPK_0650 bd87ce7bc8f06d5d914f528e3363c602 260 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 9 257 6.1E-33 T 12-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 YPK_0650 bd87ce7bc8f06d5d914f528e3363c602 260 Gene3D G3DSA:3.40.830.10 1 260 6.9E-94 T 12-10-2018 YPK_0650 bd87ce7bc8f06d5d914f528e3363c602 260 SUPERFAMILY SSF53213 5 260 4.97E-92 T 12-10-2018 YPK_4111 281eeb45ea6cb9f5ad9c36d112b83061 79 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 18.09 T 12-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 YPK_4111 281eeb45ea6cb9f5ad9c36d112b83061 79 Gene3D G3DSA:1.20.5.340 1 79 5.7E-33 T 12-10-2018 YPK_4111 281eeb45ea6cb9f5ad9c36d112b83061 79 Pfam PF06005 Cell division protein ZapB 1 78 4.2E-28 T 12-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 YPK_0295 138f8966827b522aff2eefaac3f66634 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 6.0E-41 T 12-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0295 138f8966827b522aff2eefaac3f66634 179 Pfam PF00281 Ribosomal protein L5 24 80 1.4E-28 T 12-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0295 138f8966827b522aff2eefaac3f66634 179 Gene3D G3DSA:3.30.1440.10 1 179 3.7E-81 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0295 138f8966827b522aff2eefaac3f66634 179 SUPERFAMILY SSF55282 4 179 7.53E-79 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0295 138f8966827b522aff2eefaac3f66634 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.604 T 12-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0295 138f8966827b522aff2eefaac3f66634 179 PIRSF PIRSF002161 1 179 6.2E-66 T 12-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PIRSF PIRSF000724 1 387 3.6E-133 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 Pfam PF00162 Phosphoglycerate kinase 6 373 5.6E-140 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 2.6E-82 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 39.332 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 Gene3D G3DSA:3.40.50.1260 165 373 2.0E-155 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 Gene3D G3DSA:3.40.50.1260 10 378 2.0E-155 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 SUPERFAMILY SSF53748 3 383 1.18E-144 T 12-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_0852 2ae67bd6e19726b980a4684d810e7b8b 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 12-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 YPK_2366 c3c83e001fbc4732533628742d226ce8 282 TIGRFAM TIGR00145 TIGR00145: FTR1 family protein 1 263 3.1E-91 T 12-10-2018 IPR005217 Iron permease FTR1-like GO:0005381|GO:0005886|GO:0033573|GO:0034755 YPK_2366 c3c83e001fbc4732533628742d226ce8 282 Pfam PF03239 Iron permease FTR1 family 1 259 2.1E-68 T 12-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 YPK_1337 9b754b735ac40e04ab51f4ad26656e65 421 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 221 409 4.1E-7 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1337 9b754b735ac40e04ab51f4ad26656e65 421 Gene3D G3DSA:1.10.3720.10 156 419 1.3E-48 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1337 9b754b735ac40e04ab51f4ad26656e65 421 SUPERFAMILY SSF161098 195 412 4.97E-43 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 Pfam PF00293 NUDIX domain 6 124 5.7E-21 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 Gene3D G3DSA:3.90.79.10 1 128 1.4E-38 T 12-10-2018 YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 SUPERFAMILY SSF55811 1 126 5.69E-39 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.6E-9 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.6E-9 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 PRINTS PR01401 Mutator MutT protein signature 77 90 1.5E-10 T 12-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 PRINTS PR01401 Mutator MutT protein signature 2 23 1.5E-10 T 12-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 YPK_3508 7ef68f24bf10ee3b5d60bc250413e543 128 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 127 1.1E-50 T 12-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 YPK_1212 4d6706afb016b617436e97133d9030ca 725 Pfam PF05272 Virulence-associated protein E 418 616 3.1E-40 T 12-10-2018 IPR007936 Virulence-associated E YPK_0293 13b85a28b0b4b309ba6e7945e5bc55a1 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 27.55 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 YPK_0293 13b85a28b0b4b309ba6e7945e5bc55a1 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 6.8E-55 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 YPK_0293 13b85a28b0b4b309ba6e7945e5bc55a1 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 5.0E-60 T 12-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 YPK_0293 13b85a28b0b4b309ba6e7945e5bc55a1 123 SUPERFAMILY SSF50193 2 122 1.57E-51 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0293 13b85a28b0b4b309ba6e7945e5bc55a1 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 12-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0293 13b85a28b0b4b309ba6e7945e5bc55a1 123 Gene3D G3DSA:2.40.150.20 1 123 2.9E-57 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0293 13b85a28b0b4b309ba6e7945e5bc55a1 123 SMART SM01374 1 123 2.8E-86 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 SMART SM00344 2 111 4.8E-38 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 Gene3D G3DSA:1.10.10.10 3 54 5.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 SUPERFAMILY SSF46785 1 61 1.63E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 Gene3D G3DSA:3.30.70.920 55 139 1.3E-24 T 12-10-2018 YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 6.1E-16 T 12-10-2018 YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 8.3E-10 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 8.3E-10 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 SUPERFAMILY SSF54909 62 151 1.27E-21 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_3223 24ca6b4e34def4dc71620dabe055675a 153 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 1.0E-21 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain YPK_2653 72e2c11b3421f3a80ce7600f89cb8355 182 SUPERFAMILY SSF55166 66 182 1.07E-30 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_2653 72e2c11b3421f3a80ce7600f89cb8355 182 Gene3D G3DSA:3.30.1380.10 60 182 2.2E-11 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_2653 72e2c11b3421f3a80ce7600f89cb8355 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 1.4E-60 T 12-10-2018 IPR010275 Protein of unknown function DUF882 YPK_0515 5f5ddb2b6235c3518023b5c37c15cf47 207 Gene3D G3DSA:3.10.450.710 21 201 7.7E-41 T 12-10-2018 YPK_0515 5f5ddb2b6235c3518023b5c37c15cf47 207 Pfam PF05494 MlaC protein 31 195 8.5E-52 T 12-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YPK_0515 5f5ddb2b6235c3518023b5c37c15cf47 207 PIRSF PIRSF004649 1 207 2.6E-58 T 12-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 13 282 32.183 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 Pfam PF00288 GHMP kinases N terminal domain 98 155 9.4E-11 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 Gene3D G3DSA:3.30.70.890 172 290 1.0E-26 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 Pfam PF08544 GHMP kinases C terminal 216 267 1.1E-5 T 12-10-2018 IPR013750 GHMP kinase, C-terminal domain YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 13 287 3.8E-108 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 PIRSF PIRSF010376 11 290 8.7E-85 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 SUPERFAMILY SSF55060 174 288 8.63E-36 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 SUPERFAMILY SSF54211 14 169 9.87E-47 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2182 9fb7b194f3d914d42822d918ebcd5569 310 Gene3D G3DSA:3.30.230.10 12 170 1.1E-55 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_3678 80832d8c5fe80fbfa6f86f99a27e29c2 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 345 1.3E-75 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 YPK_3678 80832d8c5fe80fbfa6f86f99a27e29c2 364 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 348 1.0E-115 T 12-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 YPK_1841 dadf1e4310a03f974d1cf604e27e27b2 348 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 5.2E-169 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YPK_1841 dadf1e4310a03f974d1cf604e27e27b2 348 SUPERFAMILY SSF51569 7 347 1.28E-131 T 12-10-2018 YPK_1841 dadf1e4310a03f974d1cf604e27e27b2 348 Gene3D G3DSA:3.20.20.70 1 348 1.0E-153 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1841 dadf1e4310a03f974d1cf604e27e27b2 348 PIRSF PIRSF001361 1 348 7.3E-156 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 YPK_1841 dadf1e4310a03f974d1cf604e27e27b2 348 Pfam PF00793 DAHP synthetase I family 41 337 6.1E-102 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 YPK_1552 d8cb932fc38853eddc47e2018fc54b18 151 Pfam PF04217 Protein of unknown function, DUF412 11 149 1.2E-58 T 12-10-2018 IPR007334 Uncharacterised protein family UPF0208 YPK_1552 d8cb932fc38853eddc47e2018fc54b18 151 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 9 151 35.795 T 12-10-2018 IPR007334 Uncharacterised protein family UPF0208 YPK_3717 855a64ba26f72554917b8c431d2d59e5 468 Gene3D G3DSA:2.20.200.10 96 350 3.2E-132 T 12-10-2018 YPK_3717 855a64ba26f72554917b8c431d2d59e5 468 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 461 6.1E-112 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 YPK_3717 855a64ba26f72554917b8c431d2d59e5 468 SUPERFAMILY SSF56954 2 462 1.31E-104 T 12-10-2018 YPK_3717 855a64ba26f72554917b8c431d2d59e5 468 Gene3D G3DSA:1.20.1600.10 50 461 3.2E-132 T 12-10-2018 YPK_3717 855a64ba26f72554917b8c431d2d59e5 468 Pfam PF02321 Outer membrane efflux protein 280 459 1.7E-26 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YPK_3717 855a64ba26f72554917b8c431d2d59e5 468 Pfam PF02321 Outer membrane efflux protein 60 250 7.8E-27 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 YPK_0555 6d2509aa3fcf597c275c049b4a9347fe 483 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 203 458 8.7E-70 T 12-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 YPK_0555 6d2509aa3fcf597c275c049b4a9347fe 483 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 172 6.5E-28 T 12-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_0555 6d2509aa3fcf597c275c049b4a9347fe 483 Gene3D G3DSA:3.40.50.720 3 265 2.6E-48 T 12-10-2018 YPK_0555 6d2509aa3fcf597c275c049b4a9347fe 483 SUPERFAMILY SSF51735 2 263 2.09E-65 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0555 6d2509aa3fcf597c275c049b4a9347fe 483 Gene3D G3DSA:1.10.1040.10 272 483 2.8E-61 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_0555 6d2509aa3fcf597c275c049b4a9347fe 483 SUPERFAMILY SSF48179 273 482 3.74E-51 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_3530 1f96196d9ba77489c0050e51c6b150e1 164 Pfam PF01842 ACT domain 5 69 7.1E-15 T 12-10-2018 IPR002912 ACT domain YPK_3530 1f96196d9ba77489c0050e51c6b150e1 164 Gene3D G3DSA:3.30.70.1150 81 158 5.7E-27 T 12-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal YPK_3530 1f96196d9ba77489c0050e51c6b150e1 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 77 7.0E-37 T 12-10-2018 YPK_3530 1f96196d9ba77489c0050e51c6b150e1 164 Pfam PF10369 Small subunit of acetolactate synthase 85 159 1.2E-23 T 12-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YPK_3530 1f96196d9ba77489c0050e51c6b150e1 164 SUPERFAMILY SSF55021 3 75 1.04E-21 T 12-10-2018 YPK_3530 1f96196d9ba77489c0050e51c6b150e1 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 3 160 6.4E-66 T 12-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 YPK_3530 1f96196d9ba77489c0050e51c6b150e1 164 Gene3D G3DSA:3.30.70.260 1 80 1.2E-34 T 12-10-2018 YPK_3530 1f96196d9ba77489c0050e51c6b150e1 164 SUPERFAMILY SSF55021 80 163 5.8E-25 T 12-10-2018 YPK_0100 1c44f2f1110680de2520978ea46b8363 499 SUPERFAMILY SSF63411 29 240 2.62E-27 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YPK_0100 1c44f2f1110680de2520978ea46b8363 499 Gene3D G3DSA:3.30.830.10 8 256 8.0E-53 T 12-10-2018 YPK_0100 1c44f2f1110680de2520978ea46b8363 499 Pfam PF05193 Peptidase M16 inactive domain 201 378 7.0E-17 T 12-10-2018 IPR007863 Peptidase M16, C-terminal YPK_0100 1c44f2f1110680de2520978ea46b8363 499 Pfam PF00675 Insulinase (Peptidase family M16) 51 173 5.8E-11 T 12-10-2018 IPR011765 Peptidase M16, N-terminal YPK_0100 1c44f2f1110680de2520978ea46b8363 499 Gene3D G3DSA:3.30.830.10 257 472 4.3E-104 T 12-10-2018 YPK_0100 1c44f2f1110680de2520978ea46b8363 499 SUPERFAMILY SSF63411 342 458 8.56E-7 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 YPK_1698 a6ed23fbf037c1f6d7640a36ef16c13d 191 Pfam PF13036 Peptidoglycan-synthase activator LpoB 51 188 1.7E-34 T 12-10-2018 IPR014094 Penicillin-binding protein activator LpoB YPK_1698 a6ed23fbf037c1f6d7640a36ef16c13d 191 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 2 190 9.2E-59 T 12-10-2018 IPR014094 Penicillin-binding protein activator LpoB YPK_1698 a6ed23fbf037c1f6d7640a36ef16c13d 191 Gene3D G3DSA:3.40.50.10610 55 191 2.1E-53 T 12-10-2018 YPK_1698 a6ed23fbf037c1f6d7640a36ef16c13d 191 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 1 190 35.632 T 12-10-2018 IPR014094 Penicillin-binding protein activator LpoB YPK_2220 30d84be8a33f9cca79b032f915f43d45 456 Gene3D G3DSA:2.30.40.10 9 433 2.0E-182 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_2220 30d84be8a33f9cca79b032f915f43d45 456 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 453 5.7E-228 T 12-10-2018 IPR010252 Formiminoglutamate deiminase YPK_2220 30d84be8a33f9cca79b032f915f43d45 456 Pfam PF01979 Amidohydrolase family 48 429 8.7E-31 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YPK_2220 30d84be8a33f9cca79b032f915f43d45 456 Gene3D G3DSA:3.20.20.140 52 445 2.0E-182 T 12-10-2018 YPK_2220 30d84be8a33f9cca79b032f915f43d45 456 SUPERFAMILY SSF51338 356 434 1.89E-7 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_2220 30d84be8a33f9cca79b032f915f43d45 456 SUPERFAMILY SSF51556 50 375 4.08E-69 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_3274 6b77d607463b9dde0b54f1db60ff2d0f 354 SUPERFAMILY SSF53850 70 351 4.6E-67 T 12-10-2018 YPK_3274 6b77d607463b9dde0b54f1db60ff2d0f 354 Gene3D G3DSA:3.40.190.10 154 296 1.6E-104 T 12-10-2018 YPK_3274 6b77d607463b9dde0b54f1db60ff2d0f 354 Pfam PF12849 PBP superfamily domain 67 319 2.9E-30 T 12-10-2018 IPR024370 PBP domain YPK_3274 6b77d607463b9dde0b54f1db60ff2d0f 354 Gene3D G3DSA:3.40.190.10 69 340 1.6E-104 T 12-10-2018 YPK_3274 6b77d607463b9dde0b54f1db60ff2d0f 354 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 46 338 4.8E-69 T 12-10-2018 IPR011862 Phosphate binding protein GO:0042301 YPK_0028 8427f806598536207bf4a15c9a7a43be 184 SUPERFAMILY SSF158668 6 170 2.22E-58 T 12-10-2018 IPR038026 MtlR-like superfamily YPK_0028 8427f806598536207bf4a15c9a7a43be 184 Gene3D G3DSA:1.20.120.330 3 172 4.7E-62 T 12-10-2018 YPK_0028 8427f806598536207bf4a15c9a7a43be 184 Pfam PF05068 Mannitol repressor 9 170 6.9E-63 T 12-10-2018 IPR007761 Mannitol repressor MtlR-like YPK_2640 05851c56305419be8b532120c261cd6a 637 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2640 05851c56305419be8b532120c261cd6a 637 Gene3D G3DSA:3.40.50.300 283 551 2.6E-63 T 12-10-2018 YPK_2640 05851c56305419be8b532120c261cd6a 637 Pfam PF12848 ABC transporter 224 298 1.7E-9 T 12-10-2018 IPR032781 ABC-transporter extension domain YPK_2640 05851c56305419be8b532120c261cd6a 637 SMART SM00382 28 230 8.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2640 05851c56305419be8b532120c261cd6a 637 SMART SM00382 344 514 1.3E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2640 05851c56305419be8b532120c261cd6a 637 Pfam PF00005 ABC transporter 336 469 3.2E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2640 05851c56305419be8b532120c261cd6a 637 Pfam PF00005 ABC transporter 19 185 1.2E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2640 05851c56305419be8b532120c261cd6a 637 SUPERFAMILY SSF52540 311 501 2.33E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2640 05851c56305419be8b532120c261cd6a 637 SUPERFAMILY SSF52540 4 244 1.52E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2640 05851c56305419be8b532120c261cd6a 637 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2640 05851c56305419be8b532120c261cd6a 637 Gene3D G3DSA:1.10.287.380 556 637 6.6E-29 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 YPK_2640 05851c56305419be8b532120c261cd6a 637 Gene3D G3DSA:3.40.50.300 11 279 1.7E-65 T 12-10-2018 YPK_2640 05851c56305419be8b532120c261cd6a 637 Pfam PF16326 ABC transporter C-terminal domain 564 632 5.7E-20 T 12-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 YPK_1435 493782b88072ae7631215c6358166baf 201 Pfam PF06042 Nucleotidyltransferase 23 199 2.4E-66 T 12-10-2018 IPR009267 Putative nucleotidyltransferase YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 Gene3D G3DSA:3.30.70.3070 163 267 2.7E-58 T 12-10-2018 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 Gene3D G3DSA:1.20.1330.10 59 314 2.7E-58 T 12-10-2018 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 Gene3D G3DSA:1.20.58.1830 1 58 2.9E-10 T 12-10-2018 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 SUPERFAMILY SSF64518 1 368 1.44E-106 T 12-10-2018 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 141 2.1E-43 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 Gene3D G3DSA:1.10.8.410 317 369 1.3E-23 T 12-10-2018 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 PRINTS PR00207 Flagellin signature 110 133 7.2E-31 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 PRINTS PR00207 Flagellin signature 75 94 7.2E-31 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 PRINTS PR00207 Flagellin signature 36 53 7.2E-31 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YPK_2381 777a75ff8c827836be3d03ec58e7bdd2 369 Pfam PF00700 Bacterial flagellin C-terminal helical region 284 368 2.6E-32 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YPK_2046 6722c1f6860f31831fad201c62bf1c37 396 Gene3D G3DSA:3.40.50.1100 9 204 3.3E-181 T 12-10-2018 YPK_2046 6722c1f6860f31831fad201c62bf1c37 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.011 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YPK_2046 6722c1f6860f31831fad201c62bf1c37 396 SUPERFAMILY SSF53686 4 389 2.1E-141 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_2046 6722c1f6860f31831fad201c62bf1c37 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 12-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YPK_2046 6722c1f6860f31831fad201c62bf1c37 396 Gene3D G3DSA:3.40.50.1100 53 383 3.3E-181 T 12-10-2018 YPK_2046 6722c1f6860f31831fad201c62bf1c37 396 PIRSF PIRSF001413 1 396 8.0E-170 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YPK_2046 6722c1f6860f31831fad201c62bf1c37 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 376 4.0E-49 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_2046 6722c1f6860f31831fad201c62bf1c37 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 1.3E-188 T 12-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YPK_2576 65a075d89c0708f01561883b37d47015 222 SUPERFAMILY SSF52540 1 218 2.01E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2576 65a075d89c0708f01561883b37d47015 222 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2576 65a075d89c0708f01561883b37d47015 222 Gene3D G3DSA:3.40.50.300 1 221 6.0E-63 T 12-10-2018 YPK_2576 65a075d89c0708f01561883b37d47015 222 SMART SM00382 30 217 3.4E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2576 65a075d89c0708f01561883b37d47015 222 Pfam PF00005 ABC transporter 21 169 2.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2914 a593084e5434730144bbc85e4e1ccbc6 682 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 57 504 1.3E-175 T 12-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 YPK_2914 a593084e5434730144bbc85e4e1ccbc6 682 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 19 503 2.5E-175 T 12-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 YPK_2914 a593084e5434730144bbc85e4e1ccbc6 682 ProSitePatterns PS01303 BCCT family of transporters signature. 320 329 - T 12-10-2018 IPR018093 BCCT transporter, conserved site YPK_0617 8c3a7061d6824281b58afb7981f62c09 267 Pfam PF08346 AntA/AntB antirepressor 43 117 5.4E-25 T 12-10-2018 IPR013557 AntA/AntB antirepressor YPK_2426 c797e40da757e8edd016605f084d65ef 269 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 135 267 4.8E-43 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPK_2426 c797e40da757e8edd016605f084d65ef 269 Pfam PF13144 Chaperone for flagella basal body P-ring formation 75 267 3.0E-53 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal YPK_2426 c797e40da757e8edd016605f084d65ef 269 Gene3D G3DSA:2.30.30.760 210 269 1.1E-25 T 12-10-2018 YPK_2426 c797e40da757e8edd016605f084d65ef 269 SMART SM00858 145 207 8.1E-14 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 YPK_3028 cbc4f6f64d86c39c8ec90cb00addf3da 85 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 82 18.54 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 YPK_3028 cbc4f6f64d86c39c8ec90cb00addf3da 85 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.1E-18 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 YPK_3028 cbc4f6f64d86c39c8ec90cb00addf3da 85 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 85 31.381 T 12-10-2018 IPR024905 Sec-independent protein translocase protein TatE YPK_3028 cbc4f6f64d86c39c8ec90cb00addf3da 85 Pfam PF02416 mttA/Hcf106 family 4 61 1.2E-12 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 YPK_4048 e8edbcb430fbabaf92c681341bc75f65 83 SUPERFAMILY SSF54060 2 77 5.1E-29 T 12-10-2018 YPK_4048 e8edbcb430fbabaf92c681341bc75f65 83 SMART SM00507 19 74 1.9E-4 T 12-10-2018 IPR003615 HNH nuclease YPK_4048 e8edbcb430fbabaf92c681341bc75f65 83 PRINTS PR01300 Pyocin S killer protein signature 59 78 1.2E-5 T 12-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 YPK_4048 e8edbcb430fbabaf92c681341bc75f65 83 PRINTS PR01300 Pyocin S killer protein signature 21 38 1.2E-5 T 12-10-2018 IPR003060 Pyocin S killer protein GO:0004519|GO:0005102|GO:0009405|GO:0009617|GO:0019835 YPK_4048 e8edbcb430fbabaf92c681341bc75f65 83 Gene3D G3DSA:3.90.540.10 1 83 6.2E-31 T 12-10-2018 IPR037146 Colicin/pyocin, DNase domain superfamily GO:0004519 YPK_3322 269dde239a6135adc7eea59423bc6ad3 386 SUPERFAMILY SSF53383 9 385 1.46E-99 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_3322 269dde239a6135adc7eea59423bc6ad3 386 Pfam PF00155 Aminotransferase class I and II 32 383 3.7E-61 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_3322 269dde239a6135adc7eea59423bc6ad3 386 Gene3D G3DSA:3.90.1150.10 20 383 2.8E-143 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_3322 269dde239a6135adc7eea59423bc6ad3 386 Gene3D G3DSA:3.40.640.10 45 284 2.8E-143 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1473 c8370417cda604aa709d188bb849b7d3 626 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 625 1.3E-196 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_1473 c8370417cda604aa709d188bb849b7d3 626 Pfam PF05947 Type VI secretion system, TssF 6 623 1.2E-200 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_1473 c8370417cda604aa709d188bb849b7d3 626 PIRSF PIRSF028304 1 626 3.6E-157 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_1128 ed8cf35b822f79f4696178affd4da200 268 SUPERFAMILY SSF52540 23 236 5.02E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1128 ed8cf35b822f79f4696178affd4da200 268 Pfam PF00005 ABC transporter 26 175 1.9E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1128 ed8cf35b822f79f4696178affd4da200 268 Gene3D G3DSA:3.40.50.300 10 263 7.3E-51 T 12-10-2018 YPK_1128 ed8cf35b822f79f4696178affd4da200 268 SMART SM00382 35 223 4.5E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0765 00ae633d6d21662b401ef786a8b45921 439 Gene3D G3DSA:1.25.40.10 233 418 1.3E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_0765 00ae633d6d21662b401ef786a8b45921 439 SUPERFAMILY SSF48452 260 407 4.11E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 SUPERFAMILY SSF50331 236 358 6.32E-28 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 Pfam PF08402 TOBE domain 281 352 6.1E-5 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 SUPERFAMILY SSF52540 4 243 1.58E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 Gene3D G3DSA:2.40.50.140 288 344 4.1E-32 T 12-10-2018 YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 Gene3D G3DSA:3.40.50.300 3 221 7.9E-67 T 12-10-2018 YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 Pfam PF00005 ABC transporter 19 161 5.0E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 Gene3D G3DSA:2.40.50.940 222 353 4.1E-32 T 12-10-2018 YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 SMART SM00382 28 211 6.8E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0967 415d16a9a0a6cdcfc6537c466633e842 368 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1548 eb24891342a6691b67a997a39c7b391b 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 4.6E-37 T 12-10-2018 IPR002178 PTS EIIA type-2 domain YPK_1548 eb24891342a6691b67a997a39c7b391b 147 Gene3D G3DSA:3.40.930.10 1 147 3.7E-60 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_1548 eb24891342a6691b67a997a39c7b391b 147 SUPERFAMILY SSF55804 1 145 1.22E-40 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 YPK_1171 c90a015eb503e7a8070a07af354d1e85 339 Pfam PF06166 Protein of unknown function (DUF979) 6 338 4.8E-130 T 12-10-2018 IPR009323 Protein of unknown function DUF979 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 Pfam PF00072 Response regulator receiver domain 6 120 8.1E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 Gene3D G3DSA:3.40.50.2300 1 142 2.9E-30 T 12-10-2018 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 51.731 T 12-10-2018 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 SMART SM00421 148 205 2.3E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 SMART SM00448 4 120 4.3E-15 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.4E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 Gene3D G3DSA:1.10.10.10 143 207 2.0E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 SUPERFAMILY SSF46894 144 206 1.84E-16 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 SUPERFAMILY SSF52172 3 136 2.7E-22 T 12-10-2018 IPR011006 CheY-like superfamily YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 8.1E-8 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 8.1E-8 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2843 2459f28e853cc1b5fe290d35a9d9b383 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 8.1E-8 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 SUPERFAMILY SSF141734 5 122 1.15E-46 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 1.0E-25 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 Gene3D G3DSA:3.10.20.400 3 97 1.4E-34 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 Gene3D G3DSA:1.10.287.1080 112 204 6.0E-28 T 12-10-2018 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 4.0E-31 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 116 201 8.0E-16 T 12-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 115 197 9.3E-30 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 18.275 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 203 37.686 T 12-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 YPK_2532 941fba5b323b033c44066ee42b2ea1df 204 SUPERFAMILY SSF101386 114 202 2.4E-23 T 12-10-2018 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 208 227 1.1E-13 T 12-10-2018 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 73 93 1.1E-13 T 12-10-2018 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 372 392 1.1E-13 T 12-10-2018 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 32 52 1.1E-13 T 12-10-2018 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 310 336 1.1E-13 T 12-10-2018 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 PRINTS PR00173 Glutamate-aspartate symporter signature 345 364 1.1E-13 T 12-10-2018 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 Gene3D G3DSA:1.10.3860.10 29 427 1.2E-71 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 26 427 36.333 T 12-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 SUPERFAMILY SSF118215 38 421 2.22E-95 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YPK_0558 a8c5eb2df80488fd8626c92e28b311ad 439 Pfam PF00375 Sodium:dicarboxylate symporter family 38 420 3.9E-64 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 YPK_3515 b91bd9135b95258256e79fd7ba4f2f5d 263 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 26 252 24.446 T 12-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 YPK_3515 b91bd9135b95258256e79fd7ba4f2f5d 263 Gene3D G3DSA:3.40.50.11690 127 259 1.1E-48 T 12-10-2018 YPK_3515 b91bd9135b95258256e79fd7ba4f2f5d 263 Pfam PF03799 Cell division protein FtsQ 130 244 2.6E-25 T 12-10-2018 IPR005548 Cell division protein FtsQ/DivIB YPK_3515 b91bd9135b95258256e79fd7ba4f2f5d 263 Gene3D G3DSA:3.10.20.310 58 126 2.2E-33 T 12-10-2018 YPK_3515 b91bd9135b95258256e79fd7ba4f2f5d 263 Pfam PF08478 POTRA domain, FtsQ-type 57 126 2.5E-22 T 12-10-2018 IPR013685 POTRA domain, FtsQ-type YPK_0095 36386217cef3b2c085f2ae8fe3df33c5 234 SUPERFAMILY SSF56935 53 234 3.66E-10 T 12-10-2018 YPK_0095 36386217cef3b2c085f2ae8fe3df33c5 234 Gene3D G3DSA:2.40.160.40 21 234 2.2E-75 T 12-10-2018 YPK_0095 36386217cef3b2c085f2ae8fe3df33c5 234 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 14 234 8.1E-79 T 12-10-2018 IPR009331 Oligogalacturonate-specific porin YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF05860 haemagglutination activity domain 74 207 1.0E-31 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF05594 Haemagluttinin repeat 256 373 1.0E-4 T 12-10-2018 IPR008619 Filamentous haemagglutinin repeat YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF05594 Haemagluttinin repeat 513 575 25.0 T 12-10-2018 IPR008619 Filamentous haemagglutinin repeat YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF05594 Haemagluttinin repeat 930 970 91.0 T 12-10-2018 IPR008619 Filamentous haemagglutinin repeat YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF05594 Haemagluttinin repeat 680 740 0.26 T 12-10-2018 IPR008619 Filamentous haemagglutinin repeat YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF05594 Haemagluttinin repeat 1210 1268 3.4 T 12-10-2018 IPR008619 Filamentous haemagglutinin repeat YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF04829 Pre-toxin domain with VENN motif 2279 2329 2.7E-22 T 12-10-2018 IPR006914 VENN motif-containing domain YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 107 203 6.2E-21 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF13332 Haemagluttinin repeat 1750 1925 1.2E-42 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF13332 Haemagluttinin repeat 1451 1520 0.0015 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF13332 Haemagluttinin repeat 1522 1679 6.9E-9 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 SMART SM00912 88 208 4.0E-45 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 SUPERFAMILY SSF51126 77 355 1.69E-65 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Gene3D G3DSA:2.160.20.10 75 369 3.5E-104 T 12-10-2018 IPR012334 Pectin lyase fold YPK_1622 f16e0328bac556af49bb2b9be23c2898 2545 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 6.1E-6 T 12-10-2018 IPR024973 ESPR domain YPK_2699 7e2a9cdefa0c6381f5968d3073e7562f 555 Pfam PF11398 Protein of unknown function (DUF2813) 1 377 2.8E-158 T 12-10-2018 IPR022602 Protein of unknown function DUF2813 YPK_2699 7e2a9cdefa0c6381f5968d3073e7562f 555 Gene3D G3DSA:3.40.50.300 1 349 2.4E-13 T 12-10-2018 YPK_2699 7e2a9cdefa0c6381f5968d3073e7562f 555 SUPERFAMILY SSF52540 1 335 1.3E-17 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 Gene3D G3DSA:1.10.10.60 286 395 7.5E-29 T 12-10-2018 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 SUPERFAMILY SSF46689 343 392 2.8E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 343 385 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 Pfam PF12833 Helix-turn-helix domain 314 389 2.0E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 SUPERFAMILY SSF46689 289 337 2.02E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 SMART SM00342 306 389 6.3E-29 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 Pfam PF13377 Periplasmic binding protein-like domain 113 282 1.3E-32 T 12-10-2018 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 Gene3D G3DSA:3.40.50.2300 8 274 4.2E-87 T 12-10-2018 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 Gene3D G3DSA:3.40.50.2300 102 283 4.2E-87 T 12-10-2018 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 SUPERFAMILY SSF53822 10 304 1.69E-40 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 358 373 5.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_0060 cb51826e6fa41ca594d57d8e7ff1e841 397 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 373 389 5.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_0596 1424e6a94d318c96b37551f1721fa90a 349 Pfam PF13437 HlyD family secretion protein 214 329 5.5E-10 T 12-10-2018 YPK_0596 1424e6a94d318c96b37551f1721fa90a 349 SUPERFAMILY SSF111369 125 263 1.05E-8 T 12-10-2018 YPK_0596 1424e6a94d318c96b37551f1721fa90a 349 Gene3D G3DSA:2.40.30.170 228 347 3.6E-27 T 12-10-2018 YPK_0596 1424e6a94d318c96b37551f1721fa90a 349 SUPERFAMILY SSF111369 50 111 6.15E-10 T 12-10-2018 YPK_0596 1424e6a94d318c96b37551f1721fa90a 349 Pfam PF13533 Biotin-lipoyl like 51 99 6.7E-14 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPK_0596 1424e6a94d318c96b37551f1721fa90a 349 Gene3D G3DSA:1.10.287.470 85 113 8.2E-12 T 12-10-2018 YPK_0596 1424e6a94d318c96b37551f1721fa90a 349 Gene3D G3DSA:1.10.287.470 118 187 5.5E-6 T 12-10-2018 YPK_0596 1424e6a94d318c96b37551f1721fa90a 349 Gene3D G3DSA:2.40.50.100 50 84 8.2E-12 T 12-10-2018 YPK_0067 98391e3c91d0eec499d0467a2a3e83a8 251 Pfam PF13683 Integrase core domain 173 238 1.2E-28 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YPK_0067 98391e3c91d0eec499d0467a2a3e83a8 251 Gene3D G3DSA:3.30.420.10 81 234 5.1E-20 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_0067 98391e3c91d0eec499d0467a2a3e83a8 251 Pfam PF13276 HTH-like domain 16 70 1.2E-11 T 12-10-2018 IPR025948 HTH-like domain YPK_0067 98391e3c91d0eec499d0467a2a3e83a8 251 SUPERFAMILY SSF53098 82 245 1.9E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_4233 89affb6eef1f9bf8686cfa0e48def073 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 1.3E-29 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_4233 89affb6eef1f9bf8686cfa0e48def073 295 SUPERFAMILY SSF161098 31 286 7.85E-34 T 12-10-2018 IPR035906 MetI-like superfamily YPK_4233 89affb6eef1f9bf8686cfa0e48def073 295 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 294 1.5E-84 T 12-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 YPK_4233 89affb6eef1f9bf8686cfa0e48def073 295 Gene3D G3DSA:1.10.3720.10 14 287 8.8E-29 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3434 9d94798a6a2ffa40a6d4399a374992f0 234 Pfam PF01583 Adenylylsulphate kinase 60 212 2.5E-72 T 12-10-2018 YPK_3434 9d94798a6a2ffa40a6d4399a374992f0 234 SUPERFAMILY SSF52540 58 224 4.48E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3434 9d94798a6a2ffa40a6d4399a374992f0 234 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 59 230 38.138 T 12-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 YPK_3434 9d94798a6a2ffa40a6d4399a374992f0 234 Gene3D G3DSA:3.40.50.300 38 234 3.2E-78 T 12-10-2018 YPK_3434 9d94798a6a2ffa40a6d4399a374992f0 234 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 43 226 4.5E-86 T 12-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 YPK_1224 3ab20637fbb83a4d7cff9492f28ceec6 293 Pfam PF04233 Phage Mu protein F like protein 165 281 3.5E-7 T 12-10-2018 IPR006528 Phage head morphogenesis domain YPK_3644 b47a6efea8697c3824d284965f5c77c0 77 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 71 3.1E-8 T 12-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 YPK_1970 02b40c52d6b992240c0a76084afe9196 86 Pfam PF01526 Tn3 transposase DDE domain 18 84 4.1E-21 T 12-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 Gene3D G3DSA:3.10.20.30 399 472 3.1E-33 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 Pfam PF13328 HD domain 46 191 2.6E-41 T 12-10-2018 IPR003607 HD/PDEase domain YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 Gene3D G3DSA:1.10.3210.10 27 207 7.1E-39 T 12-10-2018 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 2.3E-36 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 Pfam PF13291 ACT domain 664 740 1.7E-17 T 12-10-2018 IPR002912 ACT domain YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 Gene3D G3DSA:3.30.460.10 209 341 6.4E-50 T 12-10-2018 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 SUPERFAMILY SSF81301 196 409 2.62E-64 T 12-10-2018 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 SUPERFAMILY SSF55021 665 741 1.49E-13 T 12-10-2018 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 SMART SM00954 251 361 3.5E-66 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 Gene3D G3DSA:3.30.70.260 663 743 4.9E-18 T 12-10-2018 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 739 2.5E-187 T 12-10-2018 IPR004811 RelA/SpoT family GO:0015969 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 SUPERFAMILY SSF109604 25 207 7.22E-46 T 12-10-2018 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 Pfam PF02824 TGS domain 405 464 2.1E-21 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 YPK_3449 937f9571f7b751e668add8b6ea7f9dab 744 SUPERFAMILY SSF81271 398 464 2.62E-22 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 YPK_2156 0162138cbad3a0e388308a49e75fffc7 1631 Pfam PF13332 Haemagluttinin repeat 1217 1386 1.9E-16 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_2156 0162138cbad3a0e388308a49e75fffc7 1631 Pfam PF13332 Haemagluttinin repeat 635 774 2.8E-9 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_2156 0162138cbad3a0e388308a49e75fffc7 1631 Pfam PF13332 Haemagluttinin repeat 1047 1162 4.8E-9 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_2156 0162138cbad3a0e388308a49e75fffc7 1631 Gene3D G3DSA:2.160.20.10 40 284 1.5E-54 T 12-10-2018 IPR012334 Pectin lyase fold YPK_2156 0162138cbad3a0e388308a49e75fffc7 1631 SMART SM00912 54 174 1.1E-29 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_2156 0162138cbad3a0e388308a49e75fffc7 1631 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 72 155 4.0E-9 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_2156 0162138cbad3a0e388308a49e75fffc7 1631 SUPERFAMILY SSF51126 45 386 3.45E-36 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_2156 0162138cbad3a0e388308a49e75fffc7 1631 Pfam PF05860 haemagglutination activity domain 52 166 2.2E-19 T 12-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal YPK_0704 af34d4bd59d6c3137be4bf7d985870ea 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 204 223 1.5E-15 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_0704 af34d4bd59d6c3137be4bf7d985870ea 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 182 204 1.5E-15 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_0704 af34d4bd59d6c3137be4bf7d985870ea 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 23 44 1.5E-15 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_0704 af34d4bd59d6c3137be4bf7d985870ea 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 83 102 1.5E-15 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_0704 af34d4bd59d6c3137be4bf7d985870ea 259 Pfam PF01311 Bacterial export proteins, family 1 15 247 2.5E-56 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_0704 af34d4bd59d6c3137be4bf7d985870ea 259 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 16 255 2.7E-50 T 12-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 Pfam PF02875 Mur ligase family, glutamate ligase domain 299 357 1.4E-6 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 SUPERFAMILY SSF53623 13 296 3.48E-85 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 Pfam PF08245 Mur ligase middle domain 54 196 7.7E-9 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 Gene3D G3DSA:3.40.1190.10 1 299 5.1E-103 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 PIRSF PIRSF001563 5 434 3.1E-110 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 12-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 430 9.7E-104 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 SUPERFAMILY SSF53244 298 431 2.14E-33 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_1532 eecb3dd26da11498a8ace48d3335cf6d 434 Gene3D G3DSA:3.90.190.20 300 434 5.5E-39 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 YPK_2351 127d819716480c8c1e774735d5c8f488 154 Pfam PF06995 Phage P2 GpU 6 125 1.9E-43 T 12-10-2018 IPR009734 Myoviridae, GpU YPK_2351 127d819716480c8c1e774735d5c8f488 154 PIRSF PIRSF029208 1 150 1.6E-59 T 12-10-2018 IPR016912 Bacteriophage P2, GpU YPK_0826 a6d3ae5121b2c3cb2bb2be501962fbae 376 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 368 1.8E-139 T 12-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 YPK_0826 a6d3ae5121b2c3cb2bb2be501962fbae 376 Pfam PF04055 Radical SAM superfamily 11 179 1.5E-17 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_0826 a6d3ae5121b2c3cb2bb2be501962fbae 376 Pfam PF06969 HemN C-terminal domain 306 364 4.8E-8 T 12-10-2018 IPR010723 HemN, C-terminal YPK_0826 a6d3ae5121b2c3cb2bb2be501962fbae 376 Gene3D G3DSA:3.80.30.20 2 291 1.7E-98 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YPK_0826 a6d3ae5121b2c3cb2bb2be501962fbae 376 SMART SM00729 6 223 3.6E-49 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_0826 a6d3ae5121b2c3cb2bb2be501962fbae 376 SUPERFAMILY SSF102114 5 376 1.96E-107 T 12-10-2018 YPK_2675 10ced6011bea23e54455784824eb097f 588 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 9.5E-80 T 12-10-2018 IPR003776 YcaO-like domain YPK_2675 10ced6011bea23e54455784824eb097f 588 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 8.4E-160 T 12-10-2018 IPR003776 YcaO-like domain YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 1.2E-116 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 Gene3D G3DSA:3.30.1330.10 2 144 9.6E-46 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 PIRSF PIRSF005303 1 322 4.0E-91 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 SUPERFAMILY SSF55326 4 138 1.59E-34 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 SUPERFAMILY SSF56042 143 303 4.78E-39 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 322 29.277 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 Gene3D G3DSA:3.90.650.10 145 323 8.4E-58 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 297 2.4E-9 T 12-10-2018 IPR010918 PurM-like, C-terminal domain YPK_3255 59e02f380fbacd2c6a8b9db1d7212608 329 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 138 3.2E-22 T 12-10-2018 IPR016188 PurM-like, N-terminal domain YPK_3618 bde896b0d42dd81043991c024689481b 555 Pfam PF12848 ABC transporter 230 306 2.9E-12 T 12-10-2018 IPR032781 ABC-transporter extension domain YPK_3618 bde896b0d42dd81043991c024689481b 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 1.2E-294 T 12-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 YPK_3618 bde896b0d42dd81043991c024689481b 555 Gene3D G3DSA:3.40.50.300 286 555 1.1E-76 T 12-10-2018 YPK_3618 bde896b0d42dd81043991c024689481b 555 Gene3D G3DSA:3.40.50.300 1 285 7.4E-89 T 12-10-2018 YPK_3618 bde896b0d42dd81043991c024689481b 555 Pfam PF00005 ABC transporter 22 191 1.8E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3618 bde896b0d42dd81043991c024689481b 555 SUPERFAMILY SSF52540 303 525 1.75E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3618 bde896b0d42dd81043991c024689481b 555 SUPERFAMILY SSF52540 11 243 3.47E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3618 bde896b0d42dd81043991c024689481b 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3618 bde896b0d42dd81043991c024689481b 555 SMART SM00382 348 522 2.5E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3618 bde896b0d42dd81043991c024689481b 555 SMART SM00382 31 236 2.8E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3618 bde896b0d42dd81043991c024689481b 555 Pfam PF00005 ABC transporter 340 473 1.1E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0318 9bb7240408d73d92bc0faf2260f9e03a 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 1.8E-60 T 12-10-2018 IPR007456 Smg YPK_0318 9bb7240408d73d92bc0faf2260f9e03a 157 Hamap MF_00598 Protein Smg [smg]. 1 157 31.289 T 12-10-2018 IPR007456 Smg YPK_0524 5d73bf0d848d5778405ad66e5a089275 142 PIRSF PIRSF002181 1 142 1.3E-50 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 YPK_0524 5d73bf0d848d5778405ad66e5a089275 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.544 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 YPK_0524 5d73bf0d848d5778405ad66e5a089275 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 2.2E-67 T 12-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0524 5d73bf0d848d5778405ad66e5a089275 142 SUPERFAMILY SSF52161 1 140 2.35E-60 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0524 5d73bf0d848d5778405ad66e5a089275 142 Gene3D G3DSA:3.90.1180.10 1 142 1.3E-64 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0524 5d73bf0d848d5778405ad66e5a089275 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 12-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 YPK_0524 5d73bf0d848d5778405ad66e5a089275 142 Pfam PF00572 Ribosomal protein L13 15 138 8.5E-57 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 YPK_0351 8cd843d2872c809adee31f476290c84f 355 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 346 1.8E-135 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YPK_0351 8cd843d2872c809adee31f476290c84f 355 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.333 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YPK_0351 8cd843d2872c809adee31f476290c84f 355 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 4.1E-142 T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YPK_0351 8cd843d2872c809adee31f476290c84f 355 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YPK_0351 8cd843d2872c809adee31f476290c84f 355 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 YPK_0351 8cd843d2872c809adee31f476290c84f 355 SUPERFAMILY SSF51726 2 353 8.02E-122 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YPK_0351 8cd843d2872c809adee31f476290c84f 355 Gene3D G3DSA:3.20.20.210 1 354 7.3E-162 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 YPK_2449 1150a8d7eba71ceb3400322924f86605 458 PRINTS PR00095 Anthranilate synthase component I signature 292 305 5.8E-16 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2449 1150a8d7eba71ceb3400322924f86605 458 PRINTS PR00095 Anthranilate synthase component I signature 306 319 5.8E-16 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2449 1150a8d7eba71ceb3400322924f86605 458 PRINTS PR00095 Anthranilate synthase component I signature 401 415 5.8E-16 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2449 1150a8d7eba71ceb3400322924f86605 458 PRINTS PR00095 Anthranilate synthase component I signature 386 400 5.8E-16 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2449 1150a8d7eba71ceb3400322924f86605 458 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 154 1.4E-28 T 12-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 YPK_2449 1150a8d7eba71ceb3400322924f86605 458 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 107 448 2.9E-127 T 12-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 YPK_2449 1150a8d7eba71ceb3400322924f86605 458 Gene3D G3DSA:3.60.120.10 3 453 3.1E-173 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_2449 1150a8d7eba71ceb3400322924f86605 458 Pfam PF00425 chorismate binding enzyme 190 444 7.8E-94 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal YPK_2449 1150a8d7eba71ceb3400322924f86605 458 SUPERFAMILY SSF56322 4 452 6.15E-147 T 12-10-2018 IPR005801 ADC synthase GO:0009058 YPK_0261 24a971eaa5c8051a4efb17decbda0859 282 Gene3D G3DSA:3.60.130.10 1 282 1.9E-97 T 12-10-2018 YPK_0261 24a971eaa5c8051a4efb17decbda0859 282 SUPERFAMILY SSF51197 7 281 4.03E-94 T 12-10-2018 YPK_0261 24a971eaa5c8051a4efb17decbda0859 282 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 7 272 8.6E-65 T 12-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 SMART SM00938 4 105 9.7E-69 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 PIRSF PIRSF039144 1 112 4.5E-58 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 83 103 1.2E-44 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 2 17 1.2E-44 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 23 41 1.2E-44 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 52 75 1.2E-44 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.4E-44 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 Gene3D G3DSA:3.30.70.120 1 112 7.8E-49 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 12-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 SUPERFAMILY SSF54913 1 112 5.4E-47 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPK_1262 1e929a88e07fba04ea99e462ea391b5c 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 YPK_3912 f59a9363c77ee2d70457088c23baee9f 82 Pfam PF06287 Protein of unknown function (DUF1039) 17 81 6.0E-30 T 12-10-2018 IPR010437 Type III secretion system SsaH YPK_3912 f59a9363c77ee2d70457088c23baee9f 82 TIGRFAM TIGR02498 type_III_ssaH: type III secretion system protein, SsaH family 4 82 4.5E-37 T 12-10-2018 IPR010437 Type III secretion system SsaH YPK_4093 43db8edda69e661af5c26b3d5b5e09e0 294 Gene3D G3DSA:3.20.20.220 1 294 1.9E-117 T 12-10-2018 YPK_4093 43db8edda69e661af5c26b3d5b5e09e0 294 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 1.0E-103 T 12-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 YPK_4093 43db8edda69e661af5c26b3d5b5e09e0 294 Pfam PF02219 Methylenetetrahydrofolate reductase 17 291 8.0E-109 T 12-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 YPK_4093 43db8edda69e661af5c26b3d5b5e09e0 294 SUPERFAMILY SSF51730 22 293 4.71E-96 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like YPK_0534 921b3f29f6ab40da0deb0b13718c6054 217 SUPERFAMILY SSF52317 1 215 2.32E-59 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_0534 921b3f29f6ab40da0deb0b13718c6054 217 PIRSF PIRSF006320 1 216 1.4E-99 T 12-10-2018 IPR026041 Glyoxalase ElbB YPK_0534 921b3f29f6ab40da0deb0b13718c6054 217 Gene3D G3DSA:3.40.50.880 1 217 2.7E-90 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_3054 6b6e9092b007ea7e8094a39fb1685c16 787 Gene3D G3DSA:1.10.3810.10 46 243 3.0E-46 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3054 6b6e9092b007ea7e8094a39fb1685c16 787 Pfam PF00912 Transglycosylase 63 213 2.3E-44 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3054 6b6e9092b007ea7e8094a39fb1685c16 787 Gene3D G3DSA:3.40.710.10 253 622 2.8E-73 T 12-10-2018 YPK_3054 6b6e9092b007ea7e8094a39fb1685c16 787 Pfam PF00905 Penicillin binding protein transpeptidase domain 316 530 2.4E-17 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 YPK_3054 6b6e9092b007ea7e8094a39fb1685c16 787 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 36 784 5.3E-297 T 12-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3054 6b6e9092b007ea7e8094a39fb1685c16 787 SUPERFAMILY SSF53955 42 262 7.59E-53 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_3054 6b6e9092b007ea7e8094a39fb1685c16 787 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 697 781 3.5E-14 T 12-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3054 6b6e9092b007ea7e8094a39fb1685c16 787 SUPERFAMILY SSF56601 264 648 9.05E-93 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like YPK_0988 33f4a373fbca137962e87ff6cbce570c 388 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 18 380 7.1E-89 T 12-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 YPK_0988 33f4a373fbca137962e87ff6cbce570c 388 SUPERFAMILY SSF51556 53 354 7.85E-91 T 12-10-2018 IPR032466 Metal-dependent hydrolase YPK_0988 33f4a373fbca137962e87ff6cbce570c 388 Gene3D G3DSA:2.30.40.10 11 381 6.5E-121 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_0988 33f4a373fbca137962e87ff6cbce570c 388 SUPERFAMILY SSF51338 8 386 1.26E-12 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 YPK_0988 33f4a373fbca137962e87ff6cbce570c 388 Pfam PF01979 Amidohydrolase family 49 382 1.0E-21 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 YPK_0988 33f4a373fbca137962e87ff6cbce570c 388 Gene3D G3DSA:3.20.20.140 53 354 6.5E-121 T 12-10-2018 YPK_0988 33f4a373fbca137962e87ff6cbce570c 388 PIRSF PIRSF038994 1 387 8.4E-133 T 12-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 278 475 30.611 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 26 277 35.073 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 SUPERFAMILY SSF51366 26 274 2.24E-83 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 73 91 - T 12-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 SUPERFAMILY SSF51366 280 473 4.08E-57 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 Pfam PF00218 Indole-3-glycerol phosphate synthase 28 274 1.7E-95 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 Gene3D G3DSA:3.20.20.70 31 278 7.8E-183 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 Gene3D G3DSA:3.20.20.70 279 469 7.8E-183 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2045 bdb2b561e295c57fc39137231bac21b9 475 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 280 471 5.1E-57 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 YPK_3735 d47f312a4135193168b2e794af9e0eae 277 Gene3D G3DSA:3.20.20.20 1 277 3.1E-113 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_3735 d47f312a4135193168b2e794af9e0eae 277 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_3735 d47f312a4135193168b2e794af9e0eae 277 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 16 271 1.6E-102 T 12-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 YPK_3735 d47f312a4135193168b2e794af9e0eae 277 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_3735 d47f312a4135193168b2e794af9e0eae 277 Pfam PF00809 Pterin binding enzyme 18 257 1.8E-89 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_3735 d47f312a4135193168b2e794af9e0eae 277 SUPERFAMILY SSF51717 5 274 2.49E-106 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 YPK_2715 41fa98ddeccea938b932c9dc2feebd61 281 SUPERFAMILY SSF103481 177 277 1.03E-12 T 12-10-2018 YPK_2715 41fa98ddeccea938b932c9dc2feebd61 281 Pfam PF00892 EamA-like transporter family 4 133 5.8E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_2715 41fa98ddeccea938b932c9dc2feebd61 281 Pfam PF00892 EamA-like transporter family 146 270 7.4E-9 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_2715 41fa98ddeccea938b932c9dc2feebd61 281 SUPERFAMILY SSF103481 38 136 3.92E-14 T 12-10-2018 YPK_4222 ed2affadf47d099a67b84bf9a92c5180 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 1.9E-59 T 12-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 YPK_4222 ed2affadf47d099a67b84bf9a92c5180 156 SUPERFAMILY SSF81573 63 121 4.58E-15 T 12-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily YPK_4222 ed2affadf47d099a67b84bf9a92c5180 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.319 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 YPK_4222 ed2affadf47d099a67b84bf9a92c5180 156 Gene3D G3DSA:1.20.5.620 62 122 1.6E-24 T 12-10-2018 YPK_4222 ed2affadf47d099a67b84bf9a92c5180 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 6.6E-39 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 YPK_3494 7807a6a7b5e791866dab0674d35de4f8 465 Pfam PF00324 Amino acid permease 18 449 2.2E-118 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YPK_3494 7807a6a7b5e791866dab0674d35de4f8 465 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YPK_3494 7807a6a7b5e791866dab0674d35de4f8 465 PIRSF PIRSF006060 1 462 8.1E-75 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_3494 7807a6a7b5e791866dab0674d35de4f8 465 Gene3D G3DSA:1.20.1740.10 10 464 6.4E-59 T 12-10-2018 YPK_1137 470fdcf8ea9aac04a9a47724b04c7142 321 Hamap MF_01384 Urease accessory protein UreD [ureD]. 44 306 22.994 T 12-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 YPK_1137 470fdcf8ea9aac04a9a47724b04c7142 321 Pfam PF01774 UreD urease accessory protein 88 295 1.5E-41 T 12-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 YPK_2671 a5fddc30d53a01d9fbb4e4758d42fc61 361 SUPERFAMILY SSF53383 1 359 3.07E-118 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2671 a5fddc30d53a01d9fbb4e4758d42fc61 361 Pfam PF00266 Aminotransferase class-V 4 349 8.7E-67 T 12-10-2018 IPR000192 Aminotransferase class V domain YPK_2671 a5fddc30d53a01d9fbb4e4758d42fc61 361 Gene3D G3DSA:3.40.640.10 17 257 6.3E-93 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2671 a5fddc30d53a01d9fbb4e4758d42fc61 361 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 188 207 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPK_2671 a5fddc30d53a01d9fbb4e4758d42fc61 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 360 4.1E-157 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 YPK_2671 a5fddc30d53a01d9fbb4e4758d42fc61 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 360 51.743 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 YPK_2671 a5fddc30d53a01d9fbb4e4758d42fc61 361 PIRSF PIRSF000525 1 361 4.3E-151 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 YPK_2671 a5fddc30d53a01d9fbb4e4758d42fc61 361 Gene3D G3DSA:3.90.1150.10 258 361 2.6E-40 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1905 d3118364875cedb25c752543f9d4a97a 256 Gene3D G3DSA:3.40.630.10 22 256 1.3E-55 T 12-10-2018 YPK_1905 d3118364875cedb25c752543f9d4a97a 256 SUPERFAMILY SSF53187 28 240 8.6E-34 T 12-10-2018 YPK_1905 d3118364875cedb25c752543f9d4a97a 256 Pfam PF00246 Zinc carboxypeptidase 35 178 2.9E-13 T 12-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 YPK_2337 2eef5526fa551f9ad719cf32f85c1374 148 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 3 140 1.7E-35 T 12-10-2018 IPR006522 Phage virion morphogensis protein YPK_2337 2eef5526fa551f9ad719cf32f85c1374 148 Pfam PF05069 Phage virion morphogenesis family 3 146 7.6E-38 T 12-10-2018 IPR006522 Phage virion morphogensis protein YPK_0570 f05ba7272383d64dfb357d51ad22c193 212 Gene3D G3DSA:3.40.50.410 6 177 4.3E-21 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_0570 f05ba7272383d64dfb357d51ad22c193 212 PIRSF PIRSF020634 1 211 9.8E-80 T 12-10-2018 IPR011392 Tellurite resistance, TerY YPK_0570 f05ba7272383d64dfb357d51ad22c193 212 SUPERFAMILY SSF53300 5 159 4.87E-23 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily YPK_0570 f05ba7272383d64dfb357d51ad22c193 212 SMART SM00327 3 178 4.3E-13 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_0570 f05ba7272383d64dfb357d51ad22c193 212 Pfam PF00092 von Willebrand factor type A domain 6 156 1.9E-13 T 12-10-2018 IPR002035 von Willebrand factor, type A YPK_0585 d0318f78218a887a250cdb1a5a6c847d 459 Gene3D G3DSA:1.50.10.140 57 413 2.5E-24 T 12-10-2018 YPK_0585 d0318f78218a887a250cdb1a5a6c847d 459 Pfam PF10091 Putative glucoamylase 257 410 3.9E-7 T 12-10-2018 IPR019282 Domain of unknown function DUF2329 YPK_0711 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 117 135 2.4E-25 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_0711 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 149 163 2.4E-25 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_0711 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 334 358 2.4E-25 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_0711 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 193 211 2.4E-25 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_0711 fb64a180825d21bb5640b68932004013 546 PRINTS PR01009 Flagellar M-ring protein signature 265 283 2.4E-25 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_0711 fb64a180825d21bb5640b68932004013 546 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 16 538 2.7E-59 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_0711 fb64a180825d21bb5640b68932004013 546 Pfam PF01514 Secretory protein of YscJ/FliF family 26 218 4.2E-58 T 12-10-2018 IPR006182 Secretory protein YscJ/FliF YPK_0711 fb64a180825d21bb5640b68932004013 546 Gene3D G3DSA:3.30.300.30 115 221 5.8E-9 T 12-10-2018 YPK_0711 fb64a180825d21bb5640b68932004013 546 PIRSF PIRSF004862 1 540 1.2E-107 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 YPK_0711 fb64a180825d21bb5640b68932004013 546 Pfam PF08345 Flagellar M-ring protein C-terminal 252 403 1.1E-35 T 12-10-2018 IPR013556 Flagellar M-ring C-terminal YPK_1380 db42b06b84c28839747feb4283f5e185 182 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 168 7.7E-34 T 12-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase YPK_1104 cd03bf5325680cbede5df96b86fee7dd 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 160 244 1.3E-7 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase YPK_1104 cd03bf5325680cbede5df96b86fee7dd 253 Gene3D G3DSA:3.60.10.10 35 253 2.0E-18 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPK_1104 cd03bf5325680cbede5df96b86fee7dd 253 SUPERFAMILY SSF56219 36 251 3.27E-25 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 902 36.609 T 12-10-2018 IPR023768 Transcriptional regulator HTH-type, MalT YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 Gene3D G3DSA:3.40.50.300 19 186 2.1E-5 T 12-10-2018 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 853 869 1.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 881 1.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 853 1.3E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 Gene3D G3DSA:1.10.10.10 828 900 5.3E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 SUPERFAMILY SSF52540 7 225 9.69E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 ProSitePatterns PS00622 LuxR-type HTH domain signature. 853 880 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 Pfam PF00196 Bacterial regulatory proteins, luxR family 838 891 1.4E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 SUPERFAMILY SSF46894 829 895 1.29E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 Gene3D G3DSA:1.25.40.10 439 811 1.6E-94 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 SMART SM00421 836 893 6.4E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0160 9e033452c91f32f23d3db58bcefb3c71 903 SUPERFAMILY SSF48452 442 806 8.94E-158 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1848 adbe9656e7e7fd4cf60f2627298e1334 503 Pfam PF01458 Uncharacterized protein family (UPF0051) 242 474 7.1E-68 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 YPK_1848 adbe9656e7e7fd4cf60f2627298e1334 503 SUPERFAMILY SSF101960 41 500 1.31E-134 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily YPK_1848 adbe9656e7e7fd4cf60f2627298e1334 503 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 494 5.5E-194 T 12-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 YPK_0768 e97e4a63d329e0f42e7944ef21a72724 181 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 2 57 2.6E-22 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YPK_0768 e97e4a63d329e0f42e7944ef21a72724 181 Gene3D G3DSA:2.180.10.10 1 57 1.4E-20 T 12-10-2018 YPK_0768 e97e4a63d329e0f42e7944ef21a72724 181 Pfam PF14412 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH 67 175 1.2E-5 T 12-10-2018 IPR032871 AHH domain-containing protein YPK_0768 e97e4a63d329e0f42e7944ef21a72724 181 PRINTS PR00394 RHS protein signature 2 22 1.1E-13 T 12-10-2018 IPR001826 RHS protein YPK_0768 e97e4a63d329e0f42e7944ef21a72724 181 PRINTS PR00394 RHS protein signature 25 44 1.1E-13 T 12-10-2018 IPR001826 RHS protein YPK_3325 61dc39b5b313ff504d1c2c75647ed641 441 Gene3D G3DSA:3.40.640.10 29 290 1.3E-134 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_3325 61dc39b5b313ff504d1c2c75647ed641 441 Gene3D G3DSA:3.90.1150.10 18 388 1.3E-134 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_3325 61dc39b5b313ff504d1c2c75647ed641 441 PIRSF PIRSF000524 11 417 5.6E-103 T 12-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 YPK_3325 61dc39b5b313ff504d1c2c75647ed641 441 Pfam PF00266 Aminotransferase class-V 20 356 1.3E-23 T 12-10-2018 IPR000192 Aminotransferase class V domain YPK_3325 61dc39b5b313ff504d1c2c75647ed641 441 SUPERFAMILY SSF53383 10 395 1.53E-89 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_0007 67f342c3158728750fcc77d9b40179ce 317 Gene3D G3DSA:3.40.50.720 125 297 7.4E-77 T 12-10-2018 YPK_0007 67f342c3158728750fcc77d9b40179ce 317 Gene3D G3DSA:3.30.1780.10 5 309 7.4E-77 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 YPK_0007 67f342c3158728750fcc77d9b40179ce 317 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 15 309 3.7E-62 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 YPK_0007 67f342c3158728750fcc77d9b40179ce 317 SUPERFAMILY SSF51735 1 307 1.37E-71 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0007 67f342c3158728750fcc77d9b40179ce 317 PIRSF PIRSF001439 1 310 7.1E-55 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 YPK_0517 a0256e272a26a2995dd5a9e58b463a7e 87 PIRSF PIRSF003113 1 86 1.1E-22 T 12-10-2018 IPR002634 BolA protein YPK_0517 a0256e272a26a2995dd5a9e58b463a7e 87 SUPERFAMILY SSF82657 4 85 4.19E-30 T 12-10-2018 IPR036065 BolA-like superfamily YPK_0517 a0256e272a26a2995dd5a9e58b463a7e 87 Pfam PF01722 BolA-like protein 22 77 9.5E-16 T 12-10-2018 IPR002634 BolA protein YPK_0517 a0256e272a26a2995dd5a9e58b463a7e 87 Gene3D G3DSA:3.30.300.90 1 87 2.2E-37 T 12-10-2018 YPK_0952 6d38d809e8bb2703043101c4b79a1c1b 510 SUPERFAMILY SSF69369 210 421 7.19E-25 T 12-10-2018 IPR036302 Pyosin/cloacin translocation domain superfamily GO:0009405 YPK_0952 6d38d809e8bb2703043101c4b79a1c1b 510 Pfam PF06958 S-type Pyocin 269 408 1.8E-40 T 12-10-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 YPK_0952 6d38d809e8bb2703043101c4b79a1c1b 510 Pfam PF05488 PAAR motif 9 54 9.6E-9 T 12-10-2018 IPR008727 PAAR motif YPK_4236 57a1c11d3b798748d2e5787564dac035 223 Pfam PF04519 Polymer-forming cytoskeletal 87 183 1.5E-17 T 12-10-2018 IPR007607 Bactofilin A/B YPK_1758 89d3c26a612b93f78aaf8b52f795972f 129 Gene3D G3DSA:3.40.50.2300 2 129 1.5E-38 T 12-10-2018 YPK_1758 89d3c26a612b93f78aaf8b52f795972f 129 SMART SM00448 6 120 7.7E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1758 89d3c26a612b93f78aaf8b52f795972f 129 Pfam PF00072 Response regulator receiver domain 9 120 9.7E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_1758 89d3c26a612b93f78aaf8b52f795972f 129 SUPERFAMILY SSF52172 5 125 1.85E-36 T 12-10-2018 IPR011006 CheY-like superfamily YPK_1347 0353af32e1cfe51bfa06226216456b24 270 Gene3D G3DSA:3.40.50.300 19 266 3.3E-64 T 12-10-2018 YPK_1347 0353af32e1cfe51bfa06226216456b24 270 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1347 0353af32e1cfe51bfa06226216456b24 270 SMART SM00382 48 242 3.2E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1347 0353af32e1cfe51bfa06226216456b24 270 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 24 270 2.0E-117 T 12-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 YPK_1347 0353af32e1cfe51bfa06226216456b24 270 SUPERFAMILY SSF52540 21 256 1.45E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1347 0353af32e1cfe51bfa06226216456b24 270 Pfam PF00005 ABC transporter 39 195 5.5E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2341 990604e960d89038f64bf94623db40e9 211 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 8 208 7.4E-62 T 12-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 YPK_2341 990604e960d89038f64bf94623db40e9 211 Gene3D G3DSA:2.40.50.230 4 88 3.0E-31 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_2341 990604e960d89038f64bf94623db40e9 211 Gene3D G3DSA:2.60.220.40 89 161 4.2E-30 T 12-10-2018 YPK_2341 990604e960d89038f64bf94623db40e9 211 Pfam PF04717 Type VI secretion system, phage-baseplate injector 8 117 1.4E-43 T 12-10-2018 IPR006531 Gp5 N-terminal YPK_0367 ce25650ab514050a9886fba0cb58b245 280 Gene3D G3DSA:3.30.450.40 99 278 3.2E-66 T 12-10-2018 IPR029016 GAF-like domain superfamily YPK_0367 ce25650ab514050a9886fba0cb58b245 280 SUPERFAMILY SSF55781 98 274 3.99E-50 T 12-10-2018 YPK_0367 ce25650ab514050a9886fba0cb58b245 280 Gene3D G3DSA:1.10.10.10 11 88 5.3E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0367 ce25650ab514050a9886fba0cb58b245 280 SUPERFAMILY SSF46785 27 100 6.83E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0367 ce25650ab514050a9886fba0cb58b245 280 Pfam PF09339 IclR helix-turn-helix domain 29 79 4.2E-18 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 YPK_0367 ce25650ab514050a9886fba0cb58b245 280 SMART SM00346 27 117 6.5E-34 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 YPK_0367 ce25650ab514050a9886fba0cb58b245 280 Pfam PF01614 Bacterial transcriptional regulator 148 271 1.5E-39 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal YPK_1879 158dcdefc7d0dbd725fc47e3a71459f2 104 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 33 94 5.5E-17 T 12-10-2018 IPR018660 C-type lysozyme inhibitor YPK_1879 158dcdefc7d0dbd725fc47e3a71459f2 104 SUPERFAMILY SSF141488 29 101 1.1E-22 T 12-10-2018 IPR036328 C-type lysozyme inhibitor superfamily YPK_1879 158dcdefc7d0dbd725fc47e3a71459f2 104 Gene3D G3DSA:2.40.128.200 27 103 1.1E-26 T 12-10-2018 IPR036328 C-type lysozyme inhibitor superfamily YPK_2457 a943112d4445c58251fc9f2e05286690 132 SUPERFAMILY SSF55331 3 125 2.32E-42 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily YPK_2457 a943112d4445c58251fc9f2e05286690 132 Gene3D G3DSA:3.30.429.10 3 126 7.1E-46 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily YPK_2457 a943112d4445c58251fc9f2e05286690 132 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 3 123 6.2E-22 T 12-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 YPK_1664 2ece47da496e965758d287474b26ddad 512 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 9 503 3.9E-108 T 12-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 YPK_1664 2ece47da496e965758d287474b26ddad 512 Pfam PF00854 POT family 91 465 2.3E-65 T 12-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 YPK_1664 2ece47da496e965758d287474b26ddad 512 SUPERFAMILY SSF103473 336 500 8.24E-11 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1664 2ece47da496e965758d287474b26ddad 512 Gene3D G3DSA:1.20.1250.20 1 503 1.6E-158 T 12-10-2018 YPK_1664 2ece47da496e965758d287474b26ddad 512 SUPERFAMILY SSF103473 16 312 1.7E-25 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1664 2ece47da496e965758d287474b26ddad 512 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 79 103 - T 12-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 YPK_1664 2ece47da496e965758d287474b26ddad 512 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 155 167 - T 12-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 YPK_2196 2ff6a33547cf062e9a94c35514db71f4 357 SUPERFAMILY SSF53474 56 353 8.7E-30 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2196 2ff6a33547cf062e9a94c35514db71f4 357 Pfam PF12697 Alpha/beta hydrolase family 84 308 1.2E-8 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_2196 2ff6a33547cf062e9a94c35514db71f4 357 Gene3D G3DSA:3.40.50.1820 26 357 2.6E-108 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1270 cec1f24e83f5090f01eb7aca30558e5f 453 Gene3D G3DSA:1.10.1790.10 258 357 3.6E-13 T 12-10-2018 YPK_1270 cec1f24e83f5090f01eb7aca30558e5f 453 Pfam PF00874 PRD domain 266 355 8.8E-16 T 12-10-2018 IPR011608 PRD domain GO:0006355 YPK_1270 cec1f24e83f5090f01eb7aca30558e5f 453 SUPERFAMILY SSF63520 258 359 1.7E-18 T 12-10-2018 IPR036634 PRD domain superfamily GO:0006355 YPK_2606 a97e8f8e3f6b71a7541cb864b6a3eea2 250 SUPERFAMILY SSF52096 7 240 4.1E-47 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily YPK_2606 a97e8f8e3f6b71a7541cb864b6a3eea2 250 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 244 1.5E-47 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 YPK_2606 a97e8f8e3f6b71a7541cb864b6a3eea2 250 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 YPK_2606 a97e8f8e3f6b71a7541cb864b6a3eea2 250 Gene3D G3DSA:3.90.226.10 1 224 7.9E-49 T 12-10-2018 YPK_0778 54d1d8ced6a7b7b4e1cabc84138a4199 459 Pfam PF00939 Sodium:sulfate symporter transmembrane region 27 458 5.7E-54 T 12-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 YPK_0778 54d1d8ced6a7b7b4e1cabc84138a4199 459 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 408 424 - T 12-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 YPK_0778 54d1d8ced6a7b7b4e1cabc84138a4199 459 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 40 457 2.9E-112 T 12-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 YPK_3602 e8d560236b72b2267721d41b30debcc8 429 Pfam PF14821 Threonine synthase N terminus 8 80 5.3E-11 T 12-10-2018 IPR029144 Threonine synthase, N-terminal YPK_3602 e8d560236b72b2267721d41b30debcc8 429 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 93 370 7.2E-24 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme YPK_3602 e8d560236b72b2267721d41b30debcc8 429 TIGRFAM TIGR00260 thrC: threonine synthase 53 397 3.7E-121 T 12-10-2018 IPR004450 Threonine synthase-like YPK_3602 e8d560236b72b2267721d41b30debcc8 429 Gene3D G3DSA:3.40.50.1100 103 401 4.1E-141 T 12-10-2018 YPK_3602 e8d560236b72b2267721d41b30debcc8 429 SUPERFAMILY SSF53686 1 426 1.83E-132 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme YPK_3602 e8d560236b72b2267721d41b30debcc8 429 Gene3D G3DSA:3.40.50.1100 85 394 4.1E-141 T 12-10-2018 YPK_3602 e8d560236b72b2267721d41b30debcc8 429 Gene3D G3DSA:3.90.1380.10 1 81 6.8E-34 T 12-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily YPK_3602 e8d560236b72b2267721d41b30debcc8 429 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 YPK_2249 56c2e79f6292bb90131b109de0f5615b 469 Pfam PF04945 YHS domain 408 454 2.7E-18 T 12-10-2018 IPR007029 YHS domain YPK_2249 56c2e79f6292bb90131b109de0f5615b 469 Pfam PF10080 Predicted membrane protein (DUF2318) 297 400 1.7E-28 T 12-10-2018 IPR018758 Domain of unknown function DUF2318, membrane YPK_0901 db87fd784596f5d9e80391a9c7af5acd 150 Pfam PF05926 Phage head completion protein (GPL) 14 150 6.5E-42 T 12-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 YPK_2604 ee94b3832303daef572761cf0bd10421 110 Pfam PF13924 Lipocalin-like domain 1 108 9.6E-24 T 12-10-2018 IPR024311 Lipocalin-like domain YPK_0610 baf766e365a4e2809d317b225e1b126d 392 SUPERFAMILY SSF54060 256 353 8.24E-18 T 12-10-2018 YPK_0610 baf766e365a4e2809d317b225e1b126d 392 Pfam PF12639 DNase/tRNase domain of colicin-like bacteriocin 289 346 2.3E-7 T 12-10-2018 YPK_3456 ab1f8dae3ccaf204036cd9bd633f66cf 204 Pfam PF03458 UPF0126 domain 92 161 1.2E-19 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 YPK_3456 ab1f8dae3ccaf204036cd9bd633f66cf 204 Pfam PF03458 UPF0126 domain 4 78 1.3E-22 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 YPK_4181 f49dec2794eebe59ff95e577c38b0bcf 404 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 24.697 T 12-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 YPK_4181 f49dec2794eebe59ff95e577c38b0bcf 404 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 2 397 1.3E-190 T 12-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 YPK_4181 f49dec2794eebe59ff95e577c38b0bcf 404 Pfam PF03616 Sodium/glutamate symporter 2 366 3.9E-160 T 12-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 YPK_1349 57574e446e1b019e922f4251088ee482 181 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 6.3E-22 T 12-10-2018 IPR000182 GNAT domain YPK_1349 57574e446e1b019e922f4251088ee482 181 SUPERFAMILY SSF55729 3 164 6.67E-41 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_1349 57574e446e1b019e922f4251088ee482 181 Gene3D G3DSA:3.40.630.30 5 174 1.1E-50 T 12-10-2018 YPK_1075 26f9e63da11e8cd882d54e87d66eed05 165 Gene3D G3DSA:3.30.910.20 21 165 1.6E-49 T 12-10-2018 IPR024930 Skp domain superfamily YPK_1075 26f9e63da11e8cd882d54e87d66eed05 165 SMART SM00935 12 165 7.4E-57 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 YPK_1075 26f9e63da11e8cd882d54e87d66eed05 165 Pfam PF03938 Outer membrane protein (OmpH-like) 10 163 1.1E-37 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 YPK_1075 26f9e63da11e8cd882d54e87d66eed05 165 PIRSF PIRSF002094 1 165 6.3E-63 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 YPK_1075 26f9e63da11e8cd882d54e87d66eed05 165 SUPERFAMILY SSF111384 22 164 2.22E-39 T 12-10-2018 YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 1.7E-23 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 7.7E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 7.7E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 SMART SM00895 90 217 8.1E-22 T 12-10-2018 IPR011711 GntR, C-terminal YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 SUPERFAMILY SSF48008 88 224 1.86E-26 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 SUPERFAMILY SSF46785 2 70 2.36E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 Gene3D G3DSA:1.20.120.530 85 226 5.3E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 Gene3D G3DSA:1.10.10.10 1 71 3.3E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 Pfam PF07729 FCD domain 90 216 3.9E-22 T 12-10-2018 IPR011711 GntR, C-terminal YPK_2780 fd2c84e9e0f81013695a15cea7038f12 247 SMART SM00345 7 66 2.3E-24 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 YPK_1780 c1d0147cab1307e1eeaf0c2c01075179 450 Pfam PF04403 Paraquat-inducible protein A 285 441 2.6E-46 T 12-10-2018 IPR007498 Intermembrane transport protein PqiA-like YPK_1780 c1d0147cab1307e1eeaf0c2c01075179 450 Pfam PF04403 Paraquat-inducible protein A 88 239 1.7E-38 T 12-10-2018 IPR007498 Intermembrane transport protein PqiA-like YPK_1780 c1d0147cab1307e1eeaf0c2c01075179 450 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 41 440 5.7E-172 T 12-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPK_1963 4689c9f85053b238833e7dd43f5d8199 316 Gene3D G3DSA:3.40.50.2300 131 265 6.2E-75 T 12-10-2018 YPK_1963 4689c9f85053b238833e7dd43f5d8199 316 SUPERFAMILY SSF53822 32 308 1.14E-69 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1963 4689c9f85053b238833e7dd43f5d8199 316 Pfam PF13407 Periplasmic binding protein domain 32 285 2.1E-51 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_1963 4689c9f85053b238833e7dd43f5d8199 316 Gene3D G3DSA:3.40.50.2300 38 284 6.2E-75 T 12-10-2018 YPK_1499 47862efd253d4265f166b2541b348fbf 100 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 4.6E-19 T 12-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 YPK_1499 47862efd253d4265f166b2541b348fbf 100 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 58 6.7E-21 T 12-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 YPK_1828 4f1037756aaabe53b7756ba52229b6b4 335 Gene3D G3DSA:1.10.3470.10 7 332 1.3E-105 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_1828 4f1037756aaabe53b7756ba52229b6b4 335 SUPERFAMILY SSF81345 12 330 5.1E-78 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_1828 4f1037756aaabe53b7756ba52229b6b4 335 Pfam PF01032 FecCD transport family 29 330 1.1E-83 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_1828 4f1037756aaabe53b7756ba52229b6b4 335 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 7 333 32.814 T 12-10-2018 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 YPK_4248 9c326c4080fb4ae0e88bb0c963d499c3 108 SUPERFAMILY SSF54211 1 103 1.74E-29 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_4248 9c326c4080fb4ae0e88bb0c963d499c3 108 Gene3D G3DSA:3.30.230.10 1 108 1.4E-40 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_4248 9c326c4080fb4ae0e88bb0c963d499c3 108 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 103 1.9E-34 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 YPK_4248 9c326c4080fb4ae0e88bb0c963d499c3 108 Pfam PF00825 Ribonuclease P 1 100 5.9E-30 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 YPK_4248 9c326c4080fb4ae0e88bb0c963d499c3 108 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 6 87 3.0E-42 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 YPK_4248 9c326c4080fb4ae0e88bb0c963d499c3 108 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 45 59 - T 12-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 YPK_4248 9c326c4080fb4ae0e88bb0c963d499c3 108 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 104 12.945 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 YPK_3044 be77abee7c7a0320179be762c330bed8 515 Gene3D G3DSA:3.40.50.300 1 237 8.4E-55 T 12-10-2018 YPK_3044 be77abee7c7a0320179be762c330bed8 515 Pfam PF00005 ABC transporter 21 172 2.0E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3044 be77abee7c7a0320179be762c330bed8 515 Gene3D G3DSA:3.40.50.300 268 512 2.1E-43 T 12-10-2018 YPK_3044 be77abee7c7a0320179be762c330bed8 515 SUPERFAMILY SSF52540 4 224 1.7E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3044 be77abee7c7a0320179be762c330bed8 515 Pfam PF00005 ABC transporter 282 437 6.9E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3044 be77abee7c7a0320179be762c330bed8 515 SUPERFAMILY SSF52540 278 494 1.31E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3044 be77abee7c7a0320179be762c330bed8 515 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3044 be77abee7c7a0320179be762c330bed8 515 SMART SM00382 30 251 1.7E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3044 be77abee7c7a0320179be762c330bed8 515 SMART SM00382 291 497 5.7E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3213 5b8872371b181aea2a9a0dd8083c0c1b 122 Pfam PF10757 Biofilm formation regulator YbaJ 1 118 2.5E-64 T 12-10-2018 IPR019693 Biofilm formation regulator YbaJ YPK_1469 85b58ef557163989bca6bb7d276eaefc 445 SUPERFAMILY SSF53448 88 255 1.55E-10 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_1469 85b58ef557163989bca6bb7d276eaefc 445 Pfam PF11397 Glycosyltransferase (GlcNAc) 71 315 3.3E-59 T 12-10-2018 IPR021067 Glycosyltransferase, GlcNAc YPK_1469 85b58ef557163989bca6bb7d276eaefc 445 Pfam PF11397 Glycosyltransferase (GlcNAc) 6 47 5.1E-9 T 12-10-2018 IPR021067 Glycosyltransferase, GlcNAc YPK_0201 a2ba80d1a6e5241b1a24a04a312ffa69 145 SUPERFAMILY SSF46689 11 134 1.97E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_0201 a2ba80d1a6e5241b1a24a04a312ffa69 145 Pfam PF08765 Mor transcription activator family 32 136 4.9E-10 T 12-10-2018 IPR014875 Mor transcription activator YPK_3227 672dab55635d0342b33c91029a4181cd 232 Gene3D G3DSA:3.40.50.620 1 232 2.3E-84 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3227 672dab55635d0342b33c91029a4181cd 232 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 220 50.435 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 YPK_3227 672dab55635d0342b33c91029a4181cd 232 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 207 5.4E-83 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 YPK_3227 672dab55635d0342b33c91029a4181cd 232 Pfam PF06508 Queuosine biosynthesis protein QueC 3 214 2.7E-81 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 YPK_3227 672dab55635d0342b33c91029a4181cd 232 PIRSF PIRSF006293 1 226 2.3E-82 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 YPK_3227 672dab55635d0342b33c91029a4181cd 232 SUPERFAMILY SSF52402 1 215 3.53E-67 T 12-10-2018 YPK_2709 67c9d5ce2732c36a100f58f0d32c7eb0 186 Pfam PF01817 Chorismate mutase type II 39 104 6.0E-9 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_2709 67c9d5ce2732c36a100f58f0d32c7eb0 186 SUPERFAMILY SSF48600 38 184 2.58E-36 T 12-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_2709 67c9d5ce2732c36a100f58f0d32c7eb0 186 Gene3D G3DSA:1.20.140.170 31 186 9.9E-63 T 12-10-2018 YPK_2709 67c9d5ce2732c36a100f58f0d32c7eb0 186 SMART SM00830 35 106 1.8E-10 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_2709 67c9d5ce2732c36a100f58f0d32c7eb0 186 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 29 141 3.6E-45 T 12-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_2709 67c9d5ce2732c36a100f58f0d32c7eb0 186 PIRSF PIRSF026640 1 186 1.7E-67 T 12-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 YPK_1460 d3deba8417b2e84d169a8e0502299c32 174 Pfam PF09900 Predicted membrane protein (DUF2127) 23 161 2.2E-29 T 12-10-2018 IPR021125 Protein of unknown function DUF2127 YPK_1460 d3deba8417b2e84d169a8e0502299c32 174 PIRSF PIRSF034455 1 170 3.8E-45 T 12-10-2018 IPR014591 Uncharacterised conserved protein UCP034455 YPK_0284 3476b68d211c1d01328d01318d8bbe2d 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 1.7E-74 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0284 3476b68d211c1d01328d01318d8bbe2d 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 4 201 33.968 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0284 3476b68d211c1d01328d01318d8bbe2d 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 4.1E-64 T 12-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 YPK_0284 3476b68d211c1d01328d01318d8bbe2d 201 Gene3D G3DSA:3.40.1370.10 3 201 2.8E-68 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 YPK_0284 3476b68d211c1d01328d01318d8bbe2d 201 SUPERFAMILY SSF52166 10 200 7.06E-73 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 YPK_4057 ee69eae297ecb80c1757c5914372b0ca 616 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 8.2E-261 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_4057 ee69eae297ecb80c1757c5914372b0ca 616 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_4057 ee69eae297ecb80c1757c5914372b0ca 616 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 45.006 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_4057 ee69eae297ecb80c1757c5914372b0ca 616 SUPERFAMILY SSF143975 3 420 4.05E-132 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_4057 ee69eae297ecb80c1757c5914372b0ca 616 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_4057 ee69eae297ecb80c1757c5914372b0ca 616 Pfam PF00920 Dehydratase family 34 607 1.1E-215 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 YPK_4057 ee69eae297ecb80c1757c5914372b0ca 616 Gene3D G3DSA:3.50.30.80 421 573 4.1E-55 T 12-10-2018 YPK_4057 ee69eae297ecb80c1757c5914372b0ca 616 SUPERFAMILY SSF52016 421 610 4.0E-59 T 12-10-2018 YPK_0695 88b13cb428d4dcd5500340f044111646 826 Gene3D G3DSA:2.60.40.2610 656 745 7.7E-11 T 12-10-2018 YPK_0695 88b13cb428d4dcd5500340f044111646 826 SUPERFAMILY SSF141729 25 145 1.83E-30 T 12-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YPK_0695 88b13cb428d4dcd5500340f044111646 826 Pfam PF00577 Outer membrane usher protein 187 740 2.3E-167 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_0695 88b13cb428d4dcd5500340f044111646 826 Pfam PF13954 PapC N-terminal domain 27 170 6.3E-39 T 12-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YPK_0695 88b13cb428d4dcd5500340f044111646 826 Gene3D G3DSA:2.60.40.2070 749 824 1.9E-26 T 12-10-2018 YPK_0695 88b13cb428d4dcd5500340f044111646 826 Pfam PF13953 PapC C-terminal domain 750 807 1.7E-11 T 12-10-2018 IPR025949 PapC-like, C-terminal domain YPK_0695 88b13cb428d4dcd5500340f044111646 826 Gene3D G3DSA:2.60.40.3110 262 350 1.6E-30 T 12-10-2018 YPK_0695 88b13cb428d4dcd5500340f044111646 826 Gene3D G3DSA:3.10.20.410 25 146 6.5E-22 T 12-10-2018 YPK_0131 c5dbb1eff82fe1c9ac746f4cb50045c3 245 Pfam PF00072 Response regulator receiver domain 5 115 2.9E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0131 c5dbb1eff82fe1c9ac746f4cb50045c3 245 Gene3D G3DSA:3.40.50.2300 1 131 7.9E-34 T 12-10-2018 YPK_0131 c5dbb1eff82fe1c9ac746f4cb50045c3 245 Gene3D G3DSA:1.10.10.10 132 243 1.6E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0131 c5dbb1eff82fe1c9ac746f4cb50045c3 245 SMART SM00448 3 115 1.6E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0131 c5dbb1eff82fe1c9ac746f4cb50045c3 245 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 238 2.3E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_0131 c5dbb1eff82fe1c9ac746f4cb50045c3 245 SUPERFAMILY SSF46894 141 239 1.87E-25 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_0131 c5dbb1eff82fe1c9ac746f4cb50045c3 245 SMART SM00862 162 238 1.8E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 YPK_0131 c5dbb1eff82fe1c9ac746f4cb50045c3 245 SUPERFAMILY SSF52172 2 124 1.57E-35 T 12-10-2018 IPR011006 CheY-like superfamily YPK_2115 4073dc1d593fa6c8972c449c34a752d6 399 Gene3D G3DSA:3.90.1150.10 8 378 7.4E-144 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2115 4073dc1d593fa6c8972c449c34a752d6 399 Gene3D G3DSA:3.40.640.10 19 263 7.4E-144 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2115 4073dc1d593fa6c8972c449c34a752d6 399 SUPERFAMILY SSF53383 3 380 2.13E-97 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2115 4073dc1d593fa6c8972c449c34a752d6 399 PIRSF PIRSF005572 5 386 5.4E-125 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YPK_2115 4073dc1d593fa6c8972c449c34a752d6 399 Pfam PF00266 Aminotransferase class-V 8 371 2.5E-83 T 12-10-2018 IPR000192 Aminotransferase class V domain YPK_0910 d3ddeda28117688e28531ca0030ef5ea 658 Pfam PF10145 Phage-related minor tail protein 86 284 1.9E-20 T 12-10-2018 IPR010090 Phage tail tape measure protein YPK_0910 d3ddeda28117688e28531ca0030ef5ea 658 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 48 386 1.8E-13 T 12-10-2018 IPR010090 Phage tail tape measure protein YPK_2374 0958ae21fdd1393d21e0753ff05a5911 253 SMART SM00382 28 221 6.7E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2374 0958ae21fdd1393d21e0753ff05a5911 253 SUPERFAMILY SSF52540 4 243 3.17E-77 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2374 0958ae21fdd1393d21e0753ff05a5911 253 Gene3D G3DSA:3.40.50.300 1 251 7.1E-80 T 12-10-2018 YPK_2374 0958ae21fdd1393d21e0753ff05a5911 253 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2374 0958ae21fdd1393d21e0753ff05a5911 253 PIRSF PIRSF039085 1 249 9.5E-111 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 YPK_2374 0958ae21fdd1393d21e0753ff05a5911 253 Pfam PF00005 ABC transporter 19 173 5.1E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0729 9fb5ef36b8cbabd3394bae5d2aed4372 266 SUPERFAMILY SSF51161 168 220 6.52E-9 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily YPK_0729 9fb5ef36b8cbabd3394bae5d2aed4372 266 Gene3D G3DSA:2.160.10.10 166 264 2.7E-7 T 12-10-2018 YPK_0729 9fb5ef36b8cbabd3394bae5d2aed4372 266 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 184 212 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_0729 9fb5ef36b8cbabd3394bae5d2aed4372 266 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 172 200 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_0729 9fb5ef36b8cbabd3394bae5d2aed4372 266 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 178 206 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 YPK_3431 5e24a6020e3e9a403e7a73b793fd2582 241 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 232 5.0E-82 T 12-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 YPK_3431 5e24a6020e3e9a403e7a73b793fd2582 241 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 10 230 43.329 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 YPK_3431 5e24a6020e3e9a403e7a73b793fd2582 241 SUPERFAMILY SSF53448 11 231 3.47E-58 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3431 5e24a6020e3e9a403e7a73b793fd2582 241 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 105 112 - T 12-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 YPK_3431 5e24a6020e3e9a403e7a73b793fd2582 241 Gene3D G3DSA:3.90.550.10 6 238 3.2E-74 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3431 5e24a6020e3e9a403e7a73b793fd2582 241 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 12 230 8.4E-74 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 YPK_2051 7116b5b25f9908944ced481ff2151426 579 Gene3D G3DSA:3.30.750.24 437 563 1.1E-19 T 12-10-2018 IPR036513 STAS domain superfamily YPK_2051 7116b5b25f9908944ced481ff2151426 579 SUPERFAMILY SSF52091 445 537 3.73E-11 T 12-10-2018 IPR036513 STAS domain superfamily YPK_2051 7116b5b25f9908944ced481ff2151426 579 Pfam PF01740 STAS domain 445 531 5.1E-13 T 12-10-2018 IPR002645 STAS domain YPK_2051 7116b5b25f9908944ced481ff2151426 579 Pfam PF00916 Sulfate permease family 26 387 1.2E-86 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 YPK_0604 31f7a69b39f6c2d1b79baf69d94de198 134 Gene3D G3DSA:3.30.1330.40 2 134 1.0E-31 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YPK_0604 31f7a69b39f6c2d1b79baf69d94de198 134 SUPERFAMILY SSF55298 4 133 4.87E-28 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 YPK_0604 31f7a69b39f6c2d1b79baf69d94de198 134 Pfam PF01042 Endoribonuclease L-PSP 18 132 1.3E-21 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 YPK_0180 5937ed14835c5ee182f1e8e0895a523b 181 Gene3D G3DSA:3.90.79.10 7 181 6.0E-43 T 12-10-2018 YPK_0180 5937ed14835c5ee182f1e8e0895a523b 181 Pfam PF00293 NUDIX domain 46 139 1.1E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_0180 5937ed14835c5ee182f1e8e0895a523b 181 ProSitePatterns PS00893 Nudix box signature. 79 100 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_0180 5937ed14835c5ee182f1e8e0895a523b 181 SUPERFAMILY SSF55811 3 179 9.88E-37 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_2864 4dd2c98324a18d1ba2ff969e9ddbfaf3 384 PRINTS PR00173 Glutamate-aspartate symporter signature 50 70 2.6E-6 T 12-10-2018 YPK_2864 4dd2c98324a18d1ba2ff969e9ddbfaf3 384 PRINTS PR00173 Glutamate-aspartate symporter signature 319 338 2.6E-6 T 12-10-2018 YPK_2864 4dd2c98324a18d1ba2ff969e9ddbfaf3 384 PRINTS PR00173 Glutamate-aspartate symporter signature 222 241 2.6E-6 T 12-10-2018 YPK_2864 4dd2c98324a18d1ba2ff969e9ddbfaf3 384 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 2.6E-6 T 12-10-2018 YPK_2864 4dd2c98324a18d1ba2ff969e9ddbfaf3 384 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 195 375 2.4E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2864 4dd2c98324a18d1ba2ff969e9ddbfaf3 384 SUPERFAMILY SSF161098 173 371 2.49E-33 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2864 4dd2c98324a18d1ba2ff969e9ddbfaf3 384 Gene3D G3DSA:1.10.3720.10 169 377 5.6E-31 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3305 361753de42eb00d5df7a0075b6619774 453 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 7 263 4.5E-120 T 12-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 YPK_3305 361753de42eb00d5df7a0075b6619774 453 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 7 453 47.521 T 12-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 YPK_3305 361753de42eb00d5df7a0075b6619774 453 Pfam PF11973 NQRA C-terminal domain 268 316 5.4E-22 T 12-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 YPK_3305 361753de42eb00d5df7a0075b6619774 453 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 8 453 4.6E-189 T 12-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 YPK_1711 0706adf104f65ce160033b60d09de136 278 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 39 269 58.745 T 12-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 YPK_1711 0706adf104f65ce160033b60d09de136 278 Gene3D G3DSA:3.30.1600.10 55 191 1.3E-82 T 12-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily YPK_1711 0706adf104f65ce160033b60d09de136 278 SUPERFAMILY SSF52467 41 267 6.14E-75 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPK_1711 0706adf104f65ce160033b60d09de136 278 Gene3D G3DSA:3.40.50.1220 41 261 1.3E-82 T 12-10-2018 YPK_1711 0706adf104f65ce160033b60d09de136 278 Pfam PF02146 Sir2 family 46 219 6.9E-52 T 12-10-2018 IPR003000 Sirtuin family GO:0070403 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 Gene3D G3DSA:3.40.190.10 145 395 4.3E-146 T 12-10-2018 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 43 61 2.9E-90 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 158 177 2.9E-90 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 240 259 2.9E-90 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 77 95 2.9E-90 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 178 197 2.9E-90 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 306 327 2.9E-90 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 364 383 2.9E-90 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 PRINTS PR00181 Maltose binding protein signature 137 156 2.9E-90 T 12-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 SUPERFAMILY SSF53850 36 402 5.02E-93 T 12-10-2018 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 Gene3D G3DSA:3.40.190.10 55 364 4.3E-146 T 12-10-2018 YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 Pfam PF13416 Bacterial extracellular solute-binding protein 57 350 3.1E-40 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_0378 47f5265ac074807bb1422c1a1af57ff4 403 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 140 157 - T 12-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 YPK_1433 78446c0bd2c148ec8aa68cd5dfe374bd 71 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 2.9E-31 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor YPK_1433 78446c0bd2c148ec8aa68cd5dfe374bd 71 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 68 6.0E-25 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 2.0E-33 T 12-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 SUPERFAMILY SSF53187 179 496 4.71E-125 T 12-10-2018 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.266 T 12-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 Gene3D G3DSA:3.40.220.10 1 159 3.3E-59 T 12-10-2018 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 9.2E-123 T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 3.3E-54 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 3.3E-54 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 3.3E-54 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 3.3E-54 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 3.3E-54 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 SUPERFAMILY SSF52949 1 184 4.06E-52 T 12-10-2018 YPK_3679 7ad71a1f2c030b9dfec2d874630aa917 503 Gene3D G3DSA:3.40.630.10 181 498 1.2E-141 T 12-10-2018 YPK_1699 bfb8db4e828ec1e83ddf7360a491653f 288 Hamap MF_01604 Thiamine kinase [thiK]. 9 284 41.969 T 12-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 YPK_1699 bfb8db4e828ec1e83ddf7360a491653f 288 Pfam PF01636 Phosphotransferase enzyme family 31 234 8.4E-16 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase YPK_1699 bfb8db4e828ec1e83ddf7360a491653f 288 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 27 284 2.1E-108 T 12-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 YPK_1699 bfb8db4e828ec1e83ddf7360a491653f 288 SUPERFAMILY SSF56112 10 285 1.28E-37 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily YPK_1699 bfb8db4e828ec1e83ddf7360a491653f 288 Gene3D G3DSA:3.90.1200.10 108 285 3.9E-18 T 12-10-2018 YPK_1999 9768fb0c2de135cb610f4500e2df4c6e 327 Gene3D G3DSA:3.40.50.2300 132 317 2.2E-131 T 12-10-2018 YPK_1999 9768fb0c2de135cb610f4500e2df4c6e 327 SUPERFAMILY SSF53822 26 324 2.88E-67 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_1999 9768fb0c2de135cb610f4500e2df4c6e 327 PIRSF PIRSF002816 2 326 3.7E-149 T 12-10-2018 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 YPK_1999 9768fb0c2de135cb610f4500e2df4c6e 327 Gene3D G3DSA:3.40.50.2300 27 308 2.2E-131 T 12-10-2018 YPK_1999 9768fb0c2de135cb610f4500e2df4c6e 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 26 319 1.2E-85 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 1 143 36.707 T 12-10-2018 IPR023071 Transcriptional regulator, SlyA YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 96 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 Pfam PF01047 MarR family 29 87 5.1E-17 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 SMART SM00347 22 123 3.9E-26 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 8.5E-26 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 8.5E-26 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 8.5E-26 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 8.5E-26 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 Gene3D G3DSA:1.10.10.10 1 143 4.5E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1876 36ffde40e4aaaf2701b5fe41a53464bd 143 SUPERFAMILY SSF46785 4 139 5.41E-32 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2737 1c82ff8bf59269a6ca4186a388551976 223 SUPERFAMILY SSF51569 3 216 3.04E-78 T 12-10-2018 YPK_2737 1c82ff8bf59269a6ca4186a388551976 223 PIRSF PIRSF001357 1 222 4.2E-72 T 12-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_2737 1c82ff8bf59269a6ca4186a388551976 223 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 5 213 5.9E-83 T 12-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_2737 1c82ff8bf59269a6ca4186a388551976 223 Pfam PF01791 DeoC/LacD family aldolase 7 212 4.0E-18 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_2737 1c82ff8bf59269a6ca4186a388551976 223 Gene3D G3DSA:3.20.20.70 1 222 6.6E-92 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2737 1c82ff8bf59269a6ca4186a388551976 223 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 3 217 34.796 T 12-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 YPK_2737 1c82ff8bf59269a6ca4186a388551976 223 SMART SM01133 4 215 4.3E-95 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 YPK_1942 d25d4a46bcfc594342ba9ec62b796d90 464 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 1.4E-203 T 12-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 YPK_1942 d25d4a46bcfc594342ba9ec62b796d90 464 SUPERFAMILY SSF52467 289 463 5.61E-77 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPK_1942 d25d4a46bcfc594342ba9ec62b796d90 464 Gene3D G3DSA:3.40.50.1220 286 464 2.0E-86 T 12-10-2018 YPK_1942 d25d4a46bcfc594342ba9ec62b796d90 464 PIRSF PIRSF000204 1 464 1.9E-238 T 12-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 YPK_3569 438192214004372b5efc23860ffffb20 277 Pfam PF00226 DnaJ domain 214 273 2.1E-9 T 12-10-2018 IPR001623 DnaJ domain YPK_3569 438192214004372b5efc23860ffffb20 277 Gene3D G3DSA:1.10.287.110 189 275 2.7E-13 T 12-10-2018 IPR036869 Chaperone J-domain superfamily YPK_3569 438192214004372b5efc23860ffffb20 277 SUPERFAMILY SSF46565 132 273 5.75E-28 T 12-10-2018 IPR036869 Chaperone J-domain superfamily YPK_3569 438192214004372b5efc23860ffffb20 277 Gene3D G3DSA:1.10.3680.10 35 183 1.2E-20 T 12-10-2018 IPR029024 TerB-like YPK_3569 438192214004372b5efc23860ffffb20 277 Pfam PF05099 Tellurite resistance protein TerB 44 171 7.3E-12 T 12-10-2018 IPR007791 Co-chaperone DjlA, N-terminal YPK_3569 438192214004372b5efc23860ffffb20 277 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 276 40.417 T 12-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 YPK_3569 438192214004372b5efc23860ffffb20 277 PRINTS PR00625 DnaJ domain signature 213 231 2.8E-6 T 12-10-2018 IPR001623 DnaJ domain YPK_3569 438192214004372b5efc23860ffffb20 277 PRINTS PR00625 DnaJ domain signature 231 246 2.8E-6 T 12-10-2018 IPR001623 DnaJ domain YPK_3569 438192214004372b5efc23860ffffb20 277 PRINTS PR00625 DnaJ domain signature 255 275 2.8E-6 T 12-10-2018 IPR001623 DnaJ domain YPK_3569 438192214004372b5efc23860ffffb20 277 SMART SM00271 210 275 3.4E-15 T 12-10-2018 IPR001623 DnaJ domain YPK_2436 791316719f4a6a180c81a0c1a2c2af05 294 Pfam PF05425 Copper resistance protein D 189 287 1.4E-19 T 12-10-2018 IPR008457 Copper resistance protein D GO:0016021 YPK_0860 2a22188b1de9f97ca68ae2f98fe16467 198 SUPERFAMILY SSF100950 10 198 9.07E-59 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_0860 2a22188b1de9f97ca68ae2f98fe16467 198 Gene3D G3DSA:3.40.50.10420 3 197 2.8E-59 T 12-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily YPK_0860 2a22188b1de9f97ca68ae2f98fe16467 198 PIRSF PIRSF006806 7 195 5.2E-42 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPK_0860 2a22188b1de9f97ca68ae2f98fe16467 198 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 12 192 2.1E-52 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPK_0860 2a22188b1de9f97ca68ae2f98fe16467 198 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 6.5E-57 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase YPK_1837 636d6eb7a21d564145a86e4d75591ed9 128 Gene3D G3DSA:1.10.3730.20 38 126 2.7E-6 T 12-10-2018 YPK_1837 636d6eb7a21d564145a86e4d75591ed9 128 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 2 126 23.171 T 12-10-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YPK_1837 636d6eb7a21d564145a86e4d75591ed9 128 SUPERFAMILY SSF103481 42 124 4.58E-11 T 12-10-2018 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 Pfam PF00206 Lyase 13 345 1.0E-106 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 Gene3D G3DSA:1.10.275.10 6 142 9.8E-59 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 3.9E-5 T 12-10-2018 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00145 Argininosuccinate lyase family signature 137 159 3.9E-5 T 12-10-2018 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 3.9E-5 T 12-10-2018 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 SUPERFAMILY SSF48557 2 458 5.45E-142 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 6 474 7.1E-264 T 12-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 5.2E-27 T 12-10-2018 IPR000362 Fumarate lyase family YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 5.2E-27 T 12-10-2018 IPR000362 Fumarate lyase family YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 5.2E-27 T 12-10-2018 IPR000362 Fumarate lyase family YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 5.2E-27 T 12-10-2018 IPR000362 Fumarate lyase family YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 Gene3D G3DSA:1.20.200.10 143 410 1.7E-113 T 12-10-2018 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 Pfam PF10415 Fumarase C C-terminus 411 464 4.1E-17 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 Gene3D G3DSA:1.10.40.30 411 460 2.4E-29 T 12-10-2018 YPK_3825 a011ea4e410c777c0fcecc89ac979e22 478 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 YPK_1120 2dada48bf02ead2de30711120aef4765 121 Pfam PF06392 Acid shock protein repeat 47 67 3.9E-6 T 12-10-2018 IPR009435 Acid shock GO:0010447|GO:0042597 YPK_1120 2dada48bf02ead2de30711120aef4765 121 Hamap MF_00546 Acid shock protein [asr]. 1 121 18.537 T 12-10-2018 IPR023497 Acid shock protein YPK_0512 5f27a101a37945e59adc77b280409d37 272 Pfam PF00005 ABC transporter 29 175 4.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_0512 5f27a101a37945e59adc77b280409d37 272 SMART SM00382 36 233 3.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0512 5f27a101a37945e59adc77b280409d37 272 Gene3D G3DSA:3.40.50.300 8 252 5.1E-63 T 12-10-2018 YPK_0512 5f27a101a37945e59adc77b280409d37 272 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_0512 5f27a101a37945e59adc77b280409d37 272 SUPERFAMILY SSF52540 11 240 4.44E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2069 cb86ab3e6301b40f56ee0e9519d689e9 306 SUPERFAMILY SSF161098 91 291 3.27E-20 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2069 cb86ab3e6301b40f56ee0e9519d689e9 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 4.4E-38 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2069 cb86ab3e6301b40f56ee0e9519d689e9 306 Gene3D G3DSA:1.10.3720.10 85 299 1.1E-19 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3342 164cc24554b165e90af1f43511f5aa3e 228 SMART SM01144 42 228 2.8E-67 T 12-10-2018 IPR005636 DTW YPK_3342 164cc24554b165e90af1f43511f5aa3e 228 Pfam PF03942 DTW domain 45 227 2.5E-43 T 12-10-2018 IPR005636 DTW YPK_4022 38fb0b8983af7dd4a30fcde19438a816 246 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 1 246 58.617 T 12-10-2018 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 YPK_4022 38fb0b8983af7dd4a30fcde19438a816 246 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 60 237 1.5E-74 T 12-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 YPK_4022 38fb0b8983af7dd4a30fcde19438a816 246 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 65 231 5.9E-53 T 12-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 YPK_2835 9c549b41dfa07e8a74d767764b107af3 508 Pfam PF13347 MFS/sugar transport protein 13 444 1.2E-48 T 12-10-2018 YPK_2835 9c549b41dfa07e8a74d767764b107af3 508 Gene3D G3DSA:1.20.1250.20 3 440 9.6E-15 T 12-10-2018 YPK_2835 9c549b41dfa07e8a74d767764b107af3 508 SUPERFAMILY SSF103473 8 442 3.4E-30 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3762 bb5f92968a2333c97a258788359e8563 156 SUPERFAMILY SSF55252 82 151 2.88E-18 T 12-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 YPK_3762 bb5f92968a2333c97a258788359e8563 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 11 151 1.7E-45 T 12-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YPK_3762 bb5f92968a2333c97a258788359e8563 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 6.4E-25 T 12-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 YPK_3762 bb5f92968a2333c97a258788359e8563 156 SUPERFAMILY SSF46785 3 77 8.98E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_3762 bb5f92968a2333c97a258788359e8563 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 8.1E-21 T 12-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 YPK_3762 bb5f92968a2333c97a258788359e8563 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 2.5E-23 T 12-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YPK_3762 bb5f92968a2333c97a258788359e8563 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 2.5E-23 T 12-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YPK_3762 bb5f92968a2333c97a258788359e8563 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 2.5E-23 T 12-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YPK_3762 bb5f92968a2333c97a258788359e8563 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 2.5E-23 T 12-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YPK_3762 bb5f92968a2333c97a258788359e8563 156 Gene3D G3DSA:3.30.1360.40 79 156 1.0E-29 T 12-10-2018 YPK_3762 bb5f92968a2333c97a258788359e8563 156 Gene3D G3DSA:1.10.10.10 1 78 1.1E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3762 bb5f92968a2333c97a258788359e8563 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 2.0E-31 T 12-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 YPK_3762 bb5f92968a2333c97a258788359e8563 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 59.096 T 12-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 7 295 64.855 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 109 125 2.5E-34 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 2.5E-34 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 2.5E-34 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 2.5E-34 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 44 61 - T 12-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 139 169 - T 12-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 Gene3D G3DSA:3.20.20.70 6 299 1.3E-112 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 295 8.6E-119 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 Pfam PF00701 Dihydrodipicolinate synthetase family 8 295 1.2E-113 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 SUPERFAMILY SSF51569 4 299 7.75E-99 T 12-10-2018 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 SMART SM01130 7 297 5.2E-144 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_1362 7ce421fe399660c1d192bebce94b432b 299 PIRSF PIRSF001365 3 299 9.2E-95 T 12-10-2018 IPR002220 DapA-like GO:0016829 YPK_2760 14b42bb119c063557c68da418adda833 162 ProDom PD022058 PSAF MYFF 1 162 2.0E-89 T 12-10-2018 IPR035182 Protein of unknown function PsaF YPK_2760 14b42bb119c063557c68da418adda833 162 Pfam PF17550 Family of unknown function 1 162 2.2E-113 T 12-10-2018 IPR035182 Protein of unknown function PsaF YPK_0531 de95ee927aa1453fe4de57ffa219c340 329 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 28 321 2.8E-133 T 12-10-2018 IPR005911 Protein YhcC-like GO:0051536 YPK_0531 de95ee927aa1453fe4de57ffa219c340 329 SUPERFAMILY SSF102114 35 276 7.46E-45 T 12-10-2018 YPK_0531 de95ee927aa1453fe4de57ffa219c340 329 Pfam PF16199 Radical_SAM C-terminal domain 230 303 4.3E-18 T 12-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 YPK_0531 de95ee927aa1453fe4de57ffa219c340 329 SMART SM00729 45 269 1.5E-39 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_0531 de95ee927aa1453fe4de57ffa219c340 329 Gene3D G3DSA:3.80.30.20 64 292 5.1E-17 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe YPK_0531 de95ee927aa1453fe4de57ffa219c340 329 Pfam PF04055 Radical SAM superfamily 65 224 9.0E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_0149 700b818eee164719d38003302ec73eeb 428 SUPERFAMILY SSF53448 17 391 3.83E-77 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_0149 700b818eee164719d38003302ec73eeb 428 Gene3D G3DSA:3.90.550.10 1 300 9.7E-94 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_0149 700b818eee164719d38003302ec73eeb 428 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 12-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YPK_0149 700b818eee164719d38003302ec73eeb 428 Pfam PF00483 Nucleotidyl transferase 22 291 1.0E-65 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YPK_0149 700b818eee164719d38003302ec73eeb 428 Gene3D G3DSA:2.160.10.10 301 428 3.0E-41 T 12-10-2018 YPK_0149 700b818eee164719d38003302ec73eeb 428 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 1.1E-154 T 12-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YPK_0149 700b818eee164719d38003302ec73eeb 428 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 52.923 T 12-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YPK_0149 700b818eee164719d38003302ec73eeb 428 SUPERFAMILY SSF51161 313 413 9.15E-20 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily YPK_0149 700b818eee164719d38003302ec73eeb 428 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 211 221 - T 12-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YPK_0149 700b818eee164719d38003302ec73eeb 428 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 12-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 YPK_3430 95852ba68db050b5e226a97988b45328 162 Gene3D G3DSA:3.30.1330.50 1 162 1.0E-71 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YPK_3430 95852ba68db050b5e226a97988b45328 162 SUPERFAMILY SSF69765 1 158 2.49E-64 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YPK_3430 95852ba68db050b5e226a97988b45328 162 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 157 1.6E-69 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YPK_3430 95852ba68db050b5e226a97988b45328 162 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 158 36.623 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YPK_3430 95852ba68db050b5e226a97988b45328 162 Pfam PF02542 YgbB family 1 156 4.0E-66 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YPK_3430 95852ba68db050b5e226a97988b45328 162 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 37 52 - T 12-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 YPK_1709 40617b77ab17dad583182fa7924b2778 415 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 6 415 1.2E-212 T 12-10-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0016021|GO:0042953|GO:0042954|GO:0044874 YPK_1709 40617b77ab17dad583182fa7924b2778 415 Pfam PF02687 FtsX-like permease family 302 408 1.9E-11 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YPK_1709 40617b77ab17dad583182fa7924b2778 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 414 4.6E-159 T 12-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 YPK_1709 40617b77ab17dad583182fa7924b2778 415 Pfam PF12704 MacB-like periplasmic core domain 28 239 3.2E-15 T 12-10-2018 IPR025857 MacB-like periplasmic core domain YPK_1844 2a23e27f0094943077626fe2ef86c6c9 367 Pfam PF01594 AI-2E family transporter 17 346 8.4E-50 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like YPK_2625 ba36d30702c213f0343f87971d6e7394 684 Gene3D G3DSA:3.40.50.300 500 682 1.5E-25 T 12-10-2018 YPK_2625 ba36d30702c213f0343f87971d6e7394 684 Gene3D G3DSA:3.40.50.300 345 499 1.4E-21 T 12-10-2018 YPK_2625 ba36d30702c213f0343f87971d6e7394 684 SUPERFAMILY SSF52540 195 675 1.98E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2625 ba36d30702c213f0343f87971d6e7394 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 164 6.7E-65 T 12-10-2018 IPR022161 DNA helicase IV, N-terminal domain YPK_2625 ba36d30702c213f0343f87971d6e7394 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 490 1.2E-39 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 YPK_2625 ba36d30702c213f0343f87971d6e7394 684 Gene3D G3DSA:3.40.50.300 188 335 4.6E-28 T 12-10-2018 YPK_2625 ba36d30702c213f0343f87971d6e7394 684 Pfam PF13361 UvrD-like helicase C-terminal domain 587 659 5.6E-13 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 YPK_2632 28affa95fe6763a3c9309a5ea3ef7699 151 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 29.63 T 12-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 YPK_2632 28affa95fe6763a3c9309a5ea3ef7699 151 Pfam PF06303 MatP N-terminal domain 2 85 2.3E-44 T 12-10-2018 IPR035087 MatP, N-terminal YPK_2632 28affa95fe6763a3c9309a5ea3ef7699 151 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 131 5.0E-72 T 12-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 YPK_2632 28affa95fe6763a3c9309a5ea3ef7699 151 Gene3D G3DSA:1.20.1270.380 1 89 2.8E-48 T 12-10-2018 IPR038339 MatP, N-terminal domain superfamily YPK_2632 28affa95fe6763a3c9309a5ea3ef7699 151 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 1.2E-30 T 12-10-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain YPK_2632 28affa95fe6763a3c9309a5ea3ef7699 151 Gene3D G3DSA:1.10.1220.10 98 150 2.1E-34 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YPK_3455 0cfddd31f00c2842e21ea12c5e93511b 280 Gene3D G3DSA:3.40.50.1980 148 272 7.8E-31 T 12-10-2018 YPK_3455 0cfddd31f00c2842e21ea12c5e93511b 280 SUPERFAMILY SSF53807 28 269 2.79E-55 T 12-10-2018 YPK_3455 0cfddd31f00c2842e21ea12c5e93511b 280 Pfam PF01497 Periplasmic binding protein 31 226 1.4E-26 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_3455 0cfddd31f00c2842e21ea12c5e93511b 280 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 8 273 52.526 T 12-10-2018 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 YPK_3455 0cfddd31f00c2842e21ea12c5e93511b 280 Gene3D G3DSA:3.40.50.1980 27 146 9.8E-38 T 12-10-2018 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 Gene3D G3DSA:2.40.230.10 33 292 3.9E-106 T 12-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 103 119 6.1E-84 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 261 281 6.1E-84 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 126 145 6.1E-84 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 206 224 6.1E-84 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 6.1E-84 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 156 170 6.1E-84 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 81 98 6.1E-84 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 239 256 6.1E-84 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 SUPERFAMILY SSF56931 39 291 1.83E-94 T 12-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_3999 efacd3dde81d132b4963149daf0bc2ad 292 Pfam PF02253 Phospholipase A1 43 288 9.4E-99 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 Gene3D G3DSA:3.10.580.10 295 395 1.7E-9 T 12-10-2018 YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 Pfam PF00571 CBS domain 346 393 5.1E-5 T 12-10-2018 IPR000644 CBS domain YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 394 1.8E-172 T 12-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 SUPERFAMILY SSF52540 43 272 4.99E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 Pfam PF00005 ABC transporter 45 192 9.6E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 SUPERFAMILY SSF54631 276 396 6.19E-13 T 12-10-2018 YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 Gene3D G3DSA:3.40.50.300 33 291 7.4E-78 T 12-10-2018 YPK_1115 1cb645ee0a8811482ca3ade6c47ac6a5 399 SMART SM00382 53 242 1.1E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1930 2ee67b904335fd0083de1a4006d72078 184 Pfam PF01292 Prokaryotic cytochrome b561 11 180 5.5E-25 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 YPK_1930 2ee67b904335fd0083de1a4006d72078 184 SUPERFAMILY SSF81342 5 180 4.87E-37 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 SUPERFAMILY SSF53383 1 396 4.87E-116 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 Pfam PF00155 Aminotransferase class I and II 27 392 8.4E-92 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 1.2E-39 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 1.2E-39 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 1.2E-39 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 1.2E-39 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 Gene3D G3DSA:3.90.1150.10 11 391 5.9E-162 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 Gene3D G3DSA:3.40.640.10 45 315 5.9E-162 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_2650 8a27dfaa828ae33e121023dd21e8cbf4 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 YPK_0210 25591dcaf988b0f8a807668e06bf2613 232 PIRSF PIRSF028111 1 230 5.1E-76 T 12-10-2018 IPR016868 Bacteriophage B3, Orf5 YPK_0210 25591dcaf988b0f8a807668e06bf2613 232 Pfam PF10979 Protein of unknown function (DUF2786) 5 43 5.1E-13 T 12-10-2018 IPR024498 Domain of unknown function DUF2786 YPK_3647 260c45faca1f6b835286c5d20454ae67 397 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 122 360 1.0E-46 T 12-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 YPK_3647 260c45faca1f6b835286c5d20454ae67 397 Gene3D G3DSA:3.40.50.2000 214 392 5.4E-42 T 12-10-2018 YPK_3647 260c45faca1f6b835286c5d20454ae67 397 Gene3D G3DSA:3.40.50.2000 42 208 4.1E-36 T 12-10-2018 YPK_3647 260c45faca1f6b835286c5d20454ae67 397 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 49 389 2.1E-118 T 12-10-2018 IPR011916 Lipopolysaccharide heptosyltransferase III, putative YPK_3647 260c45faca1f6b835286c5d20454ae67 397 SUPERFAMILY SSF53756 49 391 2.48E-78 T 12-10-2018 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 Gene3D G3DSA:4.10.640.10 20 75 1.9E-28 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 Pfam PF01084 Ribosomal protein S18 19 68 4.8E-24 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 12-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 SUPERFAMILY SSF46911 3 74 1.07E-28 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 1.0E-22 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 2.3E-36 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.759 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-17 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-17 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-17 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3782 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-17 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_2450 bb12d50d4f3aeba30d1bf2096b86c522 199 Gene3D G3DSA:3.90.79.10 23 198 5.1E-47 T 12-10-2018 YPK_2450 bb12d50d4f3aeba30d1bf2096b86c522 199 Hamap MF_01592 Uncharacterized Nudix hydrolase NudL [nudL]. 4 199 53.074 T 12-10-2018 IPR023735 Uncharacterised nudix hydrolase NudL GO:0016818 YPK_2450 bb12d50d4f3aeba30d1bf2096b86c522 199 ProSitePatterns PS01293 Nudix CoA signature. 56 76 - T 12-10-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918|Reactome: R-HSA-9033241 YPK_2450 bb12d50d4f3aeba30d1bf2096b86c522 199 SUPERFAMILY SSF55811 27 194 6.91E-34 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_2450 bb12d50d4f3aeba30d1bf2096b86c522 199 Pfam PF00293 NUDIX domain 39 152 1.3E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_2834 ded6690094251fc3529f7c781c749b4c 329 SUPERFAMILY SSF56281 72 292 2.75E-37 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2834 ded6690094251fc3529f7c781c749b4c 329 Pfam PF12706 Beta-lactamase superfamily domain 90 286 2.7E-41 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_2834 ded6690094251fc3529f7c781c749b4c 329 Gene3D G3DSA:3.60.15.10 47 329 1.5E-85 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2834 ded6690094251fc3529f7c781c749b4c 329 PIRSF PIRSF038896 1 329 9.8E-99 T 12-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 YPK_3381 6d5f87381be59b13c4268c3b1c5f55e8 495 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 446 3.8E-48 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_3381 6d5f87381be59b13c4268c3b1c5f55e8 495 PIRSF PIRSF000538 3 493 2.2E-128 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_3381 6d5f87381be59b13c4268c3b1c5f55e8 495 Gene3D G3DSA:3.30.420.40 2 253 3.5E-79 T 12-10-2018 YPK_3381 6d5f87381be59b13c4268c3b1c5f55e8 495 Gene3D G3DSA:3.30.420.40 257 493 2.5E-69 T 12-10-2018 YPK_3381 6d5f87381be59b13c4268c3b1c5f55e8 495 SUPERFAMILY SSF53067 6 254 3.33E-74 T 12-10-2018 YPK_3381 6d5f87381be59b13c4268c3b1c5f55e8 495 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 252 1.3E-60 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_3381 6d5f87381be59b13c4268c3b1c5f55e8 495 SUPERFAMILY SSF53067 257 490 1.41E-61 T 12-10-2018 YPK_2993 8b8a49d2a3034cafc9680389370416f3 473 Pfam PF03573 outer membrane porin, OprD family 39 442 4.0E-22 T 12-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 YPK_2993 8b8a49d2a3034cafc9680389370416f3 473 Gene3D G3DSA:2.40.160.10 29 450 1.9E-32 T 12-10-2018 IPR023614 Porin domain superfamily YPK_0326 71e0bdf8546051a3bf191320536fac32 345 SUPERFAMILY SSF56194 205 342 7.19E-52 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_0326 71e0bdf8546051a3bf191320536fac32 345 Pfam PF01565 FAD binding domain 22 153 1.7E-24 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 YPK_0326 71e0bdf8546051a3bf191320536fac32 345 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 209 332 2.2E-35 T 12-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_0326 71e0bdf8546051a3bf191320536fac32 345 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 8 332 2.2E-104 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_0326 71e0bdf8546051a3bf191320536fac32 345 Gene3D G3DSA:3.30.465.10 72 221 1.2E-53 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 YPK_0326 71e0bdf8546051a3bf191320536fac32 345 Gene3D G3DSA:3.30.43.10 6 71 2.4E-16 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 YPK_0326 71e0bdf8546051a3bf191320536fac32 345 SUPERFAMILY SSF56176 7 194 1.45E-43 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 YPK_0326 71e0bdf8546051a3bf191320536fac32 345 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 345 86.794 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_0326 71e0bdf8546051a3bf191320536fac32 345 Gene3D G3DSA:3.90.78.10 222 345 1.3E-45 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 YPK_3249 92a5675e64e2f773b8f1be1b1c4863e0 196 Gene3D G3DSA:3.40.50.880 1 196 2.1E-55 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_3249 92a5675e64e2f773b8f1be1b1c4863e0 196 Pfam PF01965 DJ-1/PfpI family 4 169 2.4E-45 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 YPK_3249 92a5675e64e2f773b8f1be1b1c4863e0 196 SUPERFAMILY SSF52317 5 189 8.46E-49 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_3249 92a5675e64e2f773b8f1be1b1c4863e0 196 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 5 182 2.6E-65 T 12-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 YPK_0159 fef8e4010eb94f23ab96a5b2393d624e 109 Gene3D G3DSA:3.40.250.10 1 108 9.3E-29 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_0159 fef8e4010eb94f23ab96a5b2393d624e 109 SUPERFAMILY SSF52821 2 101 1.83E-27 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_0159 fef8e4010eb94f23ab96a5b2393d624e 109 Pfam PF00581 Rhodanese-like domain 15 98 1.1E-14 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_0159 fef8e4010eb94f23ab96a5b2393d624e 109 SMART SM00450 7 102 5.0E-21 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_0159 fef8e4010eb94f23ab96a5b2393d624e 109 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 32.525 T 12-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 YPK_0613 1441c1b47911a5a125c2e49f981424c3 200 Gene3D G3DSA:1.10.10.1400 11 77 4.3E-5 T 12-10-2018 IPR038713 Terminase small subunit, N-terminal domain superfamily YPK_0613 1441c1b47911a5a125c2e49f981424c3 200 Pfam PF03592 Terminase small subunit 14 167 2.4E-16 T 12-10-2018 IPR005335 Terminase small subunit GO:0006323 YPK_3982 13e373c4376a9f46072abdc975ed5a96 139 Gene3D G3DSA:2.40.50.660 35 97 1.7E-13 T 12-10-2018 YPK_3982 13e373c4376a9f46072abdc975ed5a96 139 Gene3D G3DSA:2.40.50.660 98 139 2.2E-8 T 12-10-2018 YPK_3982 13e373c4376a9f46072abdc975ed5a96 139 Pfam PF10694 Protein of unknown function (DUF2500) 5 132 3.2E-40 T 12-10-2018 IPR019635 Protein of unknown function DUF2500 YPK_0698 0819eb4c5d9b33e2951c6ebd7ef0f124 359 Gene3D G3DSA:3.40.50.1980 172 352 1.6E-61 T 12-10-2018 YPK_0698 0819eb4c5d9b33e2951c6ebd7ef0f124 359 Gene3D G3DSA:3.40.50.1980 54 171 5.2E-28 T 12-10-2018 YPK_0698 0819eb4c5d9b33e2951c6ebd7ef0f124 359 SUPERFAMILY SSF53807 52 333 1.1E-43 T 12-10-2018 YPK_0698 0819eb4c5d9b33e2951c6ebd7ef0f124 359 Pfam PF01497 Periplasmic binding protein 128 321 6.6E-21 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_0605 c729730cb4b9116eb163155a5ddb4d8c 100 Gene3D G3DSA:3.30.70.100 1 100 2.1E-41 T 12-10-2018 YPK_0605 c729730cb4b9116eb163155a5ddb4d8c 100 SUPERFAMILY SSF54909 3 96 1.98E-32 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_0605 c729730cb4b9116eb163155a5ddb4d8c 100 Pfam PF08803 Putative mono-oxygenase ydhR 4 99 1.7E-42 T 12-10-2018 IPR014910 Putative monooxygenase YdhR YPK_2474 2455053a6906736a69ca40bce64bc56b 69 PIRSF PIRSF002599 1 69 6.4E-26 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 YPK_2474 2455053a6906736a69ca40bce64bc56b 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 12-10-2018 IPR019844 Cold-shock conserved site YPK_2474 2455053a6906736a69ca40bce64bc56b 69 SUPERFAMILY SSF50249 3 68 2.06E-26 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_2474 2455053a6906736a69ca40bce64bc56b 69 Gene3D G3DSA:2.40.50.140 1 69 1.8E-32 T 12-10-2018 YPK_2474 2455053a6906736a69ca40bce64bc56b 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.8E-33 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2474 2455053a6906736a69ca40bce64bc56b 69 SMART SM00357 5 69 8.3E-32 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 YPK_2474 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2474 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2474 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 6 21 1.1E-18 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 YPK_2154 a3a02630da9bb987339ce9861dfaac31 191 SUPERFAMILY SSF54593 4 180 2.02E-69 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_2154 a3a02630da9bb987339ce9861dfaac31 191 Gene3D G3DSA:3.10.180.10 2 185 1.5E-67 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_2154 a3a02630da9bb987339ce9861dfaac31 191 Pfam PF06185 YecM protein 10 180 2.9E-69 T 12-10-2018 IPR010393 Protein of unknown function DUF991 YPK_3786 d57b86ae786321a7aa075d2d383f719a 249 Pfam PF00326 Prolyl oligopeptidase family 89 234 2.7E-13 T 12-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 YPK_3786 d57b86ae786321a7aa075d2d383f719a 249 SUPERFAMILY SSF53474 14 249 1.65E-37 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3786 d57b86ae786321a7aa075d2d383f719a 249 Gene3D G3DSA:3.40.50.1820 2 249 3.6E-58 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1670 e86ceec10f7a002e0fe85964d8eb4dce 37 Pfam PF10968 Protein of unknown function (DUF2770) 2 37 1.6E-17 T 12-10-2018 IPR024494 Protein of unknown function DUF2770 YPK_3599 9be3e783c4c2bd5df848b078e94035dc 317 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 313 2.1E-101 T 12-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YPK_3599 9be3e783c4c2bd5df848b078e94035dc 317 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YPK_3599 9be3e783c4c2bd5df848b078e94035dc 317 Gene3D G3DSA:3.20.20.70 2 317 1.5E-148 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3599 9be3e783c4c2bd5df848b078e94035dc 317 TIGRFAM TIGR00874 talAB: transaldolase 4 316 1.6E-162 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YPK_3599 9be3e783c4c2bd5df848b078e94035dc 317 SUPERFAMILY SSF51569 1 316 9.63E-116 T 12-10-2018 YPK_3599 9be3e783c4c2bd5df848b078e94035dc 317 Hamap MF_00492 Transaldolase [tal]. 2 317 51.702 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YPK_3599 9be3e783c4c2bd5df848b078e94035dc 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 Pfam PF13953 PapC C-terminal domain 788 849 5.8E-18 T 12-10-2018 IPR025949 PapC-like, C-terminal domain YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 SUPERFAMILY SSF141729 63 181 4.84E-30 T 12-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 Gene3D G3DSA:2.60.40.2070 783 870 1.4E-12 T 12-10-2018 YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 Gene3D G3DSA:2.60.40.2610 690 780 8.9E-30 T 12-10-2018 YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 Pfam PF00577 Outer membrane usher protein 206 775 2.1E-167 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 317 327 - T 12-10-2018 IPR018030 Fimbrial membrane usher, conserved site YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 Gene3D G3DSA:2.60.40.3110 275 364 8.2E-38 T 12-10-2018 YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 Pfam PF13954 PapC N-terminal domain 45 189 3.7E-38 T 12-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YPK_1788 a2ca0730e9259104521c6e627ee7b89e 870 Gene3D G3DSA:3.10.20.410 44 167 2.5E-26 T 12-10-2018 YPK_0900 a2ed41d4a41d33415f690a23a8f1931b 232 Pfam PF05944 Phage small terminase subunit 36 164 4.0E-39 T 12-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 YPK_1812 518286dc81da5b21af433b91689c2e51 297 Pfam PF00950 ABC 3 transport family 14 268 1.5E-98 T 12-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 YPK_1812 518286dc81da5b21af433b91689c2e51 297 Gene3D G3DSA:1.10.3470.10 46 272 2.4E-9 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_1812 518286dc81da5b21af433b91689c2e51 297 SUPERFAMILY SSF81345 5 266 2.62E-45 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2794 1116155f8acd2f4a494746f97b094da0 585 SUPERFAMILY SSF52540 50 359 8.18E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2794 1116155f8acd2f4a494746f97b094da0 585 SMART SM00487 1 185 1.4E-16 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_2794 1116155f8acd2f4a494746f97b094da0 585 SUPERFAMILY SSF57829 424 466 3.3E-7 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 YPK_2794 1116155f8acd2f4a494746f97b094da0 585 Gene3D G3DSA:3.40.50.300 1 168 1.9E-28 T 12-10-2018 YPK_2794 1116155f8acd2f4a494746f97b094da0 585 Pfam PF00271 Helicase conserved C-terminal domain 242 343 9.5E-12 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2794 1116155f8acd2f4a494746f97b094da0 585 SMART SM00490 263 345 1.0E-9 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_2794 1116155f8acd2f4a494746f97b094da0 585 Gene3D G3DSA:3.40.50.300 186 376 1.4E-33 T 12-10-2018 YPK_2794 1116155f8acd2f4a494746f97b094da0 585 Pfam PF04851 Type III restriction enzyme, res subunit 3 155 5.1E-24 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 SUPERFAMILY SSF56634 4 478 1.44E-210 T 12-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 PRINTS PR00067 Catalase signature 21 44 1.1E-70 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 PRINTS PR00067 Catalase signature 321 347 1.1E-70 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 PRINTS PR00067 Catalase signature 105 122 1.1E-70 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 PRINTS PR00067 Catalase signature 289 316 1.1E-70 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 PRINTS PR00067 Catalase signature 124 142 1.1E-70 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 PRINTS PR00067 Catalase signature 84 102 1.1E-70 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 Gene3D G3DSA:2.40.180.10 2 479 2.5E-232 T 12-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 SMART SM01060 8 392 1.8E-280 T 12-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 Pfam PF06628 Catalase-related immune-responsive 416 476 1.6E-21 T 12-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 PIRSF PIRSF038928 1 479 2.8E-219 T 12-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 ProSitePatterns PS00438 Catalase proximal active site signature. 44 60 - T 12-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_2855 df6eca768586c9b6dc7a21235ff4864d 479 Pfam PF00199 Catalase 8 388 3.2E-187 T 12-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 YPK_3863 529a47e44590852b3b26886fdad28095 288 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.4 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 YPK_3863 529a47e44590852b3b26886fdad28095 288 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 287 2.1E-111 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 YPK_3863 529a47e44590852b3b26886fdad28095 288 Pfam PF01040 UbiA prenyltransferase family 28 270 5.0E-67 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 YPK_3863 529a47e44590852b3b26886fdad28095 288 Gene3D G3DSA:1.10.357.140 23 183 1.9E-41 T 12-10-2018 YPK_3863 529a47e44590852b3b26886fdad28095 288 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 67 89 - T 12-10-2018 IPR030470 UbiA prenyltransferase conserved site YPK_2467 eca189c194d2d1dbdafd73a1e618fedb 153 PIRSF PIRSF020687 1 152 2.2E-73 T 12-10-2018 IPR009328 Protein of unknown function DUF986 YPK_2467 eca189c194d2d1dbdafd73a1e618fedb 153 Pfam PF06173 Protein of unknown function (DUF986) 4 151 4.4E-66 T 12-10-2018 IPR009328 Protein of unknown function DUF986 YPK_2467 eca189c194d2d1dbdafd73a1e618fedb 153 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 22 144 2.0E-57 T 12-10-2018 IPR009328 Protein of unknown function DUF986 YPK_2467 eca189c194d2d1dbdafd73a1e618fedb 153 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 33.576 T 12-10-2018 IPR009328 Protein of unknown function DUF986 YPK_3409 2a4b243f9ba4d55d345eb340f0914073 698 Pfam PF07715 TonB-dependent Receptor Plug Domain 38 151 3.0E-27 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_3409 2a4b243f9ba4d55d345eb340f0914073 698 Gene3D G3DSA:2.40.170.20 162 698 2.0E-127 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_3409 2a4b243f9ba4d55d345eb340f0914073 698 SUPERFAMILY SSF56935 27 698 2.93E-123 T 12-10-2018 YPK_3409 2a4b243f9ba4d55d345eb340f0914073 698 Pfam PF00593 TonB dependent receptor 223 697 3.4E-57 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_3409 2a4b243f9ba4d55d345eb340f0914073 698 Gene3D G3DSA:2.170.130.10 25 156 1.2E-39 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_3338 eeb8abfac16ff207c9333b0d04288d02 390 Pfam PF00529 HlyD membrane-fusion protein of T1SS 36 346 8.9E-15 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_3338 eeb8abfac16ff207c9333b0d04288d02 390 Gene3D G3DSA:1.10.287.470 95 186 2.0E-13 T 12-10-2018 YPK_3338 eeb8abfac16ff207c9333b0d04288d02 390 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 20 345 2.9E-135 T 12-10-2018 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 YPK_3338 eeb8abfac16ff207c9333b0d04288d02 390 SUPERFAMILY SSF111369 59 113 1.57E-6 T 12-10-2018 YPK_3338 eeb8abfac16ff207c9333b0d04288d02 390 Gene3D G3DSA:2.40.50.100 60 94 2.0E-13 T 12-10-2018 YPK_3338 eeb8abfac16ff207c9333b0d04288d02 390 SUPERFAMILY SSF111369 194 269 1.31E-9 T 12-10-2018 YPK_3338 eeb8abfac16ff207c9333b0d04288d02 390 Gene3D G3DSA:2.40.30.170 232 355 1.9E-34 T 12-10-2018 YPK_3338 eeb8abfac16ff207c9333b0d04288d02 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 289 1.8E-12 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPK_3432 1251447bf4ef911a32b51277abc58921 106 Gene3D G3DSA:1.20.5.400 21 63 2.3E-13 T 12-10-2018 YPK_3432 1251447bf4ef911a32b51277abc58921 106 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 35.701 T 12-10-2018 IPR023081 Cell division protein FtsB YPK_3432 1251447bf4ef911a32b51277abc58921 106 Pfam PF04977 Septum formation initiator 11 89 6.1E-30 T 12-10-2018 IPR007060 Septum formation initiator FtsL/DivIC YPK_1350 c31c78a31fe874e80d233a41b15421fa 212 Pfam PF00551 Formyl transferase 2 182 7.8E-67 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_1350 c31c78a31fe874e80d233a41b15421fa 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_1350 c31c78a31fe874e80d233a41b15421fa 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 32.16 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 YPK_1350 c31c78a31fe874e80d233a41b15421fa 212 Gene3D G3DSA:3.40.50.170 2 212 9.9E-90 T 12-10-2018 YPK_1350 c31c78a31fe874e80d233a41b15421fa 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 191 3.8E-81 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 YPK_1350 c31c78a31fe874e80d233a41b15421fa 212 SUPERFAMILY SSF53328 2 201 2.22E-68 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 YPK_0930 0b6453136a4209f9793d6546862e3d5d 531 Gene3D G3DSA:2.20.70.120 445 473 1.9E-5 T 12-10-2018 YPK_0930 0b6453136a4209f9793d6546862e3d5d 531 Pfam PF12571 Phage tail-collar fibre protein 2 157 3.2E-34 T 12-10-2018 IPR022225 Phage tail fibre protein YPK_0930 0b6453136a4209f9793d6546862e3d5d 531 Pfam PF03406 Phage tail fibre repeat 306 333 1.9E-9 T 12-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 YPK_3478 f870cfcd61ba4759584b0837339cb8cf 291 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 113 120 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YPK_3478 f870cfcd61ba4759584b0837339cb8cf 291 Pfam PF00484 Carbonic anhydrase 109 258 3.5E-49 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YPK_3478 f870cfcd61ba4759584b0837339cb8cf 291 Gene3D G3DSA:3.40.1050.10 70 290 2.4E-85 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 YPK_3478 f870cfcd61ba4759584b0837339cb8cf 291 SUPERFAMILY SSF53056 55 283 2.22E-75 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 YPK_3478 f870cfcd61ba4759584b0837339cb8cf 291 SMART SM00947 101 263 4.1E-65 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YPK_3478 f870cfcd61ba4759584b0837339cb8cf 291 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 153 173 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 SUPERFAMILY SSF52540 332 550 5.43E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 Gene3D G3DSA:1.10.10.60 569 613 1.5E-12 T 12-10-2018 YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 Pfam PF00158 Sigma-54 interaction domain 328 483 3.0E-58 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 Gene3D G3DSA:3.30.450.40 15 201 2.3E-46 T 12-10-2018 IPR029016 GAF-like domain superfamily YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 SMART SM00382 336 480 6.9E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 Pfam PF02954 Bacterial regulatory protein, Fis family 575 607 2.9E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 Gene3D G3DSA:1.10.8.60 493 563 1.5E-9 T 12-10-2018 YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 Gene3D G3DSA:3.40.50.300 322 488 2.4E-55 T 12-10-2018 YPK_1975 b9a17e7e0fbb41c34f139cb998407add 614 SUPERFAMILY SSF46689 527 608 5.97E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2927 e56da8bad9c8ceb97213fb4c79c37654 236 SMART SM00382 26 218 4.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2927 e56da8bad9c8ceb97213fb4c79c37654 236 Gene3D G3DSA:3.40.50.300 1 232 2.0E-51 T 12-10-2018 YPK_2927 e56da8bad9c8ceb97213fb4c79c37654 236 SUPERFAMILY SSF52540 2 227 5.33E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2927 e56da8bad9c8ceb97213fb4c79c37654 236 Pfam PF00005 ABC transporter 19 164 1.1E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3254 9f85ea1aba9f6537569324de4ee61718 161 PIRSF PIRSF006162 4 161 5.5E-62 T 12-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 YPK_3254 9f85ea1aba9f6537569324de4ee61718 161 Pfam PF04608 Phosphatidylglycerophosphatase A 15 155 8.6E-55 T 12-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 YPK_3254 9f85ea1aba9f6537569324de4ee61718 161 SUPERFAMILY SSF101307 8 157 1.14E-50 T 12-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 YPK_3414 031fe6df0282b4f289de96d608ff3ee1 87 Pfam PF04703 FaeA-like protein 34 70 1.3E-4 T 12-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 YPK_3414 031fe6df0282b4f289de96d608ff3ee1 87 Gene3D G3DSA:1.10.10.10 22 81 1.1E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2633 14c02432c2ea729aef4753fa3a915276 540 SUPERFAMILY SSF54211 304 495 3.15E-35 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_2633 14c02432c2ea729aef4753fa3a915276 540 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 390 491 3.4E-10 T 12-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 YPK_2633 14c02432c2ea729aef4753fa3a915276 540 Pfam PF13654 AAA domain 89 278 2.2E-20 T 12-10-2018 YPK_2633 14c02432c2ea729aef4753fa3a915276 540 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 387 406 7.7E-9 T 12-10-2018 YPK_2633 14c02432c2ea729aef4753fa3a915276 540 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 417 436 7.7E-9 T 12-10-2018 YPK_2633 14c02432c2ea729aef4753fa3a915276 540 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 447 465 7.7E-9 T 12-10-2018 YPK_2633 14c02432c2ea729aef4753fa3a915276 540 Gene3D G3DSA:3.30.230.10 280 521 1.5E-96 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YPK_2633 14c02432c2ea729aef4753fa3a915276 540 Gene3D G3DSA:3.40.50.300 69 192 4.0E-12 T 12-10-2018 YPK_2749 d5701d2a8fd4da584bfa8ece55e68096 262 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2749 d5701d2a8fd4da584bfa8ece55e68096 262 Gene3D G3DSA:3.40.50.300 5 254 6.5E-58 T 12-10-2018 YPK_2749 d5701d2a8fd4da584bfa8ece55e68096 262 Pfam PF00005 ABC transporter 28 165 3.7E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2749 d5701d2a8fd4da584bfa8ece55e68096 262 SMART SM00382 30 215 8.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2749 d5701d2a8fd4da584bfa8ece55e68096 262 SUPERFAMILY SSF52540 5 229 9.82E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2620 282365fc364266a1231ee08d4e682e51 396 Gene3D G3DSA:3.30.750.80 73 181 2.1E-37 T 12-10-2018 YPK_2620 282365fc364266a1231ee08d4e682e51 396 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 174 370 4.2E-27 T 12-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 YPK_2620 282365fc364266a1231ee08d4e682e51 396 SUPERFAMILY SSF88697 4 72 8.45E-16 T 12-10-2018 IPR015947 PUA-like superfamily YPK_2620 282365fc364266a1231ee08d4e682e51 396 SUPERFAMILY SSF53335 79 392 2.39E-70 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_2620 282365fc364266a1231ee08d4e682e51 396 Gene3D G3DSA:3.40.50.150 183 396 6.1E-69 T 12-10-2018 YPK_2620 282365fc364266a1231ee08d4e682e51 396 SMART SM00359 3 88 5.9E-12 T 12-10-2018 IPR002478 PUA domain GO:0003723 YPK_2620 282365fc364266a1231ee08d4e682e51 396 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 396 67.868 T 12-10-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 YPK_2620 282365fc364266a1231ee08d4e682e51 396 Gene3D G3DSA:2.30.130.10 1 72 3.3E-29 T 12-10-2018 IPR036974 PUA domain superfamily GO:0003723 YPK_0375 addd5a07e6a65e62b6e165a69db113cc 135 PIRSF PIRSF029598 1 135 2.1E-48 T 12-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 YPK_0375 addd5a07e6a65e62b6e165a69db113cc 135 Pfam PF06146 Phosphate-starvation-inducible E 60 122 6.7E-16 T 12-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like YPK_0375 addd5a07e6a65e62b6e165a69db113cc 135 Hamap MF_01048 Protein PsiE [psiE]. 1 135 25.941 T 12-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 YPK_1886 cb09c99a4ae77080c09ab9cdf7c47dfc 511 Gene3D G3DSA:1.20.1250.20 21 497 4.2E-111 T 12-10-2018 YPK_1886 cb09c99a4ae77080c09ab9cdf7c47dfc 511 Pfam PF00854 POT family 99 455 7.3E-88 T 12-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 YPK_1886 cb09c99a4ae77080c09ab9cdf7c47dfc 511 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 162 174 - T 12-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 YPK_1886 cb09c99a4ae77080c09ab9cdf7c47dfc 511 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 11 500 51.957 T 12-10-2018 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0016020|GO:1904680 YPK_1886 cb09c99a4ae77080c09ab9cdf7c47dfc 511 SUPERFAMILY SSF103473 28 498 6.63E-28 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1886 cb09c99a4ae77080c09ab9cdf7c47dfc 511 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 27 496 1.2E-137 T 12-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 YPK_0135 e0e060e7d178d59354563456fd0ea608 438 PIRSF PIRSF002746 1 438 4.5E-159 T 12-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YPK_0135 e0e060e7d178d59354563456fd0ea608 438 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 3.1E-196 T 12-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YPK_0135 e0e060e7d178d59354563456fd0ea608 438 Pfam PF02447 GntP family permease 1 437 2.3E-182 T 12-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YPK_0803 9e361dca00c5ea66c6b5fec0e8ad25ca 163 Pfam PF05638 Type VI secretion system effector, Hcp 6 146 2.1E-35 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_0803 9e361dca00c5ea66c6b5fec0e8ad25ca 163 Gene3D G3DSA:2.30.110.20 1 163 1.7E-79 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_0803 9e361dca00c5ea66c6b5fec0e8ad25ca 163 SUPERFAMILY SSF141452 2 160 3.92E-43 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_0803 9e361dca00c5ea66c6b5fec0e8ad25ca 163 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 160 3.7E-49 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_0269 8a3fc129b7a4b7506ef3a982cb5c6baa 72 Hamap MF_00715 Protein SlyX [slyX]. 5 72 16.847 T 12-10-2018 IPR007236 SlyX YPK_0269 8a3fc129b7a4b7506ef3a982cb5c6baa 72 Pfam PF04102 SlyX 6 72 5.6E-24 T 12-10-2018 IPR007236 SlyX YPK_2790 4d44c3e1a1c9ab52894688b9cf30be18 114 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 1 114 6.0E-63 T 12-10-2018 IPR020489 Uncharacterised protein family YejG YPK_2790 4d44c3e1a1c9ab52894688b9cf30be18 114 Pfam PF13989 YejG-like protein 4 108 2.1E-51 T 12-10-2018 IPR020489 Uncharacterised protein family YejG YPK_1800 f86abf1752e1c8ea365bbf35274ac528 306 Gene3D G3DSA:1.10.3720.10 24 297 3.6E-63 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1800 f86abf1752e1c8ea365bbf35274ac528 306 SUPERFAMILY SSF161098 30 306 6.54E-71 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1800 f86abf1752e1c8ea365bbf35274ac528 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 125 300 2.6E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 SMART SM00098 75 481 5.1E-189 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 PRINTS PR00113 Alkaline phosphatase signature 231 241 4.1E-47 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 PRINTS PR00113 Alkaline phosphatase signature 168 188 4.1E-47 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 PRINTS PR00113 Alkaline phosphatase signature 131 146 4.1E-47 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 PRINTS PR00113 Alkaline phosphatase signature 330 359 4.1E-47 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 PRINTS PR00113 Alkaline phosphatase signature 74 94 4.1E-47 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 SUPERFAMILY SSF53649 47 480 8.51E-132 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 ProSitePatterns PS00123 Alkaline phosphatase active site. 131 139 - T 12-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 Gene3D G3DSA:3.40.720.10 35 481 4.8E-146 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_1946 8d5a0c3a0cf248f594509bf0608e7d8d 481 Pfam PF00245 Alkaline phosphatase 75 440 4.9E-118 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 YPK_0136 86cf76bfffc5aa017a309195a446556e 167 SUPERFAMILY SSF52540 3 165 2.47E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0136 86cf76bfffc5aa017a309195a446556e 167 Pfam PF01202 Shikimate kinase 12 165 1.1E-14 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_0136 86cf76bfffc5aa017a309195a446556e 167 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 163 3.6E-65 T 12-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 YPK_0136 86cf76bfffc5aa017a309195a446556e 167 Gene3D G3DSA:3.40.50.300 2 167 7.4E-68 T 12-10-2018 YPK_0136 86cf76bfffc5aa017a309195a446556e 167 PRINTS PR01100 Shikimate kinase family signature 100 117 5.6E-6 T 12-10-2018 YPK_0136 86cf76bfffc5aa017a309195a446556e 167 PRINTS PR01100 Shikimate kinase family signature 6 21 5.6E-6 T 12-10-2018 YPK_2360 8e70d14b5607b83e91c65dd02ddf6add 183 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 175 183 - T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2360 8e70d14b5607b83e91c65dd02ddf6add 183 SUPERFAMILY SSF56925 29 183 1.1E-26 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_2360 8e70d14b5607b83e91c65dd02ddf6add 183 Pfam PF13505 Outer membrane protein beta-barrel domain 7 183 5.3E-22 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel YPK_2360 8e70d14b5607b83e91c65dd02ddf6add 183 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 144 165 1.0E-26 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2360 8e70d14b5607b83e91c65dd02ddf6add 183 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 55 67 1.0E-26 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2360 8e70d14b5607b83e91c65dd02ddf6add 183 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 98 121 1.0E-26 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2360 8e70d14b5607b83e91c65dd02ddf6add 183 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 171 182 1.0E-26 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_2360 8e70d14b5607b83e91c65dd02ddf6add 183 Gene3D G3DSA:2.40.160.20 23 183 9.8E-50 T 12-10-2018 YPK_0414 fb5ca35d188df8a9d417bf49c4902e14 376 SUPERFAMILY SSF51735 17 176 3.94E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0414 fb5ca35d188df8a9d417bf49c4902e14 376 Gene3D G3DSA:3.40.50.720 22 148 7.8E-25 T 12-10-2018 YPK_0414 fb5ca35d188df8a9d417bf49c4902e14 376 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 23 145 7.8E-14 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 YPK_0414 fb5ca35d188df8a9d417bf49c4902e14 376 Gene3D G3DSA:3.30.360.10 149 372 9.1E-32 T 12-10-2018 YPK_0414 fb5ca35d188df8a9d417bf49c4902e14 376 SUPERFAMILY SSF55347 152 312 5.01E-16 T 12-10-2018 YPK_3474 7806a45f612c60697b27ed7cc6678492 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.3E-47 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YPK_3474 7806a45f612c60697b27ed7cc6678492 126 PIRSF PIRSF006246 1 125 1.2E-52 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YPK_3474 7806a45f612c60697b27ed7cc6678492 126 SUPERFAMILY SSF50692 1 115 2.86E-46 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily YPK_3474 7806a45f612c60697b27ed7cc6678492 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 1.0E-65 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YPK_3474 7806a45f612c60697b27ed7cc6678492 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 4.8E-60 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YPK_3474 7806a45f612c60697b27ed7cc6678492 126 Gene3D G3DSA:2.40.40.20 1 126 6.6E-54 T 12-10-2018 YPK_3474 7806a45f612c60697b27ed7cc6678492 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 69.86 T 12-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 YPK_3949 ecb5286b8ee8241056eec30c33f5aade 281 Pfam PF13350 Tyrosine phosphatase family 12 281 1.7E-56 T 12-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type YPK_3949 ecb5286b8ee8241056eec30c33f5aade 281 Gene3D G3DSA:3.90.190.10 13 280 8.2E-52 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like YPK_3949 ecb5286b8ee8241056eec30c33f5aade 281 SUPERFAMILY SSF52799 12 280 1.94E-50 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 SUPERFAMILY SSF64518 1 400 1.44E-71 T 12-10-2018 YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 1.3E-27 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 PRINTS PR00207 Flagellin signature 111 134 3.3E-13 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 PRINTS PR00207 Flagellin signature 37 54 3.3E-13 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 PRINTS PR00207 Flagellin signature 76 95 3.3E-13 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 Gene3D G3DSA:1.10.8.410 351 400 9.2E-10 T 12-10-2018 YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 Gene3D G3DSA:1.20.1330.10 45 350 1.3E-50 T 12-10-2018 YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 Gene3D G3DSA:3.30.70.2120 178 298 1.3E-50 T 12-10-2018 YPK_0726 f216bad3ff07afaf6d1c9169977d92c0 401 Pfam PF00700 Bacterial flagellin C-terminal helical region 316 398 9.6E-16 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 YPK_1243 e1c7adadb2ab02a91cfe3ed993c25fde 603 Gene3D G3DSA:3.80.10.10 372 592 3.0E-8 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily YPK_1243 e1c7adadb2ab02a91cfe3ed993c25fde 603 Pfam PF11041 Protein of unknown function (DUF2612) 85 168 8.3E-18 T 12-10-2018 IPR021283 Protein of unknown function DUF2612 YPK_1243 e1c7adadb2ab02a91cfe3ed993c25fde 603 Pfam PF11041 Protein of unknown function (DUF2612) 15 77 3.6E-13 T 12-10-2018 IPR021283 Protein of unknown function DUF2612 YPK_1243 e1c7adadb2ab02a91cfe3ed993c25fde 603 SUPERFAMILY SSF52058 377 522 3.74E-6 T 12-10-2018 YPK_2278 941430b8a803ae83bb9f3d0d54c8bc19 275 SUPERFAMILY SSF161098 11 275 5.63E-69 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2278 941430b8a803ae83bb9f3d0d54c8bc19 275 Gene3D G3DSA:1.10.3720.10 8 267 3.3E-60 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2278 941430b8a803ae83bb9f3d0d54c8bc19 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 270 3.2E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2537 c5a933213b11189272ebe3db38075353 296 SUPERFAMILY SSF53448 1 284 5.63E-60 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_2537 c5a933213b11189272ebe3db38075353 296 Pfam PF00483 Nucleotidyl transferase 5 272 2.8E-24 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YPK_2537 c5a933213b11189272ebe3db38075353 296 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 272 3.8E-114 T 12-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 YPK_2537 c5a933213b11189272ebe3db38075353 296 Gene3D G3DSA:3.90.550.10 1 296 1.1E-85 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3045 beeb5eb5543e48c09b412c4473bec888 309 Pfam PF13407 Periplasmic binding protein domain 24 277 1.3E-54 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_3045 beeb5eb5543e48c09b412c4473bec888 309 Gene3D G3DSA:3.40.50.2300 122 262 5.9E-73 T 12-10-2018 YPK_3045 beeb5eb5543e48c09b412c4473bec888 309 SUPERFAMILY SSF53822 22 300 6.28E-71 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_3045 beeb5eb5543e48c09b412c4473bec888 309 Gene3D G3DSA:3.40.50.2300 34 282 5.9E-73 T 12-10-2018 YPK_1641 852a3a5349033c1e30b212c13ebba89b 414 SUPERFAMILY SSF50182 187 252 2.81E-12 T 12-10-2018 IPR010920 LSM domain superfamily YPK_1641 852a3a5349033c1e30b212c13ebba89b 414 Pfam PF00924 Mechanosensitive ion channel 143 398 2.7E-55 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 YPK_1641 852a3a5349033c1e30b212c13ebba89b 414 Gene3D G3DSA:2.30.30.60 201 244 2.7E-5 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily YPK_2038 0f85e307ff8050920902dae56d801a53 196 Gene3D G3DSA:3.40.50.300 6 196 5.6E-71 T 12-10-2018 YPK_2038 0f85e307ff8050920902dae56d801a53 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 1.5E-58 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 YPK_2038 0f85e307ff8050920902dae56d801a53 196 PIRSF PIRSF015617 1 196 1.5E-67 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 YPK_2038 0f85e307ff8050920902dae56d801a53 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 24 196 4.3E-78 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 YPK_2038 0f85e307ff8050920902dae56d801a53 196 SUPERFAMILY SSF52540 7 196 2.66E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2038 0f85e307ff8050920902dae56d801a53 196 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 3 21 2.9E-6 T 12-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 YPK_2165 ab978e509b3480bebb13bdffe429d1ea 245 Pfam PF02811 PHP domain 5 80 9.9E-7 T 12-10-2018 IPR004013 PHP domain GO:0003824 YPK_2165 ab978e509b3480bebb13bdffe429d1ea 245 Gene3D G3DSA:3.20.20.140 1 245 7.8E-65 T 12-10-2018 YPK_2165 ab978e509b3480bebb13bdffe429d1ea 245 SMART SM00481 4 78 1.4E-15 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal YPK_2165 ab978e509b3480bebb13bdffe429d1ea 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 49.351 T 12-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 YPK_2165 ab978e509b3480bebb13bdffe429d1ea 245 SUPERFAMILY SSF89550 3 241 7.98E-62 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 YPK_2295 60eca111fd684612a77791bad7a6abb7 83 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 81 2.1E-20 T 12-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system YPK_2295 60eca111fd684612a77791bad7a6abb7 83 Gene3D G3DSA:3.10.450.530 1 83 3.5E-12 T 12-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily YPK_2591 3cf9314797eecb431ea54b99a886b7aa 1140 Pfam PF06761 Intracellular multiplication and human macrophage-killing 418 735 8.6E-71 T 12-10-2018 IPR009612 ImcF-related YPK_2591 3cf9314797eecb431ea54b99a886b7aa 1140 Pfam PF06744 Type VI secretion protein IcmF C-terminal 868 1066 4.6E-57 T 12-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal YPK_3142 8414b65c73a98b6cacc0fcb0c608fabe 231 Gene3D G3DSA:3.40.50.10140 77 229 5.0E-22 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily YPK_3142 8414b65c73a98b6cacc0fcb0c608fabe 231 SUPERFAMILY SSF52200 98 219 1.03E-16 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily YPK_3142 8414b65c73a98b6cacc0fcb0c608fabe 231 Pfam PF13676 TIR domain 101 205 1.6E-13 T 12-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 YPK_1080 cb62a665fc85c891a91b6474e47ddc41 198 SUPERFAMILY SSF53098 5 196 1.15E-68 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_1080 cb62a665fc85c891a91b6474e47ddc41 198 Gene3D G3DSA:3.30.420.10 1 197 2.8E-73 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_1080 cb62a665fc85c891a91b6474e47ddc41 198 Hamap MF_00052_B Ribonuclease HII [rnhB]. 12 191 39.181 T 12-10-2018 IPR022898 Ribonuclease HII GO:0004523 YPK_1080 cb62a665fc85c891a91b6474e47ddc41 198 Pfam PF01351 Ribonuclease HII 14 189 1.5E-38 T 12-10-2018 IPR024567 Ribonuclease HII/HIII domain YPK_1304 47c7bfeb13cca36f4f00f35af3b46100 159 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 157 1.1E-60 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_1304 47c7bfeb13cca36f4f00f35af3b46100 159 Gene3D G3DSA:2.30.110.20 2 159 2.2E-52 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_1304 47c7bfeb13cca36f4f00f35af3b46100 159 Pfam PF05638 Type VI secretion system effector, Hcp 28 143 7.2E-24 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_1304 47c7bfeb13cca36f4f00f35af3b46100 159 SUPERFAMILY SSF141452 5 158 1.02E-36 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 1.4E-74 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 Gene3D G3DSA:1.10.10.160 108 181 1.3E-99 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 666 0.0 T 12-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 Gene3D G3DSA:3.40.50.300 4 266 1.3E-99 T 12-10-2018 YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 SUPERFAMILY SSF52540 2 639 8.59E-161 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 1.3E-70 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 40.681 T 12-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 Gene3D G3DSA:1.10.486.10 377 544 2.2E-133 T 12-10-2018 YPK_4038 32aa5a57597bff4a78cc2b2d374ebe59 673 Gene3D G3DSA:3.40.50.300 274 632 2.2E-133 T 12-10-2018 YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 SUPERFAMILY SSF52540 7 228 1.71E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 Pfam PF00005 ABC transporter 28 167 5.4E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 SMART SM00382 34 268 3.3E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 SMART SM00382 356 537 2.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 SUPERFAMILY SSF52540 330 551 2.5E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 Pfam PF00005 ABC transporter 348 491 3.4E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 Gene3D G3DSA:3.40.50.300 325 557 5.8E-64 T 12-10-2018 YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 Gene3D G3DSA:3.40.50.300 2 241 2.1E-57 T 12-10-2018 YPK_2901 dcae1755ed9160ed693edfdbd9d2c2b4 580 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_4157 5c6a5ed872253485327ff3e0c5c0de1f 152 TIGRFAM TIGR00576 dut: dUTP diphosphatase 11 151 1.1E-49 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 YPK_4157 5c6a5ed872253485327ff3e0c5c0de1f 152 Gene3D G3DSA:2.70.40.10 1 151 5.5E-55 T 12-10-2018 IPR036157 dUTPase-like superfamily YPK_4157 5c6a5ed872253485327ff3e0c5c0de1f 152 SUPERFAMILY SSF51283 1 151 1.3E-56 T 12-10-2018 IPR036157 dUTPase-like superfamily YPK_4157 5c6a5ed872253485327ff3e0c5c0de1f 152 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 151 34.47 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 YPK_4157 5c6a5ed872253485327ff3e0c5c0de1f 152 Pfam PF00692 dUTPase 17 150 2.4E-43 T 12-10-2018 IPR029054 dUTPase-like YPK_1088 5f7091e68217f528b4814283a1022138 182 PIRSF PIRSF011484 1 180 2.4E-68 T 12-10-2018 IPR009822 YaeQ YPK_1088 5f7091e68217f528b4814283a1022138 182 Pfam PF07152 YaeQ protein 1 173 2.5E-74 T 12-10-2018 IPR009822 YaeQ YPK_1088 5f7091e68217f528b4814283a1022138 182 SMART SM01322 1 176 7.4E-117 T 12-10-2018 IPR009822 YaeQ YPK_1088 5f7091e68217f528b4814283a1022138 182 SUPERFAMILY SSF52980 2 178 2.68E-70 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YPK_1088 5f7091e68217f528b4814283a1022138 182 Gene3D G3DSA:3.10.640.10 1 181 2.2E-75 T 12-10-2018 IPR038590 YaeQ superfamily YPK_2773 815d744975f98026f6ff4a0ee643ef48 316 SUPERFAMILY SSF51735 101 284 2.15E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2773 815d744975f98026f6ff4a0ee643ef48 316 Gene3D G3DSA:3.40.50.720 26 309 1.7E-93 T 12-10-2018 YPK_2773 815d744975f98026f6ff4a0ee643ef48 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 284 9.3E-57 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 YPK_2773 815d744975f98026f6ff4a0ee643ef48 316 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_2773 815d744975f98026f6ff4a0ee643ef48 316 Gene3D G3DSA:3.40.50.720 99 285 1.7E-93 T 12-10-2018 YPK_2773 815d744975f98026f6ff4a0ee643ef48 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 26 311 1.8E-21 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 YPK_2773 815d744975f98026f6ff4a0ee643ef48 316 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site YPK_2773 815d744975f98026f6ff4a0ee643ef48 316 SUPERFAMILY SSF52283 3 132 4.16E-25 T 12-10-2018 YPK_1057 7c7f860f56c3d256c61f8b4c2a65ef67 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 164.901 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YPK_1057 7c7f860f56c3d256c61f8b4c2a65ef67 281 SUPERFAMILY SSF55620 185 266 6.52E-10 T 12-10-2018 YPK_1057 7c7f860f56c3d256c61f8b4c2a65ef67 281 Pfam PF14489 QueF-like protein 195 269 1.1E-27 T 12-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YPK_1057 7c7f860f56c3d256c61f8b4c2a65ef67 281 PIRSF PIRSF004750 6 281 1.2E-124 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YPK_1057 7c7f860f56c3d256c61f8b4c2a65ef67 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 8.4E-47 T 12-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YPK_1057 7c7f860f56c3d256c61f8b4c2a65ef67 281 TIGRFAM TIGR03138 QueF: queuine synthase 10 281 2.4E-126 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 YPK_1057 7c7f860f56c3d256c61f8b4c2a65ef67 281 Gene3D G3DSA:3.30.1130.10 144 281 2.9E-60 T 12-10-2018 YPK_1057 7c7f860f56c3d256c61f8b4c2a65ef67 281 Gene3D G3DSA:3.30.1130.10 21 139 9.7E-43 T 12-10-2018 YPK_3891 578c28c49bfbe5f51698b7dc481ba795 279 Gene3D G3DSA:3.40.50.1980 147 279 6.0E-54 T 12-10-2018 YPK_3891 578c28c49bfbe5f51698b7dc481ba795 279 Gene3D G3DSA:3.40.50.1980 25 146 2.0E-44 T 12-10-2018 YPK_3891 578c28c49bfbe5f51698b7dc481ba795 279 SUPERFAMILY SSF53807 26 274 3.1E-49 T 12-10-2018 YPK_3891 578c28c49bfbe5f51698b7dc481ba795 279 Pfam PF01497 Periplasmic binding protein 29 253 7.5E-32 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_1472 32742dd36474bed4c71e0b22c1c7bd35 341 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 23 321 5.0E-96 T 12-10-2018 IPR010732 Type VI secretion, TssG-like YPK_1472 32742dd36474bed4c71e0b22c1c7bd35 341 Pfam PF06996 Type VI secretion, TssG 23 320 1.6E-82 T 12-10-2018 IPR010732 Type VI secretion, TssG-like YPK_2735 aafa8f2eca90811cc339f20904de3cab 271 Pfam PF01569 PAP2 superfamily 136 259 2.5E-8 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase YPK_2735 aafa8f2eca90811cc339f20904de3cab 271 SUPERFAMILY SSF48317 47 260 5.23E-12 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily YPK_2735 aafa8f2eca90811cc339f20904de3cab 271 Gene3D G3DSA:1.20.144.10 178 271 2.2E-7 T 12-10-2018 YPK_0454 20d27a4004e1aec9ae59c5462d02143e 293 Gene3D G3DSA:3.40.50.150 101 293 4.4E-56 T 12-10-2018 YPK_0454 20d27a4004e1aec9ae59c5462d02143e 293 SUPERFAMILY SSF53335 43 287 2.79E-43 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0454 20d27a4004e1aec9ae59c5462d02143e 293 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 32.471 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 YPK_0454 20d27a4004e1aec9ae59c5462d02143e 293 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 2.3E-117 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 YPK_0454 20d27a4004e1aec9ae59c5462d02143e 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 292 4.3E-100 T 12-10-2018 YPK_0454 20d27a4004e1aec9ae59c5462d02143e 293 PIRSF PIRSF000401 1 293 8.8E-90 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 YPK_0365 290ea0be5623584736e0b8c2b5428fe4 435 ProSitePatterns PS00161 Isocitrate lyase signature. 194 199 - T 12-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 YPK_0365 290ea0be5623584736e0b8c2b5428fe4 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 256 1.6E-116 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YPK_0365 290ea0be5623584736e0b8c2b5428fe4 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 257 435 2.4E-89 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YPK_0365 290ea0be5623584736e0b8c2b5428fe4 435 Gene3D G3DSA:3.20.20.60 1 418 5.3E-190 T 12-10-2018 YPK_0365 290ea0be5623584736e0b8c2b5428fe4 435 Pfam PF00463 Isocitrate lyase family 258 435 5.1E-50 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YPK_0365 290ea0be5623584736e0b8c2b5428fe4 435 Pfam PF00463 Isocitrate lyase family 9 256 9.5E-63 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YPK_0365 290ea0be5623584736e0b8c2b5428fe4 435 SUPERFAMILY SSF51621 5 435 7.63E-156 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 YPK_0365 290ea0be5623584736e0b8c2b5428fe4 435 PIRSF PIRSF001362 1 435 9.8E-225 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 YPK_3145 6862e7065849ef2a9a606dd3426b45fd 640 SUPERFAMILY SSF52540 25 620 5.84E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3145 6862e7065849ef2a9a606dd3426b45fd 640 Gene3D G3DSA:3.40.50.300 189 286 6.8E-9 T 12-10-2018 YPK_3145 6862e7065849ef2a9a606dd3426b45fd 640 Gene3D G3DSA:3.40.50.300 21 164 5.4E-14 T 12-10-2018 YPK_3145 6862e7065849ef2a9a606dd3426b45fd 640 Pfam PF13245 AAA domain 42 274 6.5E-12 T 12-10-2018 YPK_3876 4b53b87bd8a6f1f5c7e1c9ad45a953be 394 PIRSF PIRSF037118 1 394 4.5E-180 T 12-10-2018 IPR017115 Tellurite resistance, TerA YPK_3876 4b53b87bd8a6f1f5c7e1c9ad45a953be 394 Pfam PF02342 TerD domain 25 159 2.4E-29 T 12-10-2018 IPR003325 TerD domain YPK_3876 4b53b87bd8a6f1f5c7e1c9ad45a953be 394 Gene3D G3DSA:2.60.60.30 15 158 3.5E-34 T 12-10-2018 YPK_2752 b6fe9c8225165a59c033ffa61780e270 503 Pfam PF00324 Amino acid permease 25 478 5.4E-143 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YPK_2752 b6fe9c8225165a59c033ffa61780e270 503 ProSitePatterns PS00218 Amino acid permeases signature. 50 81 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YPK_2752 b6fe9c8225165a59c033ffa61780e270 503 PIRSF PIRSF006060 3 495 1.5E-82 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2752 b6fe9c8225165a59c033ffa61780e270 503 Gene3D G3DSA:1.20.1740.10 16 485 2.3E-63 T 12-10-2018 YPK_0291 1810ac9ab15ee2565f51d440023e927c 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.1E-22 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0291 1810ac9ab15ee2565f51d440023e927c 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 12-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0291 1810ac9ab15ee2565f51d440023e927c 63 SUPERFAMILY SSF46561 1 61 1.57E-21 T 12-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0291 1810ac9ab15ee2565f51d440023e927c 63 Gene3D G3DSA:1.10.287.310 1 63 4.3E-30 T 12-10-2018 YPK_0291 1810ac9ab15ee2565f51d440023e927c 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.616 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0291 1810ac9ab15ee2565f51d440023e927c 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.9E-22 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_3596 d486521c122e5081bf84ad3070d63313 818 Gene3D G3DSA:3.40.630.30 661 818 3.4E-6 T 12-10-2018 YPK_3596 d486521c122e5081bf84ad3070d63313 818 SUPERFAMILY SSF49695 30 210 1.22E-15 T 12-10-2018 IPR011024 Gamma-crystallin-like YPK_3596 d486521c122e5081bf84ad3070d63313 818 SUPERFAMILY SSF55729 716 816 6.16E-7 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_3596 d486521c122e5081bf84ad3070d63313 818 Gene3D G3DSA:2.60.20.10 114 212 1.7E-22 T 12-10-2018 YPK_3596 d486521c122e5081bf84ad3070d63313 818 Gene3D G3DSA:2.60.20.10 12 113 9.6E-18 T 12-10-2018 YPK_1214 2d51b67e4ccc7625067dfad928746bf1 141 Pfam PF06530 Phage antitermination protein Q 2 125 1.7E-23 T 12-10-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 YPK_1214 2d51b67e4ccc7625067dfad928746bf1 141 SUPERFAMILY SSF88659 57 112 9.16E-5 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like YPK_1682 7f3eaee928b008b8c80fd81346c2a94d 55 Pfam PF01783 Ribosomal L32p protein family 2 54 1.1E-19 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1682 7f3eaee928b008b8c80fd81346c2a94d 55 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.225 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1682 7f3eaee928b008b8c80fd81346c2a94d 55 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 3.5E-20 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_1682 7f3eaee928b008b8c80fd81346c2a94d 55 SUPERFAMILY SSF57829 2 54 1.04E-18 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 YPK_0996 fd4a881e9bffed600f03888049eee35b 517 Pfam PF00884 Sulfatase 44 396 1.2E-54 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YPK_0996 fd4a881e9bffed600f03888049eee35b 517 Gene3D G3DSA:3.40.720.10 44 415 4.7E-101 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_0996 fd4a881e9bffed600f03888049eee35b 517 SUPERFAMILY SSF53649 42 505 7.98E-97 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_0996 fd4a881e9bffed600f03888049eee35b 517 Gene3D G3DSA:3.30.1120.10 424 511 3.0E-23 T 12-10-2018 YPK_3350 eca8bf2e7e73fceac54c04cdc5743cca 243 Gene3D G3DSA:3.60.140.10 1 243 2.7E-94 T 12-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily YPK_3350 eca8bf2e7e73fceac54c04cdc5743cca 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 241 2.5E-76 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase YPK_3350 eca8bf2e7e73fceac54c04cdc5743cca 243 SUPERFAMILY SSF64438 3 242 6.23E-87 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPK_3350 eca8bf2e7e73fceac54c04cdc5743cca 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 242 1.2E-67 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase YPK_3668 c30ae4228594c60f7a5c6b06ab53852b 269 Pfam PF00589 Phage integrase family 87 241 1.1E-17 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_3668 c30ae4228594c60f7a5c6b06ab53852b 269 Gene3D G3DSA:1.10.443.10 69 250 2.9E-14 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_3668 c30ae4228594c60f7a5c6b06ab53852b 269 SUPERFAMILY SSF56349 85 244 2.88E-27 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_1896 e715f5d9e9ca77ae5439b912fd45ffaa 119 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 7 119 3.9E-40 T 12-10-2018 IPR014320 Phage shock protein, PspC YPK_1896 e715f5d9e9ca77ae5439b912fd45ffaa 119 Pfam PF04024 PspC domain 8 64 8.0E-18 T 12-10-2018 IPR007168 Phage shock protein, PspC, N-terminal YPK_1952 b4dcb834adcccc168d2b02dcd3466fb5 679 Pfam PF10139 Putative bacterial virulence factor 3 304 5.1E-84 T 12-10-2018 IPR017030 Virulence effector, SrfC YPK_1952 b4dcb834adcccc168d2b02dcd3466fb5 679 Pfam PF10139 Putative bacterial virulence factor 318 671 7.5E-69 T 12-10-2018 IPR017030 Virulence effector, SrfC YPK_1952 b4dcb834adcccc168d2b02dcd3466fb5 679 PIRSF PIRSF034586 300 679 1.1E-146 T 12-10-2018 IPR017030 Virulence effector, SrfC YPK_1952 b4dcb834adcccc168d2b02dcd3466fb5 679 PIRSF PIRSF034586 1 303 4.4E-132 T 12-10-2018 IPR017030 Virulence effector, SrfC YPK_0801 3c82bed0b1ecd613688b5c35f2c7b714 228 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 14 218 1.7E-46 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU YPK_0801 3c82bed0b1ecd613688b5c35f2c7b714 228 Gene3D G3DSA:1.25.40.590 7 187 1.5E-47 T 12-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily YPK_0801 3c82bed0b1ecd613688b5c35f2c7b714 228 Pfam PF09850 Type VI secretion system protein DotU 14 215 1.7E-44 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU YPK_4013 25bc759c4be82c3ad383bf93f024736d 106 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 105 29.08 T 12-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_4013 25bc759c4be82c3ad383bf93f024736d 106 Pfam PF01491 Frataxin-like domain 1 102 3.1E-28 T 12-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_4013 25bc759c4be82c3ad383bf93f024736d 106 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 105 1.3E-42 T 12-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_4013 25bc759c4be82c3ad383bf93f024736d 106 Gene3D G3DSA:3.30.920.10 1 106 2.7E-41 T 12-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_4013 25bc759c4be82c3ad383bf93f024736d 106 ProSitePatterns PS01344 Frataxin family signature. 50 64 - T 12-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_4013 25bc759c4be82c3ad383bf93f024736d 106 SMART SM01219 1 106 2.2E-55 T 12-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 YPK_4013 25bc759c4be82c3ad383bf93f024736d 106 SUPERFAMILY SSF55387 1 105 2.96E-39 T 12-10-2018 YPK_2515 49ee359177507d520f74dbbcf36e61a7 369 Pfam PF07993 Male sterility protein 6 237 3.1E-33 T 12-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 YPK_2515 49ee359177507d520f74dbbcf36e61a7 369 Gene3D G3DSA:3.40.50.720 1 324 1.2E-46 T 12-10-2018 YPK_2515 49ee359177507d520f74dbbcf36e61a7 369 SUPERFAMILY SSF51735 2 353 2.72E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 Pfam PF01202 Shikimate kinase 11 168 6.6E-48 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 Hamap MF_01269 Shikimate kinase 2 [aroL]. 1 173 44.932 T 12-10-2018 IPR027544 Shikimate kinase 2 GO:0004765|GO:0009073 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 Gene3D G3DSA:3.40.50.300 1 170 2.0E-52 T 12-10-2018 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 SUPERFAMILY SSF52540 3 169 1.26E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 PRINTS PR01100 Shikimate kinase family signature 29 42 4.0E-22 T 12-10-2018 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 PRINTS PR01100 Shikimate kinase family signature 95 112 4.0E-22 T 12-10-2018 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 PRINTS PR01100 Shikimate kinase family signature 5 20 4.0E-22 T 12-10-2018 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 PRINTS PR01100 Shikimate kinase family signature 57 65 4.0E-22 T 12-10-2018 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 PRINTS PR01100 Shikimate kinase family signature 74 83 4.0E-22 T 12-10-2018 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 25.279 T 12-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_3282 412f2d574e51bd7944014b31b2c1e0d9 174 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 12-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_1201 0aaf50761da06b100c2e211c22f34680 45 Pfam PF03869 Arc-like DNA binding domain 9 42 1.0E-10 T 12-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 YPK_1201 0aaf50761da06b100c2e211c22f34680 45 SUPERFAMILY SSF47598 2 42 3.26E-10 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YPK_1201 0aaf50761da06b100c2e211c22f34680 45 Gene3D G3DSA:1.10.1220.10 1 45 1.1E-13 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YPK_0945 448c06e1a687f408d1e5836444653e1a 273 SUPERFAMILY SSF57783 28 94 9.35E-11 T 12-10-2018 YPK_0945 448c06e1a687f408d1e5836444653e1a 273 SMART SM00778 29 67 1.6E-19 T 12-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 YPK_0945 448c06e1a687f408d1e5836444653e1a 273 Pfam PF08273 Zinc-binding domain of primase-helicase 30 67 4.2E-18 T 12-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 YPK_0945 448c06e1a687f408d1e5836444653e1a 273 Pfam PF13362 Toprim domain 181 273 1.4E-9 T 12-10-2018 IPR006171 TOPRIM domain YPK_2357 72fd037fea58b3d2916bce6e7fbdfdbb 74 Pfam PF10769 Protein of unknown function (DUF2594) 1 74 8.3E-38 T 12-10-2018 YPK_2920 c903d51151d13a2fe98b9c39684e274f 81 SUPERFAMILY SSF54285 1 81 3.18E-22 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YPK_2920 c903d51151d13a2fe98b9c39684e274f 81 Pfam PF02597 ThiS family 4 81 5.6E-21 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 YPK_2920 c903d51151d13a2fe98b9c39684e274f 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 2.1E-24 T 12-10-2018 YPK_2920 c903d51151d13a2fe98b9c39684e274f 81 Gene3D G3DSA:3.10.20.30 1 81 1.3E-26 T 12-10-2018 IPR012675 Beta-grasp domain superfamily YPK_2456 0b7c62ec4dc46309f2dd2115bc672eb8 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 6.1E-134 T 12-10-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 YPK_2456 0b7c62ec4dc46309f2dd2115bc672eb8 267 SUPERFAMILY SSF56529 4 267 1.23E-75 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_2456 0b7c62ec4dc46309f2dd2115bc672eb8 267 Gene3D G3DSA:3.90.850.10 1 267 3.0E-79 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_3665 6326fb92ba711f3d346a974fa21a33a9 100 SUPERFAMILY SSF53335 4 92 2.91E-10 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3665 6326fb92ba711f3d346a974fa21a33a9 100 Pfam PF12161 HsdM N-terminal domain 6 90 6.2E-14 T 12-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain YPK_3665 6326fb92ba711f3d346a974fa21a33a9 100 Gene3D G3DSA:1.20.1260.30 1 98 1.0E-29 T 12-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily YPK_3182 01449c0cccf5695c74357fe33438884f 321 SUPERFAMILY SSF51735 1 318 2.32E-74 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3182 01449c0cccf5695c74357fe33438884f 321 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 3 314 48.945 T 12-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 YPK_3182 01449c0cccf5695c74357fe33438884f 321 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 233 2.7E-75 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_3182 01449c0cccf5695c74357fe33438884f 321 Gene3D G3DSA:3.90.25.10 168 312 4.5E-113 T 12-10-2018 YPK_3182 01449c0cccf5695c74357fe33438884f 321 Gene3D G3DSA:3.40.50.720 6 303 4.5E-113 T 12-10-2018 YPK_1397 61276c6abc5eb754ef58c2c31f494a6e 137 SUPERFAMILY SSF101756 40 135 1.96E-35 T 12-10-2018 IPR036700 Bacterial OB-fold superfamily YPK_1397 61276c6abc5eb754ef58c2c31f494a6e 137 Pfam PF04076 Bacterial OB fold (BOF) protein 31 135 2.0E-34 T 12-10-2018 IPR005220 Bacterial OB-fold YPK_1397 61276c6abc5eb754ef58c2c31f494a6e 137 Gene3D G3DSA:2.40.50.200 27 137 1.3E-42 T 12-10-2018 IPR036700 Bacterial OB-fold superfamily YPK_1397 61276c6abc5eb754ef58c2c31f494a6e 137 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 2 136 9.2E-40 T 12-10-2018 IPR016052 Bacteriophage 933W, L0136 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 SUPERFAMILY SSF51905 2 382 1.46E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 388 6.4E-133 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 Gene3D G3DSA:3.50.50.60 3 336 7.1E-98 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 388 2.2E-146 T 12-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 12-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 8.4E-15 T 12-10-2018 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 8.4E-15 T 12-10-2018 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.4E-15 T 12-10-2018 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 8.4E-15 T 12-10-2018 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 Gene3D G3DSA:3.30.9.50 78 267 7.1E-98 T 12-10-2018 YPK_0864 87b2afd925790230a349d4b3c470aaeb 392 Pfam PF01494 FAD binding domain 2 343 1.4E-22 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 YPK_0553 534bf4e1bb58f3da68ce478202a3335a 434 PIRSF PIRSF002808 1 427 1.9E-33 T 12-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 YPK_0553 534bf4e1bb58f3da68ce478202a3335a 434 Gene3D G3DSA:1.20.1250.20 215 420 3.6E-27 T 12-10-2018 YPK_0553 534bf4e1bb58f3da68ce478202a3335a 434 SUPERFAMILY SSF103473 4 414 2.35E-79 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0553 534bf4e1bb58f3da68ce478202a3335a 434 Pfam PF07690 Major Facilitator Superfamily 18 309 1.2E-46 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0553 534bf4e1bb58f3da68ce478202a3335a 434 Gene3D G3DSA:1.20.1250.20 1 199 7.8E-46 T 12-10-2018 YPK_3262 45db7264236315600a02c0f1964c2834 604 Pfam PF07549 SecD/SecF GG Motif 109 129 5.0E-6 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YPK_3262 45db7264236315600a02c0f1964c2834 604 Pfam PF13721 SecD export protein N-terminal TM region 1 92 3.4E-28 T 12-10-2018 IPR027398 SecD export protein N-terminal TM domain YPK_3262 45db7264236315600a02c0f1964c2834 604 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 334 583 3.9E-84 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YPK_3262 45db7264236315600a02c0f1964c2834 604 Pfam PF02355 Protein export membrane protein 422 590 6.4E-16 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YPK_3262 45db7264236315600a02c0f1964c2834 604 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 604 47.786 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 YPK_3262 45db7264236315600a02c0f1964c2834 604 Gene3D G3DSA:3.30.70.3400 211 426 1.7E-49 T 12-10-2018 YPK_3262 45db7264236315600a02c0f1964c2834 604 SUPERFAMILY SSF82866 399 595 1.24E-41 T 12-10-2018 YPK_3262 45db7264236315600a02c0f1964c2834 604 Gene3D G3DSA:3.30.1360.200 267 420 1.7E-49 T 12-10-2018 YPK_3262 45db7264236315600a02c0f1964c2834 604 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 112 590 2.0E-151 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 YPK_0461 d2e3807b2d845f4eafc88e5824f400b3 206 Pfam PF01794 Ferric reductase like transmembrane component 48 161 1.6E-16 T 12-10-2018 IPR013130 Ferric reductase transmembrane component-like domain YPK_0461 d2e3807b2d845f4eafc88e5824f400b3 206 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 5 204 21.654 T 12-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 YPK_1900 548c2bfa7e901a8d693f6db694760b29 152 Pfam PF08808 RES domain 2 147 8.5E-25 T 12-10-2018 IPR014914 RES domain YPK_1900 548c2bfa7e901a8d693f6db694760b29 152 SMART SM00953 15 140 5.7E-34 T 12-10-2018 IPR014914 RES domain YPK_0614 e6187a783dd290ba75d4de3aae466dca 476 Pfam PF00589 Phage integrase family 267 404 3.3E-10 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_0614 e6187a783dd290ba75d4de3aae466dca 476 Gene3D G3DSA:3.30.160.390 5 113 5.5E-8 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily YPK_0614 e6187a783dd290ba75d4de3aae466dca 476 Gene3D G3DSA:1.10.443.10 239 437 1.0E-22 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_0614 e6187a783dd290ba75d4de3aae466dca 476 Pfam PF13356 Arm DNA-binding domain 6 94 2.5E-12 T 12-10-2018 IPR025166 Integrase, DNA-binding domain YPK_0614 e6187a783dd290ba75d4de3aae466dca 476 SUPERFAMILY SSF56349 101 421 9.22E-34 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_2877 761d5de90e7010aa1ce130c591eb22d5 309 Gene3D G3DSA:3.40.190.10 117 243 6.9E-55 T 12-10-2018 YPK_2877 761d5de90e7010aa1ce130c591eb22d5 309 Gene3D G3DSA:3.40.190.10 31 272 6.9E-55 T 12-10-2018 YPK_2877 761d5de90e7010aa1ce130c591eb22d5 309 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 268 1.1E-84 T 12-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 YPK_2877 761d5de90e7010aa1ce130c591eb22d5 309 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 44 285 8.8E-48 T 12-10-2018 YPK_2877 761d5de90e7010aa1ce130c591eb22d5 309 SUPERFAMILY SSF53850 26 300 6.95E-45 T 12-10-2018 YPK_2877 761d5de90e7010aa1ce130c591eb22d5 309 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 305 1.0E-102 T 12-10-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 YPK_1305 4c560d586acbdcf02232864c58ef33c6 77 Pfam PF06836 Protein of unknown function (DUF1240) 1 77 5.1E-33 T 12-10-2018 IPR010665 Protein of unknown function DUF1240 YPK_3174 5161611a590c354cac48f4ea3bc88589 259 Pfam PF07690 Major Facilitator Superfamily 89 253 3.3E-13 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3174 5161611a590c354cac48f4ea3bc88589 259 SUPERFAMILY SSF103473 2 253 3.53E-32 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3174 5161611a590c354cac48f4ea3bc88589 259 Gene3D G3DSA:1.20.1250.20 1 255 8.4E-20 T 12-10-2018 YPK_1494 cca18648ea16ca6297e09b23f95a7e8a 180 Gene3D G3DSA:1.20.1440.20 15 180 4.9E-52 T 12-10-2018 IPR023353 LemA-like domain superfamily YPK_1494 cca18648ea16ca6297e09b23f95a7e8a 180 Pfam PF04011 LemA family 7 174 2.1E-56 T 12-10-2018 IPR007156 LemA YPK_1494 cca18648ea16ca6297e09b23f95a7e8a 180 SUPERFAMILY SSF140478 25 169 1.31E-46 T 12-10-2018 IPR023353 LemA-like domain superfamily YPK_1710 cff9295c587e684a529da09a94d0e189 304 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 304 69.028 T 12-10-2018 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 YPK_1710 cff9295c587e684a529da09a94d0e189 304 Gene3D G3DSA:3.30.420.40 4 297 8.4E-90 T 12-10-2018 YPK_1710 cff9295c587e684a529da09a94d0e189 304 ProSitePatterns PS01125 ROK family signature. 130 157 - T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_1710 cff9295c587e684a529da09a94d0e189 304 SUPERFAMILY SSF53067 1 301 5.56E-60 T 12-10-2018 YPK_1710 cff9295c587e684a529da09a94d0e189 304 Gene3D G3DSA:3.30.420.40 119 290 8.4E-90 T 12-10-2018 YPK_1710 cff9295c587e684a529da09a94d0e189 304 Pfam PF00480 ROK family 2 301 2.5E-70 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_3051 a23341430da1245ce054cb86d64b7ce6 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 10 75 1.2E-9 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YPK_3051 a23341430da1245ce054cb86d64b7ce6 284 SUPERFAMILY SSF53697 109 280 6.01E-27 T 12-10-2018 YPK_3051 a23341430da1245ce054cb86d64b7ce6 284 Gene3D G3DSA:3.40.50.10490 109 284 2.1E-33 T 12-10-2018 YPK_3051 a23341430da1245ce054cb86d64b7ce6 284 Gene3D G3DSA:1.10.10.10 5 83 7.4E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3051 a23341430da1245ce054cb86d64b7ce6 284 Pfam PF01380 SIS domain 140 266 5.5E-21 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_3051 a23341430da1245ce054cb86d64b7ce6 284 SUPERFAMILY SSF46689 9 85 4.84E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3019 01aaf7c8f5defc60f8b0ebfdc7931188 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 1.1E-37 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YPK_3019 01aaf7c8f5defc60f8b0ebfdc7931188 105 SUPERFAMILY SSF81301 4 105 8.66E-37 T 12-10-2018 YPK_3019 01aaf7c8f5defc60f8b0ebfdc7931188 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.333 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YPK_3019 01aaf7c8f5defc60f8b0ebfdc7931188 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 6.1E-28 T 12-10-2018 YPK_3019 01aaf7c8f5defc60f8b0ebfdc7931188 105 Gene3D G3DSA:3.30.460.10 2 105 1.2E-35 T 12-10-2018 YPK_1062 b989c9d2c8daa1939c9314eed8647913 129 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 3.7E-55 T 12-10-2018 IPR020911 Uncharacterised protein family UPF0325 YPK_1062 b989c9d2c8daa1939c9314eed8647913 129 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 2.0E-67 T 12-10-2018 IPR020911 Uncharacterised protein family UPF0325 YPK_1062 b989c9d2c8daa1939c9314eed8647913 129 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 32.444 T 12-10-2018 IPR020911 Uncharacterised protein family UPF0325 YPK_3290 87764000f0484f305f802da25e3cbb9c 415 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 1 414 7.4E-225 T 12-10-2018 IPR010520 UPF0255 family YPK_3290 87764000f0484f305f802da25e3cbb9c 415 Hamap MF_01063 Esterase FrsA [frsA]. 1 415 60.768 T 12-10-2018 IPR010520 UPF0255 family YPK_3290 87764000f0484f305f802da25e3cbb9c 415 SUPERFAMILY SSF53474 46 412 3.24E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3290 87764000f0484f305f802da25e3cbb9c 415 Gene3D G3DSA:3.40.50.1820 16 414 1.2E-110 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0767 c2cd0bbe857962053ede7ea5f1b3b6e8 137 Gene3D G3DSA:1.25.10.10 10 136 2.4E-11 T 12-10-2018 IPR011989 Armadillo-like helical YPK_0767 c2cd0bbe857962053ede7ea5f1b3b6e8 137 SUPERFAMILY SSF48371 38 131 1.24E-6 T 12-10-2018 IPR016024 Armadillo-type fold YPK_0546 2f1a6977d911fc016aa8da3b0fa16fe6 131 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 16 127 2.1E-20 T 12-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III YPK_0816 7c055fe05f174e0c86e8c26a3ca75e3e 366 Pfam PF01497 Periplasmic binding protein 75 308 1.8E-22 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_0816 7c055fe05f174e0c86e8c26a3ca75e3e 366 Gene3D G3DSA:3.40.50.1980 18 364 1.2E-89 T 12-10-2018 YPK_0816 7c055fe05f174e0c86e8c26a3ca75e3e 366 SUPERFAMILY SSF53807 19 334 8.63E-47 T 12-10-2018 YPK_1342 e11a7162a20d6d7943b3d6c320edebc8 62 Pfam PF11119 Protein of unknown function (DUF2633) 1 56 2.4E-32 T 12-10-2018 IPR022576 Protein of unknown function DUF2633 YPK_1342 e11a7162a20d6d7943b3d6c320edebc8 62 ProDom PD053432 MEMBRANE TRANSMEMBRANE YFGG INNER EXPORTED Y1396 PRECURSOR SIGNAL 2 49 1.0E-19 T 12-10-2018 IPR022576 Protein of unknown function DUF2633 YPK_1616 83da8910c41c8663e0c0d9c03e37e4d0 361 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 355 1.7E-81 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YPK_1616 83da8910c41c8663e0c0d9c03e37e4d0 361 Gene3D G3DSA:3.40.718.10 1 361 5.8E-143 T 12-10-2018 YPK_1616 83da8910c41c8663e0c0d9c03e37e4d0 361 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 2 358 1.7E-165 T 12-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 YPK_1616 83da8910c41c8663e0c0d9c03e37e4d0 361 SUPERFAMILY SSF53659 2 359 1.92E-112 T 12-10-2018 YPK_1616 83da8910c41c8663e0c0d9c03e37e4d0 361 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 YPK_1616 83da8910c41c8663e0c0d9c03e37e4d0 361 SMART SM01329 6 355 9.6E-168 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 YPK_3383 4a05d7cf0c8b7dcd334a309a99083b72 276 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 26 267 1.8E-36 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 YPK_3383 4a05d7cf0c8b7dcd334a309a99083b72 276 SUPERFAMILY SSF52518 3 273 1.59E-72 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_3383 4a05d7cf0c8b7dcd334a309a99083b72 276 Gene3D G3DSA:3.40.50.970 3 276 1.2E-83 T 12-10-2018 YPK_0186 19c13dc98490644c8847506d9b0cb9d6 114 SUPERFAMILY SSF160719 15 103 6.41E-5 T 12-10-2018 YPK_0186 19c13dc98490644c8847506d9b0cb9d6 114 Pfam PF07409 Phage protein GP46 37 106 2.9E-15 T 12-10-2018 IPR010877 Bacteriophage Mu, Gp46 YPK_2796 fc150d64c9d03e43e1e801f0fa9a4e3c 334 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 2.4E-98 T 12-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 YPK_2796 fc150d64c9d03e43e1e801f0fa9a4e3c 334 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 45.323 T 12-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 YPK_1750 1ba1922c11d3deede158863161808a4f 165 SMART SM00260 14 151 4.8E-43 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 YPK_1750 1ba1922c11d3deede158863161808a4f 165 Gene3D G3DSA:2.30.30.40 20 145 1.1E-39 T 12-10-2018 YPK_1750 1ba1922c11d3deede158863161808a4f 165 Gene3D G3DSA:2.40.50.180 37 146 1.1E-39 T 12-10-2018 YPK_1750 1ba1922c11d3deede158863161808a4f 165 SUPERFAMILY SSF50341 17 158 2.09E-39 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 YPK_1750 1ba1922c11d3deede158863161808a4f 165 Pfam PF01584 CheW-like domain 18 154 2.2E-37 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 YPK_2246 a9e90397974a9257eb25d05f5fde681a 237 Pfam PF00005 ABC transporter 33 178 2.2E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2246 a9e90397974a9257eb25d05f5fde681a 237 Gene3D G3DSA:3.40.50.300 15 237 3.3E-68 T 12-10-2018 YPK_2246 a9e90397974a9257eb25d05f5fde681a 237 SMART SM00382 42 226 3.6E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_2246 a9e90397974a9257eb25d05f5fde681a 237 SUPERFAMILY SSF52540 17 233 2.32E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2246 a9e90397974a9257eb25d05f5fde681a 237 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_2093 833d471f3cccaf11a7dd42123a7f6ef8 215 Gene3D G3DSA:3.40.50.850 1 210 1.1E-63 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 YPK_2093 833d471f3cccaf11a7dd42123a7f6ef8 215 SUPERFAMILY SSF52499 2 211 1.16E-53 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 YPK_2093 833d471f3cccaf11a7dd42123a7f6ef8 215 Pfam PF00857 Isochorismatase family 4 205 3.1E-36 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 YPK_4148 e6f77053ef1b4653bb800c7edd500469 321 Gene3D G3DSA:3.40.50.2000 1 163 2.2E-61 T 12-10-2018 YPK_4148 e6f77053ef1b4653bb800c7edd500469 321 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 3 319 2.1E-125 T 12-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 YPK_4148 e6f77053ef1b4653bb800c7edd500469 321 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 78 313 3.0E-71 T 12-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 YPK_4148 e6f77053ef1b4653bb800c7edd500469 321 Gene3D G3DSA:3.40.50.2000 164 320 1.4E-55 T 12-10-2018 YPK_4148 e6f77053ef1b4653bb800c7edd500469 321 SUPERFAMILY SSF53756 1 320 2.51E-74 T 12-10-2018 YPK_0054 33b37ecffa251502882d899c63fe7aff 328 SUPERFAMILY SSF49401 203 327 4.57E-11 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_0054 33b37ecffa251502882d899c63fe7aff 328 Pfam PF00419 Fimbrial protein 204 327 6.5E-10 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_0054 33b37ecffa251502882d899c63fe7aff 328 Gene3D G3DSA:2.60.40.1090 199 327 2.9E-6 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 Pfam PF07687 Peptidase dimerisation domain 175 282 2.0E-23 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 Gene3D G3DSA:3.30.70.360 179 292 7.5E-125 T 12-10-2018 YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 SUPERFAMILY SSF55031 179 286 3.44E-27 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 Gene3D G3DSA:3.40.630.10 8 360 7.5E-125 T 12-10-2018 YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 SUPERFAMILY SSF53187 5 373 2.16E-64 T 12-10-2018 YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 1.3E-176 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 52.284 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 61 70 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 YPK_1372 f766d7fe3fb9ab487da6cbea82d3a892 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 7.3E-44 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 YPK_3631 b2f139ff42ac7c93a95b24d039cba613 53 PIRSF PIRSF036466 1 53 3.1E-19 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 YPK_3631 b2f139ff42ac7c93a95b24d039cba613 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 53 18.845 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 YPK_3631 b2f139ff42ac7c93a95b24d039cba613 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 2.3E-13 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 YPK_1083 1d66b92fb90f5ffd35c987a7998a6f8c 132 Gene3D G3DSA:3.10.180.10 9 128 1.5E-31 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_1083 1d66b92fb90f5ffd35c987a7998a6f8c 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 126 5.1E-21 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain YPK_1083 1d66b92fb90f5ffd35c987a7998a6f8c 132 SUPERFAMILY SSF54593 4 129 1.17E-31 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase YPK_1870 aff7294f3830ceee4083058c226ed95f 334 Gene3D G3DSA:2.180.10.10 1 258 8.1E-66 T 12-10-2018 YPK_3768 15c00941dae8fa3fcbce1993fe6f1861 118 Gene3D G3DSA:3.10.490.10 1 117 1.0E-40 T 12-10-2018 YPK_3768 15c00941dae8fa3fcbce1993fe6f1861 118 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 3.6E-23 T 12-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like YPK_3768 15c00941dae8fa3fcbce1993fe6f1861 118 SUPERFAMILY SSF110857 1 112 1.31E-33 T 12-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily YPK_1148 4aac94c35a23ce4b9571e4cd6fa08497 253 SUPERFAMILY SSF88713 1 252 2.89E-77 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YPK_1148 4aac94c35a23ce4b9571e4cd6fa08497 253 Gene3D G3DSA:3.20.20.370 1 253 7.0E-69 T 12-10-2018 YPK_1148 4aac94c35a23ce4b9571e4cd6fa08497 253 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 3 250 41.618 T 12-10-2018 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 YPK_1148 4aac94c35a23ce4b9571e4cd6fa08497 253 Pfam PF04794 YdjC-like protein 5 241 1.3E-62 T 12-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like YPK_1585 19bf57210be563d9495782c578aca76c 102 Pfam PF05957 Bacterial protein of unknown function (DUF883) 10 102 1.6E-30 T 12-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 YPK_3512 9524122befea9527566113ed707dc081 307 Gene3D G3DSA:3.30.230.20 2 129 5.4E-52 T 12-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YPK_3512 9524122befea9527566113ed707dc081 307 SUPERFAMILY SSF54211 135 279 1.44E-54 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3512 9524122befea9527566113ed707dc081 307 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 3 281 46.027 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YPK_3512 9524122befea9527566113ed707dc081 307 SUPERFAMILY SSF54211 4 125 1.06E-41 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold YPK_3512 9524122befea9527566113ed707dc081 307 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3 302 5.4E-159 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YPK_3512 9524122befea9527566113ed707dc081 307 Gene3D G3DSA:3.30.1700.10 130 307 1.3E-75 T 12-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YPK_3512 9524122befea9527566113ed707dc081 307 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 5 277 1.9E-108 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 YPK_2982 c0fac093a306f107c0672fd50f00c830 87 Pfam PF01527 Transposase 2 70 3.0E-23 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YPK_2982 c0fac093a306f107c0672fd50f00c830 87 SUPERFAMILY SSF46689 1 72 2.33E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1773 a9e15fe3628862baa359e94cc437ecc4 329 Pfam PF05229 Spore Coat Protein U domain 37 171 7.3E-14 T 12-10-2018 IPR007893 Spore coat protein U YPK_1773 a9e15fe3628862baa359e94cc437ecc4 329 Pfam PF05229 Spore Coat Protein U domain 196 325 2.3E-25 T 12-10-2018 IPR007893 Spore coat protein U YPK_1773 a9e15fe3628862baa359e94cc437ecc4 329 SMART SM00972 271 326 3.5E-12 T 12-10-2018 IPR007893 Spore coat protein U YPK_1773 a9e15fe3628862baa359e94cc437ecc4 329 SMART SM00972 104 172 1.1E-11 T 12-10-2018 IPR007893 Spore coat protein U YPK_2732 4fb9b927e55646cc660570b6c2cda65a 104 Pfam PF07214 Protein of unknown function (DUF1418) 1 97 1.8E-42 T 12-10-2018 IPR010815 Protein of unknown function DUF1418 YPK_3270 22b94db71d3ae64d4b335b0c66be5d5d 226 SUPERFAMILY SSF51735 6 226 4.93E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3270 22b94db71d3ae64d4b335b0c66be5d5d 226 Pfam PF00106 short chain dehydrogenase 7 187 4.2E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3270 22b94db71d3ae64d4b335b0c66be5d5d 226 Gene3D G3DSA:3.40.50.720 2 226 1.2E-54 T 12-10-2018 YPK_3270 22b94db71d3ae64d4b335b0c66be5d5d 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.2E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3270 22b94db71d3ae64d4b335b0c66be5d5d 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.2E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3270 22b94db71d3ae64d4b335b0c66be5d5d 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.2E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3270 22b94db71d3ae64d4b335b0c66be5d5d 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 3.2E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3719 5412233e8484fce2e205834b784c3e56 353 Gene3D G3DSA:1.10.287.470 58 131 1.2E-100 T 12-10-2018 YPK_3719 5412233e8484fce2e205834b784c3e56 353 Gene3D G3DSA:2.40.50.100 23 167 1.2E-100 T 12-10-2018 YPK_3719 5412233e8484fce2e205834b784c3e56 353 Gene3D G3DSA:2.40.420.20 261 330 1.2E-100 T 12-10-2018 YPK_3719 5412233e8484fce2e205834b784c3e56 353 SUPERFAMILY SSF111369 11 257 4.45E-79 T 12-10-2018 YPK_3719 5412233e8484fce2e205834b784c3e56 353 Gene3D G3DSA:2.40.30.170 9 260 1.2E-100 T 12-10-2018 YPK_3719 5412233e8484fce2e205834b784c3e56 353 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 1 332 3.4E-81 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_3719 5412233e8484fce2e205834b784c3e56 353 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 24 250 3.8E-14 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPK_0548 fc9b2680001628c9c3ad61856e0d4b52 126 Pfam PF06476 Protein of unknown function (DUF1090) 13 120 3.4E-38 T 12-10-2018 IPR009468 Protein of unknown function DUF1090 YPK_3702 8ef2931f73406a28ae6ab701bad50232 250 Gene3D G3DSA:3.60.15.10 1 249 1.8E-68 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_3702 8ef2931f73406a28ae6ab701bad50232 250 SMART SM00849 37 223 4.7E-4 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_3702 8ef2931f73406a28ae6ab701bad50232 250 Pfam PF12706 Beta-lactamase superfamily domain 50 220 1.2E-16 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_3702 8ef2931f73406a28ae6ab701bad50232 250 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 247 9.6E-130 T 12-10-2018 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55|MetaCyc: PWY-7805|MetaCyc: PWY-7807 YPK_3702 8ef2931f73406a28ae6ab701bad50232 250 SUPERFAMILY SSF56281 1 249 8.53E-38 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2819 1f7d8ca24956cf59361a43b0a0ceeff5 502 PIRSF PIRSF007349 1 498 1.0E-156 T 12-10-2018 IPR007067 Tail sheath protein YPK_2819 1f7d8ca24956cf59361a43b0a0ceeff5 502 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 212 375 2.0E-20 T 12-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain YPK_2819 1f7d8ca24956cf59361a43b0a0ceeff5 502 Pfam PF17482 Phage tail sheath C-terminal domain 384 496 1.4E-8 T 12-10-2018 IPR020287 Tail sheath protein, C-terminal domain YPK_4146 90e898e94f58533fe189d8cc7a6d9aef 310 SUPERFAMILY SSF51735 1 306 4.79E-65 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_4146 90e898e94f58533fe189d8cc7a6d9aef 310 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 309 49.153 T 12-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 YPK_4146 90e898e94f58533fe189d8cc7a6d9aef 310 Gene3D G3DSA:3.40.50.720 3 302 1.2E-120 T 12-10-2018 YPK_4146 90e898e94f58533fe189d8cc7a6d9aef 310 Gene3D G3DSA:3.90.25.10 168 290 1.2E-120 T 12-10-2018 YPK_4146 90e898e94f58533fe189d8cc7a6d9aef 310 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 308 7.3E-136 T 12-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 YPK_4146 90e898e94f58533fe189d8cc7a6d9aef 310 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 236 9.3E-47 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_1838 3c0656ff598bf8eae2309f5fcdd0f397 154 SUPERFAMILY SSF54001 34 154 4.17E-38 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YPK_1838 3c0656ff598bf8eae2309f5fcdd0f397 154 Pfam PF00877 NlpC/P60 family 47 153 1.4E-27 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain YPK_1838 3c0656ff598bf8eae2309f5fcdd0f397 154 Gene3D G3DSA:3.90.1720.10 32 154 5.7E-38 T 12-10-2018 YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 SUPERFAMILY SSF55920 175 433 1.03E-85 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 126 2.9E-35 T 12-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 PRINTS PR00599 Methionine aminopeptidase-1 signature 253 269 1.6E-5 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 PRINTS PR00599 Methionine aminopeptidase-1 signature 371 383 1.6E-5 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 SMART SM01011 1 136 1.2E-56 T 12-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 Gene3D G3DSA:3.40.350.10 1 171 6.9E-65 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 Gene3D G3DSA:3.90.230.10 172 437 2.5E-104 T 12-10-2018 YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 Pfam PF00557 Metallopeptidase family M24 182 412 5.5E-64 T 12-10-2018 IPR000994 Peptidase M24 YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 SUPERFAMILY SSF53092 1 174 2.56E-52 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_0863 4d1e08f7fe9680566748d24259b5b356 437 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 348 360 - T 12-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YPK_0490 ccea71181273b71288603d57e04d67b4 446 SUPERFAMILY SSF111283 13 446 1.44E-128 T 12-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 YPK_0490 ccea71181273b71288603d57e04d67b4 446 Gene3D G3DSA:3.30.2290.10 7 232 5.2E-94 T 12-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPK_0490 ccea71181273b71288603d57e04d67b4 446 Pfam PF01523 Putative modulator of DNA gyrase 32 323 3.2E-59 T 12-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 YPK_3106 b6e70553bacb6b58645f3d5a7f32ed98 78 Pfam PF10965 Protein of unknown function (DUF2767) 7 65 2.6E-9 T 12-10-2018 IPR024493 Fumarase D KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 YPK_2244 f79c52c5ed3b829824b9c922005a32a0 104 Gene3D G3DSA:1.10.760.10 12 103 2.9E-12 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YPK_2244 f79c52c5ed3b829824b9c922005a32a0 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 19 93 5.5E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 YPK_2244 f79c52c5ed3b829824b9c922005a32a0 104 SUPERFAMILY SSF46626 3 99 1.4E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 YPK_3055 5ea3e45bd0811a8b5c935e0de8ef0b47 81 SUPERFAMILY SSF47413 3 70 1.74E-28 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_3055 5ea3e45bd0811a8b5c935e0de8ef0b47 81 Gene3D G3DSA:1.10.260.40 1 69 3.3E-32 T 12-10-2018 YPK_3055 5ea3e45bd0811a8b5c935e0de8ef0b47 81 Pfam PF13693 Winged helix-turn-helix DNA-binding 5 75 1.9E-33 T 12-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPK_3778 ba9705fcd711cae4966a3f909d1e0f39 206 Gene3D G3DSA:3.10.50.40 68 206 1.7E-49 T 12-10-2018 YPK_3778 ba9705fcd711cae4966a3f909d1e0f39 206 Gene3D G3DSA:1.10.287.460 5 67 7.8E-18 T 12-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 YPK_3778 ba9705fcd711cae4966a3f909d1e0f39 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 203 1.3E-26 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain YPK_3778 ba9705fcd711cae4966a3f909d1e0f39 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 3 108 1.1E-22 T 12-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 YPK_3778 ba9705fcd711cae4966a3f909d1e0f39 206 SUPERFAMILY SSF54534 8 205 2.81E-54 T 12-10-2018 YPK_2378 8cb6b696444ffe532ff471843371f91a 169 TIGRFAM TIGR03823 FliZ: flagellar regulatory protein FliZ 1 168 1.6E-92 T 12-10-2018 IPR022523 Flagellar regulator, FliZ YPK_2378 8cb6b696444ffe532ff471843371f91a 169 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 92 167 4.9E-7 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 YPK_1575 11d2ff9450d6074815c5cad73c088fe5 178 Gene3D G3DSA:3.40.50.300 2 168 6.9E-65 T 12-10-2018 YPK_1575 11d2ff9450d6074815c5cad73c088fe5 178 SUPERFAMILY SSF52540 2 166 2.91E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1575 11d2ff9450d6074815c5cad73c088fe5 178 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 165 8.0E-65 T 12-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 YPK_1575 11d2ff9450d6074815c5cad73c088fe5 178 Pfam PF01202 Shikimate kinase 12 166 6.7E-11 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 YPK_1122 02dc4ab532178ac7921e11f7c1eef281 149 ProDom PD093913 YICN MEMBRANE INNER EXPORTED 1 149 1.0E-76 T 12-10-2018 IPR009587 Protein of unknown function DUF1198 YPK_1122 02dc4ab532178ac7921e11f7c1eef281 149 Pfam PF06711 Protein of unknown function (DUF1198) 1 143 4.8E-65 T 12-10-2018 IPR009587 Protein of unknown function DUF1198 YPK_1371 8e852d8205511c02c361c5cd679e614e 225 Gene3D G3DSA:3.30.1380.10 3 196 1.8E-33 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_1371 8e852d8205511c02c361c5cd679e614e 225 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 26 181 8.2E-38 T 12-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 YPK_1371 8e852d8205511c02c361c5cd679e614e 225 SUPERFAMILY SSF55166 21 182 1.37E-20 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_4158 a474a8c6dc171e169fb3a3c4dfd50011 198 SUPERFAMILY SSF48498 86 176 2.36E-5 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily YPK_4158 a474a8c6dc171e169fb3a3c4dfd50011 198 SUPERFAMILY SSF46689 10 73 9.48E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_4158 a474a8c6dc171e169fb3a3c4dfd50011 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site YPK_4158 a474a8c6dc171e169fb3a3c4dfd50011 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 40.71 T 12-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 YPK_4158 a474a8c6dc171e169fb3a3c4dfd50011 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 61 2.1E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_4158 a474a8c6dc171e169fb3a3c4dfd50011 198 Gene3D G3DSA:1.10.357.10 9 198 6.7E-73 T 12-10-2018 YPK_1927 b3c2a8a961abc48fa6c59a3bad968f1f 107 SUPERFAMILY SSF47413 29 102 2.28E-14 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_1927 b3c2a8a961abc48fa6c59a3bad968f1f 107 Gene3D G3DSA:1.10.260.40 21 99 5.3E-16 T 12-10-2018 YPK_1927 b3c2a8a961abc48fa6c59a3bad968f1f 107 Pfam PF01381 Helix-turn-helix 42 93 6.2E-15 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_1927 b3c2a8a961abc48fa6c59a3bad968f1f 107 SMART SM00530 41 96 2.9E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_2023 202c4fc0f1517cfe529368cb70281105 108 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 8 108 1.2E-38 T 12-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 YPK_2023 202c4fc0f1517cfe529368cb70281105 108 Pfam PF01253 Translation initiation factor SUI1 32 101 1.7E-19 T 12-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 YPK_2023 202c4fc0f1517cfe529368cb70281105 108 PIRSF PIRSF037511 1 108 1.0E-35 T 12-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 YPK_2023 202c4fc0f1517cfe529368cb70281105 108 SUPERFAMILY SSF55159 5 104 6.02E-27 T 12-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 YPK_2023 202c4fc0f1517cfe529368cb70281105 108 Gene3D G3DSA:3.30.780.10 28 108 3.9E-33 T 12-10-2018 YPK_0472 7d7d5f61f71fa036d3efe4b203f9a402 481 Gene3D G3DSA:3.30.2290.10 11 240 1.3E-18 T 12-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal YPK_0472 7d7d5f61f71fa036d3efe4b203f9a402 481 PIRSF PIRSF004919 14 481 1.0E-146 T 12-10-2018 IPR025502 TldD YPK_0472 7d7d5f61f71fa036d3efe4b203f9a402 481 SUPERFAMILY SSF111283 23 480 6.67E-131 T 12-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 YPK_0472 7d7d5f61f71fa036d3efe4b203f9a402 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 7.0E-68 T 12-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 YPK_1917 624f8099109caab3808a571829ff4c92 150 Gene3D G3DSA:2.40.128.270 45 145 7.0E-33 T 12-10-2018 IPR038670 HslJ-like superfamily YPK_1917 624f8099109caab3808a571829ff4c92 150 Pfam PF03724 META domain 40 140 7.3E-19 T 12-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ YPK_3907 20b136d432aadb6d0180971cbd17296b 682 Gene3D G3DSA:1.10.490.80 577 671 5.8E-25 T 12-10-2018 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 Pfam PF00771 FHIPEP family 29 663 1.1E-217 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 PIRSF PIRSF005419 1 676 6.2E-226 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 16 671 1.3E-269 T 12-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 72 91 8.1E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 153 171 8.1E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 134 150 8.1E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 183 200 8.1E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 35 48 8.1E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 234 248 8.1E-55 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 Gene3D G3DSA:1.10.8.540 487 575 3.3E-31 T 12-10-2018 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 Gene3D G3DSA:3.40.30.60 356 486 5.9E-10 T 12-10-2018 YPK_3907 20b136d432aadb6d0180971cbd17296b 682 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 139 162 - T 12-10-2018 IPR025505 FHIPEP conserved site YPK_2972 83d9049de0a350535a62e1a4492ec766 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 4.5E-29 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2972 83d9049de0a350535a62e1a4492ec766 129 SUPERFAMILY SSF81343 3 129 3.05E-34 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2972 83d9049de0a350535a62e1a4492ec766 129 Gene3D G3DSA:1.20.1300.10 1 129 1.1E-46 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2972 83d9049de0a350535a62e1a4492ec766 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 126 4.2E-39 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2972 83d9049de0a350535a62e1a4492ec766 129 PIRSF PIRSF000178 2 129 8.6E-32 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2972 83d9049de0a350535a62e1a4492ec766 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 12-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_2972 83d9049de0a350535a62e1a4492ec766 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 12-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 YPK_1505 d2e52256087bdf789a86516fe165474c 254 Pfam PF04333 MlaA lipoprotein 31 224 1.0E-65 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YPK_1505 d2e52256087bdf789a86516fe165474c 254 PRINTS PR01805 VacJ lipoprotein signature 32 45 9.7E-33 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YPK_1505 d2e52256087bdf789a86516fe165474c 254 PRINTS PR01805 VacJ lipoprotein signature 101 118 9.7E-33 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YPK_1505 d2e52256087bdf789a86516fe165474c 254 PRINTS PR01805 VacJ lipoprotein signature 140 157 9.7E-33 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YPK_1505 d2e52256087bdf789a86516fe165474c 254 PRINTS PR01805 VacJ lipoprotein signature 50 66 9.7E-33 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 YPK_1023 8816b20ca93659bc8e512e5591a56743 313 Pfam PF03466 LysR substrate binding domain 93 297 1.1E-36 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_1023 8816b20ca93659bc8e512e5591a56743 313 Gene3D G3DSA:1.10.10.10 4 95 6.8E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1023 8816b20ca93659bc8e512e5591a56743 313 SUPERFAMILY SSF46785 3 84 1.36E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_1023 8816b20ca93659bc8e512e5591a56743 313 Gene3D G3DSA:3.40.190.290 96 304 5.3E-35 T 12-10-2018 YPK_1023 8816b20ca93659bc8e512e5591a56743 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 4.2E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_1023 8816b20ca93659bc8e512e5591a56743 313 SUPERFAMILY SSF53850 95 298 6.21E-38 T 12-10-2018 YPK_2142 91ffbb1db21c6b03b93e2eeb5ab0450a 261 Pfam PF00950 ABC 3 transport family 1 255 1.6E-84 T 12-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 YPK_2142 91ffbb1db21c6b03b93e2eeb5ab0450a 261 Gene3D G3DSA:1.10.3470.10 31 260 1.8E-10 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2142 91ffbb1db21c6b03b93e2eeb5ab0450a 261 SUPERFAMILY SSF81345 3 255 1.05E-41 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_1955 37c6ecfd55b1b0db17156973f1bebe16 496 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 14 496 3.0E-221 T 12-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 YPK_1955 37c6ecfd55b1b0db17156973f1bebe16 496 Gene3D G3DSA:3.30.1730.10 4 170 7.1E-58 T 12-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 YPK_1955 37c6ecfd55b1b0db17156973f1bebe16 496 Gene3D G3DSA:3.40.50.1580 185 496 3.8E-113 T 12-10-2018 YPK_1955 37c6ecfd55b1b0db17156973f1bebe16 496 SUPERFAMILY SSF53167 12 496 6.91E-152 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 YPK_1955 37c6ecfd55b1b0db17156973f1bebe16 496 Pfam PF01048 Phosphorylase superfamily 280 443 6.3E-18 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 YPK_1955 37c6ecfd55b1b0db17156973f1bebe16 496 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 14 165 1.2E-49 T 12-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 YPK_1955 37c6ecfd55b1b0db17156973f1bebe16 496 Hamap MF_01932 AMP nucleosidase [amn]. 5 496 57.594 T 12-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 YPK_3539 354d329585dcc7c6d70d95fd2b98f69e 393 TIGRFAM TIGR00899 2A0120: sugar efflux transporter 17 391 4.0E-159 T 12-10-2018 IPR004750 Sugar efflux GO:0005351|GO:0008643|GO:0016021 YPK_3539 354d329585dcc7c6d70d95fd2b98f69e 393 Pfam PF07690 Major Facilitator Superfamily 19 346 8.8E-32 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3539 354d329585dcc7c6d70d95fd2b98f69e 393 Gene3D G3DSA:1.20.1250.20 11 200 6.6E-21 T 12-10-2018 YPK_3539 354d329585dcc7c6d70d95fd2b98f69e 393 SUPERFAMILY SSF103473 10 390 3.4E-48 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3539 354d329585dcc7c6d70d95fd2b98f69e 393 Gene3D G3DSA:1.20.1250.20 208 392 9.5E-19 T 12-10-2018 YPK_2958 9c836096e8015734fed22a593e746e5c 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 2.2E-24 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 YPK_2958 9c836096e8015734fed22a593e746e5c 142 Gene3D G3DSA:3.30.420.270 60 133 3.2E-24 T 12-10-2018 YPK_2958 9c836096e8015734fed22a593e746e5c 142 TIGRFAM TIGR02801 tolR: protein TolR 13 140 8.1E-38 T 12-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 YPK_2958 9c836096e8015734fed22a593e746e5c 142 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 6 140 27.823 T 12-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 YPK_0806 20474904f7ba5d406dedd3389868a77a 765 SUPERFAMILY SSF53955 504 657 1.35E-9 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_0806 20474904f7ba5d406dedd3389868a77a 765 Pfam PF01551 Peptidase family M23 42 155 4.2E-6 T 12-10-2018 IPR016047 Peptidase M23 YPK_0806 20474904f7ba5d406dedd3389868a77a 765 Gene3D G3DSA:2.70.70.10 22 164 6.4E-13 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_0806 20474904f7ba5d406dedd3389868a77a 765 SUPERFAMILY SSF51261 31 158 1.2E-6 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_1090 71038f70e3f6eb4af97bdef0935ff4dd 227 Pfam PF04170 NlpE N-terminal domain 38 122 6.6E-26 T 12-10-2018 IPR007298 Copper resistance lipoprotein NlpE YPK_1090 71038f70e3f6eb4af97bdef0935ff4dd 227 Gene3D G3DSA:2.40.128.300 19 111 2.0E-29 T 12-10-2018 YPK_1090 71038f70e3f6eb4af97bdef0935ff4dd 227 Pfam PF17185 NlpE C-terminal OB domain 137 225 7.1E-37 T 12-10-2018 IPR033450 NlpE, C-terminal OB domain YPK_1090 71038f70e3f6eb4af97bdef0935ff4dd 227 Gene3D G3DSA:2.40.50.540 138 227 9.4E-31 T 12-10-2018 IPR038139 NlpE, C-terminal domain superfamily YPK_2778 2c4effdd0345f936adb3b536d21125b4 397 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 397 225.455 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 YPK_2778 2c4effdd0345f936adb3b536d21125b4 397 SUPERFAMILY SSF51658 1 383 2.02E-78 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily YPK_2778 2c4effdd0345f936adb3b536d21125b4 397 Gene3D G3DSA:3.20.20.150 1 391 1.0E-144 T 12-10-2018 YPK_2778 2c4effdd0345f936adb3b536d21125b4 397 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 392 2.3E-211 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 YPK_2778 2c4effdd0345f936adb3b536d21125b4 397 PIRSF PIRSF016049 1 392 8.4E-178 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 YPK_2778 2c4effdd0345f936adb3b536d21125b4 397 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 1.3E-155 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 YPK_1924 53a5da3e930347aa81dd6d80e69d9368 201 Gene3D G3DSA:3.40.50.360 1 201 3.8E-67 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_1924 53a5da3e930347aa81dd6d80e69d9368 201 Pfam PF02525 Flavodoxin-like fold 3 195 2.6E-47 T 12-10-2018 IPR003680 Flavodoxin-like fold YPK_1924 53a5da3e930347aa81dd6d80e69d9368 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 33.026 T 12-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 YPK_1924 53a5da3e930347aa81dd6d80e69d9368 201 SUPERFAMILY SSF52218 1 199 1.36E-58 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_2472 0dd6dcccb63e9e0d79dc4f6dae3c13a4 279 Pfam PF13847 Methyltransferase domain 86 199 3.3E-11 T 12-10-2018 IPR025714 Methyltransferase domain YPK_2472 0dd6dcccb63e9e0d79dc4f6dae3c13a4 279 PIRSF PIRSF018249 1 271 4.6E-84 T 12-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 YPK_2472 0dd6dcccb63e9e0d79dc4f6dae3c13a4 279 Gene3D G3DSA:3.40.50.150 1 272 9.4E-79 T 12-10-2018 YPK_2472 0dd6dcccb63e9e0d79dc4f6dae3c13a4 279 SUPERFAMILY SSF53335 4 242 3.29E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3715 c869f32e94e2333fe4129edb7b712a59 331 Pfam PF01136 Peptidase family U32 76 330 9.2E-66 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YPK_3715 c869f32e94e2333fe4129edb7b712a59 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YPK_3715 c869f32e94e2333fe4129edb7b712a59 331 SUPERFAMILY SSF51391 11 160 3.66E-5 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 YPK_3984 89ac6633759986a9c5b769701740ec8e 208 Pfam PF07947 YhhN family 26 206 4.2E-44 T 12-10-2018 IPR012506 YhhN-like GO:0016021 YPK_4011 c27ec898f19ac287e2e6d136a147136c 274 Gene3D G3DSA:3.10.310.10 3 270 2.0E-106 T 12-10-2018 YPK_4011 c27ec898f19ac287e2e6d136a147136c 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 4.2E-102 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YPK_4011 c27ec898f19ac287e2e6d136a147136c 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 38.968 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YPK_4011 c27ec898f19ac287e2e6d136a147136c 274 Pfam PF01678 Diaminopimelate epimerase 3 122 6.0E-34 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YPK_4011 c27ec898f19ac287e2e6d136a147136c 274 Pfam PF01678 Diaminopimelate epimerase 152 267 2.3E-31 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YPK_4011 c27ec898f19ac287e2e6d136a147136c 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 12-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 YPK_4011 c27ec898f19ac287e2e6d136a147136c 274 Gene3D G3DSA:3.10.310.10 115 261 2.0E-106 T 12-10-2018 YPK_4011 c27ec898f19ac287e2e6d136a147136c 274 SUPERFAMILY SSF54506 2 273 1.68E-53 T 12-10-2018 YPK_2871 0e08d5d468a7ff9f514ec66b19eed55a 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 340 8.6E-41 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_2871 0e08d5d468a7ff9f514ec66b19eed55a 358 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 42 351 5.9E-130 T 12-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC YPK_2095 26f5f9ffbe4b1469d9bd60c83f07df27 137 SUPERFAMILY SSF51316 6 133 8.89E-58 T 12-10-2018 IPR011057 Mss4-like superfamily YPK_2095 26f5f9ffbe4b1469d9bd60c83f07df27 137 Gene3D G3DSA:2.170.150.20 4 136 1.1E-59 T 12-10-2018 YPK_2095 26f5f9ffbe4b1469d9bd60c83f07df27 137 Pfam PF01641 SelR domain 12 127 3.0E-52 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 YPK_2095 26f5f9ffbe4b1469d9bd60c83f07df27 137 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 3 129 37.073 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 YPK_2095 26f5f9ffbe4b1469d9bd60c83f07df27 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 8 135 5.5E-60 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 YPK_0238 d42293fbb37b93fc37b428b19f5dcd96 394 SUPERFAMILY SSF103473 4 389 1.57E-38 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0238 d42293fbb37b93fc37b428b19f5dcd96 394 Gene3D G3DSA:1.20.1250.20 2 188 9.2E-16 T 12-10-2018 YPK_0238 d42293fbb37b93fc37b428b19f5dcd96 394 Gene3D G3DSA:1.20.1250.20 206 388 2.6E-20 T 12-10-2018 YPK_0238 d42293fbb37b93fc37b428b19f5dcd96 394 Pfam PF07690 Major Facilitator Superfamily 15 321 2.7E-21 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0238 d42293fbb37b93fc37b428b19f5dcd96 394 Hamap MF_01044 Protein TsgA [tsgA]. 1 390 28.778 T 12-10-2018 IPR023528 Major facilitator superfamily transporter, TsgA YPK_2853 4658a91337d16035c95082e0abcfe62c 402 Pfam PF03222 Tryptophan/tyrosine permease family 3 389 4.5E-134 T 12-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 7 383 3.3E-136 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 Gene3D G3DSA:1.20.1740.10 2 400 2.0E-5 T 12-10-2018 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 17 33 - T 12-10-2018 IPR013061 Tryptophan/tryrosine permease, conserved site YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 148 168 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 221 240 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 37 56 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 316 334 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 82 102 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 282 301 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 337 356 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 10 33 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_2853 4658a91337d16035c95082e0abcfe62c 402 PRINTS PR00166 Aromatic amino acid permease signature 182 204 5.4E-90 T 12-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 YPK_3121 790a93632bc034ec848736cd27b411a3 124 Pfam PF10618 Phage tail tube protein 6 119 4.9E-41 T 12-10-2018 IPR019596 Bacteriophage Mu, GpM, tail tube YPK_1735 20940f7e851da2940206dbd176f66a2f 177 Pfam PF10777 Inner membrane protein YlaC 1 153 2.3E-72 T 12-10-2018 IPR019713 Inner membrane protein YlaC YPK_1143 3d43688ce27c4d65ec8c7025a938ab33 126 TIGRFAM TIGR00494 crcB: protein CrcB 7 125 2.4E-23 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YPK_1143 3d43688ce27c4d65ec8c7025a938ab33 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 121 2.4E-20 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YPK_1143 3d43688ce27c4d65ec8c7025a938ab33 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 126 18.538 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 YPK_1445 76ee7d14e0aaba597f2c7960ae9d92ec 415 Pfam PF07350 Protein of unknown function (DUF1479) 8 412 2.2E-147 T 12-10-2018 IPR010856 Protein of unknown function DUF1479 YPK_1445 76ee7d14e0aaba597f2c7960ae9d92ec 415 SUPERFAMILY SSF51197 3 413 2.84E-153 T 12-10-2018 YPK_1445 76ee7d14e0aaba597f2c7960ae9d92ec 415 Gene3D G3DSA:2.60.120.330 1 415 7.9E-169 T 12-10-2018 IPR027443 Isopenicillin N synthase-like YPK_1050 a640d8b47beb1e44b5d46b52a16a8c86 401 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 401 8.0E-238 T 12-10-2018 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 YPK_1050 a640d8b47beb1e44b5d46b52a16a8c86 401 SUPERFAMILY SSF53383 8 397 9.31E-108 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1050 a640d8b47beb1e44b5d46b52a16a8c86 401 Gene3D G3DSA:3.40.640.10 34 292 2.0E-145 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_1050 a640d8b47beb1e44b5d46b52a16a8c86 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 213 232 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site YPK_1050 a640d8b47beb1e44b5d46b52a16a8c86 401 Pfam PF00266 Aminotransferase class-V 22 388 2.8E-137 T 12-10-2018 IPR000192 Aminotransferase class V domain YPK_1050 a640d8b47beb1e44b5d46b52a16a8c86 401 Gene3D G3DSA:3.90.1150.10 22 389 2.0E-145 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1040 2bae90ccc80a7f00e7cd65cdbb361ab6 136 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 27 47 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1040 2bae90ccc80a7f00e7cd65cdbb361ab6 136 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 51 132 7.0E-28 T 12-10-2018 IPR022204 Prepilin peptidase dependent protein C YPK_1040 2bae90ccc80a7f00e7cd65cdbb361ab6 136 Pfam PF07963 Prokaryotic N-terminal methylation motif 27 49 1.5E-4 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site YPK_1272 be258cdb15d52372acb4b84ecfa96505 340 Pfam PF03824 High-affinity nickel-transport protein 75 326 8.6E-42 T 12-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 Gene3D G3DSA:2.40.128.130 335 638 6.3E-70 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 Pfam PF03212 Pertactin 203 323 2.4E-31 T 12-10-2018 IPR004899 Pertactin, central region YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 SMART SM00869 380 627 1.1E-40 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 Gene3D G3DSA:2.160.20.20 25 325 9.4E-36 T 12-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 SUPERFAMILY SSF103515 349 638 6.93E-47 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 PRINTS PR01484 Pertactin virulence factor family signature 527 550 2.7E-10 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 PRINTS PR01484 Pertactin virulence factor family signature 359 377 2.7E-10 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 PRINTS PR01484 Pertactin virulence factor family signature 421 445 2.7E-10 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 PRINTS PR01484 Pertactin virulence factor family signature 593 618 2.7E-10 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 PRINTS PR01484 Pertactin virulence factor family signature 508 525 2.7E-10 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 PRINTS PR01484 Pertactin virulence factor family signature 618 638 2.7E-10 T 12-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 SUPERFAMILY SSF51126 24 323 5.65E-31 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 221 638 3.8E-116 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 YPK_3064 26d08f73e6fcd5e89b708d7ad2284cd4 638 Pfam PF03797 Autotransporter beta-domain 383 617 1.5E-46 T 12-10-2018 IPR005546 Autotransporter beta-domain YPK_4176 f8c9725c5164bdd779e2b848a3f2c202 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 12-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 YPK_4176 f8c9725c5164bdd779e2b848a3f2c202 207 Gene3D G3DSA:3.30.63.10 37 96 7.0E-74 T 12-10-2018 YPK_4176 f8c9725c5164bdd779e2b848a3f2c202 207 SMART SM00072 3 187 4.6E-80 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPK_4176 f8c9725c5164bdd779e2b848a3f2c202 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 1.6E-74 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 YPK_4176 f8c9725c5164bdd779e2b848a3f2c202 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 37.052 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 YPK_4176 f8c9725c5164bdd779e2b848a3f2c202 207 SUPERFAMILY SSF52540 3 189 1.58E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4176 f8c9725c5164bdd779e2b848a3f2c202 207 Gene3D G3DSA:3.40.50.300 8 183 7.0E-74 T 12-10-2018 YPK_4176 f8c9725c5164bdd779e2b848a3f2c202 207 Pfam PF00625 Guanylate kinase 5 186 1.4E-66 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YPK_1694 5dda3af317c5679a0f03ea27f8f4d3ec 477 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 414 431 - T 12-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YPK_1694 5dda3af317c5679a0f03ea27f8f4d3ec 477 Pfam PF02378 Phosphotransferase system, EIIC 13 320 2.9E-83 T 12-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YPK_1694 5dda3af317c5679a0f03ea27f8f4d3ec 477 Gene3D G3DSA:3.30.1360.60 397 477 2.9E-31 T 12-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YPK_1694 5dda3af317c5679a0f03ea27f8f4d3ec 477 Pfam PF00367 phosphotransferase system, EIIB 404 436 2.4E-14 T 12-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 YPK_1694 5dda3af317c5679a0f03ea27f8f4d3ec 477 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 377 460 2.1E-26 T 12-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 YPK_1694 5dda3af317c5679a0f03ea27f8f4d3ec 477 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 475 3.4E-227 T 12-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 YPK_1694 5dda3af317c5679a0f03ea27f8f4d3ec 477 SUPERFAMILY SSF55604 401 474 1.14E-20 T 12-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 YPK_0961 1ded549f15d2589b0abe3b8fc18999dc 226 SUPERFAMILY SSF46785 63 184 8.0E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0961 1ded549f15d2589b0abe3b8fc18999dc 226 Pfam PF03551 Transcriptional regulator PadR-like family 68 137 4.4E-19 T 12-10-2018 IPR005149 Transcription regulator PadR, N-terminal YPK_0961 1ded549f15d2589b0abe3b8fc18999dc 226 Gene3D G3DSA:1.10.10.10 49 162 4.7E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0689 938de69e5afd06086b29a6dc37d02f90 195 Gene3D G3DSA:1.10.10.10 11 105 9.8E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_0689 938de69e5afd06086b29a6dc37d02f90 195 SUPERFAMILY SSF46894 24 99 4.25E-6 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_1949 d3bd04038668629484b9ead2d7d052b5 115 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 31 94 2.0E-15 T 12-10-2018 YPK_1949 d3bd04038668629484b9ead2d7d052b5 115 SUPERFAMILY SSF55021 24 97 4.01E-16 T 12-10-2018 YPK_1949 d3bd04038668629484b9ead2d7d052b5 115 Gene3D G3DSA:3.30.70.260 17 112 7.6E-29 T 12-10-2018 YPK_1949 d3bd04038668629484b9ead2d7d052b5 115 Pfam PF13710 ACT domain 34 94 5.5E-9 T 12-10-2018 YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 5.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 5.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 5.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 Gene3D G3DSA:3.40.50.720 4 256 2.4E-80 T 12-10-2018 YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 SUPERFAMILY SSF51735 16 255 9.52E-80 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 254 1.2E-68 T 12-10-2018 YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_3420 b9832fc0ea6371e08072f2931162f3f6 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_0427 eb5ec01e56692f7f59b220c0888f3f17 402 Pfam PF00872 Transposase, Mutator family 12 377 9.3E-115 T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_0427 eb5ec01e56692f7f59b220c0888f3f17 402 ProSitePatterns PS01007 Transposases, Mutator family, signature. 232 256 - T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 YPK_2150 4f9a4da33a91045c362033b3a2b9f65b 131 Pfam PF01124 MAPEG family 4 120 2.8E-24 T 12-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein YPK_2150 4f9a4da33a91045c362033b3a2b9f65b 131 Gene3D G3DSA:1.20.120.550 1 128 8.4E-25 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YPK_2150 4f9a4da33a91045c362033b3a2b9f65b 131 SUPERFAMILY SSF161084 4 125 8.11E-30 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily YPK_0929 204ef5d88db5f0fed3fec384f7da20c1 172 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 40 171 2.5E-17 T 12-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_1413 37fd6d89603deb605a660f5de77acbe9 410 Gene3D G3DSA:3.80.10.10 24 195 3.6E-15 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily YPK_1413 37fd6d89603deb605a660f5de77acbe9 410 SUPERFAMILY SSF52058 63 181 4.42E-9 T 12-10-2018 YPK_1977 cfd0565bf341171c5721b721611c9542 124 Hamap MF_01581 UPF0482 protein YnfB [ynfB]. 2 124 32.655 T 12-10-2018 IPR009700 Protein of unknown function DUF1283 YPK_1977 cfd0565bf341171c5721b721611c9542 124 ProDom PD073251 YNFB PERIPLASMIC SECRETED ORF9 PRECURSOR SIGNAL SIMILAR ECS2289 EXPORTED ESCHERICHIA 30 124 2.0E-50 T 12-10-2018 IPR009700 Protein of unknown function DUF1283 YPK_1977 cfd0565bf341171c5721b721611c9542 124 Pfam PF06932 Protein of unknown function (DUF1283) 42 124 2.6E-38 T 12-10-2018 IPR009700 Protein of unknown function DUF1283 YPK_2938 5e69b7b4777c4a7fe9ce935630257dcb 50 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 46 5.3E-31 T 12-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 YPK_2938 5e69b7b4777c4a7fe9ce935630257dcb 50 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 47 19.556 T 12-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 Gene3D G3DSA:1.10.10.60 168 271 5.5E-19 T 12-10-2018 YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 252 3.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 268 3.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 Pfam PF07883 Cupin domain 25 77 1.4E-6 T 12-10-2018 IPR013096 Cupin 2, conserved barrel YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 SUPERFAMILY SSF51182 8 90 4.27E-12 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 SUPERFAMILY SSF46689 221 272 1.3E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 Gene3D G3DSA:2.60.120.10 8 100 4.2E-9 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 Pfam PF12833 Helix-turn-helix domain 196 269 9.5E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 222 264 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 YPK_1147 6d6b712dc3f604988f6ab86acce4e0bb 280 SMART SM00342 185 268 5.6E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_1179 4c87e023162103e34f1658f3b3715121 441 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 4 427 49.423 T 12-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 YPK_1179 4c87e023162103e34f1658f3b3715121 441 Gene3D G3DSA:3.40.50.300 1 212 5.1E-71 T 12-10-2018 YPK_1179 4c87e023162103e34f1658f3b3715121 441 SUPERFAMILY SSF52540 76 359 1.17E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1179 4c87e023162103e34f1658f3b3715121 441 Pfam PF00271 Helicase conserved C-terminal domain 235 343 1.1E-26 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_1179 4c87e023162103e34f1658f3b3715121 441 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site YPK_1179 4c87e023162103e34f1658f3b3715121 441 SMART SM00490 262 343 9.9E-27 T 12-10-2018 IPR001650 Helicase, C-terminal YPK_1179 4c87e023162103e34f1658f3b3715121 441 Pfam PF00270 DEAD/DEAH box helicase 28 196 1.5E-46 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 YPK_1179 4c87e023162103e34f1658f3b3715121 441 SMART SM00487 23 225 5.6E-58 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_1179 4c87e023162103e34f1658f3b3715121 441 Gene3D G3DSA:3.40.50.300 219 388 3.1E-48 T 12-10-2018 YPK_2189 ec5d8ccc0dd0f570da5639705acc03fb 231 Pfam PF14358 Domain of unknown function (DUF4405) 73 131 1.3E-13 T 12-10-2018 IPR025517 Domain of unknown function DUF4405 YPK_2189 ec5d8ccc0dd0f570da5639705acc03fb 231 SUPERFAMILY SSF81342 16 133 2.67E-5 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YPK_3272 9f0e16d842fa9d12f91423a4022a0854 463 Pfam PF00324 Amino acid permease 17 455 5.1E-108 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YPK_3272 9f0e16d842fa9d12f91423a4022a0854 463 Gene3D G3DSA:1.20.1740.10 7 462 1.1E-61 T 12-10-2018 YPK_3272 9f0e16d842fa9d12f91423a4022a0854 463 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YPK_3272 9f0e16d842fa9d12f91423a4022a0854 463 PIRSF PIRSF006060 4 463 1.6E-71 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_3555 aed4c330a494f4b0ccb7e9c866d9aae4 205 Pfam PF12059 Protein of unknown function (DUF3540) 133 205 9.7E-13 T 12-10-2018 IPR021927 Protein of unknown function DUF3540 YPK_3555 aed4c330a494f4b0ccb7e9c866d9aae4 205 Pfam PF12059 Protein of unknown function (DUF3540) 55 127 2.2E-10 T 12-10-2018 IPR021927 Protein of unknown function DUF3540 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 162 3.1E-50 T 12-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 38.166 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 PIRSF PIRSF000114 1 336 2.9E-100 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 8.8E-41 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 8.8E-41 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 8.8E-41 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 8.8E-41 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 8.8E-41 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 8.8E-41 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 Gene3D G3DSA:3.40.50.720 2 191 4.3E-55 T 12-10-2018 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 7.1E-53 T 12-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 SUPERFAMILY SSF48179 184 335 2.44E-58 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 Gene3D G3DSA:1.10.1040.10 193 338 4.2E-53 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 YPK_4137 8038d88a40870595258e6de0f9e84ed5 339 SUPERFAMILY SSF51735 8 182 3.7E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_4194 b858999102eff2e0dcf3d3eb962f8031 216 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 16 199 27.446 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 YPK_4194 b858999102eff2e0dcf3d3eb962f8031 216 Pfam PF01926 50S ribosome-binding GTPase 30 148 6.4E-20 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 YPK_4194 b858999102eff2e0dcf3d3eb962f8031 216 SUPERFAMILY SSF52540 19 201 1.4E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_4194 b858999102eff2e0dcf3d3eb962f8031 216 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 12 195 6.8E-73 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 YPK_4194 b858999102eff2e0dcf3d3eb962f8031 216 Gene3D G3DSA:3.40.50.300 4 205 9.4E-58 T 12-10-2018 YPK_1394 e6301cecabd54f763475bc38ad36d8db 141 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 1 141 56.391 T 12-10-2018 IPR023072 Acetyltransferase, YpeA GO:0016747 YPK_1394 e6301cecabd54f763475bc38ad36d8db 141 SUPERFAMILY SSF55729 1 130 8.1E-30 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_1394 e6301cecabd54f763475bc38ad36d8db 141 Gene3D G3DSA:3.40.630.30 1 141 2.5E-43 T 12-10-2018 YPK_1394 e6301cecabd54f763475bc38ad36d8db 141 Pfam PF00583 Acetyltransferase (GNAT) family 22 123 7.8E-19 T 12-10-2018 IPR000182 GNAT domain YPK_1095 aa465b4bf5d0659069b05f7d8df2924f 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 214 1.4E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1095 aa465b4bf5d0659069b05f7d8df2924f 217 Gene3D G3DSA:1.10.3720.10 1 217 2.6E-61 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1095 aa465b4bf5d0659069b05f7d8df2924f 217 SUPERFAMILY SSF161098 9 201 1.06E-47 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 SUPERFAMILY SSF69065 1 137 2.62E-43 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 SMART SM00358 134 202 1.5E-23 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 1 201 8.5E-69 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 SUPERFAMILY SSF54768 87 201 1.73E-27 T 12-10-2018 YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 Gene3D G3DSA:3.30.160.20 132 202 2.2E-20 T 12-10-2018 YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 Hamap MF_00104 Ribonuclease 3 [rnc]. 1 198 24.685 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 Pfam PF00035 Double-stranded RNA binding motif 134 201 2.4E-15 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 Pfam PF14622 Ribonuclease-III-like 1 120 5.6E-32 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 ProSitePatterns PS00517 Ribonuclease III family signature. 16 24 - T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 SMART SM00535 1 127 2.1E-51 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 YPK_1189 ca7a6d1ebd8cc3e0c831511423a18a7b 204 Gene3D G3DSA:1.10.1520.10 1 125 1.2E-36 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 526 3.9E-40 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 Gene3D G3DSA:3.40.50.970 1 178 5.0E-61 T 12-10-2018 YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 319 1.2E-32 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 SUPERFAMILY SSF52518 2 178 1.0E-44 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 6.7E-43 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 SUPERFAMILY SSF52518 357 558 3.93E-61 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 SUPERFAMILY SSF52467 182 351 1.42E-45 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 Gene3D G3DSA:3.40.50.1220 179 333 7.8E-50 T 12-10-2018 YPK_2703 40c3a489850c03c7d24edcbee029bc9b 573 Gene3D G3DSA:3.40.50.970 348 573 2.4E-73 T 12-10-2018 YPK_2523 b1c4bd8e5917fd04d70c6f2b1e0bbfe0 178 Gene3D G3DSA:1.20.120.1620 78 177 5.6E-31 T 12-10-2018 IPR038314 T6SS superfamily YPK_2523 b1c4bd8e5917fd04d70c6f2b1e0bbfe0 178 Pfam PF16695 Type VI secretion system (T6SS), amidase immunity protein 88 169 3.5E-12 T 12-10-2018 IPR032032 Type VI secretion system (T6SS), amidase immunity protein YPK_0828 47f1a81e1232f7d29e9cd15d1c316d81 96 SMART SM01152 7 83 8.3E-39 T 12-10-2018 IPR003746 Protein of unknown function DUF167 YPK_0828 47f1a81e1232f7d29e9cd15d1c316d81 96 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 10 81 6.4E-26 T 12-10-2018 IPR003746 Protein of unknown function DUF167 YPK_0828 47f1a81e1232f7d29e9cd15d1c316d81 96 Gene3D G3DSA:3.30.1200.10 1 96 5.7E-36 T 12-10-2018 IPR036591 YggU-like superfamily YPK_0828 47f1a81e1232f7d29e9cd15d1c316d81 96 SUPERFAMILY SSF69786 4 95 1.83E-32 T 12-10-2018 IPR036591 YggU-like superfamily YPK_0828 47f1a81e1232f7d29e9cd15d1c316d81 96 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 95 20.522 T 12-10-2018 IPR003746 Protein of unknown function DUF167 YPK_0828 47f1a81e1232f7d29e9cd15d1c316d81 96 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 7 91 2.3E-30 T 12-10-2018 IPR005228 Conserved hypothetical protein CHP00251 YPK_0861 066f8c61ca88b7c6ee170bc042f943bd 109 Gene3D G3DSA:1.10.20.30 1 47 7.0E-25 T 12-10-2018 YPK_0861 066f8c61ca88b7c6ee170bc042f943bd 109 SUPERFAMILY SSF102829 6 94 1.96E-23 T 12-10-2018 IPR036192 Cell division protein ZapA-like superfamily YPK_0861 066f8c61ca88b7c6ee170bc042f943bd 109 Hamap MF_02012 Cell division protein ZapA [zapA]. 1 109 32.76 T 12-10-2018 IPR023771 Cell division protein ZapA, eubacteria YPK_0861 066f8c61ca88b7c6ee170bc042f943bd 109 Gene3D G3DSA:1.20.5.50 49 100 4.6E-6 T 12-10-2018 YPK_0861 066f8c61ca88b7c6ee170bc042f943bd 109 Pfam PF05164 Cell division protein ZapA 6 90 2.1E-17 T 12-10-2018 IPR007838 Cell division protein ZapA-like YPK_2126 954e6506df7cccfd80fa026984519116 201 PIRSF PIRSF004982 17 197 4.0E-47 T 12-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 YPK_2126 954e6506df7cccfd80fa026984519116 201 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 27 196 3.6E-61 T 12-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 YPK_2126 954e6506df7cccfd80fa026984519116 201 Pfam PF03843 Outer membrane lipoprotein Slp family 30 174 2.4E-47 T 12-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 YPK_0970 7db9a2fbc0fde570d8437ebbe3d73b6c 435 Gene3D G3DSA:1.10.3720.10 178 434 2.5E-62 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0970 7db9a2fbc0fde570d8437ebbe3d73b6c 435 SUPERFAMILY SSF160964 128 187 5.36E-8 T 12-10-2018 YPK_0970 7db9a2fbc0fde570d8437ebbe3d73b6c 435 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 219 418 9.0E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0970 7db9a2fbc0fde570d8437ebbe3d73b6c 435 SUPERFAMILY SSF161098 182 418 1.14E-52 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3144 f4470332fc783226106968377afe8f99 682 Gene3D G3DSA:3.40.50.300 217 371 9.4E-11 T 12-10-2018 YPK_3144 f4470332fc783226106968377afe8f99 682 Pfam PF13175 AAA ATPase domain 281 353 4.1E-20 T 12-10-2018 YPK_3144 f4470332fc783226106968377afe8f99 682 Gene3D G3DSA:3.40.50.300 1 97 6.0E-12 T 12-10-2018 YPK_3144 f4470332fc783226106968377afe8f99 682 Pfam PF13476 AAA domain 6 57 2.0E-7 T 12-10-2018 IPR038729 Rad50/SbcC-type AAA domain YPK_3144 f4470332fc783226106968377afe8f99 682 SUPERFAMILY SSF52540 1 361 2.81E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0343 3eeab0004f483f326e2171a1201099fc 271 Gene3D G3DSA:3.20.20.70 1 267 1.9E-105 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0343 3eeab0004f483f326e2171a1201099fc 271 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 236 9.4E-105 T 12-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 YPK_0343 3eeab0004f483f326e2171a1201099fc 271 SUPERFAMILY SSF110399 1 235 9.68E-84 T 12-10-2018 YPK_0343 3eeab0004f483f326e2171a1201099fc 271 Hamap MF_00443 Thiazole synthase [thiG]. 1 263 42.89 T 12-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 YPK_3291 acc40e1a6bccb295fde929e959827058 152 SUPERFAMILY SSF53271 4 144 2.1E-31 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_3291 acc40e1a6bccb295fde929e959827058 152 Gene3D G3DSA:3.40.50.2020 1 152 4.2E-43 T 12-10-2018 YPK_3291 acc40e1a6bccb295fde929e959827058 152 Pfam PF00156 Phosphoribosyl transferase domain 11 145 1.6E-17 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YPK_3291 acc40e1a6bccb295fde929e959827058 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.845 T 12-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 YPK_3334 dabba7abe4b79a1ea35d5e71528e2327 399 Pfam PF07690 Major Facilitator Superfamily 19 276 9.3E-29 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3334 dabba7abe4b79a1ea35d5e71528e2327 399 SUPERFAMILY SSF103473 9 390 2.35E-55 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3334 dabba7abe4b79a1ea35d5e71528e2327 399 Gene3D G3DSA:1.20.1250.20 10 386 2.2E-46 T 12-10-2018 YPK_2233 ae9751440d88d1456a579271f9a3770b 366 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 11 364 7.7E-103 T 12-10-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 YPK_2233 ae9751440d88d1456a579271f9a3770b 366 Pfam PF01699 Sodium/calcium exchanger protein 42 192 4.7E-13 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 YPK_2233 ae9751440d88d1456a579271f9a3770b 366 Pfam PF01699 Sodium/calcium exchanger protein 223 363 1.1E-7 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 YPK_3925 6d58dd22ccdb0ace700af6806bde224a 251 Pfam PF13683 Integrase core domain 173 238 4.0E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YPK_3925 6d58dd22ccdb0ace700af6806bde224a 251 SUPERFAMILY SSF53098 82 245 1.77E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_3925 6d58dd22ccdb0ace700af6806bde224a 251 Pfam PF13276 HTH-like domain 16 70 1.2E-11 T 12-10-2018 IPR025948 HTH-like domain YPK_3925 6d58dd22ccdb0ace700af6806bde224a 251 Gene3D G3DSA:3.30.420.10 80 235 7.2E-20 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_0473 e2c9276013708eba47279928e22ba194 952 Gene3D G3DSA:3.90.190.10 758 941 1.5E-7 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like YPK_0473 e2c9276013708eba47279928e22ba194 952 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 859 869 - T 12-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 YPK_0473 e2c9276013708eba47279928e22ba194 952 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 589 669 1.3E-26 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YPK_0473 e2c9276013708eba47279928e22ba194 952 SUPERFAMILY SSF52799 801 886 1.27E-5 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like YPK_0473 e2c9276013708eba47279928e22ba194 952 Gene3D G3DSA:2.180.10.10 6 669 1.7E-233 T 12-10-2018 YPK_0473 e2c9276013708eba47279928e22ba194 952 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 221 249 3.3E-4 T 12-10-2018 IPR006530 YD repeat YPK_3466 fcccbde9c3567efff5dd3b43e7b883cf 191 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 12 181 21.543 T 12-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 YPK_3466 fcccbde9c3567efff5dd3b43e7b883cf 191 SUPERFAMILY SSF55144 13 183 2.62E-44 T 12-10-2018 IPR009097 Cyclic phosphodiesterase YPK_3466 fcccbde9c3567efff5dd3b43e7b883cf 191 Gene3D G3DSA:3.90.1140.10 8 182 2.6E-49 T 12-10-2018 YPK_3466 fcccbde9c3567efff5dd3b43e7b883cf 191 Pfam PF02834 LigT like Phosphoesterase 19 96 2.6E-12 T 12-10-2018 IPR014051 Phosphoesterase, HXTX YPK_3466 fcccbde9c3567efff5dd3b43e7b883cf 191 Pfam PF02834 LigT like Phosphoesterase 100 173 1.5E-6 T 12-10-2018 IPR014051 Phosphoesterase, HXTX YPK_3466 fcccbde9c3567efff5dd3b43e7b883cf 191 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 13 181 5.3E-37 T 12-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 YPK_3303 285a8ae1c741f24d0cc32615229eb1ca 266 PIRSF PIRSF009437 2 264 6.8E-102 T 12-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 YPK_3303 285a8ae1c741f24d0cc32615229eb1ca 266 SMART SM00900 151 249 1.4E-36 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 YPK_3303 285a8ae1c741f24d0cc32615229eb1ca 266 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 10 261 36.735 T 12-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 YPK_3303 285a8ae1c741f24d0cc32615229eb1ca 266 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 9 257 5.9E-102 T 12-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 YPK_3303 285a8ae1c741f24d0cc32615229eb1ca 266 Pfam PF04205 FMN-binding domain 151 246 7.9E-17 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 YPK_3794 5255d9c09be02e12d166409501873dc2 84 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 23 78 5.8E-21 T 12-10-2018 IPR019201 Protein of unknown function DUF2065 YPK_1087 10ba1628845ff53e67d7bc89ac372e32 66 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 66 26.197 T 12-10-2018 IPR009624 Uncharacterised protein family UPF0253 YPK_1087 10ba1628845ff53e67d7bc89ac372e32 66 Pfam PF06786 Uncharacterised protein family (UPF0253) 2 65 6.2E-37 T 12-10-2018 IPR009624 Uncharacterised protein family UPF0253 YPK_1087 10ba1628845ff53e67d7bc89ac372e32 66 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 1 66 1.0E-30 T 12-10-2018 IPR009624 Uncharacterised protein family UPF0253 YPK_4182 e2e7830f82c48f48a745da49608f5ec0 472 TIGRFAM TIGR03173 pbuX: xanthine permease 49 469 3.4E-127 T 12-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 YPK_4182 e2e7830f82c48f48a745da49608f5ec0 472 Pfam PF00860 Permease family 44 436 8.8E-109 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 YPK_4182 e2e7830f82c48f48a745da49608f5ec0 472 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 39 467 5.4E-140 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 YPK_4182 e2e7830f82c48f48a745da49608f5ec0 472 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 385 405 - T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 YPK_3977 0f174b6e35fc67a567d9cfe7ed461537 317 Pfam PF02687 FtsX-like permease family 218 307 2.4E-6 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YPK_3977 0f174b6e35fc67a567d9cfe7ed461537 317 PIRSF PIRSF003097 16 313 1.2E-94 T 12-10-2018 IPR004513 Cell division protein FtsX GO:0016021 YPK_3977 0f174b6e35fc67a567d9cfe7ed461537 317 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 19 316 1.6E-130 T 12-10-2018 IPR004513 Cell division protein FtsX GO:0016021 YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 12-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 Gene3D G3DSA:3.40.250.10 152 276 1.5E-38 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 SMART SM00450 7 133 1.4E-24 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 SMART SM00450 156 276 3.0E-19 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 SUPERFAMILY SSF52821 1 152 3.4E-41 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 Pfam PF00581 Rhodanese-like domain 158 272 7.4E-12 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 Pfam PF00581 Rhodanese-like domain 8 129 4.4E-17 T 12-10-2018 IPR001763 Rhodanese-like domain YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 Gene3D G3DSA:3.40.250.10 2 150 9.6E-48 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 ProSitePatterns PS00683 Rhodanese C-terminal signature. 260 270 - T 12-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 YPK_2866 01432d94d2a8fadd13ebaa917a91e3fe 284 SUPERFAMILY SSF52821 159 279 3.8E-33 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily YPK_3476 d39f8b2716cefe66a21d64622d62275f 256 Pfam PF01061 ABC-2 type transporter 9 218 3.4E-37 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 YPK_3476 d39f8b2716cefe66a21d64622d62275f 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 1.7E-6 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YPK_3476 d39f8b2716cefe66a21d64622d62275f 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 1.7E-6 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YPK_3476 d39f8b2716cefe66a21d64622d62275f 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 1.7E-6 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YPK_3476 d39f8b2716cefe66a21d64622d62275f 256 PIRSF PIRSF006648 8 253 4.0E-24 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 YPK_1814 379838de1622bbfd1edf1f50031b71fd 296 SMART SM00382 36 222 9.5E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1814 379838de1622bbfd1edf1f50031b71fd 296 Pfam PF00005 ABC transporter 29 174 4.7E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1814 379838de1622bbfd1edf1f50031b71fd 296 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1814 379838de1622bbfd1edf1f50031b71fd 296 SUPERFAMILY SSF52540 5 237 6.25E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1814 379838de1622bbfd1edf1f50031b71fd 296 Gene3D G3DSA:3.40.50.300 9 249 2.7E-58 T 12-10-2018 YPK_0376 68fad138996df6310278ae767dae9920 296 SUPERFAMILY SSF161098 8 296 1.96E-68 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0376 68fad138996df6310278ae767dae9920 296 Gene3D G3DSA:1.10.3720.10 1 283 2.9E-72 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0376 68fad138996df6310278ae767dae9920 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 286 5.9E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3440 2ef882674b9d6a8aa934ff9dc1a11d66 244 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 24 242 1.1E-93 T 12-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 YPK_3440 2ef882674b9d6a8aa934ff9dc1a11d66 244 SUPERFAMILY SSF52402 24 208 1.29E-51 T 12-10-2018 YPK_3440 2ef882674b9d6a8aa934ff9dc1a11d66 244 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 33 243 1.4E-87 T 12-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 YPK_3440 2ef882674b9d6a8aa934ff9dc1a11d66 244 Gene3D G3DSA:3.40.50.620 2 216 1.1E-62 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_3440 2ef882674b9d6a8aa934ff9dc1a11d66 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 48 219 4.2E-48 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 YPK_3440 2ef882674b9d6a8aa934ff9dc1a11d66 244 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 9 243 39.292 T 12-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 YPK_3440 2ef882674b9d6a8aa934ff9dc1a11d66 244 PIRSF PIRSF000857 3 244 3.4E-53 T 12-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 6.2E-127 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 Gene3D G3DSA:3.40.50.2020 148 290 9.5E-137 T 12-10-2018 YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 SMART SM01400 4 121 5.7E-76 T 12-10-2018 YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 2.1E-30 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 SUPERFAMILY SSF53271 69 306 2.5E-67 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 Gene3D G3DSA:3.40.50.2020 7 302 9.5E-137 T 12-10-2018 YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 1.9E-49 T 12-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 49.844 T 12-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 YPK_2184 a13c46a180fedb5b34ec513b2898a05b 315 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 12-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 YPK_4139 5bc3aad8df72deac04cf0c261d1a961f 82 Gene3D G3DSA:3.40.30.10 1 82 2.1E-29 T 12-10-2018 YPK_4139 5bc3aad8df72deac04cf0c261d1a961f 82 PRINTS PR00160 Glutaredoxin signature 60 73 2.5E-17 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_4139 5bc3aad8df72deac04cf0c261d1a961f 82 PRINTS PR00160 Glutaredoxin signature 46 59 2.5E-17 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_4139 5bc3aad8df72deac04cf0c261d1a961f 82 PRINTS PR00160 Glutaredoxin signature 4 22 2.5E-17 T 12-10-2018 IPR014025 Glutaredoxin subgroup YPK_4139 5bc3aad8df72deac04cf0c261d1a961f 82 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 12-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 YPK_4139 5bc3aad8df72deac04cf0c261d1a961f 82 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 7.3E-37 T 12-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 YPK_4139 5bc3aad8df72deac04cf0c261d1a961f 82 Pfam PF00462 Glutaredoxin 4 63 5.0E-25 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YPK_4139 5bc3aad8df72deac04cf0c261d1a961f 82 SUPERFAMILY SSF52833 1 82 1.14E-29 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_2628 53a26ea85d5d8f9a5d6b14ed66f214f0 211 Pfam PF04993 TfoX N-terminal domain 18 105 2.1E-26 T 12-10-2018 IPR007076 TfoX, N-terminal YPK_2628 53a26ea85d5d8f9a5d6b14ed66f214f0 211 Gene3D G3DSA:1.10.150.20 116 204 1.7E-20 T 12-10-2018 YPK_2628 53a26ea85d5d8f9a5d6b14ed66f214f0 211 SUPERFAMILY SSF159894 16 106 1.12E-27 T 12-10-2018 YPK_2628 53a26ea85d5d8f9a5d6b14ed66f214f0 211 Pfam PF04994 TfoX C-terminal domain 119 196 7.8E-23 T 12-10-2018 IPR007077 TfoX, C-terminal YPK_2628 53a26ea85d5d8f9a5d6b14ed66f214f0 211 PIRSF PIRSF028788 1 205 6.9E-61 T 12-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type YPK_2628 53a26ea85d5d8f9a5d6b14ed66f214f0 211 Gene3D G3DSA:3.30.1460.30 5 108 6.4E-28 T 12-10-2018 YPK_0090 d1d999c08d6135b2936d866075a4f8a0 300 SUPERFAMILY SSF161098 93 280 1.57E-29 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0090 d1d999c08d6135b2936d866075a4f8a0 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 7.1E-30 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0090 d1d999c08d6135b2936d866075a4f8a0 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 7.4E-14 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain YPK_0090 d1d999c08d6135b2936d866075a4f8a0 300 Gene3D G3DSA:1.10.3720.10 88 295 9.2E-24 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0600 e47c076c099f711aa3b0ce09e3563041 483 Pfam PF03553 Na+/H+ antiporter family 17 188 2.8E-10 T 12-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 YPK_4047 ebfb2d7468f9b57af794e18cf5a37ac9 85 SUPERFAMILY SSF47345 1 85 2.35E-37 T 12-10-2018 IPR035900 Colicin E immunity protein superfamily YPK_4047 ebfb2d7468f9b57af794e18cf5a37ac9 85 Gene3D G3DSA:1.10.1200.20 1 85 2.4E-38 T 12-10-2018 IPR035900 Colicin E immunity protein superfamily YPK_4047 ebfb2d7468f9b57af794e18cf5a37ac9 85 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 40 56 1.3E-24 T 12-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YPK_4047 ebfb2d7468f9b57af794e18cf5a37ac9 85 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 4 22 1.3E-24 T 12-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YPK_4047 ebfb2d7468f9b57af794e18cf5a37ac9 85 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 63 84 1.3E-24 T 12-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YPK_4047 ebfb2d7468f9b57af794e18cf5a37ac9 85 ProDom PD007225 IMMUNITY COLICIN BACTERIOCIN PLASMID PROTEIN/PYOCIN ORFU3 ORFU1 PYOCIN 3D-STRUCTURE GENES 9 84 4.0E-40 T 12-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YPK_4047 ebfb2d7468f9b57af794e18cf5a37ac9 85 Pfam PF01320 Colicin immunity protein / pyocin immunity protein 4 84 1.4E-39 T 12-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 YPK_0257 2f16dd88e834b348af7d922a63c95801 200 Pfam PF01810 LysE type translocator 16 178 5.5E-15 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YPK_0780 1bb4e86a1ff6b37d8d45525cc928c2fd 357 SUPERFAMILY SSF51445 6 334 1.95E-52 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily YPK_0780 1bb4e86a1ff6b37d8d45525cc928c2fd 357 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 30 295 4.1E-12 T 12-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 YPK_0780 1bb4e86a1ff6b37d8d45525cc928c2fd 357 Gene3D G3DSA:3.20.20.80 20 313 9.5E-32 T 12-10-2018 YPK_2343 114aca4c26678afd8fd0d6d23b0712e0 302 Pfam PF04865 Baseplate J-like protein 117 261 6.4E-28 T 12-10-2018 IPR006949 Baseplate protein J-like YPK_2343 114aca4c26678afd8fd0d6d23b0712e0 302 PIRSF PIRSF020481 1 302 1.9E-131 T 12-10-2018 IPR014507 Baseplate assembly protein J, predicted YPK_0721 87b1cef90a6d651885685586fd0191f1 218 Pfam PF13861 FlgD Tudor-like domain 85 214 2.4E-11 T 12-10-2018 IPR025963 FlgD Tudor-like domain YPK_0721 87b1cef90a6d651885685586fd0191f1 218 Pfam PF03963 Flagellar hook capping protein - N-terminal region 21 76 3.4E-18 T 12-10-2018 IPR005648 Flagellar hook capping protein YPK_0721 87b1cef90a6d651885685586fd0191f1 218 Gene3D G3DSA:2.60.40.4070 102 181 3.0E-18 T 12-10-2018 YPK_0721 87b1cef90a6d651885685586fd0191f1 218 Gene3D G3DSA:2.30.30.910 91 213 3.0E-18 T 12-10-2018 YPK_0721 87b1cef90a6d651885685586fd0191f1 218 Pfam PF13860 FlgD Ig-like domain 108 172 1.4E-8 T 12-10-2018 IPR025965 FlgD Ig-like domain YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 314 331 6.5E-14 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 94 104 6.5E-14 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 6.5E-14 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 50 61 6.5E-14 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 236 248 6.5E-14 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 Gene3D G3DSA:2.40.160.10 22 360 1.4E-137 T 12-10-2018 IPR023614 Porin domain superfamily YPK_2224 e53a864c0071ed615503cb587279f13c 360 Pfam PF00267 Gram-negative porin 27 360 5.7E-130 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 149 171 1.5E-52 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 94 116 1.5E-52 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 242 259 1.5E-52 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 270 289 1.5E-52 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.5E-52 T 12-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 YPK_2224 e53a864c0071ed615503cb587279f13c 360 SUPERFAMILY SSF56935 22 360 1.6E-71 T 12-10-2018 YPK_1477 5b905c8c9983251a9651a6ca9ea840f8 890 Pfam PF00577 Outer membrane usher protein 234 795 5.2E-147 T 12-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 YPK_1477 5b905c8c9983251a9651a6ca9ea840f8 890 SUPERFAMILY SSF141729 61 186 7.98E-28 T 12-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 YPK_1477 5b905c8c9983251a9651a6ca9ea840f8 890 Gene3D G3DSA:3.10.20.410 61 186 2.1E-27 T 12-10-2018 YPK_1477 5b905c8c9983251a9651a6ca9ea840f8 890 Gene3D G3DSA:2.60.40.2610 711 802 4.4E-26 T 12-10-2018 YPK_1477 5b905c8c9983251a9651a6ca9ea840f8 890 Gene3D G3DSA:2.60.40.3110 302 391 6.5E-31 T 12-10-2018 YPK_1477 5b905c8c9983251a9651a6ca9ea840f8 890 Pfam PF13954 PapC N-terminal domain 62 208 3.7E-37 T 12-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 PRINTS PR00173 Glutamate-aspartate symporter signature 370 389 1.4E-26 T 12-10-2018 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 1.4E-26 T 12-10-2018 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 1.4E-26 T 12-10-2018 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 1.4E-26 T 12-10-2018 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 1.4E-26 T 12-10-2018 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 PRINTS PR00173 Glutamate-aspartate symporter signature 397 417 1.4E-26 T 12-10-2018 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 Gene3D G3DSA:1.10.3860.10 19 459 1.1E-109 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 SUPERFAMILY SSF118215 29 442 1.19E-98 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 YPK_1795 1c20bff18d9cbe07f0368d0d9c25bfdb 463 Pfam PF00375 Sodium:dicarboxylate symporter family 29 442 1.0E-105 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 YPK_1375 4ec6c42b5e66e6b0ecdd44b0b85fccee 362 SUPERFAMILY SSF53850 40 339 2.94E-52 T 12-10-2018 YPK_1375 4ec6c42b5e66e6b0ecdd44b0b85fccee 362 Pfam PF13416 Bacterial extracellular solute-binding protein 59 319 9.9E-22 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_1375 4ec6c42b5e66e6b0ecdd44b0b85fccee 362 Gene3D G3DSA:3.40.190.10 142 357 1.1E-113 T 12-10-2018 YPK_1375 4ec6c42b5e66e6b0ecdd44b0b85fccee 362 Gene3D G3DSA:3.40.190.10 45 344 1.1E-113 T 12-10-2018 YPK_0105 5db41bb4244d11304c916ecdc34eec3a 265 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 41 258 2.1E-91 T 12-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 YPK_0105 5db41bb4244d11304c916ecdc34eec3a 265 Gene3D G3DSA:3.30.428.30 35 259 8.4E-91 T 12-10-2018 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily KEGG: 00564+3.6.1.26 YPK_0105 5db41bb4244d11304c916ecdc34eec3a 265 PIRSF PIRSF001273 11 263 3.1E-113 T 12-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 YPK_0105 5db41bb4244d11304c916ecdc34eec3a 265 SUPERFAMILY SSF54197 41 258 4.08E-87 T 12-10-2018 IPR036265 HIT-like superfamily YPK_0105 5db41bb4244d11304c916ecdc34eec3a 265 Hamap MF_00319 CDP-diacylglycerol pyrophosphatase [cdh]. 3 260 39.535 T 12-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 YPK_1873 c21de816a4d57cc0f8c505e33e36a53b 545 Pfam PF08019 Domain of unknown function (DUF1705) 56 208 1.4E-49 T 12-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 YPK_1873 c21de816a4d57cc0f8c505e33e36a53b 545 SUPERFAMILY SSF53649 237 539 9.45E-23 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 YPK_1873 c21de816a4d57cc0f8c505e33e36a53b 545 Pfam PF00884 Sulfatase 237 525 1.4E-45 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 YPK_1873 c21de816a4d57cc0f8c505e33e36a53b 545 Gene3D G3DSA:3.40.720.10 215 545 1.1E-87 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 YPK_1612 cae86937179b5e68a3811971aeda9af7 496 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_1612 cae86937179b5e68a3811971aeda9af7 496 Pfam PF00005 ABC transporter 20 170 1.9E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1612 cae86937179b5e68a3811971aeda9af7 496 SMART SM00382 29 217 1.7E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1612 cae86937179b5e68a3811971aeda9af7 496 SMART SM00382 279 480 9.6E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_1612 cae86937179b5e68a3811971aeda9af7 496 Pfam PF00005 ABC transporter 274 423 1.3E-17 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_1612 cae86937179b5e68a3811971aeda9af7 496 SUPERFAMILY SSF52540 272 485 3.32E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1612 cae86937179b5e68a3811971aeda9af7 496 Gene3D G3DSA:3.40.50.300 248 491 2.6E-41 T 12-10-2018 YPK_1612 cae86937179b5e68a3811971aeda9af7 496 Gene3D G3DSA:3.40.50.300 1 245 1.1E-55 T 12-10-2018 YPK_1612 cae86937179b5e68a3811971aeda9af7 496 SUPERFAMILY SSF52540 3 227 9.76E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0873 0378746dd3323d338d7f9e6754ff1ed3 233 Pfam PF03006 Haemolysin-III related 29 226 3.8E-38 T 12-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 YPK_0873 0378746dd3323d338d7f9e6754ff1ed3 233 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 32 233 4.6E-71 T 12-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 YPK_2919 6d9fe02426db8b10474307f2414d747c 151 Gene3D G3DSA:3.90.1170.40 2 151 2.3E-54 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 YPK_2919 6d9fe02426db8b10474307f2414d747c 151 SUPERFAMILY SSF54690 6 151 1.57E-53 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 YPK_2919 6d9fe02426db8b10474307f2414d747c 151 Pfam PF02391 MoaE protein 13 122 1.1E-35 T 12-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 YPK_4086 4642fc83c5599738ac36d71cb7c0a921 783 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 15 783 3.1E-121 T 12-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 YPK_4086 4642fc83c5599738ac36d71cb7c0a921 783 Gene3D G3DSA:2.170.130.10 17 143 8.5E-46 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily YPK_4086 4642fc83c5599738ac36d71cb7c0a921 783 Pfam PF00593 TonB dependent receptor 276 782 1.8E-36 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_4086 4642fc83c5599738ac36d71cb7c0a921 783 Gene3D G3DSA:2.40.170.20 145 783 1.6E-141 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_4086 4642fc83c5599738ac36d71cb7c0a921 783 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 7 783 2.5E-167 T 12-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 YPK_4086 4642fc83c5599738ac36d71cb7c0a921 783 SUPERFAMILY SSF56935 20 783 3.05E-84 T 12-10-2018 YPK_4086 4642fc83c5599738ac36d71cb7c0a921 783 Pfam PF07715 TonB-dependent Receptor Plug Domain 22 129 5.0E-16 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_4002 89d3aea2faf63f3ace63ceff76ad1b27 316 Pfam PF01544 CorA-like Mg2+ transporter protein 26 312 1.8E-53 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 YPK_4002 89d3aea2faf63f3ace63ceff76ad1b27 316 Gene3D G3DSA:1.20.58.340 240 316 7.4E-26 T 12-10-2018 YPK_4002 89d3aea2faf63f3ace63ceff76ad1b27 316 SUPERFAMILY SSF144083 251 314 1.31E-20 T 12-10-2018 YPK_4002 89d3aea2faf63f3ace63ceff76ad1b27 316 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 4 316 1.2E-106 T 12-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 YPK_4002 89d3aea2faf63f3ace63ceff76ad1b27 316 SUPERFAMILY SSF143865 1 255 7.85E-37 T 12-10-2018 YPK_3027 c11b031c550889f9fc70034d0cd85dd5 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 2.6E-160 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YPK_3027 c11b031c550889f9fc70034d0cd85dd5 321 Pfam PF04055 Radical SAM superfamily 91 251 2.9E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_3027 c11b031c550889f9fc70034d0cd85dd5 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 25 73 4.8E-8 T 12-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YPK_3027 c11b031c550889f9fc70034d0cd85dd5 321 Gene3D G3DSA:3.20.20.70 82 294 3.7E-21 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3027 c11b031c550889f9fc70034d0cd85dd5 321 PIRSF PIRSF005963 2 321 5.9E-131 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YPK_3027 c11b031c550889f9fc70034d0cd85dd5 321 SUPERFAMILY SSF102114 53 316 1.7E-68 T 12-10-2018 YPK_3027 c11b031c550889f9fc70034d0cd85dd5 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 157.033 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 YPK_3027 c11b031c550889f9fc70034d0cd85dd5 321 SMART SM00729 84 293 1.2E-16 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 YPK_2623 4c6b5827ed6b591c5308d3b55b4c565f 226 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 22 219 1.6E-45 T 12-10-2018 IPR018635 Uncharacterised protein family UPF0319 YPK_2623 4c6b5827ed6b591c5308d3b55b4c565f 226 Hamap MF_00789 UPF0319 protein YccT [yccT]. 3 222 26.187 T 12-10-2018 IPR018635 Uncharacterised protein family UPF0319 YPK_1449 d86ddad3fa31da20af89b6011764dfb5 223 Pfam PF03783 Curli production assembly/transport component CsgG 43 221 1.6E-33 T 12-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 YPK_1449 d86ddad3fa31da20af89b6011764dfb5 223 Gene3D G3DSA:3.40.50.10610 62 223 2.0E-5 T 12-10-2018 YPK_1449 d86ddad3fa31da20af89b6011764dfb5 223 SUPERFAMILY SSF52964 44 144 6.93E-9 T 12-10-2018 YPK_3750 7c3a1de704cded23bf8a5f62b66167a9 136 Pfam PF08346 AntA/AntB antirepressor 55 119 1.4E-18 T 12-10-2018 IPR013557 AntA/AntB antirepressor YPK_1536 968cf8e4153a4923bc268c6401208cc7 190 SUPERFAMILY SSF52507 2 187 4.71E-59 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 YPK_1536 968cf8e4153a4923bc268c6401208cc7 190 Pfam PF02441 Flavoprotein 2 165 5.8E-25 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 YPK_1536 968cf8e4153a4923bc268c6401208cc7 190 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 188 36.467 T 12-10-2018 IPR004507 Flavin prenyltransferase UbiX-like YPK_1536 968cf8e4153a4923bc268c6401208cc7 190 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 186 1.3E-71 T 12-10-2018 IPR004507 Flavin prenyltransferase UbiX-like YPK_1536 968cf8e4153a4923bc268c6401208cc7 190 Gene3D G3DSA:3.40.50.1950 2 190 1.1E-77 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 YPK_0412 aa668fdc0f2bfd5050d05d84330a4d0f 73 Pfam PF05954 Phage late control gene D protein (GPD) 2 59 4.2E-7 T 12-10-2018 YPK_0412 aa668fdc0f2bfd5050d05d84330a4d0f 73 SUPERFAMILY SSF69279 2 59 9.52E-14 T 12-10-2018 YPK_0412 aa668fdc0f2bfd5050d05d84330a4d0f 73 Gene3D G3DSA:3.30.1920.30 1 60 4.8E-12 T 12-10-2018 YPK_1162 884f6e6c26299d299b4c21e471205f42 160 Pfam PF08349 Protein of unknown function (DUF1722) 41 157 3.2E-36 T 12-10-2018 IPR013560 Domain of unknown function DUF1722 YPK_2991 9e764e708f78d6f974a5f4046fa7e73f 148 Gene3D G3DSA:1.10.10.10 1 83 1.6E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2991 9e764e708f78d6f974a5f4046fa7e73f 148 Gene3D G3DSA:3.30.1490.190 85 143 3.1E-24 T 12-10-2018 YPK_2991 9e764e708f78d6f974a5f4046fa7e73f 148 SUPERFAMILY SSF46785 5 134 2.15E-44 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2991 9e764e708f78d6f974a5f4046fa7e73f 148 Pfam PF01475 Ferric uptake regulator family 11 130 3.0E-47 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 YPK_3869 36e459cfbe5aec4ee2042e9ef9651a90 247 SUPERFAMILY SSF49584 165 239 3.79E-5 T 12-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily YPK_3869 36e459cfbe5aec4ee2042e9ef9651a90 247 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 47 158 4.9E-17 T 12-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 YPK_3869 36e459cfbe5aec4ee2042e9ef9651a90 247 Gene3D G3DSA:2.60.40.10 47 131 3.2E-8 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_3869 36e459cfbe5aec4ee2042e9ef9651a90 247 SUPERFAMILY SSF49354 43 157 6.98E-16 T 12-10-2018 IPR008962 PapD-like superfamily YPK_3374 d08a5374d6263e7d0df7e51e83c9c83b 187 Pfam PF02631 RecX family 72 183 1.1E-31 T 12-10-2018 IPR003783 Regulatory protein RecX GO:0006282 YPK_3374 d08a5374d6263e7d0df7e51e83c9c83b 187 Gene3D G3DSA:1.10.10.10 2 90 5.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3374 d08a5374d6263e7d0df7e51e83c9c83b 187 Hamap MF_01114 Regulatory protein RecX [recX]. 2 187 15.055 T 12-10-2018 IPR003783 Regulatory protein RecX GO:0006282 YPK_3374 d08a5374d6263e7d0df7e51e83c9c83b 187 Gene3D G3DSA:1.10.10.10 137 186 1.0E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3374 d08a5374d6263e7d0df7e51e83c9c83b 187 Gene3D G3DSA:1.10.10.10 91 135 2.2E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1399 32f5eadcd6e012e031a05449c73e3cd9 299 Pfam PF04261 Dyp-type peroxidase family 5 294 1.2E-92 T 12-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 YPK_1399 32f5eadcd6e012e031a05449c73e3cd9 299 SUPERFAMILY SSF54909 1 297 3.93E-91 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_1399 32f5eadcd6e012e031a05449c73e3cd9 299 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 296 1.2E-85 T 12-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 YPK_4045 b09ce7dd2970dd1d9f8636616b13281b 455 Pfam PF00419 Fimbrial protein 276 455 3.0E-29 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_4045 b09ce7dd2970dd1d9f8636616b13281b 455 PIRSF PIRSF029766 30 455 8.7E-186 T 12-10-2018 IPR011228 Uncharacterised conserved protein UCP029766 YPK_4045 b09ce7dd2970dd1d9f8636616b13281b 455 SUPERFAMILY SSF49401 285 453 5.97E-11 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_4045 b09ce7dd2970dd1d9f8636616b13281b 455 Gene3D G3DSA:2.60.40.1090 283 453 8.0E-10 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_3266 4f8560ce21b90ae32af6eb37391af1a4 202 Hamap MF_01950 Acyl carrier protein phosphodiesterase [acpH]. 10 202 58.075 T 12-10-2018 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 YPK_3266 4f8560ce21b90ae32af6eb37391af1a4 202 Pfam PF04336 Acyl carrier protein phosphodiesterase 90 194 5.6E-31 T 12-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 YPK_3266 4f8560ce21b90ae32af6eb37391af1a4 202 PIRSF PIRSF011489 10 202 3.6E-78 T 12-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 YPK_1053 8aa146c21569963cc775be6e9d6fe2c9 131 Pfam PF04241 Protein of unknown function (DUF423) 20 106 3.7E-23 T 12-10-2018 IPR006696 Protein of unknown function DUF423 YPK_2841 129efe2f7af4ae59eb266e662ea5ceb5 384 SUPERFAMILY SSF103473 22 378 4.19E-35 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2841 129efe2f7af4ae59eb266e662ea5ceb5 384 Gene3D G3DSA:1.20.1250.20 18 189 1.8E-13 T 12-10-2018 YPK_2841 129efe2f7af4ae59eb266e662ea5ceb5 384 Gene3D G3DSA:1.20.1250.20 200 382 2.3E-20 T 12-10-2018 YPK_2841 129efe2f7af4ae59eb266e662ea5ceb5 384 Pfam PF07690 Major Facilitator Superfamily 22 324 6.9E-15 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_2928 1d2ae749819f3b662061babed830f7f2 245 Gene3D G3DSA:3.40.50.300 7 235 1.1E-69 T 12-10-2018 YPK_2928 1d2ae749819f3b662061babed830f7f2 245 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 11 181 3.1E-60 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YPK_2928 1d2ae749819f3b662061babed830f7f2 245 SUPERFAMILY SSF52540 8 218 2.13E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2928 1d2ae749819f3b662061babed830f7f2 245 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 7 216 30.042 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YPK_2928 1d2ae749819f3b662061babed830f7f2 245 Pfam PF13500 AAA domain 10 216 3.2E-35 T 12-10-2018 YPK_2928 1d2ae749819f3b662061babed830f7f2 245 PIRSF PIRSF006755 6 235 1.5E-83 T 12-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 Gene3D G3DSA:3.10.580.10 175 301 2.3E-40 T 12-10-2018 YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 SMART SM00924 75 178 3.4E-31 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 Pfam PF03448 MgtE intracellular N domain 75 175 6.3E-23 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 TIGRFAM TIGR00400 mgtE: magnesium transporter 63 490 1.8E-77 T 12-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 SUPERFAMILY SSF54631 177 316 1.3E-24 T 12-10-2018 YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 SUPERFAMILY SSF158791 57 173 1.26E-22 T 12-10-2018 YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 Gene3D G3DSA:1.10.357.20 317 491 2.8E-47 T 12-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 Pfam PF01769 Divalent cation transporter 362 483 1.1E-23 T 12-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 SUPERFAMILY SSF161093 319 490 1.28E-47 T 12-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 Gene3D G3DSA:1.25.60.10 50 173 8.1E-16 T 12-10-2018 IPR038076 MgtE, N-terminal domain superfamily YPK_1341 370f2351a8f3fe8206c61b7187c3b58e 491 Pfam PF00571 CBS domain 242 296 4.9E-5 T 12-10-2018 IPR000644 CBS domain YPK_3848 b471ef64c8e5b68a5539963798a7e40b 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 374 5.6E-117 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 YPK_3848 b471ef64c8e5b68a5539963798a7e40b 382 Gene3D G3DSA:1.20.1090.10 184 382 7.3E-69 T 12-10-2018 YPK_3848 b471ef64c8e5b68a5539963798a7e40b 382 Gene3D G3DSA:3.40.50.1970 1 183 1.7E-52 T 12-10-2018 YPK_3848 b471ef64c8e5b68a5539963798a7e40b 382 SUPERFAMILY SSF56796 3 380 8.5E-122 T 12-10-2018 YPK_3848 b471ef64c8e5b68a5539963798a7e40b 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YPK_3848 b471ef64c8e5b68a5539963798a7e40b 382 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 2 378 1.1E-171 T 12-10-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 YPK_3848 b471ef64c8e5b68a5539963798a7e40b 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 YPK_2164 b8b12049734f7e950c0c0409739d07e3 186 Gene3D G3DSA:1.10.3480.10 1 183 7.8E-33 T 12-10-2018 YPK_2164 b8b12049734f7e950c0c0409739d07e3 186 Pfam PF02613 Nitrate reductase delta subunit 37 147 2.7E-14 T 12-10-2018 IPR020945 DMSO/Nitrate reductase chaperone YPK_2164 b8b12049734f7e950c0c0409739d07e3 186 SUPERFAMILY SSF89155 2 180 1.11E-47 T 12-10-2018 IPR036411 TorD-like superfamily YPK_2164 b8b12049734f7e950c0c0409739d07e3 186 PIRSF PIRSF004690 1 184 3.9E-62 T 12-10-2018 IPR026269 Tat proofreading chaperone DmsD-type YPK_3366 f196abcf943032a8dfa2bd4434bb96d8 263 Pfam PF01578 Cytochrome C assembly protein 37 261 7.1E-42 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 YPK_2352 676da0328a6c703b0bde9edaa217303a 364 Pfam PF05954 Phage late control gene D protein (GPD) 87 346 4.2E-32 T 12-10-2018 YPK_2352 676da0328a6c703b0bde9edaa217303a 364 SUPERFAMILY SSF69279 11 184 2.83E-26 T 12-10-2018 YPK_2937 ac4de76645876135c98894a466816851 259 Gene3D G3DSA:3.40.190.10 32 256 4.8E-86 T 12-10-2018 YPK_2937 ac4de76645876135c98894a466816851 259 PIRSF PIRSF004846 2 259 1.4E-77 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 YPK_2937 ac4de76645876135c98894a466816851 259 Pfam PF13531 Bacterial extracellular solute-binding protein 31 256 7.4E-46 T 12-10-2018 YPK_2937 ac4de76645876135c98894a466816851 259 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 36 255 1.7E-79 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 YPK_2937 ac4de76645876135c98894a466816851 259 SUPERFAMILY SSF53850 29 258 1.14E-68 T 12-10-2018 YPK_2937 ac4de76645876135c98894a466816851 259 Gene3D G3DSA:3.40.190.10 109 220 4.8E-86 T 12-10-2018 YPK_0243 67628836043fb0915f642d65e2a38519 513 Gene3D G3DSA:3.40.50.300 203 383 1.9E-19 T 12-10-2018 YPK_0243 67628836043fb0915f642d65e2a38519 513 Pfam PF05872 Bacterial protein of unknown function (DUF853) 17 513 1.5E-234 T 12-10-2018 IPR033186 Helicase HerA-like C-terminal YPK_0243 67628836043fb0915f642d65e2a38519 513 Gene3D G3DSA:3.40.50.300 6 149 3.7E-10 T 12-10-2018 YPK_0243 67628836043fb0915f642d65e2a38519 513 SUPERFAMILY SSF52540 8 377 3.26E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1490 fa4cdcfdc6103e9725aef29d85f256b0 159 Pfam PF04965 Gene 25-like lysozyme 36 136 1.3E-16 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_1490 fa4cdcfdc6103e9725aef29d85f256b0 159 SUPERFAMILY SSF160719 72 144 1.18E-10 T 12-10-2018 YPK_0164 ad401ba1a963b57f1984f4d6a7a1da9a 233 SUPERFAMILY SSF53271 46 231 1.31E-33 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like YPK_0164 ad401ba1a963b57f1984f4d6a7a1da9a 233 Gene3D G3DSA:3.40.50.2020 110 232 8.4E-17 T 12-10-2018 YPK_0164 ad401ba1a963b57f1984f4d6a7a1da9a 233 Pfam PF00156 Phosphoribosyl transferase domain 143 229 3.1E-7 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 YPK_2027 e9e6fbc6bf6196254476f6706f1be446 103 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 86 3.4E-19 T 12-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 YPK_2027 e9e6fbc6bf6196254476f6706f1be446 103 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 21.939 T 12-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 YPK_2333 03619c133ed7e1af1e205cfeea5bd119 128 Pfam PF05106 Phage holin family (Lysis protein S) 5 120 4.3E-16 T 12-10-2018 IPR006481 Bacteriophage lambda, GpS, holin YPK_3360 d7311382eecbf0a3acc726fb46f771de 255 Pfam PF04338 Protein of unknown function, DUF481 50 254 2.0E-56 T 12-10-2018 IPR007433 Protein of unknown function DUF481 YPK_1213 9fd69f77cfd908bb530985764fc17cfa 70 Gene3D G3DSA:3.40.210.30 10 66 9.4E-7 T 12-10-2018 YPK_1213 9fd69f77cfd908bb530985764fc17cfa 70 Pfam PF06044 Dam-replacing family 14 59 6.8E-7 T 12-10-2018 IPR010324 Dam-replacing YPK_1731 f1e451617d5ddd841bf8ac2dc4d5acb3 67 Pfam PF14001 YdfZ protein 3 66 8.3E-34 T 12-10-2018 IPR017704 Putative selenium-binding protein YdfZ YPK_1731 f1e451617d5ddd841bf8ac2dc4d5acb3 67 TIGRFAM TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ 2 66 1.1E-36 T 12-10-2018 IPR017704 Putative selenium-binding protein YdfZ YPK_4029 10b058631ec3a3f651cd1198778c708f 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 341 3.1E-159 T 12-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 YPK_4029 10b058631ec3a3f651cd1198778c708f 355 Gene3D G3DSA:3.40.50.720 3 326 9.9E-138 T 12-10-2018 YPK_4029 10b058631ec3a3f651cd1198778c708f 355 Gene3D G3DSA:3.90.25.10 202 335 9.9E-138 T 12-10-2018 YPK_4029 10b058631ec3a3f651cd1198778c708f 355 SUPERFAMILY SSF51735 3 339 2.49E-93 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_4029 10b058631ec3a3f651cd1198778c708f 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 327 7.4E-98 T 12-10-2018 IPR016040 NAD(P)-binding domain YPK_3995 e71ba73355ae0544715f344a25dfdf3b 331 Gene3D G3DSA:3.40.50.1820 21 329 3.5E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3995 e71ba73355ae0544715f344a25dfdf3b 331 Pfam PF12146 Serine aminopeptidase, S33 48 308 1.1E-54 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 YPK_3995 e71ba73355ae0544715f344a25dfdf3b 331 SUPERFAMILY SSF53474 30 323 5.21E-36 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3652 d0e075ad9c9c429114ebad1897a512f2 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 307 6.5E-45 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_2452 98895e449c1d7d6e84e03baf6ac73c2c 165 SMART SM00903 15 162 3.7E-49 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 YPK_2452 98895e449c1d7d6e84e03baf6ac73c2c 165 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 11 164 1.1E-75 T 12-10-2018 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 KEGG: 00740+1.5.1.36 YPK_2452 98895e449c1d7d6e84e03baf6ac73c2c 165 SUPERFAMILY SSF50475 11 162 5.89E-44 T 12-10-2018 YPK_2452 98895e449c1d7d6e84e03baf6ac73c2c 165 Gene3D G3DSA:2.30.110.10 1 164 2.9E-36 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 YPK_2452 98895e449c1d7d6e84e03baf6ac73c2c 165 Pfam PF01613 Flavin reductase like domain 15 163 3.0E-24 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 YPK_1858 e16837be7431cdd9959a17109a6c478f 383 Gene3D G3DSA:3.40.50.150 117 376 6.2E-99 T 12-10-2018 YPK_1858 e16837be7431cdd9959a17109a6c478f 383 PIRSF PIRSF003085 6 379 2.7E-124 T 12-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 YPK_1858 e16837be7431cdd9959a17109a6c478f 383 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 4.4E-101 T 12-10-2018 YPK_1858 e16837be7431cdd9959a17109a6c478f 383 SUPERFAMILY SSF53335 117 370 1.62E-76 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0785 076e0e0ebf8dca9ecbc0aa07446cbfe3 316 Pfam PF13523 Acetyltransferase (GNAT) domain 151 295 1.4E-49 T 12-10-2018 YPK_0785 076e0e0ebf8dca9ecbc0aa07446cbfe3 316 SMART SM01006 147 194 6.8E-17 T 12-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain YPK_0785 076e0e0ebf8dca9ecbc0aa07446cbfe3 316 Gene3D G3DSA:3.40.630.30 103 309 4.5E-60 T 12-10-2018 YPK_0785 076e0e0ebf8dca9ecbc0aa07446cbfe3 316 SUPERFAMILY SSF55729 114 307 4.64E-55 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_1058 3a058a8a7576d4542c8b65993bc223e1 183 Pfam PF07348 Syd protein (SUKH-2) 7 179 1.8E-72 T 12-10-2018 IPR009948 Syd GO:0009898 YPK_1058 3a058a8a7576d4542c8b65993bc223e1 183 Gene3D G3DSA:3.40.1580.20 1 181 4.8E-68 T 12-10-2018 IPR038228 Syd superfamily YPK_1058 3a058a8a7576d4542c8b65993bc223e1 183 Hamap MF_01104 Protein Syd [syd]. 3 181 37.264 T 12-10-2018 IPR009948 Syd GO:0009898 YPK_3380 2e707a71d1561ba06485843f0507c084 474 Pfam PF02952 L-fucose isomerase, C-terminal domain 343 471 2.7E-38 T 12-10-2018 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 YPK_3380 2e707a71d1561ba06485843f0507c084 474 SUPERFAMILY SSF53743 6 325 2.75E-65 T 12-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 YPK_1606 7f3ec854cdb6e7a7b992eac27c39ae50 174 Gene3D G3DSA:2.40.160.20 25 174 7.6E-48 T 12-10-2018 YPK_1606 7f3ec854cdb6e7a7b992eac27c39ae50 174 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 47 55 - T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1606 7f3ec854cdb6e7a7b992eac27c39ae50 174 Pfam PF13505 Outer membrane protein beta-barrel domain 9 174 7.3E-23 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel YPK_1606 7f3ec854cdb6e7a7b992eac27c39ae50 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 86 109 1.0E-35 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1606 7f3ec854cdb6e7a7b992eac27c39ae50 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 162 173 1.0E-35 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1606 7f3ec854cdb6e7a7b992eac27c39ae50 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 46 58 1.0E-35 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1606 7f3ec854cdb6e7a7b992eac27c39ae50 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 135 156 1.0E-35 T 12-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 YPK_1606 7f3ec854cdb6e7a7b992eac27c39ae50 174 SUPERFAMILY SSF56925 28 174 2.88E-30 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_1798 e2afff79b72f8a2c9235b929d37cc9ff 430 SUPERFAMILY SSF53850 26 427 9.32E-64 T 12-10-2018 YPK_1798 e2afff79b72f8a2c9235b929d37cc9ff 430 Gene3D G3DSA:3.40.190.10 30 373 4.4E-162 T 12-10-2018 YPK_1798 e2afff79b72f8a2c9235b929d37cc9ff 430 Gene3D G3DSA:3.40.190.10 139 415 4.4E-162 T 12-10-2018 YPK_1798 e2afff79b72f8a2c9235b929d37cc9ff 430 Pfam PF01547 Bacterial extracellular solute-binding protein 47 333 7.4E-25 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_0795 a2e323094cdc2faa586e3804eb9fbe17 87 Pfam PF03811 InsA N-terminal domain 1 35 5.4E-17 T 12-10-2018 IPR003220 InsA N-terminal domain GO:0006313 YPK_0795 a2e323094cdc2faa586e3804eb9fbe17 87 Pfam PF12759 InsA C-terminal domain 42 86 1.5E-25 T 12-10-2018 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain YPK_3660 e2b54a51f5784d4bb48a2d948c65dd32 114 Gene3D G3DSA:3.40.50.2300 2 114 2.4E-39 T 12-10-2018 YPK_3660 e2b54a51f5784d4bb48a2d948c65dd32 114 SUPERFAMILY SSF52794 4 98 1.92E-28 T 12-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YPK_3660 e2b54a51f5784d4bb48a2d948c65dd32 114 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 7 97 3.4E-16 T 12-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YPK_3660 e2b54a51f5784d4bb48a2d948c65dd32 114 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 6 86 4.1E-25 T 12-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 YPK_0103 5f2c4d5aba54ea6f367abf47af662ffa 281 Pfam PF00563 EAL domain 50 266 5.0E-27 T 12-10-2018 IPR001633 EAL domain YPK_0103 5f2c4d5aba54ea6f367abf47af662ffa 281 Gene3D G3DSA:3.20.20.450 44 276 2.0E-34 T 12-10-2018 IPR035919 EAL domain superfamily YPK_0103 5f2c4d5aba54ea6f367abf47af662ffa 281 SMART SM00052 26 271 3.5E-11 T 12-10-2018 IPR001633 EAL domain YPK_0103 5f2c4d5aba54ea6f367abf47af662ffa 281 SUPERFAMILY SSF141868 49 274 1.23E-28 T 12-10-2018 IPR035919 EAL domain superfamily YPK_2772 502e6d84960d43f074fc78f89ec1ba03 380 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 208 355 4.8E-9 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 YPK_2772 502e6d84960d43f074fc78f89ec1ba03 380 SUPERFAMILY SSF56529 155 361 4.19E-25 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_2772 502e6d84960d43f074fc78f89ec1ba03 380 Gene3D G3DSA:3.90.850.10 135 359 2.4E-40 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_0646 b59d4a901e6322f43b5056d27fb2dbf7 416 Gene3D G3DSA:1.20.1740.10 4 415 2.9E-47 T 12-10-2018 YPK_0646 b59d4a901e6322f43b5056d27fb2dbf7 416 Pfam PF13520 Amino acid permease 8 412 5.2E-31 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_0646 b59d4a901e6322f43b5056d27fb2dbf7 416 PIRSF PIRSF006060 1 414 3.4E-50 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_1407 fbbe6b4f5f76eaf162d55ae176dce02b 510 Pfam PF07690 Major Facilitator Superfamily 39 308 6.0E-30 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_1407 fbbe6b4f5f76eaf162d55ae176dce02b 510 Hamap MF_01238 Sialic acid transporter NanT [nanT]. 15 510 50.554 T 12-10-2018 IPR004742 Sialic acid transporter GO:0015136|GO:0015739|GO:0016021 YPK_1407 fbbe6b4f5f76eaf162d55ae176dce02b 510 SUPERFAMILY SSF103473 20 469 7.85E-68 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1407 fbbe6b4f5f76eaf162d55ae176dce02b 510 Gene3D G3DSA:1.20.1250.20 25 231 4.0E-39 T 12-10-2018 YPK_1407 fbbe6b4f5f76eaf162d55ae176dce02b 510 Gene3D G3DSA:1.20.1250.20 290 473 5.4E-21 T 12-10-2018 YPK_3703 021fb8e4bf623bd8a980fd8a3c6b16d3 212 Gene3D G3DSA:3.40.50.720 1 210 2.8E-49 T 12-10-2018 YPK_3703 021fb8e4bf623bd8a980fd8a3c6b16d3 212 SMART SM00859 3 101 0.0054 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 YPK_3703 021fb8e4bf623bd8a980fd8a3c6b16d3 212 SUPERFAMILY SSF51735 1 199 5.96E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2782 f001e2a207e31945212ebbf250c49a57 327 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 240 320 1.8E-5 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YPK_2782 f001e2a207e31945212ebbf250c49a57 327 SUPERFAMILY SSF52540 6 167 3.15E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2782 f001e2a207e31945212ebbf250c49a57 327 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 170 2.5E-39 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain YPK_2782 f001e2a207e31945212ebbf250c49a57 327 Gene3D G3DSA:3.40.50.300 2 194 1.1E-44 T 12-10-2018 YPK_2782 f001e2a207e31945212ebbf250c49a57 327 SMART SM00833 239 322 0.0081 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YPK_2717 e4e2d6ab49d518d1f2a562e6987e3f72 265 Gene3D G3DSA:3.40.50.150 11 249 1.7E-32 T 12-10-2018 YPK_2717 e4e2d6ab49d518d1f2a562e6987e3f72 265 SUPERFAMILY SSF51735 113 219 6.96E-13 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2717 e4e2d6ab49d518d1f2a562e6987e3f72 265 Pfam PF03059 Nicotianamine synthase protein 8 229 1.6E-12 T 12-10-2018 IPR004298 Nicotianamine synthase GO:0030410|GO:0030418 MetaCyc: PWY-5912|MetaCyc: PWY-5957 YPK_1227 6973688c95f55eb5de219edcdc913362 377 Pfam PF09950 Uncharacterized protein conserved in bacteria (DUF2184) 126 317 1.1E-14 T 12-10-2018 IPR020049 Protein of unknown function DUF2184 YPK_1518 d387f0dfcbb6edfdcd6243c7249ee153 92 Pfam PF08891 YfcL protein 4 86 3.1E-37 T 12-10-2018 IPR014987 Uncharacterised protein family YfcL YPK_3157 68da37b54bfe1a65f8d13c1e9629e990 809 Pfam PF02687 FtsX-like permease family 714 800 8.6E-7 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YPK_2228 ad12d413c72ddfdb134375a1cd1032e7 350 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 4 343 2.4E-146 T 12-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 YPK_2228 ad12d413c72ddfdb134375a1cd1032e7 350 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 4 343 4.0E-156 T 12-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 YPK_2228 ad12d413c72ddfdb134375a1cd1032e7 350 Gene3D G3DSA:3.40.630.30 1 272 7.3E-121 T 12-10-2018 YPK_2228 ad12d413c72ddfdb134375a1cd1032e7 350 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 341 1.5E-143 T 12-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 YPK_2228 ad12d413c72ddfdb134375a1cd1032e7 350 Hamap MF_01171 Arginine N-succinyltransferase [astA]. 1 349 74.502 T 12-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 YPK_2228 ad12d413c72ddfdb134375a1cd1032e7 350 SUPERFAMILY SSF55729 1 343 1.91E-132 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_2228 ad12d413c72ddfdb134375a1cd1032e7 350 Gene3D G3DSA:2.40.40.20 273 344 3.4E-11 T 12-10-2018 YPK_3890 e65cdfcf7bb3517903ed531e72e8a32e 345 SUPERFAMILY SSF144064 4 339 1.28E-132 T 12-10-2018 YPK_3890 e65cdfcf7bb3517903ed531e72e8a32e 345 Gene3D G3DSA:3.40.1570.10 13 281 5.3E-136 T 12-10-2018 YPK_3890 e65cdfcf7bb3517903ed531e72e8a32e 345 Gene3D G3DSA:3.40.1570.10 82 332 5.3E-136 T 12-10-2018 YPK_3890 e65cdfcf7bb3517903ed531e72e8a32e 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 207 338 3.3E-40 T 12-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 YPK_3890 e65cdfcf7bb3517903ed531e72e8a32e 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 29 157 5.3E-44 T 12-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 YPK_2018 79410f6b98172dd158f05ac0ecfbe802 101 Pfam PF04328 Selenoprotein, putative 38 101 1.3E-24 T 12-10-2018 IPR007423 Selenoprotein, putative YPK_2556 d92213fdbe5f9c8acacdeffe8d9fa797 358 Pfam PF13407 Periplasmic binding protein domain 55 301 1.1E-25 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_2556 d92213fdbe5f9c8acacdeffe8d9fa797 358 Gene3D G3DSA:3.40.50.2300 144 312 2.1E-66 T 12-10-2018 YPK_2556 d92213fdbe5f9c8acacdeffe8d9fa797 358 SUPERFAMILY SSF53822 40 305 2.94E-38 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2556 d92213fdbe5f9c8acacdeffe8d9fa797 358 Gene3D G3DSA:3.40.50.2300 43 309 2.1E-66 T 12-10-2018 YPK_2583 57d68df2b8dda60ed38b507e7129ff12 455 Pfam PF06812 ImpA, N-terminal, type VI secretion system 11 112 6.1E-20 T 12-10-2018 IPR010657 ImpA, N-terminal YPK_2583 57d68df2b8dda60ed38b507e7129ff12 455 Pfam PF12486 Type VI secretion system, EvfB, or VasL 304 448 1.3E-50 T 12-10-2018 IPR021069 ImpA, C-terminal YPK_0557 ae4821833333181d0aa87d098c99ab84 176 PIRSF PIRSF011443 1 176 2.4E-60 T 12-10-2018 IPR026267 Inner membrane protein YgjV YPK_0557 ae4821833333181d0aa87d098c99ab84 176 Pfam PF10688 Bacterial inner membrane protein 5 162 7.9E-53 T 12-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV YPK_3819 0d62cd51511f037e342f96bb146a468c 334 SUPERFAMILY SSF102114 94 316 7.98E-26 T 12-10-2018 YPK_3819 0d62cd51511f037e342f96bb146a468c 334 Gene3D G3DSA:3.20.20.70 43 326 3.2E-90 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_3819 0d62cd51511f037e342f96bb146a468c 334 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 7 327 7.5E-157 T 12-10-2018 IPR022462 Lysine-2,3-aminomutase-like YPK_3819 0d62cd51511f037e342f96bb146a468c 334 Pfam PF04055 Radical SAM superfamily 110 191 1.9E-8 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_3819 0d62cd51511f037e342f96bb146a468c 334 PIRSF PIRSF004911 2 334 3.2E-117 T 12-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YPK_3819 0d62cd51511f037e342f96bb146a468c 334 TIGRFAM TIGR00238 TIGR00238: KamA family protein 5 320 5.8E-132 T 12-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase YPK_3819 0d62cd51511f037e342f96bb146a468c 334 Pfam PF13353 4Fe-4S single cluster domain 103 174 3.6E-6 T 12-10-2018 YPK_1418 c628b5d42ba610fc64de443d99bf781d 406 Pfam PF01321 Creatinase/Prolidase N-terminal domain 14 178 3.1E-17 T 12-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 YPK_1418 c628b5d42ba610fc64de443d99bf781d 406 Gene3D G3DSA:3.40.350.10 13 177 2.2E-10 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_1418 c628b5d42ba610fc64de443d99bf781d 406 Pfam PF00557 Metallopeptidase family M24 186 388 1.0E-34 T 12-10-2018 IPR000994 Peptidase M24 YPK_1418 c628b5d42ba610fc64de443d99bf781d 406 Gene3D G3DSA:3.90.230.10 178 405 4.5E-49 T 12-10-2018 YPK_1418 c628b5d42ba610fc64de443d99bf781d 406 SUPERFAMILY SSF55920 175 403 6.41E-49 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like YPK_1418 c628b5d42ba610fc64de443d99bf781d 406 SUPERFAMILY SSF53092 6 176 1.01E-14 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YPK_1546 b531f12012cd28744158f453e97542d4 418 Pfam PF03611 PTS system sugar-specific permease component 11 405 4.6E-148 T 12-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 YPK_1119 af45e980ff3a1632573fc7a9fed53953 78 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 73 6.4E-35 T 12-10-2018 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 YPK_1119 af45e980ff3a1632573fc7a9fed53953 78 Gene3D G3DSA:3.40.30.10 1 77 1.0E-27 T 12-10-2018 YPK_1119 af45e980ff3a1632573fc7a9fed53953 78 Pfam PF00462 Glutaredoxin 3 61 7.3E-15 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 YPK_1119 af45e980ff3a1632573fc7a9fed53953 78 SUPERFAMILY SSF52833 1 72 3.43E-19 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_0656 4d02a3d3b4b4bbdbef1812f1fe0b0b59 141 Pfam PF06853 Protein of unknown function (DUF1249) 22 135 7.0E-41 T 12-10-2018 IPR009659 Protein of unknown function DUF1249 YPK_3756 69554d2aa512d229762d0879d739589d 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 2.1E-43 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3756 69554d2aa512d229762d0879d739589d 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 12-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_3756 69554d2aa512d229762d0879d739589d 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-18 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3756 69554d2aa512d229762d0879d739589d 85 SUPERFAMILY SSF110324 2 79 1.88E-34 T 12-10-2018 YPK_3756 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.7E-39 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3756 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.7E-39 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3756 69554d2aa512d229762d0879d739589d 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.7E-39 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3756 69554d2aa512d229762d0879d739589d 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.288 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3756 69554d2aa512d229762d0879d739589d 85 Gene3D G3DSA:2.40.50.100 21 85 1.1E-30 T 12-10-2018 YPK_3756 69554d2aa512d229762d0879d739589d 85 Pfam PF01016 Ribosomal L27 protein 2 82 4.0E-39 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0783 8a7d782243eb942c49673f0859e7773b 442 SUPERFAMILY SSF51905 1 228 5.95E-18 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0783 8a7d782243eb942c49673f0859e7773b 442 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 3 333 7.1E-110 T 12-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase YPK_0783 8a7d782243eb942c49673f0859e7773b 442 Gene3D G3DSA:3.50.50.60 1 421 1.4E-112 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0783 8a7d782243eb942c49673f0859e7773b 442 SUPERFAMILY SSF51905 132 401 6.15E-5 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 PIRSF PIRSF000398 4 277 6.7E-62 T 12-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 13 29 2.6E-16 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 178 190 2.6E-16 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 34 48 2.6E-16 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 53 66 2.6E-16 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 13 250 1.4E-60 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 Gene3D G3DSA:1.10.1020.10 60 159 7.1E-75 T 12-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 SUPERFAMILY SSF53335 7 271 4.71E-71 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 TIGRFAM TIGR00571 dam: DNA adenine methylase 8 270 1.1E-85 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 Gene3D G3DSA:3.40.50.150 11 240 7.1E-75 T 12-10-2018 YPK_0888 3b405239771caa8bf4d9f5fb9dea0650 290 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 181 187 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 YPK_3330 3821c76837d64381888c99b5d312403b 277 SUPERFAMILY SSF53697 94 253 5.12E-16 T 12-10-2018 YPK_3330 3821c76837d64381888c99b5d312403b 277 Gene3D G3DSA:1.10.10.10 1 76 4.5E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_3330 3821c76837d64381888c99b5d312403b 277 Gene3D G3DSA:3.40.50.10490 90 274 1.1E-29 T 12-10-2018 YPK_3330 3821c76837d64381888c99b5d312403b 277 SUPERFAMILY SSF46689 2 79 1.29E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3330 3821c76837d64381888c99b5d312403b 277 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 71 3.6E-13 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 YPK_3330 3821c76837d64381888c99b5d312403b 277 Pfam PF01380 SIS domain 124 247 3.4E-14 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_1401 0af23eb29971262447c49f894b076fdb 233 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 33 224 9.5E-82 T 12-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 YPK_1401 0af23eb29971262447c49f894b076fdb 233 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 9 223 38.368 T 12-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 YPK_1401 0af23eb29971262447c49f894b076fdb 233 SUPERFAMILY SSF51366 11 222 1.2E-53 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YPK_1401 0af23eb29971262447c49f894b076fdb 233 Gene3D G3DSA:3.20.20.70 1 227 1.0E-86 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_0536 0e001aa0f78fea1d46e557016323d82a 191 SMART SM00749 129 190 3.1E-4 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YPK_0536 0e001aa0f78fea1d46e557016323d82a 191 SMART SM00749 51 114 2.0E-8 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YPK_0536 0e001aa0f78fea1d46e557016323d82a 191 Pfam PF04972 BON domain 46 114 2.0E-13 T 12-10-2018 IPR007055 BON domain YPK_0536 0e001aa0f78fea1d46e557016323d82a 191 Pfam PF04972 BON domain 125 190 6.1E-18 T 12-10-2018 IPR007055 BON domain YPK_0753 f4d99aa3c937229cf137b37e0c0c1a64 356 Gene3D G3DSA:3.40.50.720 3 150 4.0E-15 T 12-10-2018 YPK_0753 f4d99aa3c937229cf137b37e0c0c1a64 356 SUPERFAMILY SSF51735 4 137 1.46E-18 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_0753 f4d99aa3c937229cf137b37e0c0c1a64 356 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 80 4.0E-9 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_1317 4157452d4010c9824a198a815013bdcd 154 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 12 153 2.0E-62 T 12-10-2018 IPR010351 Protein of unknown function DUF943 YPK_0045 03bc61a3d7bfe787bc6531cfab508e4b 182 Pfam PF13988 Protein of unknown function (DUF4225) 1 150 4.1E-54 T 12-10-2018 IPR025320 Protein of unknown function DUF4225 YPK_0215 43c9af1d21114153a1c18ef731ce4f74 296 Gene3D G3DSA:3.40.50.300 75 204 1.0E-7 T 12-10-2018 YPK_0215 43c9af1d21114153a1c18ef731ce4f74 296 Gene3D G3DSA:1.10.260.40 1 59 7.7E-12 T 12-10-2018 YPK_0215 43c9af1d21114153a1c18ef731ce4f74 296 SUPERFAMILY SSF47413 2 45 1.49E-6 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0215 43c9af1d21114153a1c18ef731ce4f74 296 Pfam PF13401 AAA domain 93 201 3.9E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_0215 43c9af1d21114153a1c18ef731ce4f74 296 SUPERFAMILY SSF52540 89 279 7.39E-14 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_1009 b348aa2a69efd7bc881449796fab9f39 96 Pfam PF02501 Type II secretion system (T2SS), protein I 14 91 3.0E-17 T 12-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 YPK_1009 b348aa2a69efd7bc881449796fab9f39 96 Gene3D G3DSA:3.30.1300.30 4 91 2.0E-17 T 12-10-2018 YPK_1009 b348aa2a69efd7bc881449796fab9f39 96 SUPERFAMILY SSF54523 12 92 4.94E-20 T 12-10-2018 YPK_1450 17970932b5e00bbb5de46b35b02644e0 118 PIRSF PIRSF020555 1 118 3.1E-57 T 12-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats YPK_1450 17970932b5e00bbb5de46b35b02644e0 118 Pfam PF16068 Domain of unknown function (DUF4810) 26 109 2.1E-34 T 12-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats YPK_1957 25c8a327f2b27dcea5dfbf051d0a830e 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 264 4.2E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1957 25c8a327f2b27dcea5dfbf051d0a830e 273 SUPERFAMILY SSF161098 71 259 1.7E-35 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1957 25c8a327f2b27dcea5dfbf051d0a830e 273 Gene3D G3DSA:1.10.3720.10 71 266 5.8E-30 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1483 d403c294ac943a8c9af4f669877573e1 449 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 4 447 3.3E-138 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YPK_1483 d403c294ac943a8c9af4f669877573e1 449 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 446 2.6E-140 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YPK_1363 e19924214bc323652d48252fb46ac976 352 Gene3D G3DSA:3.30.310.170 227 350 2.3E-49 T 12-10-2018 YPK_1363 e19924214bc323652d48252fb46ac976 352 Pfam PF06804 NlpB/DapX lipoprotein 40 343 1.6E-111 T 12-10-2018 IPR010653 NlpB/DapX lipoprotein YPK_1363 e19924214bc323652d48252fb46ac976 352 PIRSF PIRSF026343 9 345 1.6E-113 T 12-10-2018 IPR014524 Outer membrane protein assembly factor BamC YPK_1363 e19924214bc323652d48252fb46ac976 352 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 344 39.955 T 12-10-2018 IPR014524 Outer membrane protein assembly factor BamC YPK_1363 e19924214bc323652d48252fb46ac976 352 Gene3D G3DSA:3.30.530.50 101 213 1.5E-44 T 12-10-2018 YPK_3083 b8794ba45f25d6a802b8512c8b2fed9f 309 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 265 291 - T 12-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 YPK_3083 b8794ba45f25d6a802b8512c8b2fed9f 309 Pfam PF01148 Cytidylyltransferase family 43 307 2.8E-63 T 12-10-2018 YPK_3587 864cfccf212ab4a1d71b979a3aae1660 169 TIGRFAM TIGR00077 lspA: signal peptidase II 3 160 7.3E-51 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YPK_3587 864cfccf212ab4a1d71b979a3aae1660 169 Pfam PF01252 Signal peptidase (SPase) II 16 154 2.2E-37 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YPK_3587 864cfccf212ab4a1d71b979a3aae1660 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 1.6E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YPK_3587 864cfccf212ab4a1d71b979a3aae1660 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 1.6E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YPK_3587 864cfccf212ab4a1d71b979a3aae1660 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 1.6E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YPK_3587 864cfccf212ab4a1d71b979a3aae1660 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 17.049 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YPK_3587 864cfccf212ab4a1d71b979a3aae1660 169 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 YPK_2830 505afeecd78dd91db52c5cd8a21408ad 80 Gene3D G3DSA:3.30.910.10 1 79 3.8E-16 T 12-10-2018 IPR036687 DinI-like superfamily YPK_2830 505afeecd78dd91db52c5cd8a21408ad 80 Pfam PF06183 DinI-like family 17 76 7.9E-22 T 12-10-2018 IPR010391 DNA damage-inducible protein DinI-like YPK_2830 505afeecd78dd91db52c5cd8a21408ad 80 SUPERFAMILY SSF54857 1 78 1.28E-23 T 12-10-2018 IPR036687 DinI-like superfamily YPK_0482 575df0a3a1efd90128e0de1b3f9e487e 303 SUPERFAMILY SSF46785 3 109 3.01E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_0482 575df0a3a1efd90128e0de1b3f9e487e 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.2E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_0482 575df0a3a1efd90128e0de1b3f9e487e 303 SUPERFAMILY SSF53850 90 295 4.34E-40 T 12-10-2018 YPK_0482 575df0a3a1efd90128e0de1b3f9e487e 303 Pfam PF03466 LysR substrate binding domain 89 292 1.8E-39 T 12-10-2018 IPR005119 LysR, substrate-binding YPK_0482 575df0a3a1efd90128e0de1b3f9e487e 303 Gene3D G3DSA:3.40.190.290 91 293 4.0E-53 T 12-10-2018 YPK_0482 575df0a3a1efd90128e0de1b3f9e487e 303 Gene3D G3DSA:1.10.10.10 3 88 4.0E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2681 9c6849038d944de22a72d80203744284 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 5.4E-180 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YPK_2681 9c6849038d944de22a72d80203744284 430 Gene3D G3DSA:1.10.287.40 1 104 3.8E-19 T 12-10-2018 YPK_2681 9c6849038d944de22a72d80203744284 430 Gene3D G3DSA:3.30.930.10 105 430 7.8E-116 T 12-10-2018 YPK_2681 9c6849038d944de22a72d80203744284 430 SUPERFAMILY SSF55681 116 425 3.14E-100 T 12-10-2018 YPK_2681 9c6849038d944de22a72d80203744284 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 42.014 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YPK_2681 9c6849038d944de22a72d80203744284 430 SUPERFAMILY SSF46589 1 112 7.32E-31 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 YPK_2681 9c6849038d944de22a72d80203744284 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 6.9E-30 T 12-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 YPK_2681 9c6849038d944de22a72d80203744284 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 227 406 7.3E-36 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_2681 9c6849038d944de22a72d80203744284 430 PIRSF PIRSF001529 1 430 6.9E-183 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YPK_2681 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 322 335 8.3E-34 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YPK_2681 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 282 295 8.3E-34 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YPK_2681 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 339 355 8.3E-34 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YPK_2681 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 270 282 8.3E-34 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YPK_2681 9c6849038d944de22a72d80203744284 430 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 8.3E-34 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 YPK_1674 b55fa417400f894776178115b8a3742b 81 Pfam PF06183 DinI-like family 14 78 1.5E-29 T 12-10-2018 IPR010391 DNA damage-inducible protein DinI-like YPK_1674 b55fa417400f894776178115b8a3742b 81 SUPERFAMILY SSF54857 1 80 1.01E-29 T 12-10-2018 IPR036687 DinI-like superfamily YPK_1674 b55fa417400f894776178115b8a3742b 81 Gene3D G3DSA:3.30.910.10 1 81 5.6E-36 T 12-10-2018 IPR036687 DinI-like superfamily YPK_2605 d796f9caa36a7b0b02d9aeb24812e914 262 Gene3D G3DSA:3.40.50.720 1 250 5.7E-39 T 12-10-2018 YPK_2605 d796f9caa36a7b0b02d9aeb24812e914 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.0E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2605 d796f9caa36a7b0b02d9aeb24812e914 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.0E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2605 d796f9caa36a7b0b02d9aeb24812e914 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.0E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR YPK_2605 d796f9caa36a7b0b02d9aeb24812e914 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 241 2.1E-32 T 12-10-2018 YPK_2605 d796f9caa36a7b0b02d9aeb24812e914 262 SUPERFAMILY SSF51735 9 243 1.4E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2238 a51c4f757f1bc455297eb0382412670a 155 Pfam PF13994 PgaD-like protein 5 134 3.0E-37 T 12-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 YPK_2238 a51c4f757f1bc455297eb0382412670a 155 ProDom PD460230 MEMBRANE STORAGE INNER HAEMIN SYSTEM HMSS PGA BIOFILM PGAD TRANSMEMBRANE 1 137 2.0E-59 T 12-10-2018 YPK_2238 a51c4f757f1bc455297eb0382412670a 155 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 4 138 8.4E-40 T 12-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 YPK_1834 ba30c1ee193725f12721bd2c2c60b39a 301 Pfam PF01522 Polysaccharide deacetylase 17 170 2.5E-13 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 YPK_1834 ba30c1ee193725f12721bd2c2c60b39a 301 SUPERFAMILY SSF88713 15 267 4.45E-28 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YPK_1834 ba30c1ee193725f12721bd2c2c60b39a 301 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 296 64.661 T 12-10-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 YPK_1697 0ffc2e075bae30db81bb6b764206e217 129 Pfam PF07233 Protein of unknown function (DUF1425) 38 127 7.2E-26 T 12-10-2018 IPR010824 Protein of unknown function DUF1425 YPK_1697 0ffc2e075bae30db81bb6b764206e217 129 Gene3D G3DSA:2.60.40.3230 24 128 2.2E-20 T 12-10-2018 IPR038483 YcfL-like superfamily YPK_0580 0b90cfaab6951cc956719e6eb30cf4f0 44 Pfam PF14021 Tuberculosis necrotizing toxin 1 43 1.4E-9 T 12-10-2018 IPR025331 Tuberculosis necrotizing toxin KEGG: 00760+3.2.2.5 YPK_3574 723851f32c8dfcf1611ed30fd7f2aec6 125 SUPERFAMILY SSF110069 5 125 1.83E-46 T 12-10-2018 IPR036767 ApaG domain superfamily YPK_3574 723851f32c8dfcf1611ed30fd7f2aec6 125 Gene3D G3DSA:2.60.40.1470 1 125 6.4E-45 T 12-10-2018 IPR036767 ApaG domain superfamily YPK_3574 723851f32c8dfcf1611ed30fd7f2aec6 125 Pfam PF04379 ApaG domain 18 102 7.8E-33 T 12-10-2018 IPR007474 ApaG domain YPK_3574 723851f32c8dfcf1611ed30fd7f2aec6 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 31.51 T 12-10-2018 IPR023065 Uncharacterised protein family ApaG YPK_0231 754c939f3d92a6c590a72990464e1960 346 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 24 33 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_0231 754c939f3d92a6c590a72990464e1960 346 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 15 342 3.1E-117 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YPK_0231 754c939f3d92a6c590a72990464e1960 346 SUPERFAMILY SSF52374 17 342 7.24E-100 T 12-10-2018 YPK_0231 754c939f3d92a6c590a72990464e1960 346 Pfam PF00579 tRNA synthetases class I (W and Y) 15 297 2.8E-87 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_0231 754c939f3d92a6c590a72990464e1960 346 Gene3D G3DSA:1.10.240.10 198 310 8.8E-144 T 12-10-2018 YPK_0231 754c939f3d92a6c590a72990464e1960 346 Gene3D G3DSA:3.40.50.620 18 341 8.8E-144 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_0231 754c939f3d92a6c590a72990464e1960 346 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 15 343 42.767 T 12-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 YPK_0231 754c939f3d92a6c590a72990464e1960 346 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 28 44 2.9E-29 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YPK_0231 754c939f3d92a6c590a72990464e1960 346 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 207 217 2.9E-29 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YPK_0231 754c939f3d92a6c590a72990464e1960 346 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 154 175 2.9E-29 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YPK_0231 754c939f3d92a6c590a72990464e1960 346 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 78 97 2.9E-29 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 YPK_0188 f57a93832ba38c1c1488093af20156bf 407 SUPERFAMILY SSF69279 181 386 7.37E-49 T 12-10-2018 YPK_0188 f57a93832ba38c1c1488093af20156bf 407 PIRSF PIRSF004440 4 264 1.3E-37 T 12-10-2018 IPR026276 Baseplate protein GpP YPK_0188 f57a93832ba38c1c1488093af20156bf 407 PIRSF PIRSF004440 256 406 5.2E-10 T 12-10-2018 IPR026276 Baseplate protein GpP YPK_0188 f57a93832ba38c1c1488093af20156bf 407 SUPERFAMILY SSF69279 10 179 4.02E-53 T 12-10-2018 YPK_2353 a0c41d983287508cf5ec9d493b5b86d0 71 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 1.4E-18 T 12-10-2018 IPR007684 Zinc finger, Ogr/Delta-type YPK_0322 41ba2dce6ec63213c3bfcdf4da3c0a1a 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 46 8.7E-6 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_0322 41ba2dce6ec63213c3bfcdf4da3c0a1a 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 131 3.3E-8 T 12-10-2018 IPR001451 Hexapeptide repeat YPK_0322 41ba2dce6ec63213c3bfcdf4da3c0a1a 180 Gene3D G3DSA:2.160.10.10 1 180 3.0E-55 T 12-10-2018 YPK_0322 41ba2dce6ec63213c3bfcdf4da3c0a1a 180 SUPERFAMILY SSF51161 3 175 9.15E-46 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily YPK_0480 2d0566174494a235ec5bb14b512acec1 833 Pfam PF03538 Salmonella virulence plasmid 28.1kDa A protein 74 265 1.3E-16 T 12-10-2018 IPR018003 Insecticidal toxin complex/plasmid virulence protein YPK_2385 3cd362ebff1f96e508661f277bf2906c 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 265 4.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_2385 3cd362ebff1f96e508661f277bf2906c 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 234 249 4.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_2385 3cd362ebff1f96e508661f277bf2906c 291 Gene3D G3DSA:1.10.10.60 165 276 3.0E-19 T 12-10-2018 YPK_2385 3cd362ebff1f96e508661f277bf2906c 291 Pfam PF12833 Helix-turn-helix domain 190 265 2.8E-11 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_2385 3cd362ebff1f96e508661f277bf2906c 291 SUPERFAMILY SSF46689 218 270 7.62E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_2385 3cd362ebff1f96e508661f277bf2906c 291 SUPERFAMILY SSF51215 34 154 8.5E-5 T 12-10-2018 IPR037923 Transcription regulator HTH-like YPK_2385 3cd362ebff1f96e508661f277bf2906c 291 SMART SM00342 183 265 2.9E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_3286 ca861712913720916ece3e7fd9774ae4 252 Pfam PF07238 PilZ domain 118 236 7.3E-12 T 12-10-2018 IPR009875 PilZ domain GO:0035438 YPK_3286 ca861712913720916ece3e7fd9774ae4 252 Gene3D G3DSA:2.30.110.10 10 118 2.3E-6 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 YPK_3286 ca861712913720916ece3e7fd9774ae4 252 Gene3D G3DSA:2.40.10.220 120 247 1.4E-34 T 12-10-2018 YPK_3286 ca861712913720916ece3e7fd9774ae4 252 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 7 245 29.836 T 12-10-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 YPK_3286 ca861712913720916ece3e7fd9774ae4 252 Pfam PF07317 Flagellar regulator YcgR 12 115 1.4E-30 T 12-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal YPK_3720 ff594fde28501ad0463330cbd4badfee 351 Gene3D G3DSA:3.20.20.30 14 343 6.7E-96 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 YPK_3720 ff594fde28501ad0463330cbd4badfee 351 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 20 340 1.7E-137 T 12-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 YPK_3720 ff594fde28501ad0463330cbd4badfee 351 SUPERFAMILY SSF51679 19 340 2.62E-82 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 YPK_3720 ff594fde28501ad0463330cbd4badfee 351 Pfam PF00296 Luciferase-like monooxygenase 34 255 4.8E-29 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 Gene3D G3DSA:3.40.50.720 8 281 8.2E-105 T 12-10-2018 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 218 230 - T 12-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 1.7E-42 T 12-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 8.4E-22 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 8.4E-22 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 8.4E-22 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 8.4E-22 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 SUPERFAMILY SSF48179 283 487 9.18E-66 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 SUPERFAMILY SSF51735 3 282 1.18E-94 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 Gene3D G3DSA:1.10.1040.10 282 490 1.6E-78 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 YPK_2779 ba3a9a738b8a05640d5a2e657df3054a 490 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 216 462 1.2E-94 T 12-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 YPK_0705 24d11d2a3cd4eba09ca0b831493b8da9 90 Pfam PF01313 Bacterial export proteins, family 3 9 78 2.5E-25 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_0705 24d11d2a3cd4eba09ca0b831493b8da9 90 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 2 88 8.5E-27 T 12-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 YPK_0705 24d11d2a3cd4eba09ca0b831493b8da9 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 19 40 6.6E-17 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_0705 24d11d2a3cd4eba09ca0b831493b8da9 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 55 77 6.6E-17 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_0705 24d11d2a3cd4eba09ca0b831493b8da9 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 40 55 6.6E-17 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_0705 24d11d2a3cd4eba09ca0b831493b8da9 90 PIRSF PIRSF004669 2 90 1.8E-30 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 YPK_3118 1ab16a6deba8b4d5c919495392a8b61a 176 Pfam PF13248 zinc-ribbon domain 62 86 1.0E-6 T 12-10-2018 YPK_0829 a154b9e58393e42e7833d1c8b5cf6257 184 Pfam PF02325 YGGT family 10 76 1.3E-19 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 YPK_0829 a154b9e58393e42e7833d1c8b5cf6257 184 Pfam PF02325 YGGT family 108 172 7.2E-19 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 YPK_1618 0b441984c3856ee2cf52375d80edec6f 548 ProSitePatterns PS01303 BCCT family of transporters signature. 311 320 - T 12-10-2018 IPR018093 BCCT transporter, conserved site YPK_1618 0b441984c3856ee2cf52375d80edec6f 548 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 13 498 2.0E-116 T 12-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 YPK_1618 0b441984c3856ee2cf52375d80edec6f 548 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 55 498 2.6E-149 T 12-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 YPK_3707 0d1ca9dc8a68369b91241bc8c8672b70 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 272 8.4E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_3707 0d1ca9dc8a68369b91241bc8c8672b70 279 Gene3D G3DSA:1.10.3720.10 1 270 4.6E-61 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3707 0d1ca9dc8a68369b91241bc8c8672b70 279 SUPERFAMILY SSF161098 3 279 3.74E-66 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1607 d338f55e10d46545b14c747fee601027 312 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 21 288 2.6E-24 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YPK_1607 d338f55e10d46545b14c747fee601027 312 Gene3D G3DSA:1.20.1510.10 19 223 6.0E-24 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YPK_1607 d338f55e10d46545b14c747fee601027 312 SUPERFAMILY SSF161111 16 223 1.07E-34 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily YPK_1607 d338f55e10d46545b14c747fee601027 312 Pfam PF01545 Cation efflux family 22 221 5.9E-34 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 YPK_1962 835215953e38a3be5c17aa8a860c1212 353 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 341 1.9E-48 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_3769 8c3cafe8ab3e841bdea8c8f805f14d84 1291 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 955 1291 1.1E-63 T 12-10-2018 IPR007452 Translocation and assembly module TamB YPK_1748 aa8f19ca9f15db615e1760ba9e3a313e 451 Pfam PF00691 OmpA family 159 253 3.8E-12 T 12-10-2018 IPR006665 OmpA-like domain YPK_1748 aa8f19ca9f15db615e1760ba9e3a313e 451 SUPERFAMILY SSF103088 155 263 1.44E-18 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_1748 aa8f19ca9f15db615e1760ba9e3a313e 451 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 13 66 1.1E-18 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain YPK_1748 aa8f19ca9f15db615e1760ba9e3a313e 451 Gene3D G3DSA:3.30.1330.60 106 293 3.1E-61 T 12-10-2018 IPR036737 OmpA-like domain superfamily YPK_2048 7bd7da05052cb8fde01c837fcdaa7e3e 104 SMART SM00749 42 104 6.4E-8 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria YPK_2048 7bd7da05052cb8fde01c837fcdaa7e3e 104 Pfam PF04972 BON domain 37 103 4.7E-21 T 12-10-2018 IPR007055 BON domain YPK_2440 8fb76384d2675914e1334c52e4ede829 316 PIRSF PIRSF006431 2 316 6.1E-139 T 12-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 YPK_2440 8fb76384d2675914e1334c52e4ede829 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 40 48 3.9E-13 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 YPK_2440 8fb76384d2675914e1334c52e4ede829 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 66 77 3.9E-13 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 YPK_2440 8fb76384d2675914e1334c52e4ede829 316 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 3.9E-13 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 YPK_2440 8fb76384d2675914e1334c52e4ede829 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 3.4E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_2440 8fb76384d2675914e1334c52e4ede829 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 3.4E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_2440 8fb76384d2675914e1334c52e4ede829 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 3.4E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_2440 8fb76384d2675914e1334c52e4ede829 316 Gene3D G3DSA:3.40.50.1820 1 316 3.4E-111 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2440 8fb76384d2675914e1334c52e4ede829 316 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 12 314 1.5E-125 T 12-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 YPK_2440 8fb76384d2675914e1334c52e4ede829 316 SUPERFAMILY SSF53474 7 313 4.47E-60 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2440 8fb76384d2675914e1334c52e4ede829 316 Pfam PF00561 alpha/beta hydrolase fold 41 297 2.1E-30 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_0258 da2c2e48700498e514a81388f0d1cc15 353 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 43 248 1.9E-21 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 YPK_0258 da2c2e48700498e514a81388f0d1cc15 353 Gene3D G3DSA:1.10.8.450 252 295 2.0E-49 T 12-10-2018 YPK_0258 da2c2e48700498e514a81388f0d1cc15 353 SUPERFAMILY SSF53850 53 325 1.79E-45 T 12-10-2018 YPK_0258 da2c2e48700498e514a81388f0d1cc15 353 Gene3D G3DSA:3.40.190.10 46 324 2.0E-49 T 12-10-2018 YPK_0258 da2c2e48700498e514a81388f0d1cc15 353 SMART SM00062 43 258 3.1E-20 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_0258 da2c2e48700498e514a81388f0d1cc15 353 Gene3D G3DSA:3.40.190.10 121 216 2.0E-49 T 12-10-2018 YPK_0258 da2c2e48700498e514a81388f0d1cc15 353 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 44 339 5.2E-134 T 12-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 YPK_0962 58c3ffdd4f03bddc3c730ec581f6f9f3 285 Gene3D G3DSA:3.90.1720.10 53 235 7.2E-11 T 12-10-2018 YPK_0962 58c3ffdd4f03bddc3c730ec581f6f9f3 285 SUPERFAMILY SSF54001 58 232 5.89E-28 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YPK_0962 58c3ffdd4f03bddc3c730ec581f6f9f3 285 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 59 151 5.9E-9 T 12-10-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPK_2301 384188ea56756bc8600dcc5e2f7a5371 171 Pfam PF04985 Phage tail tube protein FII 4 170 6.1E-65 T 12-10-2018 IPR006498 Tail tube protein YPK_2301 384188ea56756bc8600dcc5e2f7a5371 171 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 171 2.8E-54 T 12-10-2018 IPR006498 Tail tube protein YPK_1441 dc78becdcf30156a1557503e2c0def9f 329 Pfam PF00248 Aldo/keto reductase family 28 328 3.6E-67 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain YPK_1441 dc78becdcf30156a1557503e2c0def9f 329 SUPERFAMILY SSF51430 13 327 1.11E-86 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_1441 dc78becdcf30156a1557503e2c0def9f 329 Gene3D G3DSA:3.20.20.100 15 329 8.8E-118 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_2103 e9754e20d8637a944700be16144dd5ad 372 SUPERFAMILY SSF103481 58 147 4.18E-11 T 12-10-2018 YPK_2103 e9754e20d8637a944700be16144dd5ad 372 SUPERFAMILY SSF103481 206 296 5.89E-6 T 12-10-2018 YPK_2103 e9754e20d8637a944700be16144dd5ad 372 Pfam PF00892 EamA-like transporter family 10 144 3.6E-20 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_2103 e9754e20d8637a944700be16144dd5ad 372 Pfam PF00892 EamA-like transporter family 163 291 1.0E-7 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_0187 6cc8d07585403c405caddefb389fe524 216 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 14 212 8.3E-30 T 12-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 YPK_0187 6cc8d07585403c405caddefb389fe524 216 Pfam PF06890 Bacteriophage Mu Gp45 protein 20 203 2.4E-53 T 12-10-2018 IPR014462 Phage-associated protein Gp45 YPK_0187 6cc8d07585403c405caddefb389fe524 216 PIRSF PIRSF012337 1 216 1.2E-69 T 12-10-2018 IPR014462 Phage-associated protein Gp45 YPK_0187 6cc8d07585403c405caddefb389fe524 216 Gene3D G3DSA:2.20.25.540 87 146 5.3E-11 T 12-10-2018 YPK_3926 d8332cf4f32a0b3d086a7b98ab3b2cef 88 SUPERFAMILY SSF46689 1 73 7.7E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3926 d8332cf4f32a0b3d086a7b98ab3b2cef 88 Gene3D G3DSA:1.10.10.60 9 78 2.7E-6 T 12-10-2018 YPK_3926 d8332cf4f32a0b3d086a7b98ab3b2cef 88 Pfam PF01527 Transposase 2 71 2.0E-23 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 YPK_1947 c4d83628e6954b2d4b300f59c8814c69 777 Pfam PF13208 TerB N-terminal domain 110 312 6.9E-50 T 12-10-2018 IPR025266 TerB, N-terminal YPK_1947 c4d83628e6954b2d4b300f59c8814c69 777 SUPERFAMILY SSF158682 525 638 5.89E-15 T 12-10-2018 IPR029024 TerB-like YPK_1947 c4d83628e6954b2d4b300f59c8814c69 777 Pfam PF15615 TerB-C domain 661 774 4.9E-7 T 12-10-2018 IPR028932 TerB-C domain YPK_1722 cc3a5b17f213232849706ef6c6f4f6bf 208 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 35 206 6.8E-58 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 YPK_1722 cc3a5b17f213232849706ef6c6f4f6bf 208 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 66 80 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 YPK_1722 cc3a5b17f213232849706ef6c6f4f6bf 208 Pfam PF00849 RNA pseudouridylate synthase 60 176 5.3E-12 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1722 cc3a5b17f213232849706ef6c6f4f6bf 208 SUPERFAMILY SSF55120 29 206 1.54E-41 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_1722 cc3a5b17f213232849706ef6c6f4f6bf 208 Gene3D G3DSA:3.30.70.1560 95 195 3.8E-41 T 12-10-2018 YPK_1722 cc3a5b17f213232849706ef6c6f4f6bf 208 Gene3D G3DSA:3.30.70.580 19 94 3.0E-27 T 12-10-2018 YPK_4024 e29d5246f1b66971c718bbd9870f6f89 361 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 357 3.9E-180 T 12-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 YPK_4024 e29d5246f1b66971c718bbd9870f6f89 361 SUPERFAMILY SSF53756 83 268 8.47E-5 T 12-10-2018 YPK_4024 e29d5246f1b66971c718bbd9870f6f89 361 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 361 68.027 T 12-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 YPK_1895 ba832b7e4258813a7a771d75fb96373a 75 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 2.2E-35 T 12-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 YPK_1895 ba832b7e4258813a7a771d75fb96373a 75 Pfam PF06667 Phage shock protein B 4 74 1.2E-32 T 12-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 YPK_3780 86628b9bb7eb05988500d41284089bde 151 Pfam PF12582 Protein of unknown function (DUF3757) 20 142 3.3E-35 T 12-10-2018 IPR022231 Protein of unknown function DUF3757 YPK_1921 328a37c135aa3fd046ae79c54cdfecbb 123 PIRSF PIRSF025560 1 123 1.2E-44 T 12-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 YPK_1921 328a37c135aa3fd046ae79c54cdfecbb 123 Pfam PF07027 Protein of unknown function (DUF1318) 35 123 1.1E-29 T 12-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 YPK_1931 3137afbf4b55322eaeb6880c8f056c89 192 Pfam PF04264 YceI-like domain 26 187 3.7E-40 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YPK_1931 3137afbf4b55322eaeb6880c8f056c89 192 SMART SM00867 25 189 1.9E-70 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like YPK_1931 3137afbf4b55322eaeb6880c8f056c89 192 SUPERFAMILY SSF101874 23 189 7.32E-56 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily YPK_1931 3137afbf4b55322eaeb6880c8f056c89 192 Gene3D G3DSA:2.40.128.110 24 191 9.1E-56 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily YPK_1931 3137afbf4b55322eaeb6880c8f056c89 192 Hamap MF_00780 Protein YceI [yceI]. 2 192 45.01 T 12-10-2018 IPR023480 Uncharacterised protein family UPF0312/YceI YPK_0065 18e82e6ad510906b6c3343bce65b384b 255 Pfam PF02384 N-6 DNA Methylase 198 229 9.5E-6 T 12-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 YPK_0065 18e82e6ad510906b6c3343bce65b384b 255 Pfam PF12161 HsdM N-terminal domain 14 164 2.7E-6 T 12-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain YPK_0065 18e82e6ad510906b6c3343bce65b384b 255 SUPERFAMILY SSF53335 14 228 2.77E-18 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0065 18e82e6ad510906b6c3343bce65b384b 255 Gene3D G3DSA:1.20.1260.30 1 186 1.1E-47 T 12-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily YPK_1634 494a4e9776c0d38ff895e73b2d9dd8b7 428 Gene3D G3DSA:3.40.190.10 38 384 6.0E-107 T 12-10-2018 YPK_1634 494a4e9776c0d38ff895e73b2d9dd8b7 428 Gene3D G3DSA:3.40.190.10 154 405 6.0E-107 T 12-10-2018 YPK_1634 494a4e9776c0d38ff895e73b2d9dd8b7 428 Pfam PF13416 Bacterial extracellular solute-binding protein 56 364 1.5E-34 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_1634 494a4e9776c0d38ff895e73b2d9dd8b7 428 SUPERFAMILY SSF53850 22 427 1.03E-61 T 12-10-2018 YPK_3827 b5f245c3a83c4b86c7a6bccf48cdbe34 119 Pfam PF03091 CutA1 divalent ion tolerance protein 19 116 4.5E-34 T 12-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 YPK_3827 b5f245c3a83c4b86c7a6bccf48cdbe34 119 SUPERFAMILY SSF54913 15 117 6.67E-36 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta YPK_3827 b5f245c3a83c4b86c7a6bccf48cdbe34 119 Hamap MF_01160 Divalent-cation tolerance protein CutA [cutA]. 13 119 36.414 T 12-10-2018 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria GO:0005507|GO:0005737 YPK_3827 b5f245c3a83c4b86c7a6bccf48cdbe34 119 Gene3D G3DSA:3.30.70.120 4 118 1.6E-40 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YPK_3110 03e1d0ad2147775cbde353286fdcaa9a 145 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 26 145 7.3E-18 T 12-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_2579 46f5670b00645a03d7285f122fc9e629 256 Gene3D G3DSA:3.40.50.720 5 256 3.8E-89 T 12-10-2018 YPK_2579 46f5670b00645a03d7285f122fc9e629 256 Pfam PF00899 ThiF family 13 245 4.4E-63 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 YPK_2579 46f5670b00645a03d7285f122fc9e629 256 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 9 248 5.1E-123 T 12-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 YPK_2579 46f5670b00645a03d7285f122fc9e629 256 SUPERFAMILY SSF69572 4 248 3.92E-87 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 YPK_3486 347486e69c2ebdd22498eedb5f303f15 119 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 117 4.0E-63 T 12-10-2018 IPR008249 Uncharacterised protein family UPF0231 YPK_3486 347486e69c2ebdd22498eedb5f303f15 119 PIRSF PIRSF006287 1 119 4.3E-50 T 12-10-2018 IPR008249 Uncharacterised protein family UPF0231 YPK_3486 347486e69c2ebdd22498eedb5f303f15 119 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 29.976 T 12-10-2018 IPR008249 Uncharacterised protein family UPF0231 YPK_3486 347486e69c2ebdd22498eedb5f303f15 119 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 5.0E-44 T 12-10-2018 IPR008249 Uncharacterised protein family UPF0231 YPK_1439 0700a9a2b7f608871b538d01b258d7f5 409 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 20 377 3.9E-98 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YPK_1439 0700a9a2b7f608871b538d01b258d7f5 409 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 1 409 36.303 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YPK_1439 0700a9a2b7f608871b538d01b258d7f5 409 Pfam PF01566 Natural resistance-associated macrophage protein 38 382 4.8E-122 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YPK_1439 0700a9a2b7f608871b538d01b258d7f5 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 2.9E-31 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YPK_1439 0700a9a2b7f608871b538d01b258d7f5 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 125 144 2.9E-31 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YPK_1439 0700a9a2b7f608871b538d01b258d7f5 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 150 171 2.9E-31 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YPK_1439 0700a9a2b7f608871b538d01b258d7f5 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 97 123 2.9E-31 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YPK_1439 0700a9a2b7f608871b538d01b258d7f5 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 200 223 2.9E-31 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 YPK_1590 dfd28f59f92ee4788cee2a138d4fcca8 272 Pfam PF12697 Alpha/beta hydrolase family 25 253 3.6E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_1590 dfd28f59f92ee4788cee2a138d4fcca8 272 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 22 259 6.8E-84 T 12-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 YPK_1590 dfd28f59f92ee4788cee2a138d4fcca8 272 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 18 260 34.896 T 12-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 YPK_1590 dfd28f59f92ee4788cee2a138d4fcca8 272 SUPERFAMILY SSF53474 20 261 5.96E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1590 dfd28f59f92ee4788cee2a138d4fcca8 272 Gene3D G3DSA:3.40.50.1820 14 261 2.3E-59 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0573 c1fba4b468496356b21a749a253c3ff1 118 Gene3D G3DSA:3.40.1350.120 1 118 2.7E-49 T 12-10-2018 YPK_3942 239e3e2d3e7ab9d5eabbb903875c264c 88 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 86 23.003 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 YPK_3942 239e3e2d3e7ab9d5eabbb903875c264c 88 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 2.7E-20 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 YPK_3942 239e3e2d3e7ab9d5eabbb903875c264c 88 Pfam PF02416 mttA/Hcf106 family 4 56 3.4E-12 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 YPK_4021 226136f33cfd7c7aa108b1d04b0b693a 463 Gene3D G3DSA:1.20.1740.10 11 461 2.9E-52 T 12-10-2018 YPK_4021 226136f33cfd7c7aa108b1d04b0b693a 463 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YPK_4021 226136f33cfd7c7aa108b1d04b0b693a 463 Pfam PF00324 Amino acid permease 18 430 5.0E-101 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YPK_4021 226136f33cfd7c7aa108b1d04b0b693a 463 PIRSF PIRSF006060 1 461 4.2E-60 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 Gene3D G3DSA:3.40.630.30 1 211 1.5E-56 T 12-10-2018 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 Pfam PF00765 Autoinducer synthase 13 187 6.5E-71 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 119 140 1.8E-64 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 163 180 1.8E-64 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 1.8E-64 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 141 162 1.8E-64 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 1.8E-64 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 1.8E-64 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 PRINTS PR01549 Autoinducer synthesis protein signature 94 106 1.8E-64 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 12-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 YPK_0792 a13902a6c643a531440160ad1e3fd1ed 216 SUPERFAMILY SSF55729 1 210 5.93E-46 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_3808 41ce4558ad3555c73278c974b619ed62 227 SMART SM00479 53 226 2.3E-20 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_3808 41ce4558ad3555c73278c974b619ed62 227 Pfam PF00929 Exonuclease 55 216 4.5E-34 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III YPK_3808 41ce4558ad3555c73278c974b619ed62 227 Hamap MF_00045 Oligoribonuclease [orn]. 49 227 44.454 T 12-10-2018 IPR022894 Oligoribonuclease GO:0000175 YPK_3808 41ce4558ad3555c73278c974b619ed62 227 Gene3D G3DSA:3.30.420.10 43 227 2.4E-70 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 YPK_3808 41ce4558ad3555c73278c974b619ed62 227 SUPERFAMILY SSF53098 50 225 1.48E-46 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily YPK_1571 70e86819fcfe057ec7c5ec11e52aa48c 510 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 496 9.8E-182 T 12-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1571 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 9.4E-37 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1571 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 9.4E-37 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1571 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 9.4E-37 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1571 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 9.4E-37 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1571 70e86819fcfe057ec7c5ec11e52aa48c 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 9.4E-37 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_1571 70e86819fcfe057ec7c5ec11e52aa48c 510 Pfam PF00361 Proton-conducting membrane transporter 134 431 1.8E-70 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 YPK_2197 1c7e7e34f45d54709f046cda2751cde8 301 Pfam PF13646 HEAT repeats 222 292 2.3E-9 T 12-10-2018 YPK_2197 1c7e7e34f45d54709f046cda2751cde8 301 Gene3D G3DSA:1.25.10.10 201 300 2.1E-5 T 12-10-2018 IPR011989 Armadillo-like helical YPK_2197 1c7e7e34f45d54709f046cda2751cde8 301 SUPERFAMILY SSF48371 201 291 4.41E-6 T 12-10-2018 IPR016024 Armadillo-type fold YPK_2326 2be297957a03e7ade429867ae5c2aca8 241 Gene3D G3DSA:3.40.50.300 4 191 7.4E-7 T 12-10-2018 YPK_2326 2be297957a03e7ade429867ae5c2aca8 241 Pfam PF03237 Terminase-like family 41 230 7.5E-16 T 12-10-2018 IPR004921 Terminase large subunit, T4likevirus-type YPK_3788 37570989b8e496bc6de8a0f7d9951c7a 547 Gene3D G3DSA:1.20.140.10 294 472 1.5E-36 T 12-10-2018 YPK_3788 37570989b8e496bc6de8a0f7d9951c7a 547 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 187 199 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 YPK_3788 37570989b8e496bc6de8a0f7d9951c7a 547 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 185 283 1.2E-12 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 YPK_3788 37570989b8e496bc6de8a0f7d9951c7a 547 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 293 446 5.3E-29 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 YPK_3788 37570989b8e496bc6de8a0f7d9951c7a 547 SUPERFAMILY SSF47203 291 451 1.21E-38 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 YPK_3788 37570989b8e496bc6de8a0f7d9951c7a 547 Gene3D G3DSA:2.40.110.20 134 293 2.2E-54 T 12-10-2018 YPK_3788 37570989b8e496bc6de8a0f7d9951c7a 547 SUPERFAMILY SSF56645 65 290 5.92E-29 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 YPK_3861 58cbea32495370e49791f95ad08149a3 123 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 12-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 YPK_3861 58cbea32495370e49791f95ad08149a3 123 Pfam PF01219 Prokaryotic diacylglycerol kinase 17 117 1.0E-33 T 12-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 YPK_3861 58cbea32495370e49791f95ad08149a3 123 Gene3D G3DSA:1.10.3830.10 2 122 2.3E-40 T 12-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 YPK_1366 a536e02287fc923fc30d1b27bbfa1c75 289 Pfam PF04228 Putative neutral zinc metallopeptidase 1 286 3.5E-134 T 12-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative YPK_4012 a25be193d5dd635d9377a6687609011b 66 Pfam PF13627 Prokaryotic lipoprotein-attachment site 10 29 9.3E-9 T 12-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site YPK_3263 a57d62d0e9976f699869817f934c0cc6 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 60 78 1.7E-16 T 12-10-2018 IPR003849 Preprotein translocase YajC YPK_3263 a57d62d0e9976f699869817f934c0cc6 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 22 42 1.7E-16 T 12-10-2018 IPR003849 Preprotein translocase YajC YPK_3263 a57d62d0e9976f699869817f934c0cc6 111 Pfam PF02699 Preprotein translocase subunit 24 100 1.8E-26 T 12-10-2018 IPR003849 Preprotein translocase YajC YPK_3263 a57d62d0e9976f699869817f934c0cc6 111 SMART SM01323 20 103 1.7E-37 T 12-10-2018 IPR003849 Preprotein translocase YajC YPK_3263 a57d62d0e9976f699869817f934c0cc6 111 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 103 2.3E-32 T 12-10-2018 IPR003849 Preprotein translocase YajC YPK_4123 03f79c66e4ab2b30ce8b05dba0e09481 258 SUPERFAMILY SSF53850 33 257 1.25E-39 T 12-10-2018 YPK_4123 03f79c66e4ab2b30ce8b05dba0e09481 258 Gene3D G3DSA:3.40.190.10 41 248 2.0E-26 T 12-10-2018 YPK_4123 03f79c66e4ab2b30ce8b05dba0e09481 258 Gene3D G3DSA:3.40.190.10 111 218 2.0E-26 T 12-10-2018 YPK_4123 03f79c66e4ab2b30ce8b05dba0e09481 258 Pfam PF13531 Bacterial extracellular solute-binding protein 34 255 1.4E-32 T 12-10-2018 YPK_0640 3a9c20c2037a024d43491e91375dc7a9 272 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 271 18.356 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 YPK_0640 3a9c20c2037a024d43491e91375dc7a9 272 Pfam PF02673 Bacitracin resistance protein BacA 10 266 9.2E-86 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 YPK_0640 3a9c20c2037a024d43491e91375dc7a9 272 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 264 6.6E-99 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 YPK_0890 5829eef98fc25858c27a8b7ae6f16949 90 Pfam PF17399 Domain of unknown function (DUF5405) 4 87 9.0E-19 T 12-10-2018 IPR035404 Domain of unknown function DUF5405 YPK_0890 5829eef98fc25858c27a8b7ae6f16949 90 ProDom PD029230 GPA 5'REGION GP83 ORF83 GENE GP45 BACTERIOPHAGE SIMILAR ORF4 1 76 4.0E-15 T 12-10-2018 IPR020284 Protein of unknown function CP83 YPK_3202 ff66418a3665dc58f7172eeeefcc96b7 178 Pfam PF07445 Primosomal replication protein priC 9 175 3.3E-54 T 12-10-2018 IPR010890 Primosomal replication PriB/PriC YPK_3202 ff66418a3665dc58f7172eeeefcc96b7 178 Gene3D G3DSA:1.20.1270.340 1 98 1.4E-33 T 12-10-2018 IPR038338 PriB/PriC superfamily YPK_3566 8b7f59a12ef45fcffde537fec700f8fa 328 Pfam PF06812 ImpA, N-terminal, type VI secretion system 12 120 4.3E-12 T 12-10-2018 IPR010657 ImpA, N-terminal YPK_2639 2a90fb489b4fce124c0bc10d12a8c097 428 Pfam PF04403 Paraquat-inducible protein A 56 206 2.9E-39 T 12-10-2018 IPR007498 Intermembrane transport protein PqiA-like YPK_2639 2a90fb489b4fce124c0bc10d12a8c097 428 Pfam PF04403 Paraquat-inducible protein A 259 415 1.8E-53 T 12-10-2018 IPR007498 Intermembrane transport protein PqiA-like YPK_2639 2a90fb489b4fce124c0bc10d12a8c097 428 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 13 414 1.7E-158 T 12-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type YPK_2615 d4a2858f5f560b0618f71054f73ecd07 1014 Gene3D G3DSA:3.60.100.10 720 1014 1.1E-87 T 12-10-2018 IPR037040 Cytotoxic necrotizing factor, Rho-activating domain superfamily YPK_2615 d4a2858f5f560b0618f71054f73ecd07 1014 Pfam PF05785 Rho-activating domain of cytotoxic necrotizing factor 730 1008 1.5E-23 T 12-10-2018 IPR008430 Cytotoxic necrotizing factor, Rho-activating domain YPK_2615 d4a2858f5f560b0618f71054f73ecd07 1014 SUPERFAMILY SSF64438 721 1014 4.21E-115 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPK_2615 d4a2858f5f560b0618f71054f73ecd07 1014 Pfam PF15962 Domain of unknown function (DUF4765) 520 696 2.5E-23 T 12-10-2018 IPR031886 Domain of unknown function DUF4765 YPK_4121 e082bab057e29ce223f71e8b59e2c2ed 237 Gene3D G3DSA:3.50.30.40 29 179 4.3E-51 T 12-10-2018 YPK_4121 e082bab057e29ce223f71e8b59e2c2ed 237 Pfam PF03737 Aldolase/RraA 32 178 5.5E-38 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein YPK_4121 e082bab057e29ce223f71e8b59e2c2ed 237 SUPERFAMILY SSF89562 27 188 6.54E-48 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily YPK_4121 e082bab057e29ce223f71e8b59e2c2ed 237 TIGRFAM TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase 8 229 1.4E-104 T 12-10-2018 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase KEGG: 00362+4.1.3.17|KEGG: 00660+4.1.3.17|MetaCyc: PWY-7701 YPK_0122 87effcef70ddec67336cb0345be0e29c 531 Pfam PF01384 Phosphate transporter family 63 520 9.5E-88 T 12-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 YPK_0407 5fdbbdd4f52f8bf1d6a08efa550345f9 120 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 57 109 1.5E-18 T 12-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 YPK_1373 3ba0040f96023a5b327ef624598b7889 132 Pfam PF03960 ArsC family 13 122 1.4E-13 T 12-10-2018 IPR006660 Arsenate reductase-like YPK_1373 3ba0040f96023a5b327ef624598b7889 132 Gene3D G3DSA:3.40.30.10 9 124 8.0E-40 T 12-10-2018 YPK_1373 3ba0040f96023a5b327ef624598b7889 132 SUPERFAMILY SSF52833 11 123 1.09E-30 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_1373 3ba0040f96023a5b327ef624598b7889 132 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 10 124 1.5E-41 T 12-10-2018 IPR006504 Transcriptional regulator Spx/MgsR YPK_2587 765b2164f9706de26246832f87659816 587 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 6 580 1.9E-173 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_2587 765b2164f9706de26246832f87659816 587 PIRSF PIRSF028304 1 586 5.2E-162 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_2587 765b2164f9706de26246832f87659816 587 Pfam PF05947 Type VI secretion system, TssF 6 584 3.6E-190 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_1245 dbad7e1f957a6f8d0b7d92e83e0cc0cb 593 Pfam PF02368 Bacterial Ig-like domain (group 2) 299 352 1.1E-5 T 12-10-2018 IPR003343 Bacterial Ig-like, group 2 YPK_1245 dbad7e1f957a6f8d0b7d92e83e0cc0cb 593 Gene3D G3DSA:2.60.40.1080 295 376 7.1E-7 T 12-10-2018 YPK_1245 dbad7e1f957a6f8d0b7d92e83e0cc0cb 593 Gene3D G3DSA:2.60.40.1080 377 460 4.3E-5 T 12-10-2018 YPK_2349 f25523bb3c7bace78b294660e83f941b 115 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 25 103 2.4E-10 T 12-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative YPK_2302 f25523bb3c7bace78b294660e83f941b 115 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 25 103 2.4E-10 T 12-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative YPK_3817 9e935ec720447b7332bf5aa1ffd8dea5 153 Gene3D G3DSA:1.10.3730.20 49 153 1.3E-32 T 12-10-2018 YPK_3817 9e935ec720447b7332bf5aa1ffd8dea5 153 SUPERFAMILY SSF103481 54 152 7.06E-21 T 12-10-2018 YPK_3817 9e935ec720447b7332bf5aa1ffd8dea5 153 Pfam PF00893 Small Multidrug Resistance protein 50 142 3.9E-32 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 YPK_1923 0226f01764f920d2bea4a723edb56a37 318 Gene3D G3DSA:1.10.10.10 2 53 3.8E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_1923 0226f01764f920d2bea4a723edb56a37 318 Gene3D G3DSA:3.40.50.1360 54 313 7.1E-66 T 12-10-2018 YPK_1923 0226f01764f920d2bea4a723edb56a37 318 SUPERFAMILY SSF100950 58 314 2.47E-64 T 12-10-2018 IPR037171 NagB/RpiA transferase-like YPK_1923 0226f01764f920d2bea4a723edb56a37 318 Pfam PF04198 Putative sugar-binding domain 58 314 4.1E-69 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 YPK_0685 c0236c40a3b779518a176a89446d4183 423 Pfam PF13629 Pilus formation protein N terminal region 16 86 2.9E-13 T 12-10-2018 IPR032789 Pilus formation protein, N-terminal YPK_0685 c0236c40a3b779518a176a89446d4183 423 Pfam PF00263 Bacterial type II and III secretion system protein 220 375 1.8E-37 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 YPK_0685 c0236c40a3b779518a176a89446d4183 423 PRINTS PR00811 Bacterial general secretion pathway protein D signature 169 179 1.9E-6 T 12-10-2018 IPR001775 GspD/PilQ family YPK_0685 c0236c40a3b779518a176a89446d4183 423 PRINTS PR00811 Bacterial general secretion pathway protein D signature 340 358 1.9E-6 T 12-10-2018 IPR001775 GspD/PilQ family YPK_0685 c0236c40a3b779518a176a89446d4183 423 PRINTS PR01032 Gene IV protein signature 195 218 1.9E-5 T 12-10-2018 YPK_0685 c0236c40a3b779518a176a89446d4183 423 PRINTS PR01032 Gene IV protein signature 303 331 1.9E-5 T 12-10-2018 YPK_0685 c0236c40a3b779518a176a89446d4183 423 PRINTS PR01032 Gene IV protein signature 356 378 1.9E-5 T 12-10-2018 YPK_2768 4e42999b4f673c4cdb3cf44512014b22 362 SUPERFAMILY SSF53822 38 345 4.07E-52 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2768 4e42999b4f673c4cdb3cf44512014b22 362 Gene3D G3DSA:3.40.50.2300 47 298 1.1E-51 T 12-10-2018 YPK_2768 4e42999b4f673c4cdb3cf44512014b22 362 Pfam PF13407 Periplasmic binding protein domain 41 303 8.2E-46 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_2768 4e42999b4f673c4cdb3cf44512014b22 362 Gene3D G3DSA:3.40.50.2300 137 284 1.1E-51 T 12-10-2018 YPK_2252 03dfad23166572e441670fdc928e761b 639 Pfam PF03239 Iron permease FTR1 family 156 556 5.1E-95 T 12-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 YPK_1939 c6dc960b8606619e2a74ada8d5abbf34 463 Pfam PF13520 Amino acid permease 5 417 4.0E-74 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_1939 c6dc960b8606619e2a74ada8d5abbf34 463 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 462 4.1E-169 T 12-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 YPK_1939 c6dc960b8606619e2a74ada8d5abbf34 463 Gene3D G3DSA:1.20.1740.10 1 446 4.4E-56 T 12-10-2018 YPK_1939 c6dc960b8606619e2a74ada8d5abbf34 463 PIRSF PIRSF006060 1 461 3.7E-48 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_1864 73faffe3f9ffa41a384df89a59f9b342 283 SUPERFAMILY SSF54001 146 277 6.87E-40 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily YPK_1864 73faffe3f9ffa41a384df89a59f9b342 283 Gene3D G3DSA:3.90.1720.10 81 274 9.5E-41 T 12-10-2018 YPK_1864 73faffe3f9ffa41a384df89a59f9b342 283 Pfam PF00877 NlpC/P60 family 165 275 1.0E-31 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain YPK_3386 ac242ad0e7ba64e2267deacfc80e372a 205 SUPERFAMILY SSF141318 49 202 1.31E-43 T 12-10-2018 IPR036215 TM0957-like superfamily YPK_3386 ac242ad0e7ba64e2267deacfc80e372a 205 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 13 200 2.3E-35 T 12-10-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YPK_3386 ac242ad0e7ba64e2267deacfc80e372a 205 PIRSF PIRSF033535 1 204 1.2E-83 T 12-10-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YPK_1507 4f1e1259c5fc36eb7e64602e77fa4a14 98 Gene3D G3DSA:3.30.70.860 27 98 2.8E-26 T 12-10-2018 IPR035571 UPF0234-like, C-terminal YPK_1507 4f1e1259c5fc36eb7e64602e77fa4a14 98 Pfam PF04175 Protein of unknown function (DUF406) 8 98 1.4E-39 T 12-10-2018 IPR005272 Conserved hypothetical protein CHP00743 YPK_1507 4f1e1259c5fc36eb7e64602e77fa4a14 98 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 5 98 2.9E-39 T 12-10-2018 IPR005272 Conserved hypothetical protein CHP00743 YPK_3187 13f0e0cf899a857a0df90be30ba4908f 320 Gene3D G3DSA:3.90.550.10 2 203 1.6E-25 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3187 13f0e0cf899a857a0df90be30ba4908f 320 Pfam PF00535 Glycosyl transferase family 2 6 162 1.7E-16 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YPK_3187 13f0e0cf899a857a0df90be30ba4908f 320 SUPERFAMILY SSF53448 4 236 3.13E-26 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_4129 daa2a046b81ff4fa049b4f90e8d74b16 319 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 20 317 9.9E-68 T 12-10-2018 IPR010106 Recombination-promoting nuclease RpnA YPK_4129 daa2a046b81ff4fa049b4f90e8d74b16 319 Pfam PF04754 Putative transposase, YhgA-like 19 220 1.2E-87 T 12-10-2018 IPR006842 Transposase (putative), YhgA-like YPK_2364 99b8c43afc1ac7f2264de0ac02a6a9ea 434 SUPERFAMILY SSF54909 66 427 7.51E-97 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_2364 99b8c43afc1ac7f2264de0ac02a6a9ea 434 Pfam PF04261 Dyp-type peroxidase family 73 421 2.2E-110 T 12-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 YPK_2364 99b8c43afc1ac7f2264de0ac02a6a9ea 434 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 18 433 4.1E-168 T 12-10-2018 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 YPK_2364 99b8c43afc1ac7f2264de0ac02a6a9ea 434 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 73 421 1.7E-99 T 12-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 YPK_0440 61fa7ac68d136268efbdc5c5a11e3256 391 SUPERFAMILY SSF46565 249 289 4.45E-5 T 12-10-2018 IPR036869 Chaperone J-domain superfamily YPK_3226 844d4236adaf3d8e78397dd617cd7d26 567 SUPERFAMILY SSF53850 122 562 1.3E-50 T 12-10-2018 YPK_3226 844d4236adaf3d8e78397dd617cd7d26 567 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 118 1.7E-39 T 12-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain YPK_3226 844d4236adaf3d8e78397dd617cd7d26 567 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 166 348 5.1E-17 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_3226 844d4236adaf3d8e78397dd617cd7d26 567 Gene3D G3DSA:3.40.190.10 116 311 1.3E-25 T 12-10-2018 YPK_2448 fd6cca415565595131f78e5e75b11a49 85 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 46 6.0E-19 T 12-10-2018 IPR005371 Uncharacterised protein family UPF0181 YPK_2448 fd6cca415565595131f78e5e75b11a49 85 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 48 4.0E-27 T 12-10-2018 IPR005371 Uncharacterised protein family UPF0181 YPK_2448 fd6cca415565595131f78e5e75b11a49 85 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 58 20.122 T 12-10-2018 IPR005371 Uncharacterised protein family UPF0181 YPK_2102 e625f6ee82cb455acf8d07767592b838 424 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 41.936 T 12-10-2018 IPR006698 Uncharacterised protein family UPF0229 YPK_2102 e625f6ee82cb455acf8d07767592b838 424 Pfam PF04285 Protein of unknown function (DUF444) 4 420 2.0E-186 T 12-10-2018 IPR006698 Uncharacterised protein family UPF0229 YPK_1154 0b9df4a1419801ef4213d29aaf9669fa 142 Pfam PF00892 EamA-like transporter family 4 140 3.5E-21 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1154 0b9df4a1419801ef4213d29aaf9669fa 142 SUPERFAMILY SSF103481 41 141 1.96E-14 T 12-10-2018 YPK_3445 3b592ab84d001dbeaba62073a39bedec 201 Gene3D G3DSA:2.60.40.200 47 201 5.2E-55 T 12-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YPK_3445 3b592ab84d001dbeaba62073a39bedec 201 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 189 200 - T 12-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YPK_3445 3b592ab84d001dbeaba62073a39bedec 201 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 60 200 1.4E-30 T 12-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YPK_3445 3b592ab84d001dbeaba62073a39bedec 201 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 92 102 - T 12-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YPK_3445 3b592ab84d001dbeaba62073a39bedec 201 SUPERFAMILY SSF49329 50 201 9.69E-50 T 12-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 YPK_0880 c3abe7f6ff3c7c64eb907e9d3d8ed8f2 485 PIRSF PIRSF004548 1 459 3.2E-194 T 12-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD YPK_0880 c3abe7f6ff3c7c64eb907e9d3d8ed8f2 485 Pfam PF06123 Inner membrane protein CreD 6 428 1.9E-149 T 12-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD YPK_2235 5b9249e7be1416a06c33128d9a16134b 262 SUPERFAMILY SSF52540 57 239 7.09E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2235 5b9249e7be1416a06c33128d9a16134b 262 Pfam PF02562 PhoH-like protein 57 261 1.8E-77 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 YPK_2235 5b9249e7be1416a06c33128d9a16134b 262 Gene3D G3DSA:3.40.50.300 54 262 2.0E-65 T 12-10-2018 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 4.9E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 4.9E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 4.9E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 Gene3D G3DSA:3.40.50.12740 4 195 3.3E-51 T 12-10-2018 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 SUPERFAMILY SSF46894 122 194 2.79E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 Pfam PF00072 Response regulator receiver domain 5 114 1.7E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 153 180 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 SMART SM00421 136 193 1.3E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 191 4.3E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 SMART SM00448 3 113 2.1E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 YPK_0081 93c41d97b4c1673d174a8f689d6761ef 196 SUPERFAMILY SSF52172 2 129 1.57E-24 T 12-10-2018 IPR011006 CheY-like superfamily YPK_0741 335cc080a6aab0be9e5c726560b61ff0 498 Pfam PF07906 ShET2 enterotoxin, N-terminal region 8 296 7.1E-108 T 12-10-2018 IPR012927 ShET2 enterotoxin, N-terminal YPK_4210 4d111f438c7fc1cfc812338d3e7a6872 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 32.831 T 12-10-2018 IPR023064 D-ribose pyranase GO:0016872 YPK_4210 4d111f438c7fc1cfc812338d3e7a6872 139 SUPERFAMILY SSF102546 1 139 3.14E-44 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YPK_4210 4d111f438c7fc1cfc812338d3e7a6872 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 3.2E-49 T 12-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YPK_4210 4d111f438c7fc1cfc812338d3e7a6872 139 Gene3D G3DSA:3.40.1650.10 8 136 2.1E-36 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 YPK_3377 c8d644c7373993f66c8ee56778a62243 446 Gene3D G3DSA:1.20.1250.20 5 184 8.3E-11 T 12-10-2018 YPK_3377 c8d644c7373993f66c8ee56778a62243 446 Pfam PF07690 Major Facilitator Superfamily 12 286 8.5E-18 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3377 c8d644c7373993f66c8ee56778a62243 446 SUPERFAMILY SSF103473 6 370 5.62E-39 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3377 c8d644c7373993f66c8ee56778a62243 446 Gene3D G3DSA:1.20.1250.20 200 380 7.8E-19 T 12-10-2018 YPK_0120 910e63386c430e9362ac5cab4583bc13 148 PIRSF PIRSF006276 1 141 5.8E-54 T 12-10-2018 IPR006015 Universal stress protein A YPK_0120 910e63386c430e9362ac5cab4583bc13 148 Pfam PF00582 Universal stress protein family 3 138 7.5E-21 T 12-10-2018 IPR006016 UspA YPK_0120 910e63386c430e9362ac5cab4583bc13 148 Gene3D G3DSA:3.40.50.620 2 142 3.7E-51 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YPK_0120 910e63386c430e9362ac5cab4583bc13 148 SUPERFAMILY SSF52402 3 139 1.17E-31 T 12-10-2018 YPK_3191 ce002ef67da1b0ddb1458c081663eb6d 257 SUPERFAMILY SSF53448 1 257 4.8E-67 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3191 ce002ef67da1b0ddb1458c081663eb6d 257 Gene3D G3DSA:3.90.550.10 1 257 3.9E-76 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3191 ce002ef67da1b0ddb1458c081663eb6d 257 Pfam PF00483 Nucleotidyl transferase 2 211 5.7E-19 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 YPK_3191 ce002ef67da1b0ddb1458c081663eb6d 257 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 1 256 1.1E-146 T 12-10-2018 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940 YPK_3166 0d3137168b103d43878cea70806de169 269 Pfam PF01963 TraB family 31 267 7.6E-40 T 12-10-2018 IPR002816 Pheromone shutdown, TraB YPK_2559 e604cec2aa252629252913a2b86928e0 135 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 4 123 24.141 T 12-10-2018 IPR022957 Uncharacterised protein family UPF0299 YPK_2559 e604cec2aa252629252913a2b86928e0 135 Pfam PF03788 LrgA family 23 113 6.0E-29 T 12-10-2018 IPR005538 LrgA/CidA family GO:0016021 YPK_2663 eb4515c949d6a3e22cabb93945f9b3d3 469 Pfam PF07063 Domain of unknown function (DUF1338) 11 415 7.1E-117 T 12-10-2018 IPR009770 Domain of unknown function DUF1338 YPK_2663 eb4515c949d6a3e22cabb93945f9b3d3 469 SMART SM01150 13 415 1.2E-226 T 12-10-2018 IPR009770 Domain of unknown function DUF1338 YPK_2663 eb4515c949d6a3e22cabb93945f9b3d3 469 Gene3D G3DSA:3.10.180.80 4 452 5.1E-187 T 12-10-2018 YPK_2384 46825cb408b772932c6b39f394eeb8a8 120 Gene3D G3DSA:1.20.58.380 2 110 1.7E-33 T 12-10-2018 YPK_2384 46825cb408b772932c6b39f394eeb8a8 120 Pfam PF05400 Flagellar protein FliT 21 106 1.3E-20 T 12-10-2018 IPR008622 Flagellar protein FliT YPK_2384 46825cb408b772932c6b39f394eeb8a8 120 Hamap MF_01180 Flagellar protein FliT [fliT]. 1 120 26.22 T 12-10-2018 IPR008622 Flagellar protein FliT YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 PIRSF PIRSF001013 1 157 1.1E-71 T 12-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 115 134 4.6E-31 T 12-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 54 71 4.6E-31 T 12-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 74 91 4.6E-31 T 12-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 137 155 4.6E-31 T 12-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 PRINTS PR00117 Barnase signature 94 112 4.6E-31 T 12-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 Pfam PF00545 ribonuclease 67 154 1.8E-24 T 12-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 SUPERFAMILY SSF53933 50 156 2.24E-38 T 12-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 YPK_0487 ded49b1facbe96f90a0a85f188d88c58 157 Gene3D G3DSA:3.10.450.30 43 157 6.9E-45 T 12-10-2018 YPK_0672 1d78d371666be2f4a017fe6b76348eb5 345 Pfam PF01618 MotA/TolQ/ExbB proton channel family 197 309 6.5E-35 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel YPK_0672 1d78d371666be2f4a017fe6b76348eb5 345 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 112 323 1.3E-96 T 12-10-2018 IPR014164 TonB-system energizer ExbB type-1 GO:0016020|GO:0022857|GO:0055085 YPK_4023 b074fa787470256b8392c6bcde71eac0 454 Hamap MF_01003 Probable ECA polymerase [wzyE]. 1 447 38.509 T 12-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 YPK_4023 b074fa787470256b8392c6bcde71eac0 454 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 442 7.8E-264 T 12-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 YPK_1648 ac1089de531579c1117c473d576204a7 334 TIGRFAM TIGR02566 cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3 7 333 8.0E-153 T 12-10-2018 IPR013399 CRISPR-associated protein Csy3 YPK_1648 ac1089de531579c1117c473d576204a7 334 Pfam PF09615 CRISPR-associated protein (Cas_Csy3) 8 330 4.2E-150 T 12-10-2018 IPR013399 CRISPR-associated protein Csy3 YPK_3309 debb7e8cc07c89d991bc8bbfd4c1f345 815 Gene3D G3DSA:1.20.140.10 360 507 1.2E-100 T 12-10-2018 YPK_3309 debb7e8cc07c89d991bc8bbfd4c1f345 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 147 233 5.1E-17 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 YPK_3309 debb7e8cc07c89d991bc8bbfd4c1f345 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 360 507 1.1E-10 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 YPK_3309 debb7e8cc07c89d991bc8bbfd4c1f345 815 SUPERFAMILY SSF56645 119 355 7.72E-46 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 YPK_3309 debb7e8cc07c89d991bc8bbfd4c1f345 815 SUPERFAMILY SSF47203 360 507 5.15E-20 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 YPK_3309 debb7e8cc07c89d991bc8bbfd4c1f345 815 Gene3D G3DSA:1.10.540.10 122 235 1.2E-100 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 YPK_3309 debb7e8cc07c89d991bc8bbfd4c1f345 815 Pfam PF09317 Domain of unknown function (DUF1974) 514 792 2.1E-117 T 12-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 YPK_3309 debb7e8cc07c89d991bc8bbfd4c1f345 815 Gene3D G3DSA:2.40.110.10 236 359 1.2E-100 T 12-10-2018 YPK_1345 5be42fe15a4413c7fbfe728a7e04009f 719 SUPERFAMILY SSF161098 409 486 8.24E-6 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1345 5be42fe15a4413c7fbfe728a7e04009f 719 SUPERFAMILY SSF82171 163 380 6.28E-11 T 12-10-2018 YPK_1345 5be42fe15a4413c7fbfe728a7e04009f 719 SUPERFAMILY SSF161098 497 702 6.15E-21 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1345 5be42fe15a4413c7fbfe728a7e04009f 719 Gene3D G3DSA:1.10.3720.10 484 712 3.1E-21 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1345 5be42fe15a4413c7fbfe728a7e04009f 719 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 437 709 8.7E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1915 ef70c414d629867e598b12f2a12ddaf1 219 Pfam PF02308 MgtC family 10 138 2.7E-40 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1915 ef70c414d629867e598b12f2a12ddaf1 219 PRINTS PR01837 MgtC/SapB protein signature 12 31 3.7E-48 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1915 ef70c414d629867e598b12f2a12ddaf1 219 PRINTS PR01837 MgtC/SapB protein signature 65 87 3.7E-48 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1915 ef70c414d629867e598b12f2a12ddaf1 219 PRINTS PR01837 MgtC/SapB protein signature 92 116 3.7E-48 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_1915 ef70c414d629867e598b12f2a12ddaf1 219 PRINTS PR01837 MgtC/SapB protein signature 31 49 3.7E-48 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 YPK_4059 29517221d8a9ea65eea864c3670fab01 308 Gene3D G3DSA:3.30.470.10 9 126 1.8E-111 T 12-10-2018 YPK_4059 29517221d8a9ea65eea864c3670fab01 308 Pfam PF01063 Amino-transferase class IV 35 267 1.3E-48 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 YPK_4059 29517221d8a9ea65eea864c3670fab01 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 306 4.5E-144 T 12-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 YPK_4059 29517221d8a9ea65eea864c3670fab01 308 Gene3D G3DSA:3.20.10.10 137 288 1.8E-111 T 12-10-2018 YPK_4059 29517221d8a9ea65eea864c3670fab01 308 SUPERFAMILY SSF56752 6 306 2.09E-105 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 YPK_4059 29517221d8a9ea65eea864c3670fab01 308 ProSitePatterns PS00770 Aminotransferases class-IV signature. 193 222 - T 12-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 YPK_0697 6430104c82390f8f001d36576aeeb4d2 367 Pfam PF00419 Fimbrial protein 219 366 4.2E-11 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_0697 6430104c82390f8f001d36576aeeb4d2 367 Gene3D G3DSA:2.60.40.1090 219 366 2.7E-24 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_0697 6430104c82390f8f001d36576aeeb4d2 367 SUPERFAMILY SSF49401 222 366 2.39E-19 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_1721 dee16195010e0ca4b91cb0a443b34623 148 PRINTS PR00502 NUDIX hydrolase family signature 45 60 3.2E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_1721 dee16195010e0ca4b91cb0a443b34623 148 PRINTS PR00502 NUDIX hydrolase family signature 31 45 3.2E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_1721 dee16195010e0ca4b91cb0a443b34623 148 Pfam PF00293 NUDIX domain 4 114 8.2E-18 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_1721 dee16195010e0ca4b91cb0a443b34623 148 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_1721 dee16195010e0ca4b91cb0a443b34623 148 Gene3D G3DSA:3.90.79.10 1 148 4.0E-44 T 12-10-2018 YPK_1721 dee16195010e0ca4b91cb0a443b34623 148 SUPERFAMILY SSF55811 2 132 5.42E-30 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_0883 c98c66f321fa91ba49e62e7d15159486 187 Pfam PF16452 Bacteriophage CI repressor C-terminal domain 82 180 8.9E-31 T 12-10-2018 IPR032499 Bacteriophage CI repressor, C-terminal GO:0051259 YPK_0883 c98c66f321fa91ba49e62e7d15159486 187 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 9 73 5.3E-25 T 12-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 YPK_0883 c98c66f321fa91ba49e62e7d15159486 187 Gene3D G3DSA:1.10.260.40 4 74 2.0E-23 T 12-10-2018 YPK_0883 c98c66f321fa91ba49e62e7d15159486 187 Gene3D G3DSA:2.10.109.10 75 187 8.6E-31 T 12-10-2018 YPK_3128 4b7ebdc04999b33f1dca012548f2f472 384 Pfam PF00589 Phage integrase family 185 353 2.8E-39 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 YPK_3128 4b7ebdc04999b33f1dca012548f2f472 384 SUPERFAMILY SSF56349 58 361 7.36E-47 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 YPK_3128 4b7ebdc04999b33f1dca012548f2f472 384 Gene3D G3DSA:1.10.443.10 185 373 5.5E-34 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 YPK_3128 4b7ebdc04999b33f1dca012548f2f472 384 Gene3D G3DSA:1.10.150.130 54 184 2.1E-8 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal YPK_0990 ee9d56fd5dd9420fbc91abd59445dc26 296 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 36 295 3.1E-80 T 12-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 YPK_1646 9c5d53c3bee204eaffa807e64e6bfe5a 448 Pfam PF09611 CRISPR-associated protein (Cas_Csy1) 59 429 3.3E-135 T 12-10-2018 IPR013397 CRISPR-associated protein Csy1 YPK_1646 9c5d53c3bee204eaffa807e64e6bfe5a 448 TIGRFAM TIGR02564 cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1 58 436 2.4E-160 T 12-10-2018 IPR013397 CRISPR-associated protein Csy1 YPK_3043 4e3c38fba62c39dd5f3abff8a16e2836 342 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 329 1.1E-50 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_3525 ae08b8903dfa75169799b847bc7ab2df 105 Pfam PF04999 Cell division protein FtsL 11 104 3.5E-34 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 YPK_3525 ae08b8903dfa75169799b847bc7ab2df 105 Hamap MF_00910 Cell division protein FtsL [ftsL]. 20 103 17.014 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 YPK_3525 ae08b8903dfa75169799b847bc7ab2df 105 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 22 103 7.2E-28 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 YPK_4179 623cbc260f12bd2212df51078cd9e2e9 219 Pfam PF00588 SpoU rRNA Methylase family 9 148 6.0E-36 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 YPK_4179 623cbc260f12bd2212df51078cd9e2e9 219 Pfam PF12105 SpoU, rRNA methylase, C-terminal 152 207 7.8E-25 T 12-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 YPK_4179 623cbc260f12bd2212df51078cd9e2e9 219 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 1 186 31.938 T 12-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 YPK_4179 623cbc260f12bd2212df51078cd9e2e9 219 SUPERFAMILY SSF75217 3 163 7.19E-49 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases YPK_4179 623cbc260f12bd2212df51078cd9e2e9 219 Gene3D G3DSA:3.40.1280.10 1 179 5.9E-60 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YPK_4025 52c1fce74f996367444aa2a97008bee5 418 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 39.667 T 12-10-2018 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 YPK_4025 52c1fce74f996367444aa2a97008bee5 418 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 4.3E-10 T 12-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 YPK_0713 b3776ec712a88a75736fd58ccba700d6 238 Pfam PF09811 Essential protein Yae1, N terminal 49 86 1.9E-9 T 12-10-2018 IPR019191 Essential protein Yae1, N-terminal YPK_0713 b3776ec712a88a75736fd58ccba700d6 238 Pfam PF02108 Flagellar assembly protein FliH 100 223 5.9E-30 T 12-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE YPK_1875 668b37b427ecda904b6edcb3c8427209 298 Gene3D G3DSA:3.20.20.100 1 298 6.7E-107 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_1875 668b37b427ecda904b6edcb3c8427209 298 Pfam PF00248 Aldo/keto reductase family 17 291 7.3E-61 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain YPK_1875 668b37b427ecda904b6edcb3c8427209 298 PRINTS PR00069 Aldo-keto reductase signature 225 249 3.0E-8 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1875 668b37b427ecda904b6edcb3c8427209 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 3.0E-8 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1875 668b37b427ecda904b6edcb3c8427209 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 3.0E-8 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 YPK_1875 668b37b427ecda904b6edcb3c8427209 298 SUPERFAMILY SSF51430 8 295 1.83E-72 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily YPK_2256 da587c1e53b3a011a6ab4d0d6877d134 509 PIRSF PIRSF006060 20 484 1.2E-62 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 YPK_2256 da587c1e53b3a011a6ab4d0d6877d134 509 ProSitePatterns PS00218 Amino acid permeases signature. 59 89 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 YPK_2256 da587c1e53b3a011a6ab4d0d6877d134 509 Pfam PF00324 Amino acid permease 34 472 3.3E-121 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 YPK_2256 da587c1e53b3a011a6ab4d0d6877d134 509 Gene3D G3DSA:1.20.1740.10 26 482 3.3E-62 T 12-10-2018 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 Pfam PF00293 NUDIX domain 5 134 4.9E-18 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 Gene3D G3DSA:3.90.79.10 1 147 3.5E-43 T 12-10-2018 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 3 20 5.8E-47 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 71 90 5.8E-47 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 126 139 5.8E-47 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 20 41 5.8E-47 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 99 120 5.8E-47 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 YPK_2147 d3a60a23694ae1421be1fe7d6ec68548 147 SUPERFAMILY SSF55811 2 144 4.2E-25 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_2750 afa58f0ebc8cdbbac642fd1e7d90082d 360 Gene3D G3DSA:1.10.3470.10 27 359 3.4E-97 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2750 afa58f0ebc8cdbbac642fd1e7d90082d 360 Pfam PF01032 FecCD transport family 42 355 1.4E-84 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_2750 afa58f0ebc8cdbbac642fd1e7d90082d 360 SUPERFAMILY SSF81345 24 355 2.88E-78 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2372 c4ce22edc12fb411d74c63a19e90455c 123 Gene3D G3DSA:1.10.10.10 39 115 2.9E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2372 c4ce22edc12fb411d74c63a19e90455c 123 SUPERFAMILY SSF46785 49 101 8.86E-7 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_4131 d51b23831703fcf0a70c52f3025c4843 162 PIRSF PIRSF034445 1 152 6.9E-33 T 12-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 YPK_4131 d51b23831703fcf0a70c52f3025c4843 162 Gene3D G3DSA:1.20.120.1490 47 155 4.7E-40 T 12-10-2018 YPK_4131 d51b23831703fcf0a70c52f3025c4843 162 Pfam PF07813 LTXXQ motif family protein 45 142 2.5E-23 T 12-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 YPK_1298 6c9cc5766dbdec78b26edfc2a0cb6d4c 318 Gene3D G3DSA:1.20.1530.20 164 316 2.1E-5 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily YPK_1298 6c9cc5766dbdec78b26edfc2a0cb6d4c 318 Pfam PF03547 Membrane transport protein 14 150 1.7E-8 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 YPK_1298 6c9cc5766dbdec78b26edfc2a0cb6d4c 318 Pfam PF03547 Membrane transport protein 169 307 3.9E-10 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 YPK_1192 f60955457479d11cf1eaf8cca5bedab0 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 3.2E-104 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 YPK_1192 f60955457479d11cf1eaf8cca5bedab0 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 132.374 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 YPK_1192 f60955457479d11cf1eaf8cca5bedab0 243 SUPERFAMILY SSF63892 4 242 3.27E-100 T 12-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 YPK_1192 f60955457479d11cf1eaf8cca5bedab0 243 Gene3D G3DSA:3.20.20.70 1 243 1.2E-108 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_1192 f60955457479d11cf1eaf8cca5bedab0 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 2.9E-102 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 YPK_4143 81167ce87ba7b13d9a8389791cc4656d 336 Pfam PF04748 Divergent polysaccharide deacetylase 28 238 6.7E-79 T 12-10-2018 IPR006837 Divergent polysaccharide deacetylase YPK_4143 81167ce87ba7b13d9a8389791cc4656d 336 Gene3D G3DSA:3.20.20.370 22 239 7.4E-76 T 12-10-2018 YPK_4143 81167ce87ba7b13d9a8389791cc4656d 336 SUPERFAMILY SSF88713 24 238 6.23E-74 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YPK_2652 2fc00771aa9aa904ce9578b54beb907f 215 Gene3D G3DSA:3.60.15.10 1 210 2.9E-86 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2652 2fc00771aa9aa904ce9578b54beb907f 215 SUPERFAMILY SSF56281 2 209 4.32E-61 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like YPK_2652 2fc00771aa9aa904ce9578b54beb907f 215 SMART SM00849 12 192 5.6E-44 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_2652 2fc00771aa9aa904ce9578b54beb907f 215 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 1.2E-32 T 12-10-2018 IPR001279 Metallo-beta-lactamase YPK_3158 601cd673405fd2c06a9527478ae821ab 228 Pfam PF00005 ABC transporter 27 174 6.8E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3158 601cd673405fd2c06a9527478ae821ab 228 SUPERFAMILY SSF52540 6 227 5.82E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3158 601cd673405fd2c06a9527478ae821ab 228 Gene3D G3DSA:3.40.50.300 4 228 5.1E-62 T 12-10-2018 YPK_3158 601cd673405fd2c06a9527478ae821ab 228 SMART SM00382 35 223 1.5E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3158 601cd673405fd2c06a9527478ae821ab 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3398 24b75ceeaa71560ded6b9b438ce42889 335 Pfam PF13407 Periplasmic binding protein domain 38 293 7.4E-52 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_3398 24b75ceeaa71560ded6b9b438ce42889 335 SUPERFAMILY SSF53822 33 304 5.42E-63 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_3398 24b75ceeaa71560ded6b9b438ce42889 335 Gene3D G3DSA:3.40.50.2300 136 273 5.8E-84 T 12-10-2018 YPK_3398 24b75ceeaa71560ded6b9b438ce42889 335 Gene3D G3DSA:3.40.50.2300 39 305 5.8E-84 T 12-10-2018 YPK_2461 6244726f58d9cdc11416b4ebc4c794bb 210 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 5 203 1.9E-31 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 YPK_2461 6244726f58d9cdc11416b4ebc4c794bb 210 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 3 203 5.0E-71 T 12-10-2018 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 YPK_2461 6244726f58d9cdc11416b4ebc4c794bb 210 Gene3D G3DSA:3.90.850.10 1 208 4.6E-45 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_2461 6244726f58d9cdc11416b4ebc4c794bb 210 SUPERFAMILY SSF56529 2 204 3.01E-51 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 YPK_3298 dc87ff17e4cb656d9527b16afe02a46d 75 Pfam PF04400 (Na+)-NQR maturation NqrM 23 65 1.7E-22 T 12-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM YPK_2808 69a3c5edec1b44f1799064d22f8b20b0 139 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 27 139 1.8E-21 T 12-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_1046 fd360fe52c9479e642b2ff8745ce9882 416 Gene3D G3DSA:3.40.630.40 175 415 1.5E-89 T 12-10-2018 YPK_1046 fd360fe52c9479e642b2ff8745ce9882 416 SMART SM00646 250 404 8.0E-65 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 YPK_1046 fd360fe52c9479e642b2ff8745ce9882 416 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 190 404 6.7E-52 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 YPK_1046 fd360fe52c9479e642b2ff8745ce9882 416 SUPERFAMILY SSF53187 188 407 4.39E-54 T 12-10-2018 YPK_1046 fd360fe52c9479e642b2ff8745ce9882 416 Pfam PF11741 AMIN domain 39 142 2.1E-27 T 12-10-2018 IPR021731 AMIN domain YPK_1046 fd360fe52c9479e642b2ff8745ce9882 416 Gene3D G3DSA:2.60.40.3500 25 145 6.7E-34 T 12-10-2018 YPK_0256 9140e549e62624487f2355e5307ffc62 326 PIRSF PIRSF005211 1 326 3.4E-104 T 12-10-2018 IPR012020 AB hydrolase 4 family YPK_0256 9140e549e62624487f2355e5307ffc62 326 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 226 267 - T 12-10-2018 IPR000952 AB hydrolase 4, conserved site YPK_0256 9140e549e62624487f2355e5307ffc62 326 SUPERFAMILY SSF53474 28 302 1.88E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0256 9140e549e62624487f2355e5307ffc62 326 Pfam PF00561 alpha/beta hydrolase fold 60 298 1.5E-20 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_1470 6eedc305a050061258aef0d0b6440408 343 Pfam PF00419 Fimbrial protein 201 342 2.5E-15 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_1470 6eedc305a050061258aef0d0b6440408 343 Gene3D G3DSA:2.60.40.1090 206 341 5.7E-10 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_1470 6eedc305a050061258aef0d0b6440408 343 SUPERFAMILY SSF49401 207 340 4.97E-18 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 PIRSF PIRSF005419 2 697 1.1E-216 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 Gene3D G3DSA:3.40.30.60 359 502 1.1E-43 T 12-10-2018 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 142 165 - T 12-10-2018 IPR025505 FHIPEP conserved site YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 Gene3D G3DSA:1.10.8.540 503 590 4.0E-13 T 12-10-2018 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 Pfam PF00771 FHIPEP family 26 688 7.8E-233 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 Gene3D G3DSA:1.10.490.80 593 696 1.7E-10 T 12-10-2018 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 33 46 8.6E-54 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 137 153 8.6E-54 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 186 203 8.6E-54 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 156 174 8.6E-54 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 237 251 8.6E-54 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_0702 70a5cf3d1ec0b2ed69e7357a3526786c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 70 89 8.6E-54 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 YPK_0079 20fcd76036fbbe3a42dfc359870c56ed 487 Pfam PF12146 Serine aminopeptidase, S33 118 237 1.7E-10 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 YPK_0079 20fcd76036fbbe3a42dfc359870c56ed 487 Gene3D G3DSA:3.40.50.1820 107 347 1.4E-29 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0079 20fcd76036fbbe3a42dfc359870c56ed 487 SUPERFAMILY SSF53474 74 342 1.91E-25 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1113 4cd1627d6603c9d838b47499ef9fe868 334 SUPERFAMILY SSF53850 25 324 1.66E-92 T 12-10-2018 YPK_1113 4cd1627d6603c9d838b47499ef9fe868 334 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 311 4.6E-52 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 YPK_1113 4cd1627d6603c9d838b47499ef9fe868 334 Gene3D G3DSA:3.40.190.100 113 252 7.2E-138 T 12-10-2018 YPK_1113 4cd1627d6603c9d838b47499ef9fe868 334 Gene3D G3DSA:3.40.190.10 26 324 7.2E-138 T 12-10-2018 YPK_3941 fe5c716568432405330010e0663f7eec 220 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 140 19.365 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 YPK_3941 fe5c716568432405330010e0663f7eec 220 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 2.6E-32 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 YPK_3941 fe5c716568432405330010e0663f7eec 220 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 2.2E-32 T 12-10-2018 YPK_3941 fe5c716568432405330010e0663f7eec 220 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 2.2E-32 T 12-10-2018 YPK_3941 fe5c716568432405330010e0663f7eec 220 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 2.2E-32 T 12-10-2018 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 SUPERFAMILY SSF55174 17 69 1.48E-11 T 12-10-2018 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 Pfam PF00849 RNA pseudouridylate synthase 92 242 4.5E-32 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 SMART SM00363 18 83 1.5E-12 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 SUPERFAMILY SSF55120 77 321 2.67E-79 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 Pfam PF01479 S4 domain 18 65 1.0E-11 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 Gene3D G3DSA:3.10.290.10 2 76 9.6E-26 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 313 3.1E-107 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 YPK_3351 c0955edf2da0b8fc74111682a0a21c77 325 Gene3D G3DSA:3.30.2350.10 85 316 3.3E-71 T 12-10-2018 YPK_0456 090875b31b9f68ca704d3d79328ba8dc 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 79 2.0E-39 T 12-10-2018 IPR010398 Protein of unknown function DUF997 YPK_0456 090875b31b9f68ca704d3d79328ba8dc 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 5.8E-30 T 12-10-2018 IPR010398 Protein of unknown function DUF997 YPK_0102 67b1061026b728e824b8d1b851256f06 66 SUPERFAMILY SSF55331 2 64 3.38E-23 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily YPK_0102 67b1061026b728e824b8d1b851256f06 66 Pfam PF01361 Tautomerase enzyme 2 61 2.4E-24 T 12-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 YPK_0102 67b1061026b728e824b8d1b851256f06 66 Gene3D G3DSA:3.30.429.10 2 65 6.4E-27 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily YPK_0102 67b1061026b728e824b8d1b851256f06 66 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 64 3.5E-30 T 12-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 YPK_3496 b4d6a2d59942a2ee4c8c0157da5c70ed 183 Gene3D G3DSA:3.40.80.10 1 180 1.7E-55 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_3496 b4d6a2d59942a2ee4c8c0157da5c70ed 183 SUPERFAMILY SSF55846 2 181 4.45E-66 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_3496 b4d6a2d59942a2ee4c8c0157da5c70ed 183 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 30 166 3.1E-26 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_3496 b4d6a2d59942a2ee4c8c0157da5c70ed 183 SMART SM00644 16 166 1.4E-51 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 YPK_3666 f249a0f8c5a3363586173906af778b2e 881 Gene3D G3DSA:3.90.1570.50 1 67 1.2E-10 T 12-10-2018 YPK_3666 f249a0f8c5a3363586173906af778b2e 881 SMART SM00487 66 280 1.3E-10 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain YPK_3666 f249a0f8c5a3363586173906af778b2e 881 SUPERFAMILY SSF52540 106 569 3.19E-5 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3666 f249a0f8c5a3363586173906af778b2e 881 SUPERFAMILY SSF52540 16 261 9.44E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3666 f249a0f8c5a3363586173906af778b2e 881 Pfam PF12008 Type I restriction and modification enzyme - subunit R C terminal 570 856 4.0E-36 T 12-10-2018 IPR022625 Type-1 restriction enzyme R protein, C-terminal YPK_3666 f249a0f8c5a3363586173906af778b2e 881 Pfam PF04851 Type III restriction enzyme, res subunit 69 255 2.9E-27 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 YPK_3666 f249a0f8c5a3363586173906af778b2e 881 Gene3D G3DSA:3.40.50.300 331 573 3.3E-54 T 12-10-2018 YPK_3666 f249a0f8c5a3363586173906af778b2e 881 Gene3D G3DSA:3.40.50.300 69 277 2.7E-60 T 12-10-2018 YPK_2100 a3f01e457c7ce8d2aca2a346e35c852e 644 SMART SM00763 19 380 2.1E-216 T 12-10-2018 IPR013153 PrkA AAA domain YPK_2100 a3f01e457c7ce8d2aca2a346e35c852e 644 PIRSF PIRSF000549 1 644 1.0E-285 T 12-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 YPK_2100 a3f01e457c7ce8d2aca2a346e35c852e 644 SUPERFAMILY SSF52540 75 368 6.05E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_2100 a3f01e457c7ce8d2aca2a346e35c852e 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 1.3E-72 T 12-10-2018 IPR010650 PrkA C-terminal domain YPK_2100 a3f01e457c7ce8d2aca2a346e35c852e 644 Pfam PF08298 PrkA AAA domain 20 380 3.2E-175 T 12-10-2018 IPR013153 PrkA AAA domain YPK_0642 bb4c81410d04d2e9b8eecb0977b1855e 206 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 204 1.3E-52 T 12-10-2018 IPR016476 SH3 domain protein YPK_0642 bb4c81410d04d2e9b8eecb0977b1855e 206 Gene3D G3DSA:2.30.30.40 21 88 5.3E-7 T 12-10-2018 YPK_0642 bb4c81410d04d2e9b8eecb0977b1855e 206 Pfam PF08239 Bacterial SH3 domain 34 81 8.9E-9 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type YPK_0642 bb4c81410d04d2e9b8eecb0977b1855e 206 PIRSF PIRSF006158 1 205 2.4E-69 T 12-10-2018 IPR016476 SH3 domain protein YPK_0642 bb4c81410d04d2e9b8eecb0977b1855e 206 SMART SM00287 23 89 5.7E-12 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type YPK_0254 7f10256aa05658e9aad314bec0fe9476 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 1.5E-73 T 12-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 YPK_0254 7f10256aa05658e9aad314bec0fe9476 289 SUPERFAMILY SSF52540 4 286 1.7E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0254 7f10256aa05658e9aad314bec0fe9476 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 6.0E-29 T 12-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YPK_0254 7f10256aa05658e9aad314bec0fe9476 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 6.0E-29 T 12-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YPK_0254 7f10256aa05658e9aad314bec0fe9476 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 6.0E-29 T 12-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YPK_0254 7f10256aa05658e9aad314bec0fe9476 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 6.0E-29 T 12-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YPK_0254 7f10256aa05658e9aad314bec0fe9476 289 Gene3D G3DSA:3.40.50.300 1 289 2.5E-115 T 12-10-2018 YPK_0254 7f10256aa05658e9aad314bec0fe9476 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 164 177 - T 12-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 YPK_0637 00235c745d8298a44729e9f9ec274d28 337 Gene3D G3DSA:3.30.420.40 3 314 2.0E-132 T 12-10-2018 YPK_0637 00235c745d8298a44729e9f9ec274d28 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 4.1E-126 T 12-10-2018 IPR017861 Kae1/TsaD family YPK_0637 00235c745d8298a44729e9f9ec274d28 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 12-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 YPK_0637 00235c745d8298a44729e9f9ec274d28 337 SUPERFAMILY SSF53067 1 309 3.74E-43 T 12-10-2018 YPK_0637 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.5E-52 T 12-10-2018 IPR017861 Kae1/TsaD family YPK_0637 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 1.5E-52 T 12-10-2018 IPR017861 Kae1/TsaD family YPK_0637 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.5E-52 T 12-10-2018 IPR017861 Kae1/TsaD family YPK_0637 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.5E-52 T 12-10-2018 IPR017861 Kae1/TsaD family YPK_0637 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.5E-52 T 12-10-2018 IPR017861 Kae1/TsaD family YPK_0637 00235c745d8298a44729e9f9ec274d28 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.5E-52 T 12-10-2018 IPR017861 Kae1/TsaD family YPK_0637 00235c745d8298a44729e9f9ec274d28 337 Pfam PF00814 Glycoprotease family 24 307 1.0E-102 T 12-10-2018 IPR000905 Gcp-like domain YPK_0637 00235c745d8298a44729e9f9ec274d28 337 Gene3D G3DSA:3.30.420.40 129 293 2.0E-132 T 12-10-2018 YPK_0637 00235c745d8298a44729e9f9ec274d28 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.249 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 YPK_0637 00235c745d8298a44729e9f9ec274d28 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 7.6E-135 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 YPK_1015 537554a14711f65412ae73b68c804fdb 121 Gene3D G3DSA:1.20.58.1630 28 121 2.4E-27 T 12-10-2018 IPR038432 PulS/OutS-like superfamily YPK_1015 537554a14711f65412ae73b68c804fdb 121 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 17 117 3.3E-20 T 12-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like YPK_2921 7e2f371d3a03538eb641ceed4b94738e 159 Gene3D G3DSA:3.30.70.640 1 159 2.2E-70 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2921 7e2f371d3a03538eb641ceed4b94738e 159 Pfam PF01967 MoaC family 15 150 1.4E-54 T 12-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2921 7e2f371d3a03538eb641ceed4b94738e 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 7.0E-71 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2921 7e2f371d3a03538eb641ceed4b94738e 159 SUPERFAMILY SSF55040 11 155 6.93E-61 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_2921 7e2f371d3a03538eb641ceed4b94738e 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 36.113 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 YPK_1159 a3b3ccb24cc1bedbf4174b71a16c659e 562 Pfam PF03814 Potassium-transporting ATPase A subunit 12 556 7.3E-242 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 YPK_1159 a3b3ccb24cc1bedbf4174b71a16c659e 562 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 557 3.3E-262 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 YPK_1159 a3b3ccb24cc1bedbf4174b71a16c659e 562 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 558 35.334 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 YPK_1159 a3b3ccb24cc1bedbf4174b71a16c659e 562 PIRSF PIRSF001294 1 560 2.5E-239 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 YPK_3115 9ceab7750790bb9bee69f7cdffb56a36 197 PIRSF PIRSF012337 3 195 2.9E-52 T 12-10-2018 IPR014462 Phage-associated protein Gp45 YPK_3115 9ceab7750790bb9bee69f7cdffb56a36 197 Pfam PF06890 Bacteriophage Mu Gp45 protein 20 175 1.7E-44 T 12-10-2018 IPR014462 Phage-associated protein Gp45 YPK_3115 9ceab7750790bb9bee69f7cdffb56a36 197 Gene3D G3DSA:2.20.25.540 84 145 6.7E-6 T 12-10-2018 YPK_1884 d9d73f2f3a8fb224dd8350383e4f796a 87 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 1 87 5.0E-44 T 12-10-2018 IPR020317 Uncharacterised protein family YjbD YPK_1884 d9d73f2f3a8fb224dd8350383e4f796a 87 Pfam PF11656 YjbD family (DUF3811) 1 87 2.7E-39 T 12-10-2018 IPR020317 Uncharacterised protein family YjbD YPK_1398 e8aaf3cfbb997d1931b5a7516be4e5b9 203 Gene3D G3DSA:2.60.460.10 33 200 1.7E-65 T 12-10-2018 IPR038714 YfeY-like superfamily YPK_1398 e8aaf3cfbb997d1931b5a7516be4e5b9 203 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 24 199 6.0E-101 T 12-10-2018 IPR010938 Protein of unknown function DUF1131 YPK_1398 e8aaf3cfbb997d1931b5a7516be4e5b9 203 Pfam PF06572 Protein of unknown function (DUF1131) 30 199 2.2E-83 T 12-10-2018 IPR010938 Protein of unknown function DUF1131 YPK_3709 e8fd8dfe44d1c21e0f23de6c60ea67d9 437 Pfam PF01547 Bacterial extracellular solute-binding protein 45 340 4.8E-36 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_3709 e8fd8dfe44d1c21e0f23de6c60ea67d9 437 Gene3D G3DSA:3.40.190.10 31 434 2.3E-75 T 12-10-2018 YPK_3709 e8fd8dfe44d1c21e0f23de6c60ea67d9 437 SUPERFAMILY SSF53850 32 432 1.74E-79 T 12-10-2018 YPK_2347 a8ff6412cf201efe8d8e715776d0b1aa 391 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 110 275 1.3E-32 T 12-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain YPK_2347 a8ff6412cf201efe8d8e715776d0b1aa 391 Pfam PF17482 Phage tail sheath C-terminal domain 276 378 2.9E-18 T 12-10-2018 IPR020287 Tail sheath protein, C-terminal domain YPK_2170 ac9ace51bea95333ab157c10f119dcb7 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 262 1.3E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2170 ac9ace51bea95333ab157c10f119dcb7 278 SUPERFAMILY SSF161098 8 270 1.83E-53 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2170 ac9ace51bea95333ab157c10f119dcb7 278 Gene3D G3DSA:1.10.3720.10 3 264 7.1E-45 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1493 0f4f7af205ac6cc6beac643efbb62163 679 Pfam PF09972 Predicted membrane protein (DUF2207) 52 607 2.4E-68 T 12-10-2018 IPR018702 Protein of unknown function DUF2207, membrane YPK_3922 8f293858e06a2914bfd0dd76561ef50d 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 4.9E-34 T 12-10-2018 IPR007436 Protein of unknown function DUF485 YPK_2964 082cb72adc2e2ac294aac9c2a69a8cd7 522 PIRSF PIRSF006446 1 521 1.2E-140 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 YPK_2964 082cb72adc2e2ac294aac9c2a69a8cd7 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 5.5E-173 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 YPK_2975 6574c11a96fda49b184af57141908999 255 Gene3D G3DSA:3.40.50.10330 1 250 2.6E-95 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 YPK_2975 6574c11a96fda49b184af57141908999 255 Hamap MF_00361 NAD kinase [nadK]. 4 250 31.103 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 YPK_2975 6574c11a96fda49b184af57141908999 255 Gene3D G3DSA:2.60.200.30 91 227 2.6E-95 T 12-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 YPK_2975 6574c11a96fda49b184af57141908999 255 SUPERFAMILY SSF111331 15 252 2.62E-87 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily YPK_2975 6574c11a96fda49b184af57141908999 255 Pfam PF01513 ATP-NAD kinase 19 234 1.8E-71 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 YPK_4032 c5471b9ad4e9483d2e0d453bbbc119d0 358 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 15 355 56.857 T 12-10-2018 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 YPK_4032 c5471b9ad4e9483d2e0d453bbbc119d0 358 SUPERFAMILY SSF160355 61 326 6.15E-83 T 12-10-2018 YPK_4032 c5471b9ad4e9483d2e0d453bbbc119d0 358 Pfam PF02706 Chain length determinant protein 22 78 1.6E-13 T 12-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 YPK_2785 86bf027407e470d64bef10768a9b4ad4 526 Pfam PF00563 EAL domain 272 505 4.4E-65 T 12-10-2018 IPR001633 EAL domain YPK_2785 86bf027407e470d64bef10768a9b4ad4 526 Gene3D G3DSA:3.20.20.450 265 523 2.0E-75 T 12-10-2018 IPR035919 EAL domain superfamily YPK_2785 86bf027407e470d64bef10768a9b4ad4 526 SMART SM00052 265 510 2.4E-83 T 12-10-2018 IPR001633 EAL domain YPK_2785 86bf027407e470d64bef10768a9b4ad4 526 Pfam PF12792 CSS motif domain associated with EAL 46 233 1.1E-32 T 12-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain YPK_2785 86bf027407e470d64bef10768a9b4ad4 526 SUPERFAMILY SSF141868 271 518 6.54E-72 T 12-10-2018 IPR035919 EAL domain superfamily YPK_3914 b782d5b08c98f3057a93577ae8222cf5 235 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 215 231 4.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3914 b782d5b08c98f3057a93577ae8222cf5 235 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 200 215 4.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 YPK_3914 b782d5b08c98f3057a93577ae8222cf5 235 Gene3D G3DSA:1.10.10.60 131 233 1.3E-25 T 12-10-2018 YPK_3914 b782d5b08c98f3057a93577ae8222cf5 235 Pfam PF12833 Helix-turn-helix domain 154 231 1.4E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_3914 b782d5b08c98f3057a93577ae8222cf5 235 SUPERFAMILY SSF46689 185 232 4.17E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_3914 b782d5b08c98f3057a93577ae8222cf5 235 SMART SM00342 148 231 5.6E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 YPK_0750 0b63e6e4a434277a822b4d5c672a52c6 690 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 150 6.8E-16 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain YPK_0750 0b63e6e4a434277a822b4d5c672a52c6 690 SUPERFAMILY SSF56935 31 690 5.8E-119 T 12-10-2018 YPK_0750 0b63e6e4a434277a822b4d5c672a52c6 690 Gene3D G3DSA:2.40.170.20 39 690 4.8E-154 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily YPK_0750 0b63e6e4a434277a822b4d5c672a52c6 690 Pfam PF00593 TonB dependent receptor 225 689 2.9E-40 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel YPK_0296 d1e71548dbace9030783e0f6be326d92 101 Gene3D G3DSA:4.10.830.10 41 101 1.5E-23 T 12-10-2018 YPK_0296 d1e71548dbace9030783e0f6be326d92 101 SUPERFAMILY SSF57716 2 101 1.14E-36 T 12-10-2018 YPK_0296 d1e71548dbace9030783e0f6be326d92 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 12-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 YPK_0296 d1e71548dbace9030783e0f6be326d92 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.8E-26 T 12-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 YPK_0296 d1e71548dbace9030783e0f6be326d92 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.761 T 12-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid YPK_1218 b6796a4494de3d8b54e3e33497c46bbf 131 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 58 124 9.2E-17 T 12-10-2018 IPR039561 Peptidase M15C GO:0008233 YPK_1218 b6796a4494de3d8b54e3e33497c46bbf 131 SUPERFAMILY SSF55166 5 125 2.94E-25 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_1218 b6796a4494de3d8b54e3e33497c46bbf 131 Gene3D G3DSA:3.30.1380.10 4 124 1.7E-22 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 YPK_4219 671f1d6ac4dff2c4555e30eac6cc0319 127 Pfam PF03899 ATP synthase I chain 13 109 2.9E-18 T 12-10-2018 IPR005598 ATP synthase protein I YPK_2989 c501220ea87ba14bcd81957c49e79617 95 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 88 6.7E-8 T 12-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 YPK_3180 5dd31f97a3855df2aba19964353227a4 249 Gene3D G3DSA:3.90.550.10 1 242 5.7E-52 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_3180 5dd31f97a3855df2aba19964353227a4 249 Pfam PF00535 Glycosyl transferase family 2 4 147 4.7E-27 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YPK_3180 5dd31f97a3855df2aba19964353227a4 249 SUPERFAMILY SSF53448 2 219 8.28E-49 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_0545 5c026f872b7bbd6a31f1466faa100f7e 94 Pfam PF13997 YqjK-like protein 13 85 7.6E-30 T 12-10-2018 IPR025612 YqjK-like protein YPK_0345 a2010103e74a982cba6b0886b6afa5d1 265 Gene3D G3DSA:3.40.50.720 7 264 1.0E-93 T 12-10-2018 YPK_0345 a2010103e74a982cba6b0886b6afa5d1 265 SUPERFAMILY SSF69572 5 263 1.2E-79 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 YPK_0345 a2010103e74a982cba6b0886b6afa5d1 265 Pfam PF00899 ThiF family 15 258 7.8E-62 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 YPK_2813 8a07dea23a2542567c39b7448c57f846 198 PIRSF PIRSF012337 1 196 1.2E-62 T 12-10-2018 IPR014462 Phage-associated protein Gp45 YPK_2813 8a07dea23a2542567c39b7448c57f846 198 Pfam PF06890 Bacteriophage Mu Gp45 protein 21 176 8.3E-45 T 12-10-2018 IPR014462 Phage-associated protein Gp45 YPK_0951 429cd8bf104bf7c4c20d5cd6dfb6c7a9 380 SUPERFAMILY SSF140931 87 270 1.31E-31 T 12-10-2018 IPR036597 Fido-like domain superfamily YPK_0951 429cd8bf104bf7c4c20d5cd6dfb6c7a9 380 Pfam PF02661 Fic/DOC family 110 210 5.9E-19 T 12-10-2018 IPR003812 Fido domain YPK_0951 429cd8bf104bf7c4c20d5cd6dfb6c7a9 380 Gene3D G3DSA:1.10.3290.10 28 277 5.4E-51 T 12-10-2018 IPR036597 Fido-like domain superfamily YPK_1291 cf1fbb1b451a6fd9f14df8d34aa72268 249 SUPERFAMILY SSF48452 37 193 2.94E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1291 cf1fbb1b451a6fd9f14df8d34aa72268 249 Gene3D G3DSA:1.25.40.10 32 247 2.0E-40 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1291 cf1fbb1b451a6fd9f14df8d34aa72268 249 Pfam PF13181 Tetratricopeptide repeat 36 66 1.2E-5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_1291 cf1fbb1b451a6fd9f14df8d34aa72268 249 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 10 236 1.5E-81 T 12-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW YPK_1291 cf1fbb1b451a6fd9f14df8d34aa72268 249 Pfam PF13431 Tetratricopeptide repeat 90 122 1.6E-5 T 12-10-2018 YPK_1291 cf1fbb1b451a6fd9f14df8d34aa72268 249 SMART SM00028 33 66 0.001 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_1291 cf1fbb1b451a6fd9f14df8d34aa72268 249 SMART SM00028 67 100 14.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_1291 cf1fbb1b451a6fd9f14df8d34aa72268 249 SMART SM00028 137 170 7.7 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 YPK_0477 e2b0887e5ba25c7810335f2adef5db76 100 Pfam PF16083 LydA holin phage, holin superfamily III 15 92 1.9E-25 T 12-10-2018 IPR032126 LydA-like holin YPK_3682 bcfb783d82b9283c64c7028311138c60 167 SUPERFAMILY SSF55729 9 167 1.03E-29 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_3682 bcfb783d82b9283c64c7028311138c60 167 Pfam PF00583 Acetyltransferase (GNAT) family 44 144 9.5E-14 T 12-10-2018 IPR000182 GNAT domain YPK_3682 bcfb783d82b9283c64c7028311138c60 167 Gene3D G3DSA:3.40.630.30 14 153 3.5E-25 T 12-10-2018 YPK_1595 42f2c3f0345699187100f46055d36477 86 Gene3D G3DSA:3.30.1660.10 22 86 9.6E-18 T 12-10-2018 IPR025543 Dodecin-like YPK_1595 42f2c3f0345699187100f46055d36477 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 86 5.0E-19 T 12-10-2018 IPR010854 Domain of unknown function DUF1471 YPK_1595 42f2c3f0345699187100f46055d36477 86 SUPERFAMILY SSF159871 3 86 3.4E-26 T 12-10-2018 IPR036275 YdgH-like superfamily YPK_2086 20b52da652f96112cd05929ed2250354 128 PRINTS PR00502 NUDIX hydrolase family signature 44 59 3.4E-8 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_2086 20b52da652f96112cd05929ed2250354 128 PRINTS PR00502 NUDIX hydrolase family signature 30 44 3.4E-8 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 YPK_2086 20b52da652f96112cd05929ed2250354 128 Gene3D G3DSA:3.90.79.10 1 128 4.3E-36 T 12-10-2018 YPK_2086 20b52da652f96112cd05929ed2250354 128 Pfam PF00293 NUDIX domain 4 120 4.2E-17 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 YPK_2086 20b52da652f96112cd05929ed2250354 128 SUPERFAMILY SSF55811 3 124 3.38E-32 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 YPK_2086 20b52da652f96112cd05929ed2250354 128 ProSitePatterns PS00893 Nudix box signature. 35 56 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 YPK_1388 a63b8f352b59e170a196b0a5b7e006de 155 PIRSF PIRSF006105 9 155 2.6E-52 T 12-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YPK_1388 a63b8f352b59e170a196b0a5b7e006de 155 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 42 148 1.2E-45 T 12-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB YPK_1388 a63b8f352b59e170a196b0a5b7e006de 155 Gene3D G3DSA:1.10.1130.10 68 135 1.0E-28 T 12-10-2018 YPK_1388 a63b8f352b59e170a196b0a5b7e006de 155 SUPERFAMILY SSF48695 54 150 7.49E-41 T 12-10-2018 IPR036280 Multiheme cytochrome superfamily YPK_1404 cc0749ec25efa5be29dd6fef9f9db834 290 Gene3D G3DSA:3.30.420.40 119 270 8.4E-79 T 12-10-2018 YPK_1404 cc0749ec25efa5be29dd6fef9f9db834 290 Hamap MF_01234 N-acetylmannosamine kinase [nanK]. 2 290 49.201 T 12-10-2018 IPR023945 N-acetylmannosamine kinase, bacterial GO:0005524|GO:0008270|GO:0009384|GO:0019262 KEGG: 00520+2.7.1.60|MetaCyc: PWY-6138 YPK_1404 cc0749ec25efa5be29dd6fef9f9db834 290 ProSitePatterns PS01125 ROK family signature. 129 156 - T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_1404 cc0749ec25efa5be29dd6fef9f9db834 290 Pfam PF00480 ROK family 5 288 4.2E-70 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_1404 cc0749ec25efa5be29dd6fef9f9db834 290 SUPERFAMILY SSF53067 3 288 7.69E-53 T 12-10-2018 YPK_1404 cc0749ec25efa5be29dd6fef9f9db834 290 Gene3D G3DSA:3.30.420.40 6 283 8.4E-79 T 12-10-2018 YPK_3988 8d6c31a4104b0f9724bb75abf31402f1 175 Gene3D G3DSA:3.40.1000.10 38 175 2.9E-8 T 12-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPK_3988 8d6c31a4104b0f9724bb75abf31402f1 175 Pfam PF08786 DcrB 41 171 1.3E-26 T 12-10-2018 IPR014894 Protein DcrB YPK_3129 94ca7ccfb1a6f024c663d76dba364e92 282 Pfam PF13708 Domain of unknown function (DUF4942) 90 276 3.3E-64 T 12-10-2018 IPR031339 Domain of unknown function DUF4942 YPK_3673 0b6a0d02da90fa9da56f84fc60331892 410 Gene3D G3DSA:3.90.220.20 223 366 9.1E-64 T 12-10-2018 YPK_3673 0b6a0d02da90fa9da56f84fc60331892 410 SUPERFAMILY SSF116734 6 205 4.25E-36 T 12-10-2018 YPK_3673 0b6a0d02da90fa9da56f84fc60331892 410 Pfam PF01420 Type I restriction modification DNA specificity domain 18 191 9.1E-11 T 12-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 YPK_3673 0b6a0d02da90fa9da56f84fc60331892 410 Pfam PF01420 Type I restriction modification DNA specificity domain 221 397 1.7E-6 T 12-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 YPK_3673 0b6a0d02da90fa9da56f84fc60331892 410 SUPERFAMILY SSF116734 210 409 1.64E-28 T 12-10-2018 YPK_3673 0b6a0d02da90fa9da56f84fc60331892 410 Gene3D G3DSA:1.10.287.1120 161 407 9.1E-64 T 12-10-2018 YPK_3673 0b6a0d02da90fa9da56f84fc60331892 410 Gene3D G3DSA:3.90.220.20 18 160 9.1E-64 T 12-10-2018 YPK_1801 bd7bf8930dab033b662994f9233a31d0 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 275 1.1E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1801 bd7bf8930dab033b662994f9233a31d0 296 SUPERFAMILY SSF161098 50 273 1.1E-58 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1801 bd7bf8930dab033b662994f9233a31d0 296 SUPERFAMILY SSF160964 4 39 6.41E-5 T 12-10-2018 YPK_1801 bd7bf8930dab033b662994f9233a31d0 296 Gene3D G3DSA:1.10.3720.10 46 284 1.2E-66 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2696 21eb55a92de7ba15aef68682db1bdf27 370 Gene3D G3DSA:2.40.50.100 60 222 4.9E-87 T 12-10-2018 YPK_2696 21eb55a92de7ba15aef68682db1bdf27 370 Gene3D G3DSA:2.40.420.20 45 362 4.9E-87 T 12-10-2018 YPK_2696 21eb55a92de7ba15aef68682db1bdf27 370 SUPERFAMILY SSF111369 52 298 1.31E-29 T 12-10-2018 YPK_2696 21eb55a92de7ba15aef68682db1bdf27 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 49 294 2.5E-22 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain YPK_2696 21eb55a92de7ba15aef68682db1bdf27 370 Gene3D G3DSA:2.40.30.170 49 301 4.9E-87 T 12-10-2018 YPK_2696 21eb55a92de7ba15aef68682db1bdf27 370 Gene3D G3DSA:1.10.287.470 94 185 4.9E-87 T 12-10-2018 YPK_2696 21eb55a92de7ba15aef68682db1bdf27 370 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 363 9.1E-60 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_3313 b79e71f444a58f0454a892e5526c5229 596 Pfam PF08479 POTRA domain, ShlB-type 86 166 3.0E-13 T 12-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type YPK_3313 b79e71f444a58f0454a892e5526c5229 596 Gene3D G3DSA:2.40.160.50 213 593 3.8E-60 T 12-10-2018 YPK_3313 b79e71f444a58f0454a892e5526c5229 596 Gene3D G3DSA:3.10.20.310 79 166 5.7E-16 T 12-10-2018 YPK_3313 b79e71f444a58f0454a892e5526c5229 596 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 241 532 4.2E-17 T 12-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal YPK_2050 7ebbf9a1e865175791d1bcd23feff099 256 Hamap MF_01067 UPF0259 membrane protein YciC [yciC]. 1 249 22.426 T 12-10-2018 IPR009627 Uncharacterised protein family UPF0259 YPK_2050 7ebbf9a1e865175791d1bcd23feff099 256 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 247 1.6E-101 T 12-10-2018 IPR009627 Uncharacterised protein family UPF0259 YPK_2952 372147d5400d43f31fb791ab162779f8 241 Pfam PF04973 Nicotinamide mononucleotide transporter 23 227 4.9E-53 T 12-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 YPK_2952 372147d5400d43f31fb791ab162779f8 241 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 229 4.6E-63 T 12-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 YPK_2706 43a28bc1953b580726cdb0118fea9e37 496 Pfam PF13460 NAD(P)H-binding 10 153 9.9E-12 T 12-10-2018 IPR016040 NAD(P)-binding domain YPK_2706 43a28bc1953b580726cdb0118fea9e37 496 SUPERFAMILY SSF51735 1 301 2.43E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2706 43a28bc1953b580726cdb0118fea9e37 496 Pfam PF11066 Protein of unknown function (DUF2867) 340 469 1.0E-12 T 12-10-2018 IPR021295 Protein of unknown function DUF2867 YPK_2706 43a28bc1953b580726cdb0118fea9e37 496 Gene3D G3DSA:3.40.50.720 5 305 1.9E-32 T 12-10-2018 YPK_2213 37083a0dfe62151ad21488e7ec367739 320 SUPERFAMILY SSF51735 1 319 2.63E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2213 37083a0dfe62151ad21488e7ec367739 320 Gene3D G3DSA:3.40.50.720 1 320 2.1E-44 T 12-10-2018 YPK_2213 37083a0dfe62151ad21488e7ec367739 320 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 167 8.4E-22 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_3284 d44db5cf27254f82d43dba20696e0b99 173 Pfam PF08241 Methyltransferase domain 9 63 9.9E-17 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 YPK_3284 d44db5cf27254f82d43dba20696e0b99 173 SUPERFAMILY SSF53335 4 169 1.3E-30 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3284 d44db5cf27254f82d43dba20696e0b99 173 Gene3D G3DSA:3.40.50.150 1 172 1.1E-39 T 12-10-2018 YPK_2514 8a0f2581aa5a809d0ab8708f1d3428b0 105 Pfam PF04363 Protein of unknown function (DUF496) 9 100 3.8E-47 T 12-10-2018 IPR007458 Protein of unknown function DUF496 YPK_2514 8a0f2581aa5a809d0ab8708f1d3428b0 105 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 25.92 T 12-10-2018 IPR007458 Protein of unknown function DUF496 YPK_2514 8a0f2581aa5a809d0ab8708f1d3428b0 105 PIRSF PIRSF028773 1 105 1.0E-50 T 12-10-2018 IPR007458 Protein of unknown function DUF496 YPK_2514 8a0f2581aa5a809d0ab8708f1d3428b0 105 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 12 99 3.0E-43 T 12-10-2018 IPR007458 Protein of unknown function DUF496 YPK_3563 1dd8521a173ee7334f14ff9c10688e08 172 Pfam PF05638 Type VI secretion system effector, Hcp 8 147 3.5E-39 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp YPK_3563 1dd8521a173ee7334f14ff9c10688e08 172 SUPERFAMILY SSF141452 5 169 4.97E-40 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_3563 1dd8521a173ee7334f14ff9c10688e08 172 Gene3D G3DSA:2.30.110.20 5 171 1.2E-54 T 12-10-2018 IPR036624 Hcp1-like superfamily YPK_1914 a12d91738f7001e21770eb51449ed4da 110 SUPERFAMILY SSF103481 6 105 8.63E-20 T 12-10-2018 YPK_1914 a12d91738f7001e21770eb51449ed4da 110 Gene3D G3DSA:1.10.3730.20 1 110 6.8E-37 T 12-10-2018 YPK_1914 a12d91738f7001e21770eb51449ed4da 110 Pfam PF00893 Small Multidrug Resistance protein 3 94 2.5E-28 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 YPK_2809 dab1ae4e1ea0714aac207c7794a06a98 238 Gene3D G3DSA:2.60.40.3940 133 238 1.7E-8 T 12-10-2018 YPK_3924 da77fda4c0e2a887dffae4d9e1ec5f1f 385 SUPERFAMILY SSF53474 60 385 3.41E-35 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3924 da77fda4c0e2a887dffae4d9e1ec5f1f 385 Pfam PF12715 Abhydrolase family 46 341 2.0E-20 T 12-10-2018 IPR025890 Abhydrolase, bacterial YPK_3924 da77fda4c0e2a887dffae4d9e1ec5f1f 385 Gene3D G3DSA:3.40.50.1820 19 385 9.7E-86 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_0611 15765920cb78637f03b6d01ce5f77ab4 176 SUPERFAMILY SSF160631 61 157 2.49E-5 T 12-10-2018 YPK_2820 568c095c349f1cd8ee0f5c744167b43c 64 ProDom PD027295 GP38 FLUMU BACTERIOPHAGE MU-LIKE ECS4978 SB12 PHAGE ORF10 PROPHAGE 1 42 1.0E-18 T 12-10-2018 IPR024400 Protein of unknown function DUF2635 YPK_2820 568c095c349f1cd8ee0f5c744167b43c 64 Pfam PF10948 Protein of unknown function (DUF2635) 3 47 2.2E-22 T 12-10-2018 IPR024400 Protein of unknown function DUF2635 YPK_0273 699318a71524e7a6b04f82d0da248795 121 SUPERFAMILY SSF75169 4 121 9.94E-38 T 12-10-2018 IPR027396 DsrEFH-like YPK_0273 699318a71524e7a6b04f82d0da248795 121 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 5 121 2.6E-48 T 12-10-2018 IPR017462 Sulphur relay, TusC/DsrF YPK_0273 699318a71524e7a6b04f82d0da248795 121 Pfam PF02635 DsrE/DsrF-like family 4 121 1.7E-24 T 12-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein YPK_0273 699318a71524e7a6b04f82d0da248795 121 Hamap MF_00389 Protein TusC [tusC]. 3 121 37.128 T 12-10-2018 IPR037450 Sulphur relay, TusC YPK_0273 699318a71524e7a6b04f82d0da248795 121 Gene3D G3DSA:3.40.1260.10 3 121 3.6E-39 T 12-10-2018 IPR027396 DsrEFH-like YPK_3974 354e08a95293331af6652c9cca36ff84 371 Gene3D G3DSA:3.40.50.2300 145 273 1.6E-116 T 12-10-2018 YPK_3974 354e08a95293331af6652c9cca36ff84 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 49 65 1.0E-61 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_3974 354e08a95293331af6652c9cca36ff84 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 68 86 1.0E-61 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_3974 354e08a95293331af6652c9cca36ff84 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 331 346 1.0E-61 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_3974 354e08a95293331af6652c9cca36ff84 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 278 291 1.0E-61 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_3974 354e08a95293331af6652c9cca36ff84 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 27 43 1.0E-61 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_3974 354e08a95293331af6652c9cca36ff84 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 255 273 1.0E-61 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_3974 354e08a95293331af6652c9cca36ff84 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 89 99 1.0E-61 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 YPK_3974 354e08a95293331af6652c9cca36ff84 371 Pfam PF13458 Periplasmic binding protein 27 353 3.8E-62 T 12-10-2018 IPR028081 Leucine-binding protein domain YPK_3974 354e08a95293331af6652c9cca36ff84 371 SUPERFAMILY SSF53822 26 368 1.08E-88 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_3974 354e08a95293331af6652c9cca36ff84 371 Gene3D G3DSA:3.40.50.2300 28 343 1.6E-116 T 12-10-2018 YPK_0227 2f4c431c0fd8b236eaa85397bbabe1eb 329 Pfam PF05036 Sporulation related domain 245 318 3.0E-10 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 YPK_0227 2f4c431c0fd8b236eaa85397bbabe1eb 329 Gene3D G3DSA:3.30.70.1070 227 328 1.5E-33 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YPK_0227 2f4c431c0fd8b236eaa85397bbabe1eb 329 SUPERFAMILY SSF110997 244 309 5.1E-5 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 YPK_0227 2f4c431c0fd8b236eaa85397bbabe1eb 329 Hamap MF_02021 Cell division protein DamX [damX]. 1 329 25.583 T 12-10-2018 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 YPK_3542 8b403fda7ebec0005e9e72263e698154 358 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 50 352 4.9E-144 T 12-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 YPK_3542 8b403fda7ebec0005e9e72263e698154 358 SUPERFAMILY SSF53850 52 353 1.23E-64 T 12-10-2018 YPK_3542 8b403fda7ebec0005e9e72263e698154 358 Pfam PF13343 Bacterial extracellular solute-binding protein 104 339 7.6E-17 T 12-10-2018 YPK_3542 8b403fda7ebec0005e9e72263e698154 358 Gene3D G3DSA:3.40.190.10 154 353 1.3E-118 T 12-10-2018 YPK_3542 8b403fda7ebec0005e9e72263e698154 358 Gene3D G3DSA:3.40.190.10 54 328 1.3E-118 T 12-10-2018 YPK_3542 8b403fda7ebec0005e9e72263e698154 358 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 39 358 1.5E-161 T 12-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 YPK_1157 44d86bdb4d4d937091a3ba6dea487f7a 216 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 20 203 4.8E-69 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 YPK_1157 44d86bdb4d4d937091a3ba6dea487f7a 216 PIRSF PIRSF001296 16 208 8.4E-75 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 YPK_1157 44d86bdb4d4d937091a3ba6dea487f7a 216 Pfam PF02669 K+-transporting ATPase, c chain 21 202 4.9E-67 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 YPK_1157 44d86bdb4d4d937091a3ba6dea487f7a 216 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 17 204 33.922 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 YPK_0199 ae5ad28b2bae04be1c69a6c6b0667151 212 Pfam PF00182 Chitinase class I 110 172 5.3E-7 T 12-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 YPK_0199 ae5ad28b2bae04be1c69a6c6b0667151 212 SUPERFAMILY SSF53955 13 207 3.37E-43 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily YPK_3139 280a41943c6403575ef076e31690c91a 195 Pfam PF11726 Inovirus Gp2 20 168 1.9E-8 T 12-10-2018 YPK_0590 53b466806263f11a2db88c85bfc126ef 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 283 1.6E-9 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0590 53b466806263f11a2db88c85bfc126ef 293 SUPERFAMILY SSF161098 52 281 5.89E-45 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0590 53b466806263f11a2db88c85bfc126ef 293 Gene3D G3DSA:1.10.3720.10 48 292 4.8E-55 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2411 5e44ff0be815b42bdc3c857f71461fab 359 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 331 1.1E-25 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 2.0E-149 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 7.5E-52 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 SUPERFAMILY SSF52021 3 143 7.32E-57 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 1.0E-40 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 1.0E-40 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 1.0E-40 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 1.0E-40 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 1.0E-40 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 SMART SM01097 3 133 1.2E-90 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 Gene3D G3DSA:3.50.30.20 2 151 2.6E-61 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 SUPERFAMILY SSF52317 153 378 4.74E-63 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.2E-5 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.2E-5 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.2E-5 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 48.404 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 Pfam PF00117 Glutamine amidotransferase class-I 197 372 7.4E-48 T 12-10-2018 IPR017926 Glutamine amidotransferase YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 Gene3D G3DSA:3.40.50.880 152 379 2.7E-76 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.4E-11 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.4E-11 T 12-10-2018 YPK_3583 8d57e3963cab1929cd09c6db7e16215f 391 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.4E-11 T 12-10-2018 YPK_0776 8143c3dabb99645067bb46f2030c03af 128 Pfam PF15571 Immunity protein 44 1 116 3.8E-8 T 12-10-2018 IPR029078 Immunity protein 44 YPK_2959 0bd346a96b0286c19b53fcdc9706127a 225 Pfam PF01618 MotA/TolQ/ExbB proton channel family 75 204 7.3E-42 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel YPK_2959 0bd346a96b0286c19b53fcdc9706127a 225 TIGRFAM TIGR02796 tolQ: protein TolQ 2 216 5.9E-94 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 YPK_2959 0bd346a96b0286c19b53fcdc9706127a 225 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 1 221 43.381 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 YPK_1741 418d744d0fb183e2aa6abd6b34895a50 63 Hamap MF_01549 Protein DsrB [dsrB]. 1 62 26.725 T 12-10-2018 IPR019717 Dextransucrase DSRB YPK_1741 418d744d0fb183e2aa6abd6b34895a50 63 Pfam PF10781 Dextransucrase DSRB 1 60 2.0E-37 T 12-10-2018 IPR019717 Dextransucrase DSRB YPK_0939 24c671b8c05f5761fed17a5e381a1a0d 150 Pfam PF05926 Phage head completion protein (GPL) 14 150 9.6E-44 T 12-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 YPK_3951 da2393b5efe7c860d69c56894b5236b5 290 Gene3D G3DSA:3.40.50.1820 40 278 6.1E-75 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3951 da2393b5efe7c860d69c56894b5236b5 290 SUPERFAMILY SSF53474 45 278 5.12E-50 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_3951 da2393b5efe7c860d69c56894b5236b5 290 Pfam PF01738 Dienelactone hydrolase family 56 278 1.2E-75 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 YPK_2610 0ab7b36e76587228862b20e0c2c49a34 427 Gene3D G3DSA:3.40.47.10 1 270 2.2E-48 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2610 0ab7b36e76587228862b20e0c2c49a34 427 SUPERFAMILY SSF53901 230 425 1.25E-56 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2610 0ab7b36e76587228862b20e0c2c49a34 427 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 270 382 5.4E-30 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal YPK_2610 0ab7b36e76587228862b20e0c2c49a34 427 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 262 1.3E-25 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal YPK_2610 0ab7b36e76587228862b20e0c2c49a34 427 Gene3D G3DSA:3.40.47.10 272 414 5.9E-40 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2610 0ab7b36e76587228862b20e0c2c49a34 427 SUPERFAMILY SSF53901 4 267 1.94E-40 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 YPK_2610 0ab7b36e76587228862b20e0c2c49a34 427 SMART SM00825 Beta-ketoacyl synthase 6 427 5.6E-11 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YPK_2986 5b2e9cb9be3806a0a7c92ee49836cbbe 255 SUPERFAMILY SSF53474 3 253 1.77E-52 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2986 5b2e9cb9be3806a0a7c92ee49836cbbe 255 Pfam PF12697 Alpha/beta hydrolase family 19 246 7.1E-22 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_2986 5b2e9cb9be3806a0a7c92ee49836cbbe 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 85 98 2.1E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_2986 5b2e9cb9be3806a0a7c92ee49836cbbe 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 42 57 2.1E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_2986 5b2e9cb9be3806a0a7c92ee49836cbbe 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 2.1E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 YPK_2986 5b2e9cb9be3806a0a7c92ee49836cbbe 255 Gene3D G3DSA:3.40.50.1820 2 253 1.5E-74 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1107 056469338fb23e76f5e42acc31aae2a3 239 Gene3D G3DSA:3.40.50.150 52 181 3.8E-12 T 12-10-2018 YPK_1107 056469338fb23e76f5e42acc31aae2a3 239 Pfam PF08241 Methyltransferase domain 77 125 1.1E-8 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 YPK_1107 056469338fb23e76f5e42acc31aae2a3 239 SUPERFAMILY SSF53335 77 182 2.87E-15 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_0445 22db6c43ff4cb5cfc30058540f7f8d7a 155 Pfam PF05433 Glycine zipper 2TM domain 61 102 2.1E-7 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 YPK_0800 2cb3742a4e9db2bc3527165825a51bde 450 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 448 6.2E-139 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YPK_0800 2cb3742a4e9db2bc3527165825a51bde 450 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 18 447 1.1E-136 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YPK_2577 78fde490743f3682b72bbe75f5e9d78a 436 SUPERFAMILY SSF102114 74 400 1.27E-34 T 12-10-2018 YPK_2577 78fde490743f3682b72bbe75f5e9d78a 436 Pfam PF04055 Radical SAM superfamily 80 245 2.3E-10 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_2577 78fde490743f3682b72bbe75f5e9d78a 436 Gene3D G3DSA:3.20.20.70 73 436 2.5E-77 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2577 78fde490743f3682b72bbe75f5e9d78a 436 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 328 418 2.0E-10 T 12-10-2018 IPR023885 4Fe4S-binding SPASM domain YPK_0212 7f019cfc5ae56e77d61ba5efe955b570 212 Pfam PF11363 Protein of unknown function (DUF3164) 17 210 1.7E-82 T 12-10-2018 IPR021505 Bacteriophage B3, Orf6 YPK_0040 f9e7dbbc3ecb1d9de81d4a0af8218541 224 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 204 4.6E-66 T 12-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 YPK_0040 f9e7dbbc3ecb1d9de81d4a0af8218541 224 SUPERFAMILY SSF81342 4 206 3.14E-55 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YPK_0040 f9e7dbbc3ecb1d9de81d4a0af8218541 224 Gene3D G3DSA:1.20.950.20 1 214 1.7E-73 T 12-10-2018 YPK_0040 f9e7dbbc3ecb1d9de81d4a0af8218541 224 Pfam PF01292 Prokaryotic cytochrome b561 9 184 3.2E-23 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 YPK_2887 3d3b0db781b05645965d2e3d65614e73 314 Gene3D G3DSA:3.20.20.70 1 244 3.7E-86 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2887 3d3b0db781b05645965d2e3d65614e73 314 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 10 312 51.76 T 12-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 YPK_2887 3d3b0db781b05645965d2e3d65614e73 314 Pfam PF01207 Dihydrouridine synthase (Dus) 6 292 1.6E-88 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_2887 3d3b0db781b05645965d2e3d65614e73 314 Gene3D G3DSA:1.20.225.30 245 314 2.0E-33 T 12-10-2018 YPK_2887 3d3b0db781b05645965d2e3d65614e73 314 PIRSF PIRSF006621 1 314 2.2E-82 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_2887 3d3b0db781b05645965d2e3d65614e73 314 SUPERFAMILY SSF51395 3 304 8.97E-71 T 12-10-2018 YPK_2887 3d3b0db781b05645965d2e3d65614e73 314 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 YPK_1028 31d25d69b71ca753a7d3f8fe136040e1 406 Gene3D G3DSA:1.20.1250.20 9 393 3.7E-25 T 12-10-2018 YPK_1028 31d25d69b71ca753a7d3f8fe136040e1 406 SUPERFAMILY SSF103473 14 401 1.57E-27 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_1028 31d25d69b71ca753a7d3f8fe136040e1 406 Pfam PF07690 Major Facilitator Superfamily 19 343 4.5E-16 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_1028 31d25d69b71ca753a7d3f8fe136040e1 406 Hamap MF_01585 Lysophospholipid transporter LplT [lplT]. 1 397 44.294 T 12-10-2018 IPR023727 Lysophospholipid transporter LplT GO:0005886|GO:0051977|GO:0051978 YPK_3900 2b8a4ef893e7854607d15f886c5afc93 264 Pfam PF01311 Bacterial export proteins, family 1 9 243 1.0E-52 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_3900 2b8a4ef893e7854607d15f886c5afc93 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 179 201 6.1E-28 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_3900 2b8a4ef893e7854607d15f886c5afc93 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 78 97 6.1E-28 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_3900 2b8a4ef893e7854607d15f886c5afc93 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 17 38 6.1E-28 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_3900 2b8a4ef893e7854607d15f886c5afc93 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 201 220 6.1E-28 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 YPK_3900 2b8a4ef893e7854607d15f886c5afc93 264 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 7 248 5.6E-72 T 12-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 YPK_2264 c329e43ac2ca9f72cc02bb3fbb60128a 157 SUPERFAMILY SSF49478 39 88 5.89E-7 T 12-10-2018 YPK_2264 c329e43ac2ca9f72cc02bb3fbb60128a 157 Gene3D G3DSA:2.60.40.10 29 103 3.7E-8 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_4161 bf9076d5b8aff608436d60f9575bdd6f 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 3.7E-34 T 12-10-2018 IPR013551 Domain of unknown function DUF1732 YPK_4161 bf9076d5b8aff608436d60f9575bdd6f 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 7.5E-44 T 12-10-2018 IPR013527 YicC-like, N-terminal YPK_4161 bf9076d5b8aff608436d60f9575bdd6f 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 2.3E-130 T 12-10-2018 IPR005229 Conserved hypothetical protein CHP00255 YPK_3143 90044ba7b3107166d7904389ce458e8c 248 Pfam PF13391 HNH endonuclease 165 210 3.7E-7 T 12-10-2018 IPR003615 HNH nuclease YPK_3824 a582a01b1bf08e06352a81f75fd35669 195 Pfam PF04186 FxsA cytoplasmic membrane protein 16 117 1.5E-31 T 12-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 YPK_1813 2123b924a10ff3801504b7bc7c0218e8 294 Gene3D G3DSA:1.10.3470.10 39 269 6.4E-9 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_1813 2123b924a10ff3801504b7bc7c0218e8 294 Pfam PF00950 ABC 3 transport family 10 265 3.0E-90 T 12-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 YPK_1813 2123b924a10ff3801504b7bc7c0218e8 294 SUPERFAMILY SSF81345 5 261 1.31E-38 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_2524 9d0483260b9d4aa2d301f4b125d34352 275 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 213 4.1E-6 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_2524 9d0483260b9d4aa2d301f4b125d34352 275 SUPERFAMILY SSF51735 2 267 1.94E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_2524 9d0483260b9d4aa2d301f4b125d34352 275 Gene3D G3DSA:3.40.50.720 1 271 4.4E-60 T 12-10-2018 YPK_0320 f151b14fb5936779bf5b47ff4944e129 190 SUPERFAMILY SSF55821 10 186 5.8E-54 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily YPK_0320 f151b14fb5936779bf5b47ff4944e129 190 Pfam PF01300 Telomere recombination 16 182 1.6E-42 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 YPK_0320 f151b14fb5936779bf5b47ff4944e129 190 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 7 188 41.278 T 12-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 YPK_0320 f151b14fb5936779bf5b47ff4944e129 190 Gene3D G3DSA:3.90.870.10 1 188 2.8E-61 T 12-10-2018 YPK_1997 951e383ff1e011697b668a7cd4c7cf82 349 Pfam PF02653 Branched-chain amino acid transport system / permease component 79 336 3.5E-44 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1542 7ae49199b636f4e564f0e1649cf5d9e6 302 Pfam PF08338 Domain of unknown function (DUF1731) 250 296 1.7E-19 T 12-10-2018 IPR013549 Domain of unknown function DUF1731 YPK_1542 7ae49199b636f4e564f0e1649cf5d9e6 302 Gene3D G3DSA:3.40.50.720 2 300 2.6E-75 T 12-10-2018 YPK_1542 7ae49199b636f4e564f0e1649cf5d9e6 302 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 1.2E-114 T 12-10-2018 IPR010099 Epimerase family protein SDR39U1 YPK_1542 7ae49199b636f4e564f0e1649cf5d9e6 302 SUPERFAMILY SSF51735 1 298 8.1E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily YPK_1542 7ae49199b636f4e564f0e1649cf5d9e6 302 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 215 9.3E-19 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 YPK_3656 3c5c37fde0e5e5aeeece468d94594923 163 Pfam PF10696 Protein of unknown function (DUF2501) 82 160 2.8E-29 T 12-10-2018 IPR019637 Protein of unknown function DUF2501 YPK_1430 41795cb14b36e777735f215afbc48dc3 244 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 6 222 2.2E-45 T 12-10-2018 YPK_1430 41795cb14b36e777735f215afbc48dc3 244 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 1 240 28.747 T 12-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 YPK_2473 576fa76863f77d74ab7a6d4c305a8742 257 SUPERFAMILY SSF64438 20 193 1.48E-47 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic YPK_2473 576fa76863f77d74ab7a6d4c305a8742 257 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 39 193 1.1E-42 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase YPK_2473 576fa76863f77d74ab7a6d4c305a8742 257 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 35 192 1.4E-45 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase YPK_2473 576fa76863f77d74ab7a6d4c305a8742 257 Gene3D G3DSA:3.60.140.10 20 198 1.4E-48 T 12-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily YPK_4216 43a4ab7b81d5c1e934889625011c9261 146 SUPERFAMILY SSF52218 1 146 2.86E-41 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_4216 43a4ab7b81d5c1e934889625011c9261 146 PRINTS PR00369 Flavodoxin signature 51 62 3.0E-9 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_4216 43a4ab7b81d5c1e934889625011c9261 146 PRINTS PR00369 Flavodoxin signature 106 125 3.0E-9 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_4216 43a4ab7b81d5c1e934889625011c9261 146 PRINTS PR00369 Flavodoxin signature 5 18 3.0E-9 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_4216 43a4ab7b81d5c1e934889625011c9261 146 PRINTS PR00369 Flavodoxin signature 82 92 3.0E-9 T 12-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 YPK_4216 43a4ab7b81d5c1e934889625011c9261 146 Pfam PF00258 Flavodoxin 7 138 4.4E-28 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YPK_4216 43a4ab7b81d5c1e934889625011c9261 146 Gene3D G3DSA:3.40.50.360 1 146 3.6E-50 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_2697 424828927a78b70b5d9706f068f6e46f 315 Pfam PF04393 Protein of unknown function (DUF535) 33 311 4.2E-103 T 12-10-2018 IPR007488 Protein of unknown function DUF535 YPK_4006 23168821dd59ebb9564bff717564d318 228 Gene3D G3DSA:1.10.357.10 12 130 1.0E-12 T 12-10-2018 YPK_4006 23168821dd59ebb9564bff717564d318 228 SUPERFAMILY SSF46689 19 80 4.85E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 YPK_4006 23168821dd59ebb9564bff717564d318 228 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 69 3.4E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 YPK_0881 556bdf97d8616664df34617ba1a6bcca 172 Gene3D G3DSA:3.40.50.360 1 171 4.5E-48 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_0881 556bdf97d8616664df34617ba1a6bcca 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 168 2.5E-73 T 12-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 YPK_0881 556bdf97d8616664df34617ba1a6bcca 172 Pfam PF00258 Flavodoxin 5 160 4.7E-27 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 YPK_0881 556bdf97d8616664df34617ba1a6bcca 172 PIRSF PIRSF038996 1 171 4.2E-55 T 12-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 YPK_0881 556bdf97d8616664df34617ba1a6bcca 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 12-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 YPK_0881 556bdf97d8616664df34617ba1a6bcca 172 SUPERFAMILY SSF52218 1 166 4.66E-46 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_1681 02d5baf5e72a1fe7e555f99265275a0d 174 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 1.2E-15 T 12-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD YPK_3812 53ccdaf13b1003d691aae5f34d970a6c 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 1.5E-129 T 12-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 YPK_3812 53ccdaf13b1003d691aae5f34d970a6c 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 14 322 1.8E-45 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 YPK_3812 53ccdaf13b1003d691aae5f34d970a6c 325 SUPERFAMILY SSF55681 13 322 5.36E-82 T 12-10-2018 YPK_3812 53ccdaf13b1003d691aae5f34d970a6c 325 Gene3D G3DSA:3.30.930.10 1 325 8.7E-122 T 12-10-2018 YPK_3812 53ccdaf13b1003d691aae5f34d970a6c 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 56.575 T 12-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 YPK_3812 53ccdaf13b1003d691aae5f34d970a6c 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 5.9E-6 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_3812 53ccdaf13b1003d691aae5f34d970a6c 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 5.9E-6 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 YPK_3308 da14512ba6efc01adf70c8e7b9361a64 193 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.677 T 12-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 YPK_3308 da14512ba6efc01adf70c8e7b9361a64 193 SUPERFAMILY SSF53697 1 189 2.43E-52 T 12-10-2018 YPK_3308 da14512ba6efc01adf70c8e7b9361a64 193 Pfam PF13580 SIS domain 14 146 9.4E-32 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 YPK_3308 da14512ba6efc01adf70c8e7b9361a64 193 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 2.9E-84 T 12-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 YPK_3308 da14512ba6efc01adf70c8e7b9361a64 193 Gene3D G3DSA:3.40.50.10490 1 192 2.5E-72 T 12-10-2018 YPK_2330 c8d5f9749fd37dd4934f56151df3c17f 217 Pfam PF05944 Phage small terminase subunit 36 164 1.6E-46 T 12-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 YPK_0918 300753a5e2e76153d87b74f016acde9b 551 SUPERFAMILY SSF69349 340 497 4.94E-9 T 12-10-2018 YPK_0918 300753a5e2e76153d87b74f016acde9b 551 SUPERFAMILY SSF69255 257 349 1.39E-14 T 12-10-2018 YPK_0918 300753a5e2e76153d87b74f016acde9b 551 Gene3D G3DSA:2.40.50.230 252 353 1.8E-5 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily YPK_1177 4665f03771e5ccc420aeb8a3ed513cc9 218 Gene3D G3DSA:1.25.40.20 14 208 5.4E-26 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily YPK_1177 4665f03771e5ccc420aeb8a3ed513cc9 218 SUPERFAMILY SSF48403 15 188 1.29E-30 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily YPK_1177 4665f03771e5ccc420aeb8a3ed513cc9 218 SMART SM00248 43 72 600.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 YPK_1177 4665f03771e5ccc420aeb8a3ed513cc9 218 SMART SM00248 143 172 0.6 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 YPK_1177 4665f03771e5ccc420aeb8a3ed513cc9 218 SMART SM00248 110 139 460.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 YPK_1177 4665f03771e5ccc420aeb8a3ed513cc9 218 SMART SM00248 76 105 2400.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 YPK_3252 caa7f159ba81894e910d72d1faa3c692 306 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site YPK_3252 caa7f159ba81894e910d72d1faa3c692 306 Pfam PF00348 Polyprenyl synthetase 38 278 4.2E-57 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 YPK_3252 caa7f159ba81894e910d72d1faa3c692 306 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 88 104 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site YPK_3252 caa7f159ba81894e910d72d1faa3c692 306 Gene3D G3DSA:1.10.600.10 8 306 1.4E-106 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily YPK_3252 caa7f159ba81894e910d72d1faa3c692 306 SUPERFAMILY SSF48576 9 290 2.26E-86 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily YPK_2358 bba318e8d59d26d4c87a289382df2b95 113 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 14 111 2.0E-49 T 12-10-2018 IPR009707 Membrane protein GlpM/YdgC YPK_2358 bba318e8d59d26d4c87a289382df2b95 113 Pfam PF06942 GlpM protein 5 111 2.7E-50 T 12-10-2018 IPR009707 Membrane protein GlpM/YdgC YPK_0267 d37417b7762adabd3ddffd605e045dc1 73 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 10 67 5.8E-30 T 12-10-2018 IPR012658 Conserved hypothetical protein CHP02443 YPK_0267 d37417b7762adabd3ddffd605e045dc1 73 Pfam PF09526 Probable metal-binding protein (DUF2387) 10 59 8.1E-20 T 12-10-2018 IPR012658 Conserved hypothetical protein CHP02443 YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Gene3D G3DSA:3.90.930.1 237 378 7.1E-12 T 12-10-2018 YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Pfam PF03527 RHS protein 951 983 1.7E-10 T 12-10-2018 IPR001826 RHS protein YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Pfam PF05593 RHS Repeat 846 874 2.1E-5 T 12-10-2018 IPR031325 RHS repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Pfam PF05593 RHS Repeat 521 555 1.1E-5 T 12-10-2018 IPR031325 RHS repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Pfam PF05593 RHS Repeat 591 620 5.4E-5 T 12-10-2018 IPR031325 RHS repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Pfam PF05593 RHS Repeat 457 493 4.5E-5 T 12-10-2018 IPR031325 RHS repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Pfam PF05593 RHS Repeat 326 363 2.9E-6 T 12-10-2018 IPR031325 RHS repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Pfam PF05593 RHS Repeat 821 861 1.2E-5 T 12-10-2018 IPR031325 RHS repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 499 539 6.8E-6 T 12-10-2018 IPR006530 YD repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 591 630 1.5E-8 T 12-10-2018 IPR006530 YD repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 846 876 7.9E-5 T 12-10-2018 IPR006530 YD repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 521 561 1.0E-5 T 12-10-2018 IPR006530 YD repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 305 345 8.1E-7 T 12-10-2018 IPR006530 YD repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 457 495 3.8E-4 T 12-10-2018 IPR006530 YD repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 368 409 0.0024 T 12-10-2018 IPR006530 YD repeat YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Gene3D G3DSA:2.180.10.10 482 766 2.6E-7 T 12-10-2018 YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 Gene3D G3DSA:2.180.10.10 770 1058 5.7E-40 T 12-10-2018 YPK_0410 c1d600916f59e2477baf1fd9494f8410 1189 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 979 1058 2.4E-25 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 YPK_3376 f1386bea64e120ec4620cc059f50b9bc 162 Gene3D G3DSA:3.90.950.20 1 161 3.0E-61 T 12-10-2018 IPR036653 CinA-like, C-terminal YPK_3376 f1386bea64e120ec4620cc059f50b9bc 162 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 13 157 1.5E-57 T 12-10-2018 IPR008136 CinA, C-terminal YPK_3376 f1386bea64e120ec4620cc059f50b9bc 162 Pfam PF02464 Competence-damaged protein 8 158 1.7E-58 T 12-10-2018 IPR008136 CinA, C-terminal YPK_3376 f1386bea64e120ec4620cc059f50b9bc 162 SUPERFAMILY SSF142433 6 159 2.09E-57 T 12-10-2018 IPR036653 CinA-like, C-terminal YPK_2743 bc6f78f614eb3aaefc312d6439b6e853 274 PIRSF PIRSF002854 1 271 7.7E-97 T 12-10-2018 IPR004872 Lipoprotein NlpA family YPK_2743 bc6f78f614eb3aaefc312d6439b6e853 274 Pfam PF03180 NLPA lipoprotein 32 269 8.3E-78 T 12-10-2018 IPR004872 Lipoprotein NlpA family YPK_2743 bc6f78f614eb3aaefc312d6439b6e853 274 SUPERFAMILY SSF53850 32 270 9.41E-67 T 12-10-2018 YPK_2743 bc6f78f614eb3aaefc312d6439b6e853 274 Gene3D G3DSA:3.40.190.10 32 267 3.3E-88 T 12-10-2018 YPK_2743 bc6f78f614eb3aaefc312d6439b6e853 274 Gene3D G3DSA:3.40.190.10 111 219 3.3E-88 T 12-10-2018 YPK_3704 6a3e6943e1ceb1987e8e6d6424b0bf46 147 Gene3D G3DSA:2.30.110.10 2 142 3.4E-10 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 YPK_3704 6a3e6943e1ceb1987e8e6d6424b0bf46 147 PIRSF PIRSF009554 3 147 4.3E-64 T 12-10-2018 IPR011194 Uncharacterised protein family UPF0306 YPK_3704 6a3e6943e1ceb1987e8e6d6424b0bf46 147 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 6 143 37.016 T 12-10-2018 IPR011194 Uncharacterised protein family UPF0306 YPK_3704 6a3e6943e1ceb1987e8e6d6424b0bf46 147 SUPERFAMILY SSF50475 10 142 2.24E-12 T 12-10-2018 YPK_4193 1f9064d53cef2f19e1a55ef2fb40d865 188 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 182 17.397 T 12-10-2018 IPR007336 Der GTPase activator GO:0005096 YPK_4193 1f9064d53cef2f19e1a55ef2fb40d865 188 Pfam PF04220 Der GTPase activator (YihI) 20 179 1.0E-56 T 12-10-2018 IPR007336 Der GTPase activator GO:0005096 YPK_0661 ae25416bcc5f2dd9257ffd0376895e49 194 Pfam PF02525 Flavodoxin-like fold 3 188 1.7E-35 T 12-10-2018 IPR003680 Flavodoxin-like fold YPK_0661 ae25416bcc5f2dd9257ffd0376895e49 194 SUPERFAMILY SSF52218 1 191 1.7E-40 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_0661 ae25416bcc5f2dd9257ffd0376895e49 194 Gene3D G3DSA:3.40.50.360 1 194 1.5E-64 T 12-10-2018 IPR029039 Flavoprotein-like superfamily YPK_3009 7afa322bf220e9636b96e933b36cf5d0 515 Gene3D G3DSA:3.60.110.10 217 479 1.4E-10 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_3009 7afa322bf220e9636b96e933b36cf5d0 515 Pfam PF00795 Carbon-nitrogen hydrolase 224 476 4.2E-38 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YPK_3009 7afa322bf220e9636b96e933b36cf5d0 515 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 496 24.545 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 YPK_3009 7afa322bf220e9636b96e933b36cf5d0 515 SUPERFAMILY SSF56317 216 491 5.49E-40 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_3009 7afa322bf220e9636b96e933b36cf5d0 515 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 459 1.6E-108 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 Hamap MF_01987 Ribokinase [rbsK]. 1 300 21.004 T 12-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 SUPERFAMILY SSF53613 1 301 3.74E-73 T 12-10-2018 IPR029056 Ribokinase-like YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 Pfam PF00294 pfkB family carbohydrate kinase 3 282 3.1E-51 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 Gene3D G3DSA:3.40.1190.20 1 306 1.1E-81 T 12-10-2018 IPR029056 Ribokinase-like YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 PRINTS PR00990 Ribokinase signature 172 187 1.2E-22 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 PRINTS PR00990 Ribokinase signature 32 51 1.2E-22 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 PRINTS PR00990 Ribokinase signature 216 227 1.2E-22 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 PRINTS PR00990 Ribokinase signature 5 26 1.2E-22 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 PRINTS PR00990 Ribokinase signature 104 117 1.2E-22 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 YPK_0417 527dc77ea2c7ebe2b3eb5a770924363f 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 YPK_0126 94c95df70ff360754f356b9434e8792c 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 318 6.7E-44 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1175 85a549ccf3f5af4bae1fd26228deb64d 320 SUPERFAMILY SSF53474 87 229 1.39E-15 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1175 85a549ccf3f5af4bae1fd26228deb64d 320 Gene3D G3DSA:3.40.50.1820 104 241 6.1E-7 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_1175 85a549ccf3f5af4bae1fd26228deb64d 320 Pfam PF11187 Protein of unknown function (DUF2974) 140 208 1.2E-4 T 12-10-2018 IPR024499 Protein of unknown function DUF2974 YPK_1587 87f54d0335ad9b2fa64f3ea5f216df90 31 Pfam PF00805 Pentapeptide repeats (8 copies) 7 29 5.5E-6 T 12-10-2018 IPR001646 Pentapeptide repeat YPK_0112 00df2f8c313d23f0e85b9be38a3b2d5b 422 Pfam PF02447 GntP family permease 8 415 1.7E-24 T 12-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 YPK_3650 62b78e2502f3eb9087adda990378dff2 527 Pfam PF00005 ABC transporter 284 434 7.7E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3650 62b78e2502f3eb9087adda990378dff2 527 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3650 62b78e2502f3eb9087adda990378dff2 527 SUPERFAMILY SSF52540 282 484 2.45E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3650 62b78e2502f3eb9087adda990378dff2 527 SUPERFAMILY SSF52540 10 228 4.9E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3650 62b78e2502f3eb9087adda990378dff2 527 Gene3D G3DSA:3.40.50.300 8 238 8.4E-57 T 12-10-2018 YPK_3650 62b78e2502f3eb9087adda990378dff2 527 Gene3D G3DSA:3.40.50.300 257 499 3.0E-41 T 12-10-2018 YPK_3650 62b78e2502f3eb9087adda990378dff2 527 SMART SM00382 291 483 2.8E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3650 62b78e2502f3eb9087adda990378dff2 527 SMART SM00382 36 220 3.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_3650 62b78e2502f3eb9087adda990378dff2 527 Pfam PF00005 ABC transporter 27 169 6.6E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_2679 15f6fb25679abe604749f7aefa02a433 265 SUPERFAMILY SSF102114 42 232 1.49E-22 T 12-10-2018 YPK_2679 15f6fb25679abe604749f7aefa02a433 265 Pfam PF04055 Radical SAM superfamily 43 197 6.2E-31 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 YPK_2679 15f6fb25679abe604749f7aefa02a433 265 Gene3D G3DSA:3.20.20.70 21 265 1.0E-104 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2679 15f6fb25679abe604749f7aefa02a433 265 ProSitePatterns PS01087 Radical activating enzymes signature. 37 58 - T 12-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 YPK_2679 15f6fb25679abe604749f7aefa02a433 265 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 25 257 2.9E-106 T 12-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 YPK_2679 15f6fb25679abe604749f7aefa02a433 265 PIRSF PIRSF000371 63 265 4.4E-44 T 12-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 YPK_2679 15f6fb25679abe604749f7aefa02a433 265 PIRSF PIRSF000371 13 66 6.4E-12 T 12-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 YPK_2679 15f6fb25679abe604749f7aefa02a433 265 Pfam PF13353 4Fe-4S single cluster domain 35 144 9.3E-18 T 12-10-2018 YPK_2344 dc19118c60444825f8eead104a41748b 202 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 6 141 1.8E-57 T 12-10-2018 IPR006521 Tail protein I YPK_2344 dc19118c60444825f8eead104a41748b 202 Pfam PF09684 Phage tail protein (Tail_P2_I) 6 141 3.6E-50 T 12-10-2018 IPR006521 Tail protein I YPK_0756 ae00f7d2c9f4275279ee48b964a029c3 428 Pfam PF07690 Major Facilitator Superfamily 17 336 6.0E-10 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0756 ae00f7d2c9f4275279ee48b964a029c3 428 Gene3D G3DSA:1.20.1250.20 15 403 2.6E-14 T 12-10-2018 YPK_0756 ae00f7d2c9f4275279ee48b964a029c3 428 SUPERFAMILY SSF103473 12 412 5.36E-25 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2502 049f088c91ba851bb208e36c2d7ff23d 293 SUPERFAMILY SSF88713 8 291 1.43E-61 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 YPK_2502 049f088c91ba851bb208e36c2d7ff23d 293 Pfam PF01522 Polysaccharide deacetylase 41 145 5.0E-20 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 YPK_2502 049f088c91ba851bb208e36c2d7ff23d 293 Gene3D G3DSA:3.20.20.370 2 292 2.3E-100 T 12-10-2018 YPK_2445 5f4ac8aabb8cd57c33f64c1a01896c8a 106 Gene3D G3DSA:1.10.10.710 21 88 8.5E-14 T 12-10-2018 IPR038627 YebG-like superfamily YPK_2445 5f4ac8aabb8cd57c33f64c1a01896c8a 106 Pfam PF07130 YebG protein 1 74 4.9E-35 T 12-10-2018 IPR009813 Uncharacterised protein family YebG YPK_0185 41e1bf90867492d9d642bf52cc0706cb 353 Pfam PF04865 Baseplate J-like protein 67 308 6.3E-59 T 12-10-2018 IPR006949 Baseplate protein J-like YPK_0151 d9561f5db88b44ce9b19a32f7b59d8c0 815 Gene3D G3DSA:3.40.50.2000 472 795 2.2E-148 T 12-10-2018 YPK_0151 d9561f5db88b44ce9b19a32f7b59d8c0 815 SUPERFAMILY SSF53756 12 814 0.0 T 12-10-2018 YPK_0151 d9561f5db88b44ce9b19a32f7b59d8c0 815 Pfam PF00343 Carbohydrate phosphorylase 102 810 0.0 T 12-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YPK_0151 d9561f5db88b44ce9b19a32f7b59d8c0 815 Gene3D G3DSA:3.40.50.2000 6 471 5.7E-207 T 12-10-2018 YPK_0151 d9561f5db88b44ce9b19a32f7b59d8c0 815 PIRSF PIRSF000460 2 815 8.0E-232 T 12-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YPK_0151 d9561f5db88b44ce9b19a32f7b59d8c0 815 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 12-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YPK_0151 d9561f5db88b44ce9b19a32f7b59d8c0 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 810 0.0 T 12-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 YPK_3838 4649b8b09509f0783a0a96ce32e5d2ba 91 Pfam PF03400 IS1 transposase 1 71 2.8E-30 T 12-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 YPK_4017 bbf9097515f883443376dc71079528be 249 Gene3D G3DSA:3.40.50.10090 32 165 1.9E-68 T 12-10-2018 YPK_4017 bbf9097515f883443376dc71079528be 249 SUPERFAMILY SSF69618 1 247 1.44E-56 T 12-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_4017 bbf9097515f883443376dc71079528be 249 Gene3D G3DSA:3.40.50.10090 4 245 1.9E-68 T 12-10-2018 YPK_4017 bbf9097515f883443376dc71079528be 249 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 242 5.8E-45 T 12-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 YPK_3552 0cfa0f9d11e853e46f8efd4be4e4addd 451 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 444 5.3E-118 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YPK_3552 0cfa0f9d11e853e46f8efd4be4e4addd 451 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 447 2.1E-138 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YPK_4114 c841e9f81c51fa924a0b824a8e2b65d4 336 PIRSF PIRSF004532 1 332 4.0E-139 T 12-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 YPK_4114 c841e9f81c51fa924a0b824a8e2b65d4 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 330 5.7E-177 T 12-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 YPK_4114 c841e9f81c51fa924a0b824a8e2b65d4 336 Gene3D G3DSA:3.40.190.90 110 277 1.1E-128 T 12-10-2018 YPK_4114 c841e9f81c51fa924a0b824a8e2b65d4 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 2.4E-131 T 12-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 YPK_4114 c841e9f81c51fa924a0b824a8e2b65d4 336 Gene3D G3DSA:3.30.540.10 7 320 1.1E-128 T 12-10-2018 YPK_4114 c841e9f81c51fa924a0b824a8e2b65d4 336 SUPERFAMILY SSF56655 1 325 3.54E-108 T 12-10-2018 YPK_2802 58e866bad9c182294a3edd4cbf66cbb5 94 SUPERFAMILY SSF101125 2 89 5.62E-35 T 12-10-2018 IPR036471 Colicin D superfamily YPK_2802 58e866bad9c182294a3edd4cbf66cbb5 94 Gene3D G3DSA:1.20.120.650 1 89 1.5E-20 T 12-10-2018 IPR036471 Colicin D superfamily YPK_2802 58e866bad9c182294a3edd4cbf66cbb5 94 Pfam PF09204 Bacterial self-protective colicin-like immunity 1 87 8.1E-34 T 12-10-2018 IPR015287 Colicin D immunity protein domain GO:0015643|GO:0030153 YPK_0720 0ff635671c3af4b0360eb8493163b97c 141 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 7 139 2.2E-40 T 12-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 YPK_0720 0ff635671c3af4b0360eb8493163b97c 141 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YPK_0720 0ff635671c3af4b0360eb8493163b97c 141 Pfam PF00460 Flagella basal body rod protein 8 31 4.8E-8 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_0720 0ff635671c3af4b0360eb8493163b97c 141 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 94 138 1.6E-9 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain YPK_3550 274c3a001e168e5dc8628bfa2d5ef314 1164 Gene3D G3DSA:3.40.50.300 124 324 7.6E-7 T 12-10-2018 YPK_3550 274c3a001e168e5dc8628bfa2d5ef314 1164 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 7 1162 0.0 T 12-10-2018 IPR017731 Type VI secretion system, IcmF YPK_3550 274c3a001e168e5dc8628bfa2d5ef314 1164 Pfam PF14331 ImcF-related N-terminal domain 197 377 4.0E-29 T 12-10-2018 IPR025743 ImcF-related, N-terminal domain YPK_3550 274c3a001e168e5dc8628bfa2d5ef314 1164 SUPERFAMILY SSF52540 122 274 2.83E-10 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3550 274c3a001e168e5dc8628bfa2d5ef314 1164 Pfam PF06761 Intracellular multiplication and human macrophage-killing 513 792 9.0E-61 T 12-10-2018 IPR009612 ImcF-related YPK_3550 274c3a001e168e5dc8628bfa2d5ef314 1164 Pfam PF06744 Type VI secretion protein IcmF C-terminal 916 1110 6.5E-54 T 12-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal YPK_2047 05c8c6cbf83eba729a3d60ebe293fc78 268 SUPERFAMILY SSF51366 1 266 3.67E-91 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 YPK_2047 05c8c6cbf83eba729a3d60ebe293fc78 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 5.8E-102 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YPK_2047 05c8c6cbf83eba729a3d60ebe293fc78 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 1.3E-95 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YPK_2047 05c8c6cbf83eba729a3d60ebe293fc78 268 Gene3D G3DSA:3.20.20.70 1 268 3.1E-98 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 YPK_2047 05c8c6cbf83eba729a3d60ebe293fc78 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 12-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YPK_2047 05c8c6cbf83eba729a3d60ebe293fc78 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 37.317 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 YPK_0483 38506d3759974918c4e845c06455592b 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 23.167 T 12-10-2018 IPR012451 Protein of unknown function DUF1656 YPK_0483 38506d3759974918c4e845c06455592b 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 1.2E-20 T 12-10-2018 IPR012451 Protein of unknown function DUF1656 YPK_3659 92c906f8691b1100b8a950eb36752943 106 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 5 89 2.8E-38 T 12-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 YPK_3659 92c906f8691b1100b8a950eb36752943 106 SUPERFAMILY SSF52794 3 99 1.92E-34 T 12-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YPK_3659 92c906f8691b1100b8a950eb36752943 106 Gene3D G3DSA:3.40.50.2300 1 106 1.0E-39 T 12-10-2018 YPK_3659 92c906f8691b1100b8a950eb36752943 106 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 96 4.4E-19 T 12-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YPK_1242 36274dc5ce41ec09c6ef23825ffb4916 399 Pfam PF04865 Baseplate J-like protein 77 184 2.4E-5 T 12-10-2018 IPR006949 Baseplate protein J-like YPK_1466 614883efac4dd8f139288bdf408ed9b1 160 SUPERFAMILY SSF55724 5 155 6.8E-37 T 12-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPK_1466 614883efac4dd8f139288bdf408ed9b1 160 Pfam PF08786 DcrB 12 151 3.8E-34 T 12-10-2018 IPR014894 Protein DcrB YPK_1466 614883efac4dd8f139288bdf408ed9b1 160 Gene3D G3DSA:3.40.1000.10 5 159 1.0E-30 T 12-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich YPK_1198 09cab8f87ced8a76dde4533a4a30a2dd 275 Pfam PF03374 Phage antirepressor protein KilAC domain 166 271 4.0E-28 T 12-10-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 YPK_1198 09cab8f87ced8a76dde4533a4a30a2dd 275 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 45 132 8.6E-11 T 12-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family YPK_2407 382233818591be4d40bf35f0fc0a6040 319 Pfam PF00294 pfkB family carbohydrate kinase 1 294 3.6E-52 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB YPK_2407 382233818591be4d40bf35f0fc0a6040 319 SUPERFAMILY SSF53613 1 302 4.68E-69 T 12-10-2018 IPR029056 Ribokinase-like YPK_2407 382233818591be4d40bf35f0fc0a6040 319 Gene3D G3DSA:3.40.1190.20 2 312 3.7E-70 T 12-10-2018 IPR029056 Ribokinase-like YPK_3954 19781d4174a80f5aa04856f9ba68b1e2 299 SUPERFAMILY SSF103481 35 131 8.5E-8 T 12-10-2018 YPK_3954 19781d4174a80f5aa04856f9ba68b1e2 299 Pfam PF00892 EamA-like transporter family 138 274 9.8E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_3954 19781d4174a80f5aa04856f9ba68b1e2 299 Pfam PF00892 EamA-like transporter family 1 129 4.3E-8 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_3954 19781d4174a80f5aa04856f9ba68b1e2 299 SUPERFAMILY SSF103481 196 276 1.07E-8 T 12-10-2018 YPK_3954 19781d4174a80f5aa04856f9ba68b1e2 299 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 2.1E-83 T 12-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 YPK_0484 54b80b8c0c8c0d3c045b440f79b7ba4a 311 Gene3D G3DSA:2.40.50.100 47 111 2.4E-11 T 12-10-2018 YPK_0484 54b80b8c0c8c0d3c045b440f79b7ba4a 311 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 270 5.1E-31 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 YPK_0484 54b80b8c0c8c0d3c045b440f79b7ba4a 311 Gene3D G3DSA:2.40.30.170 171 295 3.9E-21 T 12-10-2018 YPK_0484 54b80b8c0c8c0d3c045b440f79b7ba4a 311 Pfam PF13533 Biotin-lipoyl like 47 95 8.7E-19 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain YPK_0484 54b80b8c0c8c0d3c045b440f79b7ba4a 311 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 311 56.31 T 12-10-2018 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA YPK_0484 54b80b8c0c8c0d3c045b440f79b7ba4a 311 Pfam PF13437 HlyD family secretion protein 156 240 2.6E-9 T 12-10-2018 YPK_0484 54b80b8c0c8c0d3c045b440f79b7ba4a 311 SUPERFAMILY SSF111369 46 231 1.07E-21 T 12-10-2018 YPK_1446 b65f67732a14ab66e534f02ce3b6869d 411 Gene3D G3DSA:3.90.1150.10 294 391 2.8E-134 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 YPK_1446 b65f67732a14ab66e534f02ce3b6869d 411 SUPERFAMILY SSF53383 10 394 2.18E-107 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase YPK_1446 b65f67732a14ab66e534f02ce3b6869d 411 Pfam PF00155 Aminotransferase class I and II 37 387 5.9E-57 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 YPK_1446 b65f67732a14ab66e534f02ce3b6869d 411 Gene3D G3DSA:3.40.640.10 70 293 2.8E-134 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 YPK_3966 0987e5643cfb32f266ff53c64bc6516d 215 Gene3D G3DSA:2.60.40.10 19 142 3.2E-17 T 12-10-2018 IPR013783 Immunoglobulin-like fold YPK_0183 9324705c4ed13031eda4b5013fbd9b99 408 Pfam PF03406 Phage tail fibre repeat 86 122 8.2E-18 T 12-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 YPK_0183 9324705c4ed13031eda4b5013fbd9b99 408 Gene3D G3DSA:2.60.40.3940 308 408 9.5E-8 T 12-10-2018 YPK_3600 b56d049c51564f02418a24f9fe948a1f 258 Pfam PF03883 Peroxide stress protein YaaA 1 242 3.4E-93 T 12-10-2018 IPR005583 Peroxide stress protein YaaA YPK_3600 b56d049c51564f02418a24f9fe948a1f 258 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.486 T 12-10-2018 IPR005583 Peroxide stress protein YaaA YPK_2310 373d1df67c4cfd3fcb191dcccbd70b03 130 SUPERFAMILY SSF47413 3 63 1.85E-8 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_2310 373d1df67c4cfd3fcb191dcccbd70b03 130 SMART SM00530 8 62 6.0E-4 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_2310 373d1df67c4cfd3fcb191dcccbd70b03 130 Gene3D G3DSA:1.10.260.40 1 65 1.1E-7 T 12-10-2018 YPK_0538 340e6b3e0cad4db6a2d59eece76c899f 117 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 4 116 1.0E-38 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 YPK_0538 340e6b3e0cad4db6a2d59eece76c899f 117 Pfam PF02021 Uncharacterised protein family UPF0102 10 102 1.3E-23 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 YPK_0538 340e6b3e0cad4db6a2d59eece76c899f 117 Hamap MF_00048 UPF0102 protein YraN [yraN]. 3 115 23.456 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 YPK_0538 340e6b3e0cad4db6a2d59eece76c899f 117 SUPERFAMILY SSF52980 4 112 5.79E-21 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 YPK_0538 340e6b3e0cad4db6a2d59eece76c899f 117 Gene3D G3DSA:3.40.1350.10 10 117 7.3E-30 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 YPK_2376 16e880f4004379e01e4965b42f418091 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 65 78 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site YPK_2376 16e880f4004379e01e4965b42f418091 266 Gene3D G3DSA:3.40.190.10 126 225 2.0E-73 T 12-10-2018 YPK_2376 16e880f4004379e01e4965b42f418091 266 SUPERFAMILY SSF53850 15 264 6.73E-78 T 12-10-2018 YPK_2376 16e880f4004379e01e4965b42f418091 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 261 3.6E-73 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_2376 16e880f4004379e01e4965b42f418091 266 SMART SM00062 42 263 2.7E-86 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF YPK_2376 16e880f4004379e01e4965b42f418091 266 Gene3D G3DSA:3.40.190.10 40 260 2.0E-73 T 12-10-2018 YPK_2376 16e880f4004379e01e4965b42f418091 266 SMART SM00079 42 262 6.2E-5 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 YPK_2205 7f6ae35ac636ebbaf48a7f41793fa06e 703 SUPERFAMILY SSF81901 343 519 1.77E-9 T 12-10-2018 YPK_2205 7f6ae35ac636ebbaf48a7f41793fa06e 703 Pfam PF13226 Domain of unknown function (DUF4034) 31 309 6.8E-113 T 12-10-2018 IPR025115 Domain of unknown function DUF4034 YPK_2205 7f6ae35ac636ebbaf48a7f41793fa06e 703 SMART SM00671 484 519 20.0 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2205 7f6ae35ac636ebbaf48a7f41793fa06e 703 SMART SM00671 346 377 140.0 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2205 7f6ae35ac636ebbaf48a7f41793fa06e 703 SMART SM00671 624 660 320.0 T 12-10-2018 IPR006597 Sel1-like repeat YPK_2205 7f6ae35ac636ebbaf48a7f41793fa06e 703 SMART SM00671 415 451 8.5 T 12-10-2018 IPR006597 Sel1-like repeat YPK_0083 d87b535b43c946841644e71e68836ccd 443 Gene3D G3DSA:1.20.1250.20 237 440 1.4E-46 T 12-10-2018 YPK_0083 d87b535b43c946841644e71e68836ccd 443 PIRSF PIRSF002808 6 443 5.2E-143 T 12-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 YPK_0083 d87b535b43c946841644e71e68836ccd 443 SUPERFAMILY SSF103473 17 434 5.36E-82 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_0083 d87b535b43c946841644e71e68836ccd 443 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 7.6E-143 T 12-10-2018 YPK_0083 d87b535b43c946841644e71e68836ccd 443 Pfam PF07690 Major Facilitator Superfamily 36 396 2.0E-49 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_0083 d87b535b43c946841644e71e68836ccd 443 Gene3D G3DSA:1.20.1250.20 19 223 1.1E-51 T 12-10-2018 YPK_2396 397524a12ab35cf7b866387b98321789 450 Gene3D G3DSA:3.30.750.140 295 408 6.6E-38 T 12-10-2018 IPR038610 FliK-like, C-terminal domain superfamily YPK_2396 397524a12ab35cf7b866387b98321789 450 Pfam PF02120 Flagellar hook-length control protein FliK 315 397 1.6E-20 T 12-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal YPK_2396 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 363 386 1.8E-37 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YPK_2396 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 348 363 1.8E-37 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YPK_2396 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 282 304 1.8E-37 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YPK_2396 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 305 327 1.8E-37 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YPK_2396 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 74 91 1.8E-37 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YPK_2396 397524a12ab35cf7b866387b98321789 450 PRINTS PR01007 Flagellar hook-length control protein signature 330 348 1.8E-37 T 12-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 YPK_3460 c10d0addd4de96080e1056cf35dfecef 665 Gene3D G3DSA:1.10.3470.10 10 335 4.7E-70 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_3460 c10d0addd4de96080e1056cf35dfecef 665 Pfam PF01032 FecCD transport family 366 662 6.8E-72 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_3460 c10d0addd4de96080e1056cf35dfecef 665 Pfam PF01032 FecCD transport family 19 328 1.1E-66 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_3460 c10d0addd4de96080e1056cf35dfecef 665 Gene3D G3DSA:1.10.3470.10 345 665 1.0E-76 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_3460 c10d0addd4de96080e1056cf35dfecef 665 SUPERFAMILY SSF81345 10 330 1.22E-59 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_3460 c10d0addd4de96080e1056cf35dfecef 665 SUPERFAMILY SSF81345 349 662 1.7E-69 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_1114 48a23a23f7e76e2df74b5ae26cc9655e 388 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 195 360 2.8E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1114 48a23a23f7e76e2df74b5ae26cc9655e 388 SUPERFAMILY SSF161098 174 356 2.88E-43 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1114 48a23a23f7e76e2df74b5ae26cc9655e 388 Gene3D G3DSA:1.10.3720.10 171 361 3.0E-38 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2564 5fc8588eddcfe547dde6fd80005ee599 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 2.5E-49 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1647 06018af4bae09912bf49f7b8b5983c38 316 TIGRFAM TIGR02565 cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2 4 300 7.8E-126 T 12-10-2018 IPR013398 CRISPR-associated protein Csy2 YPK_1647 06018af4bae09912bf49f7b8b5983c38 316 Pfam PF09614 CRISPR-associated protein (Cas_Csy2) 5 299 7.7E-104 T 12-10-2018 IPR013398 CRISPR-associated protein Csy2 YPK_3283 e981e80ea039d3a8cfd9cbf1c542683a 185 Gene3D G3DSA:3.40.50.150 17 176 1.3E-12 T 12-10-2018 YPK_3283 e981e80ea039d3a8cfd9cbf1c542683a 185 SUPERFAMILY SSF53335 14 167 6.69E-17 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase YPK_3283 e981e80ea039d3a8cfd9cbf1c542683a 185 Pfam PF00398 Ribosomal RNA adenine dimethylase 34 152 1.5E-5 T 12-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm YPK_3105 a067c235f18cfced5190b3620eff26a4 193 Gene3D G3DSA:3.40.50.1010 2 160 9.7E-13 T 12-10-2018 YPK_3105 a067c235f18cfced5190b3620eff26a4 193 SUPERFAMILY SSF88723 2 163 2.66E-10 T 12-10-2018 IPR029060 PIN-like domain superfamily YPK_1817 e18ac6f85173ca1f415cb8f2c532f701 227 Pfam PF01914 MarC family integral membrane protein 9 218 2.2E-62 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YPK_1817 e18ac6f85173ca1f415cb8f2c532f701 227 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 15 215 6.0E-37 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 YPK_0809 1b1eb517586b56b11db029019e0c1ef9 170 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 35 160 5.7E-44 T 12-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal YPK_3592 f3f09e0d54b12a3030d80dff14328bee 394 Pfam PF06965 Na+/H+ antiporter 1 7 380 1.7E-150 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 YPK_3592 f3f09e0d54b12a3030d80dff14328bee 394 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 388 23.614 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 YPK_3592 f3f09e0d54b12a3030d80dff14328bee 394 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 380 7.2E-174 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 YPK_3592 f3f09e0d54b12a3030d80dff14328bee 394 Gene3D G3DSA:1.20.1530.10 2 388 1.2E-155 T 12-10-2018 IPR023171 Na/H antiporter domain superfamily YPK_2751 d8a8dedf5cd9b1fd04e67dded714c144 389 Pfam PF01497 Periplasmic binding protein 115 329 2.3E-23 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain YPK_2751 d8a8dedf5cd9b1fd04e67dded714c144 389 Gene3D G3DSA:3.40.50.1980 39 385 6.0E-108 T 12-10-2018 YPK_2751 d8a8dedf5cd9b1fd04e67dded714c144 389 SUPERFAMILY SSF53807 42 377 1.31E-54 T 12-10-2018 YPK_2342 337f5f70390e0d0cc0263bbf0124f57e 117 Gene3D G3DSA:3.10.450.40 4 116 2.2E-21 T 12-10-2018 YPK_2342 337f5f70390e0d0cc0263bbf0124f57e 117 SUPERFAMILY SSF160719 16 114 1.83E-29 T 12-10-2018 YPK_2342 337f5f70390e0d0cc0263bbf0124f57e 117 Pfam PF04965 Gene 25-like lysozyme 20 97 9.6E-16 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_0556 7e3d658b54d431cf01dc48bfa7f5ad2d 496 Gene3D G3DSA:3.90.1210.30 3 85 8.0E-25 T 12-10-2018 YPK_0556 7e3d658b54d431cf01dc48bfa7f5ad2d 496 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 109 495 5.3E-155 T 12-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 YPK_0556 7e3d658b54d431cf01dc48bfa7f5ad2d 496 SMART SM00858 11 82 3.9E-12 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 YPK_0556 7e3d658b54d431cf01dc48bfa7f5ad2d 496 Pfam PF08666 SAF domain 11 80 1.4E-11 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 YPK_4120 d67835e9290ffd49bd023da7c8602a13 245 Pfam PF02585 GlcNAc-PI de-N-acetylase 10 138 3.9E-22 T 12-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 YPK_4120 d67835e9290ffd49bd023da7c8602a13 245 Gene3D G3DSA:3.40.50.10320 6 245 4.1E-96 T 12-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 YPK_4120 d67835e9290ffd49bd023da7c8602a13 245 SUPERFAMILY SSF102588 6 244 1.01E-50 T 12-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 YPK_2194 9f6a98977db54dc606548faa5d49e190 140 Gene3D G3DSA:1.20.1290.10 14 140 5.4E-38 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YPK_2194 9f6a98977db54dc606548faa5d49e190 140 SUPERFAMILY SSF69118 38 138 1.44E-30 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 YPK_2194 9f6a98977db54dc606548faa5d49e190 140 Pfam PF02627 Carboxymuconolactone decarboxylase family 50 134 2.6E-22 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 YPK_0271 1ea0a0a6bb91a04b89d2f07908f2d9f1 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 26 141 6.0E-63 T 12-10-2018 IPR013559 YheO-like YPK_0271 1ea0a0a6bb91a04b89d2f07908f2d9f1 240 Pfam PF13309 HTH domain 171 228 3.2E-19 T 12-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain YPK_0271 1ea0a0a6bb91a04b89d2f07908f2d9f1 240 Pfam PF08348 YheO-like PAS domain 29 137 6.2E-36 T 12-10-2018 IPR013559 YheO-like YPK_0981 df81c25565f44ba135e90c51b337e6a7 192 Gene3D G3DSA:3.40.50.880 1 183 5.3E-41 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_0981 df81c25565f44ba135e90c51b337e6a7 192 SUPERFAMILY SSF52317 3 172 5.6E-39 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like YPK_0981 df81c25565f44ba135e90c51b337e6a7 192 Pfam PF01965 DJ-1/PfpI family 3 165 3.4E-31 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 YPK_0734 ed6ab4a9b1df816f550219a42833df8e 123 Pfam PF05656 Protein of unknown function (DUF805) 19 121 9.6E-15 T 12-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 YPK_3279 96d1351cefcf1f1f255bc10e5800b6d8 304 Gene3D G3DSA:3.30.420.40 119 289 1.1E-78 T 12-10-2018 YPK_3279 96d1351cefcf1f1f255bc10e5800b6d8 304 SUPERFAMILY SSF53067 2 300 2.91E-60 T 12-10-2018 YPK_3279 96d1351cefcf1f1f255bc10e5800b6d8 304 ProSitePatterns PS01125 ROK family signature. 130 157 - T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_3279 96d1351cefcf1f1f255bc10e5800b6d8 304 Pfam PF00480 ROK family 3 300 3.0E-84 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 YPK_3279 96d1351cefcf1f1f255bc10e5800b6d8 304 Gene3D G3DSA:3.30.420.40 4 296 1.1E-78 T 12-10-2018 YPK_0064 5ceffdb2991116dffc885c3c88e4f4b1 371 Pfam PF03235 Protein of unknown function DUF262 35 182 7.0E-23 T 12-10-2018 IPR004919 Domain of unknown function DUF262 YPK_1434 55d4aff7af36db8a0716767dd0d44864 115 Pfam PF14282 FlxA-like protein 13 107 1.0E-23 T 12-10-2018 IPR025577 FlxA-like protein YPK_0959 b3a171321151815ba70e0c2629d66bea 88 Pfam PF05488 PAAR motif 8 77 1.5E-22 T 12-10-2018 IPR008727 PAAR motif YPK_0959 b3a171321151815ba70e0c2629d66bea 88 Gene3D G3DSA:2.60.200.60 2 85 2.1E-10 T 12-10-2018 YPK_0389 cac6bdd5025dee3978d7e31106890353 606 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 3 606 9.7E-208 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_0389 cac6bdd5025dee3978d7e31106890353 606 Pfam PF05947 Type VI secretion system, TssF 5 605 5.4E-193 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_0389 cac6bdd5025dee3978d7e31106890353 606 PIRSF PIRSF028304 1 606 9.2E-184 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like YPK_1885 50ee570cc0dc1171a3bce4fd3aa2ef06 196 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 8.5E-47 T 12-10-2018 IPR009698 Protein of unknown function DUF1282 YPK_3281 86d201e8eb4b19d1b44654d247835418 95 Gene3D G3DSA:2.60.120.10 1 94 9.3E-32 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_3281 86d201e8eb4b19d1b44654d247835418 95 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 1.6E-32 T 12-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 YPK_3281 86d201e8eb4b19d1b44654d247835418 95 SUPERFAMILY SSF51182 1 94 1.53E-31 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_3281 86d201e8eb4b19d1b44654d247835418 95 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 94 24.979 T 12-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 YPK_2375 4c03dd4098334018af359cb169a271ed 220 SUPERFAMILY SSF161098 13 206 2.75E-49 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2375 4c03dd4098334018af359cb169a271ed 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 3.6E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2375 4c03dd4098334018af359cb169a271ed 220 Gene3D G3DSA:1.10.3720.10 4 219 3.5E-61 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2375 4c03dd4098334018af359cb169a271ed 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 2.2E-33 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_2025 fa2b0ab0f7b1552452694849ba9a5ea7 99 Gene3D G3DSA:1.10.1220.10 1 47 8.6E-7 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 YPK_2025 fa2b0ab0f7b1552452694849ba9a5ea7 99 SUPERFAMILY SSF47598 1 44 4.08E-8 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 YPK_2896 22d451fb2813bdbfc87dbec3b7a52745 77 Gene3D G3DSA:3.30.420.470 1 76 5.4E-8 T 12-10-2018 YPK_2896 22d451fb2813bdbfc87dbec3b7a52745 77 Pfam PF13358 DDE superfamily endonuclease 2 70 9.5E-15 T 12-10-2018 IPR038717 Tc1-like transposase, DDE domain YPK_2659 2fc28b6c4af92d8e948451b91c3ba9b7 297 Pfam PF03881 Fructosamine kinase 32 273 9.5E-8 T 12-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 YPK_2659 2fc28b6c4af92d8e948451b91c3ba9b7 297 Gene3D G3DSA:3.90.1200.10 108 293 4.2E-9 T 12-10-2018 YPK_2659 2fc28b6c4af92d8e948451b91c3ba9b7 297 SUPERFAMILY SSF56112 15 269 4.34E-17 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily YPK_2500 743d9e5cb760f0f088db1de9f3f8e3c2 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 1.8E-57 T 12-10-2018 IPR018636 Protein of unknown function DUF2058 YPK_3058 71a2efa595e4adb9074397160d4dab8f 146 Pfam PF06836 Protein of unknown function (DUF1240) 52 145 3.6E-38 T 12-10-2018 IPR010665 Protein of unknown function DUF1240 YPK_3774 7d3845f09043e054cfdbc33442365df1 187 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 23 183 2.2E-76 T 12-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YPK_3774 7d3845f09043e054cfdbc33442365df1 187 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 185 2.7E-81 T 12-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ YPK_3774 7d3845f09043e054cfdbc33442365df1 187 Gene3D G3DSA:3.40.30.10 38 185 3.1E-7 T 12-10-2018 YPK_3774 7d3845f09043e054cfdbc33442365df1 187 SUPERFAMILY SSF52833 49 181 2.87E-5 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_2713 b156399faa7b0f7802c2feee3147d610 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 214 1.0E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2713 b156399faa7b0f7802c2feee3147d610 222 SUPERFAMILY SSF161098 6 200 1.83E-28 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2713 b156399faa7b0f7802c2feee3147d610 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 110 2.9E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 YPK_2713 b156399faa7b0f7802c2feee3147d610 222 Gene3D G3DSA:1.10.3720.10 1 216 1.1E-38 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0904 4ea185dc8f7ab6b5733e1453bbbfa5f2 379 Pfam PF10758 Protein of unknown function (DUF2586) 3 372 4.7E-177 T 12-10-2018 IPR019694 Bacteriophage HP1, Orf23 YPK_3390 1bd893ba8c82c13df43929db5845ca49 176 Pfam PF01292 Prokaryotic cytochrome b561 5 172 1.3E-19 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 YPK_3390 1bd893ba8c82c13df43929db5845ca49 176 SUPERFAMILY SSF81342 3 172 3.69E-24 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 YPK_1960 11589bf5615987f3765a651ae598d860 217 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 24 214 1.8E-50 T 12-10-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YPK_1960 11589bf5615987f3765a651ae598d860 217 SUPERFAMILY SSF141318 53 217 7.19E-51 T 12-10-2018 IPR036215 TM0957-like superfamily YPK_1960 11589bf5615987f3765a651ae598d860 217 PIRSF PIRSF033535 7 217 5.6E-52 T 12-10-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein YPK_0470 1cc80356e0cbf0d6549fa1a4f4c9960b 1307 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 2 1304 0.0 T 12-10-2018 IPR011836 Conserved hypothetical protein CHP02099 YPK_0470 1cc80356e0cbf0d6549fa1a4f4c9960b 1307 Pfam PF13116 Protein of unknown function 511 795 5.3E-98 T 12-10-2018 IPR025263 Domain of unknown function DUF3971 YPK_0470 1cc80356e0cbf0d6549fa1a4f4c9960b 1307 Pfam PF13502 AsmA-like C-terminal region 1051 1293 3.1E-60 T 12-10-2018 IPR032712 AsmA-like, C-terminal YPK_2925 7f49cc6200c1de1e495a8d5ae32bc862 81 Pfam PF09905 DNA-binding protein VF530 7 68 7.9E-35 T 12-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 YPK_2925 7f49cc6200c1de1e495a8d5ae32bc862 81 Gene3D G3DSA:1.10.720.30 14 73 3.2E-31 T 12-10-2018 IPR036361 SAP domain superfamily YPK_0392 bab78aad26833ffda2a9216f438d3e42 181 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 18 171 4.5E-36 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YPK_0392 bab78aad26833ffda2a9216f438d3e42 181 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 10 174 6.3E-38 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YPK_0392 bab78aad26833ffda2a9216f438d3e42 181 Gene3D G3DSA:2.60.40.4150 44 179 7.2E-30 T 12-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily YPK_3025 565559992bb320543a67f2f490ad5769 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 7.1E-31 T 12-10-2018 IPR007454 Uncharacterised protein family UPF0250 YPK_3025 565559992bb320543a67f2f490ad5769 87 SUPERFAMILY SSF117991 1 87 3.92E-32 T 12-10-2018 IPR027471 YbeD-like domain superfamily YPK_3025 565559992bb320543a67f2f490ad5769 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 26.956 T 12-10-2018 IPR007454 Uncharacterised protein family UPF0250 YPK_3025 565559992bb320543a67f2f490ad5769 87 Gene3D G3DSA:3.30.70.260 1 87 1.3E-35 T 12-10-2018 YPK_3307 d8435b5d272d43ee75044fbc9608f3f8 257 SUPERFAMILY SSF56235 2 252 3.75E-51 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_3307 d8435b5d272d43ee75044fbc9608f3f8 257 Pfam PF13230 Glutamine amidotransferases class-II 1 253 1.2E-113 T 12-10-2018 IPR026869 Putative glutamine amidotransferase type 2 YPK_3307 d8435b5d272d43ee75044fbc9608f3f8 257 Gene3D G3DSA:3.60.20.10 1 256 1.6E-97 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal YPK_2127 195d09994056e56aa2dcb554630d7ae3 232 Gene3D G3DSA:3.30.420.40 96 190 5.2E-83 T 12-10-2018 YPK_2127 195d09994056e56aa2dcb554630d7ae3 232 Gene3D G3DSA:3.30.420.40 5 224 5.2E-83 T 12-10-2018 YPK_2127 195d09994056e56aa2dcb554630d7ae3 232 SUPERFAMILY SSF53067 5 107 3.88E-30 T 12-10-2018 YPK_2127 195d09994056e56aa2dcb554630d7ae3 232 Pfam PF00814 Glycoprotease family 30 133 1.6E-28 T 12-10-2018 IPR000905 Gcp-like domain YPK_2127 195d09994056e56aa2dcb554630d7ae3 232 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 221 1.7E-67 T 12-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 YPK_2127 195d09994056e56aa2dcb554630d7ae3 232 SUPERFAMILY SSF53067 110 219 4.14E-28 T 12-10-2018 YPK_1498 4ae5871360756b7aec63822ecd95c6cc 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 1.4E-82 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1498 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 6.8E-63 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1498 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 6.8E-63 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1498 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 6.8E-63 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1498 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 6.8E-63 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1498 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 6.8E-63 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1498 4ae5871360756b7aec63822ecd95c6cc 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 6.8E-63 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 YPK_1498 4ae5871360756b7aec63822ecd95c6cc 245 Pfam PF01578 Cytochrome C assembly protein 29 184 1.6E-31 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 YPK_3873 050afd9551a756d81f171b8a01f8ea3a 192 Pfam PF02342 TerD domain 1 187 1.8E-86 T 12-10-2018 IPR003325 TerD domain YPK_3873 050afd9551a756d81f171b8a01f8ea3a 192 Gene3D G3DSA:2.60.60.30 19 186 1.7E-79 T 12-10-2018 YPK_3311 9f76996c23fe9dea751fe8bd1b2111cd 617 Gene3D G3DSA:3.40.50.2000 405 585 1.0E-126 T 12-10-2018 YPK_3311 9f76996c23fe9dea751fe8bd1b2111cd 617 Gene3D G3DSA:3.40.50.11380 265 404 1.0E-126 T 12-10-2018 YPK_0391 d612df23227249691aa6bb634cb5db80 438 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 8 431 1.2E-111 T 12-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein YPK_0391 d612df23227249691aa6bb634cb5db80 438 SUPERFAMILY SSF49879 31 104 3.23E-5 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 YPK_3579 7a414036476760cba4f3bf26e9630788 154 Hamap MF_01191 UPF0442 protein YjjB [yjjB]. 1 154 35.555 T 12-10-2018 IPR020914 Uncharacterised protein family UPF0442 YPK_3579 7a414036476760cba4f3bf26e9630788 154 Pfam PF12821 Threonine/Serine exporter, ThrE 10 144 2.8E-36 T 12-10-2018 IPR024528 Threonine/Serine exporter, ThrE YPK_0353 5acf6fe22513978049f2a1098697eb3e 196 Pfam PF04222 Protein of unknown function (DUF416) 5 193 1.4E-76 T 12-10-2018 IPR007338 Protein of unknown function DUF416 YPK_0353 5acf6fe22513978049f2a1098697eb3e 196 Gene3D G3DSA:1.20.1590.10 3 194 5.2E-64 T 12-10-2018 IPR023381 YP001051499.1-like domain superfamily YPK_1660 4554dda5985ea17d3f2b349ffb030995 127 Pfam PF01757 Acyltransferase family 1 103 9.4E-8 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 YPK_3658 5a6e7ef1e02dcdf5114356b052d31429 360 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 9 335 1.3E-91 T 12-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 YPK_3658 5a6e7ef1e02dcdf5114356b052d31429 360 Pfam PF02378 Phosphotransferase system, EIIC 17 282 5.6E-13 T 12-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 YPK_1611 4bc1aeb6043c1e9602449d88abcbaabd 305 Gene3D G3DSA:3.40.50.2300 128 299 6.2E-75 T 12-10-2018 YPK_1611 4bc1aeb6043c1e9602449d88abcbaabd 305 Gene3D G3DSA:3.40.50.2300 36 288 6.2E-75 T 12-10-2018 YPK_1611 4bc1aeb6043c1e9602449d88abcbaabd 305 Pfam PF13407 Periplasmic binding protein domain 31 276 2.2E-54 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_1611 4bc1aeb6043c1e9602449d88abcbaabd 305 SUPERFAMILY SSF53822 16 300 7.74E-72 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_2272 361aa33f5a7f20b293dec83b6f1327ea 176 Pfam PF00419 Fimbrial protein 26 175 5.3E-11 T 12-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 YPK_2272 361aa33f5a7f20b293dec83b6f1327ea 176 Gene3D G3DSA:2.60.40.1090 22 176 2.9E-26 T 12-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 YPK_2272 361aa33f5a7f20b293dec83b6f1327ea 176 SUPERFAMILY SSF49401 25 175 5.97E-26 T 12-10-2018 IPR008966 Adhesion domain superfamily YPK_0652 06bfaeb3ed7aea6f00e9b63191e15060 228 Pfam PF06693 Protein of unknown function (DUF1190) 42 212 4.8E-55 T 12-10-2018 IPR009576 Biofilm formation YgiB YPK_0652 06bfaeb3ed7aea6f00e9b63191e15060 228 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 2 228 48.582 T 12-10-2018 IPR009576 Biofilm formation YgiB YPK_0678 a34e55e052d1c1efb9e6ef4aa040541c 157 Pfam PF07811 TadE-like protein 15 56 3.9E-8 T 12-10-2018 IPR012495 TadE-like YPK_1581 3c8c57ead0f90048ac552e18f5d14979 171 SUPERFAMILY SSF143744 14 152 3.79E-23 T 12-10-2018 IPR038084 GlcG-like domain superfamily YPK_1581 3c8c57ead0f90048ac552e18f5d14979 171 Pfam PF03928 Haem-degrading 22 147 4.1E-26 T 12-10-2018 IPR005624 Haem-degrading YPK_1581 3c8c57ead0f90048ac552e18f5d14979 171 Hamap MF_00761 UPF0303 protein . 2 155 34.769 T 12-10-2018 IPR010371 Uncharacterised protein family UPF0303 YPK_1581 3c8c57ead0f90048ac552e18f5d14979 171 Gene3D G3DSA:3.30.450.150 1 155 1.7E-43 T 12-10-2018 IPR038084 GlcG-like domain superfamily YPK_1581 3c8c57ead0f90048ac552e18f5d14979 171 PIRSF PIRSF008757 1 164 1.5E-62 T 12-10-2018 IPR010371 Uncharacterised protein family UPF0303 YPK_1093 c473a17da77ca5fbb11b74e33bfbe928 135 Gene3D G3DSA:3.30.110.70 31 135 1.2E-37 T 12-10-2018 YPK_1093 c473a17da77ca5fbb11b74e33bfbe928 135 Pfam PF16358 RcsF lipoprotein 39 133 2.5E-52 T 12-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 YPK_1093 c473a17da77ca5fbb11b74e33bfbe928 135 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 134 36.311 T 12-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 YPK_0263 2671c5ef7caa7552805c565e3b55dd94 341 Gene3D G3DSA:3.90.550.10 5 217 2.9E-44 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_0263 2671c5ef7caa7552805c565e3b55dd94 341 Pfam PF00535 Glycosyl transferase family 2 7 133 9.0E-30 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 YPK_0263 2671c5ef7caa7552805c565e3b55dd94 341 SUPERFAMILY SSF53448 6 244 1.9E-49 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases YPK_0964 506b3f3e963827717419ce107a5c1308 333 SUPERFAMILY SSF53822 27 330 1.78E-65 T 12-10-2018 IPR028082 Periplasmic binding protein-like I YPK_0964 506b3f3e963827717419ce107a5c1308 333 Gene3D G3DSA:3.40.50.2300 131 267 5.6E-65 T 12-10-2018 YPK_0964 506b3f3e963827717419ce107a5c1308 333 Pfam PF13407 Periplasmic binding protein domain 29 287 6.9E-44 T 12-10-2018 IPR025997 Periplasmic binding protein YPK_0964 506b3f3e963827717419ce107a5c1308 333 Gene3D G3DSA:3.40.50.2300 28 294 5.6E-65 T 12-10-2018 YPK_4142 ed37b55e6819bd026956aba95ab195a6 450 SUPERFAMILY SSF51261 281 448 2.49E-46 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_4142 ed37b55e6819bd026956aba95ab195a6 450 Gene3D G3DSA:2.70.70.10 310 450 2.6E-38 T 12-10-2018 IPR011055 Duplicated hybrid motif YPK_4142 ed37b55e6819bd026956aba95ab195a6 450 Pfam PF01551 Peptidase family M23 351 444 8.1E-26 T 12-10-2018 IPR016047 Peptidase M23 YPK_1987 f3f487316c1586205d082d90795f411d 514 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 470 4.6E-141 T 12-10-2018 IPR010352 Protein of unknown function DUF945 YPK_0030 3b5dc3ffe5e2b7fef8e6dd386bebd33d 118 Gene3D G3DSA:3.30.1370.150 59 118 1.1E-34 T 12-10-2018 YPK_0030 3b5dc3ffe5e2b7fef8e6dd386bebd33d 118 Gene3D G3DSA:4.10.860.10 1 58 5.0E-13 T 12-10-2018 YPK_0030 3b5dc3ffe5e2b7fef8e6dd386bebd33d 118 Pfam PF10928 Protein of unknown function (DUF2810) 64 116 8.1E-33 T 12-10-2018 IPR021230 Protein of unknown function DUF2810 YPK_1792 fd9499ca5e97c9d63c368a7149081a48 388 Pfam PF14583 Oligogalacturonate lyase 1 386 6.8E-260 T 12-10-2018 IPR027946 Oligogalacturonate lyase domain GO:0045490|GO:0047487 KEGG: 00040+4.2.2.6 YPK_1792 fd9499ca5e97c9d63c368a7149081a48 388 SUPERFAMILY SSF82171 15 382 3.4E-30 T 12-10-2018 YPK_1792 fd9499ca5e97c9d63c368a7149081a48 388 Gene3D G3DSA:2.130.10.10 1 388 2.4E-168 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 YPK_3597 99be1463cb551adb0dfd174d1c63237f 462 Pfam PF07690 Major Facilitator Superfamily 82 408 7.4E-29 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3597 99be1463cb551adb0dfd174d1c63237f 462 SUPERFAMILY SSF103473 19 442 5.49E-66 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3597 99be1463cb551adb0dfd174d1c63237f 462 Gene3D G3DSA:1.20.1250.20 36 450 1.1E-58 T 12-10-2018 YPK_1901 f9e9eae116cee3014d7b8d3d446688a6 148 Pfam PF09722 Protein of unknown function (DUF2384) 94 145 4.1E-14 T 12-10-2018 IPR024467 Domain of unknown function DUF2384 YPK_1901 f9e9eae116cee3014d7b8d3d446688a6 148 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 15 147 1.1E-54 T 12-10-2018 IPR011979 Conserved hypothetical protein CHP02293 YPK_0485 f374b66684a69a6305aab915e7e7271c 651 Pfam PF04632 Fusaric acid resistance protein family 8 649 6.1E-171 T 12-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 YPK_0485 f374b66684a69a6305aab915e7e7271c 651 Hamap MF_01545 p-hydroxybenzoic acid efflux pump subunit AaeB [aaeB]. 1 651 55.618 T 12-10-2018 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0046942 YPK_0106 de8ce55ad88f0ba374b76446d730d523 366 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 49 321 5.1E-121 T 12-10-2018 IPR005274 Inner membrane protein YhjD YPK_0106 de8ce55ad88f0ba374b76446d730d523 366 Pfam PF03631 Virulence factor BrkB 63 320 1.1E-45 T 12-10-2018 IPR017039 Virulence factor BrkB YPK_0106 de8ce55ad88f0ba374b76446d730d523 366 PIRSF PIRSF035875 34 333 1.1E-23 T 12-10-2018 IPR017039 Virulence factor BrkB YPK_0369 9b10c942d91616facf48a0c9ea4d0c42 261 Pfam PF13332 Haemagluttinin repeat 1 31 5.3E-5 T 12-10-2018 IPR025157 Hemagglutinin repeat YPK_1967 d584b9e65a446a4a3ea6603f0934a91c 484 Pfam PF03553 Na+/H+ antiporter family 159 463 3.6E-55 T 12-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 YPK_1967 d584b9e65a446a4a3ea6603f0934a91c 484 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 9 469 7.6E-156 T 12-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 YPK_1638 910f0d26eb2a25977d0afc520218e3d6 312 SUPERFAMILY SSF75005 23 310 9.42E-57 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YPK_1638 910f0d26eb2a25977d0afc520218e3d6 312 Gene3D G3DSA:2.115.10.20 15 311 3.6E-113 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily YPK_1638 910f0d26eb2a25977d0afc520218e3d6 312 Pfam PF08950 Protein of unknown function (DUF1861) 22 310 1.8E-124 T 12-10-2018 IPR015045 Protein of unknown function DUF1861 YPK_0905 4f39840ee19217dd87fa64e609cfab06 150 Pfam PF10772 Protein of unknown function (DUF2597) 8 140 8.6E-60 T 12-10-2018 IPR019708 Bacteriophage HP1, Orf24 YPK_1374 98335622b917a6cfbe6394f2c283d35d 157 SUPERFAMILY SSF48452 8 123 1.42E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_1374 98335622b917a6cfbe6394f2c283d35d 157 Pfam PF12688 Tetratrico peptide repeat 35 153 7.9E-11 T 12-10-2018 YPK_1374 98335622b917a6cfbe6394f2c283d35d 157 Gene3D G3DSA:1.25.40.10 1 154 2.1E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3722 628759738f8ff7de2f1077aa34b9f281 103 SUPERFAMILY SSF47413 30 92 7.78E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_3722 628759738f8ff7de2f1077aa34b9f281 103 SMART SM00530 39 94 7.7E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_3722 628759738f8ff7de2f1077aa34b9f281 103 Pfam PF01381 Helix-turn-helix 42 91 2.9E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 YPK_3722 628759738f8ff7de2f1077aa34b9f281 103 Gene3D G3DSA:1.10.260.40 11 97 4.6E-15 T 12-10-2018 YPK_1308 d1208f2456da1237a858d89259f0d144 131 Pfam PF06836 Protein of unknown function (DUF1240) 37 131 3.7E-41 T 12-10-2018 IPR010665 Protein of unknown function DUF1240 YPK_2083 7de91b4e075f614b2b71b210d2b91c65 286 Gene3D G3DSA:1.10.10.10 3 91 6.2E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily YPK_2083 7de91b4e075f614b2b71b210d2b91c65 286 SUPERFAMILY SSF46785 5 79 3.47E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily YPK_2083 7de91b4e075f614b2b71b210d2b91c65 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.9E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 YPK_3323 3ca9769fbe6002dc43d94c830fc9a501 256 Pfam PF00795 Carbon-nitrogen hydrolase 6 241 2.6E-28 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 YPK_3323 3ca9769fbe6002dc43d94c830fc9a501 256 SUPERFAMILY SSF56317 1 249 1.14E-58 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_3323 3ca9769fbe6002dc43d94c830fc9a501 256 Gene3D G3DSA:3.60.110.10 1 256 1.5E-79 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily YPK_0789 afdb0d8f57676d25fd5e06a8362cf91c 277 Pfam PF00775 Dioxygenase 71 167 5.1E-8 T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 YPK_0789 afdb0d8f57676d25fd5e06a8362cf91c 277 SUPERFAMILY SSF49482 43 261 1.31E-44 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 YPK_0789 afdb0d8f57676d25fd5e06a8362cf91c 277 Gene3D G3DSA:2.60.130.10 7 224 1.0E-42 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 YPK_4116 b64c77ae1b61f641b690f6b4f2a3398c 122 Pfam PF05656 Protein of unknown function (DUF805) 4 110 1.3E-13 T 12-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 YPK_3648 579b4b85fbbf59ea65f42c1b7f67cdcf 530 SUPERFAMILY SSF53067 262 512 3.06E-48 T 12-10-2018 YPK_3648 579b4b85fbbf59ea65f42c1b7f67cdcf 530 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 13 260 6.4E-47 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 YPK_3648 579b4b85fbbf59ea65f42c1b7f67cdcf 530 Gene3D G3DSA:3.30.420.40 7 251 1.0E-60 T 12-10-2018 YPK_3648 579b4b85fbbf59ea65f42c1b7f67cdcf 530 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 291 467 9.1E-20 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 YPK_3648 579b4b85fbbf59ea65f42c1b7f67cdcf 530 Hamap MF_02053 Autoinducer-2 kinase [lsrK]. 15 530 91.162 T 12-10-2018 IPR033676 Autoinducer-2 kinase GO:0009372|GO:0071518 YPK_3648 579b4b85fbbf59ea65f42c1b7f67cdcf 530 Gene3D G3DSA:3.30.420.40 253 517 1.6E-51 T 12-10-2018 YPK_3648 579b4b85fbbf59ea65f42c1b7f67cdcf 530 SUPERFAMILY SSF53067 13 263 1.94E-57 T 12-10-2018 YPK_3648 579b4b85fbbf59ea65f42c1b7f67cdcf 530 PIRSF PIRSF000538 11 518 2.3E-113 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 YPK_3634 8c7b3332eb91e56a2a436faef2c2c78a 147 Gene3D G3DSA:3.40.630.30 1 147 3.9E-47 T 12-10-2018 YPK_3634 8c7b3332eb91e56a2a436faef2c2c78a 147 SUPERFAMILY SSF55729 3 145 2.74E-32 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_3634 8c7b3332eb91e56a2a436faef2c2c78a 147 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 142 1.4E-44 T 12-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 YPK_3634 8c7b3332eb91e56a2a436faef2c2c78a 147 Pfam PF00583 Acetyltransferase (GNAT) family 15 120 1.5E-17 T 12-10-2018 IPR000182 GNAT domain YPK_1892 4bff23ffe77ad064a4505fd71b16cbe6 547 Gene3D G3DSA:3.90.76.10 47 219 1.7E-152 T 12-10-2018 YPK_1892 4bff23ffe77ad064a4505fd71b16cbe6 547 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 85 107 - T 12-10-2018 IPR023765 Solute-binding protein family 5, conserved site YPK_1892 4bff23ffe77ad064a4505fd71b16cbe6 547 Gene3D G3DSA:3.10.105.10 299 516 1.7E-152 T 12-10-2018 YPK_1892 4bff23ffe77ad064a4505fd71b16cbe6 547 PIRSF PIRSF002741 1 543 3.7E-102 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 YPK_1892 4bff23ffe77ad064a4505fd71b16cbe6 547 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 458 1.8E-88 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain YPK_1892 4bff23ffe77ad064a4505fd71b16cbe6 547 SUPERFAMILY SSF53850 37 538 4.16E-139 T 12-10-2018 YPK_1892 4bff23ffe77ad064a4505fd71b16cbe6 547 Gene3D G3DSA:3.40.190.10 220 528 1.7E-152 T 12-10-2018 YPK_1716 a19ea1265e85811756f21ffb3dd79fd7 192 SUPERFAMILY SSF56925 12 152 1.12E-10 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_1716 a19ea1265e85811756f21ffb3dd79fd7 192 Pfam PF13505 Outer membrane protein beta-barrel domain 10 192 6.6E-8 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel YPK_2611 8cfdc9bd6460182c5a2831123dd66e59 174 Pfam PF07977 FabA-like domain 36 165 2.3E-15 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 YPK_2611 8cfdc9bd6460182c5a2831123dd66e59 174 SUPERFAMILY SSF54637 32 170 3.55E-27 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_2611 8cfdc9bd6460182c5a2831123dd66e59 174 Gene3D G3DSA:3.10.129.10 25 173 1.6E-33 T 12-10-2018 YPK_2817 b280376cd13dd29660634f55a98231d7 99 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 9 88 1.6E-15 T 12-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative YPK_2054 e14c0f10b5f1592b22c441d586064e53 149 SUPERFAMILY SSF54637 15 137 4.84E-39 T 12-10-2018 IPR029069 HotDog domain superfamily YPK_2054 e14c0f10b5f1592b22c441d586064e53 149 Pfam PF03061 Thioesterase superfamily 33 104 4.1E-18 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 YPK_2054 e14c0f10b5f1592b22c441d586064e53 149 Gene3D G3DSA:3.10.129.10 1 145 3.8E-44 T 12-10-2018 YPK_0009 14139d5973962c8630f5fe79a08b9359 433 Gene3D G3DSA:2.120.10.30 313 433 2.2E-19 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like YPK_0009 14139d5973962c8630f5fe79a08b9359 433 Pfam PF07676 WD40-like Beta Propeller Repeat 407 428 0.067 T 12-10-2018 IPR011659 WD40-like Beta Propeller YPK_0009 14139d5973962c8630f5fe79a08b9359 433 SUPERFAMILY SSF82171 28 432 4.71E-21 T 12-10-2018 YPK_0009 14139d5973962c8630f5fe79a08b9359 433 Pfam PF12566 Protein of unknown function (DUF3748) 73 193 6.8E-57 T 12-10-2018 IPR022223 Protein of unknown function DUF3748 YPK_0647 7cd90199f27aa7edd031f861de2aac35 93 Pfam PF04380 Membrane fusogenic activity 1 78 2.9E-28 T 12-10-2018 IPR007475 Membrane fusogenic activity YPK_3909 47f1744901cbf7d24a937a8e5152d094 197 Pfam PF13327 Type III secretion system subunit 10 171 1.9E-64 T 12-10-2018 IPR025292 Type III secretion system protein YPK_0680 38f46abd1cc5c18f3f0151dd5cb0cbd5 277 Pfam PF00482 Type II secretion system (T2SS), protein F 135 263 6.5E-10 T 12-10-2018 IPR018076 Type II secretion system F domain YPK_2511 038bda3636ea42893fbf625f3c048a57 140 Pfam PF04134 Protein of unknown function, DUF393 15 124 4.1E-34 T 12-10-2018 IPR007263 Protein of unknown function DUF393 YPK_3738 524f9a37afb9fd3e90e1f58a348a1b3b 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 1.3E-22 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 YPK_3738 524f9a37afb9fd3e90e1f58a348a1b3b 97 SUPERFAMILY SSF75471 1 96 7.19E-31 T 12-10-2018 IPR035920 YhbY-like superfamily YPK_3738 524f9a37afb9fd3e90e1f58a348a1b3b 97 Gene3D G3DSA:3.30.110.60 1 97 7.6E-37 T 12-10-2018 IPR035920 YhbY-like superfamily YPK_3738 524f9a37afb9fd3e90e1f58a348a1b3b 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 94 5.6E-38 T 12-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 YPK_3738 524f9a37afb9fd3e90e1f58a348a1b3b 97 SMART SM01103 3 86 7.0E-41 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 YPK_3738 524f9a37afb9fd3e90e1f58a348a1b3b 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 2.0E-44 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 YPK_3203 3ea94065115fd7e6a8e6aebc948fd956 51 Pfam PF10689 Protein of unknown function (DUF2496) 2 44 1.5E-23 T 12-10-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related YPK_3958 88138ae0d62f1ab918d5a845a6b31361 249 SUPERFAMILY SSF51695 6 242 1.07E-61 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_3958 88138ae0d62f1ab918d5a845a6b31361 249 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 13 240 2.5E-39 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YPK_3958 88138ae0d62f1ab918d5a845a6b31361 249 Gene3D G3DSA:3.20.20.190 10 237 4.7E-80 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_0876 d49ca5fb44c56e7bd6256343949746e1 88 SUPERFAMILY SSF109910 2 78 1.2E-27 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily YPK_0876 d49ca5fb44c56e7bd6256343949746e1 88 Gene3D G3DSA:1.10.150.250 1 88 7.4E-39 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily YPK_0876 d49ca5fb44c56e7bd6256343949746e1 88 Pfam PF03937 Flavinator of succinate dehydrogenase 6 76 9.7E-26 T 12-10-2018 IPR005631 Flavinator of succinate dehydrogenase YPK_3961 3264b72bde69d9d0f4b5fde73c88f8e8 295 SUPERFAMILY SSF161098 56 283 6.28E-50 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3961 3264b72bde69d9d0f4b5fde73c88f8e8 295 Gene3D G3DSA:1.10.3720.10 52 293 2.1E-57 T 12-10-2018 IPR035906 MetI-like superfamily YPK_3961 3264b72bde69d9d0f4b5fde73c88f8e8 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 293 1.5E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_0397 da25eaaac413c9273ff520ecd3d2a699 228 TIGRFAM TIGR03360 VI_minor_1: type VI secretion-associated protein, VC_A0118 family 41 228 1.4E-81 T 12-10-2018 IPR017738 Type VI secretion system-associated, VCA0118 YPK_0397 da25eaaac413c9273ff520ecd3d2a699 228 Pfam PF11319 Type VI secretion system VasI, EvfG, VC_A0118 43 228 4.3E-63 T 12-10-2018 IPR017738 Type VI secretion system-associated, VCA0118 YPK_2204 b0b528400952d478e0dba821f8e5ba23 212 Gene3D G3DSA:3.40.1400.10 1 212 1.7E-97 T 12-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YPK_2204 b0b528400952d478e0dba821f8e5ba23 212 SUPERFAMILY SSF89623 1 161 2.62E-35 T 12-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YPK_2204 b0b528400952d478e0dba821f8e5ba23 212 Pfam PF12408 Ribose-5-phosphate isomerase 164 210 1.5E-23 T 12-10-2018 IPR022133 Ribose-5-phosphate isomerase, C-terminal YPK_2204 b0b528400952d478e0dba821f8e5ba23 212 Pfam PF02502 Ribose/Galactose Isomerase 3 142 4.0E-29 T 12-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 YPK_1511 4d5d0d9a2dfb0f00a31a617809e842af 158 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 148 1.1E-45 T 12-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 YPK_1511 4d5d0d9a2dfb0f00a31a617809e842af 158 SUPERFAMILY SSF53254 1 138 4.5E-17 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_1511 4d5d0d9a2dfb0f00a31a617809e842af 158 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 1 67 1.9E-7 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 YPK_1511 4d5d0d9a2dfb0f00a31a617809e842af 158 Gene3D G3DSA:3.40.50.1240 1 156 4.6E-38 T 12-10-2018 IPR029033 Histidine phosphatase superfamily YPK_2298 c15ee6222f311dbddc7827e6c95c6966 172 Pfam PF10908 Protein of unknown function (DUF2778) 24 153 1.1E-37 T 12-10-2018 IPR021225 Protein of unknown function DUF2778 YPK_1121 e563a6f4787aff14989ee4e53d439fde 111 Gene3D G3DSA:3.90.1150.40 1 111 4.4E-56 T 12-10-2018 YPK_1121 e563a6f4787aff14989ee4e53d439fde 111 SUPERFAMILY SSF159894 1 111 1.33E-56 T 12-10-2018 YPK_1121 e563a6f4787aff14989ee4e53d439fde 111 Pfam PF09400 Protein of unknown function (DUF2002) 1 110 8.1E-55 T 12-10-2018 IPR018994 Protein of unknown function DUF2002 YPK_0189 83ee30bbbd231bfb7560ae16b8fd2e15 439 Pfam PF07157 DNA circularisation protein N-terminus 8 92 3.2E-29 T 12-10-2018 IPR009826 DNA circulation, N-terminal YPK_0189 83ee30bbbd231bfb7560ae16b8fd2e15 439 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 7 146 3.0E-42 T 12-10-2018 IPR009826 DNA circulation, N-terminal YPK_2482 440bf91b0ce8157f136ac3cd84f7178d 79 ProDom PD060536 YECJ YPO1738 1 79 3.0E-39 T 12-10-2018 IPR020262 Uncharacterised protein family YecJ YPK_2482 440bf91b0ce8157f136ac3cd84f7178d 79 Pfam PF10964 Protein of unknown function (DUF2766) 1 78 1.6E-48 T 12-10-2018 IPR020262 Uncharacterised protein family YecJ YPK_1840 abc8690b5e7b24ad29c7911636fe49a2 487 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 10 457 1.3E-154 T 12-10-2018 IPR003846 Uncharacterised protein family UPF0061 YPK_1840 abc8690b5e7b24ad29c7911636fe49a2 487 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 7 473 45.466 T 12-10-2018 IPR003846 Uncharacterised protein family UPF0061 YPK_1990 470fe9c1fc03b228de560b2b13a61b46 309 SUPERFAMILY SSF51395 48 276 2.27E-6 T 12-10-2018 YPK_4063 b6f5aae124cdecea55536015df89bb56 112 Pfam PF04219 Protein of unknown function, DUF 10 98 8.1E-40 T 12-10-2018 IPR007335 Protein of unknown function DUF413 YPK_3755 87933ac9b489c0a4c758a509db6351d7 328 SUPERFAMILY SSF103481 43 147 1.26E-14 T 12-10-2018 YPK_3755 87933ac9b489c0a4c758a509db6351d7 328 Pfam PF00892 EamA-like transporter family 161 273 2.3E-15 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_3755 87933ac9b489c0a4c758a509db6351d7 328 Pfam PF00892 EamA-like transporter family 9 144 1.4E-28 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_1110 e8a641339d0664218814c0a6eda52f0a 494 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 27 462 2.1E-85 T 12-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 YPK_1110 e8a641339d0664218814c0a6eda52f0a 494 Gene3D G3DSA:1.10.4160.10 11 476 3.5E-109 T 12-10-2018 IPR038271 Purine-cytosine permease superfamily YPK_2572 8d98002f432edc18fbc3e3c82915d5b0 280 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 278 6.5E-120 T 12-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 YPK_2572 8d98002f432edc18fbc3e3c82915d5b0 280 Gene3D G3DSA:3.40.50.1820 5 279 4.1E-92 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2572 8d98002f432edc18fbc3e3c82915d5b0 280 Pfam PF00756 Putative esterase 26 261 4.3E-68 T 12-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 YPK_2572 8d98002f432edc18fbc3e3c82915d5b0 280 SUPERFAMILY SSF53474 5 278 2.98E-87 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2163 96934f7f93e48777ddc83537f61b4092 187 Gene3D G3DSA:3.15.10.40 17 187 4.1E-71 T 12-10-2018 YPK_2163 96934f7f93e48777ddc83537f61b4092 187 Pfam PF07273 Protein of unknown function (DUF1439) 29 180 1.4E-58 T 12-10-2018 IPR010835 Protein of unknown function DUF1439 YPK_1547 12e4eff9b6fe0e7a3e7602564fb68ebe 95 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 85 3.8E-12 T 12-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 YPK_1547 12e4eff9b6fe0e7a3e7602564fb68ebe 95 Gene3D G3DSA:3.40.50.2300 1 90 1.1E-19 T 12-10-2018 YPK_1547 12e4eff9b6fe0e7a3e7602564fb68ebe 95 SUPERFAMILY SSF52794 1 89 7.06E-20 T 12-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 YPK_3553 27ce5ff7b17441e1c7186c620761f33c 163 Gene3D G3DSA:2.60.40.4150 34 163 2.8E-5 T 12-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily YPK_3553 27ce5ff7b17441e1c7186c620761f33c 163 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 10 133 3.0E-11 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YPK_3553 27ce5ff7b17441e1c7186c620761f33c 163 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 17 152 1.8E-19 T 12-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN YPK_2726 5913a79e5ec716de6bebdc61064e6c53 154 Pfam PF10767 Protein of unknown function (DUF2593) 11 148 2.1E-63 T 12-10-2018 IPR019703 Protein of unknown function DUF2593 YPK_1874 69dfedd9b7a878aa127c47313c149bfe 121 Pfam PF06945 Protein of unknown function (DUF1289) 54 99 9.3E-19 T 12-10-2018 IPR010710 Protein of unknown function DUF1289 YPK_3996 218afb2e0f04ed78f7d375fde17d162f 206 Pfam PF01810 LysE type translocator 14 202 3.1E-45 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YPK_3996 218afb2e0f04ed78f7d375fde17d162f 206 PIRSF PIRSF006324 1 205 2.0E-54 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YPK_2306 0e30493fb4c561e33b701f12083ce4c2 71 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 1.4E-18 T 12-10-2018 IPR007684 Zinc finger, Ogr/Delta-type YPK_1225 145338d2220242c35d8e02f5354b7cd0 382 Pfam PF09979 Uncharacterized protein conserved in bacteria (DUF2213) 4 174 1.9E-45 T 12-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 YPK_2638 834019fca096065c34e7383ae283cad2 550 Pfam PF02470 MlaD protein 162 220 4.0E-8 T 12-10-2018 IPR003399 Mce/MlaD YPK_2638 834019fca096065c34e7383ae283cad2 550 Pfam PF02470 MlaD protein 45 136 4.4E-11 T 12-10-2018 IPR003399 Mce/MlaD YPK_2638 834019fca096065c34e7383ae283cad2 550 Pfam PF02470 MlaD protein 292 393 8.1E-13 T 12-10-2018 IPR003399 Mce/MlaD YPK_3683 40c72c776434f96a939bc99fc4845be9 143 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 30.951 T 12-10-2018 IPR016716 Regulator of ribonuclease activity B YPK_3683 40c72c776434f96a939bc99fc4845be9 143 SUPERFAMILY SSF89946 3 123 5.62E-42 T 12-10-2018 IPR036701 RraB-like superfamily YPK_3683 40c72c776434f96a939bc99fc4845be9 143 Pfam PF06877 Regulator of ribonuclease activity B 12 113 1.6E-34 T 12-10-2018 IPR009671 Regulator of ribonuclease activity B domain YPK_3683 40c72c776434f96a939bc99fc4845be9 143 PIRSF PIRSF018193 1 143 2.2E-68 T 12-10-2018 IPR016716 Regulator of ribonuclease activity B YPK_3683 40c72c776434f96a939bc99fc4845be9 143 Gene3D G3DSA:3.30.70.970 1 125 2.3E-49 T 12-10-2018 IPR036701 RraB-like superfamily YPK_2149 c5d3361cbd7a508d3d480a6df30a353d 271 Gene3D G3DSA:3.20.20.410 1 258 2.7E-39 T 12-10-2018 IPR036520 UPF0759 superfamily YPK_2149 c5d3361cbd7a508d3d480a6df30a353d 271 SUPERFAMILY SSF117396 2 251 5.36E-66 T 12-10-2018 IPR036520 UPF0759 superfamily YPK_2149 c5d3361cbd7a508d3d480a6df30a353d 271 Pfam PF01904 Protein of unknown function DUF72 20 248 3.3E-51 T 12-10-2018 IPR002763 Protein of unknown function DUF72 YPK_3630 6a09099ceec1d8841fa6f9dba438155c 424 Gene3D G3DSA:3.40.1090.10 115 254 5.3E-6 T 12-10-2018 YPK_3630 6a09099ceec1d8841fa6f9dba438155c 424 Gene3D G3DSA:3.40.1090.10 14 114 3.2E-11 T 12-10-2018 YPK_3630 6a09099ceec1d8841fa6f9dba438155c 424 SUPERFAMILY SSF52151 22 274 3.66E-44 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YPK_3630 6a09099ceec1d8841fa6f9dba438155c 424 Pfam PF01734 Patatin-like phospholipase 27 195 1.5E-20 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 YPK_4010 c4e330644aeedcabc03a027930ffe023 234 Gene3D G3DSA:3.30.450.40 49 232 2.8E-34 T 12-10-2018 IPR029016 GAF-like domain superfamily YPK_4010 c4e330644aeedcabc03a027930ffe023 234 Pfam PF04340 Protein of unknown function, DUF484 13 231 1.9E-72 T 12-10-2018 IPR007435 Protein of unknown function DUF484 YPK_3671 a4ac4227c66700a58db4a78a266a13fe 273 Pfam PF10117 McrBC 5-methylcytosine restriction system component 4 228 1.6E-63 T 12-10-2018 IPR019292 5-methylcytosine restriction system component YPK_4167 cc9b4a814ef490d75b3b8bf884326677 350 Pfam PF10554 Ash protein family 228 301 7.7E-9 T 12-10-2018 IPR018880 Bacteriophage P4, Ash protein YPK_3560 33805c79a3c94a2d2b2c4cb41e13351f 327 Pfam PF06996 Type VI secretion, TssG 19 312 4.2E-59 T 12-10-2018 IPR010732 Type VI secretion, TssG-like YPK_3560 33805c79a3c94a2d2b2c4cb41e13351f 327 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 312 9.3E-53 T 12-10-2018 IPR010732 Type VI secretion, TssG-like YPK_0899 e9619a8b8a2edc9e688f79dc4cb92665 343 Pfam PF05125 Phage major capsid protein, P2 family 12 325 3.0E-113 T 12-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid YPK_0899 e9619a8b8a2edc9e688f79dc4cb92665 343 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 8 325 1.2E-104 T 12-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid YPK_0799 89c8f07ddb796ce97d617593f1496400 514 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 91 510 2.1E-170 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_0799 89c8f07ddb796ce97d617593f1496400 514 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 48 510 1.0E-203 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_2247 2712e598a6403615520bfb79efc95623 393 Pfam PF02687 FtsX-like permease family 298 386 1.4E-12 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 YPK_2247 2712e598a6403615520bfb79efc95623 393 Pfam PF12704 MacB-like periplasmic core domain 45 209 4.8E-12 T 12-10-2018 IPR025857 MacB-like periplasmic core domain YPK_3690 8b33b60a5500f156f54da87155155358 238 Pfam PF00005 ABC transporter 24 171 4.1E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 YPK_3690 8b33b60a5500f156f54da87155155358 238 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 YPK_3690 8b33b60a5500f156f54da87155155358 238 Gene3D G3DSA:3.40.50.300 1 237 2.9E-73 T 12-10-2018 YPK_3690 8b33b60a5500f156f54da87155155358 238 SUPERFAMILY SSF52540 3 232 1.33E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_3690 8b33b60a5500f156f54da87155155358 238 SMART SM00382 32 220 2.0E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain YPK_4055 d203dd38a73c0821720cf91b9807215e 153 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 2 151 2.1E-63 T 12-10-2018 IPR010351 Protein of unknown function DUF943 YPK_0716 bb297d45bc7197c4195f47d9ff9f842f 141 Gene3D G3DSA:1.20.58.300 4 132 6.7E-17 T 12-10-2018 YPK_0716 bb297d45bc7197c4195f47d9ff9f842f 141 Pfam PF05130 FlgN protein 7 130 4.3E-14 T 12-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 YPK_0716 bb297d45bc7197c4195f47d9ff9f842f 141 SUPERFAMILY SSF140566 7 130 2.48E-22 T 12-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 YPK_0670 c20acde2eb5dbe0365a3e3ef318bf705 220 Pfam PF09335 SNARE associated Golgi protein 48 172 1.7E-17 T 12-10-2018 IPR032816 SNARE associated Golgi protein YPK_0221 3fe5bb3c404aad71aff1ef2ef796f060 201 Pfam PF05137 Fimbrial assembly protein (PilN) 101 171 9.9E-14 T 12-10-2018 IPR007813 Fimbrial assembly PilN YPK_1852 2a789af220becaf3ce4ba4b8ede4db7e 140 SUPERFAMILY SSF82649 4 135 1.26E-45 T 12-10-2018 YPK_1852 2a789af220becaf3ce4ba4b8ede4db7e 140 Pfam PF02657 Fe-S metabolism associated domain 12 132 3.4E-43 T 12-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like YPK_1852 2a789af220becaf3ce4ba4b8ede4db7e 140 Gene3D G3DSA:3.90.1010.10 2 140 6.4E-51 T 12-10-2018 YPK_1852 2a789af220becaf3ce4ba4b8ede4db7e 140 Hamap MF_01832 Cysteine desulfuration protein SufE [sufE]. 1 138 43.434 T 12-10-2018 IPR023939 Cysteine desulfuration protein SufE GO:0006790|GO:0016226 YPK_3292 48949eddca3d42d2eb7132ad7ead68e5 101 Pfam PF16083 LydA holin phage, holin superfamily III 15 93 4.3E-22 T 12-10-2018 IPR032126 LydA-like holin YPK_1138 eefedb984ac08908c1f29b39d482e236 330 PIRSF PIRSF016502 7 330 4.3E-104 T 12-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 YPK_1138 eefedb984ac08908c1f29b39d482e236 330 TIGRFAM TIGR03441 urea_trans_yut: urea transporter 21 319 7.9E-117 T 12-10-2018 IPR017807 Urea transporter, bacteria GO:0015204|GO:0016021|GO:0071918 YPK_1138 eefedb984ac08908c1f29b39d482e236 330 Gene3D G3DSA:1.10.3430.10 8 330 5.0E-100 T 12-10-2018 IPR029020 Ammonium/urea transporter YPK_1138 eefedb984ac08908c1f29b39d482e236 330 Pfam PF03253 Urea transporter 24 320 4.5E-94 T 12-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 YPK_2177 231405e9c8d491ad986008ebef9115c2 133 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 126 1.1E-44 T 12-10-2018 IPR007360 Invasion gene expression up-regulator, SirB YPK_2177 231405e9c8d491ad986008ebef9115c2 133 PIRSF PIRSF005610 1 125 3.9E-29 T 12-10-2018 IPR007360 Invasion gene expression up-regulator, SirB YPK_3257 8302d6af3ff593e682b6e7f59ab412bb 156 Gene3D G3DSA:3.40.50.960 1 156 6.2E-64 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_3257 8302d6af3ff593e682b6e7f59ab412bb 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 1.1E-58 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_3257 8302d6af3ff593e682b6e7f59ab412bb 156 SUPERFAMILY SSF52121 3 154 3.53E-60 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_3257 8302d6af3ff593e682b6e7f59ab412bb 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.894 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_3257 8302d6af3ff593e682b6e7f59ab412bb 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 1.1E-55 T 12-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 YPK_2678 0e97b64c40203fc8f83f5c6b109acd34 224 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 53 115 9.6E-8 T 12-10-2018 IPR002654 Glycosyl transferase, family 25 YPK_3993 6746d5631241b574a53e769244c0412f 399 Pfam PF03272 Putative mucin or carbohydrate-binding module 230 341 1.4E-30 T 12-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain YPK_3993 6746d5631241b574a53e769244c0412f 399 Pfam PF03272 Putative mucin or carbohydrate-binding module 39 148 1.2E-11 T 12-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain YPK_2208 14078761379d08e5b0aea648ad1e3ef1 572 SUPERFAMILY SSF48452 86 275 1.9E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_3908 001168f87603c8f095272487c52064cf 215 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 28 195 1.3E-37 T 12-10-2018 IPR012842 Type III secretion system HrpE/YscL YPK_3908 001168f87603c8f095272487c52064cf 215 Pfam PF06188 HrpE/YscL/FliH and V-type ATPase subunit E 19 188 6.1E-7 T 12-10-2018 IPR009335 Type III secretion system HrpE /V-type ATP synthase subunit E YPK_0938 1d8bc39db60fd053ee329831d216cc94 168 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 138 2.5E-23 T 12-10-2018 IPR009678 Bacteriophage tail completion protein R YPK_0025 ce2328ad4d168fe5ea8d309547832428 239 Pfam PF11254 Protein of unknown function (DUF3053) 18 234 4.0E-94 T 12-10-2018 IPR021413 Protein of unknown function DUF3053 YPK_2854 249033f6ae72e31759b13ae9c0ad6e09 180 SUPERFAMILY SSF56925 38 180 2.04E-11 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_2854 249033f6ae72e31759b13ae9c0ad6e09 180 Pfam PF07437 YfaZ precursor 1 180 1.2E-91 T 12-10-2018 IPR009998 YfaZ YPK_1355 20da40b0884dc10af5828f3d0edb8286 118 Gene3D G3DSA:3.40.30.10 1 118 8.0E-52 T 12-10-2018 YPK_1355 20da40b0884dc10af5828f3d0edb8286 118 Pfam PF03960 ArsC family 7 116 6.8E-23 T 12-10-2018 IPR006660 Arsenate reductase-like YPK_1355 20da40b0884dc10af5828f3d0edb8286 118 SUPERFAMILY SSF52833 3 117 4.48E-36 T 12-10-2018 IPR036249 Thioredoxin-like superfamily YPK_1355 20da40b0884dc10af5828f3d0edb8286 118 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 117 8.7E-48 T 12-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 YPK_0936 1eb5214186722c514b327c4dd0a79dae 388 Pfam PF10758 Protein of unknown function (DUF2586) 3 380 1.1E-157 T 12-10-2018 IPR019694 Bacteriophage HP1, Orf23 YPK_1217 d7ad40993632acba82af6d8163848b03 110 Pfam PF05106 Phage holin family (Lysis protein S) 5 101 2.2E-28 T 12-10-2018 IPR006481 Bacteriophage lambda, GpS, holin YPK_1217 d7ad40993632acba82af6d8163848b03 110 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 2 104 2.4E-27 T 12-10-2018 IPR006481 Bacteriophage lambda, GpS, holin YPK_0317 3180ccf5749b8596112d53d7f35727af 373 SUPERFAMILY SSF102405 76 281 2.14E-41 T 12-10-2018 YPK_0317 3180ccf5749b8596112d53d7f35727af 373 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 64 282 1.3E-82 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 YPK_0317 3180ccf5749b8596112d53d7f35727af 373 Pfam PF02481 DNA recombination-mediator protein A 68 274 4.9E-76 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 YPK_0317 3180ccf5749b8596112d53d7f35727af 373 Gene3D G3DSA:3.40.50.450 2 285 5.0E-89 T 12-10-2018 YPK_3857 4ac842e583554f79fd0efd627fb41598 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 64 3.0E-25 T 12-10-2018 IPR014318 Phage shock protein, PspG YPK_3857 4ac842e583554f79fd0efd627fb41598 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 65 7.7E-29 T 12-10-2018 IPR014318 Phage shock protein, PspG YPK_4040 277a0af37b7a964afd89a9cd49b5c984 98 SUPERFAMILY SSF54534 8 95 2.29E-30 T 12-10-2018 YPK_4040 277a0af37b7a964afd89a9cd49b5c984 98 Pfam PF13616 PPIC-type PPIASE domain 16 95 9.5E-25 T 12-10-2018 YPK_4040 277a0af37b7a964afd89a9cd49b5c984 98 Gene3D G3DSA:3.10.50.40 7 98 3.2E-37 T 12-10-2018 YPK_2169 1a849034f79d613a14bdc53e708d586b 288 Gene3D G3DSA:1.10.3720.10 48 279 1.3E-36 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2169 1a849034f79d613a14bdc53e708d586b 288 SUPERFAMILY SSF161098 50 272 2.75E-41 T 12-10-2018 IPR035906 MetI-like superfamily YPK_2169 1a849034f79d613a14bdc53e708d586b 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 282 8.8E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_2427 d0d9e829897fb299a527342a81fd3e31 100 SUPERFAMILY SSF101498 3 92 4.97E-13 T 12-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily YPK_2427 d0d9e829897fb299a527342a81fd3e31 100 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 3 93 7.4E-19 T 12-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 YPK_2427 d0d9e829897fb299a527342a81fd3e31 100 Pfam PF04316 Anti-sigma-28 factor, FlgM 43 91 3.0E-10 T 12-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal YPK_0957 8ff71168119e822109b3622b976ebdba 255 Pfam PF11340 Protein of unknown function (DUF3142) 97 188 6.6E-15 T 12-10-2018 IPR021488 Protein of unknown function DUF3142 YPK_3847 6762615a2813540dff1ca14d94ac42f7 274 Hamap MF_00770 Rhamnulose-1-phosphate aldolase [rhaD]. 1 272 58.712 T 12-10-2018 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19 YPK_3847 6762615a2813540dff1ca14d94ac42f7 274 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 12 238 8.9E-39 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_3847 6762615a2813540dff1ca14d94ac42f7 274 TIGRFAM TIGR02624 rhamnu_1P_ald: rhamnulose-1-phosphate aldolase 1 272 2.7E-143 T 12-10-2018 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19 YPK_3847 6762615a2813540dff1ca14d94ac42f7 274 SMART SM01007 11 239 1.7E-34 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal YPK_3847 6762615a2813540dff1ca14d94ac42f7 274 SUPERFAMILY SSF53639 1 270 5.69E-75 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_3847 6762615a2813540dff1ca14d94ac42f7 274 Gene3D G3DSA:3.40.225.10 1 274 3.8E-88 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily YPK_2332 9135ee5e842a9301269d8a351ef06003 67 Pfam PF05489 Phage Tail Protein X 1 59 8.6E-29 T 12-10-2018 IPR008861 Phage Tail Protein X-like YPK_2332 9135ee5e842a9301269d8a351ef06003 67 Gene3D G3DSA:3.10.350.10 1 67 8.0E-31 T 12-10-2018 IPR036779 LysM domain superfamily YPK_3246 a7b80564342486ca4515e95bd5df8a47 454 Pfam PF07690 Major Facilitator Superfamily 20 346 1.1E-37 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 YPK_3246 a7b80564342486ca4515e95bd5df8a47 454 SUPERFAMILY SSF103473 1 390 4.05E-62 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_3246 a7b80564342486ca4515e95bd5df8a47 454 Gene3D G3DSA:3.30.70.100 390 454 1.4E-27 T 12-10-2018 YPK_3246 a7b80564342486ca4515e95bd5df8a47 454 Gene3D G3DSA:1.20.1250.20 3 389 3.1E-100 T 12-10-2018 YPK_2167 effb0304a693a39126dee1df96b7e26f 276 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 18 218 7.4E-24 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 YPK_2167 effb0304a693a39126dee1df96b7e26f 276 Gene3D G3DSA:3.20.20.190 8 245 3.5E-46 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_2167 effb0304a693a39126dee1df96b7e26f 276 SUPERFAMILY SSF51695 15 266 9.94E-50 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 YPK_2811 b60b5cadc21f07235611b6920651eccf 378 Pfam PF04865 Baseplate J-like protein 66 340 1.3E-84 T 12-10-2018 IPR006949 Baseplate protein J-like YPK_2589 b8f364d7b2e2aea7eb61f08f1ab13c84 352 Pfam PF15607 Bacterial toxin 44 196 303 1.8E-26 T 12-10-2018 IPR028946 Bacterial toxin 44 YPK_2589 b8f364d7b2e2aea7eb61f08f1ab13c84 352 Pfam PF05488 PAAR motif 9 64 2.2E-7 T 12-10-2018 IPR008727 PAAR motif YPK_0488 98f56058f10323ad8d040ccc2fbae2c6 93 SUPERFAMILY SSF52038 1 87 1.31E-28 T 12-10-2018 IPR035905 Barstar-like superfamily YPK_0488 98f56058f10323ad8d040ccc2fbae2c6 93 Pfam PF01337 Barstar (barnase inhibitor) 6 80 3.8E-11 T 12-10-2018 IPR000468 Barstar (barnase inhibitor) YPK_0488 98f56058f10323ad8d040ccc2fbae2c6 93 Gene3D G3DSA:3.30.370.10 1 89 3.3E-35 T 12-10-2018 IPR035905 Barstar-like superfamily YPK_0942 be834a324cae4001573350314435034f 311 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 9 291 2.4E-43 T 12-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 YPK_0182 8b3090709412551b522af3709e3b870a 145 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 26 145 4.1E-18 T 12-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_3944 5bc2cb5e117a066d3e13dacca64c97f7 216 Pfam PF02036 SCP-2 sterol transfer family 34 128 1.0E-19 T 12-10-2018 IPR003033 SCP2 sterol-binding domain YPK_3944 5bc2cb5e117a066d3e13dacca64c97f7 216 SUPERFAMILY SSF55718 37 133 2.67E-7 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily YPK_0329 41e9996442fac601608aedc0cb2bf621 183 SUPERFAMILY SSF55729 2 171 2.23E-22 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase YPK_0329 41e9996442fac601608aedc0cb2bf621 183 Pfam PF13673 Acetyltransferase (GNAT) domain 49 149 3.2E-11 T 12-10-2018 IPR000182 GNAT domain YPK_0329 41e9996442fac601608aedc0cb2bf621 183 Gene3D G3DSA:3.40.630.30 1 173 1.2E-39 T 12-10-2018 YPK_0070 43cb7935d2986aeb08063727aa03783a 319 SUPERFAMILY SSF81345 5 313 1.57E-67 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_0070 43cb7935d2986aeb08063727aa03783a 319 Pfam PF01032 FecCD transport family 13 313 4.1E-65 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_0070 43cb7935d2986aeb08063727aa03783a 319 Gene3D G3DSA:1.10.3470.10 1 318 8.9E-65 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_0700 5e82620e2864d28ddf11cb173c4f0b99 189 Pfam PF11153 Protein of unknown function (DUF2931) 9 188 1.7E-38 T 12-10-2018 IPR021326 Protein of unknown function DUF2931 YPK_0932 486180db0f2ff79e9a8da1a3e30a0afc 394 Pfam PF04865 Baseplate J-like protein 82 328 5.5E-31 T 12-10-2018 IPR006949 Baseplate protein J-like YPK_1346 98554625f76934e45e01a0a6f7fb5df0 570 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 302 562 5.5E-74 T 12-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 YPK_1346 98554625f76934e45e01a0a6f7fb5df0 570 SUPERFAMILY SSF161098 285 553 1.7E-38 T 12-10-2018 IPR035906 MetI-like superfamily YPK_1346 98554625f76934e45e01a0a6f7fb5df0 570 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 338 566 2.9E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 YPK_1346 98554625f76934e45e01a0a6f7fb5df0 570 Gene3D G3DSA:1.10.3720.10 313 565 3.9E-32 T 12-10-2018 IPR035906 MetI-like superfamily YPK_0849 3c4d95f7a25c18970ebc2a034b373e27 250 Gene3D G3DSA:3.30.2010.10 59 149 9.6E-9 T 12-10-2018 YPK_0849 3c4d95f7a25c18970ebc2a034b373e27 250 Pfam PF01435 Peptidase family M48 79 245 1.0E-24 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 YPK_4097 68e7a3c221b6fdb87eaec8ec265331f5 151 Pfam PF05360 yiaA/B two helix domain 75 127 2.0E-22 T 12-10-2018 IPR008024 YiaAB two helix YPK_4097 68e7a3c221b6fdb87eaec8ec265331f5 151 Pfam PF05360 yiaA/B two helix domain 12 64 7.1E-21 T 12-10-2018 IPR008024 YiaAB two helix YPK_0521 8f9f43d89fac8ee1f99084e7f9ea47f5 134 Pfam PF06295 Protein of unknown function (DUF1043) 6 127 7.5E-50 T 12-10-2018 IPR009386 Protein of unknown function DUF1043 YPK_0521 8f9f43d89fac8ee1f99084e7f9ea47f5 134 PIRSF PIRSF006318 1 134 1.0E-51 T 12-10-2018 IPR009386 Protein of unknown function DUF1043 YPK_1222 1030661769b6b87c5e12f4bf108776bb 534 Gene3D G3DSA:3.30.420.240 293 525 1.1E-75 T 12-10-2018 YPK_1222 1030661769b6b87c5e12f4bf108776bb 534 Gene3D G3DSA:3.40.50.300 16 246 4.1E-29 T 12-10-2018 YPK_3256 1f1db598d4494f6f2a39094d59d20aa0 138 Pfam PF01029 NusB family 7 131 4.9E-37 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 YPK_3256 1f1db598d4494f6f2a39094d59d20aa0 138 Gene3D G3DSA:1.10.940.10 1 138 2.6E-54 T 12-10-2018 IPR035926 NusB-like superfamily YPK_3256 1f1db598d4494f6f2a39094d59d20aa0 138 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 132 4.7E-47 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 YPK_3256 1f1db598d4494f6f2a39094d59d20aa0 138 SUPERFAMILY SSF48013 3 135 2.49E-44 T 12-10-2018 IPR035926 NusB-like superfamily YPK_3256 1f1db598d4494f6f2a39094d59d20aa0 138 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 4 135 24.287 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 YPK_3680 5d15f456f2bcae339189ac616dad4869 149 Gene3D G3DSA:3.40.50.10110 1 146 2.7E-51 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily YPK_3680 5d15f456f2bcae339189ac616dad4869 149 SUPERFAMILY SSF102400 1 143 9.55E-48 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily YPK_3680 5d15f456f2bcae339189ac616dad4869 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 142 3.9E-39 T 12-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 YPK_3244 d6def7e7622e1b6429d225298cf11e17 110 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 13 108 1.0E-39 T 12-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 YPK_3244 d6def7e7622e1b6429d225298cf11e17 110 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 20 93 1.0E-18 T 12-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 YPK_3219 07cf81c6a811830fe7f94b0274282f8e 430 Gene3D G3DSA:1.10.3430.10 25 409 1.3E-145 T 12-10-2018 IPR029020 Ammonium/urea transporter YPK_3219 07cf81c6a811830fe7f94b0274282f8e 430 ProSitePatterns PS01219 Ammonium transporters signature. 184 209 - T 12-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 YPK_3219 07cf81c6a811830fe7f94b0274282f8e 430 TIGRFAM TIGR00836 amt: ammonium transporter 33 428 1.5E-136 T 12-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 YPK_3219 07cf81c6a811830fe7f94b0274282f8e 430 Pfam PF00909 Ammonium Transporter Family 35 428 3.8E-126 T 12-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 YPK_3219 07cf81c6a811830fe7f94b0274282f8e 430 SUPERFAMILY SSF111352 29 409 1.28E-127 T 12-10-2018 YPK_4117 4a04bf71c3c4e9d8b3d37da8479b2aa7 211 Pfam PF07305 Protein of unknown function (DUF1454) 18 210 1.0E-83 T 12-10-2018 IPR009918 Protein of unknown function DUF1454 YPK_0960 d2bbed57a9e48ac14a7f3643b6cf05e9 106 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 95 1.9E-34 T 12-10-2018 IPR024476 Protein of unknown function DUF3861 YPK_0960 d2bbed57a9e48ac14a7f3643b6cf05e9 106 Gene3D G3DSA:1.10.225.20 2 96 1.1E-29 T 12-10-2018 YPK_3122 9de05d3a5098e52afa6c4f8c53b8c05d 477 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 187 350 1.3E-20 T 12-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain YPK_3122 9de05d3a5098e52afa6c4f8c53b8c05d 477 Pfam PF17482 Phage tail sheath C-terminal domain 359 471 6.4E-9 T 12-10-2018 IPR020287 Tail sheath protein, C-terminal domain YPK_2430 9459429422285cda8e1bf1fe0984a8c1 140 Pfam PF06366 Flagellar protein FlhE 35 140 1.6E-36 T 12-10-2018 IPR009420 Flagellar protein FlhE YPK_0595 74b13e0a76e45a95c466bdf67d571ade 633 Pfam PF04632 Fusaric acid resistance protein family 261 524 5.7E-25 T 12-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 YPK_3696 a5e7380fd4e5d5ae3a61ca5091cfc76d 392 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 351 3.9E-155 T 12-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 YPK_3696 a5e7380fd4e5d5ae3a61ca5091cfc76d 392 PIRSF PIRSF007313 1 360 1.1E-162 T 12-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 YPK_3911 32ccc5c3faeb60fe4802a0c4d9cde4a0 83 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 45 83 2.2E-22 T 12-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 YPK_3948 b06aa86482f06d844e1e69a1b69df8d1 603 Pfam PF02554 Carbon starvation protein CstA 4 367 4.6E-138 T 12-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 YPK_3948 b06aa86482f06d844e1e69a1b69df8d1 603 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 417 538 1.5E-27 T 12-10-2018 IPR025299 CstA, C-terminal domain YPK_2582 315268702ffb17c5da219482c3441258 207 Pfam PF16809 NleF caspase inhibitor 35 195 4.3E-62 T 12-10-2018 IPR031829 Effector protein NleF YPK_2582 315268702ffb17c5da219482c3441258 207 Gene3D G3DSA:1.20.1260.90 34 200 1.9E-7 T 12-10-2018 IPR038334 NleF superfamily YPK_0736 90b8eb6d56a89d321557d1835cef41b3 155 Pfam PF05433 Glycine zipper 2TM domain 62 103 6.7E-9 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 YPK_2005 ecf740b9d862cdfd5fcd28b626a3198c 147 Pfam PF10754 Protein of unknown function (DUF2569) 7 145 3.5E-45 T 12-10-2018 IPR019690 Protein of unknown function DUF2569 YPK_2475 1d5021f260a783fd26ca8ae6972b72e1 38 Pfam PF10736 Protein of unknown function (DUF2627) 1 38 3.9E-29 T 12-10-2018 IPR019672 Protein of unknown function DUF2627 YPK_0400 145714ad61d75a18520b68aaca3e305f 435 Pfam PF06812 ImpA, N-terminal, type VI secretion system 12 113 9.0E-23 T 12-10-2018 IPR010657 ImpA, N-terminal YPK_0400 145714ad61d75a18520b68aaca3e305f 435 Pfam PF12486 Type VI secretion system, EvfB, or VasL 282 428 8.0E-55 T 12-10-2018 IPR021069 ImpA, C-terminal YPK_3878 0a0ed9bc185497597a2986a620897224 353 Pfam PF15632 ATP-grasp in the biosynthetic pathway with Ter operon 4 340 3.6E-109 T 12-10-2018 IPR011226 ATP-grasp family YPK_3878 0a0ed9bc185497597a2986a620897224 353 SUPERFAMILY SSF56059 109 314 7.44E-20 T 12-10-2018 YPK_3878 0a0ed9bc185497597a2986a620897224 353 PIRSF PIRSF029120 1 353 5.9E-175 T 12-10-2018 IPR011226 ATP-grasp family YPK_3878 0a0ed9bc185497597a2986a620897224 353 Gene3D G3DSA:3.30.470.20 109 350 1.7E-11 T 12-10-2018 YPK_2881 5534780c015cc6efd68a642d6e5890b0 113 SMART SM00507 15 70 3.0E-4 T 12-10-2018 IPR003615 HNH nuclease YPK_2881 5534780c015cc6efd68a642d6e5890b0 113 Pfam PF01844 HNH endonuclease 27 75 8.4E-10 T 12-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 YPK_0382 570791ced18091373e28ccb4eef0500d 303 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 74 206 3.7E-53 T 12-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 YPK_2336 b687053842137d2bb59b9dbfc9beec8d 155 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 128 3.9E-48 T 12-10-2018 IPR009678 Bacteriophage tail completion protein R YPK_3723 15fd16183de4dc73b238fb8e97643066 122 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 24 113 3.6E-20 T 12-10-2018 IPR009241 Toxin HigB-like YPK_1233 e805dcb081b97d6dcb0c355498de5ccb 504 Pfam PF11863 Protein of unknown function (DUF3383) 5 500 4.3E-83 T 12-10-2018 IPR021808 Protein of unknown function DUF3383 YPK_1440 bfae9dcde066e749afbcdd2edf8ae569 137 Pfam PF10697 Protein of unknown function (DUF2502) 39 126 7.3E-36 T 12-10-2018 IPR019638 Protein of unknown function DUF2502 YPK_3070 b101b2def2e9b53f30ff41037c3520ab 735 Pfam PF09925 Predicted membrane protein (DUF2157) 29 164 9.9E-28 T 12-10-2018 IPR018677 Domain of unknown function DUF2157 YPK_3070 b101b2def2e9b53f30ff41037c3520ab 735 Pfam PF14351 Domain of unknown function (DUF4401) 394 724 4.7E-55 T 12-10-2018 IPR025513 Domain of unknown function DUF4401 YPK_3554 52632b49181d264d90dc896f52cbe840 121 Pfam PF13665 Domain of unknown function (DUF4150) 18 106 2.3E-12 T 12-10-2018 IPR025425 Domain of unknown function DUF4150 YPK_0010 cd8bbd57fdbe16fa4bc10fcbe1aa5903 112 Pfam PF07119 Protein of unknown function (DUF1375) 13 76 2.0E-15 T 12-10-2018 IPR010780 Protein of unknown function DUF1375 YPK_3147 0d13fd7be2cf9f98a92d9e42255c1d8b 1090 SUPERFAMILY SSF48439 434 514 1.26E-6 T 12-10-2018 YPK_3147 0d13fd7be2cf9f98a92d9e42255c1d8b 1090 Gene3D G3DSA:1.25.40.10 365 552 7.2E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 YPK_0651 2b1431fb976a9a4848e32fe3722caddd 386 SUPERFAMILY SSF56059 1 383 7.06E-93 T 12-10-2018 YPK_0651 2b1431fb976a9a4848e32fe3722caddd 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 1.1E-163 T 12-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain YPK_0651 2b1431fb976a9a4848e32fe3722caddd 386 SUPERFAMILY SSF52440 174 279 1.06E-41 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily YPK_0651 2b1431fb976a9a4848e32fe3722caddd 386 Gene3D G3DSA:3.30.1490.330 263 343 2.4E-28 T 12-10-2018 YPK_0814 ba134c215af72f4b44cf0d9c45ea2313 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 316 4.2E-45 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_2708 d6a0a01660040c52746bb85e6203b804 191 Pfam PF12883 Protein of unknown function (DUF3828) 41 174 2.0E-13 T 12-10-2018 IPR024289 Domain of unknown function DUF3828 YPK_2755 1357e66646a8d61bec2c17d2d1dd6937 362 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 21 358 9.7E-127 T 12-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 YPK_2755 1357e66646a8d61bec2c17d2d1dd6937 362 Pfam PF03601 Conserved hypothetical protein 698 23 338 1.4E-107 T 12-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 YPK_1929 2f0c695e5a561c20e25cc11da7f76b2a 96 ProDom PD580032 SHOCK ACID PRECURSOR SIGNAL 3D-STRUCTURE RESPONSE STRESS SECRETED 1 95 2.0E-16 T 12-10-2018 YPK_2191 905fc767b5c87196d5ccb38e106c0cdc 363 Pfam PF01738 Dienelactone hydrolase family 76 191 1.6E-5 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 YPK_2191 905fc767b5c87196d5ccb38e106c0cdc 363 Gene3D G3DSA:3.40.50.1820 70 345 4.7E-85 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2191 905fc767b5c87196d5ccb38e106c0cdc 363 Gene3D G3DSA:1.10.10.800 200 289 4.7E-85 T 12-10-2018 YPK_2191 905fc767b5c87196d5ccb38e106c0cdc 363 SUPERFAMILY SSF53474 58 353 2.65E-41 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold YPK_2879 9694743e27b000b19a149e291a13345c 82 Pfam PF04226 Transglycosylase associated protein 33 81 1.9E-15 T 12-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 YPK_2020 824ebe1eafc90d1c7d3606d3eb2a56f8 82 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 4 77 1.8E-26 T 12-10-2018 IPR018680 Protein of unknown function DUF2164 YPK_3595 59f1180573866770b8d27befde75fc61 203 Pfam PF01184 GPR1/FUN34/yaaH family 4 180 3.4E-44 T 12-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 YPK_3099 78d2af32efe4ef0cbffb5a4e6eee864d 250 Pfam PF05100 Phage minor tail protein L 28 247 1.5E-87 T 12-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail YPK_3099 78d2af32efe4ef0cbffb5a4e6eee864d 250 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 6 247 3.0E-67 T 12-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail YPK_0822 51cd6ebe7236f4bb3339fc0684b53e87 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 1.6E-43 T 12-10-2018 IPR007416 Protein of unknown function DUF469 YPK_3211 0ae7c15400a099c15f6340fee359fa55 47 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 17 41 0.002 T 12-10-2018 YPK_3211 0ae7c15400a099c15f6340fee359fa55 47 SUPERFAMILY SSF57840 8 41 7.59E-14 T 12-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3211 0ae7c15400a099c15f6340fee359fa55 47 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 17.15 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3211 0ae7c15400a099c15f6340fee359fa55 47 Pfam PF00444 Ribosomal protein L36 1 41 2.6E-17 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3211 0ae7c15400a099c15f6340fee359fa55 47 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 1.5E-9 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_3211 0ae7c15400a099c15f6340fee359fa55 47 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 YPK_0631 1fd3e3ccc4865cec7bbe8d1e1d7fdbaa 102 Pfam PF13031 Protein of unknown function (DUF3892) 10 100 5.0E-13 T 12-10-2018 IPR024997 Protein of unknown function DUF3892 YPK_0031 b7437e96ef772d3203b84ebae9b6879c 158 Pfam PF10517 Electron transfer DM13 62 157 8.2E-22 T 12-10-2018 IPR019545 DM13 domain YPK_0915 103215a3ac99c063818e025c7f3f498e 142 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 9 140 4.8E-25 T 12-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_0069 99d8b903e4d63e70a3800534a3fb3e2f 335 SUPERFAMILY SSF81345 26 331 9.02E-44 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_0069 99d8b903e4d63e70a3800534a3fb3e2f 335 Gene3D G3DSA:1.10.3470.10 18 334 6.3E-43 T 12-10-2018 IPR037294 ABC transporter, BtuC-like YPK_0069 99d8b903e4d63e70a3800534a3fb3e2f 335 Pfam PF01032 FecCD transport family 49 331 1.0E-42 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 YPK_3112 ee5b419105f8d892423f657c64797003 198 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 12 196 4.7E-39 T 12-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 YPK_1776 db2f492b49e7d7d893ba47f7a0225838 185 Pfam PF05229 Spore Coat Protein U domain 34 182 1.5E-28 T 12-10-2018 IPR007893 Spore coat protein U YPK_1776 db2f492b49e7d7d893ba47f7a0225838 185 SMART SM00972 122 182 5.1E-15 T 12-10-2018 IPR007893 Spore coat protein U YPK_2942 79e6fc2569b65c3f3fdf817041b3441b 272 Pfam PF02517 CAAX protease self-immunity 172 259 1.2E-19 T 12-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 YPK_0073 7fd0fa2691bb91421a10dac49fb9b7a5 309 Pfam PF00892 EamA-like transporter family 162 293 2.9E-9 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 YPK_0601 ba7b5ab099ad441dfb596f53285ecbe9 145 Gene3D G3DSA:3.30.530.20 4 144 1.2E-31 T 12-10-2018 IPR023393 START-like domain superfamily YPK_0601 ba7b5ab099ad441dfb596f53285ecbe9 145 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 2 115 1.6E-13 T 12-10-2018 IPR019587 Polyketide cyclase/dehydrase YPK_0601 ba7b5ab099ad441dfb596f53285ecbe9 145 SUPERFAMILY SSF55961 2 141 4.4E-24 T 12-10-2018 YPK_3123 901d9c382e087872d57c7c4c1baf7c19 114 Gene3D G3DSA:2.40.10.180 7 114 2.6E-5 T 12-10-2018 YPK_2198 d9cf048577e9e9a84617e95e6190c2ec 310 SUPERFAMILY SSF51182 40 209 2.71E-5 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_0547 6615b680e0a1bfd4a8d08bebaa96faec 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 5.0E-32 T 12-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 YPK_0217 ec3b77bfeb4d22c4e989fbb3ca1fe2af 81 SUPERFAMILY SSF47413 9 74 1.86E-24 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 YPK_0217 ec3b77bfeb4d22c4e989fbb3ca1fe2af 81 Pfam PF13693 Winged helix-turn-helix DNA-binding 11 79 6.4E-28 T 12-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain YPK_0217 ec3b77bfeb4d22c4e989fbb3ca1fe2af 81 Gene3D G3DSA:1.10.260.40 5 75 1.5E-29 T 12-10-2018 YPK_3519 92d8af04ecb095805205de0df467b41a 400 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 31 386 1.7E-134 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3519 92d8af04ecb095805205de0df467b41a 400 Pfam PF01098 Cell cycle protein 33 387 4.0E-122 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3519 92d8af04ecb095805205de0df467b41a 400 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 29 396 42.061 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3519 92d8af04ecb095805205de0df467b41a 400 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 345 369 - T 12-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 YPK_3299 08e21b975028b076c27bac502be99563 359 Gene3D G3DSA:3.10.520.20 40 359 3.3E-115 T 12-10-2018 YPK_3299 08e21b975028b076c27bac502be99563 359 PIRSF PIRSF006268 23 356 2.7E-92 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 YPK_3299 08e21b975028b076c27bac502be99563 359 SUPERFAMILY SSF143631 44 355 2.25E-103 T 12-10-2018 IPR003374 ApbE-like superfamily YPK_3299 08e21b975028b076c27bac502be99563 359 Pfam PF02424 ApbE family 52 328 5.2E-85 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 YPK_3401 548ccbbc27021b1a8557380f9d8b1b83 346 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 316 9.6E-24 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1392 f3e20469bb3c9a9ab266aca5deed9ecb 152 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 32.028 T 12-10-2018 IPR003791 Protein of unknown function UPF0178 YPK_1392 f3e20469bb3c9a9ab266aca5deed9ecb 152 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 3.7E-51 T 12-10-2018 IPR003791 Protein of unknown function UPF0178 YPK_0128 165e4617c210d8bb9b33c48c4bf54861 227 Gene3D G3DSA:2.60.120.10 2 227 2.9E-89 T 12-10-2018 IPR014710 RmlC-like jelly roll fold YPK_0128 165e4617c210d8bb9b33c48c4bf54861 227 Pfam PF07385 D-lyxose isomerase 1 223 4.2E-100 T 12-10-2018 IPR010864 D-lyxose isomerase KEGG: 00040+5.3.1.15 YPK_2481 828d02213c49c16c0c8bd65bdcbe362d 77 Pfam PF13996 YobH-like protein 3 70 8.0E-35 T 12-10-2018 IPR025611 YobH-like protein YPK_2094 ee2f1086fbf00f7869866626602c637e 124 Pfam PF07023 Protein of unknown function (DUF1315) 39 117 3.0E-26 T 12-10-2018 IPR009749 Protein of unknown function DUF1315 YPK_3580 1865ca738883d85e3cdae431fcb5e083 266 Pfam PF06738 Putative threonine/serine exporter 21 260 3.5E-68 T 12-10-2018 IPR010619 Putative threonine/serine exporter YPK_0059 4ca977a4fefbc493f6b002f8fdd5c2d0 394 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 384 5.5E-48 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_1160 ad8ea47039d46715114b18f06d1a3a12 68 Pfam PF10725 Protein of unknown function (DUF2517) 4 63 2.9E-35 T 12-10-2018 IPR019663 Uncharacterised protein YbfA YPK_0682 fe145ebbf225c6b66f32f3da9b92a9e2 428 Gene3D G3DSA:3.40.50.300 171 425 4.8E-72 T 12-10-2018 YPK_0682 fe145ebbf225c6b66f32f3da9b92a9e2 428 Pfam PF00437 Type II/IV secretion system protein 74 349 2.8E-80 T 12-10-2018 IPR001482 Type II/IV secretion system protein YPK_0682 fe145ebbf225c6b66f32f3da9b92a9e2 428 SUPERFAMILY SSF52540 55 358 2.8E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase YPK_0682 fe145ebbf225c6b66f32f3da9b92a9e2 428 Gene3D G3DSA:3.30.450.380 5 168 6.5E-37 T 12-10-2018 YPK_3983 b3d46fdd4345f7111df1a882dc327792 106 Pfam PF08850 Domain of unknown function (DUF1820) 7 99 1.2E-40 T 12-10-2018 IPR014949 Protein of unknown function DUF1820 YPK_3983 b3d46fdd4345f7111df1a882dc327792 106 PIRSF PIRSF028538 1 106 9.4E-44 T 12-10-2018 IPR014949 Protein of unknown function DUF1820 YPK_3562 bcab395e1dd4e9cd70c4ba8ee20d2b52 147 Pfam PF04965 Gene 25-like lysozyme 25 121 1.9E-12 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD YPK_2810 dcb90467ca74bc8f9e1ce6ce345d57c5 200 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 12 197 4.9E-40 T 12-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 YPK_2478 9c7020ff8bfe6ef74d0c214c9179a29f 81 Pfam PF13269 Protein of unknown function (DUF4060) 3 75 2.7E-39 T 12-10-2018 IPR025135 Protein of unknown function DUF4060 YPK_2188 d70a7b3334728de4098396dc92da17cc 280 Pfam PF13316 Protein of unknown function (DUF4087) 26 120 5.9E-39 T 12-10-2018 IPR025145 Protein of unknown function DUF4087 YPK_0677 b642eeefae35c2f0c3146d2ab8391e18 190 Pfam PF16964 Putative tight adherence pilin protein F 8 190 1.9E-40 T 12-10-2018 IPR031582 Putative tight adherence pilin protein F YPK_0983 951c2615ac123659127e80fe6f15c215 495 PIRSF PIRSF014753 31 469 3.7E-92 T 12-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 YPK_0983 951c2615ac123659127e80fe6f15c215 495 PIRSF PIRSF014753 430 495 170.0 T 12-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 YPK_0983 951c2615ac123659127e80fe6f15c215 495 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 63 408 6.2E-86 T 12-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 YPK_1676 26af517db3bed4f194511418d6f97cb2 95 Gene3D G3DSA:3.30.70.100 1 95 2.9E-29 T 12-10-2018 YPK_1676 26af517db3bed4f194511418d6f97cb2 95 SUPERFAMILY SSF54909 3 89 5.78E-28 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel YPK_1676 26af517db3bed4f194511418d6f97cb2 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 77 1.9E-17 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain YPK_2331 0e0a5a0c8db67de2a12188776d34f58d 163 Pfam PF05926 Phage head completion protein (GPL) 25 163 6.9E-48 T 12-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 YPK_2480 a9b23eaae00747b917f7661147217d6c 91 Pfam PF13974 YebO-like protein 16 91 3.4E-29 T 12-10-2018 IPR025594 YebO-like protein YPK_1916 d1f6d5fc4d2ddc3ecca91edd8346e493 107 Pfam PF03891 Domain of unknown function (DUF333) 56 103 1.5E-20 T 12-10-2018 IPR005590 Protein of unknown function DUF333 YPK_3511 efcfaea5a6bbb755ad34cb82906497c3 174 Pfam PF05258 Protein of unknown function (DUF721) 26 98 1.2E-13 T 12-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 YPK_0514 5b93e21ef84f78f4a542f23940c093d2 185 Pfam PF02470 MlaD protein 39 116 2.5E-18 T 12-10-2018 IPR003399 Mce/MlaD YPK_0514 5b93e21ef84f78f4a542f23940c093d2 185 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 152 3.4E-54 T 12-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 YPK_2586 0549a8dffc41af53bcac91dd253ca0ca 361 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 21 319 1.4E-69 T 12-10-2018 IPR010732 Type VI secretion, TssG-like YPK_2586 0549a8dffc41af53bcac91dd253ca0ca 361 Pfam PF06996 Type VI secretion, TssG 22 319 1.1E-79 T 12-10-2018 IPR010732 Type VI secretion, TssG-like YPK_0912 331940c49fcc9be7c313fc6469545c0a 394 Pfam PF04865 Baseplate J-like protein 82 308 4.6E-25 T 12-10-2018 IPR006949 Baseplate protein J-like YPK_2280 f1724d9399f3711e52870d37e4166b28 422 Gene3D G3DSA:3.40.190.10 141 412 1.9E-108 T 12-10-2018 YPK_2280 f1724d9399f3711e52870d37e4166b28 422 Pfam PF01547 Bacterial extracellular solute-binding protein 36 333 2.0E-55 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein YPK_2280 f1724d9399f3711e52870d37e4166b28 422 SUPERFAMILY SSF53850 22 420 1.48E-77 T 12-10-2018 YPK_2280 f1724d9399f3711e52870d37e4166b28 422 Gene3D G3DSA:3.40.190.10 39 372 1.9E-108 T 12-10-2018 YPK_0885 a3af4c47284ab1a87f3bb0b8d2de298e 177 Pfam PF06892 Phage regulatory protein CII (CP76) 12 168 1.3E-59 T 12-10-2018 IPR009679 Bacteriophage 186, CII YPK_0577 3f532ac5ea92b4482450205dfa2e5415 599 Pfam PF04829 Pre-toxin domain with VENN motif 334 383 1.3E-19 T 12-10-2018 IPR006914 VENN motif-containing domain YPK_2700 f7ce7ff0a084511abc7051a4400a7ad2 298 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 137 296 8.0E-68 T 12-10-2018 IPR005642 Lysine exporter LysO YPK_2700 f7ce7ff0a084511abc7051a4400a7ad2 298 Pfam PF03956 Lysine exporter LysO 113 297 4.1E-56 T 12-10-2018 IPR005642 Lysine exporter LysO YPK_3495 51fc6a74d368285da16d71e6aca2e804 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 284 2.7E-163 T 12-10-2018 IPR031347 Protein AmpE YPK_0895 4ce3c09769903a4221ea501fad007a89 88 Pfam PF04606 Ogr/Delta-like zinc finger 7 53 2.1E-14 T 12-10-2018 IPR007684 Zinc finger, Ogr/Delta-type YPK_3964 d749cbc6ba610e84314e1d7c8d9e4ca5 771 Pfam PF16967 E-set like domain 270 337 1.1E-22 T 12-10-2018 IPR032636 Pilus assembly protein, E-set like domain YPK_3014 1ebea9e2c51dafa0db5bda58d20550aa 160 Pfam PF07295 Zinc-ribbon containing domain 14 157 3.3E-54 T 12-10-2018 IPR009912 Zinc-ribbon containing domain YPK_4241 3a1faeaa1df2c0f1cab04adee9143b7b 442 PIRSF PIRSF005353 3 442 7.1E-178 T 12-10-2018 IPR026033 Purine permease PbuG-like YPK_4241 3a1faeaa1df2c0f1cab04adee9143b7b 442 Pfam PF00860 Permease family 29 402 9.6E-44 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 YPK_1971 ad4fad522302247b04e6a4a8a5dc072d 290 Pfam PF16374 Cycle inhibiting factor (CIF) 111 222 2.0E-24 T 12-10-2018 IPR032278 Cycle inhibiting factor (CIF) YPK_3981 47ac2b8136d5bb9db564377881bc68f7 90 Pfam PF06611 Protein of unknown function (DUF1145) 1 58 6.9E-27 T 12-10-2018 IPR009525 Protein of unknown function DUF1145 YPK_3134 7de454a361a9d353247dc375aac28b25 273 Pfam PF06067 Domain of unknown function (DUF932) 37 262 9.4E-56 T 12-10-2018 IPR026325 Protein of unknown function DUF932 YPK_0719 937e54e17edcba769333825847ecc17a 158 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site YPK_0719 937e54e17edcba769333825847ecc17a 158 PIRSF PIRSF002889 1 96 1.1E-17 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 YPK_0719 937e54e17edcba769333825847ecc17a 158 PIRSF PIRSF002889 72 158 1.5E-17 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 YPK_0719 937e54e17edcba769333825847ecc17a 158 Pfam PF00460 Flagella basal body rod protein 15 39 4.6E-5 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 YPK_2580 ba94976d96468f2af945de3b3969765e 215 Pfam PF16809 NleF caspase inhibitor 56 207 3.5E-53 T 12-10-2018 IPR031829 Effector protein NleF YPK_0612 35f33954a32b4fe6af20c8fa1e6e2b5b 157 SUPERFAMILY SSF160631 45 147 7.85E-7 T 12-10-2018 YPK_3384 dbec16b6eb5d2cfcec8866f17f70e536 381 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 340 2.0E-49 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_2322 1bd4bb3dc4210ecfc7f372fe61b6fa62 851 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 192 514 7.5E-107 T 12-10-2018 IPR008766 Replication gene A protein GO:0006260 YPK_3746 115bfac5d1c53bbfd20ae763ec945cf8 200 Pfam PF03592 Terminase small subunit 14 167 5.0E-17 T 12-10-2018 IPR005335 Terminase small subunit GO:0006323 YPK_3623 ed4d61019ed414eb638201c0a4843d29 233 Pfam PF10144 Bacterial virulence factor haemolysin 1 162 1.0E-67 T 12-10-2018 IPR019305 Uncharacterised protein family Smp YPK_1994 f7421499e03abf8120b419481f0d8b0f 342 Gene3D G3DSA:1.20.1530.20 7 327 3.0E-32 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily YPK_1994 f7421499e03abf8120b419481f0d8b0f 342 PIRSF PIRSF026166 1 335 9.2E-136 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter YPK_1994 f7421499e03abf8120b419481f0d8b0f 342 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 319 2.3E-104 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter YPK_0109 a0f8dbeb491e3ab3f8eb1469f2021f18 167 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 4 164 4.0E-54 T 12-10-2018 IPR010351 Protein of unknown function DUF943 YPK_3370 5a22e148cb1017a56fd3e53400828800 142 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 10 109 2.0E-4 T 12-10-2018 IPR020143 Uncharacterised protein family, RP436 YPK_3140 ad5585615814d1a72899dd592c92dac3 68 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 15 59 2.5E-7 T 12-10-2018 IPR010260 DNA-binding transcriptional activator AlpA YPK_3140 ad5585615814d1a72899dd592c92dac3 68 Gene3D G3DSA:1.10.238.160 11 67 1.0E-13 T 12-10-2018 YPK_2017 b9a827379177741c89e65449687118e8 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 591 2.6E-32 T 12-10-2018 IPR025299 CstA, C-terminal domain YPK_2017 b9a827379177741c89e65449687118e8 688 Pfam PF02554 Carbon starvation protein CstA 32 407 7.3E-170 T 12-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 YPK_3947 0ddbde6aed8a12b4b74ccbb5d810ac0c 176 Pfam PF09335 SNARE associated Golgi protein 41 164 5.8E-13 T 12-10-2018 IPR032816 SNARE associated Golgi protein YPK_1819 d5ce5a01af607ab6f54f1ace5673e1e4 70 Pfam PF13619 KTSC domain 7 64 5.1E-24 T 12-10-2018 IPR025309 KTSC domain YPK_3664 945915502f6e7e837f6bcd9a813baddd 348 Pfam PF01435 Peptidase family M48 157 340 1.3E-26 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 YPK_1523 7aaaeb26f758ee051e0123edaabdc2cf 345 PIRSF PIRSF020588 1 344 5.9E-154 T 12-10-2018 IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 YPK_2497 fbd4a2b90f09b2a0464c30bd021f9900 168 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 153 1.8E-22 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ YPK_4107 3ba4822792f1ee183c4e8db8bda7b287 194 Pfam PF14016 Protein of unknown function (DUF4232) 50 172 1.0E-12 T 12-10-2018 IPR025326 Protein of unknown function DUF4232 YPK_1316 7569368e21bf79b3084a3777eaf3d63c 53 Pfam PF03811 InsA N-terminal domain 1 35 5.8E-9 T 12-10-2018 IPR003220 InsA N-terminal domain GO:0006313 YPK_0896 201378e8b02f0dd73a4e9aa618fd69a7 341 Pfam PF04860 Phage portal protein 95 338 1.3E-14 T 12-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein YPK_0896 201378e8b02f0dd73a4e9aa618fd69a7 341 PIRSF PIRSF018494 1 338 2.0E-145 T 12-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria YPK_0896 201378e8b02f0dd73a4e9aa618fd69a7 341 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 50 323 3.9E-67 T 12-10-2018 IPR006430 Phage portal protein PBSX family YPK_2108 28876950a3b7bf17719f8876883d2e47 511 Pfam PF04293 SpoVR like protein 20 451 6.4E-176 T 12-10-2018 IPR007390 Sporulation stage V, protein R YPK_2880 bc84a6d618e6213e8be858012096ff09 367 Pfam PF05076 Suppressor of fused protein (SUFU) 201 363 3.7E-22 T 12-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 YPK_2560 37900be7da4e418e8e74cc0690b084a3 231 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 4 226 3.9E-97 T 12-10-2018 IPR005261 Conserved hypothetical protein CHP00659 YPK_2560 37900be7da4e418e8e74cc0690b084a3 231 Pfam PF04172 LrgB-like family 12 223 1.4E-77 T 12-10-2018 IPR007300 CidB/LrgB family YPK_1639 6c5c3886e8c6bdd00feb1685acefb65b 371 SUPERFAMILY SSF56925 169 371 1.88E-6 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel YPK_0564 429c14b5f2cc29444be02b49f7299799 189 PRINTS PR01077 Claudin family signature 16 38 2.4E-5 T 12-10-2018 YPK_0564 429c14b5f2cc29444be02b49f7299799 189 PRINTS PR01077 Claudin family signature 47 68 2.4E-5 T 12-10-2018 YPK_0564 429c14b5f2cc29444be02b49f7299799 189 Pfam PF03729 Short repeat of unknown function (DUF308) 26 97 4.7E-13 T 12-10-2018 IPR005325 Protein of unknown function DUF308, membrane YPK_0564 429c14b5f2cc29444be02b49f7299799 189 Pfam PF03729 Short repeat of unknown function (DUF308) 84 152 1.9E-11 T 12-10-2018 IPR005325 Protein of unknown function DUF308, membrane YPK_0597 8e0924970c517dfd4b579ff182147b3a 111 Pfam PF17090 Uncharacterised protein family 46 109 5.2E-11 T 12-10-2018 IPR031381 Uncharacterised protein YtcA YPK_3716 914c1cc3a25dfbc1cfd33a34b8fe5709 292 Pfam PF01136 Peptidase family U32 92 209 1.1E-11 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 YPK_2918 60a99b777376da0483268e83ceb12218 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 20 232 6.6E-62 T 12-10-2018 IPR006214 Bax inhibitor 1-related YPK_3972 e9aa5e2d1f26feb73e76dc83b3ceb0bb 428 Pfam PF11862 Domain of unknown function (DUF3382) 5 103 1.2E-25 T 12-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal YPK_3972 e9aa5e2d1f26feb73e76dc83b3ceb0bb 428 Pfam PF02653 Branched-chain amino acid transport system / permease component 113 398 3.6E-56 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_3946 51d8c302f0a166370563b9fc97ae40e1 501 Pfam PF02646 RmuC family 171 467 6.4E-105 T 12-10-2018 IPR003798 DNA recombination RmuC YPK_4065 8dea072c2c76b963285744c559e087f8 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 302 4.1E-42 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 YPK_0097 dc6ed61d93cb29a695cf4195141a4ca7 159 Gene3D G3DSA:2.60.120.260 17 159 7.8E-37 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily YPK_0097 dc6ed61d93cb29a695cf4195141a4ca7 159 Pfam PF00754 F5/8 type C domain 27 145 3.9E-18 T 12-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain YPK_0097 dc6ed61d93cb29a695cf4195141a4ca7 159 SUPERFAMILY SSF49785 22 147 3.05E-22 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily YPK_0906 b1917e14817840f9b2970f8c642929d4 96 Pfam PF04550 Phage holin family 2 1 86 1.3E-39 T 12-10-2018 IPR007633 Bacteriophage P2, GpY, holin YPK_0906 b1917e14817840f9b2970f8c642929d4 96 ProDom PD064783 PHAGE HOLIN LYSIS P2 MEMBRANE GPY Y TRANSMEMBRANE HOMOLOG INNER 1 86 2.0E-11 T 12-10-2018 IPR007633 Bacteriophage P2, GpY, holin YPK_0154 7b75a2f05fcf6dd6f7325f21569875e2 154 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 2 152 4.3E-65 T 12-10-2018 IPR010351 Protein of unknown function DUF943 YPK_3091 3cb6e86a476ebd327abd787fd4fc235b 138 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 62 138 2.5E-16 T 12-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly YPK_0933 0f3f6ea8ab42746cb1fb4326216fbd0f 109 Pfam PF10761 Protein of unknown function (DUF2590) 7 105 1.3E-42 T 12-10-2018 IPR019697 Bacteriophage HP1, Orf28 YPK_1309 743f4b796755b5dc19012d0d4c3e056a 131 Pfam PF06836 Protein of unknown function (DUF1240) 37 131 2.2E-38 T 12-10-2018 IPR010665 Protein of unknown function DUF1240 YPK_0194 fc5c0bb82cce337e40dc368ca18fd16f 166 Pfam PF08822 Protein of unknown function (DUF1804) 1 164 1.2E-67 T 12-10-2018 IPR014926 Bacteriophage D3112, Orf24 YPK_2818 6e562ba9ce64535dbafd93a4b15155ac 122 Pfam PF10618 Phage tail tube protein 6 121 2.7E-42 T 12-10-2018 IPR019596 Bacteriophage Mu, GpM, tail tube YPK_1471 881c6e9620625deac532dce11eb20352 397 Pfam PF06812 ImpA, N-terminal, type VI secretion system 17 140 2.4E-29 T 12-10-2018 IPR010657 ImpA, N-terminal YPK_1170 770e65b99a96b0442c8998b6fdf2dee8 243 Pfam PF06149 Protein of unknown function (DUF969) 7 224 2.2E-88 T 12-10-2018 IPR010374 Protein of unknown function DUF969 YPK_2569 96d827b70e435291b769575ed2fd2d48 383 Gene3D G3DSA:1.20.1250.20 1 380 2.3E-14 T 12-10-2018 YPK_2569 96d827b70e435291b769575ed2fd2d48 383 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 13 370 5.9E-88 T 12-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB YPK_2569 96d827b70e435291b769575ed2fd2d48 383 SUPERFAMILY SSF103473 6 377 1.44E-23 T 12-10-2018 IPR036259 MFS transporter superfamily YPK_2567 a068b3021ef9e3e1a85637baad8e8adf 388 Pfam PF04235 Protein of unknown function (DUF418) 216 374 6.3E-48 T 12-10-2018 IPR007349 Domain of unknown function DUF418 YPK_3663 ff0c6149a6b193eb713fe0286c36769c 398 Pfam PF05987 Bacterial protein of unknown function (DUF898) 12 391 8.5E-101 T 12-10-2018 IPR010295 Protein of unknown function DUF898 YPK_3545 c647ae4bef35264332401bcefab4ff42 255 Pfam PF09335 SNARE associated Golgi protein 36 159 1.5E-19 T 12-10-2018 IPR032816 SNARE associated Golgi protein YPK_1139 3d444918ed0399c1741fdade644bb669 352 Pfam PF03824 High-affinity nickel-transport protein 48 337 8.7E-91 T 12-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 YPK_1139 3d444918ed0399c1741fdade644bb669 352 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 52 333 3.8E-126 T 12-10-2018 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 YPK_1926 b19dcfaaa23bf06fe23577a1fd8d8bff 109 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 13 101 2.0E-23 T 12-10-2018 IPR009241 Toxin HigB-like YPK_0892 edcd074fa5f5619232182a4722ab77bf 759 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 137 468 6.2E-99 T 12-10-2018 IPR008766 Replication gene A protein GO:0006260 YPK_1809 61658c4b0522d65c1f618cee69f377a1 184 Pfam PF14002 YniB-like protein 15 179 6.1E-80 T 12-10-2018 IPR025229 YniB-like protein YPK_1809 61658c4b0522d65c1f618cee69f377a1 184 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 181 1.0E-101 T 12-10-2018 YPK_3408 04496d2ff4447d138832e930846f886f 395 Pfam PF07906 ShET2 enterotoxin, N-terminal region 10 280 4.2E-106 T 12-10-2018 IPR012927 ShET2 enterotoxin, N-terminal YPK_2022 fa44309a42341fee4ce3296e18590a4c 71 Pfam PF05433 Glycine zipper 2TM domain 34 70 6.6E-7 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 YPK_1625 b98bc7f5b346e5cd01d9e2824024b7b8 351 Pfam PF04829 Pre-toxin domain with VENN motif 59 109 1.9E-23 T 12-10-2018 IPR006914 VENN motif-containing domain YPK_0110 0787476458d6e4cde88aee4710ebff49 168 Pfam PF06092 Enterobacterial putative membrane protein (DUF943) 2 165 5.1E-55 T 12-10-2018 IPR010351 Protein of unknown function DUF943 YPK_1207 4a413d28fcca27b5d4e8f1c9d7a9b7d2 182 Pfam PF10991 Protein of unknown function (DUF2815) 2 173 1.2E-43 T 12-10-2018 IPR022595 Protein of unknown function DUF2815 YPK_1207 4a413d28fcca27b5d4e8f1c9d7a9b7d2 182 Gene3D G3DSA:2.40.50.140 1 172 2.5E-45 T 12-10-2018 YPK_1207 4a413d28fcca27b5d4e8f1c9d7a9b7d2 182 SUPERFAMILY SSF50249 6 173 7.2E-11 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold YPK_0393 485f868e3f9e91d268436ef3fbfb2f87 448 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 446 1.2E-158 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YPK_0393 485f868e3f9e91d268436ef3fbfb2f87 448 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 445 6.9E-154 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 YPK_1205 e1d453f6fa443d86fb8783f4d1494531 259 Pfam PF10065 Uncharacterized conserved protein (DUF2303) 11 249 7.3E-61 T 12-10-2018 IPR019276 Protein of unkown function DUF2303 YPK_3867 1aea7f4244a3f5570e135366b9d58312 439 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 86 106 - T 12-10-2018 IPR013087 Zinc finger C2H2-type GO:0003676 YPK_2058 a10dfc4ca80ad49c5d74feedd63e3785 81 Pfam PF13453 Transcription factor zinc-finger 3 43 6.1E-20 T 12-10-2018 IPR027392 Transcription factor zinc-finger YPK_3957 5b6a82b3f5c1a77f4ac2c5a9e93d3777 318 Pfam PF03547 Membrane transport protein 168 310 2.7E-15 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 YPK_2199 337a682c39559e7759db4c7d6b9075c5 316 SUPERFAMILY SSF51182 27 204 6.52E-9 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily YPK_3100 5ffbc57a86c73bf34489a955b982beeb 113 Pfam PF05939 Phage minor tail protein 4 111 1.6E-31 T 12-10-2018 IPR010265 Bacteriophage lambda, GpM, minor tail YPK_1229 c7880e197be34014c29f41ab354a098f 143 Pfam PF13262 Protein of unknown function (DUF4054) 10 116 4.0E-12 T 12-10-2018 IPR025127 Protein of unknown function DUF4054 YPK_0793 299fa75be9dcaa0bc702874c11944895 216 Pfam PF02517 CAAX protease self-immunity 114 206 6.7E-19 T 12-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 YPK_0902 7091a77ba4c6e9f677246795bed7f89c 162 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 134 8.2E-27 T 12-10-2018 IPR009678 Bacteriophage tail completion protein R YPK_1208 c6d9bc04475c020aebd95fb38e63edff 436 Pfam PF10926 Protein of unknown function (DUF2800) 5 413 5.0E-113 T 12-10-2018 IPR021229 Protein of unknown function DUF2800 YPK_3392 36efdaa7675f733f4fd5453859810b95 286 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 276 1.1E-98 T 12-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 YPK_3577 42f2f3bb0dc7a4a5b1785e9afa69848a 73 Pfam PF12582 Protein of unknown function (DUF3757) 10 49 8.4E-5 T 12-10-2018 IPR022231 Protein of unknown function DUF3757 YPK_2287 2bfc763cb3cdb37f7e27a65db93b7703 68 Pfam PF13333 Integrase core domain 2 42 2.0E-5 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 YPK_0870 05562fe16a978ff22cee7c73b2d5b5ac 145 Pfam PF13924 Lipocalin-like domain 7 143 4.1E-45 T 12-10-2018 IPR024311 Lipocalin-like domain YPK_1247 9938c9c411bea16c4b003ed8bbf1bd7e 172 Pfam PF10908 Protein of unknown function (DUF2778) 24 152 2.7E-37 T 12-10-2018 IPR021225 Protein of unknown function DUF2778 YPK_0874 496e15cb0b679ef7cd711179aafe063a 165 Pfam PF09933 Predicted small integral membrane protein (DUF2165) 3 159 1.1E-67 T 12-10-2018 IPR018681 Protein of unknown function DUF2165, transmembrane YPK_1215 24a3dd4551b8c2730085b91a039c8941 126 Pfam PF05106 Phage holin family (Lysis protein S) 8 98 3.8E-14 T 12-10-2018 IPR006481 Bacteriophage lambda, GpS, holin YPK_3216 a4f8073c8c55f445588e4fbcdb976b21 173 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 48 152 3.1E-41 T 12-10-2018 IPR039366 YscW/ExsB YPK_1223 93f0a321aa807950860216f71db8a5c8 512 Pfam PF06381 Protein of unknown function (DUF1073) 97 450 3.4E-84 T 12-10-2018 IPR024459 Protein of unknown function DUF1073 YPK_0991 35aba4e7588578febe16caa8a0f2949b 262 Pfam PF03609 PTS system sorbose-specific iic component 3 233 5.8E-69 T 12-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 YPK_2827 c92f6cd5e3fa12f16bdbd2a0f462533e 159 Pfam PF06530 Phage antitermination protein Q 20 140 8.3E-41 T 12-10-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 YPK_0104 b312e9b82e21ed1d2d19ff79576fba90 739 Pfam PF05170 AsmA family 1 632 1.4E-117 T 12-10-2018 IPR007844 AsmA YPK_3336 ebbee38d337c7bc9a6f675468d83e69b 113 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 105 6.1E-17 T 12-10-2018 IPR008407 Branched-chain amino acid transport, AzlD YPK_3615 15aa3bdb4df73834110726c17f80446f 207 Pfam PF13689 Domain of unknown function (DUF4154) 63 201 5.6E-33 T 12-10-2018 IPR025293 YfiR-like YPK_0408 981ce91d9a3f1c2366da456b2172beaa 91 Pfam PF12486 Type VI secretion system, EvfB, or VasL 13 45 1.1E-9 T 12-10-2018 IPR021069 ImpA, C-terminal YPK_0574 ef24dadb34b5cec541d58faec4b3fa46 101 Gene3D G3DSA:3.30.70.2920 1 100 3.6E-22 T 12-10-2018 YPK_0475 1d5898c4b577d279314e617fab192fba 119 Pfam PF10828 Protein of unknown function (DUF2570) 15 109 8.7E-7 T 12-10-2018 IPR022538 Protein of unknown function DUF2570 YPK_3120 7bc452c7daa71c061e72ba26a7cd1f27 99 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 9 88 2.4E-12 T 12-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative YPK_0253 a49dc447456fc4accdbb24c44f3291db 143 Pfam PF06836 Protein of unknown function (DUF1240) 50 143 2.7E-33 T 12-10-2018 IPR010665 Protein of unknown function DUF1240 YPK_3576 06fd851a80e6bab949d9a45c2aabac9a 154 Pfam PF12582 Protein of unknown function (DUF3757) 22 140 3.8E-27 T 12-10-2018 IPR022231 Protein of unknown function DUF3757 YPK_2398 655446394ff80fa2f02100fb9f4bc8d8 156 Pfam PF03748 Flagellar basal body-associated protein FliL 54 154 3.4E-21 T 12-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 YPK_3871 6c206ac874ce80773d91066e37e8f137 212 Pfam PF06551 Protein of unknown function (DUF1120) 30 98 6.8E-8 T 12-10-2018 IPR010546 Protein of unknown function DUF1120 YPK_0406 4e7acf3add6f49606a0f2ad2ae9b85eb 162 Pfam PF15428 Immunity protein 26 21 124 2.4E-21 T 12-10-2018 IPR029278 Immunity protein 26 YPK_3997 eb3918b3f94773c7e0847103828fca2d 206 Pfam PF01810 LysE type translocator 14 205 1.2E-50 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 YPK_3997 eb3918b3f94773c7e0847103828fca2d 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 202 9.4E-60 T 12-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 YPK_0584 a21121af42ddc44f7be25e307caf925a 331 Pfam PF13557 Putative MetA-pathway of phenol degradation 115 266 9.2E-6 T 12-10-2018 IPR025737 MetA-pathway of phenol degradation, putative YPK_1919 a9aa0a768ab635be961938bb7f6567da 904 Pfam PF11739 Dicarboxylate transport 661 862 4.4E-66 T 12-10-2018 IPR021730 Dicarboxylate transport YPK_2434 43f37eb09fae70a43e19e225a52e0731 108 Pfam PF07377 Protein of unknown function (DUF1493) 1 108 6.2E-39 T 12-10-2018 IPR010862 Protein of unknown function DUF1493