locus-tag class description CH64_100 PF00005 ABC transporter CH64_1000 PF02470 MlaD protein CH64_1001 PF04403 Paraquat-inducible protein A CH64_1002 PF12848 ABC transporter CH64_1002 PF16326 ABC transporter C-terminal domain CH64_1002 PF00005 ABC transporter CH64_1003 PF01170 Putative RNA methylase family UPF0020 CH64_1003 PF02926 THUMP domain CH64_1003 PF10672 S-adenosylmethionine-dependent methyltransferase CH64_1004 PF03473 MOSC domain CH64_1004 PF00111 2Fe-2S iron-sulfur cluster binding domain CH64_1004 PF03476 MOSC N-terminal beta barrel domain CH64_1005 PF07126 Cell-division protein ZapC CH64_1006 PF01180 Dihydroorotate dehydrogenase CH64_1007 PF01433 Peptidase family M1 domain CH64_1007 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH64_1007 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH64_1008 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH64_1008 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH64_1009 PF00152 tRNA synthetases class II (D, K and N) CH64_1009 PF01336 OB-fold nucleic acid binding domain CH64_101 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH64_1010 PF00267 Gram-negative porin CH64_1011 PF00155 Aminotransferase class I and II CH64_1012 PF00753 Metallo-beta-lactamase superfamily CH64_1013 PF05951 Bacterial protein of unknown function (DUF882) CH64_1014 PF01471 Putative peptidoglycan binding domain CH64_1014 PF03734 L,D-transpeptidase catalytic domain CH64_1015 PF16330 MukB hinge domain CH64_1015 PF04310 MukB N-terminal CH64_1016 PF04288 MukE-like family CH64_1017 PF17192 MukF middle domain CH64_1017 PF03882 MukF winged-helix domain CH64_1017 PF17193 MukF C-terminal domain CH64_102 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CH64_1020 PF02698 DUF218 domain CH64_1021 PF01636 Phosphotransferase enzyme family CH64_1022 PF02348 Cytidylyltransferase CH64_1023 PF03966 Trm112p-like protein CH64_1024 PF00313 'Cold-shock' DNA-binding domain CH64_1025 PF00313 'Cold-shock' DNA-binding domain CH64_1026 PF07063 Domain of unknown function (DUF1338) CH64_1027 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH64_1028 PF00664 ABC transporter transmembrane region CH64_1028 PF00005 ABC transporter CH64_1029 PF00753 Metallo-beta-lactamase superfamily CH64_1029 PF03772 Competence protein CH64_103 PF02654 Cobalamin-5-phosphate synthase CH64_1030 PF00216 Bacterial DNA-binding protein CH64_1031 PF00575 S1 RNA binding domain CH64_1032 PF02224 Cytidylate kinase CH64_1033 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH64_1034 PF00266 Aminotransferase class-V CH64_1035 PF04239 Protein of unknown function (DUF421) CH64_1036 PF00710 Asparaginase, N-terminal CH64_1036 PF17763 Glutaminase/Asparaginase C-terminal domain CH64_1037 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH64_1037 PF18381 YcaO cyclodehydratase C-terminal domain CH64_1038 PF01226 Formate/nitrite transporter CH64_1039 PF01228 Glycine radical CH64_1039 PF02901 Pyruvate formate lyase-like CH64_104 PF00300 Histidine phosphatase superfamily (branch 1) CH64_1040 PF04055 Radical SAM superfamily CH64_1041 PF07690 Major Facilitator Superfamily CH64_1042 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH64_1042 PF02403 Seryl-tRNA synthetase N-terminal domain CH64_1043 PF12002 MgsA AAA+ ATPase C terminal CH64_1043 PF16193 AAA C-terminal domain CH64_1043 PF00004 ATPase family associated with various cellular activities (AAA) CH64_1044 PF03548 Outer membrane lipoprotein carrier protein LolA CH64_1045 PF17854 FtsK alpha domain CH64_1045 PF09397 Ftsk gamma domain CH64_1045 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH64_1045 PF01580 FtsK/SpoIIIE family CH64_1046 PF01037 Lrp/AsnC ligand binding domain CH64_1047 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_1048 PF00005 ABC transporter CH64_1048 PF00664 ABC transporter transmembrane region CH64_1049 PF00005 ABC transporter CH64_1049 PF00664 ABC transporter transmembrane region CH64_105 PF02277 Phosphoribosyltransferase CH64_1050 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH64_1051 PF01176 Translation initiation factor 1A / IF-1 CH64_1052 PF00004 ATPase family associated with various cellular activities (AAA) CH64_1052 PF07724 AAA domain (Cdc48 subfamily) CH64_1052 PF02861 Clp amino terminal domain, pathogenicity island component CH64_1052 PF10431 C-terminal, D2-small domain, of ClpB protein CH64_1052 PF17871 AAA lid domain CH64_1053 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH64_1054 PF00313 'Cold-shock' DNA-binding domain CH64_1055 PF02687 FtsX-like permease family CH64_1055 PF00005 ABC transporter CH64_1055 PF12704 MacB-like periplasmic core domain CH64_1056 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_1057 PF04393 Protein of unknown function (DUF535) CH64_1058 PF11398 Protein of unknown function (DUF2813) CH64_1059 PF03956 Lysine exporter LysO CH64_106 PF00764 Arginosuccinate synthase CH64_1060 PF03063 Prismane/CO dehydrogenase family CH64_1061 PF00175 Oxidoreductase NAD-binding domain CH64_1061 PF00111 2Fe-2S iron-sulfur cluster binding domain CH64_1061 PF00970 Oxidoreductase FAD-binding domain CH64_1062 PF00205 Thiamine pyrophosphate enzyme, central domain CH64_1062 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH64_1062 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_1063 PF04072 Leucine carboxyl methyltransferase CH64_1064 PF01212 Beta-eliminating lyase CH64_1065 PF11066 Protein of unknown function (DUF2867) CH64_1065 PF13460 NAD(P)H-binding CH64_1066 PF01370 NAD dependent epimerase/dehydratase family CH64_1067 PF12883 Protein of unknown function (DUF3828) CH64_1068 PF00005 ABC transporter CH64_1069 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_107 PF01554 MatE CH64_1070 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1071 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1072 PF07690 Major Facilitator Superfamily CH64_1073 PF00392 Bacterial regulatory proteins, gntR family CH64_1073 PF07729 FCD domain CH64_1074 PF09134 Invasin, domain 3 CH64_1074 PF07979 Intimin C-type lectin domain CH64_1074 PF11924 Inverse autotransporter, beta-domain CH64_1074 PF02369 Bacterial Ig-like domain (group 1) CH64_1076 PF00328 Histidine phosphatase superfamily (branch 2) CH64_1077 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_1078 PF05958 tRNA (Uracil-5-)-methyltransferase CH64_1079 PF10767 Protein of unknown function (DUF2593) CH64_108 PF00072 Response regulator receiver domain CH64_108 PF01584 CheW-like domain CH64_1080 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1081 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1082 PF00005 ABC transporter CH64_1082 PF08402 TOBE domain CH64_1083 PF13416 Bacterial extracellular solute-binding protein CH64_1084 PF10722 Putative bacterial sensory transduction regulator CH64_1085 PF07214 Protein of unknown function (DUF1418) CH64_1086 PF00462 Glutaredoxin CH64_1087 PF06826 Predicted Permease Membrane Region CH64_1087 PF02080 TrkA-C domain CH64_1090 PF06892 Phage regulatory protein CII (CP76) CH64_1092 PF16452 Bacteriophage CI repressor C-terminal domain CH64_1092 PF07022 Bacteriophage CI repressor helix-turn-helix domain CH64_1098 PF01569 PAP2 superfamily CH64_1099 PF01791 DeoC/LacD family aldolase CH64_11 PF13407 Periplasmic binding protein domain CH64_110 PF05930 Prophage CP4-57 regulatory protein (AlpA) CH64_1100 PF00455 DeoR C terminal sensor domain CH64_1100 PF08220 DeoR-like helix-turn-helix domain CH64_1102 PF03315 Serine dehydratase beta chain CH64_1102 PF03313 Serine dehydratase alpha chain CH64_1103 PF00768 D-alanyl-D-alanine carboxypeptidase CH64_1103 PF07943 Penicillin-binding protein 5, C-terminal domain CH64_1104 PF00291 Pyridoxal-phosphate dependent enzyme CH64_1104 PF00571 CBS domain CH64_1105 PF01053 Cys/Met metabolism PLP-dependent enzyme CH64_1106 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1107 PF09383 NIL domain CH64_1107 PF00005 ABC transporter CH64_1108 PF03180 NLPA lipoprotein CH64_1112 PF13417 Glutathione S-transferase, N-terminal domain CH64_1112 PF00043 Glutathione S-transferase, C-terminal domain CH64_1113 PF00593 TonB dependent receptor CH64_1113 PF07715 TonB-dependent Receptor Plug Domain CH64_1114 PF00324 Amino acid permease CH64_1115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1115 PF03466 LysR substrate binding domain CH64_1116 PF03601 Conserved hypothetical protein 698 CH64_1117 PF01261 Xylose isomerase-like TIM barrel CH64_1118 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH64_1118 PF02378 Phosphotransferase system, EIIC CH64_1119 PF00294 pfkB family carbohydrate kinase CH64_1120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH64_1120 PF00381 PTS HPr component phosphorylation site CH64_1121 PF13344 Haloacid dehalogenase-like hydrolase CH64_1121 PF00293 NUDIX domain CH64_1122 PF03692 Putative zinc- or iron-chelating domain CH64_1123 PF03222 Tryptophan/tyrosine permease family CH64_1124 PF09285 Elongation factor P, C-terminal CH64_1124 PF01132 Elongation factor P (EF-P) OB domain CH64_1124 PF08207 Elongation factor P (EF-P) KOW-like domain CH64_1125 PF03786 D-mannonate dehydratase (UxuA) CH64_1126 PF01232 Mannitol dehydrogenase Rossmann domain CH64_1126 PF08125 Mannitol dehydrogenase C-terminal domain CH64_1127 PF07729 FCD domain CH64_1127 PF00392 Bacterial regulatory proteins, gntR family CH64_1129 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH64_1129 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH64_1130 PF01569 PAP2 superfamily CH64_1131 PF00877 NlpC/P60 family CH64_1132 PF12792 CSS motif domain associated with EAL CH64_1132 PF00563 EAL domain CH64_1133 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_1134 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1135 PF12911 N-terminal TM domain of oligopeptide transport permease C CH64_1135 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1136 PF00005 ABC transporter CH64_1136 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH64_1137 PF13989 YejG-like protein CH64_1139 PF07690 Major Facilitator Superfamily CH64_1140 PF01479 S4 domain CH64_1140 PF00849 RNA pseudouridylate synthase CH64_1141 PF04851 Type III restriction enzyme, res subunit CH64_1141 PF00271 Helicase conserved C-terminal domain CH64_1142 PF01386 Ribosomal L25p family CH64_1143 PF04245 37-kD nucleoid-associated bacterial protein CH64_1144 PF07208 Protein of unknown function (DUF1414) CH64_1145 PF11893 Domain of unknown function (DUF3413) CH64_1145 PF00884 Sulfatase CH64_1147 PF00232 Glycosyl hydrolase family 1 CH64_1148 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH64_1148 PF02378 Phosphotransferase system, EIIC CH64_1148 PF00367 phosphotransferase system, EIIB CH64_1149 PF01418 Helix-turn-helix domain, rpiR family CH64_1149 PF01380 SIS domain CH64_1150 PF06183 DinI-like family CH64_1151 PF01278 Omptin family CH64_1152 PF12706 Beta-lactamase superfamily domain CH64_1155 PF00144 Beta-lactamase CH64_1158 PF00267 Gram-negative porin CH64_1159 PF07690 Major Facilitator Superfamily CH64_1160 PF16359 RcsD-ABL domain CH64_1160 PF01627 Hpt domain CH64_1160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_1161 PF00072 Response regulator receiver domain CH64_1161 PF00196 Bacterial regulatory proteins, luxR family CH64_1162 PF00072 Response regulator receiver domain CH64_1162 PF00512 His Kinase A (phospho-acceptor) domain CH64_1162 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_1162 PF09456 RcsC Alpha-Beta-Loop (ABL) CH64_1163 PF03989 DNA gyrase C-terminal domain, beta-propeller CH64_1163 PF00521 DNA gyrase/topoisomerase IV, subunit A CH64_1165 PF02867 Ribonucleotide reductase, barrel domain CH64_1165 PF00317 Ribonucleotide reductase, all-alpha domain CH64_1165 PF03477 ATP cone domain CH64_1166 PF00268 Ribonucleotide reductase, small chain CH64_1167 PF00111 2Fe-2S iron-sulfur cluster binding domain CH64_1168 PF03974 Ecotin CH64_1169 PF00994 Probable molybdopterin binding domain CH64_1170 PF03222 Tryptophan/tyrosine permease family CH64_1171 PF07437 YfaZ precursor CH64_1172 PF06628 Catalase-related immune-responsive CH64_1172 PF00199 Catalase CH64_1173 PF13193 AMP-binding enzyme C-terminal domain CH64_1173 PF00501 AMP-binding enzyme CH64_1174 PF13378 Enolase C-terminal domain-like CH64_1175 PF00378 Enoyl-CoA hydratase/isomerase CH64_1176 PF12697 Alpha/beta hydrolase family CH64_1177 PF16582 Middle domain of thiamine pyrophosphate CH64_1177 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH64_1177 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_1178 PF00425 chorismate binding enzyme CH64_1180 PF05957 Bacterial protein of unknown function (DUF883) CH64_1181 PF00920 Dehydratase family CH64_1182 PF03928 Haem-degrading CH64_1183 PF07690 Major Facilitator Superfamily CH64_1184 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH64_1184 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH64_1185 PF00356 Bacterial regulatory proteins, lacI family CH64_1186 PF00106 short chain dehydrogenase CH64_1187 PF01202 Shikimate kinase CH64_1188 PF04074 YhcH/YjgK/YiaL CH64_1189 PF06496 Protein of unknown function (DUF1097) CH64_1191 PF00361 Proton-conducting membrane transporter CH64_1192 PF00361 Proton-conducting membrane transporter CH64_1193 PF00361 Proton-conducting membrane transporter CH64_1193 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH64_1194 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH64_1195 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH64_1196 PF12838 4Fe-4S dicluster domain CH64_1197 PF00146 NADH dehydrogenase CH64_1198 PF01568 Molydopterin dinucleotide binding domain CH64_1198 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH64_1198 PF00384 Molybdopterin oxidoreductase CH64_1198 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH64_1199 PF10531 SLBB domain CH64_1199 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH64_1199 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH64_12 PF00005 ABC transporter CH64_1201 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH64_1201 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH64_1202 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH64_1203 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH64_1204 PF03466 LysR substrate binding domain CH64_1204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1205 PF00155 Aminotransferase class I and II CH64_1207 PF03600 Citrate transporter CH64_1207 PF02080 TrkA-C domain CH64_1209 PF13419 Haloacid dehalogenase-like hydrolase CH64_1210 PF03887 YfbU domain CH64_1211 PF04217 Protein of unknown function, DUF412 CH64_1212 PF00871 Acetokinase family CH64_1213 PF07085 DRTGG domain CH64_1213 PF01515 Phosphate acetyl/butaryl transferase CH64_1214 PF00356 Bacterial regulatory proteins, lacI family CH64_1214 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH64_1215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH64_1217 PF03611 PTS system sugar-specific permease component CH64_1218 PF00293 NUDIX domain CH64_1219 PF12850 Calcineurin-like phosphoesterase superfamily domain CH64_1221 PF01370 NAD dependent epimerase/dehydratase family CH64_1221 PF08338 Domain of unknown function (DUF1731) CH64_1222 PF00005 ABC transporter CH64_1223 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1224 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1225 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_1226 PF02441 Flavoprotein CH64_1227 PF00156 Phosphoribosyl transferase domain CH64_1228 PF02674 Colicin V production protein CH64_1229 PF05036 Sporulation related domain CH64_1230 PF02875 Mur ligase family, glutamate ligase domain CH64_1230 PF08245 Mur ligase middle domain CH64_1231 PF01039 Carboxyl transferase domain CH64_1231 PF17848 Acetyl-coA carboxylase zinc finger domain CH64_1232 PF09335 SNARE associated Golgi protein CH64_1233 PF01416 tRNA pseudouridine synthase CH64_1234 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH64_1234 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH64_1235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH64_1235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH64_1235 PF11890 Domain of unknown function (DUF3410) CH64_1237 PF00892 EamA-like transporter family CH64_1239 PF00155 Aminotransferase class I and II CH64_1240 PF00578 AhpC/TSA family CH64_1245 PF03600 Citrate transporter CH64_1246 PF00328 Histidine phosphatase superfamily (branch 2) CH64_1247 PF00356 Bacterial regulatory proteins, lacI family CH64_1248 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH64_1249 PF02378 Phosphotransferase system, EIIC CH64_125 PF00271 Helicase conserved C-terminal domain CH64_1250 PF00232 Glycosyl hydrolase family 1 CH64_1251 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH64_1253 PF01177 Asp/Glu/Hydantoin racemase CH64_1254 PF00990 Diguanylate cyclase, GGDEF domain CH64_1254 PF00072 Response regulator receiver domain CH64_1255 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_1255 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_1256 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH64_1256 PF01266 FAD dependent oxidoreductase CH64_1257 PF08891 YfcL protein CH64_1258 PF04315 Elongation factor P hydroxylase CH64_1259 PF01925 Sulfite exporter TauE/SafE CH64_1260 PF03411 Penicillin-insensitive murein endopeptidase CH64_1261 PF01264 Chorismate synthase CH64_1262 PF05175 Methyltransferase small domain CH64_1263 PF01713 Smr domain CH64_1264 PF00300 Histidine phosphatase superfamily (branch 1) CH64_1265 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH64_1265 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH64_1265 PF00378 Enoyl-CoA hydratase/isomerase CH64_1266 PF00108 Thiolase, N-terminal domain CH64_1266 PF02803 Thiolase, C-terminal domain CH64_1267 PF04175 Protein of unknown function (DUF406) CH64_1268 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH64_1269 PF04333 MlaA lipoprotein CH64_1270 PF03918 Cytochrome C biogenesis protein CH64_1271 PF03918 Cytochrome C biogenesis protein CH64_1272 PF08534 Redoxin CH64_1273 PF01578 Cytochrome C assembly protein CH64_1273 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH64_1274 PF03100 CcmE CH64_1275 PF04995 Heme exporter protein D (CcmD) CH64_1276 PF01578 Cytochrome C assembly protein CH64_1277 PF03379 CcmB protein CH64_1278 PF00005 ABC transporter CH64_1279 PF01226 Formate/nitrite transporter CH64_1281 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CH64_1282 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH64_1282 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH64_1283 PF07690 Major Facilitator Superfamily CH64_1284 PF13378 Enolase C-terminal domain-like CH64_1284 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH64_1285 PF01081 KDPG and KHG aldolase CH64_1286 PF05035 2-keto-3-deoxy-galactonokinase CH64_1287 PF07729 FCD domain CH64_1287 PF00392 Bacterial regulatory proteins, gntR family CH64_1288 PF08274 PhnA Zinc-Ribbon CH64_1288 PF03831 PhnA domain CH64_1289 PF03551 Transcriptional regulator PadR-like family CH64_1291 PF00232 Glycosyl hydrolase family 1 CH64_1292 PF02378 Phosphotransferase system, EIIC CH64_1292 PF00367 phosphotransferase system, EIIB CH64_1294 PF03466 LysR substrate binding domain CH64_1294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1295 PF00196 Bacterial regulatory proteins, luxR family CH64_1295 PF00072 Response regulator receiver domain CH64_1296 PF00356 Bacterial regulatory proteins, lacI family CH64_1297 PF04264 YceI-like domain CH64_1298 PF01292 Prokaryotic cytochrome b561 CH64_13 PF02653 Branched-chain amino acid transport system / permease component CH64_1301 PF00005 ABC transporter CH64_1302 PF02405 Permease MlaE CH64_1303 PF07690 Major Facilitator Superfamily CH64_1305 PF07969 Amidohydrolase family CH64_1306 PF00324 Amino acid permease CH64_1307 PF13406 Transglycosylase SLT domain CH64_1309 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1310 PF00005 ABC transporter CH64_1312 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH64_1312 PF00384 Molybdopterin oxidoreductase CH64_1312 PF01568 Molydopterin dinucleotide binding domain CH64_1313 PF12800 4Fe-4S binding domain CH64_1313 PF13247 4Fe-4S dicluster domain CH64_1314 PF04976 DMSO reductase anchor subunit (DmsC) CH64_1315 PF02613 Nitrate reductase delta subunit CH64_1317 PF01292 Prokaryotic cytochrome b561 CH64_1318 PF00155 Aminotransferase class I and II CH64_1319 PF13302 Acetyltransferase (GNAT) domain CH64_1320 PF07350 Protein of unknown function (DUF1479) CH64_1321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_1321 PF06580 Histidine kinase CH64_1321 PF07694 5TMR of 5TMR-LYT CH64_1322 PF00072 Response regulator receiver domain CH64_1322 PF04397 LytTr DNA-binding domain CH64_1323 PF07690 Major Facilitator Superfamily CH64_1324 PF02685 Glucokinase CH64_1326 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1326 PF03466 LysR substrate binding domain CH64_1327 PF00205 Thiamine pyrophosphate enzyme, central domain CH64_1327 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH64_1327 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_1328 PF00248 Aldo/keto reductase family CH64_1330 PF01566 Natural resistance-associated macrophage protein CH64_1331 PF07670 Nucleoside recognition CH64_1331 PF01773 Na+ dependent nucleoside transporter N-terminus CH64_1331 PF07662 Na+ dependent nucleoside transporter C-terminus CH64_1332 PF12557 Cob(I)alamin adenosyltransferase N terminal CH64_1332 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH64_1333 PF05683 Fumarase C-terminus CH64_1333 PF05681 Fumarate hydratase (Fumerase) CH64_1334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1334 PF03466 LysR substrate binding domain CH64_1335 PF10414 Sirohaem synthase dimerisation region CH64_1335 PF14824 Sirohaem biosynthesis protein central CH64_1335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH64_1336 PF00288 GHMP kinases N terminal domain CH64_1337 PF02310 B12 binding domain CH64_1338 PF13941 MutL protein CH64_1339 PF06368 Methylaspartate mutase E chain (MutE) CH64_1340 PF07476 Methylaspartate ammonia-lyase C-terminus CH64_1340 PF05034 Methylaspartate ammonia-lyase N-terminus CH64_1343 PF00375 Sodium:dicarboxylate symporter family CH64_1349 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH64_1354 PF12843 Putative quorum-sensing-regulated virulence factor CH64_1355 PF00533 BRCA1 C Terminus (BRCT) domain CH64_1355 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH64_1355 PF12826 Helix-hairpin-helix motif CH64_1355 PF01653 NAD-dependent DNA ligase adenylation domain CH64_1355 PF03120 NAD-dependent DNA ligase OB-fold domain CH64_1356 PF04354 ZipA, C-terminal FtsZ-binding domain CH64_1358 PF00291 Pyridoxal-phosphate dependent enzyme CH64_1359 PF00381 PTS HPr component phosphorylation site CH64_1360 PF05524 PEP-utilising enzyme, N-terminal CH64_1360 PF00391 PEP-utilising enzyme, mobile domain CH64_1360 PF02896 PEP-utilising enzyme, TIM barrel domain CH64_1361 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH64_1362 PF16527 Two-component sensor protein CpxA, periplasmic domain CH64_1362 PF00672 HAMP domain CH64_1362 PF00512 His Kinase A (phospho-acceptor) domain CH64_1362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_1363 PF00072 Response regulator receiver domain CH64_1363 PF00486 Transcriptional regulatory protein, C terminal CH64_1364 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_1365 PF00005 ABC transporter CH64_1365 PF12704 MacB-like periplasmic core domain CH64_1365 PF02687 FtsX-like permease family CH64_1366 PF00291 Pyridoxal-phosphate dependent enzyme CH64_1367 PF00005 ABC transporter CH64_1368 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1369 PF00528 Binding-protein-dependent transport system inner membrane component CH64_137 PF04851 Type III restriction enzyme, res subunit CH64_137 PF08774 VRR-NUC domain CH64_1371 PF07690 Major Facilitator Superfamily CH64_1372 PF01380 SIS domain CH64_1372 PF01418 Helix-turn-helix domain, rpiR family CH64_1373 PF04074 YhcH/YjgK/YiaL CH64_1374 PF00480 ROK family CH64_1375 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH64_1376 PF00701 Dihydrodipicolinate synthetase family CH64_1377 PF04261 Dyp-type peroxidase family CH64_1378 PF06572 Protein of unknown function (DUF1131) CH64_1379 PF04076 Bacterial OB fold (BOF) protein CH64_138 PF18273 Type III R-M EcoP15I C-terminal domain CH64_138 PF01555 DNA methylase CH64_1380 PF00583 Acetyltransferase (GNAT) family CH64_1381 PF01218 Coproporphyrinogen III oxidase CH64_1382 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH64_1383 PF00390 Malic enzyme, N-terminal domain CH64_1383 PF01515 Phosphate acetyl/butaryl transferase CH64_1383 PF03949 Malic enzyme, NAD binding domain CH64_1384 PF00293 NUDIX domain CH64_1385 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH64_1387 PF03264 NapC/NirT cytochrome c family, N-terminal region CH64_1389 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH64_139 PF13356 Arm DNA-binding domain CH64_139 PF00589 Phage integrase family CH64_1390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH64_1390 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH64_1390 PF01568 Molydopterin dinucleotide binding domain CH64_1390 PF00384 Molybdopterin oxidoreductase CH64_1391 PF03927 NapD protein CH64_1392 PF12838 4Fe-4S dicluster domain CH64_1392 PF13187 4Fe-4S dicluster domain CH64_1394 PF00196 Bacterial regulatory proteins, luxR family CH64_1394 PF00072 Response regulator receiver domain CH64_1396 PF00873 AcrB/AcrD/AcrF family CH64_1398 PF03960 ArsC family CH64_1399 PF07687 Peptidase dimerisation domain CH64_1399 PF01546 Peptidase family M20/M25/M40 CH64_14 PF01226 Formate/nitrite transporter CH64_1400 PF02557 D-alanyl-D-alanine carboxypeptidase CH64_1401 PF13980 Uncharacterised protein family (UPF0370) CH64_1402 PF02230 Phospholipase/Carboxylesterase CH64_1403 PF13718 GNAT acetyltransferase 2 CH64_1403 PF05127 Helicase CH64_1403 PF17176 tRNA-binding domain CH64_1404 PF04284 Protein of unknown function (DUF441) CH64_1405 PF04228 Putative neutral zinc metallopeptidase CH64_1406 PF01259 SAICAR synthetase CH64_1407 PF06804 NlpB/DapX lipoprotein CH64_1408 PF00701 Dihydrodipicolinate synthetase family CH64_1409 PF01842 ACT domain CH64_141 PF01306 LacY proton/sugar symporter CH64_1410 PF00578 AhpC/TSA family CH64_1411 PF01594 AI-2E family transporter CH64_1412 PF07720 Tetratricopeptide repeat CH64_1412 PF01435 Peptidase family M48 CH64_1413 PF03960 ArsC family CH64_1414 PF00308 Bacterial dnaA protein CH64_1415 PF00860 Permease family CH64_1417 PF00586 AIR synthase related protein, N-terminal domain CH64_1417 PF02769 AIR synthase related protein, C-terminal domain CH64_1418 PF00551 Formyl transferase CH64_1419 PF13302 Acetyltransferase (GNAT) domain CH64_142 PF16875 Glycosyl hydrolase family 36 N-terminal domain CH64_142 PF16874 Glycosyl hydrolase family 36 C-terminal domain CH64_1422 PF00005 ABC transporter CH64_1423 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1424 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1425 PF13089 Polyphosphate kinase N-terminal domain CH64_1425 PF17941 Polyphosphate kinase C-terminal domain 1 CH64_1425 PF13090 Polyphosphate kinase C-terminal domain 2 CH64_1425 PF02503 Polyphosphate kinase middle domain CH64_1426 PF02541 Ppx/GppA phosphatase family CH64_1428 PF00571 CBS domain CH64_1428 PF01769 Divalent cation transporter CH64_1428 PF03448 MgtE intracellular N domain CH64_1429 PF08448 PAS fold CH64_1429 PF08447 PAS fold CH64_1429 PF05231 MASE1 CH64_1429 PF00990 Diguanylate cyclase, GGDEF domain CH64_1429 PF00563 EAL domain CH64_1429 PF13426 PAS domain CH64_143 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH64_143 PF00356 Bacterial regulatory proteins, lacI family CH64_1430 PF00012 Hsp70 protein CH64_1431 PF13533 Biotin-lipoyl like CH64_1432 PF00873 AcrB/AcrD/AcrF family CH64_1433 PF00873 AcrB/AcrD/AcrF family CH64_1435 PF07690 Major Facilitator Superfamily CH64_1436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_1436 PF00512 His Kinase A (phospho-acceptor) domain CH64_1436 PF00672 HAMP domain CH64_1437 PF00072 Response regulator receiver domain CH64_1437 PF00486 Transcriptional regulatory protein, C terminal CH64_1438 PF07411 Domain of unknown function (DUF1508) CH64_144 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH64_144 PF02753 Pili assembly chaperone PapD, C-terminal domain CH64_1440 PF00781 Diacylglycerol kinase catalytic domain CH64_1441 PF03608 PTS system enzyme II sorbitol-specific factor CH64_1442 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CH64_1442 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CH64_1443 PF03829 PTS system glucitol/sorbitol-specific IIA component CH64_1444 PF00106 short chain dehydrogenase CH64_1445 PF06923 Glucitol operon activator protein (GutM) CH64_1446 PF00455 DeoR C terminal sensor domain CH64_1446 PF08220 DeoR-like helix-turn-helix domain CH64_1447 PF01380 SIS domain CH64_1447 PF00571 CBS domain CH64_1450 PF08543 Phosphomethylpyrimidine kinase CH64_1453 PF02540 NAD synthase CH64_1453 PF00958 GMP synthase C terminal domain CH64_1453 PF00117 Glutamine amidotransferase class-I CH64_1454 PF00571 CBS domain CH64_1454 PF00478 IMP dehydrogenase / GMP reductase domain CH64_1455 PF13742 OB-fold nucleic acid binding domain CH64_1455 PF02601 Exonuclease VII, large subunit CH64_1456 PF07191 zinc-ribbons CH64_1458 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH64_1458 PF01926 50S ribosome-binding GTPase CH64_1459 PF13360 PQQ-like domain CH64_146 PF00577 Outer membrane usher protein CH64_146 PF13954 PapC N-terminal domain CH64_146 PF13953 PapC C-terminal domain CH64_1460 PF09976 Tetratricopeptide repeat-like domain CH64_1461 PF13393 Histidyl-tRNA synthetase CH64_1461 PF03129 Anticodon binding domain CH64_1462 PF04551 GcpE protein CH64_1463 PF13464 Domain of unknown function (DUF4115) CH64_1465 PF04055 Radical SAM superfamily CH64_1466 PF00334 Nucleoside diphosphate kinase CH64_1467 PF00912 Transglycosylase CH64_1467 PF06832 Penicillin-Binding Protein C-terminus Family CH64_1467 PF00905 Penicillin binding protein transpeptidase domain CH64_1468 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH64_1468 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH64_1468 PF00207 Alpha-2-macroglobulin family CH64_1468 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH64_1468 PF07678 A-macroglobulin TED domain CH64_1468 PF07703 Alpha-2-macroglobulin bait region domain CH64_1468 PF01835 MG2 domain CH64_1468 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CH64_1468 PF17962 Bacterial macroglobulin domain 6 CH64_147 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH64_147 PF02753 Pili assembly chaperone PapD, C-terminal domain CH64_1470 PF00384 Molybdopterin oxidoreductase CH64_1471 PF03212 Pertactin CH64_1471 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH64_1471 PF03797 Autotransporter beta-domain CH64_1473 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH64_1473 PF03797 Autotransporter beta-domain CH64_1473 PF03212 Pertactin CH64_1474 PF14581 SseB protein C-terminal domain CH64_1474 PF07179 SseB protein N-terminal domain CH64_1475 PF12404 Peptidase CH64_1475 PF00883 Cytosol aminopeptidase family, catalytic domain CH64_1476 PF04384 Iron-sulphur cluster assembly CH64_1477 PF00111 2Fe-2S iron-sulfur cluster binding domain CH64_1478 PF00012 Hsp70 protein CH64_1479 PF07743 HSCB C-terminal oligomerisation domain CH64_1479 PF00226 DnaJ domain CH64_1480 PF01521 Iron-sulphur cluster biosynthesis CH64_1481 PF01592 NifU-like N terminal domain CH64_1482 PF00266 Aminotransferase class-V CH64_1483 PF02082 Transcriptional regulator CH64_1484 PF00588 SpoU rRNA Methylase family CH64_1485 PF00459 Inositol monophosphatase family CH64_1486 PF03824 High-affinity nickel-transport protein CH64_1487 PF06226 Protein of unknown function (DUF1007) CH64_1488 PF12832 MFS_1 like family CH64_1489 PF00874 PRD domain CH64_149 PF00512 His Kinase A (phospho-acceptor) domain CH64_149 PF01627 Hpt domain CH64_149 PF00989 PAS fold CH64_149 PF00072 Response regulator receiver domain CH64_149 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_149 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_1490 PF00464 Serine hydroxymethyltransferase CH64_1491 PF00175 Oxidoreductase NAD-binding domain CH64_1491 PF00042 Globin CH64_1491 PF00970 Oxidoreductase FAD-binding domain CH64_1492 PF14503 YhfZ C-terminal domain CH64_1492 PF14502 Helix-turn-helix domain CH64_1493 PF00543 Nitrogen regulatory protein P-II CH64_1494 PF00795 Carbon-nitrogen hydrolase CH64_1494 PF02540 NAD synthase CH64_1495 PF00072 Response regulator receiver domain CH64_1495 PF00158 Sigma-54 interaction domain CH64_1496 PF13942 YfhG lipoprotein CH64_1497 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_1497 PF00512 His Kinase A (phospho-acceptor) domain CH64_1499 PF02769 AIR synthase related protein, C-terminal domain CH64_1499 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH64_1499 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH64_15 PF02954 Bacterial regulatory protein, Fis family CH64_15 PF01590 GAF domain CH64_15 PF00158 Sigma-54 interaction domain CH64_150 PF00196 Bacterial regulatory proteins, luxR family CH64_150 PF00072 Response regulator receiver domain CH64_1500 PF01464 Transglycosylase SLT domain CH64_1500 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_1501 PF14437 MafB19-like deaminase CH64_1503 PF01380 SIS domain CH64_1504 PF01380 SIS domain CH64_1504 PF01418 Helix-turn-helix domain, rpiR family CH64_1505 PF12838 4Fe-4S dicluster domain CH64_1506 PF02447 GntP family permease CH64_1507 PF01648 4'-phosphopantetheinyl transferase superfamily CH64_1508 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH64_1509 PF02565 Recombination protein O C terminal CH64_1509 PF11967 Recombination protein O N terminal CH64_1510 PF01926 50S ribosome-binding GTPase CH64_1510 PF07650 KH domain CH64_1511 PF00035 Double-stranded RNA binding motif CH64_1511 PF14622 Ribonuclease-III-like CH64_1512 PF10502 Signal peptidase, peptidase S26 CH64_1513 PF00679 Elongation factor G C-terminus CH64_1513 PF00009 Elongation factor Tu GTP binding domain CH64_1513 PF03144 Elongation factor Tu domain 2 CH64_1513 PF06421 GTP-binding protein LepA C-terminus CH64_1516 PF03888 MucB/RseB N-terminal domain CH64_1516 PF17188 MucB/RseB C-terminal domain CH64_1517 PF03873 Anti sigma-E protein RseA, C-terminal domain CH64_1517 PF03872 Anti sigma-E protein RseA, N-terminal domain CH64_1518 PF04542 Sigma-70 region 2 CH64_1518 PF08281 Sigma-70, region 4 CH64_1519 PF02910 Fumarate reductase flavoprotein C-term CH64_1519 PF00890 FAD binding domain CH64_1520 PF05175 Methyltransferase small domain CH64_1521 PF00270 DEAD/DEAH box helicase CH64_1521 PF00271 Helicase conserved C-terminal domain CH64_1522 PF12796 Ankyrin repeats (3 copies) CH64_1523 PF01228 Glycine radical CH64_1524 PF03167 Uracil DNA glycosylase superfamily CH64_1525 PF01025 GrpE CH64_1526 PF01513 ATP-NAD kinase CH64_1527 PF02463 RecF/RecN/SMC N terminal domain CH64_1528 PF04355 SmpA / OmlA family CH64_1529 PF03658 RnfH family Ubiquitin CH64_1530 PF03364 Polyketide cyclase / dehydrase and lipid transport CH64_1531 PF01668 SmpB protein CH64_1532 PF13356 Arm DNA-binding domain CH64_1532 PF00589 Phage integrase family CH64_1534 PF05930 Prophage CP4-57 regulatory protein (AlpA) CH64_1537 PF07638 ECF sigma factor CH64_1542 PF13361 UvrD-like helicase C-terminal domain CH64_1542 PF00580 UvrD/REP helicase N-terminal domain CH64_1550 PF01926 50S ribosome-binding GTPase CH64_1551 PF13280 WYL domain CH64_1551 PF08220 DeoR-like helix-turn-helix domain CH64_1554 PF06067 Domain of unknown function (DUF932) CH64_1555 PF04002 RadC-like JAB domain CH64_1556 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CH64_1557 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH64_1563 PF05666 Fels-1 Prophage Protein-like CH64_1564 PF04794 YdjC-like protein CH64_1565 PF12833 Helix-turn-helix domain CH64_1565 PF07883 Cupin domain CH64_1566 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH64_1567 PF00232 Glycosyl hydrolase family 1 CH64_1568 PF02378 Phosphotransferase system, EIIC CH64_1569 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH64_157 PF00005 ABC transporter CH64_157 PF08402 TOBE domain CH64_1570 PF07995 Glucose / Sorbosone dehydrogenase CH64_1571 PF00248 Aldo/keto reductase family CH64_1572 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH64_1573 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH64_1574 PF07885 Ion channel CH64_1574 PF02254 TrkA-N domain CH64_1575 PF06411 HdeA/HdeB family CH64_1576 PF03824 High-affinity nickel-transport protein CH64_1577 PF03253 Urea transporter CH64_1578 PF01774 UreD urease accessory protein CH64_1579 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH64_158 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1580 PF01730 UreF CH64_1581 PF05194 UreE urease accessory protein, C-terminal domain CH64_1581 PF02814 UreE urease accessory protein, N-terminal domain CH64_1582 PF00449 Urease alpha-subunit, N-terminal domain CH64_1582 PF01979 Amidohydrolase family CH64_1583 PF00699 Urease beta subunit CH64_1584 PF00547 Urease, gamma subunit CH64_1586 PF00005 ABC transporter CH64_1587 PF00005 ABC transporter CH64_1588 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1588 PF12911 N-terminal TM domain of oligopeptide transport permease C CH64_1589 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_1593 PF00313 'Cold-shock' DNA-binding domain CH64_1595 PF06711 Protein of unknown function (DUF1198) CH64_1596 PF09400 Protein of unknown function (DUF2002) CH64_1597 PF07690 Major Facilitator Superfamily CH64_1598 PF06392 Acid shock protein repeat CH64_1599 PF05957 Bacterial protein of unknown function (DUF883) CH64_16 PF01568 Molydopterin dinucleotide binding domain CH64_16 PF00384 Molybdopterin oxidoreductase CH64_16 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH64_160 PF07690 Major Facilitator Superfamily CH64_1600 PF00392 Bacterial regulatory proteins, gntR family CH64_1600 PF00155 Aminotransferase class I and II CH64_1601 PF02627 Carboxymuconolactone decarboxylase family CH64_1602 PF00462 Glutaredoxin CH64_1603 PF07972 NrdI Flavodoxin like CH64_1604 PF08343 Ribonucleotide reductase N-terminal CH64_1604 PF02867 Ribonucleotide reductase, barrel domain CH64_1604 PF00317 Ribonucleotide reductase, all-alpha domain CH64_1605 PF00268 Ribonucleotide reductase, small chain CH64_1606 PF00005 ABC transporter CH64_1606 PF00571 CBS domain CH64_1607 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1608 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH64_161 PF05231 MASE1 CH64_161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_161 PF07730 Histidine kinase CH64_1610 PF00929 Exonuclease CH64_1611 PF00075 RNase H CH64_1612 PF08241 Methyltransferase domain CH64_1613 PF00753 Metallo-beta-lactamase superfamily CH64_1613 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH64_1614 PF01476 LysM domain CH64_1614 PF01464 Transglycosylase SLT domain CH64_1615 PF03372 Endonuclease/Exonuclease/phosphatase family CH64_1616 PF07690 Major Facilitator Superfamily CH64_1617 PF03466 LysR substrate binding domain CH64_1617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1618 PF00248 Aldo/keto reductase family CH64_1619 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_1619 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_162 PF00072 Response regulator receiver domain CH64_162 PF00196 Bacterial regulatory proteins, luxR family CH64_1622 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_1622 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_1627 PF00535 Glycosyl transferase family 2 CH64_1629 PF13193 AMP-binding enzyme C-terminal domain CH64_1629 PF00550 Phosphopantetheine attachment site CH64_1629 PF00501 AMP-binding enzyme CH64_163 PF00072 Response regulator receiver domain CH64_163 PF12431 Transcriptional regulator CH64_1631 PF00550 Phosphopantetheine attachment site CH64_1632 PF00550 Phosphopantetheine attachment site CH64_164 PF00989 PAS fold CH64_164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_164 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH64_164 PF17203 Single cache domain 3 CH64_1643 PF09383 NIL domain CH64_1643 PF00005 ABC transporter CH64_1644 PF00528 Binding-protein-dependent transport system inner membrane component CH64_1645 PF03180 NLPA lipoprotein CH64_1646 PF16358 RcsF lipoprotein CH64_1647 PF18389 TrmO C-terminal domain CH64_1647 PF01980 tRNA-methyltransferase O CH64_1648 PF04073 Aminoacyl-tRNA editing domain CH64_1648 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH64_1648 PF03129 Anticodon binding domain CH64_1649 PF17185 NlpE C-terminal OB domain CH64_1649 PF04170 NlpE N-terminal domain CH64_165 PF08218 Citrate lyase ligase C-terminal domain CH64_1650 PF00472 RF-1 domain CH64_1651 PF07152 YaeQ protein CH64_1652 PF06786 Uncharacterised protein family (UPF0253) CH64_1653 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH64_1654 PF00034 Cytochrome c CH64_1655 PF09179 TilS substrate binding domain CH64_1655 PF11734 TilS substrate C-terminal domain CH64_1655 PF01171 PP-loop family CH64_1656 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH64_1657 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH64_1658 PF02811 PHP domain CH64_1658 PF14579 Helix-hairpin-helix motif CH64_1658 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH64_1658 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH64_1658 PF01336 OB-fold nucleic acid binding domain CH64_1659 PF01351 Ribonuclease HII CH64_166 PF06857 Malonate decarboxylase delta subunit (MdcD) CH64_1660 PF02684 Lipid-A-disaccharide synthetase CH64_1661 PF00132 Bacterial transferase hexapeptide (six repeats) CH64_1661 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH64_1662 PF07977 FabA-like domain CH64_1663 PF00132 Bacterial transferase hexapeptide (six repeats) CH64_1663 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH64_1664 PF03938 Outer membrane protein (OmpH-like) CH64_1665 PF01103 Surface antigen CH64_1665 PF07244 Surface antigen variable number repeat CH64_1666 PF17820 PDZ domain CH64_1666 PF02163 Peptidase family M50 CH64_1668 PF01255 Putative undecaprenyl diphosphate synthase CH64_1669 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH64_1669 PF13288 DXP reductoisomerase C-terminal domain CH64_1669 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH64_167 PF03328 HpcH/HpaI aldolase/citrate lyase family CH64_1670 PF01765 Ribosome recycling factor CH64_1671 PF00696 Amino acid kinase family CH64_1672 PF00889 Elongation factor TS CH64_1673 PF00318 Ribosomal protein S2 CH64_1674 PF00557 Metallopeptidase family M24 CH64_1675 PF01842 ACT domain CH64_1675 PF08335 GlnD PII-uridylyltransferase CH64_1675 PF01966 HD domain CH64_1675 PF01909 Nucleotidyltransferase domain CH64_1676 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH64_1676 PF14602 Hexapeptide repeat of succinyl-transferase CH64_1676 PF00132 Bacterial transferase hexapeptide (six repeats) CH64_1677 PF11944 Protein of unknown function (DUF3461) CH64_1678 PF00258 Flavodoxin CH64_1679 PF00849 RNA pseudouridylate synthase CH64_168 PF04223 Citrate lyase, alpha subunit (CitF) CH64_1680 PF04287 tRNA pseudouridine synthase C CH64_1681 PF07348 Syd protein (SUKH-2) CH64_1682 PF14489 QueF-like protein CH64_1682 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH64_1683 PF11892 Domain of unknown function (DUF3412) CH64_1683 PF03641 Possible lysine decarboxylase CH64_1683 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH64_1684 PF01367 5'-3' exonuclease, C-terminal SAM fold CH64_1684 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH64_1685 PF01728 FtsJ-like methyltransferase CH64_1685 PF18125 RlmM ferredoxin-like domain CH64_1686 PF04241 Protein of unknown function (DUF423) CH64_1687 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1687 PF03466 LysR substrate binding domain CH64_1688 PF06004 Bacterial protein of unknown function (DUF903) CH64_1689 PF00266 Aminotransferase class-V CH64_169 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CH64_1690 PF02657 Fe-S metabolism associated domain CH64_1691 PF00899 ThiF family CH64_1692 PF03562 MltA specific insert domain CH64_1692 PF06725 3D domain CH64_1696 PF11741 AMIN domain CH64_1696 PF01520 N-acetylmuramoyl-L-alanine amidase CH64_1697 PF00583 Acetyltransferase (GNAT) family CH64_1697 PF00696 Amino acid kinase family CH64_1698 PF13538 UvrD-like helicase C-terminal domain CH64_1699 PF13361 UvrD-like helicase C-terminal domain CH64_1699 PF00580 UvrD/REP helicase N-terminal domain CH64_1699 PF12705 PD-(D/E)XK nuclease superfamily CH64_17 PF12800 4Fe-4S binding domain CH64_17 PF13247 4Fe-4S dicluster domain CH64_170 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH64_1700 PF05193 Peptidase M16 inactive domain CH64_1700 PF16187 Middle or third domain of peptidase_M16 CH64_1700 PF00675 Insulinase (Peptidase family M16) CH64_1701 PF17946 RecC C-terminal domain CH64_1706 PF00303 Thymidylate synthase CH64_1707 PF01790 Prolipoprotein diacylglyceryl transferase CH64_1708 PF05524 PEP-utilising enzyme, N-terminal CH64_1708 PF00391 PEP-utilising enzyme, mobile domain CH64_1708 PF02896 PEP-utilising enzyme, TIM barrel domain CH64_1708 PF01590 GAF domain CH64_1709 PF00293 NUDIX domain CH64_171 PF00939 Sodium:sulfate symporter transmembrane region CH64_1710 PF02976 DNA mismatch repair enzyme MutH CH64_1711 PF03741 Integral membrane protein TerC family CH64_1712 PF00248 Aldo/keto reductase family CH64_1713 PF07690 Major Facilitator Superfamily CH64_1714 PF00501 AMP-binding enzyme CH64_1714 PF01553 Acyltransferase CH64_1714 PF13193 AMP-binding enzyme C-terminal domain CH64_1715 PF00384 Molybdopterin oxidoreductase CH64_1715 PF01568 Molydopterin dinucleotide binding domain CH64_1716 PF00356 Bacterial regulatory proteins, lacI family CH64_1717 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH64_1717 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH64_1718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1718 PF03466 LysR substrate binding domain CH64_1719 PF07690 Major Facilitator Superfamily CH64_172 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH64_1720 PF03466 LysR substrate binding domain CH64_1720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1725 PF01478 Type IV leader peptidase family CH64_1725 PF06750 Bacterial Peptidase A24 N-terminal domain CH64_1728 PF05134 Type II secretion system (T2SS), protein L CH64_1728 PF12693 GspL periplasmic domain CH64_1731 PF02501 Type II secretion system (T2SS), protein I CH64_1731 PF07963 Prokaryotic N-terminal methylation motif CH64_1732 PF07963 Prokaryotic N-terminal methylation motif CH64_1732 PF08334 Type II secretion system (T2SS), protein G CH64_1733 PF00482 Type II secretion system (T2SS), protein F CH64_1735 PF00263 Bacterial type II and III secretion system protein CH64_1735 PF03958 Bacterial type II/III secretion system short domain CH64_1738 PF00484 Carbonic anhydrase CH64_174 PF03480 Bacterial extracellular solute-binding protein, family 7 CH64_1740 PF00226 DnaJ domain CH64_1740 PF01556 DnaJ C terminal domain CH64_1741 PF00356 Bacterial regulatory proteins, lacI family CH64_1742 PF07690 Major Facilitator Superfamily CH64_1743 PF17137 Domain of unknown function (DUF5110) CH64_1743 PF13802 Galactose mutarotase-like CH64_1743 PF01055 Glycosyl hydrolases family 31 CH64_1743 PF16338 Domain of unknown function (DUF4968) CH64_1745 PF01037 Lrp/AsnC ligand binding domain CH64_1746 PF08448 PAS fold CH64_1746 PF00990 Diguanylate cyclase, GGDEF domain CH64_175 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH64_175 PF01648 4'-phosphopantetheinyl transferase superfamily CH64_1750 PF09134 Invasin, domain 3 CH64_1750 PF11924 Inverse autotransporter, beta-domain CH64_1750 PF02369 Bacterial Ig-like domain (group 1) CH64_1754 PF00196 Bacterial regulatory proteins, luxR family CH64_1754 PF00072 Response regulator receiver domain CH64_1755 PF00877 NlpC/P60 family CH64_1756 PF01527 Transposase CH64_1759 PF00577 Outer membrane usher protein CH64_1759 PF13954 PapC N-terminal domain CH64_1759 PF13953 PapC C-terminal domain CH64_1768 PF00152 tRNA synthetases class II (D, K and N) CH64_1768 PF01336 OB-fold nucleic acid binding domain CH64_1769 PF00472 RF-1 domain CH64_1769 PF03462 PCRF domain CH64_177 PF00392 Bacterial regulatory proteins, gntR family CH64_177 PF00155 Aminotransferase class I and II CH64_1770 PF02272 DHHA1 domain CH64_1770 PF17768 RecJ OB domain CH64_1770 PF01368 DHH family CH64_1772 PF13098 Thioredoxin-like domain CH64_1772 PF10411 Disulfide bond isomerase protein N-terminus CH64_1773 PF00589 Phage integrase family CH64_1773 PF02899 Phage integrase, N-terminal SAM-like domain CH64_1774 PF00258 Flavodoxin CH64_1775 PF07254 Membrane-bound toxin component of toxin-antitoxin system CH64_1776 PF03937 Flavinator of succinate dehydrogenase CH64_1777 PF01571 Aminomethyltransferase folate-binding domain CH64_1778 PF09134 Invasin, domain 3 CH64_1778 PF07979 Intimin C-type lectin domain CH64_1778 PF02369 Bacterial Ig-like domain (group 1) CH64_1778 PF11924 Inverse autotransporter, beta-domain CH64_1779 PF01474 Class-II DAHP synthetase family CH64_1783 PF03006 Haemolysin-III related CH64_1785 PF02347 Glycine cleavage system P-protein CH64_1786 PF01597 Glycine cleavage H-protein CH64_1787 PF01571 Aminomethyltransferase folate-binding domain CH64_1787 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH64_1788 PF01494 FAD binding domain CH64_1789 PF01494 FAD binding domain CH64_1790 PF00557 Metallopeptidase family M24 CH64_1790 PF05195 Aminopeptidase P, N-terminal domain CH64_1791 PF03695 Uncharacterised protein family (UPF0149) CH64_1792 PF05164 Cell division protein ZapA CH64_1793 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH64_1794 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH64_1794 PF01842 ACT domain CH64_1794 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH64_1795 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH64_1796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_1796 PF03466 LysR substrate binding domain CH64_1797 PF04402 Protein of unknown function (DUF541) CH64_1798 PF01810 LysE type translocator CH64_1799 PF05552 Conserved TM helix CH64_1799 PF00924 Mechanosensitive ion channel CH64_18 PF01750 Hydrogenase maturation protease CH64_180 PF06167 Glucose-regulated metallo-peptidase M90 CH64_1800 PF00102 Protein-tyrosine phosphatase CH64_1800 PF09013 YopH, N-terminal CH64_1801 PF01116 Fructose-bisphosphate aldolase class-II CH64_1802 PF00162 Phosphoglycerate kinase CH64_1803 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH64_1803 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH64_1804 PF02779 Transketolase, pyrimidine binding domain CH64_1804 PF02780 Transketolase, C-terminal domain CH64_1804 PF00456 Transketolase, thiamine diphosphate binding domain CH64_1805 PF01435 Peptidase family M48 CH64_1806 PF00355 Rieske [2Fe-2S] domain CH64_1807 PF17944 Arginine decarboxylase C-terminal helical extension CH64_1807 PF17810 Arginine decarboxylase helical bundle domain CH64_1807 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH64_1808 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH64_1808 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH64_1808 PF02772 S-adenosylmethionine synthetase, central domain CH64_1810 PF04143 Sulphur transport CH64_1812 PF17283 SprT-like zinc ribbon domain CH64_1812 PF10263 SprT-like family CH64_1813 PF04231 Endonuclease I CH64_1814 PF04452 RNA methyltransferase CH64_1815 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH64_1815 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH64_1817 PF02622 Uncharacterized ACR, COG1678 CH64_1818 PF03652 Holliday junction resolvase CH64_1819 PF00795 Carbon-nitrogen hydrolase CH64_182 PF00483 Nucleotidyl transferase CH64_1820 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH64_1821 PF00437 Type II/IV secretion system protein CH64_1822 PF01168 Alanine racemase, N-terminal domain CH64_1823 PF03807 NADP oxidoreductase coenzyme F420-dependent CH64_1823 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH64_1824 PF02325 YGGT family CH64_1825 PF02594 Uncharacterised ACR, YggU family COG1872 CH64_1826 PF01725 Ham1 family CH64_1827 PF06969 HemN C-terminal domain CH64_1827 PF04055 Radical SAM superfamily CH64_1828 PF11101 Protein of unknown function (DUF2884) CH64_1829 PF04960 Glutaminase CH64_183 PF00328 Histidine phosphatase superfamily (branch 2) CH64_1830 PF04320 Protein with unknown function (DUF469) CH64_1831 PF02390 Putative methyltransferase CH64_1832 PF14815 NUDIX domain CH64_1832 PF00633 Helix-hairpin-helix motif CH64_1832 PF10576 Iron-sulfur binding domain of endonuclease III CH64_1832 PF00730 HhH-GPD superfamily base excision DNA repair protein CH64_1833 PF04362 Bacterial Fe(2+) trafficking CH64_1834 PF01464 Transglycosylase SLT domain CH64_1834 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH64_1835 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH64_1835 PF01276 Orn/Lys/Arg decarboxylase, major domain CH64_1835 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH64_1837 PF00589 Phage integrase family CH64_1837 PF13356 Arm DNA-binding domain CH64_1838 PF00589 Phage integrase family CH64_1838 PF13356 Arm DNA-binding domain CH64_184 PF14001 YdfZ protein CH64_1840 PF03797 Autotransporter beta-domain CH64_1841 PF00877 NlpC/P60 family CH64_1843 PF13610 DDE domain CH64_1849 PF05860 haemagglutination activity domain CH64_1849 PF13332 Hemagglutinin repeat CH64_1849 PF04829 Pre-toxin domain with VENN motif CH64_1849 PF13018 Extended Signal Peptide of Type V secretion system CH64_1852 PF13018 Extended Signal Peptide of Type V secretion system CH64_1852 PF13332 Hemagglutinin repeat CH64_1852 PF04829 Pre-toxin domain with VENN motif CH64_1852 PF05860 haemagglutination activity domain CH64_1853 PF05860 haemagglutination activity domain CH64_1853 PF13332 Hemagglutinin repeat CH64_1853 PF13018 Extended Signal Peptide of Type V secretion system CH64_1853 PF04829 Pre-toxin domain with VENN motif CH64_1856 PF14436 Bacterial EndoU nuclease CH64_1856 PF05594 Haemagluttinin repeat CH64_1856 PF13332 Hemagglutinin repeat CH64_1856 PF05860 haemagglutination activity domain CH64_1856 PF04829 Pre-toxin domain with VENN motif CH64_1858 PF04829 Pre-toxin domain with VENN motif CH64_1858 PF05860 haemagglutination activity domain CH64_1858 PF13332 Hemagglutinin repeat CH64_1858 PF13018 Extended Signal Peptide of Type V secretion system CH64_1859 PF07262 CDI immunity protein CH64_186 PF01037 Lrp/AsnC ligand binding domain CH64_1860 PF13332 Hemagglutinin repeat CH64_1860 PF04829 Pre-toxin domain with VENN motif CH64_1862 PF13018 Extended Signal Peptide of Type V secretion system CH64_1862 PF13332 Hemagglutinin repeat CH64_1862 PF05860 haemagglutination activity domain CH64_1862 PF04829 Pre-toxin domain with VENN motif CH64_1863 PF17287 POTRA domain CH64_1863 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH64_1863 PF08479 POTRA domain, ShlB-type CH64_1866 PF00205 Thiamine pyrophosphate enzyme, central domain CH64_1866 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH64_1866 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_1867 PF00171 Aldehyde dehydrogenase family CH64_1868 PF03447 Homoserine dehydrogenase, NAD binding domain CH64_1868 PF01958 Domain of unknown function DUF108 CH64_187 PF10777 Inner membrane protein YlaC CH64_1870 PF12697 Alpha/beta hydrolase family CH64_1872 PF07690 Major Facilitator Superfamily CH64_1873 PF14759 Reductase C-terminal CH64_1873 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_1875 PF09339 IclR helix-turn-helix domain CH64_1875 PF01614 Bacterial transcriptional regulator CH64_1877 PF00111 2Fe-2S iron-sulfur cluster binding domain CH64_1877 PF00355 Rieske [2Fe-2S] domain CH64_1879 PF00355 Rieske [2Fe-2S] domain CH64_188 PF14765 Polyketide synthase dehydratase CH64_188 PF00107 Zinc-binding dehydrogenase CH64_188 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_188 PF16197 Ketoacyl-synthetase C-terminal extension CH64_188 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_188 PF08659 KR domain CH64_188 PF00550 Phosphopantetheine attachment site CH64_188 PF08240 Alcohol dehydrogenase GroES-like domain CH64_188 PF00698 Acyl transferase domain CH64_1880 PF03797 Autotransporter beta-domain CH64_189 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH64_189 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH64_189 PF16353 Domain of unknown function(DUF4981) CH64_189 PF02929 Beta galactosidase small chain CH64_189 PF00703 Glycosyl hydrolases family 2 CH64_1892 PF04536 TPM domain CH64_19 PF07450 Formate hydrogenlyase maturation protein HycH CH64_190 PF00356 Bacterial regulatory proteins, lacI family CH64_1900 PF07724 AAA domain (Cdc48 subfamily) CH64_1900 PF00004 ATPase family associated with various cellular activities (AAA) CH64_1900 PF10431 C-terminal, D2-small domain, of ClpB protein CH64_1900 PF17871 AAA lid domain CH64_1907 PF01970 Tripartite tricarboxylate transporter TctA family CH64_191 PF00313 'Cold-shock' DNA-binding domain CH64_1910 PF00486 Transcriptional regulatory protein, C terminal CH64_1910 PF00072 Response regulator receiver domain CH64_1911 PF08521 Two-component sensor kinase N-terminal CH64_1911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_1911 PF00512 His Kinase A (phospho-acceptor) domain CH64_1912 PF07274 Protein of unknown function (DUF1440) CH64_1913 PF00356 Bacterial regulatory proteins, lacI family CH64_1918 PF04632 Fusaric acid resistance protein family CH64_1919 PF00529 HlyD membrane-fusion protein of T1SS CH64_1919 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_192 PF10781 Dextransucrase DSRB CH64_1923 PF00557 Metallopeptidase family M24 CH64_1924 PF00005 ABC transporter CH64_1925 PF01032 FecCD transport family CH64_1926 PF01032 FecCD transport family CH64_1927 PF01497 Periplasmic binding protein CH64_1929 PF00083 Sugar (and other) transporter CH64_1929 PF07690 Major Facilitator Superfamily CH64_193 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_193 PF02203 Tar ligand binding domain homologue CH64_193 PF00672 HAMP domain CH64_1930 PF00356 Bacterial regulatory proteins, lacI family CH64_1931 PF01156 Inosine-uridine preferring nucleoside hydrolase CH64_1932 PF02690 Na+/Pi-cotransporter CH64_1933 PF03797 Autotransporter beta-domain CH64_1936 PF00873 AcrB/AcrD/AcrF family CH64_1937 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_1937 PF00529 HlyD membrane-fusion protein of T1SS CH64_1938 PF00990 Diguanylate cyclase, GGDEF domain CH64_1938 PF00563 EAL domain CH64_1938 PF08447 PAS fold CH64_1938 PF08448 PAS fold CH64_1939 PF02110 Hydroxyethylthiazole kinase family CH64_194 PF02308 MgtC family CH64_1941 PF01300 Telomere recombination CH64_1941 PF07503 HypF finger CH64_1941 PF00708 Acylphosphatase CH64_1941 PF17788 HypF Kae1-like domain CH64_1942 PF02769 AIR synthase related protein, C-terminal domain CH64_1942 PF00586 AIR synthase related protein, N-terminal domain CH64_1943 PF01924 Hydrogenase formation hypA family CH64_1944 PF01455 HupF/HypC family CH64_1945 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH64_1946 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH64_1947 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CH64_1948 PF01750 Hydrogenase maturation protease CH64_1949 PF00374 Nickel-dependent hydrogenase CH64_195 PF00690 Cation transporter/ATPase, N-terminus CH64_195 PF00689 Cation transporting ATPase, C-terminus CH64_1950 PF03916 Polysulphide reductase, NrfD CH64_1951 PF13247 4Fe-4S dicluster domain CH64_1952 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH64_1952 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CH64_1953 PF05433 Glycine zipper 2TM domain CH64_1954 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH64_1954 PF00691 OmpA family CH64_1955 PF01618 MotA/TolQ/ExbB proton channel family CH64_1956 PF04545 Sigma-70, region 4 CH64_1956 PF04542 Sigma-70 region 2 CH64_196 PF16884 N-terminal domain of oxidoreductase CH64_196 PF00107 Zinc-binding dehydrogenase CH64_1961 PF07195 Flagellar hook-associated protein 2 C-terminus CH64_1961 PF02465 Flagellar hook-associated protein 2 N-terminus CH64_1961 PF07196 Flagellin hook IN motif CH64_1962 PF00669 Bacterial flagellin N-terminal helical region CH64_1962 PF00700 Bacterial flagellin C-terminal helical region CH64_1963 PF00700 Bacterial flagellin C-terminal helical region CH64_1963 PF00669 Bacterial flagellin N-terminal helical region CH64_1964 PF00700 Bacterial flagellin C-terminal helical region CH64_1964 PF00669 Bacterial flagellin N-terminal helical region CH64_1968 PF00669 Bacterial flagellin N-terminal helical region CH64_197 PF00582 Universal stress protein family CH64_1971 PF02119 Flagellar P-ring protein CH64_1972 PF02107 Flagellar L-ring protein CH64_1973 PF00460 Flagella basal body rod protein CH64_1973 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_1974 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_1974 PF00460 Flagella basal body rod protein CH64_1975 PF00460 Flagella basal body rod protein CH64_1975 PF07559 Flagellar basal body protein FlaE CH64_1975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_1976 PF03963 Flagellar hook capping protein - N-terminal region CH64_1976 PF13860 FlgD Ig-like domain CH64_1976 PF13861 FlgD Tudor-like domain CH64_1977 PF00460 Flagella basal body rod protein CH64_1977 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_1983 PF18269 T3SS EscN ATPase C-terminal domain CH64_1983 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH64_1986 PF08345 Flagellar M-ring protein C-terminal CH64_1986 PF01514 Secretory protein of YscJ/FliF family CH64_1987 PF02049 Flagellar hook-basal body complex protein FliE CH64_1988 PF00072 Response regulator receiver domain CH64_1988 PF02954 Bacterial regulatory protein, Fis family CH64_1988 PF00158 Sigma-54 interaction domain CH64_199 PF05247 Flagellar transcriptional activator (FlhD) CH64_1990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH64_1991 PF00813 FliP family CH64_1992 PF01313 Bacterial export proteins, family 3 CH64_1993 PF01311 Bacterial export proteins, family 1 CH64_1994 PF01312 FlhB HrpN YscU SpaS Family CH64_1995 PF00771 FHIPEP family CH64_1997 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_1997 PF02203 Tar ligand binding domain homologue CH64_1997 PF00672 HAMP domain CH64_1998 PF01497 Periplasmic binding protein CH64_1999 PF01032 FecCD transport family CH64_20 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH64_200 PF05280 Flagellar transcriptional activator (FlhC) CH64_2000 PF01032 FecCD transport family CH64_2001 PF00005 ABC transporter CH64_2002 PF00756 Putative esterase CH64_2002 PF11806 Domain of unknown function (DUF3327) CH64_2006 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_2006 PF00529 HlyD membrane-fusion protein of T1SS CH64_2007 PF00873 AcrB/AcrD/AcrF family CH64_201 PF01618 MotA/TolQ/ExbB proton channel family CH64_2012 PF13629 Pilus formation protein N terminal region CH64_2012 PF00263 Bacterial type II and III secretion system protein CH64_2012 PF04972 BON domain CH64_2015 PF00437 Type II/IV secretion system protein CH64_202 PF00691 OmpA family CH64_202 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH64_2022 PF02472 Biopolymer transport protein ExbD/TolR CH64_2023 PF01618 MotA/TolQ/ExbB proton channel family CH64_2024 PF01053 Cys/Met metabolism PLP-dependent enzyme CH64_2025 PF09335 SNARE associated Golgi protein CH64_2026 PF06719 AraC-type transcriptional regulator N-terminus CH64_2026 PF12833 Helix-turn-helix domain CH64_2027 PF00465 Iron-containing alcohol dehydrogenase CH64_2028 PF00248 Aldo/keto reductase family CH64_2029 PF11842 Domain of unknown function (DUF3362) CH64_2029 PF04055 Radical SAM superfamily CH64_2029 PF08497 Radical SAM N-terminal CH64_203 PF01627 Hpt domain CH64_203 PF01584 CheW-like domain CH64_203 PF02895 Signal transducing histidine kinase, homodimeric domain CH64_203 PF09078 CheY binding CH64_203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2030 PF07732 Multicopper oxidase CH64_2030 PF07731 Multicopper oxidase CH64_2031 PF01553 Acyltransferase CH64_2032 PF00521 DNA gyrase/topoisomerase IV, subunit A CH64_2032 PF03989 DNA gyrase C-terminal domain, beta-propeller CH64_2033 PF02525 Flavodoxin-like fold CH64_2034 PF03992 Antibiotic biosynthesis monooxygenase CH64_2035 PF03466 LysR substrate binding domain CH64_2035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2036 PF00986 DNA gyrase B subunit, carboxyl terminus CH64_2036 PF00204 DNA gyrase B CH64_2036 PF01751 Toprim domain CH64_2036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2037 PF05728 Uncharacterised protein family (UPF0227) CH64_2038 PF00149 Calcineurin-like phosphoesterase CH64_2039 PF06853 Protein of unknown function (DUF1249) CH64_204 PF01584 CheW-like domain CH64_2040 PF00293 NUDIX domain CH64_2042 PF02321 Outer membrane efflux protein CH64_2043 PF06693 Protein of unknown function (DUF1190) CH64_2044 PF03738 Glutathionylspermidine synthase preATP-grasp CH64_2045 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH64_2046 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH64_2047 PF04380 Membrane fusogenic activity CH64_2048 PF13520 Amino acid permease CH64_2049 PF01467 Cytidylyltransferase-like CH64_2049 PF00294 pfkB family carbohydrate kinase CH64_205 PF00672 HAMP domain CH64_205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_205 PF02203 Tar ligand binding domain homologue CH64_2050 PF03710 Glutamate-ammonia ligase adenylyltransferase CH64_2050 PF08335 GlnD PII-uridylyltransferase CH64_2051 PF01928 CYTH domain CH64_2052 PF08239 Bacterial SH3 domain CH64_2053 PF01966 HD domain CH64_2053 PF01743 Poly A polymerase head domain CH64_2053 PF12627 Probable RNA and SrmB- binding site of polymerase A CH64_2054 PF02673 Bacitracin resistance protein BacA CH64_2055 PF02152 Dihydroneopterin aldolase CH64_2056 PF02660 Glycerol-3-phosphate acyltransferase CH64_2057 PF00814 Glycoprotease family CH64_2058 PF01165 Ribosomal protein S21 CH64_2059 PF08278 DNA primase DnaG DnaB-binding CH64_2059 PF08275 DNA primase catalytic core, N-terminal domain CH64_2059 PF01807 CHC2 zinc finger CH64_2059 PF10410 DnaB-helicase binding domain of primase CH64_206 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_206 PF02203 Tar ligand binding domain homologue CH64_206 PF00672 HAMP domain CH64_2060 PF04542 Sigma-70 region 2 CH64_2060 PF03979 Sigma-70 factor, region 1.1 CH64_2060 PF04546 Sigma-70, non-essential region CH64_2060 PF04539 Sigma-70 region 3 CH64_2060 PF04545 Sigma-70, region 4 CH64_2060 PF00140 Sigma-70 factor, region 1.2 CH64_2063 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH64_2064 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CH64_2065 PF04002 RadC-like JAB domain CH64_207 PF01739 CheR methyltransferase, SAM binding domain CH64_207 PF03705 CheR methyltransferase, all-alpha domain CH64_2070 PF00899 ThiF family CH64_2070 PF14461 Prokaryotic E2 family B CH64_2077 PF13280 WYL domain CH64_2077 PF08220 DeoR-like helix-turn-helix domain CH64_2078 PF06067 Domain of unknown function (DUF932) CH64_2079 PF01926 50S ribosome-binding GTPase CH64_208 PF00072 Response regulator receiver domain CH64_208 PF01339 CheB methylesterase CH64_2084 PF01555 DNA methylase CH64_2084 PF18273 Type III R-M EcoP15I C-terminal domain CH64_2085 PF08774 VRR-NUC domain CH64_2085 PF04851 Type III restriction enzyme, res subunit CH64_2087 PF07510 Protein of unknown function (DUF1524) CH64_209 PF00072 Response regulator receiver domain CH64_2091 PF02811 PHP domain CH64_2094 PF03981 Ubiquinol-cytochrome C chaperone CH64_2094 PF13099 Domain of unknown function (DUF3944) CH64_2097 PF13148 Protein of unknown function (DUF3987) CH64_21 PF12838 4Fe-4S dicluster domain CH64_210 PF04344 Chemotaxis phosphatase, CheZ CH64_2100 PF02661 Fic/DOC family CH64_2106 PF00199 Catalase CH64_2106 PF06628 Catalase-related immune-responsive CH64_2109 PF16363 GDP-mannose 4,6 dehydratase CH64_2111 PF13439 Glycosyltransferase Family 4 CH64_2111 PF00534 Glycosyl transferases group 1 CH64_2112 PF00534 Glycosyl transferases group 1 CH64_2112 PF13439 Glycosyltransferase Family 4 CH64_2117 PF10531 SLBB domain CH64_2117 PF02563 Polysaccharide biosynthesis/export protein CH64_2117 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CH64_2119 PF02397 Bacterial sugar transferase CH64_212 PF01312 FlhB HrpN YscU SpaS Family CH64_2120 PF01418 Helix-turn-helix domain, rpiR family CH64_2120 PF01380 SIS domain CH64_2121 PF13580 SIS domain CH64_2122 PF02378 Phosphotransferase system, EIIC CH64_2122 PF00367 phosphotransferase system, EIIB CH64_2123 PF04960 Glutaminase CH64_2124 PF13520 Amino acid permease CH64_2125 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH64_2126 PF03729 Short repeat of unknown function (DUF308) CH64_2127 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH64_2127 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_2128 PF05175 Methyltransferase small domain CH64_213 PF00771 FHIPEP family CH64_2130 PF01863 Protein of unknown function DUF45 CH64_2131 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH64_2132 PF03741 Integral membrane protein TerC family CH64_2133 PF00375 Sodium:dicarboxylate symporter family CH64_2134 PF10688 Bacterial inner membrane protein CH64_2135 PF08666 SAF domain CH64_2135 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH64_2136 PF08125 Mannitol dehydrogenase C-terminal domain CH64_2136 PF01232 Mannitol dehydrogenase Rossmann domain CH64_2137 PF02614 Glucuronate isomerase CH64_2138 PF07690 Major Facilitator Superfamily CH64_2139 PF00392 Bacterial regulatory proteins, gntR family CH64_2139 PF07729 FCD domain CH64_214 PF06366 Flagellar protein FlhE CH64_2141 PF09335 SNARE associated Golgi protein CH64_2142 PF13721 SecD export protein N-terminal TM region CH64_2144 PF05957 Bacterial protein of unknown function (DUF883) CH64_2145 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH64_2146 PF13997 YqjK-like protein CH64_2147 PF07681 DoxX CH64_2148 PF13409 Glutathione S-transferase, N-terminal domain CH64_2149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2149 PF03466 LysR substrate binding domain CH64_215 PF05130 FlgN protein CH64_2150 PF17954 Quercetinase C-terminal cupin domain CH64_2150 PF02678 Pirin CH64_2151 PF00107 Zinc-binding dehydrogenase CH64_2151 PF08240 Alcohol dehydrogenase GroES-like domain CH64_2152 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_2152 PF00529 HlyD membrane-fusion protein of T1SS CH64_2155 PF12802 MarR family CH64_2156 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2157 PF00005 ABC transporter CH64_2158 PF09084 NMT1/THI5 like CH64_2159 PF00296 Luciferase-like monooxygenase CH64_216 PF04316 Anti-sigma-28 factor, FlgM CH64_2160 PF03797 Autotransporter beta-domain CH64_2161 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH64_2162 PF04348 LppC putative lipoprotein CH64_2163 PF02021 Uncharacterised protein family UPF0102 CH64_2164 PF13580 SIS domain CH64_2165 PF04972 BON domain CH64_2166 PF00912 Transglycosylase CH64_2168 PF00512 His Kinase A (phospho-acceptor) domain CH64_2168 PF01627 Hpt domain CH64_2168 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH64_2168 PF00072 Response regulator receiver domain CH64_2168 PF00989 PAS fold CH64_2168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2169 PF16199 Radical_SAM C-terminal domain CH64_2169 PF04055 Radical SAM superfamily CH64_217 PF13144 Chaperone for flagella basal body P-ring formation CH64_217 PF17656 FlgA N-terminal domain CH64_2170 PF01493 GXGXG motif CH64_2170 PF04898 Glutamate synthase central domain CH64_2170 PF01645 Conserved region in glutamate synthase CH64_2170 PF00310 Glutamine amidotransferases class-II CH64_2171 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_2171 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH64_2173 PF04386 Stringent starvation protein B CH64_2174 PF02798 Glutathione S-transferase, N-terminal domain CH64_2174 PF00043 Glutathione S-transferase, C-terminal domain CH64_2175 PF00380 Ribosomal protein S9/S16 CH64_2176 PF00572 Ribosomal protein L13 CH64_2177 PF03969 AFG1-like ATPase CH64_2178 PF06295 Protein of unknown function (DUF1043) CH64_2179 PF00595 PDZ domain CH64_2179 PF13180 PDZ domain CH64_218 PF00460 Flagella basal body rod protein CH64_2180 PF13180 PDZ domain CH64_2181 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH64_2182 PF01722 BolA-like protein CH64_2183 PF13466 STAS domain CH64_2184 PF05494 MlaC protein CH64_2185 PF02470 MlaD protein CH64_2186 PF02405 Permease MlaE CH64_2187 PF00005 ABC transporter CH64_2188 PF01699 Sodium/calcium exchanger protein CH64_2189 PF00571 CBS domain CH64_2189 PF01380 SIS domain CH64_219 PF00460 Flagella basal body rod protein CH64_219 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_2191 PF06835 Lipopolysaccharide-assembly, LptC-related CH64_2192 PF03968 OstA-like protein CH64_2193 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH64_2193 PF00005 ABC transporter CH64_2194 PF04552 Sigma-54, DNA binding domain CH64_2194 PF04963 Sigma-54 factor, core binding domain CH64_2194 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH64_2195 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH64_2196 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH64_2197 PF03668 P-loop ATPase protein family CH64_2198 PF00381 PTS HPr component phosphorylation site CH64_22 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH64_22 PF00374 Nickel-dependent hydrogenase CH64_22 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH64_220 PF03963 Flagellar hook capping protein - N-terminal region CH64_220 PF13860 FlgD Ig-like domain CH64_220 PF13861 FlgD Tudor-like domain CH64_2200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH64_2200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH64_2201 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH64_2201 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH64_2202 PF01042 Endoribonuclease L-PSP CH64_2203 PF11941 Domain of unknown function (DUF3459) CH64_2203 PF00128 Alpha amylase, catalytic domain CH64_2204 PF02378 Phosphotransferase system, EIIC CH64_2204 PF00367 phosphotransferase system, EIIB CH64_2205 PF00356 Bacterial regulatory proteins, lacI family CH64_2206 PF00690 Cation transporter/ATPase, N-terminus CH64_2206 PF00689 Cation transporting ATPase, C-terminus CH64_2207 PF08279 HTH domain CH64_2207 PF00874 PRD domain CH64_2207 PF05043 Mga helix-turn-helix domain CH64_2207 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH64_2208 PF07071 KDGP aldolase CH64_2209 PF03841 L-seryl-tRNA selenium transferase CH64_221 PF00460 Flagella basal body rod protein CH64_221 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_221 PF07559 Flagellar basal body protein FlaE CH64_2210 PF01979 Amidohydrolase family CH64_2216 PF14760 Rnk N-terminus CH64_2216 PF01272 Transcription elongation factor, GreA/GreB, C-term CH64_2217 PF07361 Cytochrome b562 CH64_2218 PF01523 Putative modulator of DNA gyrase CH64_2219 PF04751 Protein of unknown function (DUF615) CH64_222 PF00460 Flagella basal body rod protein CH64_222 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_2220 PF01337 Barstar (barnase inhibitor) CH64_2222 PF00171 Aldehyde dehydrogenase family CH64_2223 PF04632 Fusaric acid resistance protein family CH64_2224 PF13533 Biotin-lipoyl like CH64_2225 PF07869 Protein of unknown function (DUF1656) CH64_2226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2226 PF03466 LysR substrate binding domain CH64_2227 PF01523 Putative modulator of DNA gyrase CH64_2228 PF00795 Carbon-nitrogen hydrolase CH64_2229 PF13502 AsmA-like C-terminal region CH64_2229 PF13116 Protein of unknown function CH64_223 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_223 PF00460 Flagella basal body rod protein CH64_2230 PF10150 Ribonuclease E/G family CH64_2230 PF00575 S1 RNA binding domain CH64_2231 PF02545 Maf-like protein CH64_2232 PF04093 rod shape-determining protein MreD CH64_2233 PF04085 rod shape-determining protein MreC CH64_2235 PF17157 Gammaproteobacterial periplasmic sensor domain CH64_2235 PF00990 Diguanylate cyclase, GGDEF domain CH64_2235 PF00563 EAL domain CH64_2236 PF08240 Alcohol dehydrogenase GroES-like domain CH64_2236 PF00107 Zinc-binding dehydrogenase CH64_2237 PF00174 Oxidoreductase molybdopterin binding domain CH64_2238 PF01794 Ferric reductase like transmembrane component CH64_2239 PF01220 Dehydroquinase class II CH64_224 PF02107 Flagellar L-ring protein CH64_2240 PF00364 Biotin-requiring enzyme CH64_2241 PF02785 Biotin carboxylase C-terminal domain CH64_2241 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH64_2241 PF00289 Biotin carboxylase, N-terminal domain CH64_2242 PF06196 Protein of unknown function (DUF997) CH64_2243 PF00474 Sodium:solute symporter family CH64_2245 PF01207 Dihydrouridine synthase (Dus) CH64_2246 PF02954 Bacterial regulatory protein, Fis family CH64_2247 PF00990 Diguanylate cyclase, GGDEF domain CH64_2247 PF00072 Response regulator receiver domain CH64_2248 PF05433 Glycine zipper 2TM domain CH64_2249 PF00313 'Cold-shock' DNA-binding domain CH64_225 PF02119 Flagellar P-ring protein CH64_2250 PF00313 'Cold-shock' DNA-binding domain CH64_2251 PF00313 'Cold-shock' DNA-binding domain CH64_2252 PF03279 Bacterial lipid A biosynthesis acyltransferase CH64_2255 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_2256 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2257 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2258 PF00005 ABC transporter CH64_226 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH64_226 PF10135 Rod binding protein CH64_2260 PF00999 Sodium/hydrogen exchanger family CH64_2261 PF00860 Permease family CH64_2263 PF00436 Single-strand binding protein family CH64_2264 PF17755 UvrA DNA-binding domain CH64_2264 PF17760 UvrA interaction domain CH64_2264 PF00005 ABC transporter CH64_2265 PF04237 YjbR CH64_2266 PF00155 Aminotransferase class I and II CH64_2267 PF00842 Alanine racemase, C-terminal domain CH64_2267 PF01168 Alanine racemase, N-terminal domain CH64_2268 PF03796 DnaB-like helicase C terminal domain CH64_2268 PF00772 DnaB-like helicase N terminal domain CH64_2269 PF00107 Zinc-binding dehydrogenase CH64_2269 PF08240 Alcohol dehydrogenase GroES-like domain CH64_227 PF00460 Flagella basal body rod protein CH64_227 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH64_2270 PF09583 Phage shock protein G (Phageshock_PspG) CH64_2271 PF01207 Dihydrouridine synthase (Dus) CH64_2272 PF01757 Acyltransferase family CH64_2273 PF01475 Ferric uptake regulator family CH64_2274 PF05532 CsbD-like CH64_2275 PF01726 LexA DNA binding domain CH64_2275 PF00717 Peptidase S24-like CH64_2276 PF01219 Prokaryotic diacylglycerol kinase CH64_2277 PF01553 Acyltransferase CH64_2278 PF01040 UbiA prenyltransferase family CH64_2279 PF04345 Chorismate lyase CH64_228 PF00669 Bacterial flagellin N-terminal helical region CH64_2281 PF07148 Maltose operon periplasmic protein precursor (MalM) CH64_2282 PF02264 LamB porin CH64_2283 PF17912 MalK OB fold domain CH64_2283 PF00005 ABC transporter CH64_2285 PF01547 Bacterial extracellular solute-binding protein CH64_2286 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2286 PF14785 Maltose transport system permease protein MalF P2 domain CH64_2287 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2288 PF06146 Phosphate-starvation-inducible E CH64_2289 PF00342 Phosphoglucose isomerase CH64_229 PF01311 Bacterial export proteins, family 1 CH64_2290 PF01842 ACT domain CH64_2290 PF00696 Amino acid kinase family CH64_2291 PF02607 B12 binding domain CH64_2291 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH64_2291 PF02574 Homocysteine S-methyltransferase CH64_2291 PF00809 Pterin binding enzyme CH64_2291 PF02310 B12 binding domain CH64_2292 PF09339 IclR helix-turn-helix domain CH64_2292 PF01614 Bacterial transcriptional regulator CH64_2293 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH64_2294 PF00463 Isocitrate lyase family CH64_2295 PF01274 Malate synthase CH64_2296 PF04204 Homoserine O-succinyltransferase CH64_23 PF00361 Proton-conducting membrane transporter CH64_23 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH64_230 PF01313 Bacterial export proteins, family 3 CH64_2304 PF00132 Bacterial transferase hexapeptide (six repeats) CH64_2305 PF08501 Shikimate dehydrogenase substrate binding domain CH64_2305 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH64_2305 PF01488 Shikimate / quinate 5-dehydrogenase CH64_2306 PF01300 Telomere recombination CH64_2307 PF01396 Topoisomerase DNA binding C4 zinc finger CH64_2308 PF04361 Protein of unknown function (DUF494) CH64_2309 PF17782 DprA winged helix domain CH64_2309 PF02481 DNA recombination-mediator protein A CH64_231 PF00813 FliP family CH64_2310 PF01327 Polypeptide deformylase CH64_2311 PF00551 Formyl transferase CH64_2311 PF02911 Formyl transferase, C-terminal domain CH64_2312 PF01029 NusB family CH64_2312 PF01189 16S rRNA methyltransferase RsmB/F CH64_2313 PF02254 TrkA-N domain CH64_2313 PF02080 TrkA-C domain CH64_2314 PF01741 Large-conductance mechanosensitive channel, MscL CH64_2315 PF03889 Alternative ribosome-rescue factor A CH64_2316 PF13411 MerR HTH family regulatory protein CH64_2317 PF09350 Domain of unknown function (DUF1992) CH64_2318 PF01196 Ribosomal protein L17 CH64_2319 PF01000 RNA polymerase Rpb3/RpoA insert domain CH64_2319 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH64_2319 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH64_232 PF04347 Flagellar biosynthesis protein, FliO CH64_2320 PF00163 Ribosomal protein S4/S9 N-terminal domain CH64_2320 PF01479 S4 domain CH64_2321 PF00411 Ribosomal protein S11 CH64_2322 PF00416 Ribosomal protein S13/S18 CH64_2323 PF00444 Ribosomal protein L36 CH64_2324 PF00344 SecY translocase CH64_2325 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH64_2326 PF00327 Ribosomal protein L30p/L7e CH64_2327 PF00333 Ribosomal protein S5, N-terminal domain CH64_2327 PF03719 Ribosomal protein S5, C-terminal domain CH64_2328 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH64_2329 PF00347 Ribosomal protein L6 CH64_233 PF16973 Flagellar motor switch protein FliN N-terminal CH64_233 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH64_2330 PF00410 Ribosomal protein S8 CH64_2331 PF00253 Ribosomal protein S14p/S29e CH64_2332 PF00281 Ribosomal protein L5 CH64_2332 PF00673 ribosomal L5P family C-terminus CH64_2333 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH64_2333 PF00467 KOW motif CH64_2334 PF00238 Ribosomal protein L14p/L23e CH64_2335 PF00366 Ribosomal protein S17 CH64_2336 PF00831 Ribosomal L29 protein CH64_2337 PF00252 Ribosomal protein L16p/L10e CH64_2338 PF00189 Ribosomal protein S3, C-terminal domain CH64_2338 PF07650 KH domain CH64_2339 PF00237 Ribosomal protein L22p/L17e CH64_234 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH64_234 PF02154 Flagellar motor switch protein FliM CH64_2340 PF00203 Ribosomal protein S19 CH64_2341 PF00181 Ribosomal Proteins L2, RNA binding domain CH64_2341 PF03947 Ribosomal Proteins L2, C-terminal domain CH64_2342 PF00276 Ribosomal protein L23 CH64_2343 PF00573 Ribosomal protein L4/L1 family CH64_2344 PF00297 Ribosomal protein L3 CH64_2345 PF00338 Ribosomal protein S10p/S20e CH64_2346 PF00210 Ferritin-like domain CH64_2347 PF04324 BFD-like [2Fe-2S] binding domain CH64_2348 PF00009 Elongation factor Tu GTP binding domain CH64_2348 PF03143 Elongation factor Tu C-terminal domain CH64_2348 PF03144 Elongation factor Tu domain 2 CH64_2349 PF00679 Elongation factor G C-terminus CH64_2349 PF14492 Elongation Factor G, domain II CH64_2349 PF00009 Elongation factor Tu GTP binding domain CH64_2349 PF03764 Elongation factor G, domain IV CH64_2349 PF03144 Elongation factor Tu domain 2 CH64_235 PF03748 Flagellar basal body-associated protein FliL CH64_2350 PF00177 Ribosomal protein S7p/S5e CH64_2351 PF00164 Ribosomal protein S12/S23 CH64_2352 PF04077 DsrH like protein CH64_2353 PF02635 DsrE/DsrF-like family CH64_2354 PF02635 DsrE/DsrF-like family CH64_2355 PF13309 HTH domain CH64_2355 PF08348 YheO-like PAS domain CH64_2356 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH64_2356 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH64_2357 PF04102 SlyX CH64_2358 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH64_2359 PF09526 Probable metal-binding protein (DUF2387) CH64_236 PF02120 Flagellar hook-length control protein FliK CH64_2360 PF00999 Sodium/hydrogen exchanger family CH64_2360 PF02254 TrkA-N domain CH64_2361 PF02525 Flavodoxin-like fold CH64_2362 PF00005 ABC transporter CH64_2362 PF12848 ABC transporter CH64_2363 PF00535 Glycosyl transferase family 2 CH64_2365 PF02567 Phenazine biosynthesis-like protein CH64_2366 PF01810 LysE type translocator CH64_2367 PF00561 alpha/beta hydrolase fold CH64_2368 PF06794 Uncharacterised protein family (UPF0270) CH64_2369 PF00485 Phosphoribulokinase / Uridine kinase family CH64_237 PF02050 Flagellar FliJ protein CH64_2370 PF02566 OsmC-like protein CH64_2371 PF13545 Crp-like helix-turn-helix domain CH64_2371 PF00027 Cyclic nucleotide-binding domain CH64_2372 PF12805 FUSC-like inner membrane protein yccS CH64_2373 PF00202 Aminotransferase class-III CH64_2374 PF00117 Glutamine amidotransferase class-I CH64_2375 PF05872 Bacterial protein of unknown function (DUF853) CH64_2376 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH64_2377 PF02056 Family 4 glycosyl hydrolase CH64_2377 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH64_2378 PF00356 Bacterial regulatory proteins, lacI family CH64_2379 PF07690 Major Facilitator Superfamily CH64_238 PF18269 T3SS EscN ATPase C-terminal domain CH64_238 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH64_2380 PF07969 Amidohydrolase family CH64_2381 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_2381 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH64_2381 PF04324 BFD-like [2Fe-2S] binding domain CH64_2381 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH64_2381 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH64_2382 PF13806 Rieske-like [2Fe-2S] domain CH64_2383 PF01226 Formate/nitrite transporter CH64_2384 PF14824 Sirohaem biosynthesis protein central CH64_2384 PF10414 Sirohaem synthase dimerisation region CH64_2384 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH64_2385 PF00579 tRNA synthetases class I (W and Y) CH64_2386 PF13419 Haloacid dehalogenase-like hydrolase CH64_2387 PF00834 Ribulose-phosphate 3 epimerase family CH64_2388 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH64_2389 PF05036 Sporulation related domain CH64_239 PF02108 Flagellar assembly protein FliH CH64_2390 PF01761 3-dehydroquinate synthase CH64_2391 PF01202 Shikimate kinase CH64_2392 PF00263 Bacterial type II and III secretion system protein CH64_2392 PF03958 Bacterial type II/III secretion system short domain CH64_2398 PF00905 Penicillin binding protein transpeptidase domain CH64_2398 PF00912 Transglycosylase CH64_2398 PF17092 Penicillin-binding protein OB-like domain CH64_2399 PF00293 NUDIX domain CH64_24 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH64_240 PF14842 FliG N-terminal domain CH64_240 PF14841 FliG middle domain CH64_240 PF01706 FliG C-terminal domain CH64_2400 PF07095 Intracellular growth attenuator protein IgaA CH64_2401 PF13419 Haloacid dehalogenase-like hydrolase CH64_2402 PF01479 S4 domain CH64_2403 PF01430 Hsp33 protein CH64_2404 PF01293 Phosphoenolpyruvate carboxykinase CH64_2405 PF00512 His Kinase A (phospho-acceptor) domain CH64_2405 PF00672 HAMP domain CH64_2405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2406 PF00072 Response regulator receiver domain CH64_2406 PF00486 Transcriptional regulatory protein, C terminal CH64_2407 PF03449 Transcription elongation factor, N-terminal CH64_2407 PF01272 Transcription elongation factor, GreA/GreB, C-term CH64_2408 PF00575 S1 RNA binding domain CH64_2408 PF16921 Tex protein YqgF-like domain CH64_2408 PF17674 HHH domain CH64_2408 PF09371 Tex-like protein N-terminal domain CH64_2409 PF04023 FeoA domain CH64_241 PF08345 Flagellar M-ring protein C-terminal CH64_241 PF01514 Secretory protein of YscJ/FliF family CH64_2410 PF02421 Ferrous iron transport protein B CH64_2410 PF07670 Nucleoside recognition CH64_2410 PF17910 FeoB cytosolic helical domain CH64_2410 PF07664 Ferrous iron transport protein B C terminus CH64_2411 PF09012 FeoC like transcriptional regulator CH64_2412 PF00561 alpha/beta hydrolase fold CH64_2413 PF00156 Phosphoribosyl transferase domain CH64_2414 PF01106 NifU-like domain CH64_2414 PF01521 Iron-sulphur cluster biosynthesis CH64_2415 PF02446 4-alpha-glucanotransferase CH64_2416 PF00343 Carbohydrate phosphorylase CH64_2417 PF00196 Bacterial regulatory proteins, luxR family CH64_2417 PF17874 MalT-like TPR region CH64_2419 PF00581 Rhodanese-like domain CH64_242 PF02049 Flagellar hook-basal body complex protein FliE CH64_2420 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH64_2420 PF01694 Rhomboid family CH64_2421 PF00455 DeoR C terminal sensor domain CH64_2421 PF08220 DeoR-like helix-turn-helix domain CH64_2422 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH64_2422 PF01266 FAD dependent oxidoreductase CH64_2423 PF00343 Carbohydrate phosphorylase CH64_2424 PF00534 Glycosyl transferases group 1 CH64_2424 PF08323 Starch synthase catalytic domain CH64_2425 PF00483 Nucleotidyl transferase CH64_2426 PF18390 Glycogen debranching enzyme C-terminal domain CH64_2426 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH64_2426 PF00128 Alpha amylase, catalytic domain CH64_2427 PF00128 Alpha amylase, catalytic domain CH64_2427 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH64_2427 PF02806 Alpha amylase, C-terminal all-beta domain CH64_2428 PF07694 5TMR of 5TMR-LYT CH64_2428 PF06580 Histidine kinase CH64_2429 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_2429 PF00529 HlyD membrane-fusion protein of T1SS CH64_2431 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH64_2431 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH64_2432 PF01914 MarC family integral membrane protein CH64_2433 PF01202 Shikimate kinase CH64_2434 PF02447 GntP family permease CH64_2435 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH64_2435 PF00356 Bacterial regulatory proteins, lacI family CH64_2436 PF02678 Pirin CH64_2436 PF17954 Quercetinase C-terminal cupin domain CH64_2437 PF00583 Acetyltransferase (GNAT) family CH64_2438 PF01261 Xylose isomerase-like TIM barrel CH64_2439 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH64_2439 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH64_2440 PF00205 Thiamine pyrophosphate enzyme, central domain CH64_2440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH64_2440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_2441 PF00294 pfkB family carbohydrate kinase CH64_2443 PF04962 KduI/IolB family CH64_2444 PF00171 Aldehyde dehydrogenase family CH64_2446 PF07690 Major Facilitator Superfamily CH64_2447 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2447 PF03466 LysR substrate binding domain CH64_2449 PF03466 LysR substrate binding domain CH64_2449 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_245 PF01966 HD domain CH64_2450 PF00144 Beta-lactamase CH64_2453 PF01384 Phosphate transporter family CH64_2454 PF10625 Universal stress protein B (UspB) CH64_2456 PF00582 Universal stress protein family CH64_2457 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH64_2457 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH64_2458 PF08548 Peptidase M10 serralysin C terminal CH64_2458 PF00413 Matrixin CH64_2458 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH64_2459 PF04445 Putative SAM-dependent methyltransferase CH64_246 PF12833 Helix-turn-helix domain CH64_2460 PF01432 Peptidase family M3 CH64_2462 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH64_2463 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH64_2463 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_2464 PF03631 Virulence factor BrkB CH64_2465 PF02611 CDP-diacylglycerol pyrophosphatase CH64_2466 PF05170 AsmA family CH64_2467 PF00563 EAL domain CH64_2468 PF01361 Tautomerase enzyme CH64_2469 PF00294 pfkB family carbohydrate kinase CH64_247 PF05400 Flagellar protein FliT CH64_2470 PF05193 Peptidase M16 inactive domain CH64_2470 PF00675 Insulinase (Peptidase family M16) CH64_2471 PF00375 Sodium:dicarboxylate symporter family CH64_2472 PF06917 Periplasmic pectate lyase CH64_2473 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH64_2474 PF00672 HAMP domain CH64_2474 PF00990 Diguanylate cyclase, GGDEF domain CH64_2474 PF00563 EAL domain CH64_2474 PF17154 Gammaproteobacterial periplasmic sensor domain CH64_2475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH64_2475 PF00005 ABC transporter CH64_2476 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH64_2476 PF00005 ABC transporter CH64_2477 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2477 PF12911 N-terminal TM domain of oligopeptide transport permease C CH64_2478 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2479 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_248 PF02561 Flagellar protein FliS CH64_2481 PF13332 Hemagglutinin repeat CH64_2481 PF05860 haemagglutination activity domain CH64_2481 PF04829 Pre-toxin domain with VENN motif CH64_2481 PF13018 Extended Signal Peptide of Type V secretion system CH64_2482 PF17287 POTRA domain CH64_2482 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH64_2482 PF08479 POTRA domain, ShlB-type CH64_2483 PF04829 Pre-toxin domain with VENN motif CH64_2483 PF13018 Extended Signal Peptide of Type V secretion system CH64_2483 PF13332 Hemagglutinin repeat CH64_2483 PF05860 haemagglutination activity domain CH64_2485 PF07690 Major Facilitator Superfamily CH64_2486 PF05231 MASE1 CH64_2486 PF07730 Histidine kinase CH64_2486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2487 PF00072 Response regulator receiver domain CH64_2487 PF00196 Bacterial regulatory proteins, luxR family CH64_2488 PF08019 Phosphoethanolamine transferase EptA/EptB CH64_2488 PF00884 Sulfatase CH64_2489 PF02566 OsmC-like protein CH64_249 PF07196 Flagellin hook IN motif CH64_249 PF02465 Flagellar hook-associated protein 2 N-terminus CH64_249 PF07195 Flagellar hook-associated protein 2 C-terminus CH64_2490 PF01047 MarR family CH64_2491 PF12146 Serine aminopeptidase, S33 CH64_2492 PF00324 Amino acid permease CH64_2493 PF00221 Aromatic amino acid lyase CH64_2494 PF17391 Urocanase N-terminal domain CH64_2494 PF17392 Urocanase C-terminal domain CH64_2494 PF01175 Urocanase Rossmann-like domain CH64_2495 PF04391 Protein of unknown function (DUF533) CH64_2497 PF12833 Helix-turn-helix domain CH64_2498 PF02653 Branched-chain amino acid transport system / permease component CH64_2499 PF00005 ABC transporter CH64_25 PF00361 Proton-conducting membrane transporter CH64_25 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH64_250 PF00669 Bacterial flagellin N-terminal helical region CH64_250 PF00700 Bacterial flagellin C-terminal helical region CH64_250 PF08884 Flagellin D3 domain CH64_2500 PF13407 Periplasmic binding protein domain CH64_2502 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH64_2502 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH64_2503 PF00857 Isochorismatase family CH64_2504 PF01757 Acyltransferase family CH64_2506 PF07690 Major Facilitator Superfamily CH64_2508 PF03144 Elongation factor Tu domain 2 CH64_2508 PF09106 Elongation factor SelB, winged helix CH64_2508 PF09107 Elongation factor SelB, winged helix CH64_2508 PF00009 Elongation factor Tu GTP binding domain CH64_2509 PF03841 L-seryl-tRNA selenium transferase CH64_2509 PF12390 Selenocysteine synthase N terminal CH64_251 PF00669 Bacterial flagellin N-terminal helical region CH64_251 PF08884 Flagellin D3 domain CH64_251 PF00700 Bacterial flagellin C-terminal helical region CH64_2510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH64_2510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH64_2510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH64_2511 PF04216 Protein involved in formate dehydrogenase formation CH64_2512 PF01292 Prokaryotic cytochrome b561 CH64_2513 PF13247 4Fe-4S dicluster domain CH64_2513 PF09163 Formate dehydrogenase N, transmembrane CH64_2514 PF01568 Molydopterin dinucleotide binding domain CH64_2514 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH64_2514 PF00384 Molybdopterin oxidoreductase CH64_2515 PF01568 Molydopterin dinucleotide binding domain CH64_2515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH64_2515 PF00384 Molybdopterin oxidoreductase CH64_2516 PF02634 FdhD/NarQ family CH64_2518 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH64_2518 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH64_2519 PF00672 HAMP domain CH64_2519 PF02203 Tar ligand binding domain homologue CH64_2519 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_252 PF00700 Bacterial flagellin C-terminal helical region CH64_252 PF00669 Bacterial flagellin N-terminal helical region CH64_252 PF08884 Flagellin D3 domain CH64_2520 PF03475 3-alpha domain CH64_2520 PF03473 MOSC domain CH64_2521 PF10928 Protein of unknown function (DUF2810) CH64_2522 PF00392 Bacterial regulatory proteins, gntR family CH64_2522 PF00155 Aminotransferase class I and II CH64_2524 PF05068 Mannitol repressor CH64_2525 PF08125 Mannitol dehydrogenase C-terminal domain CH64_2525 PF01232 Mannitol dehydrogenase Rossmann domain CH64_2526 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH64_2526 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH64_2526 PF02378 Phosphotransferase system, EIIC CH64_2527 PF11254 Protein of unknown function (DUF3053) CH64_2528 PF02092 Glycyl-tRNA synthetase beta subunit CH64_2528 PF05746 DALR anticodon binding domain CH64_2529 PF02091 Glycyl-tRNA synthetase alpha subunit CH64_2530 PF03352 Methyladenine glycosylase CH64_2534 PF07690 Major Facilitator Superfamily CH64_2535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH64_2535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH64_2536 PF00128 Alpha amylase, catalytic domain CH64_2537 PF00155 Aminotransferase class I and II CH64_2538 PF02080 TrkA-C domain CH64_2538 PF06826 Predicted Permease Membrane Region CH64_2539 PF00011 Hsp20/alpha crystallin family CH64_254 PF04542 Sigma-70 region 2 CH64_254 PF04539 Sigma-70 region 3 CH64_254 PF04545 Sigma-70, region 4 CH64_2540 PF00011 Hsp20/alpha crystallin family CH64_2541 PF07119 Protein of unknown function (DUF1375) CH64_2542 PF07676 WD40-like Beta Propeller Repeat CH64_2542 PF12566 Protein of unknown function (DUF3748) CH64_2543 PF08348 YheO-like PAS domain CH64_2543 PF13309 HTH domain CH64_2544 PF13291 ACT domain CH64_2544 PF00291 Pyridoxal-phosphate dependent enzyme CH64_2545 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH64_2547 PF00204 DNA gyrase B CH64_2547 PF00986 DNA gyrase B subunit, carboxyl terminus CH64_2547 PF18053 DNA gyrase B subunit insert domain CH64_2547 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2547 PF01751 Toprim domain CH64_2548 PF02463 RecF/RecN/SMC N terminal domain CH64_2549 PF02768 DNA polymerase III beta subunit, C-terminal domain CH64_2549 PF00712 DNA polymerase III beta subunit, N-terminal domain CH64_2549 PF02767 DNA polymerase III beta subunit, central domain CH64_255 PF02899 Phage integrase, N-terminal SAM-like domain CH64_2550 PF08299 Bacterial dnaA protein helix-turn-helix CH64_2550 PF00308 Bacterial dnaA protein CH64_2550 PF11638 DnaA N-terminal domain CH64_2551 PF00468 Ribosomal protein L34 CH64_2552 PF00825 Ribonuclease P CH64_2553 PF01809 Putative membrane protein insertion efficiency factor CH64_2554 PF14849 YidC periplasmic domain CH64_2554 PF02096 60Kd inner membrane protein CH64_2555 PF01926 50S ribosome-binding GTPase CH64_2555 PF10396 GTP-binding protein TrmE N-terminus CH64_2555 PF12631 MnmE helical domain CH64_2556 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH64_2556 PF07055 Enoyl reductase FAD binding domain CH64_2556 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH64_2558 PF00005 ABC transporter CH64_2558 PF09383 NIL domain CH64_2559 PF00528 Binding-protein-dependent transport system inner membrane component CH64_256 PF00291 Pyridoxal-phosphate dependent enzyme CH64_2560 PF02203 Tar ligand binding domain homologue CH64_2560 PF00672 HAMP domain CH64_2560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_2561 PF03358 NADPH-dependent FMN reductase CH64_2562 PF00512 His Kinase A (phospho-acceptor) domain CH64_2562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2563 PF00196 Bacterial regulatory proteins, luxR family CH64_2563 PF00072 Response regulator receiver domain CH64_2565 PF00860 Permease family CH64_2566 PF13419 Haloacid dehalogenase-like hydrolase CH64_2567 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2568 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2569 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_2571 PF07075 Protein of unknown function (DUF1343) CH64_2573 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH64_2573 PF00933 Glycosyl hydrolase family 3 N terminal domain CH64_2574 PF01895 PhoU domain CH64_2575 PF00005 ABC transporter CH64_2576 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2577 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2578 PF12849 PBP superfamily domain CH64_2580 PF01380 SIS domain CH64_2581 PF00132 Bacterial transferase hexapeptide (six repeats) CH64_2581 PF12804 MobA-like NTP transferase domain CH64_2582 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH64_2582 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH64_2583 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH64_2583 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH64_2584 PF00231 ATP synthase CH64_2585 PF00306 ATP synthase alpha/beta chain, C terminal domain CH64_2585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH64_2585 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH64_2586 PF00213 ATP synthase delta (OSCP) subunit CH64_2587 PF00430 ATP synthase B/B' CF(0) CH64_2588 PF00137 ATP synthase subunit C CH64_2589 PF00119 ATP synthase A chain CH64_2590 PF03899 ATP synthase I chain CH64_2591 PF02527 rRNA small subunit methyltransferase G CH64_2592 PF13932 GidA associated domain CH64_2592 PF01134 Glucose inhibited division protein A CH64_2593 PF00258 Flavodoxin CH64_2594 PF01037 Lrp/AsnC ligand binding domain CH64_2595 PF03590 Aspartate-ammonia ligase CH64_2597 PF05762 VWA domain containing CoxE-like protein CH64_2598 PF12592 Protein of unknown function (DUF3763) CH64_2598 PF17868 AAA lid domain CH64_2598 PF07728 AAA domain (dynein-related subfamily) CH64_2599 PF02705 K+ potassium transporter CH64_26 PF00146 NADH dehydrogenase CH64_2600 PF05025 RbsD / FucU transport protein family CH64_2601 PF00005 ABC transporter CH64_2602 PF02653 Branched-chain amino acid transport system / permease component CH64_2603 PF13407 Periplasmic binding protein domain CH64_2604 PF00294 pfkB family carbohydrate kinase CH64_2605 PF07690 Major Facilitator Superfamily CH64_2606 PF00356 Bacterial regulatory proteins, lacI family CH64_2607 PF00392 Bacterial regulatory proteins, gntR family CH64_2607 PF07729 FCD domain CH64_2612 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH64_2613 PF12804 MobA-like NTP transferase domain CH64_2614 PF06288 Protein of unknown function (DUF1040) CH64_2615 PF01636 Phosphotransferase enzyme family CH64_2616 PF01323 DSBA-like thioredoxin domain CH64_2617 PF00476 DNA polymerase family A CH64_2617 PF01612 3'-5' exonuclease CH64_2617 PF01367 5'-3' exonuclease, C-terminal SAM fold CH64_2617 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH64_2618 PF01926 50S ribosome-binding GTPase CH64_2619 PF04220 Der GTPase activator (YihI) CH64_262 PF00171 Aldehyde dehydrogenase family CH64_262 PF01619 Proline dehydrogenase CH64_262 PF14850 DNA-binding domain of Proline dehydrogenase CH64_262 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH64_2620 PF06969 HemN C-terminal domain CH64_2620 PF04055 Radical SAM superfamily CH64_2621 PF00072 Response regulator receiver domain CH64_2621 PF00158 Sigma-54 interaction domain CH64_2621 PF02954 Bacterial regulatory protein, Fis family CH64_2622 PF00989 PAS fold CH64_2622 PF00512 His Kinase A (phospho-acceptor) domain CH64_2622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2623 PF00120 Glutamine synthetase, catalytic domain CH64_2623 PF03951 Glutamine synthetase, beta-Grasp domain CH64_2625 PF13419 Haloacid dehalogenase-like hydrolase CH64_2626 PF03631 Virulence factor BrkB CH64_2627 PF02580 D-Tyr-tRNA(Tyr) deacylase CH64_2628 PF09500 Putative thioesterase (yiiD_Cterm) CH64_2628 PF00583 Acetyltransferase (GNAT) family CH64_2629 PF13693 Winged helix-turn-helix DNA-binding CH64_263 PF00474 Sodium:solute symporter family CH64_2630 PF00072 Response regulator receiver domain CH64_2630 PF00196 Bacterial regulatory proteins, luxR family CH64_2632 PF05170 AsmA family CH64_2633 PF00860 Permease family CH64_2634 PF03616 Sodium/glutamate symporter CH64_2635 PF00270 DEAD/DEAH box helicase CH64_2635 PF00271 Helicase conserved C-terminal domain CH64_2635 PF17191 RecG wedge domain CH64_2636 PF12105 SpoU, rRNA methylase, C-terminal CH64_2636 PF00588 SpoU rRNA Methylase family CH64_2637 PF13291 ACT domain CH64_2637 PF02824 TGS domain CH64_2637 PF04607 Region found in RelA / SpoT proteins CH64_2638 PF01192 RNA polymerase Rpb6 CH64_2639 PF00625 Guanylate kinase CH64_264 PF03239 Iron permease FTR1 family CH64_2640 PF01653 NAD-dependent DNA ligase adenylation domain CH64_2640 PF03120 NAD-dependent DNA ligase OB-fold domain CH64_2641 PF03458 UPF0126 domain CH64_2642 PF00378 Enoyl-CoA hydratase/isomerase CH64_2643 PF13426 PAS domain CH64_2643 PF00563 EAL domain CH64_2643 PF00990 Diguanylate cyclase, GGDEF domain CH64_2644 PF03755 YicC-like family, N-terminal region CH64_2644 PF08340 Domain of unknown function (DUF1732) CH64_2645 PF01138 3' exoribonuclease family, domain 1 CH64_2645 PF03725 3' exoribonuclease family, domain 2 CH64_2646 PF00156 Phosphoribosyl transferase domain CH64_2647 PF00440 Bacterial regulatory proteins, tetR family CH64_2648 PF00692 dUTPase CH64_2649 PF02441 Flavoprotein CH64_2649 PF04127 DNA / pantothenate metabolism flavoprotein CH64_265 PF09375 Imelysin CH64_265 PF13473 Cupredoxin-like domain CH64_2650 PF04002 RadC-like JAB domain CH64_2651 PF00830 Ribosomal L28 family CH64_2652 PF00471 Ribosomal protein L33 CH64_2653 PF06827 Zinc finger found in FPG and IleRS CH64_2653 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH64_2653 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH64_2654 PF01467 Cytidylyltransferase-like CH64_2655 PF00535 Glycosyl transferase family 2 CH64_2656 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH64_2657 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH64_2658 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH64_2659 PF01370 NAD dependent epimerase/dehydratase family CH64_266 PF04261 Dyp-type peroxidase family CH64_2660 PF00155 Aminotransferase class I and II CH64_2661 PF08240 Alcohol dehydrogenase GroES-like domain CH64_2661 PF00107 Zinc-binding dehydrogenase CH64_2662 PF04748 Divergent polysaccharide deacetylase CH64_2663 PF01551 Peptidase family M23 CH64_2664 PF01676 Metalloenzyme superfamily CH64_2664 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH64_2665 PF00581 Rhodanese-like domain CH64_2666 PF00462 Glutaredoxin CH64_2667 PF02556 Preprotein translocase subunit SecB CH64_2668 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH64_2668 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH64_2669 PF06426 Serine acetyltransferase, N-terminal CH64_2669 PF00132 Bacterial transferase hexapeptide (six repeats) CH64_267 PF03358 NADPH-dependent FMN reductase CH64_2670 PF00588 SpoU rRNA Methylase family CH64_2671 PF02805 Metal binding domain of Ada CH64_2671 PF12833 Helix-turn-helix domain CH64_2671 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH64_2671 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH64_2672 PF00512 His Kinase A (phospho-acceptor) domain CH64_2672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2672 PF00672 HAMP domain CH64_2672 PF16527 Two-component sensor protein CpxA, periplasmic domain CH64_2673 PF00486 Transcriptional regulatory protein, C terminal CH64_2673 PF00072 Response regulator receiver domain CH64_2674 PF07813 LTXXQ motif family protein CH64_2675 PF00589 Phage integrase family CH64_2675 PF02899 Phage integrase, N-terminal SAM-like domain CH64_2677 PF16916 Dimerisation domain of Zinc Transporter CH64_2677 PF01545 Cation efflux family CH64_2678 PF00365 Phosphofructokinase CH64_268 PF01344 Kelch motif CH64_2681 PF00121 Triosephosphate isomerase CH64_2682 PF07305 Protein of unknown function (DUF1454) CH64_2683 PF05656 Protein of unknown function (DUF805) CH64_2684 PF00970 Oxidoreductase FAD-binding domain CH64_2684 PF00175 Oxidoreductase NAD-binding domain CH64_2685 PF07690 Major Facilitator Superfamily CH64_2686 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH64_2687 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH64_2687 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH64_2688 PF00230 Major intrinsic protein CH64_2689 PF06005 Cell division protein ZapB CH64_269 PF00324 Amino acid permease CH64_2690 PF03737 Aldolase/RraA CH64_2691 PF01040 UbiA prenyltransferase family CH64_2692 PF07724 AAA domain (Cdc48 subfamily) CH64_2692 PF00004 ATPase family associated with various cellular activities (AAA) CH64_2692 PF10431 C-terminal, D2-small domain, of ClpB protein CH64_2693 PF00227 Proteasome subunit CH64_2694 PF05036 Sporulation related domain CH64_2695 PF00356 Bacterial regulatory proteins, lacI family CH64_2696 PF18074 Primosomal protein N C-terminal domain CH64_2696 PF00270 DEAD/DEAH box helicase CH64_2696 PF00271 Helicase conserved C-terminal domain CH64_2696 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH64_2696 PF17764 3′ DNA-binding domain (3′BD) CH64_2697 PF01197 Ribosomal protein L31 CH64_2698 PF15645 Dermonecrotoxin of the Papain-like fold CH64_2699 PF01340 Met Apo-repressor, MetJ CH64_27 PF00361 Proton-conducting membrane transporter CH64_2700 PF01053 Cys/Met metabolism PLP-dependent enzyme CH64_2701 PF00742 Homoserine dehydrogenase CH64_2701 PF03447 Homoserine dehydrogenase, NAD binding domain CH64_2701 PF00696 Amino acid kinase family CH64_2702 PF02219 Methylenetetrahydrofolate reductase CH64_2703 PF00083 Sugar (and other) transporter CH64_2704 PF00311 Phosphoenolpyruvate carboxylase CH64_2706 PF07687 Peptidase dimerisation domain CH64_2706 PF01546 Peptidase family M20/M25/M40 CH64_2707 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH64_2707 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH64_2708 PF00696 Amino acid kinase family CH64_2709 PF00206 Lyase CH64_2709 PF14698 Argininosuccinate lyase C-terminal CH64_271 PF00849 RNA pseudouridylate synthase CH64_271 PF01479 S4 domain CH64_2710 PF07715 TonB-dependent Receptor Plug Domain CH64_2710 PF00593 TonB dependent receptor CH64_2713 PF00005 ABC transporter CH64_2713 PF00664 ABC transporter transmembrane region CH64_2714 PF00529 HlyD membrane-fusion protein of T1SS CH64_2716 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_2716 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH64_2717 PF00462 Glutaredoxin CH64_2717 PF08534 Redoxin CH64_2718 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH64_2718 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_2719 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2719 PF03466 LysR substrate binding domain CH64_2720 PF00440 Bacterial regulatory proteins, tetR family CH64_2721 PF07226 Protein of unknown function (DUF1422) CH64_2722 PF05958 tRNA (Uracil-5-)-methyltransferase CH64_2723 PF00593 TonB dependent receptor CH64_2723 PF07715 TonB-dependent Receptor Plug Domain CH64_2724 PF01177 Asp/Glu/Hydantoin racemase CH64_2732 PF13407 Periplasmic binding protein domain CH64_2733 PF00005 ABC transporter CH64_2734 PF02653 Branched-chain amino acid transport system / permease component CH64_2735 PF03466 LysR substrate binding domain CH64_2735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2736 PF02653 Branched-chain amino acid transport system / permease component CH64_2737 PF04219 Protein of unknown function, DUF CH64_2738 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH64_2738 PF01078 Magnesium chelatase, subunit ChlI CH64_2739 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH64_2739 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_2739 PF00205 Thiamine pyrophosphate enzyme, central domain CH64_274 PF02806 Alpha amylase, C-terminal all-beta domain CH64_274 PF00128 Alpha amylase, catalytic domain CH64_2741 PF01063 Amino-transferase class IV CH64_2742 PF00920 Dehydratase family CH64_2743 PF00291 Pyridoxal-phosphate dependent enzyme CH64_2743 PF00585 C-terminal regulatory domain of Threonine dehydratase CH64_2744 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2744 PF03466 LysR substrate binding domain CH64_2745 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH64_2745 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH64_2746 PF02753 Pili assembly chaperone PapD, C-terminal domain CH64_2746 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH64_2748 PF13953 PapC C-terminal domain CH64_2748 PF00577 Outer membrane usher protein CH64_2748 PF13954 PapC N-terminal domain CH64_2749 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH64_2749 PF02753 Pili assembly chaperone PapD, C-terminal domain CH64_275 PF00672 HAMP domain CH64_275 PF02203 Tar ligand binding domain homologue CH64_275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_2752 PF13361 UvrD-like helicase C-terminal domain CH64_2752 PF00580 UvrD/REP helicase N-terminal domain CH64_2753 PF00295 Glycosyl hydrolases family 28 CH64_2754 PF02541 Ppx/GppA phosphatase family CH64_2755 PF00270 DEAD/DEAH box helicase CH64_2755 PF00271 Helicase conserved C-terminal domain CH64_2756 PF00085 Thioredoxin CH64_2757 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH64_2757 PF07497 Rho termination factor, RNA-binding domain CH64_2757 PF07498 Rho termination factor, N-terminal domain CH64_2758 PF00953 Glycosyl transferase family 4 CH64_2759 PF02706 Chain length determinant protein CH64_2760 PF02350 UDP-N-acetylglucosamine 2-epimerase CH64_2761 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH64_2761 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH64_2761 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH64_2762 PF16363 GDP-mannose 4,6 dehydratase CH64_2763 PF00483 Nucleotidyl transferase CH64_2765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH64_2766 PF01943 Polysaccharide biosynthesis protein CH64_2767 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH64_2768 PF06899 WzyE protein, O-antigen assembly polymerase CH64_2769 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH64_277 PF06942 GlpM protein CH64_2770 PF00324 Amino acid permease CH64_2775 PF07219 HemY protein N-terminus CH64_2775 PF07719 Tetratricopeptide repeat CH64_2776 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH64_2777 PF02602 Uroporphyrinogen-III synthase HemD CH64_2778 PF03900 Porphobilinogen deaminase, C-terminal domain CH64_2778 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH64_2779 PF01295 Adenylate cyclase, class-I CH64_2779 PF12633 Adenylate cyclase NT domain CH64_278 PF10769 Protein of unknown function (DUF2594) CH64_2781 PF01491 Frataxin-like domain CH64_2782 PF13627 Prokaryotic lipoprotein-attachment site CH64_2783 PF01678 Diaminopimelate epimerase CH64_2784 PF04340 Protein of unknown function, DUF484 CH64_2785 PF02899 Phage integrase, N-terminal SAM-like domain CH64_2785 PF00589 Phage integrase family CH64_2786 PF13419 Haloacid dehalogenase-like hydrolase CH64_2787 PF00580 UvrD/REP helicase N-terminal domain CH64_2787 PF13361 UvrD-like helicase C-terminal domain CH64_2790 PF09370 Phosphoenolpyruvate hydrolase-like CH64_2792 PF01544 CorA-like Mg2+ transporter protein CH64_2793 PF00892 EamA-like transporter family CH64_2794 PF03061 Thioesterase superfamily CH64_2795 PF02253 Phospholipase A1 CH64_2796 PF00271 Helicase conserved C-terminal domain CH64_2796 PF00270 DEAD/DEAH box helicase CH64_2796 PF00570 HRDC domain CH64_2796 PF16124 RecQ zinc-binding CH64_2796 PF09382 RQC domain CH64_2797 PF01810 LysE type translocator CH64_2798 PF01810 LysE type translocator CH64_2799 PF12146 Serine aminopeptidase, S33 CH64_28 PF00037 4Fe-4S binding domain CH64_28 PF12798 4Fe-4S binding domain CH64_280 PF00072 Response regulator receiver domain CH64_280 PF00196 Bacterial regulatory proteins, luxR family CH64_2801 PF03009 Glycerophosphoryl diester phosphodiesterase family CH64_2802 PF07690 Major Facilitator Superfamily CH64_2803 PF01266 FAD dependent oxidoreductase CH64_2803 PF04324 BFD-like [2Fe-2S] binding domain CH64_2804 PF00890 FAD binding domain CH64_2805 PF02754 Cysteine-rich domain CH64_2805 PF13183 4Fe-4S dicluster domain CH64_2806 PF08786 DcrB CH64_2807 PF02592 Putative vitamin uptake transporter CH64_2808 PF01206 Sulfurtransferase TusA CH64_2809 PF00403 Heavy-metal-associated domain CH64_281 PF01541 GIY-YIG catalytic domain CH64_281 PF02151 UvrB/uvrC motif CH64_281 PF08459 UvrC Helix-hairpin-helix N-terminal CH64_2810 PF07947 YhhN family CH64_2813 PF06611 Protein of unknown function (DUF1145) CH64_2815 PF02881 SRP54-type protein, helical bundle domain CH64_2815 PF02881 SRP54-type protein, helical bundle domain CH64_2815 PF00448 SRP54-type protein, GTPase domain CH64_2815 PF00448 SRP54-type protein, GTPase domain CH64_2816 PF00005 ABC transporter CH64_2817 PF18075 FtsX extracellular domain CH64_2817 PF02687 FtsX-like permease family CH64_2818 PF04545 Sigma-70, region 4 CH64_2818 PF04542 Sigma-70 region 2 CH64_2818 PF00140 Sigma-70 factor, region 1.2 CH64_2819 PF12568 Acetyltransferase (GNAT) domain, PanZ CH64_282 PF01066 CDP-alcohol phosphatidyltransferase CH64_2821 PF13458 Periplasmic binding protein CH64_2822 PF02653 Branched-chain amino acid transport system / permease component CH64_2823 PF11862 Domain of unknown function (DUF3382) CH64_2823 PF02653 Branched-chain amino acid transport system / permease component CH64_2824 PF00005 ABC transporter CH64_2824 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH64_2825 PF00005 ABC transporter CH64_2832 PF13416 Bacterial extracellular solute-binding protein CH64_2833 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2834 PF00528 Binding-protein-dependent transport system inner membrane component CH64_2835 PF17912 MalK OB fold domain CH64_2835 PF00005 ABC transporter CH64_2836 PF03009 Glycerophosphoryl diester phosphodiesterase family CH64_2837 PF03547 Membrane transport protein CH64_2838 PF03466 LysR substrate binding domain CH64_2838 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2839 PF00892 EamA-like transporter family CH64_2840 PF01717 Cobalamin-independent synthase, Catalytic domain CH64_2840 PF08267 Cobalamin-independent synthase, N-terminal domain CH64_2841 PF01738 Dienelactone hydrolase family CH64_2842 PF01048 Phosphorylase superfamily CH64_2844 PF02554 Carbon starvation protein CstA CH64_2844 PF13722 5TM C-terminal transporter carbon starvation CstA CH64_2845 PF09335 SNARE associated Golgi protein CH64_2846 PF02646 RmuC family CH64_2847 PF01209 ubiE/COQ5 methyltransferase family CH64_2848 PF02036 SCP-2 sterol transfer family CH64_2849 PF03109 ABC1 family CH64_2850 PF02416 mttA/Hcf106 family CH64_2852 PF00902 Sec-independent protein translocase protein (TatC) CH64_2853 PF01026 TatD related DNase CH64_2854 PF00490 Delta-aminolevulinic acid dehydratase CH64_2855 PF02357 Transcription termination factor nusG CH64_2856 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH64_2857 PF00970 Oxidoreductase FAD-binding domain CH64_2857 PF00175 Oxidoreductase NAD-binding domain CH64_2858 PF00108 Thiolase, N-terminal domain CH64_2858 PF02803 Thiolase, C-terminal domain CH64_2859 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH64_2859 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH64_2859 PF00378 Enoyl-CoA hydratase/isomerase CH64_2860 PF00557 Metallopeptidase family M24 CH64_2861 PF01205 Uncharacterized protein family UPF0029 CH64_2861 PF09186 Domain of unknown function (DUF1949) CH64_2862 PF02386 Cation transport protein CH64_2863 PF12724 Flavodoxin domain CH64_2868 PF01565 FAD binding domain CH64_2868 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH64_2869 PF08279 HTH domain CH64_2869 PF02237 Biotin protein ligase C terminal domain CH64_2869 PF03099 Biotin/lipoate A/B protein ligase family CH64_2870 PF00485 Phosphoribulokinase / Uridine kinase family CH64_2871 PF13673 Acetyltransferase (GNAT) domain CH64_2877 PF00009 Elongation factor Tu GTP binding domain CH64_2877 PF03143 Elongation factor Tu C-terminal domain CH64_2877 PF03144 Elongation factor Tu domain 2 CH64_2878 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH64_2879 PF02357 Transcription termination factor nusG CH64_2879 PF00467 KOW motif CH64_288 PF04754 Putative transposase, YhgA-like CH64_2880 PF03946 Ribosomal protein L11, N-terminal domain CH64_2880 PF00298 Ribosomal protein L11, RNA binding domain CH64_2881 PF00687 Ribosomal protein L1p/L10e family CH64_2882 PF00466 Ribosomal protein L10 CH64_2883 PF16320 Ribosomal protein L7/L12 dimerisation domain CH64_2883 PF00542 Ribosomal protein L7/L12 C-terminal domain CH64_2884 PF04565 RNA polymerase Rpb2, domain 3 CH64_2884 PF00562 RNA polymerase Rpb2, domain 6 CH64_2884 PF04561 RNA polymerase Rpb2, domain 2 CH64_2884 PF04560 RNA polymerase Rpb2, domain 7 CH64_2884 PF10385 RNA polymerase beta subunit external 1 domain CH64_2884 PF04563 RNA polymerase beta subunit CH64_2885 PF00623 RNA polymerase Rpb1, domain 2 CH64_2885 PF04997 RNA polymerase Rpb1, domain 1 CH64_2885 PF04983 RNA polymerase Rpb1, domain 3 CH64_2885 PF05000 RNA polymerase Rpb1, domain 4 CH64_2885 PF04998 RNA polymerase Rpb1, domain 5 CH64_2886 PF04055 Radical SAM superfamily CH64_2886 PF06968 Biotin and Thiamin Synthesis associated domain CH64_2887 PF05690 Thiazole biosynthesis protein ThiG CH64_2888 PF02597 ThiS family CH64_2889 PF00899 ThiF family CH64_289 PF03797 Autotransporter beta-domain CH64_2890 PF02581 Thiamine monophosphate synthase CH64_2891 PF13667 ThiC-associated domain CH64_2891 PF01964 Radical SAM ThiC family CH64_2892 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH64_2893 PF09297 NADH pyrophosphatase zinc ribbon domain CH64_2893 PF00293 NUDIX domain CH64_2894 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH64_2895 PF04493 Endonuclease V CH64_2896 PF04222 Protein of unknown function (DUF416) CH64_2897 PF00216 Bacterial DNA-binding protein CH64_2898 PF07356 Protein of unknown function (DUF1481) CH64_2899 PF02844 Phosphoribosylglycinamide synthetase, N domain CH64_2899 PF02843 Phosphoribosylglycinamide synthetase, C domain CH64_2899 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH64_29 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH64_2900 PF01808 AICARFT/IMPCHase bienzyme CH64_2900 PF02142 MGS-like domain CH64_2906 PF00474 Sodium:solute symporter family CH64_2907 PF04341 Protein of unknown function, DUF485 CH64_2908 PF13193 AMP-binding enzyme C-terminal domain CH64_2908 PF00501 AMP-binding enzyme CH64_2908 PF16177 Acetyl-coenzyme A synthetase N-terminus CH64_2909 PF00375 Sodium:dicarboxylate symporter family CH64_2910 PF00196 Bacterial regulatory proteins, luxR family CH64_2910 PF00072 Response regulator receiver domain CH64_2911 PF00072 Response regulator receiver domain CH64_2911 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH64_2911 PF01627 Hpt domain CH64_2911 PF00512 His Kinase A (phospho-acceptor) domain CH64_2911 PF00672 HAMP domain CH64_2911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_2917 PF03433 EspA-like secreted protein CH64_2919 PF04888 Secretion system effector C (SseC) like family CH64_2920 PF05802 Enterobacterial EspB protein CH64_2924 PF14525 AraC-binding-like domain CH64_2924 PF12833 Helix-turn-helix domain CH64_2928 PF01514 Secretory protein of YscJ/FliF family CH64_2931 PF07201 HrpJ-like domain CH64_2933 PF00771 FHIPEP family CH64_2934 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH64_2934 PF18269 T3SS EscN ATPase C-terminal domain CH64_2938 PF00813 FliP family CH64_2939 PF01313 Bacterial export proteins, family 3 CH64_2940 PF01311 Bacterial export proteins, family 1 CH64_2941 PF01312 FlhB HrpN YscU SpaS Family CH64_2942 PF04143 Sulphur transport CH64_2943 PF01206 Sulfurtransferase TusA CH64_2944 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH64_2944 PF12795 Mechanosensitive ion channel porin domain CH64_2944 PF00924 Mechanosensitive ion channel CH64_2946 PF07715 TonB-dependent Receptor Plug Domain CH64_2946 PF00593 TonB dependent receptor CH64_2948 PF00155 Aminotransferase class I and II CH64_2948 PF00392 Bacterial regulatory proteins, gntR family CH64_2949 PF00005 ABC transporter CH64_2950 PF01032 FecCD transport family CH64_2951 PF01497 Periplasmic binding protein CH64_2952 PF05171 Haemin-degrading HemS.ChuX domain CH64_2953 PF00593 TonB dependent receptor CH64_2953 PF07715 TonB-dependent Receptor Plug Domain CH64_2954 PF10636 Hemin uptake protein hemP CH64_2956 PF06228 Haem utilisation ChuX/HutX CH64_2957 PF04055 Radical SAM superfamily CH64_2958 PF00206 Lyase CH64_2958 PF10415 Fumarase C C-terminus CH64_2959 PF00390 Malic enzyme, N-terminal domain CH64_2959 PF03949 Malic enzyme, NAD binding domain CH64_296 PF14765 Polyketide synthase dehydratase CH64_296 PF00698 Acyl transferase domain CH64_296 PF00550 Phosphopantetheine attachment site CH64_296 PF08659 KR domain CH64_296 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_296 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_296 PF16197 Ketoacyl-synthetase C-terminal extension CH64_296 PF08240 Alcohol dehydrogenase GroES-like domain CH64_2962 PF16363 GDP-mannose 4,6 dehydratase CH64_2964 PF00535 Glycosyl transferase family 2 CH64_2965 PF00483 Nucleotidyl transferase CH64_2969 PF13610 DDE domain CH64_297 PF00698 Acyl transferase domain CH64_297 PF14765 Polyketide synthase dehydratase CH64_297 PF00550 Phosphopantetheine attachment site CH64_297 PF08659 KR domain CH64_297 PF08240 Alcohol dehydrogenase GroES-like domain CH64_297 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_297 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_297 PF16197 Ketoacyl-synthetase C-terminal extension CH64_2971 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_2971 PF03466 LysR substrate binding domain CH64_2974 PF02595 Glycerate kinase family CH64_2975 PF02683 Cytochrome C biogenesis protein transmembrane region CH64_2975 PF11412 Disulphide bond corrector protein DsbC CH64_2976 PF03091 CutA1 divalent ion tolerance protein CH64_2977 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH64_2978 PF10415 Fumarase C C-terminus CH64_2978 PF00206 Lyase CH64_2979 PF04186 FxsA cytoplasmic membrane protein CH64_2980 PF00166 Chaperonin 10 Kd subunit CH64_2981 PF00118 TCP-1/cpn60 chaperonin family CH64_2982 PF13698 Domain of unknown function (DUF4156) CH64_2983 PF04055 Radical SAM superfamily CH64_2984 PF08207 Elongation factor P (EF-P) KOW-like domain CH64_2984 PF01132 Elongation factor P (EF-P) OB domain CH64_2984 PF09285 Elongation factor P, C-terminal CH64_2985 PF08085 Entericidin EcnA/B family CH64_2986 PF00893 Small Multidrug Resistance protein CH64_2987 PF08212 Lipocalin-like domain CH64_2988 PF02313 Fumarate reductase subunit D CH64_2989 PF02300 Fumarate reductase subunit C CH64_299 PF00196 Bacterial regulatory proteins, luxR family CH64_299 PF00072 Response regulator receiver domain CH64_2990 PF13183 4Fe-4S dicluster domain CH64_2990 PF13085 2Fe-2S iron-sulfur cluster binding domain CH64_2991 PF02910 Fumarate reductase flavoprotein C-term CH64_2991 PF00890 FAD binding domain CH64_2992 PF00152 tRNA synthetases class II (D, K and N) CH64_2993 PF12795 Mechanosensitive ion channel porin domain CH64_2993 PF00924 Mechanosensitive ion channel CH64_2993 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH64_2994 PF02666 Phosphatidylserine decarboxylase CH64_2995 PF03193 RsgA GTPase CH64_2996 PF00929 Exonuclease CH64_3 PF00756 Putative esterase CH64_30 PF01455 HupF/HypC family CH64_300 PF07690 Major Facilitator Superfamily CH64_3000 PF08331 Domain of unknown function (DUF1730) CH64_3001 PF03853 YjeF-related protein N-terminus CH64_3001 PF01256 Carbohydrate kinase CH64_3002 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH64_3003 PF01520 N-acetylmuramoyl-L-alanine amidase CH64_3004 PF01119 DNA mismatch repair protein, C-terminal domain CH64_3004 PF08676 MutL C terminal dimerisation domain CH64_3006 PF17209 Hfq protein CH64_3007 PF01926 50S ribosome-binding GTPase CH64_3007 PF16360 GTP-binding GTPase Middle Region CH64_3007 PF13167 GTP-binding GTPase N-terminal CH64_3008 PF01145 SPFH domain / Band 7 family CH64_3008 PF12221 Bacterial membrane protein N terminal CH64_3009 PF01145 SPFH domain / Band 7 family CH64_301 PF14710 Respiratory nitrate reductase alpha N-terminal CH64_301 PF00384 Molybdopterin oxidoreductase CH64_301 PF01568 Molydopterin dinucleotide binding domain CH64_3010 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH64_3011 PF00709 Adenylosuccinate synthetase CH64_3012 PF02082 Transcriptional regulator CH64_3013 PF17876 Cold shock domain CH64_3013 PF00575 S1 RNA binding domain CH64_3013 PF00773 RNB domain CH64_3013 PF08206 Ribonuclease B OB domain CH64_3013 PF08461 Ribonuclease R winged-helix domain CH64_3014 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH64_3014 PF00588 SpoU rRNA Methylase family CH64_3015 PF18158 Adaptive response protein AidB N-terminal domain CH64_3015 PF02770 Acyl-CoA dehydrogenase, middle domain CH64_3015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH64_3016 PF07338 Protein of unknown function (DUF1471) CH64_3017 PF00326 Prolyl oligopeptidase family CH64_3019 PF01250 Ribosomal protein S6 CH64_302 PF14711 Respiratory nitrate reductase beta C-terminal CH64_302 PF13247 4Fe-4S dicluster domain CH64_3020 PF01084 Ribosomal protein S18 CH64_3021 PF01281 Ribosomal protein L9, N-terminal domain CH64_3021 PF03948 Ribosomal protein L9, C-terminal domain CH64_3023 PF08525 Opacity-associated protein A N-terminal motif CH64_3023 PF04225 Opacity-associated protein A LysM-like domain CH64_3024 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH64_3024 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH64_3025 PF04405 Domain of Unknown function (DUF542) CH64_3025 PF01814 Hemerythrin HHE cation binding domain CH64_3026 PF00149 Calcineurin-like phosphoesterase CH64_3026 PF02872 5'-nucleotidase, C-terminal domain CH64_3027 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH64_3028 PF00459 Inositol monophosphatase family CH64_3029 PF06526 Protein of unknown function (DUF1107) CH64_303 PF02613 Nitrate reductase delta subunit CH64_3030 PF00571 CBS domain CH64_3030 PF01595 Cyclin M transmembrane N-terminal domain CH64_3030 PF03471 Transporter associated domain CH64_3031 PF01625 Peptide methionine sulfoxide reductase CH64_3032 PF17243 POTRA domain TamA domain 1 CH64_3032 PF07244 Surface antigen variable number repeat CH64_3032 PF01103 Surface antigen CH64_3033 PF04357 TamB, inner membrane protein subunit of TAM complex CH64_3034 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH64_3035 PF00719 Inorganic pyrophosphatase CH64_3036 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_3036 PF00672 HAMP domain CH64_3036 PF02203 Tar ligand binding domain homologue CH64_3037 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH64_3038 PF01225 Mur ligase family, catalytic domain CH64_3038 PF02875 Mur ligase family, glutamate ligase domain CH64_3038 PF08245 Mur ligase middle domain CH64_304 PF02665 Nitrate reductase gamma subunit CH64_3041 PF02863 Arginine repressor, C-terminal domain CH64_3041 PF01316 Arginine repressor, DNA binding domain CH64_3042 PF00056 lactate/malate dehydrogenase, NAD binding domain CH64_3042 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH64_3043 PF13693 Winged helix-turn-helix DNA-binding CH64_3045 PF00348 Polyprenyl synthetase CH64_3046 PF00829 Ribosomal prokaryotic L21 protein CH64_3047 PF01016 Ribosomal L27 protein CH64_3048 PF00892 EamA-like transporter family CH64_3049 PF01926 50S ribosome-binding GTPase CH64_3049 PF01018 GTP1/OBG CH64_305 PF00324 Amino acid permease CH64_3050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_3050 PF00512 His Kinase A (phospho-acceptor) domain CH64_3050 PF00672 HAMP domain CH64_3051 PF00486 Transcriptional regulatory protein, C terminal CH64_3051 PF00072 Response regulator receiver domain CH64_3052 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH64_3053 PF03449 Transcription elongation factor, N-terminal CH64_3053 PF01272 Transcription elongation factor, GreA/GreB, C-term CH64_3054 PF01985 CRS1 / YhbY (CRM) domain CH64_3055 PF01728 FtsJ-like methyltransferase CH64_3056 PF17862 AAA+ lid domain CH64_3056 PF06480 FtsH Extracellular CH64_3056 PF01434 Peptidase family M41 CH64_3056 PF00004 ATPase family associated with various cellular activities (AAA) CH64_3057 PF00809 Pterin binding enzyme CH64_3058 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH64_3058 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH64_3058 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH64_3058 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH64_3059 PF03840 Preprotein translocase SecG subunit CH64_306 PF03390 2-hydroxycarboxylate transporter family CH64_3062 PF02576 RimP N-terminal domain CH64_3062 PF17384 RimP C-terminal SH3 domain CH64_3063 PF13184 NusA-like KH domain CH64_3063 PF08529 NusA N-terminal domain CH64_3063 PF00575 S1 RNA binding domain CH64_3064 PF00009 Elongation factor Tu GTP binding domain CH64_3064 PF03144 Elongation factor Tu domain 2 CH64_3064 PF11987 Translation-initiation factor 2 CH64_3064 PF04760 Translation initiation factor IF-2, N-terminal region CH64_3064 PF08364 Bacterial translation initiation factor IF-2 associated region CH64_3065 PF02033 Ribosome-binding factor A CH64_3066 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH64_3066 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH64_3066 PF09157 Pseudouridine synthase II TruB, C-terminal CH64_3067 PF00312 Ribosomal protein S15 CH64_3068 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH64_3068 PF03725 3' exoribonuclease family, domain 2 CH64_3068 PF01138 3' exoribonuclease family, domain 1 CH64_3068 PF00575 S1 RNA binding domain CH64_3068 PF00013 KH domain CH64_3069 PF13181 Tetratricopeptide repeat CH64_3069 PF07719 Tetratricopeptide repeat CH64_307 PF00072 Response regulator receiver domain CH64_3070 PF12343 Cold shock protein DEAD box A CH64_3070 PF03880 DbpA RNA binding domain CH64_3070 PF00270 DEAD/DEAH box helicase CH64_3070 PF00271 Helicase conserved C-terminal domain CH64_3072 PF00296 Luciferase-like monooxygenase CH64_3076 PF13508 Acetyltransferase (GNAT) domain CH64_3077 PF01541 GIY-YIG catalytic domain CH64_3078 PF13520 Amino acid permease CH64_3079 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH64_3079 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH64_3079 PF01276 Orn/Lys/Arg decarboxylase, major domain CH64_308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_308 PF00989 PAS fold CH64_308 PF17203 Single cache domain 3 CH64_308 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH64_3082 PF01547 Bacterial extracellular solute-binding protein CH64_3084 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3085 PF00005 ABC transporter CH64_3085 PF03459 TOBE domain CH64_3085 PF17912 MalK OB fold domain CH64_3088 PF13460 NAD(P)H-binding CH64_309 PF04960 Glutaminase CH64_3090 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH64_3090 PF03477 ATP cone domain CH64_3091 PF00005 ABC transporter CH64_3091 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH64_3092 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH64_3092 PF00005 ABC transporter CH64_3094 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3096 PF04074 YhcH/YjgK/YiaL CH64_3097 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH64_3097 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH64_3098 PF06877 Regulator of ribonuclease activity B CH64_31 PF02698 DUF218 domain CH64_3100 PF00583 Acetyltransferase (GNAT) family CH64_3101 PF10458 Valyl tRNA synthetase tRNA binding arm CH64_3101 PF08264 Anticodon-binding domain of tRNA CH64_3101 PF00133 tRNA synthetases class I (I, L, M and V) CH64_3102 PF04364 DNA polymerase III chi subunit, HolC CH64_3103 PF02789 Cytosol aminopeptidase family, N-terminal domain CH64_3103 PF00883 Cytosol aminopeptidase family, catalytic domain CH64_3104 PF03739 Lipopolysaccharide export system permease LptF/LptG CH64_3105 PF03739 Lipopolysaccharide export system permease LptF/LptG CH64_3107 PF00589 Phage integrase family CH64_3107 PF13356 Arm DNA-binding domain CH64_3108 PF00589 Phage integrase family CH64_3108 PF13356 Arm DNA-binding domain CH64_3109 PF01867 CRISPR associated protein Cas1 CH64_3111 PF09611 CRISPR-associated protein (Cas_Csy1) CH64_3112 PF09614 CRISPR-associated protein (Cas_Csy2) CH64_3113 PF09615 CRISPR-associated protein (Cas_Csy3) CH64_3114 PF09618 CRISPR-associated protein (Cas_Csy4) CH64_312 PF03239 Iron permease FTR1 family CH64_3127 PF10431 C-terminal, D2-small domain, of ClpB protein CH64_3127 PF17871 AAA lid domain CH64_3127 PF00004 ATPase family associated with various cellular activities (AAA) CH64_3127 PF07724 AAA domain (Cdc48 subfamily) CH64_3128 PF16970 Type-1 fimbrial protein, A CH64_3129 PF02753 Pili assembly chaperone PapD, C-terminal domain CH64_3129 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH64_313 PF10634 Fe2+ transport protein CH64_3130 PF00577 Outer membrane usher protein CH64_3130 PF13953 PapC C-terminal domain CH64_3130 PF13954 PapC N-terminal domain CH64_3139 PF04717 Type VI secretion system, phage-baseplate injector CH64_3147 PF00196 Bacterial regulatory proteins, luxR family CH64_3147 PF00072 Response regulator receiver domain CH64_3148 PF00072 Response regulator receiver domain CH64_3148 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_3148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_3148 PF00512 His Kinase A (phospho-acceptor) domain CH64_3148 PF01627 Hpt domain CH64_3149 PF11924 Inverse autotransporter, beta-domain CH64_3149 PF02369 Bacterial Ig-like domain (group 1) CH64_3149 PF09134 Invasin, domain 3 CH64_315 PF00005 ABC transporter CH64_315 PF02687 FtsX-like permease family CH64_315 PF12704 MacB-like periplasmic core domain CH64_3150 PF08007 Cupin superfamily protein CH64_3151 PF00583 Acetyltransferase (GNAT) family CH64_3155 PF10696 Protein of unknown function (DUF2501) CH64_3156 PF03992 Antibiotic biosynthesis monooxygenase CH64_3157 PF01791 DeoC/LacD family aldolase CH64_3158 PF13407 Periplasmic binding protein domain CH64_3159 PF02653 Branched-chain amino acid transport system / permease component CH64_3160 PF02653 Branched-chain amino acid transport system / permease component CH64_3161 PF00005 ABC transporter CH64_3162 PF04198 Putative sugar-binding domain CH64_3162 PF00325 Bacterial regulatory proteins, crp family CH64_3163 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH64_3163 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH64_3164 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH64_3166 PF13520 Amino acid permease CH64_3168 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_3169 PF00873 AcrB/AcrD/AcrF family CH64_317 PF02687 FtsX-like permease family CH64_317 PF00005 ABC transporter CH64_317 PF12704 MacB-like periplasmic core domain CH64_3170 PF00465 Iron-containing alcohol dehydrogenase CH64_3171 PF02733 Dak1 domain CH64_3172 PF02734 DAK2 domain CH64_3173 PF05524 PEP-utilising enzyme, N-terminal CH64_3173 PF00381 PTS HPr component phosphorylation site CH64_3173 PF00391 PEP-utilising enzyme, mobile domain CH64_3173 PF03610 PTS system fructose IIA component CH64_3174 PF00158 Sigma-54 interaction domain CH64_3174 PF00989 PAS fold CH64_3174 PF02954 Bacterial regulatory protein, Fis family CH64_3175 PF13407 Periplasmic binding protein domain CH64_3175 PF00356 Bacterial regulatory proteins, lacI family CH64_3176 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH64_3176 PF08244 Glycosyl hydrolases family 32 C terminal CH64_3177 PF00367 phosphotransferase system, EIIB CH64_3177 PF02378 Phosphotransferase system, EIIC CH64_3178 PF02264 LamB porin CH64_3178 PF11471 Maltoporin periplasmic N-terminal extension CH64_3179 PF00294 pfkB family carbohydrate kinase CH64_318 PF00578 AhpC/TSA family CH64_3180 PF00990 Diguanylate cyclase, GGDEF domain CH64_3181 PF07256 Protein of unknown function (DUF1435) CH64_3185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_3185 PF03466 LysR substrate binding domain CH64_3186 PF00248 Aldo/keto reductase family CH64_3187 PF08468 Methyltransferase small domain N-terminal CH64_3187 PF05175 Methyltransferase small domain CH64_3188 PF03603 DNA polymerase III psi subunit CH64_3189 PF00583 Acetyltransferase (GNAT) family CH64_3190 PF03144 Elongation factor Tu domain 2 CH64_3190 PF00009 Elongation factor Tu GTP binding domain CH64_3190 PF16658 Class II release factor RF3, C-terminal domain CH64_3192 PF04972 BON domain CH64_3193 PF07043 Protein of unknown function (DUF1328) CH64_3194 PF01734 Patatin-like phospholipase CH64_3196 PF01026 TatD related DNase CH64_3197 PF01773 Na+ dependent nucleoside transporter N-terminus CH64_3197 PF07670 Nucleoside recognition CH64_3197 PF07662 Na+ dependent nucleoside transporter C-terminus CH64_3198 PF01791 DeoC/LacD family aldolase CH64_3199 PF00591 Glycosyl transferase family, a/b domain CH64_3199 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH64_3199 PF02885 Glycosyl transferase family, helical bundle domain CH64_32 PF00390 Malic enzyme, N-terminal domain CH64_32 PF03949 Malic enzyme, NAD binding domain CH64_320 PF09313 Domain of unknown function (DUF1971) CH64_320 PF03848 Tellurite resistance protein TehB CH64_3200 PF01676 Metalloenzyme superfamily CH64_3201 PF01048 Phosphorylase superfamily CH64_3202 PF10144 Bacterial virulence factor haemolysin CH64_3203 PF18429 Domain of unknown function (DUF5609) CH64_3204 PF18073 Rubredoxin metal binding domain CH64_3205 PF13521 AAA domain CH64_3205 PF01381 Helix-turn-helix CH64_3206 PF00107 Zinc-binding dehydrogenase CH64_3206 PF08240 Alcohol dehydrogenase GroES-like domain CH64_3207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_3207 PF03466 LysR substrate binding domain CH64_3208 PF00005 ABC transporter CH64_3208 PF12848 ABC transporter CH64_3209 PF00589 Phage integrase family CH64_3209 PF12167 Arm DNA-binding domain CH64_321 PF06276 Ferric iron reductase FhuF-like transporter CH64_321 PF11575 FhuF 2Fe-2S C-terminal domain CH64_3211 PF00691 OmpA family CH64_3212 PF17152 Periplasmic sensor domain CH64_3212 PF00990 Diguanylate cyclase, GGDEF domain CH64_3213 PF13689 YfiR/HmsC-like CH64_3214 PF00689 Cation transporting ATPase, C-terminus CH64_3214 PF00690 Cation transporter/ATPase, N-terminus CH64_3215 PF01464 Transglycosylase SLT domain CH64_3215 PF14718 Soluble lytic murein transglycosylase L domain CH64_3216 PF01371 Trp repressor protein CH64_3217 PF01931 Protein of unknown function DUF84 CH64_3218 PF12833 Helix-turn-helix domain CH64_3218 PF06445 GyrI-like small molecule binding domain CH64_3219 PF00300 Histidine phosphatase superfamily (branch 1) CH64_322 PF00557 Metallopeptidase family M24 CH64_322 PF01321 Creatinase/Prolidase N-terminal domain CH64_3220 PF05981 CreA protein CH64_3221 PF00072 Response regulator receiver domain CH64_3221 PF00486 Transcriptional regulatory protein, C terminal CH64_3222 PF00696 Amino acid kinase family CH64_3222 PF13840 ACT domain CH64_3222 PF00742 Homoserine dehydrogenase CH64_3222 PF01842 ACT domain CH64_3222 PF03447 Homoserine dehydrogenase, NAD binding domain CH64_3223 PF00288 GHMP kinases N terminal domain CH64_3223 PF08544 GHMP kinases C terminal CH64_3224 PF14821 Threonine synthase N terminus CH64_3224 PF00291 Pyridoxal-phosphate dependent enzyme CH64_3225 PF03883 Peroxide stress protein YaaA CH64_3226 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH64_3227 PF00994 Probable molybdopterin binding domain CH64_3228 PF07690 Major Facilitator Superfamily CH64_3230 PF01184 GPR1/FUN34/yaaH family CH64_3231 PF00012 Hsp70 protein CH64_3232 PF00684 DnaJ central domain CH64_3232 PF00226 DnaJ domain CH64_3232 PF01556 DnaJ C terminal domain CH64_3233 PF06965 Na+/H+ antiporter 1 CH64_3234 PF03466 LysR substrate binding domain CH64_3234 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_3235 PF01649 Ribosomal protein S20 CH64_3236 PF01687 Riboflavin kinase CH64_3236 PF06574 FAD synthetase CH64_3237 PF08264 Anticodon-binding domain of tRNA CH64_3237 PF06827 Zinc finger found in FPG and IleRS CH64_3237 PF00133 tRNA synthetases class I (I, L, M and V) CH64_3238 PF01252 Signal peptidase (SPase) II CH64_3239 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH64_324 PF01522 Polysaccharide deacetylase CH64_324 PF14883 Hypothetical glycosyl hydrolase family 13 CH64_3240 PF02401 LytB protein CH64_3241 PF05173 Dihydrodipicolinate reductase, C-terminus CH64_3241 PF01113 Dihydrodipicolinate reductase, N-terminus CH64_3242 PF00117 Glutamine amidotransferase class-I CH64_3242 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH64_3243 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH64_3243 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH64_3243 PF02142 MGS-like domain CH64_3244 PF01810 LysE type translocator CH64_3245 PF06738 Putative threonine/serine exporter CH64_3246 PF12821 Threonine/Serine exporter, ThrE CH64_3247 PF00186 Dihydrofolate reductase CH64_3248 PF00149 Calcineurin-like phosphoesterase CH64_3249 PF04379 ApaG domain CH64_325 PF00535 Glycosyl transferase family 2 CH64_3250 PF00398 Ribosomal RNA adenine dimethylase CH64_3251 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH64_3252 PF09312 SurA N-terminal domain CH64_3252 PF00639 PPIC-type PPIASE domain CH64_3253 PF04453 LPS transport system D CH64_3253 PF03968 OstA-like protein CH64_3254 PF00226 DnaJ domain CH64_3254 PF05099 Tellurite resistance protein TerB CH64_3256 PF00849 RNA pseudouridylate synthase CH64_3257 PF00176 SNF2 family N-terminal domain CH64_3257 PF12137 RNA polymerase recycling family C-terminal CH64_3257 PF00271 Helicase conserved C-terminal domain CH64_3257 PF18339 RapA N-terminal Tudor like domain 1 CH64_3257 PF18337 RapA N-terminal Tudor like domain CH64_3258 PF00136 DNA polymerase family B CH64_3258 PF03104 DNA polymerase family B, exonuclease domain CH64_3259 PF09335 SNARE associated Golgi protein CH64_3260 PF00005 ABC transporter CH64_3261 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3263 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_3263 PF12793 Sugar transport-related sRNA regulator N-term CH64_3264 PF04055 Radical SAM superfamily CH64_3266 PF07690 Major Facilitator Superfamily CH64_3270 PF00694 Aconitase C-terminal domain CH64_3271 PF00330 Aconitase family (aconitate hydratase) CH64_3272 PF00180 Isocitrate/isopropylmalate dehydrogenase CH64_3273 PF00682 HMGL-like CH64_3273 PF08502 LeuA allosteric (dimerisation) domain CH64_3274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_3274 PF03466 LysR substrate binding domain CH64_3275 PF00501 AMP-binding enzyme CH64_3276 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_3276 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH64_3276 PF00205 Thiamine pyrophosphate enzyme, central domain CH64_3277 PF10369 Small subunit of acetolactate synthase CH64_3278 PF00356 Bacterial regulatory proteins, lacI family CH64_3278 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH64_3279 PF06610 L-alanine exporter CH64_3280 PF02381 MraZ protein, putative antitoxin-like CH64_3281 PF01795 MraW methylase family CH64_3282 PF04999 Cell division protein FtsL CH64_3283 PF03717 Penicillin-binding Protein dimerisation domain CH64_3283 PF00905 Penicillin binding protein transpeptidase domain CH64_3284 PF02875 Mur ligase family, glutamate ligase domain CH64_3284 PF08245 Mur ligase middle domain CH64_3284 PF01225 Mur ligase family, catalytic domain CH64_3285 PF08245 Mur ligase middle domain CH64_3285 PF02875 Mur ligase family, glutamate ligase domain CH64_3285 PF01225 Mur ligase family, catalytic domain CH64_3286 PF00953 Glycosyl transferase family 4 CH64_3286 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH64_3287 PF02875 Mur ligase family, glutamate ligase domain CH64_3287 PF08245 Mur ligase middle domain CH64_3288 PF01098 Cell cycle protein CH64_3289 PF03033 Glycosyltransferase family 28 N-terminal domain CH64_3289 PF04101 Glycosyltransferase family 28 C-terminal domain CH64_329 PF02562 PhoH-like protein CH64_3290 PF02875 Mur ligase family, glutamate ligase domain CH64_3290 PF08245 Mur ligase middle domain CH64_3290 PF01225 Mur ligase family, catalytic domain CH64_3291 PF01820 D-ala D-ala ligase N-terminus CH64_3291 PF07478 D-ala D-ala ligase C-terminus CH64_3292 PF03799 Cell division protein FtsQ CH64_3292 PF08478 POTRA domain, FtsQ-type CH64_3293 PF02491 SHS2 domain inserted in FTSA CH64_3294 PF00091 Tubulin/FtsZ family, GTPase domain CH64_3294 PF12327 FtsZ family, C-terminal domain CH64_3295 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH64_3297 PF06558 Secretion monitor precursor protein (SecM) CH64_3298 PF01043 SecA preprotein cross-linking domain CH64_3298 PF07517 SecA DEAD-like domain CH64_3298 PF02810 SEC-C motif CH64_3298 PF07516 SecA Wing and Scaffold domain CH64_3299 PF00293 NUDIX domain CH64_33 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH64_33 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH64_330 PF01699 Sodium/calcium exchanger protein CH64_3300 PF03884 DNA gyrase inhibitor YacG CH64_3301 PF07072 Cell division protein CH64_3302 PF01121 Dephospho-CoA kinase CH64_3303 PF00478 IMP dehydrogenase / GMP reductase domain CH64_3305 PF03797 Autotransporter beta-domain CH64_3306 PF00482 Type II secretion system (T2SS), protein F CH64_3307 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH64_3307 PF00437 Type II/IV secretion system protein CH64_3308 PF07963 Prokaryotic N-terminal methylation motif CH64_3309 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH64_3309 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH64_3310 PF01510 N-acetylmuramoyl-L-alanine amidase CH64_3311 PF17113 Regulatory signalling modulator protein AmpE CH64_3312 PF00324 Amino acid permease CH64_3313 PF07729 FCD domain CH64_3313 PF00392 Bacterial regulatory proteins, gntR family CH64_3314 PF00456 Transketolase, thiamine diphosphate binding domain CH64_3314 PF17831 Pyruvate dehydrogenase E1 component middle domain CH64_3315 PF02817 e3 binding domain CH64_3315 PF00364 Biotin-requiring enzyme CH64_3315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH64_3316 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_3316 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH64_3318 PF12833 Helix-turn-helix domain CH64_3318 PF02311 AraC-like ligand binding domain CH64_3319 PF07715 TonB-dependent Receptor Plug Domain CH64_3319 PF00593 TonB dependent receptor CH64_332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_332 PF03466 LysR substrate binding domain CH64_3320 PF00330 Aconitase family (aconitate hydratase) CH64_3320 PF11791 Aconitate B N-terminal domain CH64_3320 PF06434 Aconitate hydratase 2 N-terminus CH64_3321 PF06062 Uncharacterised protein family (UPF0231) CH64_3322 PF00892 EamA-like transporter family CH64_3323 PF05594 Haemagluttinin repeat CH64_3323 PF13332 Hemagglutinin repeat CH64_3323 PF05860 haemagglutination activity domain CH64_3323 PF04829 Pre-toxin domain with VENN motif CH64_3323 PF14436 Bacterial EndoU nuclease CH64_3324 PF07262 CDI immunity protein CH64_3328 PF04829 Pre-toxin domain with VENN motif CH64_3329 PF07262 CDI immunity protein CH64_333 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH64_333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_333 PF00672 HAMP domain CH64_333 PF07730 Histidine kinase CH64_3330 PF02675 S-adenosylmethionine decarboxylase CH64_3331 PF17284 Spermidine synthase tetramerisation domain CH64_3332 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH64_3333 PF07731 Multicopper oxidase CH64_3333 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH64_3333 PF07732 Multicopper oxidase CH64_3333 PF00394 Multicopper oxidase CH64_3334 PF00156 Phosphoribosyl transferase domain CH64_3335 PF00484 Carbonic anhydrase CH64_3336 PF00005 ABC transporter CH64_3337 PF01061 ABC-2 type transporter CH64_3338 PF01522 Polysaccharide deacetylase CH64_3339 PF02261 Aspartate decarboxylase CH64_3340 PF14496 C-terminal novel E3 ligase, LRR-interacting CH64_3340 PF12468 Type III secretion system leucine rich repeat protein CH64_3341 PF02569 Pantoate-beta-alanine ligase CH64_3342 PF02548 Ketopantoate hydroxymethyltransferase CH64_3343 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH64_3344 PF12627 Probable RNA and SrmB- binding site of polymerase A CH64_3344 PF12626 Polymerase A arginine-rich C-terminus CH64_3344 PF01743 Poly A polymerase head domain CH64_3345 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH64_3346 PF14814 Bifunctional transglycosylase second domain CH64_3346 PF00905 Penicillin binding protein transpeptidase domain CH64_3346 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH64_3346 PF00912 Transglycosylase CH64_3347 PF00005 ABC transporter CH64_3348 PF01497 Periplasmic binding protein CH64_3349 PF01032 FecCD transport family CH64_335 PF02322 Cytochrome bd terminal oxidase subunit II CH64_3351 PF00202 Aminotransferase class-III CH64_3352 PF00654 Voltage gated chloride channel CH64_3353 PF01521 Iron-sulphur cluster biosynthesis CH64_3354 PF03458 UPF0126 domain CH64_3355 PF01497 Periplasmic binding protein CH64_3356 PF01048 Phosphorylase superfamily CH64_3357 PF13286 Phosphohydrolase-associated domain CH64_3357 PF01966 HD domain CH64_3358 PF00595 PDZ domain CH64_3359 PF01627 Hpt domain CH64_3359 PF00512 His Kinase A (phospho-acceptor) domain CH64_3359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_3359 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH64_3359 PF00072 Response regulator receiver domain CH64_3359 PF00672 HAMP domain CH64_336 PF01654 Cytochrome bd terminal oxidase subunit I CH64_3360 PF05958 tRNA (Uracil-5-)-methyltransferase CH64_3360 PF01938 TRAM domain CH64_3361 PF13291 ACT domain CH64_3361 PF02824 TGS domain CH64_3361 PF04607 Region found in RelA / SpoT proteins CH64_3362 PF03819 MazG nucleotide pyrophosphohydrolase domain CH64_3363 PF00117 Glutamine amidotransferase class-I CH64_3363 PF06418 CTP synthase N-terminus CH64_3364 PF03952 Enolase, N-terminal domain CH64_3364 PF00113 Enolase, C-terminal TIM barrel domain CH64_3367 PF00080 Copper/zinc superoxide dismutase (SODC) CH64_3368 PF04055 Radical SAM superfamily CH64_3369 PF01242 6-pyruvoyl tetrahydropterin synthase CH64_337 PF00155 Aminotransferase class I and II CH64_337 PF00392 Bacterial regulatory proteins, gntR family CH64_3370 PF00667 FAD binding domain CH64_3370 PF00258 Flavodoxin CH64_3370 PF00175 Oxidoreductase NAD-binding domain CH64_3371 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH64_3371 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH64_3372 PF01507 Phosphoadenosine phosphosulfate reductase family CH64_3373 PF04389 Peptidase family M28 CH64_3374 PF10414 Sirohaem synthase dimerisation region CH64_3374 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH64_3374 PF14824 Sirohaem biosynthesis protein central CH64_3375 PF01507 Phosphoadenosine phosphosulfate reductase family CH64_3376 PF00009 Elongation factor Tu GTP binding domain CH64_3378 PF12084 Protein of unknown function (DUF3561) CH64_3379 PF00005 ABC transporter CH64_338 PF00202 Aminotransferase class-III CH64_3380 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3381 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_3382 PF04977 Septum formation initiator CH64_3383 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH64_3384 PF02542 YgbB family CH64_3385 PF01142 tRNA pseudouridine synthase D (TruD) CH64_3386 PF01975 Survival protein SurE CH64_3388 PF01476 LysM domain CH64_3388 PF01551 Peptidase family M23 CH64_3389 PF04539 Sigma-70 region 3 CH64_3389 PF04545 Sigma-70, region 4 CH64_3389 PF04542 Sigma-70 region 2 CH64_3389 PF00140 Sigma-70 factor, region 1.2 CH64_339 PF04958 Arginine N-succinyltransferase beta subunit CH64_3390 PF05190 MutS family domain IV CH64_3390 PF01624 MutS domain I CH64_3390 PF05188 MutS domain II CH64_3390 PF00488 MutS domain V CH64_3390 PF05192 MutS domain III CH64_3392 PF00419 Fimbrial protein CH64_3393 PF00419 Fimbrial protein CH64_3394 PF13953 PapC C-terminal domain CH64_3394 PF13954 PapC N-terminal domain CH64_3394 PF00577 Outer membrane usher protein CH64_3395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH64_3395 PF02753 Pili assembly chaperone PapD, C-terminal domain CH64_3397 PF00419 Fimbrial protein CH64_34 PF04172 LrgB-like family CH64_340 PF00171 Aldehyde dehydrogenase family CH64_3403 PF00664 ABC transporter transmembrane region CH64_3403 PF03412 Peptidase C39 family CH64_3403 PF00005 ABC transporter CH64_3404 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_3405 PF02687 FtsX-like permease family CH64_3405 PF00005 ABC transporter CH64_3405 PF12704 MacB-like periplasmic core domain CH64_3406 PF02321 Outer membrane efflux protein CH64_3407 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_3407 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_341 PF04996 Succinylarginine dihydrolase CH64_3411 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_3412 PF13018 Extended Signal Peptide of Type V secretion system CH64_3412 PF03212 Pertactin CH64_3412 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH64_3412 PF03797 Autotransporter beta-domain CH64_3413 PF03466 LysR substrate binding domain CH64_3413 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_3414 PF02447 GntP family permease CH64_3415 PF00291 Pyridoxal-phosphate dependent enzyme CH64_3418 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3419 PF00005 ABC transporter CH64_342 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH64_3420 PF01546 Peptidase family M20/M25/M40 CH64_3421 PF09347 Domain of unknown function (DUF1989) CH64_3424 PF14492 Elongation Factor G, domain II CH64_3424 PF00679 Elongation factor G C-terminus CH64_3424 PF03764 Elongation factor G, domain IV CH64_3424 PF03144 Elongation factor Tu domain 2 CH64_3424 PF00009 Elongation factor Tu GTP binding domain CH64_3425 PF01022 Bacterial regulatory protein, arsR family CH64_3426 PF05681 Fumarate hydratase (Fumerase) CH64_3426 PF05683 Fumarase C-terminus CH64_3428 PF00384 Molybdopterin oxidoreductase CH64_3428 PF01568 Molydopterin dinucleotide binding domain CH64_3428 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH64_3429 PF12800 4Fe-4S binding domain CH64_3429 PF13247 4Fe-4S dicluster domain CH64_343 PF00267 Gram-negative porin CH64_3430 PF04976 DMSO reductase anchor subunit (DmsC) CH64_3431 PF02613 Nitrate reductase delta subunit CH64_3434 PF00005 ABC transporter CH64_3435 PF02653 Branched-chain amino acid transport system / permease component CH64_3436 PF00456 Transketolase, thiamine diphosphate binding domain CH64_3437 PF02780 Transketolase, C-terminal domain CH64_3437 PF02779 Transketolase, pyrimidine binding domain CH64_3438 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH64_3438 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH64_3441 PF07690 Major Facilitator Superfamily CH64_3442 PF02464 Competence-damaged protein CH64_3443 PF00154 recA bacterial DNA recombination protein CH64_3444 PF02631 RecX family CH64_3445 PF02272 DHHA1 domain CH64_3445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH64_3445 PF01411 tRNA synthetases class II (A) CH64_3446 PF02599 Global regulator protein family CH64_345 PF01979 Amidohydrolase family CH64_3451 PF13419 Haloacid dehalogenase-like hydrolase CH64_3452 PF09335 SNARE associated Golgi protein CH64_3453 PF04262 Glutamate-cysteine ligase CH64_3454 PF02664 S-Ribosylhomocysteinase (LuxS) CH64_3455 PF00571 CBS domain CH64_3455 PF03471 Transporter associated domain CH64_3455 PF01595 Cyclin M transmembrane N-terminal domain CH64_3456 PF01578 Cytochrome C assembly protein CH64_3457 PF00448 SRP54-type protein, GTPase domain CH64_3457 PF02881 SRP54-type protein, helical bundle domain CH64_3457 PF02978 Signal peptide binding domain CH64_3458 PF00886 Ribosomal protein S16 CH64_3459 PF05239 PRC-barrel domain CH64_3459 PF01782 RimM N-terminal domain CH64_346 PF00392 Bacterial regulatory proteins, gntR family CH64_346 PF07702 UTRA domain CH64_3460 PF01746 tRNA (Guanine-1)-methyltransferase CH64_3461 PF01245 Ribosomal protein L19 CH64_3462 PF04338 Protein of unknown function, DUF481 CH64_3463 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH64_3464 PF00072 Response regulator receiver domain CH64_3464 PF04397 LytTr DNA-binding domain CH64_3465 PF00793 DAHP synthetase I family CH64_3466 PF01817 Chorismate mutase type II CH64_3466 PF02153 Prephenate dehydrogenase CH64_3467 PF00800 Prephenate dehydratase CH64_3467 PF01817 Chorismate mutase type II CH64_3468 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH64_3469 PF13525 Outer membrane lipoprotein CH64_347 PF01979 Amidohydrolase family CH64_3470 PF01479 S4 domain CH64_3470 PF00849 RNA pseudouridylate synthase CH64_3472 PF00004 ATPase family associated with various cellular activities (AAA) CH64_3472 PF17871 AAA lid domain CH64_3472 PF10431 C-terminal, D2-small domain, of ClpB protein CH64_3472 PF07724 AAA domain (Cdc48 subfamily) CH64_3472 PF02861 Clp amino terminal domain, pathogenicity island component CH64_3478 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH64_3479 PF13091 PLD-like domain CH64_3480 PF13607 Succinyl-CoA ligase like flavodoxin domain CH64_3480 PF13380 CoA binding domain CH64_3480 PF00583 Acetyltransferase (GNAT) family CH64_3482 PF00085 Thioredoxin CH64_3483 PF00588 SpoU rRNA Methylase family CH64_3483 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH64_3484 PF07690 Major Facilitator Superfamily CH64_3485 PF00529 HlyD membrane-fusion protein of T1SS CH64_3485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_3486 PF01047 MarR family CH64_3487 PF05437 Branched-chain amino acid transport protein (AzlD) CH64_3488 PF03591 AzlC protein CH64_3489 PF07690 Major Facilitator Superfamily CH64_349 PF05962 HutD CH64_3492 PF00266 Aminotransferase class-V CH64_3493 PF00795 Carbon-nitrogen hydrolase CH64_3494 PF00155 Aminotransferase class I and II CH64_3495 PF00596 Class II Aldolase and Adducin N-terminal domain CH64_3497 PF03079 ARD/ARD' family CH64_3498 PF01008 Initiation factor 2 subunit family CH64_3499 PF01636 Phosphotransferase enzyme family CH64_35 PF03788 LrgA family CH64_350 PF13407 Periplasmic binding protein domain CH64_3500 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH64_3500 PF08479 POTRA domain, ShlB-type CH64_3501 PF05860 haemagglutination activity domain CH64_3502 PF18071 HMW1C N-terminal CH64_3502 PF18254 HMW1 domain 2 CH64_3503 PF09317 Domain of unknown function (DUF1974) CH64_3503 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH64_3503 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH64_3504 PF13580 SIS domain CH64_3505 PF03734 L,D-transpeptidase catalytic domain CH64_3506 PF13230 Glutamine amidotransferases class-II CH64_3507 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH64_3507 PF11973 NQRA C-terminal domain CH64_3508 PF03116 NQR2, RnfD, RnfE family CH64_3509 PF04205 FMN-binding domain CH64_351 PF00005 ABC transporter CH64_3510 PF02508 Rnf-Nqr subunit, membrane protein CH64_3511 PF02508 Rnf-Nqr subunit, membrane protein CH64_3512 PF00111 2Fe-2S iron-sulfur cluster binding domain CH64_3512 PF00970 Oxidoreductase FAD-binding domain CH64_3512 PF00175 Oxidoreductase NAD-binding domain CH64_3513 PF02424 ApbE family CH64_3514 PF04400 (Na+)-NQR maturation NqrM CH64_3515 PF03009 Glycerophosphoryl diester phosphodiesterase family CH64_3516 PF07478 D-ala D-ala ligase C-terminus CH64_3516 PF01820 D-ala D-ala ligase N-terminus CH64_3517 PF00817 impB/mucB/samB family CH64_3517 PF11799 impB/mucB/samB family C-terminal domain CH64_3517 PF11798 IMS family HHH motif CH64_3518 PF07687 Peptidase dimerisation domain CH64_3518 PF01546 Peptidase family M20/M25/M40 CH64_3519 PF00156 Phosphoribosyl transferase domain CH64_352 PF02653 Branched-chain amino acid transport system / permease component CH64_3521 PF07417 Sigma factor-binding transcriptional regulator Crl CH64_3522 PF00696 Amino acid kinase family CH64_3522 PF01472 PUA domain CH64_3523 PF00171 Aldehyde dehydrogenase family CH64_3524 PF07238 PilZ domain CH64_3524 PF07317 Flagellar regulator YcgR CH64_3527 PF08241 Methyltransferase domain CH64_353 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CH64_3530 PF01202 Shikimate kinase CH64_3531 PF06865 Pyrimidine/purine nucleoside phosphorylase CH64_3532 PF04381 Putative exonuclease, RdgC CH64_3533 PF00480 ROK family CH64_3534 PF13476 AAA domain CH64_3535 PF00149 Calcineurin-like phosphoesterase CH64_3535 PF12320 Type 5 capsule protein repressor C-terminal domain CH64_3536 PF00486 Transcriptional regulatory protein, C terminal CH64_3536 PF00072 Response regulator receiver domain CH64_3537 PF00512 His Kinase A (phospho-acceptor) domain CH64_3537 PF00989 PAS fold CH64_3537 PF11808 Phosphate regulon sensor protein PhoR CH64_3537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_3538 PF12849 PBP superfamily domain CH64_3539 PF05525 Branched-chain amino acid transport protein CH64_3540 PF00324 Amino acid permease CH64_3541 PF02903 Alpha amylase, N-terminal ig-like domain CH64_3541 PF00128 Alpha amylase, catalytic domain CH64_3544 PF01848 Hok/gef family CH64_3545 PF00578 AhpC/TSA family CH64_3545 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH64_3546 PF04336 Acyl carrier protein phosphodiesterase CH64_3547 PF02547 Queuosine biosynthesis protein CH64_3548 PF01702 Queuine tRNA-ribosyltransferase CH64_3549 PF02699 Preprotein translocase subunit CH64_355 PF01551 Peptidase family M23 CH64_355 PF01476 LysM domain CH64_3550 PF02355 Protein export membrane protein CH64_3550 PF07549 SecD/SecF GG Motif CH64_3550 PF13721 SecD export protein N-terminal TM region CH64_3551 PF02355 Protein export membrane protein CH64_3551 PF07549 SecD/SecF GG Motif CH64_3553 PF03477 ATP cone domain CH64_3554 PF01872 RibD C-terminal domain CH64_3554 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH64_3555 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH64_3556 PF01029 NusB family CH64_3557 PF02769 AIR synthase related protein, C-terminal domain CH64_3557 PF00586 AIR synthase related protein, N-terminal domain CH64_3558 PF04608 Phosphatidylglycerophosphatase A CH64_3559 PF02779 Transketolase, pyrimidine binding domain CH64_3559 PF02780 Transketolase, C-terminal domain CH64_3559 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH64_356 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH64_3560 PF00348 Polyprenyl synthetase CH64_3561 PF02609 Exonuclease VII small subunit CH64_3562 PF02926 THUMP domain CH64_3562 PF02568 Thiamine biosynthesis protein (ThiI) CH64_3563 PF01965 DJ-1/PfpI family CH64_3564 PF02558 Ketopantoate reductase PanE/ApbA CH64_3564 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH64_3565 PF04461 Protein of unknown function (DUF520) CH64_3566 PF07690 Major Facilitator Superfamily CH64_3567 PF01040 UbiA prenyltransferase family CH64_3568 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH64_3569 PF00510 Cytochrome c oxidase subunit III CH64_3570 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH64_3571 PF06481 COX Aromatic Rich Motif CH64_3571 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH64_3572 PF03502 Nucleoside-specific channel-forming protein, Tsx CH64_3573 PF07690 Major Facilitator Superfamily CH64_3574 PF03923 Uncharacterized lipoprotein CH64_3574 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH64_3575 PF01722 BolA-like protein CH64_3576 PF05697 Bacterial trigger factor protein (TF) CH64_3576 PF05698 Bacterial trigger factor protein (TF) C-terminus CH64_3576 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH64_3578 PF00574 Clp protease CH64_3579 PF06689 ClpX C4-type zinc finger CH64_3579 PF07724 AAA domain (Cdc48 subfamily) CH64_3579 PF10431 C-terminal, D2-small domain, of ClpB protein CH64_358 PF00455 DeoR C terminal sensor domain CH64_358 PF08220 DeoR-like helix-turn-helix domain CH64_3580 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH64_3580 PF05362 Lon protease (S16) C-terminal proteolytic domain CH64_3580 PF00004 ATPase family associated with various cellular activities (AAA) CH64_3581 PF00216 Bacterial DNA-binding protein CH64_3582 PF13145 PPIC-type PPIASE domain CH64_3585 PF06508 Queuosine biosynthesis protein QueC CH64_3586 PF12793 Sugar transport-related sRNA regulator N-term CH64_3586 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_3589 PF13404 AsnC-type helix-turn-helix domain CH64_3589 PF01037 Lrp/AsnC ligand binding domain CH64_3590 PF00005 ABC transporter CH64_3590 PF00664 ABC transporter transmembrane region CH64_3591 PF00664 ABC transporter transmembrane region CH64_3591 PF00005 ABC transporter CH64_3592 PF00543 Nitrogen regulatory protein P-II CH64_3593 PF00909 Ammonium Transporter Family CH64_3595 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH64_3596 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH64_3597 PF05321 Haemolysin expression modulating protein CH64_3598 PF10757 Biofilm formation regulator YbaJ CH64_36 PF07690 Major Facilitator Superfamily CH64_360 PF00196 Bacterial regulatory proteins, luxR family CH64_360 PF00072 Response regulator receiver domain CH64_3600 PF00005 ABC transporter CH64_3601 PF00950 ABC 3 transport family CH64_3602 PF01297 Zinc-uptake complex component A periplasmic CH64_3603 PF00444 Ribosomal protein L36 CH64_3604 PF01197 Ribosomal protein L31 CH64_3605 PF00873 AcrB/AcrD/AcrF family CH64_3606 PF00529 HlyD membrane-fusion protein of T1SS CH64_3606 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_3607 PF08361 MAATS-type transcriptional repressor, C-terminal region CH64_3607 PF00440 Bacterial regulatory proteins, tetR family CH64_3608 PF02635 DsrE/DsrF-like family CH64_3609 PF12795 Mechanosensitive ion channel porin domain CH64_3609 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH64_3609 PF00924 Mechanosensitive ion channel CH64_361 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH64_3610 PF10689 Protein of unknown function (DUF2496) CH64_3612 PF04304 Protein of unknown function (DUF454) CH64_3613 PF00156 Phosphoribosyl transferase domain CH64_3614 PF12170 DNA polymerase III tau subunit V interacting with alpha CH64_3614 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH64_3614 PF12169 DNA polymerase III subunits gamma and tau domain III CH64_3615 PF02575 YbaB/EbfC DNA-binding family CH64_3616 PF13662 Toprim domain CH64_3616 PF02132 RecR protein CH64_3617 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_3617 PF00183 Hsp90 protein CH64_3618 PF05191 Adenylate kinase, active site lid CH64_3619 PF00762 Ferrochelatase CH64_362 PF13520 Amino acid permease CH64_3620 PF01943 Polysaccharide biosynthesis protein CH64_3621 PF00535 Glycosyl transferase family 2 CH64_3622 PF00534 Glycosyl transferases group 1 CH64_3622 PF13439 Glycosyltransferase Family 4 CH64_3624 PF00953 Glycosyl transferase family 4 CH64_3625 PF02719 Polysaccharide biosynthesis protein CH64_3626 PF13439 Glycosyltransferase Family 4 CH64_3626 PF00534 Glycosyl transferases group 1 CH64_3627 PF16363 GDP-mannose 4,6 dehydratase CH64_3628 PF00294 pfkB family carbohydrate kinase CH64_3629 PF00999 Sodium/hydrogen exchanger family CH64_3629 PF02254 TrkA-N domain CH64_363 PF06071 Protein of unknown function (DUF933) CH64_363 PF01926 50S ribosome-binding GTPase CH64_3630 PF07690 Major Facilitator Superfamily CH64_3631 PF02872 5'-nucleotidase, C-terminal domain CH64_3631 PF00149 Calcineurin-like phosphoesterase CH64_3632 PF04073 Aminoacyl-tRNA editing domain CH64_3633 PF01963 TraB family CH64_3634 PF00403 Heavy-metal-associated domain CH64_3635 PF13411 MerR HTH family regulatory protein CH64_3636 PF01957 NfeD-like C-terminal, partner-binding CH64_3637 PF01145 SPFH domain / Band 7 family CH64_3637 PF16200 C-terminal region of band_7 CH64_3638 PF00085 Thioredoxin CH64_3639 PF00106 short chain dehydrogenase CH64_3640 PF13472 GDSL-like Lipase/Acylhydrolase family CH64_3641 PF00005 ABC transporter CH64_3643 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH64_3643 PF02222 ATP-grasp domain CH64_3644 PF00731 AIR carboxylase CH64_3645 PF00149 Calcineurin-like phosphoesterase CH64_3646 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH64_3647 PF01406 tRNA synthetases class I (C) catalytic domain CH64_3647 PF09190 DALR domain CH64_3649 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH64_3649 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH64_365 PF01195 Peptidyl-tRNA hydrolase CH64_3651 PF00589 Phage integrase family CH64_3651 PF13356 Arm DNA-binding domain CH64_3651 PF14659 Phage integrase, N-terminal SAM-like domain CH64_3652 PF13356 Arm DNA-binding domain CH64_3652 PF00589 Phage integrase family CH64_3657 PF00145 C-5 cytosine-specific DNA methylase CH64_366 PF10762 Protein of unknown function (DUF2583) CH64_3663 PF01926 50S ribosome-binding GTPase CH64_3666 PF06067 Domain of unknown function (DUF932) CH64_3667 PF03230 Antirestriction protein CH64_3669 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CH64_3671 PF00589 Phage integrase family CH64_3672 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CH64_3675 PF00959 Phage lysozyme CH64_3676 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH64_368 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH64_368 PF14572 Phosphoribosyl synthetase-associated domain CH64_3684 PF00589 Phage integrase family CH64_369 PF08544 GHMP kinases C terminal CH64_369 PF00288 GHMP kinases N terminal domain CH64_3690 PF13276 HTH-like domain CH64_3690 PF13683 Integrase core domain CH64_3695 PF13018 Extended Signal Peptide of Type V secretion system CH64_3695 PF05860 haemagglutination activity domain CH64_3695 PF04829 Pre-toxin domain with VENN motif CH64_3695 PF13332 Hemagglutinin repeat CH64_3696 PF08479 POTRA domain, ShlB-type CH64_3696 PF17287 POTRA domain CH64_3696 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH64_3697 PF13018 Extended Signal Peptide of Type V secretion system CH64_3697 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH64_3697 PF03797 Autotransporter beta-domain CH64_3697 PF03212 Pertactin CH64_3699 PF00005 ABC transporter CH64_3699 PF00664 ABC transporter transmembrane region CH64_370 PF03550 Outer membrane lipoprotein LolB CH64_3702 PF03459 TOBE domain CH64_3703 PF00149 Calcineurin-like phosphoesterase CH64_3705 PF00196 Bacterial regulatory proteins, luxR family CH64_3706 PF00313 'Cold-shock' DNA-binding domain CH64_3707 PF00313 'Cold-shock' DNA-binding domain CH64_3708 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH64_3709 PF00990 Diguanylate cyclase, GGDEF domain CH64_3709 PF05230 MASE2 domain CH64_371 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH64_371 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH64_371 PF01488 Shikimate / quinate 5-dehydrogenase CH64_3710 PF02416 mttA/Hcf106 family CH64_3711 PF04055 Radical SAM superfamily CH64_3711 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH64_3712 PF03099 Biotin/lipoate A/B protein ligase family CH64_3713 PF04359 Protein of unknown function (DUF493) CH64_3714 PF07943 Penicillin-binding protein 5, C-terminal domain CH64_3714 PF00768 D-alanyl-D-alanine carboxypeptidase CH64_3715 PF03330 Lytic transglycolase CH64_3715 PF05036 Sporulation related domain CH64_3716 PF01098 Cell cycle protein CH64_3717 PF03717 Penicillin-binding Protein dimerisation domain CH64_3717 PF00905 Penicillin binding protein transpeptidase domain CH64_3718 PF02590 Predicted SPOUT methyltransferase CH64_372 PF03462 PCRF domain CH64_372 PF00472 RF-1 domain CH64_3720 PF01467 Cytidylyltransferase-like CH64_3721 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH64_3721 PF06144 DNA polymerase III, delta subunit CH64_3722 PF04390 Lipopolysaccharide-assembly CH64_3723 PF13603 Leucyl-tRNA synthetase, Domain 2 CH64_3723 PF08264 Anticodon-binding domain of tRNA CH64_3723 PF00133 tRNA synthetases class I (I, L, M and V) CH64_3724 PF07295 Zinc-ribbon containing domain CH64_3725 PF00005 ABC transporter CH64_3726 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3727 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3728 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_373 PF13847 Methyltransferase domain CH64_373 PF17827 PrmC N-terminal domain CH64_3730 PF00795 Carbon-nitrogen hydrolase CH64_3731 PF00571 CBS domain CH64_3731 PF03471 Transporter associated domain CH64_3732 PF02130 Uncharacterized protein family UPF0054 CH64_3733 PF02562 PhoH-like protein CH64_3734 PF04055 Radical SAM superfamily CH64_3734 PF01938 TRAM domain CH64_3734 PF00919 Uncharacterized protein family UPF0004 CH64_3735 PF01494 FAD binding domain CH64_374 PF04247 Invasion gene expression up-regulator, SirB CH64_3743 PF13537 Glutamine amidotransferase domain CH64_3743 PF00733 Asparagine synthase CH64_3744 PF13344 Haloacid dehalogenase-like hydrolase CH64_3745 PF01047 MarR family CH64_3745 PF00480 ROK family CH64_3746 PF01979 Amidohydrolase family CH64_3747 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH64_3748 PF02378 Phosphotransferase system, EIIC CH64_3748 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH64_3748 PF00367 phosphotransferase system, EIIB CH64_3749 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH64_3749 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH64_375 PF13369 Transglutaminase-like superfamily CH64_3750 PF03573 outer membrane porin, OprD family CH64_3751 PF13982 YbfN-like lipoprotein CH64_3752 PF02838 Glycosyl hydrolase family 20, domain 2 CH64_3752 PF00728 Glycosyl hydrolase family 20, catalytic domain CH64_3752 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH64_3752 PF03173 Putative carbohydrate binding domain CH64_3753 PF01475 Ferric uptake regulator family CH64_3755 PF00258 Flavodoxin CH64_3756 PF00672 HAMP domain CH64_3756 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_3756 PF02203 Tar ligand binding domain homologue CH64_3757 PF01402 Ribbon-helix-helix protein, copG family CH64_3758 PF12697 Alpha/beta hydrolase family CH64_3759 PF03925 SeqA protein C-terminal domain CH64_3759 PF17206 SeqA protein N-terminal domain CH64_376 PF00793 DAHP synthetase I family CH64_3760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH64_3760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH64_3760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH64_3760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH64_3764 PF00072 Response regulator receiver domain CH64_3764 PF00486 Transcriptional regulatory protein, C terminal CH64_3766 PF13493 Domain of unknown function (DUF4118) CH64_3766 PF13492 GAF domain CH64_3766 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_3766 PF00512 His Kinase A (phospho-acceptor) domain CH64_3766 PF02702 Osmosensitive K+ channel His kinase sensor domain CH64_3767 PF02669 K+-transporting ATPase, c chain CH64_3769 PF03814 Potassium-transporting ATPase A subunit CH64_377 PF01740 STAS domain CH64_377 PF00916 Sulfate permease family CH64_3770 PF10725 Protein of unknown function (DUF2517) CH64_3771 PF08349 Protein of unknown function (DUF1722) CH64_3772 PF00875 DNA photolyase CH64_3772 PF03441 FAD binding domain of DNA photolyase CH64_3773 PF02112 cAMP phosphodiesterases class-II CH64_3774 PF01784 NIF3 (NGG1p interacting factor 3) CH64_3775 PF02682 Carboxyltransferase domain, subdomain C and D CH64_3776 PF02626 Carboxyltransferase domain, subdomain A and B CH64_3777 PF03746 LamB/YcsF family CH64_378 PF00990 Diguanylate cyclase, GGDEF domain CH64_378 PF07694 5TMR of 5TMR-LYT CH64_3780 PF01470 Pyroglutamyl peptidase CH64_3781 PF00285 Citrate synthase, C-terminal domain CH64_3782 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH64_3783 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH64_3784 PF00890 FAD binding domain CH64_3784 PF02910 Fumarate reductase flavoprotein C-term CH64_3785 PF13085 2Fe-2S iron-sulfur cluster binding domain CH64_3786 PF16870 2-oxoglutarate dehydrogenase C-terminal CH64_3786 PF16078 2-oxoglutarate dehydrogenase N-terminus CH64_3786 PF02779 Transketolase, pyrimidine binding domain CH64_3786 PF00676 Dehydrogenase E1 component CH64_3787 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH64_3787 PF00364 Biotin-requiring enzyme CH64_3787 PF02817 e3 binding domain CH64_3788 PF00549 CoA-ligase CH64_3788 PF08442 ATP-grasp domain CH64_3789 PF00549 CoA-ligase CH64_3789 PF02629 CoA binding domain CH64_3790 PF00149 Calcineurin-like phosphoesterase CH64_3790 PF02872 5'-nucleotidase, C-terminal domain CH64_3791 PF01654 Cytochrome bd terminal oxidase subunit I CH64_3792 PF02322 Cytochrome bd terminal oxidase subunit II CH64_3793 PF08173 Membrane bound YbgT-like protein CH64_3794 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH64_3795 PF03061 Thioesterase superfamily CH64_3796 PF01618 MotA/TolQ/ExbB proton channel family CH64_3797 PF02472 Biopolymer transport protein ExbD/TolR CH64_3798 PF06519 TolA C-terminal CH64_3798 PF06519 TolA C-terminal CH64_3799 PF07676 WD40-like Beta Propeller Repeat CH64_3799 PF04052 TolB amino-terminal domain CH64_380 PF03009 Glycerophosphoryl diester phosphodiesterase family CH64_3800 PF00691 OmpA family CH64_3801 PF16331 TolA binding protein trimerisation CH64_3801 PF13174 Tetratricopeptide repeat CH64_3806 PF02445 Quinolinate synthetase A protein CH64_3807 PF04973 Nicotinamide mononucleotide transporter CH64_3808 PF01545 Cation efflux family CH64_3809 PF00793 DAHP synthetase I family CH64_3810 PF00300 Histidine phosphatase superfamily (branch 1) CH64_3812 PF01263 Aldose 1-epimerase CH64_3813 PF10509 Galactokinase galactose-binding signature CH64_3813 PF08544 GHMP kinases C terminal CH64_3813 PF00288 GHMP kinases N terminal domain CH64_3814 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH64_3814 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH64_3815 PF16363 GDP-mannose 4,6 dehydratase CH64_3817 PF00005 ABC transporter CH64_3818 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_3818 PF03459 TOBE domain CH64_3819 PF10766 Multidrug efflux pump-associated protein AcrZ CH64_382 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH64_3821 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3822 PF00005 ABC transporter CH64_3822 PF03459 TOBE domain CH64_3824 PF10282 Lactonase, 7-bladed beta-propeller CH64_3825 PF00202 Aminotransferase class-III CH64_3826 PF06968 Biotin and Thiamin Synthesis associated domain CH64_3826 PF04055 Radical SAM superfamily CH64_3827 PF00155 Aminotransferase class I and II CH64_3828 PF08241 Methyltransferase domain CH64_383 PF02811 PHP domain CH64_3830 PF08402 TOBE domain CH64_3830 PF00005 ABC transporter CH64_3831 PF00271 Helicase conserved C-terminal domain CH64_3831 PF04851 Type III restriction enzyme, res subunit CH64_3831 PF02151 UvrB/uvrC motif CH64_3831 PF12344 Ultra-violet resistance protein B CH64_3831 PF17757 UvrB interaction domain CH64_3832 PF09905 DNA-binding protein VF530 CH64_3833 PF01933 Uncharacterised protein family UPF0052 CH64_3834 PF06463 Molybdenum Cofactor Synthesis C CH64_3834 PF04055 Radical SAM superfamily CH64_3835 PF01967 MoaC family CH64_3836 PF02597 ThiS family CH64_3837 PF02391 MoaE protein CH64_3838 PF01027 Inhibitor of apoptosis-promoting Bax1 CH64_384 PF02613 Nitrate reductase delta subunit CH64_3841 PF00005 ABC transporter CH64_3842 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_3843 PF00440 Bacterial regulatory proteins, tetR family CH64_3843 PF09209 Tetracyclin repressor-like, C-terminal domain CH64_3844 PF00270 DEAD/DEAH box helicase CH64_3844 PF00271 Helicase conserved C-terminal domain CH64_3845 PF01207 Dihydrouridine synthase (Dus) CH64_3846 PF03448 MgtE intracellular N domain CH64_3846 PF01769 Divalent cation transporter CH64_3846 PF00571 CBS domain CH64_3848 PF00768 D-alanyl-D-alanine carboxypeptidase CH64_3849 PF01565 FAD binding domain CH64_3849 PF09330 D-lactate dehydrogenase, membrane binding CH64_385 PF07273 Protein of unknown function (DUF1439) CH64_3850 PF01928 CYTH domain CH64_3851 PF01844 HNH endonuclease CH64_3853 PF04226 Transglycosylase associated protein CH64_3854 PF07308 Protein of unknown function (DUF1456) CH64_3855 PF13458 Periplasmic binding protein CH64_3856 PF02653 Branched-chain amino acid transport system / permease component CH64_3857 PF02653 Branched-chain amino acid transport system / permease component CH64_3858 PF00005 ABC transporter CH64_3858 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH64_3859 PF00005 ABC transporter CH64_386 PF07690 Major Facilitator Superfamily CH64_3860 PF00581 Rhodanese-like domain CH64_3863 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH64_3864 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3865 PF00005 ABC transporter CH64_3866 PF00528 Binding-protein-dependent transport system inner membrane component CH64_3868 PF00892 EamA-like transporter family CH64_3869 PF00267 Gram-negative porin CH64_387 PF13302 Acetyltransferase (GNAT) domain CH64_3870 PF06733 DEAD_2 CH64_3870 PF00270 DEAD/DEAH box helicase CH64_3870 PF13307 Helicase C-terminal domain CH64_3871 PF00230 Major intrinsic protein CH64_3872 PF02885 Glycosyl transferase family, helical bundle domain CH64_3876 PF05971 RNA methyltransferase CH64_3877 PF13426 PAS domain CH64_3877 PF08447 PAS fold CH64_3877 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_3878 PF00005 ABC transporter CH64_3879 PF00528 Binding-protein-dependent transport system inner membrane component CH64_388 PF04337 Protein of unknown function, DUF480 CH64_3880 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_3881 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH64_3882 PF00210 Ferritin-like domain CH64_3883 PF13847 Methyltransferase domain CH64_3885 PF00892 EamA-like transporter family CH64_3886 PF13505 Outer membrane protein beta-barrel domain CH64_389 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH64_3890 PF12848 ABC transporter CH64_3890 PF00005 ABC transporter CH64_3891 PF00899 ThiF family CH64_3892 PF03453 MoeA N-terminal region (domain I and II) CH64_3892 PF03454 MoeA C-terminal region (domain IV) CH64_3892 PF00994 Probable molybdopterin binding domain CH64_3895 PF00005 ABC transporter CH64_390 PF03023 Lipid II flippase MurJ CH64_391 PF05746 DALR anticodon binding domain CH64_391 PF00750 tRNA synthetases class I (R) CH64_391 PF03485 Arginyl tRNA synthetase N terminal domain CH64_392 PF06185 YecM protein CH64_393 PF03932 CutC family CH64_394 PF08003 Protein of unknown function (DUF1698) CH64_395 PF13649 Methyltransferase domain CH64_396 PF01124 MAPEG family CH64_397 PF01904 Protein of unknown function DUF72 CH64_398 PF00857 Isochorismatase family CH64_399 PF01336 OB-fold nucleic acid binding domain CH64_399 PF00152 tRNA synthetases class II (D, K and N) CH64_399 PF02938 GAD domain CH64_4 PF00107 Zinc-binding dehydrogenase CH64_4 PF08240 Alcohol dehydrogenase GroES-like domain CH64_40 PF01588 Putative tRNA binding domain CH64_40 PF09334 tRNA synthetases class I (M) CH64_400 PF00293 NUDIX domain CH64_401 PF01709 Transcriptional regulator CH64_403 PF02075 Crossover junction endodeoxyribonuclease RuvC CH64_404 PF01330 RuvA N terminal domain CH64_404 PF07499 RuvA, C-terminal domain CH64_405 PF05491 RuvB C-terminal winged helix domain CH64_405 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH64_405 PF17864 RuvB AAA lid domain CH64_406 PF00854 POT family CH64_407 PF00950 ABC 3 transport family CH64_408 PF00005 ABC transporter CH64_409 PF01297 Zinc-uptake complex component A periplasmic CH64_41 PF10609 NUBPL iron-transfer P-loop NTPase CH64_410 PF01551 Peptidase family M23 CH64_410 PF08525 Opacity-associated protein A N-terminal motif CH64_410 PF01476 LysM domain CH64_411 PF03279 Bacterial lipid A biosynthesis acyltransferase CH64_412 PF00224 Pyruvate kinase, barrel domain CH64_412 PF02887 Pyruvate kinase, alpha/beta domain CH64_413 PF01418 Helix-turn-helix domain, rpiR family CH64_413 PF01380 SIS domain CH64_414 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH64_414 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH64_415 PF01081 KDPG and KHG aldolase CH64_416 PF00893 Small Multidrug Resistance protein CH64_417 PF00893 Small Multidrug Resistance protein CH64_418 PF01042 Endoribonuclease L-PSP CH64_419 PF04851 Type III restriction enzyme, res subunit CH64_419 PF13307 Helicase C-terminal domain CH64_420 PF00814 Glycoprotease family CH64_421 PF03843 Outer membrane lipoprotein Slp family CH64_422 PF13193 AMP-binding enzyme C-terminal domain CH64_422 PF00501 AMP-binding enzyme CH64_423 PF00570 HRDC domain CH64_423 PF01612 3'-5' exonuclease CH64_424 PF03776 Septum formation topological specificity factor MinE CH64_425 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH64_426 PF03775 Septum formation inhibitor MinC, C-terminal domain CH64_426 PF05209 Septum formation inhibitor MinC, N-terminal domain CH64_428 PF05166 YcgL domain CH64_429 PF13406 Transglycosylase SLT domain CH64_43 PF00485 Phosphoribulokinase / Uridine kinase family CH64_430 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH64_431 PF03692 Putative zinc- or iron-chelating domain CH64_434 PF00132 Bacterial transferase hexapeptide (six repeats) CH64_434 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH64_435 PF02600 Disulfide bond formation protein DsbB CH64_436 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH64_437 PF00392 Bacterial regulatory proteins, gntR family CH64_437 PF07840 FadR C-terminal domain CH64_438 PF04293 SpoVR like protein CH64_439 PF01266 FAD dependent oxidoreductase CH64_44 PF00692 dUTPase CH64_440 PF01168 Alanine racemase, N-terminal domain CH64_440 PF00842 Alanine racemase, C-terminal domain CH64_441 PF07690 Major Facilitator Superfamily CH64_442 PF00563 EAL domain CH64_442 PF00990 Diguanylate cyclase, GGDEF domain CH64_442 PF13426 PAS domain CH64_443 PF05726 Pirin C-terminal cupin domain CH64_443 PF02678 Pirin CH64_444 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_444 PF03466 LysR substrate binding domain CH64_446 PF04285 Protein of unknown function (DUF444) CH64_447 PF08298 PrkA AAA domain CH64_447 PF06798 PrkA serine protein kinase C-terminal domain CH64_448 PF06629 MltA-interacting protein MipA CH64_449 PF01263 Aldose 1-epimerase CH64_45 PF05170 AsmA family CH64_450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH64_450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH64_451 PF01641 SelR domain CH64_452 PF07023 Protein of unknown function (DUF1315) CH64_453 PF00857 Isochorismatase family CH64_454 PF17763 Glutaminase/Asparaginase C-terminal domain CH64_454 PF00710 Asparaginase, N-terminal CH64_455 PF01343 Peptidase family S49 CH64_456 PF00881 Nitroreductase family CH64_457 PF00586 AIR synthase related protein, N-terminal domain CH64_457 PF02769 AIR synthase related protein, C-terminal domain CH64_458 PF01131 DNA topoisomerase CH64_458 PF01751 Toprim domain CH64_459 PF00293 NUDIX domain CH64_46 PF03606 C4-dicarboxylate anaerobic carrier CH64_460 PF07383 Protein of unknown function (DUF1496) CH64_461 PF03372 Endonuclease/Exonuclease/phosphatase family CH64_462 PF03466 LysR substrate binding domain CH64_462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_466 PF00551 Formyl transferase CH64_466 PF01842 ACT domain CH64_467 PF02810 SEC-C motif CH64_468 PF00583 Acetyltransferase (GNAT) family CH64_469 PF01734 Patatin-like phospholipase CH64_47 PF00571 CBS domain CH64_47 PF03741 Integral membrane protein TerC family CH64_47 PF03471 Transporter associated domain CH64_470 PF00072 Response regulator receiver domain CH64_471 PF00816 H-NS histone family CH64_472 PF00265 Thymidine kinase CH64_473 PF00465 Iron-containing alcohol dehydrogenase CH64_473 PF00171 Aldehyde dehydrogenase family CH64_475 PF01914 MarC family integral membrane protein CH64_476 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_477 PF00528 Binding-protein-dependent transport system inner membrane component CH64_478 PF12911 N-terminal TM domain of oligopeptide transport permease C CH64_478 PF00528 Binding-protein-dependent transport system inner membrane component CH64_479 PF00005 ABC transporter CH64_479 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH64_48 PF00483 Nucleotidyl transferase CH64_48 PF01050 Mannose-6-phosphate isomerase CH64_480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH64_480 PF00005 ABC transporter CH64_481 PF04269 Protein of unknown function, DUF440 CH64_482 PF13091 PLD-like domain CH64_482 PF13396 Phospholipase_D-nuclease N-terminal CH64_483 PF00563 EAL domain CH64_485 PF03795 YCII-related domain CH64_486 PF03544 Gram-negative bacterial TonB protein C-terminal CH64_487 PF03061 Thioesterase superfamily CH64_488 PF04279 Intracellular septation protein A CH64_49 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH64_49 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH64_49 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH64_49 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH64_491 PF03922 OmpW family CH64_495 PF00290 Tryptophan synthase alpha chain CH64_496 PF00291 Pyridoxal-phosphate dependent enzyme CH64_497 PF00218 Indole-3-glycerol phosphate synthase CH64_497 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH64_498 PF00591 Glycosyl transferase family, a/b domain CH64_498 PF02885 Glycosyl transferase family, helical bundle domain CH64_499 PF00117 Glutamine amidotransferase class-I CH64_5 PF03466 LysR substrate binding domain CH64_5 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_500 PF00425 chorismate binding enzyme CH64_500 PF04715 Anthranilate synthase component I, N terminal region CH64_504 PF00849 RNA pseudouridylate synthase CH64_504 PF01479 S4 domain CH64_506 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH64_507 PF00106 short chain dehydrogenase CH64_508 PF01343 Peptidase family S49 CH64_508 PF08496 Peptidase family S49 N-terminal CH64_509 PF10692 Protein of unknown function (DUF2498) CH64_51 PF14524 Wzt C-terminal domain CH64_51 PF00005 ABC transporter CH64_510 PF01396 Topoisomerase DNA binding C4 zinc finger CH64_510 PF01751 Toprim domain CH64_510 PF08272 Topoisomerase I zinc-ribbon-like CH64_510 PF01131 DNA topoisomerase CH64_511 PF03466 LysR substrate binding domain CH64_511 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_515 PF00330 Aconitase family (aconitate hydratase) CH64_515 PF00694 Aconitase C-terminal domain CH64_516 PF00925 GTP cyclohydrolase II CH64_517 PF01569 PAP2 superfamily CH64_518 PF06305 Lipopolysaccharide assembly protein A domain CH64_519 PF18073 Rubredoxin metal binding domain CH64_52 PF08241 Methyltransferase domain CH64_521 PF07338 Protein of unknown function (DUF1471) CH64_522 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH64_523 PF01253 Translation initiation factor SUI1 CH64_524 PF05433 Glycine zipper 2TM domain CH64_525 PF00596 Class II Aldolase and Adducin N-terminal domain CH64_527 PF00455 DeoR C terminal sensor domain CH64_527 PF08220 DeoR-like helix-turn-helix domain CH64_528 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH64_529 PF04328 Selenoprotein, putative CH64_530 PF13722 5TM C-terminal transporter carbon starvation CstA CH64_530 PF02554 Carbon starvation protein CstA CH64_531 PF08206 Ribonuclease B OB domain CH64_531 PF00575 S1 RNA binding domain CH64_531 PF00773 RNB domain CH64_532 PF00384 Molybdopterin oxidoreductase CH64_533 PF00730 HhH-GPD superfamily base excision DNA repair protein CH64_533 PF10576 Iron-sulfur binding domain of endonuclease III CH64_533 PF00633 Helix-hairpin-helix motif CH64_534 PF02508 Rnf-Nqr subunit, membrane protein CH64_535 PF04205 FMN-binding domain CH64_536 PF03116 NQR2, RnfD, RnfE family CH64_537 PF06445 GyrI-like small molecule binding domain CH64_537 PF12833 Helix-turn-helix domain CH64_538 PF10531 SLBB domain CH64_538 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH64_538 PF13237 4Fe-4S dicluster domain CH64_538 PF13375 RnfC Barrel sandwich hybrid domain CH64_539 PF04060 Putative Fe-S cluster CH64_54 PF16363 GDP-mannose 4,6 dehydratase CH64_540 PF02508 Rnf-Nqr subunit, membrane protein CH64_541 PF10754 Protein of unknown function (DUF2569) CH64_542 PF01268 Formate--tetrahydrofolate ligase CH64_544 PF03412 Peptidase C39 family CH64_544 PF00664 ABC transporter transmembrane region CH64_544 PF00005 ABC transporter CH64_545 PF13533 Biotin-lipoyl like CH64_546 PF00664 ABC transporter transmembrane region CH64_546 PF03412 Peptidase C39 family CH64_546 PF00005 ABC transporter CH64_547 PF11762 L-arabinose isomerase C-terminal domain CH64_547 PF02610 L-arabinose isomerase CH64_548 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH64_549 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH64_55 PF16363 GDP-mannose 4,6 dehydratase CH64_550 PF00005 ABC transporter CH64_551 PF02653 Branched-chain amino acid transport system / permease component CH64_552 PF02311 AraC-like ligand binding domain CH64_552 PF12833 Helix-turn-helix domain CH64_553 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH64_553 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH64_554 PF13593 SBF-like CPA transporter family (DUF4137) CH64_555 PF00962 Adenosine/AMP deaminase CH64_556 PF00155 Aminotransferase class I and II CH64_557 PF00367 phosphotransferase system, EIIB CH64_557 PF02378 Phosphotransferase system, EIIC CH64_558 PF00356 Bacterial regulatory proteins, lacI family CH64_558 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH64_559 PF06097 Bacterial protein of unknown function (DUF945) CH64_560 PF01238 Phosphomannose isomerase type I CH64_561 PF00206 Lyase CH64_561 PF10415 Fumarase C C-terminus CH64_562 PF05472 DNA replication terminus site-binding protein (Ter protein) CH64_565 PF07690 Major Facilitator Superfamily CH64_566 PF03466 LysR substrate binding domain CH64_566 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_567 PF00480 ROK family CH64_569 PF00654 Voltage gated chloride channel CH64_57 PF13439 Glycosyltransferase Family 4 CH64_57 PF00534 Glycosyl transferases group 1 CH64_570 PF06649 Protein of unknown function (DUF1161) CH64_571 PF06932 Protein of unknown function (DUF1283) CH64_572 PF01022 Bacterial regulatory protein, arsR family CH64_573 PF02040 Arsenical pump membrane protein CH64_574 PF03960 ArsC family CH64_575 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CH64_576 PF00106 short chain dehydrogenase CH64_577 PF07690 Major Facilitator Superfamily CH64_578 PF07338 Protein of unknown function (DUF1471) CH64_58 PF00483 Nucleotidyl transferase CH64_588 PF02798 Glutathione S-transferase, N-terminal domain CH64_59 PF00483 Nucleotidyl transferase CH64_590 PF01037 Lrp/AsnC ligand binding domain CH64_591 PF00528 Binding-protein-dependent transport system inner membrane component CH64_592 PF00528 Binding-protein-dependent transport system inner membrane component CH64_593 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH64_595 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH64_595 PF01048 Phosphorylase superfamily CH64_599 PF01510 N-acetylmuramoyl-L-alanine amidase CH64_6 PF06779 Uncharacterised MFS-type transporter YbfB CH64_60 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH64_60 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH64_601 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH64_601 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_601 PF00205 Thiamine pyrophosphate enzyme, central domain CH64_602 PF01842 ACT domain CH64_604 PF13419 Haloacid dehalogenase-like hydrolase CH64_606 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_606 PF03466 LysR substrate binding domain CH64_609 PF07690 Major Facilitator Superfamily CH64_61 PF01502 Phosphoribosyl-AMP cyclohydrolase CH64_61 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH64_610 PF00294 pfkB family carbohydrate kinase CH64_611 PF00245 Alkaline phosphatase CH64_613 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH64_613 PF02753 Pili assembly chaperone PapD, C-terminal domain CH64_614 PF00577 Outer membrane usher protein CH64_614 PF13954 PapC N-terminal domain CH64_614 PF13953 PapC C-terminal domain CH64_617 PF06445 GyrI-like small molecule binding domain CH64_619 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH64_619 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH64_62 PF00977 Histidine biosynthesis protein CH64_620 PF13545 Crp-like helix-turn-helix domain CH64_620 PF00027 Cyclic nucleotide-binding domain CH64_621 PF00582 Universal stress protein family CH64_622 PF02233 NAD(P) transhydrogenase beta subunit CH64_623 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH64_623 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH64_623 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH64_624 PF07338 Protein of unknown function (DUF1471) CH64_625 PF13520 Amino acid permease CH64_627 PF00072 Response regulator receiver domain CH64_627 PF00486 Transcriptional regulatory protein, C terminal CH64_628 PF00672 HAMP domain CH64_628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_628 PF00512 His Kinase A (phospho-acceptor) domain CH64_629 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH64_63 PF00977 Histidine biosynthesis protein CH64_630 PF01740 STAS domain CH64_630 PF00916 Sulfate permease family CH64_632 PF00089 Trypsin CH64_634 PF05973 Phage derived protein Gp49-like (DUF891) CH64_635 PF00271 Helicase conserved C-terminal domain CH64_635 PF04408 Helicase associated domain (HA2) CH64_635 PF11898 Domain of unknown function (DUF3418) CH64_635 PF00270 DEAD/DEAH box helicase CH64_635 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH64_636 PF02525 Flavodoxin-like fold CH64_637 PF07027 Protein of unknown function (DUF1318) CH64_638 PF13617 YnbE-like lipoprotein CH64_639 PF11739 Dicarboxylate transport CH64_64 PF00117 Glutamine amidotransferase class-I CH64_641 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH64_641 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH64_642 PF03724 META domain CH64_643 PF03891 Domain of unknown function (DUF333) CH64_644 PF02308 MgtC family CH64_645 PF00893 Small Multidrug Resistance protein CH64_646 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH64_646 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH64_646 PF10371 Domain of unknown function CH64_646 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH64_646 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH64_647 PF01171 PP-loop family CH64_648 PF01544 CorA-like Mg2+ transporter protein CH64_65 PF00475 Imidazoleglycerol-phosphate dehydratase CH64_650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_652 PF13378 Enolase C-terminal domain-like CH64_652 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH64_653 PF00246 Zinc carboxypeptidase CH64_654 PF08534 Redoxin CH64_655 PF00158 Sigma-54 interaction domain CH64_655 PF18024 Helix-turn-helix domain CH64_658 PF05128 Domain of unknown function (DUF697) CH64_659 PF04317 YcjX-like family, DUF463 CH64_66 PF00155 Aminotransferase class I and II CH64_661 PF04024 PspC domain CH64_662 PF06667 Phage shock protein B CH64_663 PF04012 PspA/IM30 family CH64_664 PF00158 Sigma-54 interaction domain CH64_664 PF02954 Bacterial regulatory protein, Fis family CH64_665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_666 PF00528 Binding-protein-dependent transport system inner membrane component CH64_667 PF12911 N-terminal TM domain of oligopeptide transport permease C CH64_667 PF00528 Binding-protein-dependent transport system inner membrane component CH64_668 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH64_668 PF00005 ABC transporter CH64_669 PF00005 ABC transporter CH64_67 PF00815 Histidinol dehydrogenase CH64_671 PF03466 LysR substrate binding domain CH64_671 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_672 PF00854 POT family CH64_673 PF00753 Metallo-beta-lactamase superfamily CH64_675 PF04893 Yip1 domain CH64_676 PF11656 YjbD family (DUF3811) CH64_677 PF00043 Glutathione S-transferase, C-terminal domain CH64_677 PF02798 Glutathione S-transferase, N-terminal domain CH64_678 PF08543 Phosphomethylpyrimidine kinase CH64_679 PF01479 S4 domain CH64_679 PF00579 tRNA synthetases class I (W and Y) CH64_68 PF01634 ATP phosphoribosyltransferase CH64_68 PF08029 HisG, C-terminal domain CH64_680 PF01243 Pyridoxamine 5'-phosphate oxidase CH64_680 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH64_681 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH64_682 PF03702 Anhydro-N-acetylmuramic acid kinase CH64_683 PF05433 Glycine zipper 2TM domain CH64_684 PF01047 MarR family CH64_685 PF07869 Protein of unknown function (DUF1656) CH64_686 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_686 PF00529 HlyD membrane-fusion protein of T1SS CH64_687 PF04632 Fusaric acid resistance protein family CH64_688 PF00248 Aldo/keto reductase family CH64_689 PF06945 Protein of unknown function (DUF1289) CH64_69 PF01370 NAD dependent epimerase/dehydratase family CH64_690 PF08019 Phosphoethanolamine transferase EptA/EptB CH64_690 PF00884 Sulfatase CH64_691 PF00440 Bacterial regulatory proteins, tetR family CH64_691 PF16925 Tetracyclin repressor-like, C-terminal domain CH64_692 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH64_693 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH64_694 PF00929 Exonuclease CH64_695 PF00462 Glutaredoxin CH64_697 PF00877 NlpC/P60 family CH64_698 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH64_698 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH64_7 PF01227 GTP cyclohydrolase I CH64_70 PF02653 Branched-chain amino acid transport system / permease component CH64_700 PF00356 Bacterial regulatory proteins, lacI family CH64_701 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_701 PF03466 LysR substrate binding domain CH64_702 PF07690 Major Facilitator Superfamily CH64_704 PF00677 Lumazine binding domain CH64_705 PF01554 MatE CH64_71 PF00005 ABC transporter CH64_710 PF02887 Pyruvate kinase, alpha/beta domain CH64_710 PF00224 Pyruvate kinase, barrel domain CH64_711 PF04728 Lipoprotein leucine-zipper CH64_712 PF01476 LysM domain CH64_712 PF03734 L,D-transpeptidase catalytic domain CH64_712 PF17969 L,D-transpeptidase C-terminal domain CH64_713 PF02657 Fe-S metabolism associated domain CH64_714 PF00266 Aminotransferase class-V CH64_715 PF01458 Uncharacterized protein family (UPF0051) CH64_716 PF00005 ABC transporter CH64_717 PF01458 Uncharacterized protein family (UPF0051) CH64_718 PF01521 Iron-sulphur cluster biosynthesis CH64_719 PF03061 Thioesterase superfamily CH64_72 PF00465 Iron-containing alcohol dehydrogenase CH64_721 PF02913 FAD linked oxidases, C-terminal domain CH64_721 PF01565 FAD binding domain CH64_721 PF13183 4Fe-4S dicluster domain CH64_722 PF01594 AI-2E family transporter CH64_723 PF02896 PEP-utilising enzyme, TIM barrel domain CH64_723 PF00391 PEP-utilising enzyme, mobile domain CH64_723 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH64_724 PF03618 Kinase/pyrophosphorylase CH64_725 PF00793 DAHP synthetase I family CH64_726 PF07715 TonB-dependent Receptor Plug Domain CH64_726 PF00593 TonB dependent receptor CH64_727 PF05171 Haemin-degrading HemS.ChuX domain CH64_728 PF01497 Periplasmic binding protein CH64_729 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH64_730 PF03099 Biotin/lipoate A/B protein ligase family CH64_730 PF10437 Bacterial lipoate protein ligase C-terminus CH64_731 PF00877 NlpC/P60 family CH64_733 PF00892 EamA-like transporter family CH64_734 PF01522 Polysaccharide deacetylase CH64_735 PF02911 Formyl transferase, C-terminal domain CH64_735 PF01370 NAD dependent epimerase/dehydratase family CH64_735 PF00551 Formyl transferase CH64_736 PF00535 Glycosyl transferase family 2 CH64_737 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH64_738 PF00005 ABC transporter CH64_739 PF00255 Glutathione peroxidase CH64_74 PF13520 Amino acid permease CH64_740 PF01032 FecCD transport family CH64_743 PF00849 RNA pseudouridylate synthase CH64_744 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH64_745 PF00216 Bacterial DNA-binding protein CH64_746 PF03484 tRNA synthetase B5 domain CH64_746 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH64_746 PF01588 Putative tRNA binding domain CH64_746 PF03147 Ferredoxin-fold anticodon binding domain CH64_746 PF03483 B3/4 domain CH64_747 PF01409 tRNA synthetases class II core domain (F) CH64_747 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH64_748 PF00453 Ribosomal protein L20 CH64_749 PF01632 Ribosomal protein L35 CH64_75 PF08411 Exonuclease C-terminal CH64_75 PF00929 Exonuclease CH64_750 PF00707 Translation initiation factor IF-3, C-terminal domain CH64_750 PF05198 Translation initiation factor IF-3, N-terminal domain CH64_751 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH64_751 PF02824 TGS domain CH64_751 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH64_751 PF03129 Anticodon binding domain CH64_753 PF13619 KTSC domain CH64_754 PF04474 Protein of unknown function (DUF554) CH64_758 PF01914 MarC family integral membrane protein CH64_759 PF01464 Transglycosylase SLT domain CH64_760 PF01297 Zinc-uptake complex component A periplasmic CH64_761 PF00005 ABC transporter CH64_762 PF00950 ABC 3 transport family CH64_763 PF00950 ABC 3 transport family CH64_765 PF01642 Methylmalonyl-CoA mutase CH64_765 PF02310 B12 binding domain CH64_767 PF00378 Enoyl-CoA hydratase/isomerase CH64_768 PF03466 LysR substrate binding domain CH64_768 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH64_769 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH64_769 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH64_77 PF04632 Fusaric acid resistance protein family CH64_770 PF14002 YniB-like protein CH64_771 PF13419 Haloacid dehalogenase-like hydrolase CH64_772 PF07883 Cupin domain CH64_773 PF04962 KduI/IolB family CH64_775 PF06917 Periplasmic pectate lyase CH64_776 PF00528 Binding-protein-dependent transport system inner membrane component CH64_777 PF00528 Binding-protein-dependent transport system inner membrane component CH64_778 PF03459 TOBE domain CH64_778 PF00005 ABC transporter CH64_778 PF17912 MalK OB fold domain CH64_779 PF01547 Bacterial extracellular solute-binding protein CH64_78 PF04363 Protein of unknown function (DUF496) CH64_780 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH64_781 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH64_783 PF01510 N-acetylmuramoyl-L-alanine amidase CH64_784 PF09339 IclR helix-turn-helix domain CH64_784 PF01614 Bacterial transcriptional regulator CH64_785 PF14583 Oligogalacturonate lyase CH64_786 PF07690 Major Facilitator Superfamily CH64_788 PF01435 Peptidase family M48 CH64_789 PF17804 Tail specific protease N-terminal domain CH64_789 PF11818 C-terminal domain of tail specific protease (DUF3340) CH64_789 PF00595 PDZ domain CH64_789 PF03572 Peptidase family S41 CH64_79 PF02653 Branched-chain amino acid transport system / permease component CH64_792 PF13185 GAF domain CH64_793 PF04403 Paraquat-inducible protein A CH64_794 PF02470 MlaD protein CH64_795 PF00563 EAL domain CH64_795 PF01590 GAF domain CH64_795 PF00990 Diguanylate cyclase, GGDEF domain CH64_795 PF00360 Phytochrome region CH64_796 PF07351 Protein of unknown function (DUF1480) CH64_8 PF04235 Protein of unknown function (DUF418) CH64_80 PF02653 Branched-chain amino acid transport system / permease component CH64_801 PF14834 Glutathione S-transferase, C-terminal domain CH64_801 PF02798 Glutathione S-transferase, N-terminal domain CH64_804 PF03616 Sodium/glutamate symporter CH64_82 PF13407 Periplasmic binding protein domain CH64_820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH64_820 PF02805 Metal binding domain of Ada CH64_820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH64_820 PF12833 Helix-turn-helix domain CH64_824 PF00959 Phage lysozyme CH64_828 PF07102 Protein of unknown function (DUF1364) CH64_83 PF00155 Aminotransferase class I and II CH64_830 PF10709 Protein of unknown function (DUF2511) CH64_831 PF05425 Copper resistance protein D CH64_832 PF04234 CopC domain CH64_833 PF00210 Ferritin-like domain CH64_834 PF06440 DNA polymerase III, theta subunit CH64_835 PF00561 alpha/beta hydrolase fold CH64_836 PF00929 Exonuclease CH64_837 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH64_837 PF00326 Prolyl oligopeptidase family CH64_838 PF13995 YebF-like protein CH64_840 PF07130 YebG protein CH64_841 PF03880 DbpA RNA binding domain CH64_841 PF00271 Helicase conserved C-terminal domain CH64_841 PF00270 DEAD/DEAH box helicase CH64_842 PF02222 ATP-grasp domain CH64_843 PF03701 Uncharacterised protein family (UPF0181) CH64_844 PF00425 chorismate binding enzyme CH64_844 PF04715 Anthranilate synthase component I, N terminal region CH64_845 PF00293 NUDIX domain CH64_846 PF03315 Serine dehydratase beta chain CH64_846 PF03313 Serine dehydratase alpha chain CH64_847 PF03741 Integral membrane protein TerC family CH64_847 PF03471 Transporter associated domain CH64_848 PF03610 PTS system fructose IIA component CH64_848 PF03830 PTS system sorbose subfamily IIB component CH64_849 PF03609 PTS system sorbose-specific iic component CH64_85 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH64_85 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH64_850 PF03613 PTS system mannose/fructose/sorbose family IID component CH64_851 PF06173 Protein of unknown function (DUF986) CH64_852 PF02659 Putative manganese efflux pump CH64_853 PF07715 TonB-dependent Receptor Plug Domain CH64_853 PF00593 TonB dependent receptor CH64_855 PF13847 Methyltransferase domain CH64_857 PF00313 'Cold-shock' DNA-binding domain CH64_858 PF10736 Protein of unknown function (DUF2627) CH64_859 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH64_86 PF03186 CobD/Cbib protein CH64_860 PF00324 Amino acid permease CH64_863 PF13974 YebO-like protein CH64_864 PF13996 YobH-like protein CH64_865 PF10964 Protein of unknown function (DUF2766) CH64_868 PF12833 Helix-turn-helix domain CH64_87 PF02570 Precorrin-8X methylmutase CH64_870 PF13520 Amino acid permease CH64_872 PF00005 ABC transporter CH64_872 PF00664 ABC transporter transmembrane region CH64_874 PF08666 SAF domain CH64_874 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH64_875 PF07690 Major Facilitator Superfamily CH64_876 PF00701 Dihydrodipicolinate synthetase family CH64_878 PF00990 Diguanylate cyclase, GGDEF domain CH64_878 PF01590 GAF domain CH64_878 PF00563 EAL domain CH64_878 PF00360 Phytochrome region CH64_879 PF06411 HdeA/HdeB family CH64_88 PF01888 CbiD CH64_880 PF07007 Lysozyme inhibitor LprI CH64_881 PF10114 Sensory domain found in PocR CH64_881 PF12833 Helix-turn-helix domain CH64_882 PF00892 EamA-like transporter family CH64_884 PF01638 HxlR-like helix-turn-helix CH64_885 PF05368 NmrA-like family CH64_886 PF01053 Cys/Met metabolism PLP-dependent enzyme CH64_887 PF00529 HlyD membrane-fusion protein of T1SS CH64_887 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH64_888 PF11742 Protein of unknown function (DUF3302) CH64_889 PF11769 Protein of unknown function (DUF3313) CH64_89 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH64_890 PF08447 PAS fold CH64_890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH64_892 PF00356 Bacterial regulatory proteins, lacI family CH64_892 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH64_893 PF08244 Glycosyl hydrolases family 32 C terminal CH64_893 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH64_894 PF01306 LacY proton/sugar symporter CH64_898 PF00180 Isocitrate/isopropylmalate dehydrogenase CH64_899 PF00849 RNA pseudouridylate synthase CH64_9 PF00356 Bacterial regulatory proteins, lacI family CH64_90 PF05175 Methyltransferase small domain CH64_900 PF00293 NUDIX domain CH64_902 PF04356 Protein of unknown function (DUF489) CH64_903 PF08328 Adenylosuccinate lyase C-terminal CH64_903 PF00206 Lyase CH64_904 PF00486 Transcriptional regulatory protein, C terminal CH64_904 PF00072 Response regulator receiver domain CH64_905 PF08918 PhoQ Sensor CH64_905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_906 PF08007 Cupin superfamily protein CH64_907 PF07687 Peptidase dimerisation domain CH64_907 PF01546 Peptidase family M20/M25/M40 CH64_908 PF02146 Sir2 family CH64_909 PF00480 ROK family CH64_91 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH64_910 PF12704 MacB-like periplasmic core domain CH64_910 PF02687 FtsX-like permease family CH64_911 PF00005 ABC transporter CH64_912 PF12704 MacB-like periplasmic core domain CH64_912 PF02687 FtsX-like permease family CH64_913 PF17757 UvrB interaction domain CH64_913 PF03461 TRCF domain CH64_913 PF00271 Helicase conserved C-terminal domain CH64_913 PF00270 DEAD/DEAH box helicase CH64_913 PF02559 CarD-like/TRCF domain CH64_914 PF05433 Glycine zipper 2TM domain CH64_915 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH64_916 PF05728 Uncharacterised protein family (UPF0227) CH64_917 PF00933 Glycosyl hydrolase family 3 N terminal domain CH64_918 PF01636 Phosphotransferase enzyme family CH64_919 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH64_919 PF13036 Peptidoglycan-synthase activator LpoB CH64_92 PF11761 Cobalamin biosynthesis central region CH64_92 PF11760 Cobalamin synthesis G N-terminal CH64_92 PF01890 Cobalamin synthesis G C-terminus CH64_920 PF07233 Protein of unknown function (DUF1425) CH64_921 PF01230 HIT domain CH64_922 PF08501 Shikimate dehydrogenase substrate binding domain CH64_923 PF12793 Sugar transport-related sRNA regulator N-term CH64_923 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH64_924 PF02378 Phosphotransferase system, EIIC CH64_924 PF00367 phosphotransferase system, EIIB CH64_925 PF01026 TatD related DNase CH64_926 PF09115 DNA polymerase III, delta subunit, C terminal CH64_927 PF02223 Thymidylate kinase CH64_928 PF02618 YceG-like family CH64_929 PF01063 Amino-transferase class IV CH64_93 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH64_930 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_930 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_931 PF00550 Phosphopantetheine attachment site CH64_933 PF00698 Acyl transferase domain CH64_934 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH64_934 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH64_935 PF02504 Fatty acid synthesis protein CH64_936 PF01783 Ribosomal L32p protein family CH64_937 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH64_938 PF02545 Maf-like protein CH64_939 PF00849 RNA pseudouridylate synthase CH64_939 PF01479 S4 domain CH64_94 PF02571 Precorrin-6x reductase CbiJ/CobK CH64_941 PF12111 Polyribonucleotide phosphorylase C terminal CH64_941 PF10150 Ribonuclease E/G family CH64_941 PF00575 S1 RNA binding domain CH64_941 PF00575 S1 RNA binding domain CH64_941 PF12111 Polyribonucleotide phosphorylase C terminal CH64_941 PF10150 Ribonuclease E/G family CH64_942 PF03992 Antibiotic biosynthesis monooxygenase CH64_943 PF01979 Amidohydrolase family CH64_944 PF06183 DinI-like family CH64_945 PF13991 BssS protein family CH64_946 PF01266 FAD dependent oxidoreductase CH64_947 PF00196 Bacterial regulatory proteins, luxR family CH64_948 PF01594 AI-2E family transporter CH64_95 PF06180 Cobalt chelatase (CbiK) CH64_951 PF01568 Molydopterin dinucleotide binding domain CH64_951 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH64_951 PF00384 Molybdopterin oxidoreductase CH64_952 PF03916 Polysulphide reductase, NrfD CH64_953 PF13247 4Fe-4S dicluster domain CH64_954 PF00512 His Kinase A (phospho-acceptor) domain CH64_954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH64_955 PF00072 Response regulator receiver domain CH64_955 PF00196 Bacterial regulatory proteins, luxR family CH64_956 PF03279 Bacterial lipid A biosynthesis acyltransferase CH64_957 PF07681 DoxX CH64_958 PF07690 Major Facilitator Superfamily CH64_959 PF00854 POT family CH64_96 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH64_961 PF07119 Protein of unknown function (DUF1375) CH64_962 PF00535 Glycosyl transferase family 2 CH64_963 PF04349 Periplasmic glucan biosynthesis protein, MdoG CH64_964 PF01757 Acyltransferase family CH64_966 PF02080 TrkA-C domain CH64_966 PF03471 Transporter associated domain CH64_966 PF00999 Sodium/hydrogen exchanger family CH64_967 PF06983 3-demethylubiquinone-9 3-methyltransferase CH64_969 PF03472 Autoinducer binding domain CH64_969 PF00196 Bacterial regulatory proteins, luxR family CH64_97 PF01891 Cobalt uptake substrate-specific transmembrane region CH64_970 PF00765 Autoinducer synthase CH64_972 PF03918 Cytochrome C biogenesis protein CH64_973 PF08534 Redoxin CH64_974 PF01578 Cytochrome C assembly protein CH64_974 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH64_975 PF03916 Polysulphide reductase, NrfD CH64_976 PF13247 4Fe-4S dicluster domain CH64_976 PF00037 4Fe-4S binding domain CH64_977 PF13435 Cytochrome c554 and c-prime CH64_977 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CH64_978 PF02335 Cytochrome c552 CH64_98 PF02553 Cobalt transport protein component CbiN CH64_981 PF04358 DsrC like protein CH64_982 PF00708 Acylphosphatase CH64_983 PF17785 PUA-like domain CH64_983 PF10672 S-adenosylmethionine-dependent methyltransferase CH64_984 PF08755 Hemimethylated DNA-binding protein YccV like CH64_985 PF13380 CoA binding domain CH64_986 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH64_987 PF02142 MGS-like domain CH64_988 PF00580 UvrD/REP helicase N-terminal domain CH64_988 PF12462 DNA helicase IV / RNA helicase N terminal CH64_988 PF13361 UvrD-like helicase C-terminal domain CH64_989 PF03733 Inner membrane component domain CH64_99 PF02361 Cobalt transport protein CH64_990 PF12805 FUSC-like inner membrane protein yccS CH64_991 PF04994 TfoX C-terminal domain CH64_991 PF04993 TfoX N-terminal domain CH64_992 PF03846 Cell division inhibitor SulA CH64_993 PF00691 OmpA family CH64_993 PF01389 OmpA-like transmembrane domain CH64_994 PF17414 MatP C-terminal ribbon-helix-helix domain CH64_994 PF06303 MatP N-terminal domain CH64_995 PF13654 AAA domain CH64_995 PF05362 Lon protease (S16) C-terminal proteolytic domain CH64_996 PF07977 FabA-like domain CH64_998 PF02801 Beta-ketoacyl synthase, C-terminal domain CH64_998 PF00109 Beta-ketoacyl synthase, N-terminal domain CH64_999 PF03886 ABC-type transport auxiliary lipoprotein component