locus-tag class description LGL88_00005 PF00308 Bacterial dnaA protein LGL88_00005 PF08299 Bacterial dnaA protein helix-turn-helix LGL88_00005 PF11638 DnaA N-terminal domain LGL88_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LGL88_00010 PF02767 DNA polymerase III beta subunit, central domain LGL88_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LGL88_00015 PF02463 RecF/RecN/SMC N terminal domain LGL88_00020 PF01751 Toprim domain LGL88_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LGL88_00020 PF00204 DNA gyrase B LGL88_00020 PF18053 DNA gyrase B subunit insert domain LGL88_00030 PF12566 Protein of unknown function (DUF3748) LGL88_00030 PF07676 WD40-like Beta Propeller Repeat LGL88_00035 PF07119 Protein of unknown function (DUF1375) LGL88_00040 PF00011 Hsp20/alpha crystallin family LGL88_00045 PF00011 Hsp20/alpha crystallin family LGL88_00050 PF02080 TrkA-C domain LGL88_00050 PF06826 Predicted Permease Membrane Region LGL88_00055 PF00155 Aminotransferase class I and II LGL88_00060 PF13488 Glycine zipper LGL88_00060 PF00691 OmpA family LGL88_00080 PF03352 Methyladenine glycosylase LGL88_00090 PF02091 Glycyl-tRNA synthetase alpha subunit LGL88_00095 PF05746 DALR anticodon binding domain LGL88_00095 PF02092 Glycyl-tRNA synthetase beta subunit LGL88_00100 PF11254 Protein of unknown function (DUF3053) LGL88_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LGL88_00130 PF02378 Phosphotransferase system, EIIC LGL88_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LGL88_00135 PF01232 Mannitol dehydrogenase Rossmann domain LGL88_00135 PF08125 Mannitol dehydrogenase C-terminal domain LGL88_00140 PF05068 Mannitol repressor LGL88_00145 PF10928 Protein of unknown function (DUF2810) LGL88_00150 PF03473 MOSC domain LGL88_00150 PF03475 3-alpha domain LGL88_00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LGL88_00155 PF02203 Tar ligand binding domain homologue LGL88_00155 PF00672 HAMP domain LGL88_00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LGL88_00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LGL88_00165 PF02634 FdhD/NarQ family LGL88_00175 PF09163 Formate dehydrogenase N, transmembrane LGL88_00175 PF13247 4Fe-4S dicluster domain LGL88_00180 PF01292 Prokaryotic cytochrome b561 LGL88_00185 PF04216 Protein involved in formate dehydrogenase formation LGL88_00190 PF03841 L-seryl-tRNA selenium transferase LGL88_00190 PF12390 Selenocysteine synthase N terminal LGL88_00195 PF09107 Elongation factor SelB, winged helix LGL88_00195 PF00009 Elongation factor Tu GTP binding domain LGL88_00195 PF09106 Elongation factor SelB, winged helix LGL88_00195 PF03144 Elongation factor Tu domain 2 LGL88_00200 PF01427 D-ala-D-ala dipeptidase LGL88_00205 PF07690 Major Facilitator Superfamily LGL88_00210 PF01757 Acyltransferase family LGL88_00220 PF13356 Arm DNA-binding domain LGL88_00220 PF14659 Phage integrase, N-terminal SAM-like domain LGL88_00220 PF00589 Phage integrase family LGL88_00230 PF04606 Ogr/Delta-like zinc finger LGL88_00260 PF17345 Family of unknown function (DUF5375) LGL88_00275 PF00912 Transglycosylase LGL88_00275 PF00905 Penicillin binding protein transpeptidase domain LGL88_00285 PF01175 Urocanase Rossmann-like domain LGL88_00285 PF17392 Urocanase C-terminal domain LGL88_00285 PF17391 Urocanase N-terminal domain LGL88_00290 PF00221 Aromatic amino acid lyase LGL88_00295 PF00324 Amino acid permease LGL88_00305 PF12146 Serine aminopeptidase, S33 LGL88_00310 PF00884 Sulfatase LGL88_00310 PF08019 Phosphoethanolamine transferase EptA/EptB LGL88_00315 PF00072 Response regulator receiver domain LGL88_00315 PF00196 Bacterial regulatory proteins, luxR family LGL88_00320 PF07730 Histidine kinase LGL88_00320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_00320 PF05231 MASE1 LGL88_00325 PF07690 Major Facilitator Superfamily LGL88_00335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LGL88_00340 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_00345 PF12911 N-terminal TM domain of oligopeptide transport permease C LGL88_00345 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_00350 PF00005 ABC transporter LGL88_00350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LGL88_00355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LGL88_00355 PF00005 ABC transporter LGL88_00360 PF11658 Cellulose biosynthesis protein BcsG LGL88_00365 PF11120 Cellulose biosynthesis protein BcsF LGL88_00370 PF10995 Cellulose biosynthesis GIL LGL88_00380 PF06564 Cellulose biosynthesis protein BcsQ LGL88_00385 PF07238 PilZ domain LGL88_00385 PF00535 Glycosyl transferase family 2 LGL88_00385 PF03552 Cellulose synthase LGL88_00390 PF03170 Bacterial cellulose synthase subunit LGL88_00395 PF01270 Glycosyl hydrolases family 8 LGL88_00400 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LGL88_00405 PF00563 EAL domain LGL88_00405 PF17154 Gammaproteobacterial periplasmic sensor domain LGL88_00405 PF00672 HAMP domain LGL88_00405 PF00990 Diguanylate cyclase, GGDEF domain LGL88_00410 PF00375 Sodium:dicarboxylate symporter family LGL88_00415 PF00675 Insulinase (Peptidase family M16) LGL88_00415 PF05193 Peptidase M16 inactive domain LGL88_00420 PF00294 pfkB family carbohydrate kinase LGL88_00425 PF01361 Tautomerase enzyme LGL88_00430 PF00563 EAL domain LGL88_00435 PF02611 CDP-diacylglycerol pyrophosphatase LGL88_00440 PF03631 Virulence factor BrkB LGL88_00445 PF03466 LysR substrate binding domain LGL88_00445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_00450 PF00375 Sodium:dicarboxylate symporter family LGL88_00455 PF01053 Cys/Met metabolism PLP-dependent enzyme LGL88_00470 PF02369 Bacterial Ig-like domain (group 1) LGL88_00470 PF11924 Inverse autotransporter, beta-domain LGL88_00470 PF09134 Invasin, domain 3 LGL88_00470 PF07979 Intimin C-type lectin domain LGL88_00475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LGL88_00475 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_00480 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LGL88_00485 PF01432 Peptidase family M3 LGL88_00490 PF04445 Putative SAM-dependent methyltransferase LGL88_00495 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LGL88_00495 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LGL88_00500 PF00582 Universal stress protein family LGL88_00505 PF10625 Universal stress protein B (UspB) LGL88_00510 PF01384 Phosphate transporter family LGL88_00520 PF01810 LysE type translocator LGL88_00525 PF00583 Acetyltransferase (GNAT) family LGL88_00530 PF02678 Pirin LGL88_00530 PF17954 Quercetinase C-terminal cupin domain LGL88_00535 PF00356 Bacterial regulatory proteins, lacI family LGL88_00535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LGL88_00540 PF02447 GntP family permease LGL88_00545 PF01202 Shikimate kinase LGL88_00550 PF01914 MarC family integral membrane protein LGL88_00555 PF01118 Semialdehyde dehydrogenase, NAD binding domain LGL88_00555 PF02774 Semialdehyde dehydrogenase, dimerisation domain LGL88_00560 PF07694 5TMR of 5TMR-LYT LGL88_00560 PF06580 Histidine kinase LGL88_00565 PF00128 Alpha amylase, catalytic domain LGL88_00565 PF02806 Alpha amylase, C-terminal all-beta domain LGL88_00565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LGL88_00570 PF00128 Alpha amylase, catalytic domain LGL88_00570 PF18390 Glycogen debranching enzyme C-terminal domain LGL88_00570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LGL88_00575 PF00483 Nucleotidyl transferase LGL88_00580 PF00534 Glycosyl transferases group 1 LGL88_00580 PF08323 Starch synthase catalytic domain LGL88_00585 PF00343 Carbohydrate phosphorylase LGL88_00590 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LGL88_00590 PF01266 FAD dependent oxidoreductase LGL88_00595 PF00455 DeoR C terminal sensor domain LGL88_00595 PF08220 DeoR-like helix-turn-helix domain LGL88_00600 PF01694 Rhomboid family LGL88_00600 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LGL88_00605 PF00581 Rhodanese-like domain LGL88_00610 PF00196 Bacterial regulatory proteins, luxR family LGL88_00610 PF17874 MalT-like TPR region LGL88_00615 PF00343 Carbohydrate phosphorylase LGL88_00620 PF02446 4-alpha-glucanotransferase LGL88_00625 PF01106 NifU-like domain LGL88_00625 PF01521 Iron-sulphur cluster biosynthesis LGL88_00630 PF00156 Phosphoribosyl transferase domain LGL88_00635 PF00561 alpha/beta hydrolase fold LGL88_00645 PF09012 FeoC like transcriptional regulator LGL88_00650 PF07664 Ferrous iron transport protein B C terminus LGL88_00650 PF07670 Nucleoside recognition LGL88_00650 PF17910 FeoB cytosolic helical domain LGL88_00650 PF02421 Ferrous iron transport protein B LGL88_00655 PF04023 FeoA domain LGL88_00660 PF00575 S1 RNA binding domain LGL88_00660 PF09371 Tex-like protein N-terminal domain LGL88_00660 PF16921 Tex protein YqgF-like domain LGL88_00660 PF17674 HHH domain LGL88_00685 PF01272 Transcription elongation factor, GreA/GreB, C-term LGL88_00685 PF03449 Transcription elongation factor, N-terminal LGL88_00690 PF00486 Transcriptional regulatory protein, C terminal LGL88_00690 PF00072 Response regulator receiver domain LGL88_00695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_00695 PF00512 His Kinase A (phospho-acceptor) domain LGL88_00695 PF00672 HAMP domain LGL88_00700 PF01293 Phosphoenolpyruvate carboxykinase LGL88_00705 PF01430 Hsp33 protein LGL88_00710 PF01479 S4 domain LGL88_00715 PF13419 Haloacid dehalogenase-like hydrolase LGL88_00720 PF07095 Intracellular growth attenuator protein IgaA LGL88_00725 PF00293 NUDIX domain LGL88_00730 PF00912 Transglycosylase LGL88_00730 PF17092 Penicillin-binding protein OB-like domain LGL88_00730 PF00905 Penicillin binding protein transpeptidase domain LGL88_00755 PF03958 Bacterial type II/III secretion system short domain LGL88_00755 PF00263 Bacterial type II and III secretion system protein LGL88_00760 PF01202 Shikimate kinase LGL88_00765 PF01761 3-dehydroquinate synthase LGL88_00770 PF05036 Sporulation related domain LGL88_00775 PF02086 D12 class N6 adenine-specific DNA methyltransferase LGL88_00780 PF00834 Ribulose-phosphate 3 epimerase family LGL88_00785 PF13419 Haloacid dehalogenase-like hydrolase LGL88_00790 PF00579 tRNA synthetases class I (W and Y) LGL88_00795 PF10414 Sirohaem synthase dimerisation region LGL88_00795 PF14824 Sirohaem biosynthesis protein central LGL88_00795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LGL88_00800 PF01226 Formate/nitrite transporter LGL88_00805 PF13806 Rieske-like [2Fe-2S] domain LGL88_00810 PF04324 BFD-like [2Fe-2S] binding domain LGL88_00810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LGL88_00810 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_00810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LGL88_00810 PF18267 Rubredoxin NAD+ reductase C-terminal domain LGL88_00815 PF07969 Amidohydrolase family LGL88_00820 PF07690 Major Facilitator Superfamily LGL88_00835 PF00356 Bacterial regulatory proteins, lacI family LGL88_00840 PF02056 Family 4 glycosyl hydrolase LGL88_00840 PF11975 Family 4 glycosyl hydrolase C-terminal domain LGL88_00845 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LGL88_00850 PF00117 Glutamine amidotransferase class-I LGL88_00855 PF00202 Aminotransferase class-III LGL88_00860 PF12805 FUSC-like inner membrane protein yccS LGL88_00865 PF13545 Crp-like helix-turn-helix domain LGL88_00865 PF00027 Cyclic nucleotide-binding domain LGL88_00870 PF02566 OsmC-like protein LGL88_00890 PF00156 Phosphoribosyl transferase domain LGL88_00895 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_00900 PF00485 Phosphoribulokinase / Uridine kinase family LGL88_00905 PF06794 Uncharacterised protein family (UPF0270) LGL88_00910 PF00561 alpha/beta hydrolase fold LGL88_00915 PF01810 LysE type translocator LGL88_00920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LGL88_00925 PF00535 Glycosyl transferase family 2 LGL88_00930 PF00005 ABC transporter LGL88_00930 PF12848 ABC transporter LGL88_00935 PF02525 Flavodoxin-like fold LGL88_00940 PF00999 Sodium/hydrogen exchanger family LGL88_00940 PF02254 TrkA-N domain LGL88_00945 PF09526 Probable metal-binding protein (DUF2387) LGL88_00950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LGL88_00955 PF04102 SlyX LGL88_00960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LGL88_00960 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LGL88_00965 PF13309 HTH domain LGL88_00965 PF08348 YheO-like PAS domain LGL88_00970 PF02635 DsrE/DsrF-like family LGL88_00975 PF02635 DsrE/DsrF-like family LGL88_00980 PF04077 DsrH like protein LGL88_00985 PF00164 Ribosomal protein S12/S23 LGL88_00990 PF00177 Ribosomal protein S7p/S5e LGL88_00995 PF00679 Elongation factor G C-terminus LGL88_00995 PF14492 Elongation Factor G, domain II LGL88_00995 PF03764 Elongation factor G, domain IV LGL88_00995 PF00009 Elongation factor Tu GTP binding domain LGL88_00995 PF03144 Elongation factor Tu domain 2 LGL88_01000 PF00009 Elongation factor Tu GTP binding domain LGL88_01000 PF03143 Elongation factor Tu C-terminal domain LGL88_01000 PF03144 Elongation factor Tu domain 2 LGL88_01005 PF04324 BFD-like [2Fe-2S] binding domain LGL88_01010 PF00210 Ferritin-like domain LGL88_01015 PF00338 Ribosomal protein S10p/S20e LGL88_01020 PF00297 Ribosomal protein L3 LGL88_01025 PF00573 Ribosomal protein L4/L1 family LGL88_01030 PF00276 Ribosomal protein L23 LGL88_01035 PF03947 Ribosomal Proteins L2, C-terminal domain LGL88_01035 PF00181 Ribosomal Proteins L2, RNA binding domain LGL88_01040 PF00203 Ribosomal protein S19 LGL88_01045 PF00237 Ribosomal protein L22p/L17e LGL88_01050 PF00189 Ribosomal protein S3, C-terminal domain LGL88_01050 PF07650 KH domain LGL88_01055 PF00252 Ribosomal protein L16p/L10e LGL88_01060 PF00831 Ribosomal L29 protein LGL88_01065 PF00366 Ribosomal protein S17 LGL88_01070 PF00238 Ribosomal protein L14p/L23e LGL88_01075 PF00467 KOW motif LGL88_01075 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LGL88_01080 PF00281 Ribosomal protein L5 LGL88_01080 PF00673 ribosomal L5P family C-terminus LGL88_01085 PF00253 Ribosomal protein S14p/S29e LGL88_01090 PF00410 Ribosomal protein S8 LGL88_01095 PF00347 Ribosomal protein L6 LGL88_01100 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LGL88_01105 PF00333 Ribosomal protein S5, N-terminal domain LGL88_01105 PF03719 Ribosomal protein S5, C-terminal domain LGL88_01110 PF00327 Ribosomal protein L30p/L7e LGL88_01115 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LGL88_01120 PF00344 SecY translocase LGL88_01125 PF00444 Ribosomal protein L36 LGL88_01130 PF00416 Ribosomal protein S13/S18 LGL88_01135 PF00411 Ribosomal protein S11 LGL88_01140 PF00163 Ribosomal protein S4/S9 N-terminal domain LGL88_01140 PF01479 S4 domain LGL88_01145 PF01000 RNA polymerase Rpb3/RpoA insert domain LGL88_01145 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LGL88_01145 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LGL88_01150 PF01196 Ribosomal protein L17 LGL88_01155 PF13411 MerR HTH family regulatory protein LGL88_01160 PF03889 Alternative ribosome-rescue factor A LGL88_01165 PF01741 Large-conductance mechanosensitive channel, MscL LGL88_01170 PF02254 TrkA-N domain LGL88_01170 PF02080 TrkA-C domain LGL88_01175 PF01189 16S rRNA methyltransferase RsmB/F LGL88_01175 PF01029 NusB family LGL88_01180 PF02911 Formyl transferase, C-terminal domain LGL88_01180 PF00551 Formyl transferase LGL88_01185 PF01327 Polypeptide deformylase LGL88_01190 PF02481 DNA recombination-mediator protein A LGL88_01190 PF17782 DprA winged helix domain LGL88_01195 PF04361 Protein of unknown function (DUF494) LGL88_01200 PF01396 Topoisomerase DNA binding C4 zinc finger LGL88_01205 PF01300 Telomere recombination LGL88_01210 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LGL88_01210 PF08501 Shikimate dehydrogenase substrate binding domain LGL88_01210 PF01488 Shikimate / quinate 5-dehydrogenase LGL88_01215 PF00132 Bacterial transferase hexapeptide (six repeats) LGL88_01240 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LGL88_01240 PF01565 FAD binding domain LGL88_01245 PF02237 Biotin protein ligase C terminal domain LGL88_01245 PF03099 Biotin/lipoate A/B protein ligase family LGL88_01245 PF08279 HTH domain LGL88_01250 PF00485 Phosphoribulokinase / Uridine kinase family LGL88_01275 PF00009 Elongation factor Tu GTP binding domain LGL88_01275 PF03144 Elongation factor Tu domain 2 LGL88_01275 PF03143 Elongation factor Tu C-terminal domain LGL88_01280 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LGL88_01285 PF00467 KOW motif LGL88_01285 PF02357 Transcription termination factor nusG LGL88_01290 PF00298 Ribosomal protein L11, RNA binding domain LGL88_01290 PF03946 Ribosomal protein L11, N-terminal domain LGL88_01295 PF00687 Ribosomal protein L1p/L10e family LGL88_01300 PF00466 Ribosomal protein L10 LGL88_01305 PF16320 Ribosomal protein L7/L12 dimerisation domain LGL88_01305 PF00542 Ribosomal protein L7/L12 C-terminal domain LGL88_01310 PF04563 RNA polymerase beta subunit LGL88_01310 PF10385 RNA polymerase beta subunit external 1 domain LGL88_01310 PF00562 RNA polymerase Rpb2, domain 6 LGL88_01310 PF04560 RNA polymerase Rpb2, domain 7 LGL88_01310 PF04561 RNA polymerase Rpb2, domain 2 LGL88_01310 PF04565 RNA polymerase Rpb2, domain 3 LGL88_01315 PF00623 RNA polymerase Rpb1, domain 2 LGL88_01315 PF04997 RNA polymerase Rpb1, domain 1 LGL88_01315 PF04983 RNA polymerase Rpb1, domain 3 LGL88_01315 PF05000 RNA polymerase Rpb1, domain 4 LGL88_01315 PF04998 RNA polymerase Rpb1, domain 5 LGL88_01320 PF06968 Biotin and Thiamin Synthesis associated domain LGL88_01320 PF04055 Radical SAM superfamily LGL88_01325 PF05690 Thiazole biosynthesis protein ThiG LGL88_01330 PF02597 ThiS family LGL88_01335 PF00899 ThiF family LGL88_01340 PF02581 Thiamine monophosphate synthase LGL88_01345 PF13667 ThiC-associated domain LGL88_01345 PF01964 Radical SAM ThiC family LGL88_01350 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LGL88_01355 PF00293 NUDIX domain LGL88_01355 PF09297 NADH pyrophosphatase zinc ribbon domain LGL88_01360 PF01208 Uroporphyrinogen decarboxylase (URO-D) LGL88_01365 PF04493 Endonuclease V LGL88_01370 PF04222 Protein of unknown function (DUF416) LGL88_01375 PF00216 Bacterial DNA-binding protein LGL88_01380 PF07356 Protein of unknown function (DUF1481) LGL88_01385 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LGL88_01385 PF02843 Phosphoribosylglycinamide synthetase, C domain LGL88_01385 PF02844 Phosphoribosylglycinamide synthetase, N domain LGL88_01390 PF02142 MGS-like domain LGL88_01390 PF01808 AICARFT/IMPCHase bienzyme LGL88_01430 PF04204 Homoserine O-succinyltransferase LGL88_01435 PF01274 Malate synthase LGL88_01440 PF00463 Isocitrate lyase family LGL88_01445 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LGL88_01450 PF09339 IclR helix-turn-helix domain LGL88_01450 PF01614 Bacterial transcriptional regulator LGL88_01455 PF02607 B12 binding domain LGL88_01455 PF02310 B12 binding domain LGL88_01455 PF00809 Pterin binding enzyme LGL88_01455 PF02574 Homocysteine S-methyltransferase LGL88_01455 PF02965 Vitamin B12 dependent methionine synthase, activation domain LGL88_01470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_01470 PF03466 LysR substrate binding domain LGL88_01475 PF03400 IS1 transposase LGL88_01550 PF17758 Proteasomal ATPase OB N-terminal domain LGL88_01550 PF00004 ATPase family associated with various cellular activities (AAA) LGL88_01550 PF16450 Proteasomal ATPase OB C-terminal domain LGL88_01560 PF04488 Glycosyltransferase sugar-binding region containing DXD motif LGL88_01570 PF05860 haemagglutination activity domain LGL88_01570 PF13332 Hemagglutinin repeat LGL88_01575 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LGL88_01575 PF17287 POTRA domain LGL88_01575 PF08479 POTRA domain, ShlB-type LGL88_01580 PF00696 Amino acid kinase family LGL88_01580 PF01842 ACT domain LGL88_01585 PF00342 Phosphoglucose isomerase LGL88_01590 PF06146 Phosphate-starvation-inducible E LGL88_01595 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_01600 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_01600 PF14785 Maltose transport system permease protein MalF P2 domain LGL88_01605 PF01547 Bacterial extracellular solute-binding protein LGL88_01615 PF00005 ABC transporter LGL88_01615 PF17912 MalK OB fold domain LGL88_01620 PF02264 LamB porin LGL88_01625 PF07148 Maltose operon periplasmic protein precursor (MalM) LGL88_01630 PF04345 Chorismate lyase LGL88_01635 PF01040 UbiA prenyltransferase family LGL88_01640 PF01553 Acyltransferase LGL88_01645 PF01219 Prokaryotic diacylglycerol kinase LGL88_01650 PF01726 LexA DNA binding domain LGL88_01650 PF00717 Peptidase S24-like LGL88_01655 PF01475 Ferric uptake regulator family LGL88_01660 PF01207 Dihydrouridine synthase (Dus) LGL88_01665 PF09583 Phage shock protein G (Phageshock_PspG) LGL88_01670 PF00107 Zinc-binding dehydrogenase LGL88_01670 PF08240 Alcohol dehydrogenase GroES-like domain LGL88_01675 PF03796 DnaB-like helicase C terminal domain LGL88_01675 PF00772 DnaB-like helicase N terminal domain LGL88_01680 PF01168 Alanine racemase, N-terminal domain LGL88_01680 PF00842 Alanine racemase, C-terminal domain LGL88_01685 PF00155 Aminotransferase class I and II LGL88_01690 PF04237 YjbR LGL88_01695 PF00005 ABC transporter LGL88_01695 PF17755 UvrA DNA-binding domain LGL88_01695 PF17760 UvrA interaction domain LGL88_01700 PF00436 Single-strand binding protein family LGL88_01710 PF00860 Permease family LGL88_01715 PF00999 Sodium/hydrogen exchanger family LGL88_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_01720 PF03466 LysR substrate binding domain LGL88_01725 PF03788 LrgA family LGL88_01730 PF04172 LrgB-like family LGL88_01735 PF00484 Carbonic anhydrase LGL88_01740 PF03279 Bacterial lipid A biosynthesis acyltransferase LGL88_01750 PF02954 Bacterial regulatory protein, Fis family LGL88_01755 PF01207 Dihydrouridine synthase (Dus) LGL88_01765 PF00474 Sodium:solute symporter family LGL88_01770 PF06196 Protein of unknown function (DUF997) LGL88_01775 PF02785 Biotin carboxylase C-terminal domain LGL88_01775 PF00289 Biotin carboxylase, N-terminal domain LGL88_01775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LGL88_01780 PF00364 Biotin-requiring enzyme LGL88_01785 PF01220 Dehydroquinase class II LGL88_01790 PF01794 Ferric reductase like transmembrane component LGL88_01795 PF00174 Oxidoreductase molybdopterin binding domain LGL88_01800 PF00107 Zinc-binding dehydrogenase LGL88_01800 PF08240 Alcohol dehydrogenase GroES-like domain LGL88_01805 PF00563 EAL domain LGL88_01805 PF17157 Gammaproteobacterial periplasmic sensor domain LGL88_01805 PF00990 Diguanylate cyclase, GGDEF domain LGL88_01815 PF04085 rod shape-determining protein MreC LGL88_01820 PF04093 rod shape-determining protein MreD LGL88_01825 PF02545 Maf-like protein LGL88_01830 PF10150 Ribonuclease E/G family LGL88_01830 PF00575 S1 RNA binding domain LGL88_01835 PF13502 AsmA-like C-terminal region LGL88_01835 PF13116 Protein of unknown function LGL88_01840 PF00795 Carbon-nitrogen hydrolase LGL88_01845 PF01523 Putative modulator of DNA gyrase LGL88_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_01850 PF03466 LysR substrate binding domain LGL88_01855 PF07869 Protein of unknown function (DUF1656) LGL88_01860 PF13533 Biotin-lipoyl like LGL88_01865 PF04632 Fusaric acid resistance protein family LGL88_01870 PF00171 Aldehyde dehydrogenase family LGL88_01875 PF00545 ribonuclease LGL88_01880 PF01337 Barstar (barnase inhibitor) LGL88_01885 PF04751 Protein of unknown function (DUF615) LGL88_01890 PF01523 Putative modulator of DNA gyrase LGL88_01895 PF07361 Cytochrome b562 LGL88_01900 PF14760 Rnk N-terminus LGL88_01900 PF01272 Transcription elongation factor, GreA/GreB, C-term LGL88_01910 PF00690 Cation transporter/ATPase, N-terminus LGL88_01910 PF00689 Cation transporting ATPase, C-terminus LGL88_01915 PF00356 Bacterial regulatory proteins, lacI family LGL88_01920 PF02378 Phosphotransferase system, EIIC LGL88_01920 PF00367 phosphotransferase system, EIIB LGL88_01925 PF00128 Alpha amylase, catalytic domain LGL88_01925 PF11941 Domain of unknown function (DUF3459) LGL88_01930 PF01042 Endoribonuclease L-PSP LGL88_01935 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LGL88_01935 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LGL88_01940 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LGL88_01940 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LGL88_01945 PF00381 PTS HPr component phosphorylation site LGL88_01950 PF03668 P-loop ATPase protein family LGL88_01955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LGL88_01960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LGL88_01965 PF00309 Sigma-54 factor, Activator interacting domain (AID) LGL88_01965 PF04963 Sigma-54 factor, core binding domain LGL88_01965 PF04552 Sigma-54, DNA binding domain LGL88_01970 PF00005 ABC transporter LGL88_01970 PF12399 Branched-chain amino acid ATP-binding cassette transporter LGL88_01975 PF03968 OstA-like protein LGL88_01980 PF06835 Lipopolysaccharide-assembly, LptC-related LGL88_01990 PF00571 CBS domain LGL88_01990 PF01380 SIS domain LGL88_01995 PF01699 Sodium/calcium exchanger protein LGL88_02000 PF00005 ABC transporter LGL88_02005 PF02405 Permease MlaE LGL88_02010 PF02470 MlaD protein LGL88_02015 PF05494 MlaC protein LGL88_02020 PF13466 STAS domain LGL88_02025 PF01722 BolA-like protein LGL88_02030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LGL88_02035 PF13180 PDZ domain LGL88_02040 PF00595 PDZ domain LGL88_02040 PF13180 PDZ domain LGL88_02045 PF06295 Protein of unknown function (DUF1043) LGL88_02050 PF03969 AFG1-like ATPase LGL88_02055 PF00572 Ribosomal protein L13 LGL88_02060 PF00380 Ribosomal protein S9/S16 LGL88_02065 PF00043 Glutathione S-transferase, C-terminal domain LGL88_02065 PF02798 Glutathione S-transferase, N-terminal domain LGL88_02070 PF04386 Stringent starvation protein B LGL88_02080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LGL88_02080 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_02085 PF04898 Glutamate synthase central domain LGL88_02085 PF01645 Conserved region in glutamate synthase LGL88_02085 PF00310 Glutamine amidotransferases class-II LGL88_02085 PF01493 GXGXG motif LGL88_02090 PF04055 Radical SAM superfamily LGL88_02090 PF16199 Radical_SAM C-terminal domain LGL88_02095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_02095 PF18415 Histidine kinase receptor ArcB trans-membrane domain LGL88_02095 PF01627 Hpt domain LGL88_02095 PF00989 PAS fold LGL88_02095 PF00072 Response regulator receiver domain LGL88_02095 PF00512 His Kinase A (phospho-acceptor) domain LGL88_02105 PF00912 Transglycosylase LGL88_02110 PF04972 BON domain LGL88_02115 PF13580 SIS domain LGL88_02120 PF02021 Uncharacterised protein family UPF0102 LGL88_02125 PF04348 LppC putative lipoprotein LGL88_02130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LGL88_02145 PF02678 Pirin LGL88_02145 PF17954 Quercetinase C-terminal cupin domain LGL88_02150 PF03466 LysR substrate binding domain LGL88_02150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_02155 PF07681 DoxX LGL88_02160 PF13997 YqjK-like protein LGL88_02165 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LGL88_02170 PF05957 Bacterial protein of unknown function (DUF883) LGL88_02180 PF13721 SecD export protein N-terminal TM region LGL88_02185 PF09335 SNARE associated Golgi protein LGL88_02195 PF00392 Bacterial regulatory proteins, gntR family LGL88_02195 PF07729 FCD domain LGL88_02200 PF07690 Major Facilitator Superfamily LGL88_02205 PF02614 Glucuronate isomerase LGL88_02210 PF01232 Mannitol dehydrogenase Rossmann domain LGL88_02210 PF08125 Mannitol dehydrogenase C-terminal domain LGL88_02215 PF08666 SAF domain LGL88_02215 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LGL88_02220 PF10688 Bacterial inner membrane protein LGL88_02225 PF00375 Sodium:dicarboxylate symporter family LGL88_02230 PF03741 Integral membrane protein TerC family LGL88_02235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LGL88_02240 PF01863 Protein of unknown function DUF45 LGL88_02250 PF05175 Methyltransferase small domain LGL88_02255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LGL88_02255 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_02260 PF08479 POTRA domain, ShlB-type LGL88_02260 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LGL88_02260 PF17287 POTRA domain LGL88_02265 PF13018 Extended Signal Peptide of Type V secretion system LGL88_02265 PF13332 Hemagglutinin repeat LGL88_02265 PF05860 haemagglutination activity domain LGL88_02265 PF04829 Pre-toxin domain with VENN motif LGL88_02270 PF07262 CDI immunity protein LGL88_02290 PF13332 Hemagglutinin repeat LGL88_02290 PF04829 Pre-toxin domain with VENN motif LGL88_02320 PF00106 short chain dehydrogenase LGL88_02345 PF07804 HipA-like C-terminal domain LGL88_02370 PF04546 Sigma-70, non-essential region LGL88_02370 PF04545 Sigma-70, region 4 LGL88_02370 PF04539 Sigma-70 region 3 LGL88_02370 PF04542 Sigma-70 region 2 LGL88_02370 PF00140 Sigma-70 factor, region 1.2 LGL88_02370 PF03979 Sigma-70 factor, region 1.1 LGL88_02375 PF08275 DNA primase catalytic core, N-terminal domain LGL88_02375 PF10410 DnaB-helicase binding domain of primase LGL88_02375 PF08278 DNA primase DnaG DnaB-binding LGL88_02375 PF01807 CHC2 zinc finger LGL88_02380 PF01165 Ribosomal protein S21 LGL88_02385 PF00814 Glycoprotease family LGL88_02390 PF02660 Glycerol-3-phosphate acyltransferase LGL88_02395 PF02152 Dihydroneopterin aldolase LGL88_02400 PF02673 Bacitracin resistance protein BacA LGL88_02405 PF01743 Poly A polymerase head domain LGL88_02405 PF12627 Probable RNA and SrmB- binding site of polymerase A LGL88_02405 PF01966 HD domain LGL88_02410 PF08239 Bacterial SH3 domain LGL88_02415 PF01928 CYTH domain LGL88_02420 PF03710 Glutamate-ammonia ligase adenylyltransferase LGL88_02420 PF08335 GlnD PII-uridylyltransferase LGL88_02425 PF01467 Cytidylyltransferase-like LGL88_02425 PF00294 pfkB family carbohydrate kinase LGL88_02435 PF04380 Membrane fusogenic activity LGL88_02440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LGL88_02445 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LGL88_02450 PF03738 Glutathionylspermidine synthase preATP-grasp LGL88_02455 PF06693 Protein of unknown function (DUF1190) LGL88_02460 PF02321 Outer membrane efflux protein LGL88_02465 PF00293 NUDIX domain LGL88_02470 PF06853 Protein of unknown function (DUF1249) LGL88_02475 PF00149 Calcineurin-like phosphoesterase LGL88_02480 PF05728 Uncharacterised protein family (UPF0227) LGL88_02485 PF00204 DNA gyrase B LGL88_02485 PF00986 DNA gyrase B subunit, carboxyl terminus LGL88_02485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_02485 PF01751 Toprim domain LGL88_02490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_02490 PF03466 LysR substrate binding domain LGL88_02495 PF02525 Flavodoxin-like fold LGL88_02500 PF03989 DNA gyrase C-terminal domain, beta-propeller LGL88_02500 PF00521 DNA gyrase/topoisomerase IV, subunit A LGL88_02505 PF01553 Acyltransferase LGL88_02510 PF07731 Multicopper oxidase LGL88_02510 PF07732 Multicopper oxidase LGL88_02515 PF04055 Radical SAM superfamily LGL88_02515 PF08497 Radical SAM N-terminal LGL88_02515 PF11842 Domain of unknown function (DUF3362) LGL88_02520 PF00248 Aldo/keto reductase family LGL88_02525 PF00465 Iron-containing alcohol dehydrogenase LGL88_02530 PF06719 AraC-type transcriptional regulator N-terminus LGL88_02530 PF12833 Helix-turn-helix domain LGL88_02535 PF09335 SNARE associated Golgi protein LGL88_02540 PF01053 Cys/Met metabolism PLP-dependent enzyme LGL88_02545 PF01618 MotA/TolQ/ExbB proton channel family LGL88_02550 PF02472 Biopolymer transport protein ExbD/TolR LGL88_02585 PF00437 Type II/IV secretion system protein LGL88_02605 PF04972 BON domain LGL88_02605 PF13629 Pilus formation protein N terminal region LGL88_02605 PF00263 Bacterial type II and III secretion system protein LGL88_02630 PF08501 Shikimate dehydrogenase substrate binding domain LGL88_02635 PF07715 TonB-dependent Receptor Plug Domain LGL88_02635 PF00593 TonB dependent receptor LGL88_02640 PF11806 Domain of unknown function (DUF3327) LGL88_02640 PF00756 Putative esterase LGL88_02645 PF03621 MbtH-like protein LGL88_02650 PF00501 AMP-binding enzyme LGL88_02650 PF13193 AMP-binding enzyme C-terminal domain LGL88_02650 PF00668 Condensation domain LGL88_02650 PF00550 Phosphopantetheine attachment site LGL88_02650 PF00975 Thioesterase domain LGL88_02660 PF00005 ABC transporter LGL88_02665 PF01032 FecCD transport family LGL88_02670 PF01032 FecCD transport family LGL88_02675 PF05977 Transmembrane secretion effector LGL88_02680 PF01497 Periplasmic binding protein LGL88_02685 PF00425 chorismate binding enzyme LGL88_02690 PF00501 AMP-binding enzyme LGL88_02690 PF13193 AMP-binding enzyme C-terminal domain LGL88_02695 PF00857 Isochorismatase family LGL88_02695 PF00550 Phosphopantetheine attachment site LGL88_02705 PF00501 AMP-binding enzyme LGL88_02705 PF13193 AMP-binding enzyme C-terminal domain LGL88_02705 PF00668 Condensation domain LGL88_02705 PF00550 Phosphopantetheine attachment site LGL88_02705 PF00975 Thioesterase domain LGL88_02710 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_02715 PF01490 Transmembrane amino acid transporter protein LGL88_02720 PF00871 Acetokinase family LGL88_02725 PF01228 Glycine radical LGL88_02725 PF02901 Pyruvate formate lyase-like LGL88_02730 PF00294 pfkB family carbohydrate kinase LGL88_02735 PF01380 SIS domain LGL88_02735 PF00571 CBS domain LGL88_02740 PF08220 DeoR-like helix-turn-helix domain LGL88_02740 PF00455 DeoR C terminal sensor domain LGL88_02745 PF06923 Glucitol operon activator protein (GutM) LGL88_02750 PF00106 short chain dehydrogenase LGL88_02755 PF03829 PTS system glucitol/sorbitol-specific IIA component LGL88_02760 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LGL88_02760 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LGL88_02765 PF03608 PTS system enzyme II sorbitol-specific factor LGL88_02775 PF16456 YmgD protein LGL88_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_02780 PF03466 LysR substrate binding domain LGL88_02855 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LGL88_02855 PF01464 Transglycosylase SLT domain LGL88_02860 PF04362 Bacterial Fe(2+) trafficking LGL88_02865 PF00633 Helix-hairpin-helix motif LGL88_02865 PF00730 HhH-GPD superfamily base excision DNA repair protein LGL88_02865 PF14815 NUDIX domain LGL88_02865 PF10576 Iron-sulfur binding domain of endonuclease III LGL88_02870 PF02390 Putative methyltransferase LGL88_02875 PF04320 Protein with unknown function (DUF469) LGL88_02880 PF04960 Glutaminase LGL88_02885 PF11101 Protein of unknown function (DUF2884) LGL88_02890 PF06969 HemN C-terminal domain LGL88_02890 PF04055 Radical SAM superfamily LGL88_02895 PF01725 Ham1 family LGL88_02900 PF02594 Uncharacterised ACR, YggU family COG1872 LGL88_02905 PF02325 YGGT family LGL88_02910 PF14748 Pyrroline-5-carboxylate reductase dimerisation LGL88_02910 PF03807 NADP oxidoreductase coenzyme F420-dependent LGL88_02915 PF01168 Alanine racemase, N-terminal domain LGL88_02920 PF00437 Type II/IV secretion system protein LGL88_02925 PF04371 Porphyromonas-type peptidyl-arginine deiminase LGL88_02930 PF00795 Carbon-nitrogen hydrolase LGL88_02935 PF03652 Holliday junction resolvase LGL88_02940 PF02622 Uncharacterized ACR, COG1678 LGL88_02945 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LGL88_02945 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LGL88_02950 PF04452 RNA methyltransferase LGL88_02955 PF04231 Endonuclease I LGL88_02960 PF10263 SprT-like family LGL88_02960 PF17283 SprT-like zinc ribbon domain LGL88_02970 PF04143 Sulphur transport LGL88_02980 PF02773 S-adenosylmethionine synthetase, C-terminal domain LGL88_02980 PF02772 S-adenosylmethionine synthetase, central domain LGL88_02980 PF00438 S-adenosylmethionine synthetase, N-terminal domain LGL88_02985 PF17810 Arginine decarboxylase helical bundle domain LGL88_02985 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LGL88_02985 PF17944 Arginine decarboxylase C-terminal helical extension LGL88_02995 PF02779 Transketolase, pyrimidine binding domain LGL88_02995 PF00456 Transketolase, thiamine diphosphate binding domain LGL88_02995 PF02780 Transketolase, C-terminal domain LGL88_03000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LGL88_03000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LGL88_03005 PF00162 Phosphoglycerate kinase LGL88_03010 PF01116 Fructose-bisphosphate aldolase class-II LGL88_03015 PF00924 Mechanosensitive ion channel LGL88_03015 PF05552 Conserved TM helix LGL88_03020 PF01810 LysE type translocator LGL88_03025 PF04402 Protein of unknown function (DUF541) LGL88_03030 PF03466 LysR substrate binding domain LGL88_03030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_03035 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LGL88_03040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LGL88_03040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LGL88_03040 PF01842 ACT domain LGL88_03045 PF01812 5-formyltetrahydrofolate cyclo-ligase family LGL88_03055 PF05164 Cell division protein ZapA LGL88_03060 PF03695 Uncharacterised protein family (UPF0149) LGL88_03065 PF05195 Aminopeptidase P, N-terminal domain LGL88_03065 PF00557 Metallopeptidase family M24 LGL88_03070 PF01494 FAD binding domain LGL88_03075 PF01494 FAD binding domain LGL88_03080 PF01571 Aminomethyltransferase folate-binding domain LGL88_03080 PF08669 Glycine cleavage T-protein C-terminal barrel domain LGL88_03085 PF01597 Glycine cleavage H-protein LGL88_03090 PF02347 Glycine cleavage system P-protein LGL88_03100 PF03006 Haemolysin-III related LGL88_03105 PF01571 Aminomethyltransferase folate-binding domain LGL88_03110 PF03937 Flavinator of succinate dehydrogenase LGL88_03115 PF07254 Membrane-bound toxin component of toxin-antitoxin system LGL88_03120 PF00258 Flavodoxin LGL88_03125 PF02899 Phage integrase, N-terminal SAM-like domain LGL88_03125 PF00589 Phage integrase family LGL88_03130 PF10411 Disulfide bond isomerase protein N-terminus LGL88_03130 PF13098 Thioredoxin-like domain LGL88_03135 PF01368 DHH family LGL88_03135 PF02272 DHHA1 domain LGL88_03135 PF17768 RecJ OB domain LGL88_03145 PF00152 tRNA synthetases class II (D, K and N) LGL88_03145 PF01336 OB-fold nucleic acid binding domain LGL88_03155 PF02405 Permease MlaE LGL88_03160 PF00005 ABC transporter LGL88_03185 PF00263 Bacterial type II and III secretion system protein LGL88_03185 PF03958 Bacterial type II/III secretion system short domain LGL88_03190 PF00437 Type II/IV secretion system protein LGL88_03195 PF00482 Type II secretion system (T2SS), protein F LGL88_03200 PF07963 Prokaryotic N-terminal methylation motif LGL88_03200 PF08334 Type II secretion system (T2SS), protein G LGL88_03210 PF02501 Type II secretion system (T2SS), protein I LGL88_03210 PF07963 Prokaryotic N-terminal methylation motif LGL88_03215 PF11612 Type II secretion system (T2SS), protein J LGL88_03215 PF07963 Prokaryotic N-terminal methylation motif LGL88_03255 PF03466 LysR substrate binding domain LGL88_03255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_03260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_03260 PF03466 LysR substrate binding domain LGL88_03265 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LGL88_03265 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LGL88_03270 PF00356 Bacterial regulatory proteins, lacI family LGL88_03275 PF01553 Acyltransferase LGL88_03275 PF00501 AMP-binding enzyme LGL88_03275 PF13193 AMP-binding enzyme C-terminal domain LGL88_03280 PF07690 Major Facilitator Superfamily LGL88_03285 PF00248 Aldo/keto reductase family LGL88_03290 PF03741 Integral membrane protein TerC family LGL88_03295 PF02976 DNA mismatch repair enzyme MutH LGL88_03300 PF00293 NUDIX domain LGL88_03305 PF00391 PEP-utilising enzyme, mobile domain LGL88_03305 PF01590 GAF domain LGL88_03305 PF05524 PEP-utilising enzyme, N-terminal LGL88_03305 PF02896 PEP-utilising enzyme, TIM barrel domain LGL88_03310 PF01790 Prolipoprotein diacylglyceryl transferase LGL88_03315 PF00303 Thymidylate synthase LGL88_03320 PF07963 Prokaryotic N-terminal methylation motif LGL88_03320 PF00114 Pilin (bacterial filament) LGL88_03335 PF07963 Prokaryotic N-terminal methylation motif LGL88_03335 PF12528 Type II secretion prepilin peptidase dependent protein C LGL88_03340 PF17946 RecC C-terminal domain LGL88_03345 PF00675 Insulinase (Peptidase family M16) LGL88_03345 PF16187 Middle or third domain of peptidase_M16 LGL88_03345 PF05193 Peptidase M16 inactive domain LGL88_03350 PF12705 PD-(D/E)XK nuclease superfamily LGL88_03350 PF00580 UvrD/REP helicase N-terminal domain LGL88_03350 PF13361 UvrD-like helicase C-terminal domain LGL88_03355 PF13538 UvrD-like helicase C-terminal domain LGL88_03360 PF00696 Amino acid kinase family LGL88_03360 PF00583 Acetyltransferase (GNAT) family LGL88_03365 PF01520 N-acetylmuramoyl-L-alanine amidase LGL88_03365 PF11741 AMIN domain LGL88_03385 PF03562 MltA specific insert domain LGL88_03385 PF06725 3D domain LGL88_03390 PF00899 ThiF family LGL88_03395 PF02657 Fe-S metabolism associated domain LGL88_03400 PF00266 Aminotransferase class-V LGL88_03405 PF06004 Bacterial protein of unknown function (DUF903) LGL88_03410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_03410 PF03466 LysR substrate binding domain LGL88_03415 PF04241 Protein of unknown function (DUF423) LGL88_03420 PF01728 FtsJ-like methyltransferase LGL88_03420 PF18125 RlmM ferredoxin-like domain LGL88_03425 PF01367 5'-3' exonuclease, C-terminal SAM fold LGL88_03425 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LGL88_03430 PF11892 Domain of unknown function (DUF3412) LGL88_03430 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LGL88_03430 PF03641 Possible lysine decarboxylase LGL88_03435 PF14489 QueF-like protein LGL88_03435 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LGL88_03440 PF07348 Syd protein (SUKH-2) LGL88_03445 PF04287 tRNA pseudouridine synthase C LGL88_03450 PF00849 RNA pseudouridylate synthase LGL88_03455 PF00258 Flavodoxin LGL88_03460 PF11944 Protein of unknown function (DUF3461) LGL88_03465 PF00132 Bacterial transferase hexapeptide (six repeats) LGL88_03465 PF14602 Hexapeptide repeat of succinyl-transferase LGL88_03465 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LGL88_03470 PF01842 ACT domain LGL88_03470 PF08335 GlnD PII-uridylyltransferase LGL88_03470 PF01966 HD domain LGL88_03470 PF01909 Nucleotidyltransferase domain LGL88_03475 PF00557 Metallopeptidase family M24 LGL88_03480 PF00318 Ribosomal protein S2 LGL88_03485 PF00889 Elongation factor TS LGL88_03490 PF00696 Amino acid kinase family LGL88_03495 PF01765 Ribosome recycling factor LGL88_03500 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LGL88_03500 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LGL88_03500 PF13288 DXP reductoisomerase C-terminal domain LGL88_03505 PF01255 Putative undecaprenyl diphosphate synthase LGL88_03515 PF02163 Peptidase family M50 LGL88_03515 PF17820 PDZ domain LGL88_03520 PF01103 Surface antigen LGL88_03520 PF07244 Surface antigen variable number repeat LGL88_03525 PF03938 Outer membrane protein (OmpH-like) LGL88_03530 PF00132 Bacterial transferase hexapeptide (six repeats) LGL88_03530 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LGL88_03535 PF07977 FabA-like domain LGL88_03540 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LGL88_03540 PF00132 Bacterial transferase hexapeptide (six repeats) LGL88_03545 PF02684 Lipid-A-disaccharide synthetase LGL88_03550 PF01351 Ribonuclease HII LGL88_03555 PF14579 Helix-hairpin-helix motif LGL88_03555 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LGL88_03555 PF02811 PHP domain LGL88_03555 PF01336 OB-fold nucleic acid binding domain LGL88_03555 PF07733 Bacterial DNA polymerase III alpha NTPase domain LGL88_03560 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LGL88_03575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LGL88_03580 PF01171 PP-loop family LGL88_03580 PF09179 TilS substrate binding domain LGL88_03580 PF11734 TilS substrate C-terminal domain LGL88_03585 PF00034 Cytochrome c LGL88_03590 PF07073 Modulator of Rho-dependent transcription termination (ROF) LGL88_03595 PF06786 Uncharacterised protein family (UPF0253) LGL88_03600 PF07152 YaeQ protein LGL88_03605 PF00472 RF-1 domain LGL88_03610 PF17185 NlpE C-terminal OB domain LGL88_03610 PF04170 NlpE N-terminal domain LGL88_03615 PF03129 Anticodon binding domain LGL88_03615 PF04073 Aminoacyl-tRNA editing domain LGL88_03615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LGL88_03620 PF18389 TrmO C-terminal domain LGL88_03620 PF01980 tRNA-methyltransferase O LGL88_03625 PF16358 RcsF lipoprotein LGL88_03630 PF03180 NLPA lipoprotein LGL88_03635 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_03640 PF00005 ABC transporter LGL88_03640 PF09383 NIL domain LGL88_03670 PF10043 Predicted periplasmic lipoprotein (DUF2279) LGL88_03675 PF13091 PLD-like domain LGL88_03680 PF13607 Succinyl-CoA ligase like flavodoxin domain LGL88_03680 PF00583 Acetyltransferase (GNAT) family LGL88_03680 PF13380 CoA binding domain LGL88_03685 PF03942 DTW domain LGL88_03690 PF00085 Thioredoxin LGL88_03695 PF00588 SpoU rRNA Methylase family LGL88_03695 PF08032 RNA 2'-O ribose methyltransferase substrate binding LGL88_03700 PF07690 Major Facilitator Superfamily LGL88_03705 PF00529 HlyD membrane-fusion protein of T1SS LGL88_03705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LGL88_03715 PF01047 MarR family LGL88_03720 PF07690 Major Facilitator Superfamily LGL88_03730 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LGL88_03735 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_03740 PF00571 CBS domain LGL88_03740 PF00005 ABC transporter LGL88_03745 PF00268 Ribonucleotide reductase, small chain LGL88_03750 PF00317 Ribonucleotide reductase, all-alpha domain LGL88_03750 PF02867 Ribonucleotide reductase, barrel domain LGL88_03750 PF08343 Ribonucleotide reductase N-terminal LGL88_03755 PF07972 NrdI Flavodoxin like LGL88_03770 PF09400 Protein of unknown function (DUF2002) LGL88_03775 PF06711 Protein of unknown function (DUF1198) LGL88_03785 PF00313 'Cold-shock' DNA-binding domain LGL88_03790 PF06039 Malate:quinone oxidoreductase (Mqo) LGL88_03795 PF01070 FMN-dependent dehydrogenase LGL88_03800 PF02652 L-lactate permease LGL88_03805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_03805 PF03466 LysR substrate binding domain LGL88_03815 PF00561 alpha/beta hydrolase fold LGL88_03825 PF00005 ABC transporter LGL88_03830 PF02653 Branched-chain amino acid transport system / permease component LGL88_03840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LGL88_03840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LGL88_03845 PF01380 SIS domain LGL88_03845 PF00571 CBS domain LGL88_03905 PF01443 Viral (Superfamily 1) RNA helicase LGL88_03905 PF17841 BID domain of Bartonella effector protein (Bep) LGL88_03905 PF03389 MobA/MobL family LGL88_03920 PF04917 Bacterial shufflon protein, N-terminal constant region LGL88_03925 PF00145 C-5 cytosine-specific DNA methylase LGL88_03940 PF13356 Arm DNA-binding domain LGL88_03940 PF00589 Phage integrase family LGL88_03950 PF01668 SmpB protein LGL88_03955 PF03364 Polyketide cyclase / dehydrase and lipid transport LGL88_03960 PF03658 RnfH family Ubiquitin LGL88_03965 PF04355 SmpA / OmlA family LGL88_03970 PF02463 RecF/RecN/SMC N terminal domain LGL88_03975 PF01513 ATP-NAD kinase LGL88_03980 PF01025 GrpE LGL88_03985 PF03167 Uracil DNA glycosylase superfamily LGL88_03990 PF01228 Glycine radical LGL88_04000 PF12796 Ankyrin repeats (3 copies) LGL88_04005 PF00271 Helicase conserved C-terminal domain LGL88_04005 PF00270 DEAD/DEAH box helicase LGL88_04010 PF05175 Methyltransferase small domain LGL88_04015 PF00890 FAD binding domain LGL88_04015 PF02910 Fumarate reductase flavoprotein C-term LGL88_04020 PF08281 Sigma-70, region 4 LGL88_04020 PF04542 Sigma-70 region 2 LGL88_04025 PF03872 Anti sigma-E protein RseA, N-terminal domain LGL88_04025 PF03873 Anti sigma-E protein RseA, C-terminal domain LGL88_04030 PF17188 MucB/RseB C-terminal domain LGL88_04030 PF03888 MucB/RseB N-terminal domain LGL88_04040 PF00679 Elongation factor G C-terminus LGL88_04040 PF00009 Elongation factor Tu GTP binding domain LGL88_04040 PF03144 Elongation factor Tu domain 2 LGL88_04040 PF06421 GTP-binding protein LepA C-terminus LGL88_04045 PF10502 Signal peptidase, peptidase S26 LGL88_04050 PF00035 Double-stranded RNA binding motif LGL88_04050 PF14622 Ribonuclease-III-like LGL88_04055 PF01926 50S ribosome-binding GTPase LGL88_04055 PF07650 KH domain LGL88_04060 PF02565 Recombination protein O C terminal LGL88_04060 PF11967 Recombination protein O N terminal LGL88_04065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LGL88_04070 PF01648 4'-phosphopantetheinyl transferase superfamily LGL88_04075 PF12838 4Fe-4S dicluster domain LGL88_04080 PF01418 Helix-turn-helix domain, rpiR family LGL88_04080 PF01380 SIS domain LGL88_04085 PF01380 SIS domain LGL88_04090 PF00367 phosphotransferase system, EIIB LGL88_04090 PF02378 Phosphotransferase system, EIIC LGL88_04100 PF14437 MafB19-like deaminase LGL88_04105 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_04105 PF01464 Transglycosylase SLT domain LGL88_04110 PF02769 AIR synthase related protein, C-terminal domain LGL88_04110 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LGL88_04110 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LGL88_04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_04120 PF00512 His Kinase A (phospho-acceptor) domain LGL88_04125 PF13942 YfhG lipoprotein LGL88_04130 PF00072 Response regulator receiver domain LGL88_04130 PF00158 Sigma-54 interaction domain LGL88_04135 PF02540 NAD synthase LGL88_04135 PF00795 Carbon-nitrogen hydrolase LGL88_04140 PF00543 Nitrogen regulatory protein P-II LGL88_04145 PF10797 Protein of unknown function LGL88_04150 PF10941 Protein of unknown function DUF2620 LGL88_04155 PF02126 Phosphotriesterase family LGL88_04160 PF01168 Alanine racemase, N-terminal domain LGL88_04170 PF14502 Helix-turn-helix domain LGL88_04170 PF14503 YhfZ C-terminal domain LGL88_04175 PF00970 Oxidoreductase FAD-binding domain LGL88_04175 PF00042 Globin LGL88_04175 PF00175 Oxidoreductase NAD-binding domain LGL88_04180 PF00464 Serine hydroxymethyltransferase LGL88_04185 PF12832 MFS_1 like family LGL88_04190 PF00874 PRD domain LGL88_04195 PF06226 Protein of unknown function (DUF1007) LGL88_04200 PF03824 High-affinity nickel-transport protein LGL88_04205 PF00459 Inositol monophosphatase family LGL88_04210 PF00588 SpoU rRNA Methylase family LGL88_04215 PF02082 Transcriptional regulator LGL88_04220 PF00266 Aminotransferase class-V LGL88_04225 PF01592 NifU-like N terminal domain LGL88_04230 PF01521 Iron-sulphur cluster biosynthesis LGL88_04235 PF07743 HSCB C-terminal oligomerisation domain LGL88_04235 PF00226 DnaJ domain LGL88_04240 PF00012 Hsp70 protein LGL88_04245 PF00111 2Fe-2S iron-sulfur cluster binding domain LGL88_04250 PF04384 Iron-sulphur cluster assembly LGL88_04255 PF12404 Peptidase LGL88_04255 PF00883 Cytosol aminopeptidase family, catalytic domain LGL88_04260 PF07179 SseB protein N-terminal domain LGL88_04260 PF14581 SseB protein C-terminal domain LGL88_04265 PF07703 Alpha-2-macroglobulin bait region domain LGL88_04265 PF00207 Alpha-2-macroglobulin family LGL88_04265 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LGL88_04265 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LGL88_04265 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LGL88_04265 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LGL88_04265 PF17962 Bacterial macroglobulin domain 6 LGL88_04265 PF07678 A-macroglobulin TED domain LGL88_04265 PF01835 MG2 domain LGL88_04270 PF06832 Penicillin-Binding Protein C-terminus Family LGL88_04270 PF00912 Transglycosylase LGL88_04270 PF00905 Penicillin binding protein transpeptidase domain LGL88_04280 PF00334 Nucleoside diphosphate kinase LGL88_04285 PF04055 Radical SAM superfamily LGL88_04295 PF13464 Domain of unknown function (DUF4115) LGL88_04300 PF04551 GcpE protein LGL88_04305 PF13393 Histidyl-tRNA synthetase LGL88_04305 PF03129 Anticodon binding domain LGL88_04310 PF09976 Tetratricopeptide repeat-like domain LGL88_04315 PF13360 PQQ-like domain LGL88_04320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LGL88_04320 PF01926 50S ribosome-binding GTPase LGL88_04325 PF07191 zinc-ribbons LGL88_04330 PF02601 Exonuclease VII, large subunit LGL88_04330 PF13742 OB-fold nucleic acid binding domain LGL88_04335 PF00571 CBS domain LGL88_04335 PF00478 IMP dehydrogenase / GMP reductase domain LGL88_04340 PF00117 Glutamine amidotransferase class-I LGL88_04340 PF00958 GMP synthase C terminal domain LGL88_04340 PF02540 NAD synthase LGL88_04350 PF08543 Phosphomethylpyrimidine kinase LGL88_04365 PF00781 Diacylglycerol kinase catalytic domain LGL88_04370 PF16325 Peptidase family U32 C-terminal domain LGL88_04370 PF01136 Peptidase family U32 LGL88_04375 PF07411 Domain of unknown function (DUF1508) LGL88_04380 PF00072 Response regulator receiver domain LGL88_04380 PF00486 Transcriptional regulatory protein, C terminal LGL88_04385 PF00672 HAMP domain LGL88_04385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_04385 PF00512 His Kinase A (phospho-acceptor) domain LGL88_04390 PF07690 Major Facilitator Superfamily LGL88_04395 PF00873 AcrB/AcrD/AcrF family LGL88_04400 PF00873 AcrB/AcrD/AcrF family LGL88_04405 PF13533 Biotin-lipoyl like LGL88_04420 PF13953 PapC C-terminal domain LGL88_04420 PF13954 PapC N-terminal domain LGL88_04420 PF00577 Outer membrane usher protein LGL88_04425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LGL88_04425 PF02753 Pili assembly chaperone PapD, C-terminal domain LGL88_04435 PF00012 Hsp70 protein LGL88_04440 PF01769 Divalent cation transporter LGL88_04440 PF03448 MgtE intracellular N domain LGL88_04440 PF00571 CBS domain LGL88_04450 PF02541 Ppx/GppA phosphatase family LGL88_04455 PF02503 Polyphosphate kinase middle domain LGL88_04455 PF13090 Polyphosphate kinase C-terminal domain 2 LGL88_04455 PF17941 Polyphosphate kinase C-terminal domain 1 LGL88_04455 PF13089 Polyphosphate kinase N-terminal domain LGL88_04460 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_04465 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_04470 PF00005 ABC transporter LGL88_04475 PF13302 Acetyltransferase (GNAT) domain LGL88_04480 PF00551 Formyl transferase LGL88_04485 PF00586 AIR synthase related protein, N-terminal domain LGL88_04485 PF02769 AIR synthase related protein, C-terminal domain LGL88_04495 PF00860 Permease family LGL88_04500 PF00308 Bacterial dnaA protein LGL88_04505 PF03960 ArsC family LGL88_04510 PF07720 Tetratricopeptide repeat LGL88_04510 PF01435 Peptidase family M48 LGL88_04515 PF01594 AI-2E family transporter LGL88_04520 PF00578 AhpC/TSA family LGL88_04525 PF01842 ACT domain LGL88_04530 PF00701 Dihydrodipicolinate synthetase family LGL88_04535 PF06804 NlpB/DapX lipoprotein LGL88_04540 PF01259 SAICAR synthetase LGL88_04545 PF04284 Protein of unknown function (DUF441) LGL88_04550 PF17176 tRNA-binding domain LGL88_04550 PF05127 Helicase LGL88_04550 PF13718 GNAT acetyltransferase 2 LGL88_04550 PF08351 Domain of unknown function (DUF1726) LGL88_04555 PF02230 Phospholipase/Carboxylesterase LGL88_04560 PF13980 Uncharacterised protein family (UPF0370) LGL88_04565 PF02557 D-alanyl-D-alanine carboxypeptidase LGL88_04570 PF01546 Peptidase family M20/M25/M40 LGL88_04570 PF07687 Peptidase dimerisation domain LGL88_04575 PF03960 ArsC family LGL88_04580 PF01817 Chorismate mutase type II LGL88_04590 PF00873 AcrB/AcrD/AcrF family LGL88_04600 PF00196 Bacterial regulatory proteins, luxR family LGL88_04600 PF00072 Response regulator receiver domain LGL88_04605 PF13187 4Fe-4S dicluster domain LGL88_04605 PF12800 4Fe-4S binding domain LGL88_04605 PF00037 4Fe-4S binding domain LGL88_04610 PF03927 NapD protein LGL88_04615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LGL88_04615 PF00384 Molybdopterin oxidoreductase LGL88_04615 PF10518 TAT (twin-arginine translocation) pathway signal sequence LGL88_04615 PF01568 Molydopterin dinucleotide binding domain LGL88_04620 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LGL88_04625 PF03264 NapC/NirT cytochrome c family, N-terminal region LGL88_04630 PF00293 NUDIX domain LGL88_04635 PF03949 Malic enzyme, NAD binding domain LGL88_04635 PF01515 Phosphate acetyl/butaryl transferase LGL88_04635 PF00390 Malic enzyme, N-terminal domain LGL88_04640 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LGL88_04645 PF01218 Coproporphyrinogen III oxidase LGL88_04650 PF00583 Acetyltransferase (GNAT) family LGL88_04660 PF00589 Phage integrase family LGL88_04670 PF01966 HD domain LGL88_04670 PF13286 Phosphohydrolase-associated domain LGL88_04675 PF01966 HD domain LGL88_04675 PF13286 Phosphohydrolase-associated domain LGL88_04680 PF01966 HD domain LGL88_04680 PF13286 Phosphohydrolase-associated domain LGL88_04750 PF04076 Bacterial OB fold (BOF) protein LGL88_04755 PF06572 Protein of unknown function (DUF1131) LGL88_04760 PF04261 Dyp-type peroxidase family LGL88_04765 PF00701 Dihydrodipicolinate synthetase family LGL88_04770 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LGL88_04775 PF00480 ROK family LGL88_04780 PF04074 YhcH/YjgK/YiaL LGL88_04785 PF01380 SIS domain LGL88_04785 PF01418 Helix-turn-helix domain, rpiR family LGL88_04790 PF07690 Major Facilitator Superfamily LGL88_04800 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_04805 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_04810 PF00005 ABC transporter LGL88_04815 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_04820 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LGL88_04825 PF05524 PEP-utilising enzyme, N-terminal LGL88_04825 PF00391 PEP-utilising enzyme, mobile domain LGL88_04825 PF02896 PEP-utilising enzyme, TIM barrel domain LGL88_04830 PF00381 PTS HPr component phosphorylation site LGL88_04835 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_04845 PF04354 ZipA, C-terminal FtsZ-binding domain LGL88_04850 PF12826 Helix-hairpin-helix motif LGL88_04850 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LGL88_04850 PF00533 BRCA1 C Terminus (BRCT) domain LGL88_04850 PF01653 NAD-dependent DNA ligase adenylation domain LGL88_04850 PF03120 NAD-dependent DNA ligase OB-fold domain LGL88_04855 PF12843 Putative quorum-sensing-regulated virulence factor LGL88_04880 PF00749 tRNA synthetases class I (E and Q), catalytic domain LGL88_04925 PF07670 Nucleoside recognition LGL88_04925 PF07662 Na+ dependent nucleoside transporter C-terminus LGL88_04925 PF01773 Na+ dependent nucleoside transporter N-terminus LGL88_04930 PF01566 Natural resistance-associated macrophage protein LGL88_04940 PF03466 LysR substrate binding domain LGL88_04940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_04950 PF02685 Glucokinase LGL88_04955 PF07690 Major Facilitator Superfamily LGL88_04960 PF04397 LytTr DNA-binding domain LGL88_04960 PF00072 Response regulator receiver domain LGL88_04965 PF07694 5TMR of 5TMR-LYT LGL88_04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_04965 PF06580 Histidine kinase LGL88_04970 PF07350 Protein of unknown function (DUF1479) LGL88_04975 PF00155 Aminotransferase class I and II LGL88_04980 PF01292 Prokaryotic cytochrome b561 LGL88_04995 PF13406 Transglycosylase SLT domain LGL88_05000 PF03831 PhnA domain LGL88_05000 PF08274 PhnA Zinc-Ribbon LGL88_05060 PF14659 Phage integrase, N-terminal SAM-like domain LGL88_05060 PF13356 Arm DNA-binding domain LGL88_05060 PF00589 Phage integrase family LGL88_05070 PF00005 ABC transporter LGL88_05075 PF03379 CcmB protein LGL88_05080 PF01578 Cytochrome C assembly protein LGL88_05085 PF04995 Heme exporter protein D (CcmD) LGL88_05090 PF03100 CcmE LGL88_05095 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LGL88_05095 PF01578 Cytochrome C assembly protein LGL88_05100 PF08534 Redoxin LGL88_05105 PF03918 Cytochrome C biogenesis protein LGL88_05110 PF03918 Cytochrome C biogenesis protein LGL88_05115 PF04333 MlaA lipoprotein LGL88_05120 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LGL88_05125 PF04175 Protein of unknown function (DUF406) LGL88_05130 PF02803 Thiolase, C-terminal domain LGL88_05130 PF00108 Thiolase, N-terminal domain LGL88_05135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LGL88_05135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LGL88_05135 PF00378 Enoyl-CoA hydratase/isomerase LGL88_05140 PF00300 Histidine phosphatase superfamily (branch 1) LGL88_05145 PF01713 Smr domain LGL88_05150 PF05175 Methyltransferase small domain LGL88_05155 PF01264 Chorismate synthase LGL88_05160 PF03411 Penicillin-insensitive murein endopeptidase LGL88_05165 PF01925 Sulfite exporter TauE/SafE LGL88_05170 PF04315 Elongation factor P hydroxylase LGL88_05175 PF08891 YfcL protein LGL88_05180 PF01266 FAD dependent oxidoreductase LGL88_05180 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LGL88_05185 PF00109 Beta-ketoacyl synthase, N-terminal domain LGL88_05185 PF02801 Beta-ketoacyl synthase, C-terminal domain LGL88_05215 PF00578 AhpC/TSA family LGL88_05220 PF00155 Aminotransferase class I and II LGL88_05240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LGL88_05240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LGL88_05240 PF11890 Domain of unknown function (DUF3410) LGL88_05245 PF01118 Semialdehyde dehydrogenase, NAD binding domain LGL88_05245 PF02774 Semialdehyde dehydrogenase, dimerisation domain LGL88_05250 PF01416 tRNA pseudouridine synthase LGL88_05255 PF09335 SNARE associated Golgi protein LGL88_05260 PF01039 Carboxyl transferase domain LGL88_05260 PF17848 Acetyl-coA carboxylase zinc finger domain LGL88_05265 PF02875 Mur ligase family, glutamate ligase domain LGL88_05265 PF08245 Mur ligase middle domain LGL88_05270 PF05036 Sporulation related domain LGL88_05275 PF02674 Colicin V production protein LGL88_05280 PF00156 Phosphoribosyl transferase domain LGL88_05285 PF02441 Flavoprotein LGL88_05295 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_05300 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_05305 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_05310 PF00005 ABC transporter LGL88_05315 PF01370 NAD dependent epimerase/dehydratase family LGL88_05315 PF08338 Domain of unknown function (DUF1731) LGL88_05320 PF02798 Glutathione S-transferase, N-terminal domain LGL88_05320 PF00043 Glutathione S-transferase, C-terminal domain LGL88_05330 PF12850 Calcineurin-like phosphoesterase superfamily domain LGL88_05335 PF00293 NUDIX domain LGL88_05340 PF03611 PTS system sugar-specific permease component LGL88_05350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LGL88_05355 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LGL88_05355 PF00356 Bacterial regulatory proteins, lacI family LGL88_05360 PF01515 Phosphate acetyl/butaryl transferase LGL88_05360 PF07085 DRTGG domain LGL88_05365 PF00871 Acetokinase family LGL88_05370 PF04217 Protein of unknown function, DUF412 LGL88_05375 PF03887 YfbU domain LGL88_05385 PF02080 TrkA-C domain LGL88_05385 PF03600 Citrate transporter LGL88_05395 PF00155 Aminotransferase class I and II LGL88_05400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_05400 PF03466 LysR substrate binding domain LGL88_05405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LGL88_05410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LGL88_05415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LGL88_05415 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LGL88_05425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LGL88_05425 PF10531 SLBB domain LGL88_05425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LGL88_05430 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LGL88_05430 PF00384 Molybdopterin oxidoreductase LGL88_05430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LGL88_05430 PF01568 Molydopterin dinucleotide binding domain LGL88_05435 PF00146 NADH dehydrogenase LGL88_05440 PF12838 4Fe-4S dicluster domain LGL88_05445 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LGL88_05450 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LGL88_05455 PF00361 Proton-conducting membrane transporter LGL88_05455 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LGL88_05460 PF00361 Proton-conducting membrane transporter LGL88_05465 PF00361 Proton-conducting membrane transporter LGL88_05470 PF06496 Protein of unknown function (DUF1097) LGL88_05475 PF05957 Bacterial protein of unknown function (DUF883) LGL88_05480 PF00425 chorismate binding enzyme LGL88_05485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LGL88_05485 PF16582 Middle domain of thiamine pyrophosphate LGL88_05485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LGL88_05490 PF12697 Alpha/beta hydrolase family LGL88_05495 PF00378 Enoyl-CoA hydratase/isomerase LGL88_05500 PF13378 Enolase C-terminal domain-like LGL88_05505 PF00501 AMP-binding enzyme LGL88_05505 PF13193 AMP-binding enzyme C-terminal domain LGL88_05510 PF00199 Catalase LGL88_05510 PF06628 Catalase-related immune-responsive LGL88_05515 PF07437 YfaZ precursor LGL88_05520 PF03222 Tryptophan/tyrosine permease family LGL88_05530 PF00535 Glycosyl transferase family 2 LGL88_05535 PF04138 GtrA-like protein LGL88_05540 PF00994 Probable molybdopterin binding domain LGL88_05545 PF03974 Ecotin LGL88_05555 PF00111 2Fe-2S iron-sulfur cluster binding domain LGL88_05560 PF00268 Ribonucleotide reductase, small chain LGL88_05565 PF03477 ATP cone domain LGL88_05565 PF00317 Ribonucleotide reductase, all-alpha domain LGL88_05565 PF02867 Ribonucleotide reductase, barrel domain LGL88_05575 PF03989 DNA gyrase C-terminal domain, beta-propeller LGL88_05575 PF00521 DNA gyrase/topoisomerase IV, subunit A LGL88_05580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_05580 PF00512 His Kinase A (phospho-acceptor) domain LGL88_05580 PF09456 RcsC Alpha-Beta-Loop (ABL) LGL88_05580 PF00072 Response regulator receiver domain LGL88_05585 PF00072 Response regulator receiver domain LGL88_05585 PF00196 Bacterial regulatory proteins, luxR family LGL88_05590 PF16359 RcsD-ABL domain LGL88_05590 PF01627 Hpt domain LGL88_05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_05595 PF07690 Major Facilitator Superfamily LGL88_05600 PF00267 Gram-negative porin LGL88_05615 PF13302 Acetyltransferase (GNAT) domain LGL88_05620 PF00144 Beta-lactamase LGL88_05625 PF12706 Beta-lactamase superfamily domain LGL88_05630 PF06183 DinI-like family LGL88_05675 PF10065 Uncharacterized conserved protein (DUF2303) LGL88_05695 PF00717 Peptidase S24-like LGL88_05695 PF01381 Helix-turn-helix LGL88_05720 PF03354 Phage Terminase LGL88_05725 PF05869 DNA N-6-adenine-methyltransferase (Dam) LGL88_05745 PF06147 Protein of unknown function (DUF968) LGL88_05820 PF01343 Peptidase family S49 LGL88_05860 PF04984 Phage tail sheath protein subtilisin-like domain LGL88_05860 PF17482 Phage tail sheath C-terminal domain LGL88_05905 PF04865 Baseplate J-like protein LGL88_05930 PF11893 Domain of unknown function (DUF3413) LGL88_05930 PF00884 Sulfatase LGL88_05935 PF07208 Protein of unknown function (DUF1414) LGL88_05940 PF04245 37-kD nucleoid-associated bacterial protein LGL88_05945 PF01386 Ribosomal L25p family LGL88_05950 PF00271 Helicase conserved C-terminal domain LGL88_05950 PF04851 Type III restriction enzyme, res subunit LGL88_05955 PF00849 RNA pseudouridylate synthase LGL88_05955 PF01479 S4 domain LGL88_05960 PF07690 Major Facilitator Superfamily LGL88_05965 PF13989 YejG-like protein LGL88_05970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LGL88_05970 PF00005 ABC transporter LGL88_05975 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_05975 PF12911 N-terminal TM domain of oligopeptide transport permease C LGL88_05980 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_05985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LGL88_05990 PF12792 CSS motif domain associated with EAL LGL88_05990 PF00563 EAL domain LGL88_05995 PF00877 NlpC/P60 family LGL88_06000 PF01569 PAP2 superfamily LGL88_06005 PF02492 CobW/HypB/UreG, nucleotide-binding domain LGL88_06005 PF07683 Cobalamin synthesis protein cobW C-terminal domain LGL88_06015 PF01232 Mannitol dehydrogenase Rossmann domain LGL88_06015 PF08125 Mannitol dehydrogenase C-terminal domain LGL88_06020 PF03786 D-mannonate dehydratase (UxuA) LGL88_06025 PF09285 Elongation factor P, C-terminal LGL88_06025 PF08207 Elongation factor P (EF-P) KOW-like domain LGL88_06025 PF01132 Elongation factor P (EF-P) OB domain LGL88_06030 PF03222 Tryptophan/tyrosine permease family LGL88_06035 PF03692 Putative zinc- or iron-chelating domain LGL88_06040 PF18364 Molybdopterin oxidoreductase N-terminal domain LGL88_06040 PF01568 Molydopterin dinucleotide binding domain LGL88_06040 PF00384 Molybdopterin oxidoreductase LGL88_06045 PF03264 NapC/NirT cytochrome c family, N-terminal region LGL88_06050 PF00293 NUDIX domain LGL88_06055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LGL88_06055 PF00381 PTS HPr component phosphorylation site LGL88_06060 PF00294 pfkB family carbohydrate kinase LGL88_06065 PF02378 Phosphotransferase system, EIIC LGL88_06065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LGL88_06070 PF01261 Xylose isomerase-like TIM barrel LGL88_06075 PF03601 Conserved hypothetical protein 698 LGL88_06085 PF03466 LysR substrate binding domain LGL88_06085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_06090 PF00324 Amino acid permease LGL88_06100 PF01032 FecCD transport family LGL88_06105 PF00005 ABC transporter LGL88_06110 PF07715 TonB-dependent Receptor Plug Domain LGL88_06110 PF00593 TonB dependent receptor LGL88_06115 PF13520 Amino acid permease LGL88_06120 PF08411 Exonuclease C-terminal LGL88_06120 PF00929 Exonuclease LGL88_06125 PF00550 Phosphopantetheine attachment site LGL88_06125 PF07993 Male sterility protein LGL88_06125 PF00501 AMP-binding enzyme LGL88_06130 PF04632 Fusaric acid resistance protein family LGL88_06135 PF04363 Protein of unknown function (DUF496) LGL88_06150 PF08402 TOBE domain LGL88_06150 PF00005 ABC transporter LGL88_06155 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_06165 PF07690 Major Facilitator Superfamily LGL88_06170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_06170 PF07730 Histidine kinase LGL88_06170 PF05231 MASE1 LGL88_06175 PF00196 Bacterial regulatory proteins, luxR family LGL88_06175 PF00072 Response regulator receiver domain LGL88_06180 PF00072 Response regulator receiver domain LGL88_06180 PF12431 Transcriptional regulator LGL88_06185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_06185 PF00989 PAS fold LGL88_06185 PF17203 Single cache domain 3 LGL88_06185 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LGL88_06190 PF08218 Citrate lyase ligase C-terminal domain LGL88_06195 PF06857 Malonate decarboxylase delta subunit (MdcD) LGL88_06200 PF03328 HpcH/HpaI aldolase/citrate lyase family LGL88_06205 PF04223 Citrate lyase, alpha subunit (CitF) LGL88_06210 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase LGL88_06215 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LGL88_06220 PF00939 Sodium:sulfate symporter transmembrane region LGL88_06225 PF01648 4'-phosphopantetheinyl transferase superfamily LGL88_06225 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LGL88_06245 PF06167 Glucose-regulated metallo-peptidase M90 LGL88_06310 PF01381 Helix-turn-helix LGL88_06310 PF00717 Peptidase S24-like LGL88_06345 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LGL88_06345 PF17854 FtsK alpha domain LGL88_06345 PF09397 Ftsk gamma domain LGL88_06345 PF01580 FtsK/SpoIIIE family LGL88_06365 PF07102 Protein of unknown function (DUF1364) LGL88_06395 PF07282 Putative transposase DNA-binding domain LGL88_06395 PF12323 Helix-turn-helix domain LGL88_06395 PF01385 Probable transposase LGL88_06400 PF01797 Transposase IS200 like LGL88_06405 PF04971 Bacteriophage P21 holin S LGL88_06410 PF00959 Phage lysozyme LGL88_06415 PF03245 Bacteriophage Rz lysis protein LGL88_06515 PF08401 Domain of unknown function (DUF1738) LGL88_06515 PF18818 Metallopeptidase superfamily domain LGL88_06515 PF13362 Toprim domain LGL88_06535 PF14001 YdfZ protein LGL88_06550 PF00698 Acyl transferase domain LGL88_06550 PF08240 Alcohol dehydrogenase GroES-like domain LGL88_06550 PF00107 Zinc-binding dehydrogenase LGL88_06550 PF00109 Beta-ketoacyl synthase, N-terminal domain LGL88_06550 PF02801 Beta-ketoacyl synthase, C-terminal domain LGL88_06550 PF08659 KR domain LGL88_06550 PF00550 Phosphopantetheine attachment site LGL88_06550 PF14765 Polyketide synthase dehydratase LGL88_06550 PF16197 Ketoacyl-synthetase C-terminal extension LGL88_06555 PF02929 Beta galactosidase small chain LGL88_06555 PF16353 Domain of unknown function(DUF4981) LGL88_06555 PF00703 Glycosyl hydrolases family 2 LGL88_06555 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LGL88_06555 PF02837 Glycosyl hydrolases family 2, sugar binding domain LGL88_06560 PF00356 Bacterial regulatory proteins, lacI family LGL88_06570 PF00313 'Cold-shock' DNA-binding domain LGL88_06575 PF10781 Dextransucrase DSRB LGL88_06580 PF00672 HAMP domain LGL88_06580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LGL88_06580 PF02203 Tar ligand binding domain homologue LGL88_06585 PF02308 MgtC family LGL88_06595 PF00582 Universal stress protein family LGL88_06600 PF05247 Flagellar transcriptional activator (FlhD) LGL88_06605 PF05280 Flagellar transcriptional activator (FlhC) LGL88_06610 PF01618 MotA/TolQ/ExbB proton channel family LGL88_06615 PF13677 Membrane MotB of proton-channel complex MotA/MotB LGL88_06615 PF00691 OmpA family LGL88_06620 PF01584 CheW-like domain LGL88_06620 PF09078 CheY binding LGL88_06620 PF02895 Signal transducing histidine kinase, homodimeric domain LGL88_06620 PF01627 Hpt domain LGL88_06620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_06625 PF01584 CheW-like domain LGL88_06630 PF00672 HAMP domain LGL88_06630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LGL88_06630 PF02203 Tar ligand binding domain homologue LGL88_06635 PF02203 Tar ligand binding domain homologue LGL88_06635 PF00672 HAMP domain LGL88_06635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LGL88_06640 PF03705 CheR methyltransferase, all-alpha domain LGL88_06640 PF01739 CheR methyltransferase, SAM binding domain LGL88_06645 PF01339 CheB methylesterase LGL88_06645 PF00072 Response regulator receiver domain LGL88_06650 PF00072 Response regulator receiver domain LGL88_06655 PF04344 Chemotaxis phosphatase, CheZ LGL88_06660 PF01483 Proprotein convertase P-domain LGL88_06660 PF00082 Subtilase family LGL88_06665 PF01312 FlhB HrpN YscU SpaS Family LGL88_06670 PF00771 FHIPEP family LGL88_06675 PF06366 Flagellar protein FlhE LGL88_06680 PF05130 FlgN protein LGL88_06685 PF04316 Anti-sigma-28 factor, FlgM LGL88_06690 PF13144 Chaperone for flagella basal body P-ring formation LGL88_06690 PF17656 FlgA N-terminal domain LGL88_06695 PF00460 Flagella basal body rod protein LGL88_06700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LGL88_06700 PF00460 Flagella basal body rod protein LGL88_06705 PF03963 Flagellar hook capping protein - N-terminal region LGL88_06705 PF13860 FlgD Ig-like domain LGL88_06705 PF13861 FlgD Tudor-like domain LGL88_06710 PF07559 Flagellar basal body protein FlaE LGL88_06710 PF00460 Flagella basal body rod protein LGL88_06710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LGL88_06715 PF00460 Flagella basal body rod protein LGL88_06715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LGL88_06720 PF00460 Flagella basal body rod protein LGL88_06720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LGL88_06725 PF02107 Flagellar L-ring protein LGL88_06730 PF02119 Flagellar P-ring protein LGL88_06735 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LGL88_06735 PF10135 Rod binding protein LGL88_06740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LGL88_06740 PF00460 Flagella basal body rod protein LGL88_06745 PF00669 Bacterial flagellin N-terminal helical region LGL88_06750 PF01311 Bacterial export proteins, family 1 LGL88_06755 PF01313 Bacterial export proteins, family 3 LGL88_06760 PF00813 FliP family LGL88_06765 PF04347 Flagellar biosynthesis protein, FliO LGL88_06770 PF16973 Flagellar motor switch protein FliN N-terminal LGL88_06770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LGL88_06775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LGL88_06775 PF02154 Flagellar motor switch protein FliM LGL88_06780 PF03748 Flagellar basal body-associated protein FliL LGL88_06785 PF02120 Flagellar hook-length control protein FliK LGL88_06790 PF02050 Flagellar FliJ protein LGL88_06795 PF18269 T3SS EscN ATPase C-terminal domain LGL88_06795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LGL88_06800 PF02108 Flagellar assembly protein FliH LGL88_06805 PF01706 FliG C-terminal domain LGL88_06805 PF14841 FliG middle domain LGL88_06805 PF14842 FliG N-terminal domain LGL88_06810 PF01514 Secretory protein of YscJ/FliF family LGL88_06810 PF08345 Flagellar M-ring protein C-terminal LGL88_06815 PF02049 Flagellar hook-basal body complex protein FliE LGL88_06820 PF01223 DNA/RNA non-specific endonuclease LGL88_06825 PF07885 Ion channel LGL88_06825 PF02254 TrkA-N domain LGL88_06830 PF01966 HD domain LGL88_06835 PF12833 Helix-turn-helix domain LGL88_06840 PF05400 Flagellar protein FliT LGL88_06845 PF02561 Flagellar protein FliS LGL88_06850 PF07196 Flagellin hook IN motif LGL88_06850 PF07195 Flagellar hook-associated protein 2 C-terminus LGL88_06850 PF02465 Flagellar hook-associated protein 2 N-terminus LGL88_06855 PF00700 Bacterial flagellin C-terminal helical region LGL88_06855 PF00669 Bacterial flagellin N-terminal helical region LGL88_06855 PF08884 Flagellin D3 domain LGL88_06860 PF00700 Bacterial flagellin C-terminal helical region LGL88_06860 PF08884 Flagellin D3 domain LGL88_06860 PF00669 Bacterial flagellin N-terminal helical region LGL88_06865 PF08884 Flagellin D3 domain LGL88_06865 PF00669 Bacterial flagellin N-terminal helical region LGL88_06865 PF00700 Bacterial flagellin C-terminal helical region LGL88_06870 PF04542 Sigma-70 region 2 LGL88_06870 PF04539 Sigma-70 region 3 LGL88_06870 PF04545 Sigma-70, region 4 LGL88_06875 PF02899 Phage integrase, N-terminal SAM-like domain LGL88_06880 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_06885 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_06890 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_06895 PF00005 ABC transporter LGL88_06900 PF00171 Aldehyde dehydrogenase family LGL88_06900 PF14850 DNA-binding domain of Proline dehydrogenase LGL88_06900 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LGL88_06900 PF01619 Proline dehydrogenase LGL88_06905 PF00474 Sodium:solute symporter family LGL88_06910 PF18500 CadC C-terminal domain 1 LGL88_06910 PF00486 Transcriptional regulatory protein, C terminal LGL88_06915 PF13520 Amino acid permease LGL88_06920 PF01276 Orn/Lys/Arg decarboxylase, major domain LGL88_06920 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LGL88_06920 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LGL88_06925 PF00324 Amino acid permease LGL88_06945 PF10769 Protein of unknown function (DUF2594) LGL88_06950 PF00072 Response regulator receiver domain LGL88_06950 PF00196 Bacterial regulatory proteins, luxR family LGL88_06955 PF01541 GIY-YIG catalytic domain LGL88_06955 PF02151 UvrB/uvrC motif LGL88_06955 PF08459 UvrC Helix-hairpin-helix N-terminal LGL88_06960 PF01066 CDP-alcohol phosphatidyltransferase LGL88_06985 PF13333 Integrase core domain LGL88_06985 PF00665 Integrase core domain LGL88_06985 PF13276 HTH-like domain LGL88_06990 PF00672 HAMP domain LGL88_06990 PF02203 Tar ligand binding domain homologue LGL88_06990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LGL88_07000 PF00005 ABC transporter LGL88_07005 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_07020 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LGL88_07020 PF00034 Cytochrome c LGL88_07030 PF13673 Acetyltransferase (GNAT) domain LGL88_07060 PF04960 Glutaminase LGL88_07065 PF13520 Amino acid permease LGL88_07070 PF00282 Pyridoxal-dependent decarboxylase conserved domain LGL88_07075 PF00849 RNA pseudouridylate synthase LGL88_07090 PF13520 Amino acid permease LGL88_07100 PF03553 Na+/H+ antiporter family LGL88_07115 PF00849 RNA pseudouridylate synthase LGL88_07115 PF01479 S4 domain LGL88_07120 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LGL88_07125 PF02378 Phosphotransferase system, EIIC LGL88_07130 PF00232 Glycosyl hydrolase family 1 LGL88_07135 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LGL88_07140 PF07883 Cupin domain LGL88_07140 PF12833 Helix-turn-helix domain LGL88_07145 PF04794 YdjC-like protein LGL88_07155 PF00313 'Cold-shock' DNA-binding domain LGL88_07160 PF00313 'Cold-shock' DNA-binding domain LGL88_07165 PF08241 Methyltransferase domain LGL88_07180 PF07478 D-ala D-ala ligase C-terminus LGL88_07180 PF01820 D-ala D-ala ligase N-terminus LGL88_07185 PF06411 HdeA/HdeB family LGL88_07195 PF03372 Endonuclease/Exonuclease/phosphatase family LGL88_07200 PF00563 EAL domain LGL88_07200 PF01590 GAF domain LGL88_07200 PF00990 Diguanylate cyclase, GGDEF domain LGL88_07200 PF00360 Phytochrome region LGL88_07210 PF00664 ABC transporter transmembrane region LGL88_07210 PF00005 ABC transporter LGL88_07215 PF13520 Amino acid permease LGL88_07230 PF12833 Helix-turn-helix domain LGL88_07235 PF10964 Protein of unknown function (DUF2766) LGL88_07240 PF13996 YobH-like protein LGL88_07245 PF13998 MgrB protein LGL88_07250 PF13974 YebO-like protein LGL88_07265 PF00324 Amino acid permease LGL88_07270 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LGL88_07275 PF10736 Protein of unknown function (DUF2627) LGL88_07280 PF00313 'Cold-shock' DNA-binding domain LGL88_07285 PF02578 Multi-copper polyphenol oxidoreductase laccase LGL88_07290 PF03717 Penicillin-binding Protein dimerisation domain LGL88_07290 PF00905 Penicillin binding protein transpeptidase domain LGL88_07295 PF13847 Methyltransferase domain LGL88_07315 PF07690 Major Facilitator Superfamily LGL88_07320 PF13193 AMP-binding enzyme C-terminal domain LGL88_07320 PF00668 Condensation domain LGL88_07320 PF00550 Phosphopantetheine attachment site LGL88_07320 PF00501 AMP-binding enzyme LGL88_07325 PF05199 GMC oxidoreductase LGL88_07325 PF00732 GMC oxidoreductase LGL88_07335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LGL88_07335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LGL88_07335 PF02770 Acyl-CoA dehydrogenase, middle domain LGL88_07350 PF02441 Flavoprotein LGL88_07355 PF02659 Putative manganese efflux pump LGL88_07360 PF06173 Protein of unknown function (DUF986) LGL88_07365 PF03613 PTS system mannose/fructose/sorbose family IID component LGL88_07370 PF03609 PTS system sorbose-specific iic component LGL88_07375 PF03610 PTS system fructose IIA component LGL88_07375 PF03830 PTS system sorbose subfamily IIB component LGL88_07380 PF03471 Transporter associated domain LGL88_07380 PF03741 Integral membrane protein TerC family LGL88_07385 PF03313 Serine dehydratase alpha chain LGL88_07385 PF03315 Serine dehydratase beta chain LGL88_07390 PF00293 NUDIX domain LGL88_07395 PF04715 Anthranilate synthase component I, N terminal region LGL88_07395 PF00425 chorismate binding enzyme LGL88_07400 PF03701 Uncharacterised protein family (UPF0181) LGL88_07405 PF02222 ATP-grasp domain LGL88_07410 PF03880 DbpA RNA binding domain LGL88_07410 PF00270 DEAD/DEAH box helicase LGL88_07410 PF00271 Helicase conserved C-terminal domain LGL88_07415 PF07130 YebG protein LGL88_07420 PF04266 ASCH domain LGL88_07425 PF13995 YebF-like protein LGL88_07430 PF00326 Prolyl oligopeptidase family LGL88_07430 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LGL88_07435 PF00929 Exonuclease LGL88_07440 PF00561 alpha/beta hydrolase fold LGL88_07445 PF06440 DNA polymerase III, theta subunit LGL88_07450 PF00210 Ferritin-like domain LGL88_07455 PF04234 CopC domain LGL88_07460 PF05425 Copper resistance protein D LGL88_07465 PF10709 Protein of unknown function (DUF2511) LGL88_07470 PF00589 Phage integrase family LGL88_07470 PF02899 Phage integrase, N-terminal SAM-like domain LGL88_07475 PF04606 Ogr/Delta-like zinc finger LGL88_07515 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LGL88_07520 PF07484 Phage Tail Collar Domain LGL88_07640 PF05840 Bacteriophage replication gene A protein (GPA) LGL88_07680 PF00533 BRCA1 C Terminus (BRCT) domain LGL88_07680 PF01653 NAD-dependent DNA ligase adenylation domain LGL88_07680 PF03120 NAD-dependent DNA ligase OB-fold domain LGL88_07690 PF00144 Beta-lactamase LGL88_07710 PF10753 Toxin GhoT_OrtT LGL88_07715 PF03783 Curli production assembly/transport component CsgG LGL88_07725 PF05643 Putative bacterial lipoprotein (DUF799) LGL88_07750 PF07351 Protein of unknown function (DUF1480) LGL88_07755 PF00563 EAL domain LGL88_07755 PF01590 GAF domain LGL88_07755 PF00990 Diguanylate cyclase, GGDEF domain LGL88_07755 PF00360 Phytochrome region LGL88_07760 PF02470 MlaD protein LGL88_07765 PF04403 Paraquat-inducible protein A LGL88_07770 PF13185 GAF domain LGL88_07775 PF17516 ProQ C-terminal domain LGL88_07775 PF04352 ProQ/FINO family LGL88_07780 PF00595 PDZ domain LGL88_07780 PF03572 Peptidase family S41 LGL88_07780 PF17804 Tail specific protease N-terminal domain LGL88_07780 PF11818 C-terminal domain of tail specific protease (DUF3340) LGL88_07785 PF01435 Peptidase family M48 LGL88_07795 PF07690 Major Facilitator Superfamily LGL88_07800 PF09339 IclR helix-turn-helix domain LGL88_07800 PF01614 Bacterial transcriptional regulator LGL88_07805 PF01510 N-acetylmuramoyl-L-alanine amidase LGL88_07810 PF00375 Sodium:dicarboxylate symporter family LGL88_07815 PF04307 LexA-binding, inner membrane-associated putative hydrolase LGL88_07820 PF13419 Haloacid dehalogenase-like hydrolase LGL88_07825 PF14002 YniB-like protein LGL88_07830 PF03881 Fructosamine kinase LGL88_07835 PF00950 ABC 3 transport family LGL88_07840 PF00950 ABC 3 transport family LGL88_07845 PF00005 ABC transporter LGL88_07850 PF01297 Zinc-uptake complex component A periplasmic LGL88_07855 PF01464 Transglycosylase SLT domain LGL88_07860 PF01914 MarC family integral membrane protein LGL88_07890 PF03129 Anticodon binding domain LGL88_07890 PF02824 TGS domain LGL88_07890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LGL88_07890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LGL88_07895 PF05198 Translation initiation factor IF-3, N-terminal domain LGL88_07895 PF00707 Translation initiation factor IF-3, C-terminal domain LGL88_07900 PF01632 Ribosomal protein L35 LGL88_07905 PF00453 Ribosomal protein L20 LGL88_07915 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LGL88_07915 PF01409 tRNA synthetases class II core domain (F) LGL88_07920 PF03484 tRNA synthetase B5 domain LGL88_07920 PF03147 Ferredoxin-fold anticodon binding domain LGL88_07920 PF01588 Putative tRNA binding domain LGL88_07920 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LGL88_07920 PF03483 B3/4 domain LGL88_07925 PF00216 Bacterial DNA-binding protein LGL88_07935 PF04606 Ogr/Delta-like zinc finger LGL88_07950 PF02661 Fic/DOC family LGL88_07965 PF02899 Phage integrase, N-terminal SAM-like domain LGL88_07965 PF00589 Phage integrase family LGL88_07970 PF01032 FecCD transport family LGL88_07975 PF00005 ABC transporter LGL88_07980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LGL88_07985 PF00535 Glycosyl transferase family 2 LGL88_07990 PF01370 NAD dependent epimerase/dehydratase family LGL88_07990 PF00551 Formyl transferase LGL88_07990 PF02911 Formyl transferase, C-terminal domain LGL88_07995 PF01522 Polysaccharide deacetylase LGL88_08000 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LGL88_08005 PF00892 EamA-like transporter family LGL88_08015 PF00877 NlpC/P60 family LGL88_08020 PF03099 Biotin/lipoate A/B protein ligase family LGL88_08020 PF10437 Bacterial lipoate protein ligase C-terminus LGL88_08025 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LGL88_08030 PF00005 ABC transporter LGL88_08035 PF01032 FecCD transport family LGL88_08040 PF01497 Periplasmic binding protein LGL88_08045 PF05171 Haemin-degrading HemS.ChuX domain LGL88_08050 PF07715 TonB-dependent Receptor Plug Domain LGL88_08050 PF00593 TonB dependent receptor LGL88_08055 PF10636 Hemin uptake protein hemP LGL88_08060 PF00793 DAHP synthetase I family LGL88_08065 PF03618 Kinase/pyrophosphorylase LGL88_08070 PF00391 PEP-utilising enzyme, mobile domain LGL88_08070 PF02896 PEP-utilising enzyme, TIM barrel domain LGL88_08070 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LGL88_08080 PF01594 AI-2E family transporter LGL88_08085 PF01565 FAD binding domain LGL88_08085 PF13183 4Fe-4S dicluster domain LGL88_08085 PF02913 FAD linked oxidases, C-terminal domain LGL88_08090 PF03061 Thioesterase superfamily LGL88_08095 PF01521 Iron-sulphur cluster biosynthesis LGL88_08100 PF01458 Uncharacterized protein family (UPF0051) LGL88_08105 PF00005 ABC transporter LGL88_08110 PF01458 Uncharacterized protein family (UPF0051) LGL88_08115 PF00266 Aminotransferase class-V LGL88_08120 PF02657 Fe-S metabolism associated domain LGL88_08125 PF17969 L,D-transpeptidase C-terminal domain LGL88_08125 PF03734 L,D-transpeptidase catalytic domain LGL88_08125 PF01476 LysM domain LGL88_08130 PF04728 Lipoprotein leucine-zipper LGL88_08135 PF00224 Pyruvate kinase, barrel domain LGL88_08135 PF02887 Pyruvate kinase, alpha/beta domain LGL88_08155 PF01554 MatE LGL88_08160 PF00677 Lumazine binding domain LGL88_08170 PF07690 Major Facilitator Superfamily LGL88_08175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_08175 PF03466 LysR substrate binding domain LGL88_08180 PF00356 Bacterial regulatory proteins, lacI family LGL88_08190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LGL88_08190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LGL88_08195 PF00877 NlpC/P60 family LGL88_08200 PF00462 Glutaredoxin LGL88_08205 PF00929 Exonuclease LGL88_08210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LGL88_08215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LGL88_08220 PF00440 Bacterial regulatory proteins, tetR family LGL88_08220 PF16925 Tetracyclin repressor-like, C-terminal domain LGL88_08225 PF00884 Sulfatase LGL88_08225 PF08019 Phosphoethanolamine transferase EptA/EptB LGL88_08230 PF06945 Protein of unknown function (DUF1289) LGL88_08235 PF00248 Aldo/keto reductase family LGL88_08245 PF01047 MarR family LGL88_08250 PF05433 Glycine zipper 2TM domain LGL88_08255 PF03702 Anhydro-N-acetylmuramic acid kinase LGL88_08260 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LGL88_08260 PF01243 Pyridoxamine 5'-phosphate oxidase LGL88_08265 PF01479 S4 domain LGL88_08265 PF00579 tRNA synthetases class I (W and Y) LGL88_08270 PF08543 Phosphomethylpyrimidine kinase LGL88_08275 PF02798 Glutathione S-transferase, N-terminal domain LGL88_08275 PF00043 Glutathione S-transferase, C-terminal domain LGL88_08280 PF11656 YjbD family (DUF3811) LGL88_08290 PF04893 Yip1 domain LGL88_08300 PF00226 DnaJ domain LGL88_08300 PF01556 DnaJ C terminal domain LGL88_08310 PF00854 POT family LGL88_08320 PF00005 ABC transporter LGL88_08325 PF00005 ABC transporter LGL88_08325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LGL88_08330 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_08330 PF12911 N-terminal TM domain of oligopeptide transport permease C LGL88_08335 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_08340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LGL88_08345 PF02917 Pertussis toxin, subunit 1 LGL88_08355 PF02954 Bacterial regulatory protein, Fis family LGL88_08355 PF00158 Sigma-54 interaction domain LGL88_08360 PF04012 PspA/IM30 family LGL88_08365 PF06667 Phage shock protein B LGL88_08370 PF04024 PspC domain LGL88_08380 PF04317 YcjX-like family, DUF463 LGL88_08385 PF05128 Domain of unknown function (DUF697) LGL88_08390 PF08808 RES domain LGL88_08395 PF09722 Protein of unknown function (DUF2384) LGL88_08400 PF00158 Sigma-54 interaction domain LGL88_08400 PF18024 Helix-turn-helix domain LGL88_08405 PF08534 Redoxin LGL88_08410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LGL88_08410 PF13378 Enolase C-terminal domain-like LGL88_08415 PF00246 Zinc carboxypeptidase LGL88_08420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LGL88_08425 PF01544 CorA-like Mg2+ transporter protein LGL88_08430 PF01171 PP-loop family LGL88_08435 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LGL88_08435 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LGL88_08435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LGL88_08435 PF10371 Domain of unknown function LGL88_08435 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LGL88_08440 PF00893 Small Multidrug Resistance protein LGL88_08445 PF02308 MgtC family LGL88_08450 PF03891 Domain of unknown function (DUF333) LGL88_08455 PF03724 META domain LGL88_08460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LGL88_08460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LGL88_08465 PF11739 Dicarboxylate transport LGL88_08475 PF13617 YnbE-like lipoprotein LGL88_08480 PF07027 Protein of unknown function (DUF1318) LGL88_08485 PF02525 Flavodoxin-like fold LGL88_08490 PF11898 Domain of unknown function (DUF3418) LGL88_08490 PF04408 Helicase associated domain (HA2) LGL88_08490 PF00271 Helicase conserved C-terminal domain LGL88_08490 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LGL88_08490 PF00270 DEAD/DEAH box helicase LGL88_08495 PF00089 Trypsin LGL88_08505 PF01161 Phosphatidylethanolamine-binding protein LGL88_08510 PF12833 Helix-turn-helix domain LGL88_08515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LGL88_08520 PF00080 Copper/zinc superoxide dismutase (SODC) LGL88_08525 PF00672 HAMP domain LGL88_08525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_08525 PF00512 His Kinase A (phospho-acceptor) domain LGL88_08530 PF00072 Response regulator receiver domain LGL88_08530 PF00486 Transcriptional regulatory protein, C terminal LGL88_08540 PF13520 Amino acid permease LGL88_08545 PF07338 Protein of unknown function (DUF1471) LGL88_08550 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LGL88_08550 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LGL88_08550 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LGL88_08555 PF02233 NAD(P) transhydrogenase beta subunit LGL88_08560 PF01261 Xylose isomerase-like TIM barrel LGL88_08565 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LGL88_08570 PF00596 Class II Aldolase and Adducin N-terminal domain LGL88_08575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LGL88_08580 PF03611 PTS system sugar-specific permease component LGL88_08585 PF08220 DeoR-like helix-turn-helix domain LGL88_08585 PF00455 DeoR C terminal sensor domain LGL88_08595 PF00582 Universal stress protein family LGL88_08600 PF13545 Crp-like helix-turn-helix domain LGL88_08600 PF00027 Cyclic nucleotide-binding domain LGL88_08605 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LGL88_08605 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LGL88_08610 PF06445 GyrI-like small molecule binding domain LGL88_08620 PF13419 Haloacid dehalogenase-like hydrolase LGL88_08660 PF01048 Phosphorylase superfamily LGL88_08660 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LGL88_08675 PF01510 N-acetylmuramoyl-L-alanine amidase LGL88_08680 PF00106 short chain dehydrogenase LGL88_08685 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LGL88_08690 PF06932 Protein of unknown function (DUF1283) LGL88_08695 PF06649 Protein of unknown function (DUF1161) LGL88_08700 PF00654 Voltage gated chloride channel LGL88_08710 PF00480 ROK family LGL88_08720 PF01526 Tn3 transposase DDE domain LGL88_08720 PF13700 Domain of unknown function (DUF4158) LGL88_08730 PF05472 DNA replication terminus site-binding protein (Ter protein) LGL88_08735 PF10415 Fumarase C C-terminus LGL88_08735 PF00206 Lyase LGL88_08740 PF01238 Phosphomannose isomerase type I LGL88_08745 PF06097 Bacterial protein of unknown function (DUF945) LGL88_08755 PF00239 Resolvase, N terminal domain LGL88_08755 PF02796 Helix-turn-helix domain of resolvase LGL88_08765 PF00962 Adenosine/AMP deaminase LGL88_08770 PF13593 SBF-like CPA transporter family (DUF4137) LGL88_08775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LGL88_08775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LGL88_08780 PF09313 Domain of unknown function (DUF1971) LGL88_08780 PF03848 Tellurite resistance protein TehB LGL88_08785 PF01268 Formate--tetrahydrofolate ligase LGL88_08790 PF10754 Protein of unknown function (DUF2569) LGL88_08795 PF02508 Rnf-Nqr subunit, membrane protein LGL88_08800 PF04060 Putative Fe-S cluster LGL88_08805 PF13237 4Fe-4S dicluster domain LGL88_08805 PF13375 RnfC Barrel sandwich hybrid domain LGL88_08805 PF10531 SLBB domain LGL88_08805 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LGL88_08810 PF06445 GyrI-like small molecule binding domain LGL88_08810 PF12833 Helix-turn-helix domain LGL88_08815 PF03116 NQR2, RnfD, RnfE family LGL88_08820 PF04205 FMN-binding domain LGL88_08825 PF02508 Rnf-Nqr subunit, membrane protein LGL88_08830 PF10576 Iron-sulfur binding domain of endonuclease III LGL88_08830 PF00633 Helix-hairpin-helix motif LGL88_08830 PF00730 HhH-GPD superfamily base excision DNA repair protein LGL88_08835 PF08206 Ribonuclease B OB domain LGL88_08835 PF00773 RNB domain LGL88_08835 PF00575 S1 RNA binding domain LGL88_08840 PF08447 PAS fold LGL88_08840 PF05231 MASE1 LGL88_08840 PF00990 Diguanylate cyclase, GGDEF domain LGL88_08840 PF00563 EAL domain LGL88_08840 PF08448 PAS fold LGL88_08840 PF13426 PAS domain LGL88_08845 PF00923 Transaldolase/Fructose-6-phosphate aldolase LGL88_08850 PF05433 Glycine zipper 2TM domain LGL88_08855 PF01253 Translation initiation factor SUI1 LGL88_08860 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LGL88_08865 PF07338 Protein of unknown function (DUF1471) LGL88_08905 PF03412 Peptidase C39 family LGL88_08905 PF00005 ABC transporter LGL88_08905 PF00664 ABC transporter transmembrane region LGL88_08910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LGL88_08910 PF00529 HlyD membrane-fusion protein of T1SS LGL88_08915 PF00535 Glycosyl transferase family 2 LGL88_08920 PF12918 TcdB toxin N-terminal helical domain LGL88_08920 PF12919 TcdA/TcdB catalytic glycosyltransferase domain LGL88_08920 PF01473 Putative cell wall binding repeat LGL88_08920 PF12920 TcdA/TcdB pore forming domain LGL88_08920 PF11713 Peptidase C80 family LGL88_08955 PF18073 Rubredoxin metal binding domain LGL88_08960 PF06305 Lipopolysaccharide assembly protein A domain LGL88_08965 PF01569 PAP2 superfamily LGL88_08970 PF00925 GTP cyclohydrolase II LGL88_08975 PF00694 Aconitase C-terminal domain LGL88_08975 PF00330 Aconitase family (aconitate hydratase) LGL88_08995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_08995 PF03466 LysR substrate binding domain LGL88_09000 PF01131 DNA topoisomerase LGL88_09000 PF01751 Toprim domain LGL88_09000 PF01396 Topoisomerase DNA binding C4 zinc finger LGL88_09000 PF08272 Topoisomerase I zinc-ribbon-like LGL88_09005 PF10692 Protein of unknown function (DUF2498) LGL88_09010 PF01343 Peptidase family S49 LGL88_09010 PF08496 Peptidase family S49 N-terminal LGL88_09015 PF00106 short chain dehydrogenase LGL88_09020 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LGL88_09025 PF00849 RNA pseudouridylate synthase LGL88_09025 PF01479 S4 domain LGL88_09030 PF01300 Telomere recombination LGL88_09035 PF02811 PHP domain LGL88_09040 PF04715 Anthranilate synthase component I, N terminal region LGL88_09040 PF00425 chorismate binding enzyme LGL88_09045 PF00117 Glutamine amidotransferase class-I LGL88_09050 PF02885 Glycosyl transferase family, helical bundle domain LGL88_09050 PF00591 Glycosyl transferase family, a/b domain LGL88_09055 PF00218 Indole-3-glycerol phosphate synthase LGL88_09055 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LGL88_09060 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_09065 PF00290 Tryptophan synthase alpha chain LGL88_09075 PF03922 OmpW family LGL88_09080 PF03692 Putative zinc- or iron-chelating domain LGL88_09090 PF01740 STAS domain LGL88_09090 PF00916 Sulfate permease family LGL88_09095 PF04279 Intracellular septation protein A LGL88_09100 PF03061 Thioesterase superfamily LGL88_09105 PF03544 Gram-negative bacterial TonB protein C-terminal LGL88_09125 PF00577 Outer membrane usher protein LGL88_09125 PF13954 PapC N-terminal domain LGL88_09125 PF13953 PapC C-terminal domain LGL88_09130 PF02753 Pili assembly chaperone PapD, C-terminal domain LGL88_09130 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LGL88_09140 PF00486 Transcriptional regulatory protein, C terminal LGL88_09155 PF03795 YCII-related domain LGL88_09175 PF13091 PLD-like domain LGL88_09175 PF13396 Phospholipase_D-nuclease N-terminal LGL88_09180 PF04269 Protein of unknown function, DUF440 LGL88_09185 PF00005 ABC transporter LGL88_09185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LGL88_09190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LGL88_09190 PF00005 ABC transporter LGL88_09195 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_09195 PF12911 N-terminal TM domain of oligopeptide transport permease C LGL88_09200 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_09205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LGL88_09210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LGL88_09215 PF01914 MarC family integral membrane protein LGL88_09220 PF00171 Aldehyde dehydrogenase family LGL88_09220 PF00465 Iron-containing alcohol dehydrogenase LGL88_09225 PF00265 Thymidine kinase LGL88_09230 PF00816 H-NS histone family LGL88_09235 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LGL88_09235 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LGL88_09235 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LGL88_09240 PF00072 Response regulator receiver domain LGL88_09245 PF01734 Patatin-like phospholipase LGL88_09250 PF02810 SEC-C motif LGL88_09255 PF01842 ACT domain LGL88_09255 PF00551 Formyl transferase LGL88_09275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_09275 PF03466 LysR substrate binding domain LGL88_09285 PF03372 Endonuclease/Exonuclease/phosphatase family LGL88_09290 PF00293 NUDIX domain LGL88_09295 PF07383 Protein of unknown function (DUF1496) LGL88_09300 PF01751 Toprim domain LGL88_09300 PF01131 DNA topoisomerase LGL88_09305 PF00586 AIR synthase related protein, N-terminal domain LGL88_09305 PF02769 AIR synthase related protein, C-terminal domain LGL88_09310 PF00881 Nitroreductase family LGL88_09315 PF01343 Peptidase family S49 LGL88_09320 PF00710 Asparaginase, N-terminal LGL88_09320 PF17763 Glutaminase/Asparaginase C-terminal domain LGL88_09325 PF00857 Isochorismatase family LGL88_09330 PF07023 Protein of unknown function (DUF1315) LGL88_09335 PF01641 SelR domain LGL88_09340 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LGL88_09340 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LGL88_09345 PF01263 Aldose 1-epimerase LGL88_09350 PF00884 Sulfatase LGL88_09355 PF06629 MltA-interacting protein MipA LGL88_09365 PF06798 PrkA serine protein kinase C-terminal domain LGL88_09365 PF08298 PrkA AAA domain LGL88_09370 PF04285 Protein of unknown function (DUF444) LGL88_09375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LGL88_09375 PF00205 Thiamine pyrophosphate enzyme, central domain LGL88_09375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LGL88_09380 PF03306 Alpha-acetolactate decarboxylase LGL88_09385 PF03466 LysR substrate binding domain LGL88_09385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_09390 PF00563 EAL domain LGL88_09390 PF13426 PAS domain LGL88_09390 PF00990 Diguanylate cyclase, GGDEF domain LGL88_09400 PF07690 Major Facilitator Superfamily LGL88_09405 PF00842 Alanine racemase, C-terminal domain LGL88_09405 PF01168 Alanine racemase, N-terminal domain LGL88_09410 PF01266 FAD dependent oxidoreductase LGL88_09415 PF04293 SpoVR like protein LGL88_09420 PF07840 FadR C-terminal domain LGL88_09420 PF00392 Bacterial regulatory proteins, gntR family LGL88_09425 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LGL88_09430 PF02600 Disulfide bond formation protein DsbB LGL88_09445 PF03692 Putative zinc- or iron-chelating domain LGL88_09450 PF01557 Fumarylacetoacetate (FAA) hydrolase family LGL88_09455 PF05166 YcgL domain LGL88_09460 PF03775 Septum formation inhibitor MinC, C-terminal domain LGL88_09460 PF05209 Septum formation inhibitor MinC, N-terminal domain LGL88_09465 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LGL88_09470 PF03776 Septum formation topological specificity factor MinE LGL88_09475 PF01612 3'-5' exonuclease LGL88_09475 PF00570 HRDC domain LGL88_09480 PF00501 AMP-binding enzyme LGL88_09480 PF13193 AMP-binding enzyme C-terminal domain LGL88_09485 PF03843 Outer membrane lipoprotein Slp family LGL88_09490 PF00814 Glycoprotease family LGL88_09495 PF13307 Helicase C-terminal domain LGL88_09495 PF04851 Type III restriction enzyme, res subunit LGL88_09500 PF01042 Endoribonuclease L-PSP LGL88_09505 PF00893 Small Multidrug Resistance protein LGL88_09510 PF00893 Small Multidrug Resistance protein LGL88_09515 PF01081 KDPG and KHG aldolase LGL88_09520 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LGL88_09520 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LGL88_09525 PF01418 Helix-turn-helix domain, rpiR family LGL88_09525 PF01380 SIS domain LGL88_09530 PF00224 Pyruvate kinase, barrel domain LGL88_09530 PF02887 Pyruvate kinase, alpha/beta domain LGL88_09535 PF03279 Bacterial lipid A biosynthesis acyltransferase LGL88_09540 PF01476 LysM domain LGL88_09540 PF08525 Opacity-associated protein A N-terminal motif LGL88_09540 PF01551 Peptidase family M23 LGL88_09545 PF01297 Zinc-uptake complex component A periplasmic LGL88_09550 PF00005 ABC transporter LGL88_09555 PF00950 ABC 3 transport family LGL88_09560 PF00854 POT family LGL88_09565 PF17864 RuvB AAA lid domain LGL88_09565 PF05496 Holliday junction DNA helicase RuvB P-loop domain LGL88_09565 PF05491 RuvB C-terminal winged helix domain LGL88_09570 PF07499 RuvA, C-terminal domain LGL88_09570 PF01330 RuvA N terminal domain LGL88_09575 PF02075 Crossover junction endodeoxyribonuclease RuvC LGL88_09580 PF01709 Transcriptional regulator LGL88_09585 PF00293 NUDIX domain LGL88_09590 PF02938 GAD domain LGL88_09590 PF00152 tRNA synthetases class II (D, K and N) LGL88_09590 PF01336 OB-fold nucleic acid binding domain LGL88_09600 PF01904 Protein of unknown function DUF72 LGL88_09605 PF01124 MAPEG family LGL88_09610 PF13649 Methyltransferase domain LGL88_09615 PF08003 Protein of unknown function (DUF1698) LGL88_09620 PF03932 CutC family LGL88_09625 PF06185 YecM protein LGL88_09630 PF03485 Arginyl tRNA synthetase N terminal domain LGL88_09630 PF00750 tRNA synthetases class I (R) LGL88_09630 PF05746 DALR anticodon binding domain LGL88_09640 PF13332 Hemagglutinin repeat LGL88_09640 PF05860 haemagglutination activity domain LGL88_09645 PF08479 POTRA domain, ShlB-type LGL88_09645 PF17287 POTRA domain LGL88_09645 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LGL88_09650 PF03023 Lipid II flippase MurJ LGL88_09655 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LGL88_09660 PF04337 Protein of unknown function, DUF480 LGL88_09665 PF13302 Acetyltransferase (GNAT) domain LGL88_09670 PF07690 Major Facilitator Superfamily LGL88_09680 PF07273 Protein of unknown function (DUF1439) LGL88_09685 PF02613 Nitrate reductase delta subunit LGL88_09690 PF02811 PHP domain LGL88_09695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LGL88_09700 PF00854 POT family LGL88_09710 PF03009 Glycerophosphoryl diester phosphodiesterase family LGL88_09720 PF00990 Diguanylate cyclase, GGDEF domain LGL88_09725 PF01740 STAS domain LGL88_09725 PF00916 Sulfate permease family LGL88_09730 PF00793 DAHP synthetase I family LGL88_09735 PF13369 Transglutaminase-like superfamily LGL88_09740 PF04247 Invasion gene expression up-regulator, SirB LGL88_09745 PF13847 Methyltransferase domain LGL88_09745 PF17827 PrmC N-terminal domain LGL88_09750 PF03462 PCRF domain LGL88_09750 PF00472 RF-1 domain LGL88_09755 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LGL88_09755 PF01488 Shikimate / quinate 5-dehydrogenase LGL88_09755 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LGL88_09760 PF03550 Outer membrane lipoprotein LolB LGL88_09765 PF08544 GHMP kinases C terminal LGL88_09765 PF00288 GHMP kinases N terminal domain LGL88_09770 PF14572 Phosphoribosyl synthetase-associated domain LGL88_09770 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LGL88_09775 PF10762 Protein of unknown function (DUF2583) LGL88_09780 PF01195 Peptidyl-tRNA hydrolase LGL88_09790 PF01926 50S ribosome-binding GTPase LGL88_09790 PF06071 Protein of unknown function (DUF933) LGL88_09805 PF01590 GAF domain LGL88_09805 PF02954 Bacterial regulatory protein, Fis family LGL88_09805 PF00158 Sigma-54 interaction domain LGL88_09810 PF02769 AIR synthase related protein, C-terminal domain LGL88_09810 PF00586 AIR synthase related protein, N-terminal domain LGL88_09815 PF01924 Hydrogenase formation hypA family LGL88_09820 PF01455 HupF/HypC family LGL88_09825 PF02492 CobW/HypB/UreG, nucleotide-binding domain LGL88_09830 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LGL88_09835 PF11046 Transcriptional repressor of hyc and hyp operons LGL88_09840 PF13247 4Fe-4S dicluster domain LGL88_09845 PF00361 Proton-conducting membrane transporter LGL88_09850 PF00146 NADH dehydrogenase LGL88_09855 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LGL88_09855 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LGL88_09855 PF00374 Nickel-dependent hydrogenase LGL88_09860 PF12838 4Fe-4S dicluster domain LGL88_09865 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LGL88_09870 PF07450 Formate hydrogenlyase maturation protein HycH LGL88_09875 PF01750 Hydrogenase maturation protease LGL88_09880 PF12800 4Fe-4S binding domain LGL88_09880 PF13247 4Fe-4S dicluster domain LGL88_09885 PF00384 Molybdopterin oxidoreductase LGL88_09885 PF01568 Molydopterin dinucleotide binding domain LGL88_09885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LGL88_09890 PF01300 Telomere recombination LGL88_09890 PF07503 HypF finger LGL88_09890 PF00708 Acylphosphatase LGL88_09890 PF17788 HypF Kae1-like domain LGL88_09895 PF03824 High-affinity nickel-transport protein LGL88_09905 PF03466 LysR substrate binding domain LGL88_09905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_09910 PF05962 HutD LGL88_09915 PF01979 Amidohydrolase family LGL88_09920 PF00392 Bacterial regulatory proteins, gntR family LGL88_09920 PF07702 UTRA domain LGL88_09925 PF01979 Amidohydrolase family LGL88_09935 PF00267 Gram-negative porin LGL88_09940 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LGL88_09945 PF04996 Succinylarginine dihydrolase LGL88_09950 PF00171 Aldehyde dehydrogenase family LGL88_09955 PF04958 Arginine N-succinyltransferase beta subunit LGL88_09960 PF00202 Aminotransferase class-III LGL88_09965 PF00155 Aminotransferase class I and II LGL88_09965 PF00392 Bacterial regulatory proteins, gntR family LGL88_09970 PF01654 Cytochrome bd terminal oxidase subunit I LGL88_09975 PF02322 Cytochrome bd terminal oxidase subunit II LGL88_09985 PF00672 HAMP domain LGL88_09985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_09985 PF07730 Histidine kinase LGL88_09985 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LGL88_09990 PF08021 Siderophore-interacting FAD-binding domain LGL88_09990 PF04954 Siderophore-interacting protein LGL88_09995 PF01699 Sodium/calcium exchanger protein LGL88_10000 PF02562 PhoH-like protein LGL88_10005 PF02311 AraC-like ligand binding domain LGL88_10005 PF12833 Helix-turn-helix domain LGL88_10025 PF02321 Outer membrane efflux protein LGL88_10030 PF00529 HlyD membrane-fusion protein of T1SS LGL88_10035 PF00005 ABC transporter LGL88_10035 PF00664 ABC transporter transmembrane region LGL88_10040 PF02974 Protease inhibitor Inh LGL88_10045 PF00413 Matrixin LGL88_10045 PF08548 Peptidase M10 serralysin C terminal LGL88_10045 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LGL88_10050 PF00939 Sodium:sulfate symporter transmembrane region LGL88_10055 PF00989 PAS fold LGL88_10055 PF17203 Single cache domain 3 LGL88_10055 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LGL88_10055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_10060 PF00072 Response regulator receiver domain LGL88_10065 PF03390 2-hydroxycarboxylate transporter family LGL88_10070 PF02203 Tar ligand binding domain homologue LGL88_10070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LGL88_10070 PF00672 HAMP domain LGL88_10075 PF01432 Peptidase family M3 LGL88_10085 PF00232 Glycosyl hydrolase family 1 LGL88_10090 PF00765 Autoinducer synthase LGL88_10095 PF03472 Autoinducer binding domain LGL88_10095 PF00196 Bacterial regulatory proteins, luxR family LGL88_10100 PF00180 Isocitrate/isopropylmalate dehydrogenase LGL88_10105 PF00849 RNA pseudouridylate synthase LGL88_10110 PF00293 NUDIX domain LGL88_10120 PF04356 Protein of unknown function (DUF489) LGL88_10125 PF08328 Adenylosuccinate lyase C-terminal LGL88_10125 PF00206 Lyase LGL88_10135 PF00072 Response regulator receiver domain LGL88_10135 PF00486 Transcriptional regulatory protein, C terminal LGL88_10140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_10140 PF08918 PhoQ Sensor LGL88_10145 PF08007 Cupin superfamily protein LGL88_10150 PF01546 Peptidase family M20/M25/M40 LGL88_10150 PF07687 Peptidase dimerisation domain LGL88_10155 PF02146 Sir2 family LGL88_10160 PF00480 ROK family LGL88_10165 PF02687 FtsX-like permease family LGL88_10165 PF12704 MacB-like periplasmic core domain LGL88_10170 PF00005 ABC transporter LGL88_10175 PF12704 MacB-like periplasmic core domain LGL88_10175 PF02687 FtsX-like permease family LGL88_10180 PF00270 DEAD/DEAH box helicase LGL88_10180 PF00271 Helicase conserved C-terminal domain LGL88_10180 PF03461 TRCF domain LGL88_10180 PF17757 UvrB interaction domain LGL88_10180 PF02559 CarD-like/TRCF domain LGL88_10185 PF05433 Glycine zipper 2TM domain LGL88_10190 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_10195 PF05728 Uncharacterised protein family (UPF0227) LGL88_10200 PF00933 Glycosyl hydrolase family 3 N terminal domain LGL88_10205 PF01636 Phosphotransferase enzyme family LGL88_10210 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LGL88_10210 PF13036 Peptidoglycan-synthase activator LpoB LGL88_10215 PF07233 Protein of unknown function (DUF1425) LGL88_10220 PF01230 HIT domain LGL88_10225 PF00367 phosphotransferase system, EIIB LGL88_10225 PF02378 Phosphotransferase system, EIIC LGL88_10230 PF01026 TatD related DNase LGL88_10235 PF09115 DNA polymerase III, delta subunit, C terminal LGL88_10240 PF02223 Thymidylate kinase LGL88_10245 PF02618 YceG-like family LGL88_10250 PF01063 Amino-transferase class IV LGL88_10255 PF00109 Beta-ketoacyl synthase, N-terminal domain LGL88_10255 PF02801 Beta-ketoacyl synthase, C-terminal domain LGL88_10260 PF00550 Phosphopantetheine attachment site LGL88_10270 PF00698 Acyl transferase domain LGL88_10275 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LGL88_10275 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LGL88_10280 PF02504 Fatty acid synthesis protein LGL88_10285 PF01783 Ribosomal L32p protein family LGL88_10290 PF02620 Large ribosomal RNA subunit accumulation protein YceD LGL88_10295 PF02545 Maf-like protein LGL88_10300 PF00849 RNA pseudouridylate synthase LGL88_10300 PF01479 S4 domain LGL88_10305 PF12111 Polyribonucleotide phosphorylase C terminal LGL88_10305 PF10150 Ribonuclease E/G family LGL88_10305 PF00575 S1 RNA binding domain LGL88_10315 PF03992 Antibiotic biosynthesis monooxygenase LGL88_10320 PF01979 Amidohydrolase family LGL88_10325 PF06183 DinI-like family LGL88_10330 PF13991 BssS protein family LGL88_10335 PF01266 FAD dependent oxidoreductase LGL88_10340 PF00196 Bacterial regulatory proteins, luxR family LGL88_10345 PF01594 AI-2E family transporter LGL88_10350 PF17773 UPF0176 acylphosphatase like domain LGL88_10350 PF12368 Rhodanase C-terminal LGL88_10350 PF00581 Rhodanese-like domain LGL88_10355 PF03279 Bacterial lipid A biosynthesis acyltransferase LGL88_10365 PF00854 POT family LGL88_10370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LGL88_10375 PF00535 Glycosyl transferase family 2 LGL88_10380 PF04349 Periplasmic glucan biosynthesis protein, MdoG LGL88_10385 PF01757 Acyltransferase family LGL88_10395 PF00999 Sodium/hydrogen exchanger family LGL88_10395 PF03471 Transporter associated domain LGL88_10395 PF02080 TrkA-C domain LGL88_10400 PF00484 Carbonic anhydrase LGL88_10410 PF04358 DsrC like protein LGL88_10415 PF00708 Acylphosphatase LGL88_10420 PF10672 S-adenosylmethionine-dependent methyltransferase LGL88_10420 PF17785 PUA-like domain LGL88_10425 PF08755 Hemimethylated DNA-binding protein YccV like LGL88_10430 PF13380 CoA binding domain LGL88_10435 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LGL88_10440 PF02142 MGS-like domain LGL88_10445 PF12462 DNA helicase IV / RNA helicase N terminal LGL88_10445 PF00580 UvrD/REP helicase N-terminal domain LGL88_10445 PF13361 UvrD-like helicase C-terminal domain LGL88_10450 PF03733 Inner membrane component domain LGL88_10455 PF12805 FUSC-like inner membrane protein yccS LGL88_10460 PF04994 TfoX C-terminal domain LGL88_10460 PF04993 TfoX N-terminal domain LGL88_10465 PF03846 Cell division inhibitor SulA LGL88_10470 PF01389 OmpA-like transmembrane domain LGL88_10470 PF00691 OmpA family LGL88_10475 PF17414 MatP C-terminal ribbon-helix-helix domain LGL88_10475 PF06303 MatP N-terminal domain LGL88_10480 PF05362 Lon protease (S16) C-terminal proteolytic domain LGL88_10480 PF13654 AAA domain LGL88_10485 PF07977 FabA-like domain LGL88_10490 PF04957 Ribosome modulation factor LGL88_10495 PF03886 ABC-type transport auxiliary lipoprotein component LGL88_10500 PF02470 MlaD protein LGL88_10505 PF04403 Paraquat-inducible protein A LGL88_10510 PF16326 ABC transporter C-terminal domain LGL88_10510 PF12848 ABC transporter LGL88_10510 PF00005 ABC transporter LGL88_10515 PF10672 S-adenosylmethionine-dependent methyltransferase LGL88_10515 PF02926 THUMP domain LGL88_10515 PF01170 Putative RNA methylase family UPF0020 LGL88_10520 PF03473 MOSC domain LGL88_10520 PF00111 2Fe-2S iron-sulfur cluster binding domain LGL88_10520 PF03476 MOSC N-terminal beta barrel domain LGL88_10525 PF07126 Cell-division protein ZapC LGL88_10530 PF01180 Dihydroorotate dehydrogenase LGL88_10535 PF11940 Domain of unknown function (DUF3458) Ig-like fold LGL88_10535 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LGL88_10535 PF01433 Peptidase family M1 domain LGL88_10540 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LGL88_10540 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LGL88_10545 PF01336 OB-fold nucleic acid binding domain LGL88_10545 PF00152 tRNA synthetases class II (D, K and N) LGL88_10550 PF00267 Gram-negative porin LGL88_10555 PF00155 Aminotransferase class I and II LGL88_10560 PF00753 Metallo-beta-lactamase superfamily LGL88_10565 PF05951 Bacterial protein of unknown function (DUF882) LGL88_10570 PF01471 Putative peptidoglycan binding domain LGL88_10570 PF03734 L,D-transpeptidase catalytic domain LGL88_10575 PF04310 MukB N-terminal LGL88_10575 PF16330 MukB hinge domain LGL88_10580 PF04288 MukE-like family LGL88_10585 PF17193 MukF C-terminal domain LGL88_10585 PF17192 MukF middle domain LGL88_10585 PF03882 MukF winged-helix domain LGL88_10590 PF13847 Methyltransferase domain LGL88_10595 PF02698 DUF218 domain LGL88_10600 PF01636 Phosphotransferase enzyme family LGL88_10605 PF02348 Cytidylyltransferase LGL88_10610 PF03966 Trm112p-like protein LGL88_10615 PF00313 'Cold-shock' DNA-binding domain LGL88_10620 PF00313 'Cold-shock' DNA-binding domain LGL88_10625 PF07063 Domain of unknown function (DUF1338) LGL88_10630 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LGL88_10635 PF00664 ABC transporter transmembrane region LGL88_10635 PF00005 ABC transporter LGL88_10640 PF03772 Competence protein LGL88_10640 PF00753 Metallo-beta-lactamase superfamily LGL88_10645 PF00216 Bacterial DNA-binding protein LGL88_10650 PF00575 S1 RNA binding domain LGL88_10655 PF02224 Cytidylate kinase LGL88_10660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LGL88_10665 PF00266 Aminotransferase class-V LGL88_10670 PF00710 Asparaginase, N-terminal LGL88_10670 PF17763 Glutaminase/Asparaginase C-terminal domain LGL88_10675 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LGL88_10675 PF18381 YcaO cyclodehydratase C-terminal domain LGL88_10680 PF01226 Formate/nitrite transporter LGL88_10685 PF01228 Glycine radical LGL88_10685 PF02901 Pyruvate formate lyase-like LGL88_10690 PF04055 Radical SAM superfamily LGL88_10695 PF07690 Major Facilitator Superfamily LGL88_10700 PF02403 Seryl-tRNA synthetase N-terminal domain LGL88_10700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LGL88_10705 PF16193 AAA C-terminal domain LGL88_10705 PF12002 MgsA AAA+ ATPase C terminal LGL88_10705 PF00004 ATPase family associated with various cellular activities (AAA) LGL88_10710 PF03548 Outer membrane lipoprotein carrier protein LolA LGL88_10715 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LGL88_10715 PF01580 FtsK/SpoIIIE family LGL88_10715 PF17854 FtsK alpha domain LGL88_10715 PF09397 Ftsk gamma domain LGL88_10720 PF01037 Lrp/AsnC ligand binding domain LGL88_10725 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_10730 PF00664 ABC transporter transmembrane region LGL88_10730 PF00005 ABC transporter LGL88_10735 PF00664 ABC transporter transmembrane region LGL88_10735 PF00005 ABC transporter LGL88_10740 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LGL88_10745 PF01176 Translation initiation factor 1A / IF-1 LGL88_10750 PF00004 ATPase family associated with various cellular activities (AAA) LGL88_10750 PF07724 AAA domain (Cdc48 subfamily) LGL88_10750 PF17871 AAA lid domain LGL88_10750 PF02861 Clp amino terminal domain, pathogenicity island component LGL88_10750 PF10431 C-terminal, D2-small domain, of ClpB protein LGL88_10755 PF02617 ATP-dependent Clp protease adaptor protein ClpS LGL88_10760 PF00313 'Cold-shock' DNA-binding domain LGL88_10765 PF12704 MacB-like periplasmic core domain LGL88_10765 PF02687 FtsX-like permease family LGL88_10765 PF00005 ABC transporter LGL88_10770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LGL88_10775 PF04393 Protein of unknown function (DUF535) LGL88_10780 PF11398 Protein of unknown function (DUF2813) LGL88_10785 PF03956 Lysine exporter LysO LGL88_10790 PF03063 Prismane/CO dehydrogenase family LGL88_10795 PF00970 Oxidoreductase FAD-binding domain LGL88_10795 PF00111 2Fe-2S iron-sulfur cluster binding domain LGL88_10795 PF00175 Oxidoreductase NAD-binding domain LGL88_10800 PF01212 Beta-eliminating lyase LGL88_10805 PF11066 Protein of unknown function (DUF2867) LGL88_10805 PF13460 NAD(P)H-binding LGL88_10810 PF01370 NAD dependent epimerase/dehydratase family LGL88_10815 PF01906 Putative heavy-metal-binding LGL88_10820 PF12883 Protein of unknown function (DUF3828) LGL88_10825 PF00005 ABC transporter LGL88_10830 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_10835 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_10840 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_10845 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_10850 PF05958 tRNA (Uracil-5-)-methyltransferase LGL88_10855 PF10767 Protein of unknown function (DUF2593) LGL88_10860 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_10865 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_10870 PF08402 TOBE domain LGL88_10870 PF00005 ABC transporter LGL88_10875 PF13416 Bacterial extracellular solute-binding protein LGL88_10880 PF10722 Putative bacterial sensory transduction regulator LGL88_10885 PF07214 Protein of unknown function (DUF1418) LGL88_10890 PF00462 Glutaredoxin LGL88_10895 PF06826 Predicted Permease Membrane Region LGL88_10895 PF02080 TrkA-C domain LGL88_10905 PF01569 PAP2 superfamily LGL88_10910 PF01791 DeoC/LacD family aldolase LGL88_10915 PF00455 DeoR C terminal sensor domain LGL88_10915 PF08220 DeoR-like helix-turn-helix domain LGL88_10925 PF03315 Serine dehydratase beta chain LGL88_10925 PF03313 Serine dehydratase alpha chain LGL88_10930 PF07943 Penicillin-binding protein 5, C-terminal domain LGL88_10930 PF00768 D-alanyl-D-alanine carboxypeptidase LGL88_10935 PF00571 CBS domain LGL88_10935 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_10940 PF01053 Cys/Met metabolism PLP-dependent enzyme LGL88_10955 PF00043 Glutathione S-transferase, C-terminal domain LGL88_10955 PF13417 Glutathione S-transferase, N-terminal domain LGL88_10960 PF01370 NAD dependent epimerase/dehydratase family LGL88_10970 PF08029 HisG, C-terminal domain LGL88_10970 PF01634 ATP phosphoribosyltransferase LGL88_10975 PF00815 Histidinol dehydrogenase LGL88_10980 PF00155 Aminotransferase class I and II LGL88_10985 PF00475 Imidazoleglycerol-phosphate dehydratase LGL88_10990 PF00117 Glutamine amidotransferase class-I LGL88_10995 PF00977 Histidine biosynthesis protein LGL88_11000 PF00977 Histidine biosynthesis protein LGL88_11005 PF01502 Phosphoribosyl-AMP cyclohydrolase LGL88_11005 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LGL88_11015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LGL88_11015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LGL88_11020 PF00483 Nucleotidyl transferase LGL88_11025 PF00483 Nucleotidyl transferase LGL88_11030 PF00571 CBS domain LGL88_11030 PF03471 Transporter associated domain LGL88_11030 PF03741 Integral membrane protein TerC family LGL88_11035 PF03606 C4-dicarboxylate anaerobic carrier LGL88_11040 PF05170 AsmA family LGL88_11045 PF00692 dUTPase LGL88_11050 PF00485 Phosphoribulokinase / Uridine kinase family LGL88_11055 PF10609 NUBPL iron-transfer P-loop NTPase LGL88_11060 PF09334 tRNA synthetases class I (M) LGL88_11060 PF01588 Putative tRNA binding domain LGL88_11070 PF03788 LrgA family LGL88_11075 PF04172 LrgB-like family LGL88_11080 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LGL88_11080 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LGL88_11085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_11085 PF03466 LysR substrate binding domain LGL88_11095 PF00390 Malic enzyme, N-terminal domain LGL88_11095 PF03949 Malic enzyme, NAD binding domain LGL88_11100 PF02698 DUF218 domain LGL88_11105 PF02653 Branched-chain amino acid transport system / permease component LGL88_11110 PF00005 ABC transporter LGL88_11115 PF13407 Periplasmic binding protein domain LGL88_11120 PF00356 Bacterial regulatory proteins, lacI family LGL88_11125 PF04235 Protein of unknown function (DUF418) LGL88_11130 PF01227 GTP cyclohydrolase I LGL88_11135 PF06779 Uncharacterised MFS-type transporter YbfB LGL88_11140 PF03466 LysR substrate binding domain LGL88_11140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_11145 PF08240 Alcohol dehydrogenase GroES-like domain LGL88_11145 PF00107 Zinc-binding dehydrogenase LGL88_11150 PF00756 Putative esterase LGL88_11160 PF00994 Probable molybdopterin binding domain LGL88_11160 PF03454 MoeA C-terminal region (domain IV) LGL88_11160 PF03453 MoeA N-terminal region (domain I and II) LGL88_11165 PF00899 ThiF family LGL88_11170 PF00005 ABC transporter LGL88_11170 PF12848 ABC transporter LGL88_11175 PF01545 Cation efflux family LGL88_11175 PF16916 Dimerisation domain of Zinc Transporter LGL88_11180 PF03448 MgtE intracellular N domain LGL88_11180 PF01769 Divalent cation transporter LGL88_11180 PF00571 CBS domain LGL88_11185 PF13505 Outer membrane protein beta-barrel domain LGL88_11190 PF00892 EamA-like transporter family LGL88_11195 PF13649 Methyltransferase domain LGL88_11200 PF00210 Ferritin-like domain LGL88_11205 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_11210 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_11215 PF00005 ABC transporter LGL88_11220 PF05971 RNA methyltransferase LGL88_11225 PF02885 Glycosyl transferase family, helical bundle domain LGL88_11230 PF13307 Helicase C-terminal domain LGL88_11230 PF06733 DEAD_2 LGL88_11235 PF00267 Gram-negative porin LGL88_11240 PF00892 EamA-like transporter family LGL88_11250 PF01276 Orn/Lys/Arg decarboxylase, major domain LGL88_11250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LGL88_11250 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LGL88_11255 PF13520 Amino acid permease LGL88_11260 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_11265 PF00005 ABC transporter LGL88_11270 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_11275 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LGL88_11280 PF00581 Rhodanese-like domain LGL88_11285 PF07308 Protein of unknown function (DUF1456) LGL88_11290 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_11295 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_11305 PF00005 ABC transporter LGL88_11310 PF04226 Transglycosylase associated protein LGL88_11320 PF01844 HNH endonuclease LGL88_11325 PF01928 CYTH domain LGL88_11330 PF09330 D-lactate dehydrogenase, membrane binding LGL88_11330 PF01565 FAD binding domain LGL88_11335 PF00768 D-alanyl-D-alanine carboxypeptidase LGL88_11345 PF01207 Dihydrouridine synthase (Dus) LGL88_11350 PF00270 DEAD/DEAH box helicase LGL88_11350 PF00271 Helicase conserved C-terminal domain LGL88_11355 PF09209 Tetracyclin repressor-like, C-terminal domain LGL88_11355 PF00440 Bacterial regulatory proteins, tetR family LGL88_11360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LGL88_11365 PF00005 ABC transporter LGL88_11380 PF01027 Inhibitor of apoptosis-promoting Bax1 LGL88_11385 PF02391 MoaE protein LGL88_11390 PF02597 ThiS family LGL88_11395 PF01967 MoaC family LGL88_11400 PF06463 Molybdenum Cofactor Synthesis C LGL88_11400 PF04055 Radical SAM superfamily LGL88_11405 PF01933 Uncharacterised protein family UPF0052 LGL88_11410 PF00005 ABC transporter LGL88_11415 PF01032 FecCD transport family LGL88_11430 PF09905 DNA-binding protein VF530 LGL88_11435 PF17757 UvrB interaction domain LGL88_11435 PF12344 Ultra-violet resistance protein B LGL88_11435 PF00271 Helicase conserved C-terminal domain LGL88_11435 PF04851 Type III restriction enzyme, res subunit LGL88_11435 PF02151 UvrB/uvrC motif LGL88_11440 PF00005 ABC transporter LGL88_11450 PF08241 Methyltransferase domain LGL88_11455 PF00155 Aminotransferase class I and II LGL88_11460 PF04055 Radical SAM superfamily LGL88_11460 PF06968 Biotin and Thiamin Synthesis associated domain LGL88_11465 PF00202 Aminotransferase class-III LGL88_11470 PF10282 Lactonase, 7-bladed beta-propeller LGL88_11480 PF00005 ABC transporter LGL88_11480 PF03459 TOBE domain LGL88_11485 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_11495 PF10766 Multidrug efflux pump-associated protein AcrZ LGL88_11500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_11500 PF03459 TOBE domain LGL88_11515 PF16363 GDP-mannose 4,6 dehydratase LGL88_11520 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LGL88_11520 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LGL88_11525 PF08544 GHMP kinases C terminal LGL88_11525 PF00288 GHMP kinases N terminal domain LGL88_11525 PF10509 Galactokinase galactose-binding signature LGL88_11530 PF01263 Aldose 1-epimerase LGL88_11540 PF00300 Histidine phosphatase superfamily (branch 1) LGL88_11545 PF00793 DAHP synthetase I family LGL88_11550 PF00196 Bacterial regulatory proteins, luxR family LGL88_11550 PF00072 Response regulator receiver domain LGL88_11555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_11555 PF01627 Hpt domain LGL88_11555 PF00989 PAS fold LGL88_11555 PF00072 Response regulator receiver domain LGL88_11555 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_11555 PF00512 His Kinase A (phospho-acceptor) domain LGL88_11560 PF04973 Nicotinamide mononucleotide transporter LGL88_11565 PF02445 Quinolinate synthetase A protein LGL88_11595 PF16331 TolA binding protein trimerisation LGL88_11595 PF13174 Tetratricopeptide repeat LGL88_11600 PF00691 OmpA family LGL88_11605 PF07676 WD40-like Beta Propeller Repeat LGL88_11605 PF04052 TolB amino-terminal domain LGL88_11610 PF06519 TolA C-terminal LGL88_11610 PF06519 TolA C-terminal LGL88_11615 PF02472 Biopolymer transport protein ExbD/TolR LGL88_11620 PF01618 MotA/TolQ/ExbB proton channel family LGL88_11625 PF03061 Thioesterase superfamily LGL88_11630 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LGL88_11635 PF08173 Membrane bound YbgT-like protein LGL88_11640 PF02322 Cytochrome bd terminal oxidase subunit II LGL88_11645 PF01654 Cytochrome bd terminal oxidase subunit I LGL88_11650 PF02872 5'-nucleotidase, C-terminal domain LGL88_11650 PF00149 Calcineurin-like phosphoesterase LGL88_11655 PF02629 CoA binding domain LGL88_11655 PF00549 CoA-ligase LGL88_11660 PF08442 ATP-grasp domain LGL88_11660 PF00549 CoA-ligase LGL88_11665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LGL88_11665 PF00364 Biotin-requiring enzyme LGL88_11665 PF02817 e3 binding domain LGL88_11670 PF16870 2-oxoglutarate dehydrogenase C-terminal LGL88_11670 PF02779 Transketolase, pyrimidine binding domain LGL88_11670 PF16078 2-oxoglutarate dehydrogenase N-terminus LGL88_11670 PF00676 Dehydrogenase E1 component LGL88_11675 PF13085 2Fe-2S iron-sulfur cluster binding domain LGL88_11680 PF02910 Fumarate reductase flavoprotein C-term LGL88_11680 PF00890 FAD binding domain LGL88_11685 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LGL88_11690 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LGL88_11695 PF00285 Citrate synthase, C-terminal domain LGL88_11705 PF01470 Pyroglutamyl peptidase LGL88_11720 PF03746 LamB/YcsF family LGL88_11725 PF02626 Carboxyltransferase domain, subdomain A and B LGL88_11730 PF02682 Carboxyltransferase domain, subdomain C and D LGL88_11735 PF01784 NIF3 (NGG1p interacting factor 3) LGL88_11740 PF02112 cAMP phosphodiesterases class-II LGL88_11745 PF00875 DNA photolyase LGL88_11745 PF03441 FAD binding domain of DNA photolyase LGL88_11750 PF08349 Protein of unknown function (DUF1722) LGL88_11755 PF10725 Protein of unknown function (DUF2517) LGL88_11760 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) LGL88_11765 PF03814 Potassium-transporting ATPase A subunit LGL88_11775 PF02669 K+-transporting ATPase, c chain LGL88_11780 PF13493 Domain of unknown function (DUF4118) LGL88_11780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_11780 PF00512 His Kinase A (phospho-acceptor) domain LGL88_11780 PF02702 Osmosensitive K+ channel His kinase sensor domain LGL88_11780 PF13492 GAF domain LGL88_11785 PF00072 Response regulator receiver domain LGL88_11785 PF00486 Transcriptional regulatory protein, C terminal LGL88_11795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LGL88_11795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LGL88_11795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LGL88_11795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LGL88_11800 PF17206 SeqA protein N-terminal domain LGL88_11800 PF03925 SeqA protein C-terminal domain LGL88_11805 PF12697 Alpha/beta hydrolase family LGL88_11810 PF01402 Ribbon-helix-helix protein, copG family LGL88_11815 PF02203 Tar ligand binding domain homologue LGL88_11815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LGL88_11815 PF00672 HAMP domain LGL88_11820 PF00258 Flavodoxin LGL88_11825 PF01475 Ferric uptake regulator family LGL88_11830 PF03173 Putative carbohydrate binding domain LGL88_11830 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LGL88_11830 PF00728 Glycosyl hydrolase family 20, catalytic domain LGL88_11830 PF02838 Glycosyl hydrolase family 20, domain 2 LGL88_11835 PF13982 YbfN-like lipoprotein LGL88_11840 PF03573 outer membrane porin, OprD family LGL88_11845 PF00749 tRNA synthetases class I (E and Q), catalytic domain LGL88_11845 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LGL88_11850 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LGL88_11850 PF00367 phosphotransferase system, EIIB LGL88_11850 PF02378 Phosphotransferase system, EIIC LGL88_11855 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LGL88_11860 PF01979 Amidohydrolase family LGL88_11865 PF00480 ROK family LGL88_11865 PF01047 MarR family LGL88_11870 PF13344 Haloacid dehalogenase-like hydrolase LGL88_11875 PF00733 Asparagine synthase LGL88_11875 PF13537 Glutamine amidotransferase domain LGL88_11910 PF01494 FAD binding domain LGL88_11915 PF04055 Radical SAM superfamily LGL88_11915 PF01938 TRAM domain LGL88_11915 PF00919 Uncharacterized protein family UPF0004 LGL88_11920 PF02562 PhoH-like protein LGL88_11925 PF02130 Uncharacterized protein family UPF0054 LGL88_11930 PF03471 Transporter associated domain LGL88_11930 PF00571 CBS domain LGL88_11935 PF00795 Carbon-nitrogen hydrolase LGL88_11940 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_11945 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_11950 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_11955 PF00005 ABC transporter LGL88_11960 PF07295 Zinc-ribbon containing domain LGL88_11965 PF00133 tRNA synthetases class I (I, L, M and V) LGL88_11965 PF13603 Leucyl-tRNA synthetase, Domain 2 LGL88_11965 PF08264 Anticodon-binding domain of tRNA LGL88_11970 PF04390 Lipopolysaccharide-assembly LGL88_11975 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LGL88_11975 PF06144 DNA polymerase III, delta subunit LGL88_11980 PF01467 Cytidylyltransferase-like LGL88_11990 PF03335 Phage tail fibre repeat LGL88_11990 PF08400 Prophage tail fibre N-terminal LGL88_11990 PF07484 Phage Tail Collar Domain LGL88_12130 PF03245 Bacteriophage Rz lysis protein LGL88_12135 PF00959 Phage lysozyme LGL88_12160 PF05772 NinB protein LGL88_12180 PF06992 Replication protein P LGL88_12240 PF00436 Single-strand binding protein family LGL88_12305 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LGL88_12305 PF00589 Phage integrase family LGL88_12315 PF02590 Predicted SPOUT methyltransferase LGL88_12320 PF03717 Penicillin-binding Protein dimerisation domain LGL88_12320 PF00905 Penicillin binding protein transpeptidase domain LGL88_12325 PF01098 Cell cycle protein LGL88_12330 PF05036 Sporulation related domain LGL88_12330 PF03330 Lytic transglycolase LGL88_12335 PF07943 Penicillin-binding protein 5, C-terminal domain LGL88_12335 PF00768 D-alanyl-D-alanine carboxypeptidase LGL88_12340 PF04359 Protein of unknown function (DUF493) LGL88_12345 PF03099 Biotin/lipoate A/B protein ligase family LGL88_12350 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LGL88_12350 PF04055 Radical SAM superfamily LGL88_12355 PF02416 mttA/Hcf106 family LGL88_12360 PF00990 Diguanylate cyclase, GGDEF domain LGL88_12360 PF05230 MASE2 domain LGL88_12370 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LGL88_12375 PF00313 'Cold-shock' DNA-binding domain LGL88_12380 PF00313 'Cold-shock' DNA-binding domain LGL88_12385 PF00196 Bacterial regulatory proteins, luxR family LGL88_12415 PF00440 Bacterial regulatory proteins, tetR family LGL88_12420 PF00990 Diguanylate cyclase, GGDEF domain LGL88_12420 PF00072 Response regulator receiver domain LGL88_12425 PF00672 HAMP domain LGL88_12425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_12425 PF00512 His Kinase A (phospho-acceptor) domain LGL88_12425 PF01627 Hpt domain LGL88_12425 PF00072 Response regulator receiver domain LGL88_12425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LGL88_12430 PF16355 Domain of unknown function (DUF4982) LGL88_12430 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LGL88_12430 PF02837 Glycosyl hydrolases family 2, sugar binding domain LGL88_12430 PF00703 Glycosyl hydrolases family 2 LGL88_12450 PF07238 PilZ domain LGL88_12450 PF00535 Glycosyl transferase family 2 LGL88_12450 PF03552 Cellulose synthase LGL88_12460 PF00483 Nucleotidyl transferase LGL88_12470 PF00072 Response regulator receiver domain LGL88_12470 PF00486 Transcriptional regulatory protein, C terminal LGL88_12480 PF00343 Carbohydrate phosphorylase LGL88_12490 PF01292 Prokaryotic cytochrome b561 LGL88_12515 PF00501 AMP-binding enzyme LGL88_12525 PF03960 ArsC family LGL88_12530 PF02040 Arsenical pump membrane protein LGL88_12535 PF01022 Bacterial regulatory protein, arsR family LGL88_12545 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LGL88_12545 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LGL88_12580 PF02753 Pili assembly chaperone PapD, C-terminal domain LGL88_12580 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LGL88_12585 PF13953 PapC C-terminal domain LGL88_12585 PF13954 PapC N-terminal domain LGL88_12585 PF00577 Outer membrane usher protein LGL88_12590 PF00419 Fimbrial protein LGL88_12605 PF09190 DALR domain LGL88_12605 PF01406 tRNA synthetases class I (C) catalytic domain LGL88_12610 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LGL88_12615 PF00149 Calcineurin-like phosphoesterase LGL88_12620 PF00731 AIR carboxylase LGL88_12625 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LGL88_12625 PF02222 ATP-grasp domain LGL88_12635 PF00005 ABC transporter LGL88_12640 PF13472 GDSL-like Lipase/Acylhydrolase family LGL88_12645 PF00106 short chain dehydrogenase LGL88_12650 PF00085 Thioredoxin LGL88_12655 PF01145 SPFH domain / Band 7 family LGL88_12655 PF16200 C-terminal region of band_7 LGL88_12660 PF01957 NfeD-like C-terminal, partner-binding LGL88_12665 PF13411 MerR HTH family regulatory protein LGL88_12670 PF00403 Heavy-metal-associated domain LGL88_12675 PF01963 TraB family LGL88_12680 PF04073 Aminoacyl-tRNA editing domain LGL88_12690 PF08485 Polysaccharide biosynthesis protein C-terminal LGL88_12690 PF02719 Polysaccharide biosynthesis protein LGL88_12700 PF02350 UDP-N-acetylglucosamine 2-epimerase LGL88_12720 PF08242 Methyltransferase domain LGL88_12735 PF02872 5'-nucleotidase, C-terminal domain LGL88_12735 PF00149 Calcineurin-like phosphoesterase LGL88_12740 PF02254 TrkA-N domain LGL88_12740 PF00999 Sodium/hydrogen exchanger family LGL88_12745 PF00294 pfkB family carbohydrate kinase LGL88_12750 PF02706 Chain length determinant protein LGL88_12760 PF00534 Glycosyl transferases group 1 LGL88_12785 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LGL88_12790 PF16363 GDP-mannose 4,6 dehydratase LGL88_12795 PF00483 Nucleotidyl transferase LGL88_12805 PF00762 Ferrochelatase LGL88_12810 PF05191 Adenylate kinase, active site lid LGL88_12815 PF00183 Hsp90 protein LGL88_12815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_12820 PF02132 RecR protein LGL88_12820 PF13662 Toprim domain LGL88_12825 PF02575 YbaB/EbfC DNA-binding family LGL88_12830 PF12169 DNA polymerase III subunits gamma and tau domain III LGL88_12830 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LGL88_12830 PF12170 DNA polymerase III tau subunit V interacting with alpha LGL88_12835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_12835 PF00512 His Kinase A (phospho-acceptor) domain LGL88_12840 PF00072 Response regulator receiver domain LGL88_12840 PF00486 Transcriptional regulatory protein, C terminal LGL88_12855 PF01970 Tripartite tricarboxylate transporter TctA family LGL88_12860 PF00156 Phosphoribosyl transferase domain LGL88_12865 PF04304 Protein of unknown function (DUF454) LGL88_12875 PF10689 Protein of unknown function (DUF2496) LGL88_12880 PF00924 Mechanosensitive ion channel LGL88_12880 PF12794 Mechanosensitive ion channel inner membrane domain 1 LGL88_12880 PF12795 Mechanosensitive ion channel porin domain LGL88_12885 PF02635 DsrE/DsrF-like family LGL88_12890 PF00440 Bacterial regulatory proteins, tetR family LGL88_12890 PF08361 MAATS-type transcriptional repressor, C-terminal region LGL88_12895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LGL88_12895 PF00529 HlyD membrane-fusion protein of T1SS LGL88_12900 PF00873 AcrB/AcrD/AcrF family LGL88_12905 PF01197 Ribosomal protein L31 LGL88_12910 PF00444 Ribosomal protein L36 LGL88_12920 PF10757 Biofilm formation regulator YbaJ LGL88_12925 PF05321 Haemolysin expression modulating protein LGL88_12935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LGL88_12945 PF00909 Ammonium Transporter Family LGL88_12950 PF00543 Nitrogen regulatory protein P-II LGL88_12955 PF00664 ABC transporter transmembrane region LGL88_12955 PF00005 ABC transporter LGL88_12960 PF00005 ABC transporter LGL88_12960 PF00664 ABC transporter transmembrane region LGL88_12965 PF13404 AsnC-type helix-turn-helix domain LGL88_12965 PF01037 Lrp/AsnC ligand binding domain LGL88_12980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LGL88_12980 PF12793 Sugar transport-related sRNA regulator N-term LGL88_12985 PF06508 Queuosine biosynthesis protein QueC LGL88_13000 PF13145 PPIC-type PPIASE domain LGL88_13005 PF00216 Bacterial DNA-binding protein LGL88_13010 PF02190 ATP-dependent protease La (LON) substrate-binding domain LGL88_13010 PF00004 ATPase family associated with various cellular activities (AAA) LGL88_13010 PF05362 Lon protease (S16) C-terminal proteolytic domain LGL88_13015 PF06689 ClpX C4-type zinc finger LGL88_13015 PF07724 AAA domain (Cdc48 subfamily) LGL88_13015 PF10431 C-terminal, D2-small domain, of ClpB protein LGL88_13020 PF00574 Clp protease LGL88_13025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LGL88_13025 PF05698 Bacterial trigger factor protein (TF) C-terminus LGL88_13025 PF05697 Bacterial trigger factor protein (TF) LGL88_13030 PF01722 BolA-like protein LGL88_13035 PF03923 Uncharacterized lipoprotein LGL88_13035 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LGL88_13040 PF07690 Major Facilitator Superfamily LGL88_13045 PF03502 Nucleoside-specific channel-forming protein, Tsx LGL88_13050 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LGL88_13050 PF06481 COX Aromatic Rich Motif LGL88_13055 PF00115 Cytochrome C and Quinol oxidase polypeptide I LGL88_13060 PF00510 Cytochrome c oxidase subunit III LGL88_13065 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LGL88_13070 PF01040 UbiA prenyltransferase family LGL88_13075 PF07690 Major Facilitator Superfamily LGL88_13080 PF04461 Protein of unknown function (DUF520) LGL88_13085 PF02558 Ketopantoate reductase PanE/ApbA LGL88_13085 PF08546 Ketopantoate reductase PanE/ApbA C terminal LGL88_13090 PF01965 DJ-1/PfpI family LGL88_13095 PF07690 Major Facilitator Superfamily LGL88_13105 PF00672 HAMP domain LGL88_13105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_13105 PF00512 His Kinase A (phospho-acceptor) domain LGL88_13110 PF02954 Bacterial regulatory protein, Fis family LGL88_13110 PF00072 Response regulator receiver domain LGL88_13110 PF14532 Sigma-54 interaction domain LGL88_13115 PF02568 Thiamine biosynthesis protein (ThiI) LGL88_13115 PF02926 THUMP domain LGL88_13120 PF02609 Exonuclease VII small subunit LGL88_13125 PF00348 Polyprenyl synthetase LGL88_13130 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LGL88_13130 PF02779 Transketolase, pyrimidine binding domain LGL88_13130 PF02780 Transketolase, C-terminal domain LGL88_13135 PF04608 Phosphatidylglycerophosphatase A LGL88_13140 PF02769 AIR synthase related protein, C-terminal domain LGL88_13140 PF00586 AIR synthase related protein, N-terminal domain LGL88_13145 PF01029 NusB family LGL88_13150 PF00885 6,7-dimethyl-8-ribityllumazine synthase LGL88_13155 PF01872 RibD C-terminal domain LGL88_13155 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LGL88_13160 PF03477 ATP cone domain LGL88_13165 PF07549 SecD/SecF GG Motif LGL88_13165 PF02355 Protein export membrane protein LGL88_13170 PF07549 SecD/SecF GG Motif LGL88_13170 PF13721 SecD export protein N-terminal TM region LGL88_13170 PF02355 Protein export membrane protein LGL88_13175 PF02699 Preprotein translocase subunit LGL88_13180 PF01702 Queuine tRNA-ribosyltransferase LGL88_13185 PF02547 Queuosine biosynthesis protein LGL88_13190 PF04336 Acyl carrier protein phosphodiesterase LGL88_13195 PF10417 C-terminal domain of 1-Cys peroxiredoxin LGL88_13195 PF00578 AhpC/TSA family LGL88_13205 PF00128 Alpha amylase, catalytic domain LGL88_13205 PF02903 Alpha amylase, N-terminal ig-like domain LGL88_13210 PF00324 Amino acid permease LGL88_13215 PF05525 Branched-chain amino acid transport protein LGL88_13220 PF12849 PBP superfamily domain LGL88_13225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_13225 PF00512 His Kinase A (phospho-acceptor) domain LGL88_13225 PF11808 Phosphate regulon sensor protein PhoR LGL88_13225 PF00989 PAS fold LGL88_13230 PF00486 Transcriptional regulatory protein, C terminal LGL88_13230 PF00072 Response regulator receiver domain LGL88_13235 PF00149 Calcineurin-like phosphoesterase LGL88_13235 PF12320 Type 5 capsule protein repressor C-terminal domain LGL88_13240 PF13476 AAA domain LGL88_13245 PF00480 ROK family LGL88_13250 PF04381 Putative exonuclease, RdgC LGL88_13255 PF06865 Pyrimidine/purine nucleoside phosphorylase LGL88_13260 PF07302 AroM protein LGL88_13280 PF01202 Shikimate kinase LGL88_13285 PF07715 TonB-dependent Receptor Plug Domain LGL88_13285 PF00593 TonB dependent receptor LGL88_13310 PF07238 PilZ domain LGL88_13310 PF07317 Flagellar regulator YcgR LGL88_13315 PF00171 Aldehyde dehydrogenase family LGL88_13320 PF00696 Amino acid kinase family LGL88_13320 PF01472 PUA domain LGL88_13325 PF07417 Sigma factor-binding transcriptional regulator Crl LGL88_13330 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LGL88_13335 PF00156 Phosphoribosyl transferase domain LGL88_13340 PF07687 Peptidase dimerisation domain LGL88_13340 PF01546 Peptidase family M20/M25/M40 LGL88_13345 PF00817 impB/mucB/samB family LGL88_13345 PF11799 impB/mucB/samB family C-terminal domain LGL88_13345 PF11798 IMS family HHH motif LGL88_13350 PF03009 Glycerophosphoryl diester phosphodiesterase family LGL88_13355 PF04400 (Na+)-NQR maturation NqrM LGL88_13360 PF02424 ApbE family LGL88_13365 PF00970 Oxidoreductase FAD-binding domain LGL88_13365 PF00111 2Fe-2S iron-sulfur cluster binding domain LGL88_13365 PF00175 Oxidoreductase NAD-binding domain LGL88_13370 PF02508 Rnf-Nqr subunit, membrane protein LGL88_13375 PF02508 Rnf-Nqr subunit, membrane protein LGL88_13380 PF04205 FMN-binding domain LGL88_13385 PF03116 NQR2, RnfD, RnfE family LGL88_13390 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LGL88_13390 PF11973 NQRA C-terminal domain LGL88_13395 PF03734 L,D-transpeptidase catalytic domain LGL88_13400 PF13230 Glutamine amidotransferases class-II LGL88_13405 PF13580 SIS domain LGL88_13410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LGL88_13410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LGL88_13410 PF09317 Domain of unknown function (DUF1974) LGL88_13420 PF00929 Exonuclease LGL88_13425 PF00075 RNase H LGL88_13430 PF08241 Methyltransferase domain LGL88_13435 PF16123 Hydroxyacylglutathione hydrolase C-terminus LGL88_13435 PF00753 Metallo-beta-lactamase superfamily LGL88_13440 PF01464 Transglycosylase SLT domain LGL88_13440 PF01476 LysM domain LGL88_13445 PF03372 Endonuclease/Exonuclease/phosphatase family LGL88_13480 PF07724 AAA domain (Cdc48 subfamily) LGL88_13480 PF17871 AAA lid domain LGL88_13480 PF02861 Clp amino terminal domain, pathogenicity island component LGL88_13480 PF10431 C-terminal, D2-small domain, of ClpB protein LGL88_13480 PF00004 ATPase family associated with various cellular activities (AAA) LGL88_13485 PF02578 Multi-copper polyphenol oxidoreductase laccase LGL88_13490 PF00849 RNA pseudouridylate synthase LGL88_13490 PF01479 S4 domain LGL88_13495 PF13525 Outer membrane lipoprotein LGL88_13500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LGL88_13510 PF00800 Prephenate dehydratase LGL88_13510 PF01817 Chorismate mutase type II LGL88_13515 PF02153 Prephenate dehydrogenase LGL88_13515 PF01817 Chorismate mutase type II LGL88_13520 PF00793 DAHP synthetase I family LGL88_13525 PF04397 LytTr DNA-binding domain LGL88_13525 PF00072 Response regulator receiver domain LGL88_13530 PF03605 Anaerobic c4-dicarboxylate membrane transporter LGL88_13535 PF04338 Protein of unknown function, DUF481 LGL88_13540 PF01245 Ribosomal protein L19 LGL88_13545 PF01746 tRNA (Guanine-1)-methyltransferase LGL88_13550 PF05239 PRC-barrel domain LGL88_13550 PF01782 RimM N-terminal domain LGL88_13555 PF00886 Ribosomal protein S16 LGL88_13560 PF02978 Signal peptide binding domain LGL88_13560 PF02881 SRP54-type protein, helical bundle domain LGL88_13560 PF00448 SRP54-type protein, GTPase domain LGL88_13565 PF01578 Cytochrome C assembly protein LGL88_13570 PF00571 CBS domain LGL88_13570 PF03471 Transporter associated domain LGL88_13570 PF01595 Cyclin M transmembrane N-terminal domain LGL88_13575 PF02664 S-Ribosylhomocysteinase (LuxS) LGL88_13580 PF04262 Glutamate-cysteine ligase LGL88_13585 PF09335 SNARE associated Golgi protein LGL88_13590 PF13419 Haloacid dehalogenase-like hydrolase LGL88_13595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LGL88_13595 PF01411 tRNA synthetases class II (A) LGL88_13600 PF01411 tRNA synthetases class II (A) LGL88_13600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LGL88_13625 PF02599 Global regulator protein family LGL88_13630 PF01411 tRNA synthetases class II (A) LGL88_13630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LGL88_13630 PF02272 DHHA1 domain LGL88_13635 PF02631 RecX family LGL88_13640 PF00154 recA bacterial DNA recombination protein LGL88_13645 PF02464 Competence-damaged protein LGL88_13650 PF07690 Major Facilitator Superfamily LGL88_13655 PF05681 Fumarate hydratase (Fumerase) LGL88_13655 PF05683 Fumarase C-terminus LGL88_13680 PF11356 Type II secretion system protein C LGL88_13685 PF00263 Bacterial type II and III secretion system protein LGL88_13685 PF03958 Bacterial type II/III secretion system short domain LGL88_13690 PF00437 Type II/IV secretion system protein LGL88_13695 PF00482 Type II secretion system (T2SS), protein F LGL88_13700 PF08334 Type II secretion system (T2SS), protein G LGL88_13700 PF07963 Prokaryotic N-terminal methylation motif LGL88_13710 PF07963 Prokaryotic N-terminal methylation motif LGL88_13710 PF02501 Type II secretion system (T2SS), protein I LGL88_13715 PF07963 Prokaryotic N-terminal methylation motif LGL88_13715 PF11612 Type II secretion system (T2SS), protein J LGL88_13720 PF03934 Type II secretion system (T2SS), protein K LGL88_13725 PF12693 GspL periplasmic domain LGL88_13725 PF05134 Type II secretion system (T2SS), protein L LGL88_13735 PF06750 Bacterial Peptidase A24 N-terminal domain LGL88_13735 PF01478 Type IV leader peptidase family LGL88_13740 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LGL88_13745 PF18416 N-acetylglucosamine binding protein domain 2 LGL88_13745 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LGL88_13765 PF00550 Phosphopantetheine attachment site LGL88_13790 PF07720 Tetratricopeptide repeat LGL88_13795 PF01312 FlhB HrpN YscU SpaS Family LGL88_13800 PF01311 Bacterial export proteins, family 1 LGL88_13805 PF01313 Bacterial export proteins, family 3 LGL88_13810 PF00813 FliP family LGL88_13815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LGL88_13830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LGL88_13830 PF02874 ATP synthase alpha/beta family, beta-barrel domain LGL88_13830 PF18269 T3SS EscN ATPase C-terminal domain LGL88_13840 PF00771 FHIPEP family LGL88_13845 PF07201 HrpJ-like domain LGL88_13850 PF00263 Bacterial type II and III secretion system protein LGL88_13850 PF03958 Bacterial type II/III secretion system short domain LGL88_13855 PF12833 Helix-turn-helix domain LGL88_13875 PF01514 Secretory protein of YscJ/FliF family LGL88_13895 PF01464 Transglycosylase SLT domain LGL88_13910 PF00196 Bacterial regulatory proteins, luxR family LGL88_13910 PF00072 Response regulator receiver domain LGL88_13915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_13915 PF00512 His Kinase A (phospho-acceptor) domain LGL88_13915 PF09308 LuxQ, periplasmic LGL88_13915 PF00072 Response regulator receiver domain LGL88_13925 PF01624 MutS domain I LGL88_13925 PF05188 MutS domain II LGL88_13925 PF05192 MutS domain III LGL88_13925 PF05190 MutS family domain IV LGL88_13925 PF00488 MutS domain V LGL88_13930 PF04542 Sigma-70 region 2 LGL88_13930 PF04545 Sigma-70, region 4 LGL88_13930 PF04539 Sigma-70 region 3 LGL88_13930 PF00140 Sigma-70 factor, region 1.2 LGL88_13935 PF01476 LysM domain LGL88_13935 PF01551 Peptidase family M23 LGL88_13945 PF01975 Survival protein SurE LGL88_13950 PF01142 tRNA pseudouridine synthase D (TruD) LGL88_13955 PF02542 YgbB family LGL88_13960 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LGL88_13965 PF04977 Septum formation initiator LGL88_13970 PF12084 Protein of unknown function (DUF3561) LGL88_13980 PF00009 Elongation factor Tu GTP binding domain LGL88_13985 PF01507 Phosphoadenosine phosphosulfate reductase family LGL88_13990 PF10414 Sirohaem synthase dimerisation region LGL88_13990 PF14824 Sirohaem biosynthesis protein central LGL88_13990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LGL88_13995 PF04389 Peptidase family M28 LGL88_14010 PF01507 Phosphoadenosine phosphosulfate reductase family LGL88_14015 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LGL88_14015 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LGL88_14020 PF00667 FAD binding domain LGL88_14020 PF00175 Oxidoreductase NAD-binding domain LGL88_14020 PF00258 Flavodoxin LGL88_14025 PF01242 6-pyruvoyl tetrahydropterin synthase LGL88_14030 PF04055 Radical SAM superfamily LGL88_14035 PF00113 Enolase, C-terminal TIM barrel domain LGL88_14035 PF03952 Enolase, N-terminal domain LGL88_14040 PF06418 CTP synthase N-terminus LGL88_14040 PF00117 Glutamine amidotransferase class-I LGL88_14045 PF03819 MazG nucleotide pyrophosphohydrolase domain LGL88_14050 PF13291 ACT domain LGL88_14050 PF04607 Region found in RelA / SpoT proteins LGL88_14050 PF02824 TGS domain LGL88_14055 PF01938 TRAM domain LGL88_14055 PF05958 tRNA (Uracil-5-)-methyltransferase LGL88_14060 PF00072 Response regulator receiver domain LGL88_14060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LGL88_14060 PF01627 Hpt domain LGL88_14060 PF00512 His Kinase A (phospho-acceptor) domain LGL88_14060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_14060 PF00672 HAMP domain LGL88_14065 PF00595 PDZ domain LGL88_14070 PF01966 HD domain LGL88_14070 PF13286 Phosphohydrolase-associated domain LGL88_14075 PF01048 Phosphorylase superfamily LGL88_14080 PF01497 Periplasmic binding protein LGL88_14085 PF03458 UPF0126 domain LGL88_14090 PF01521 Iron-sulphur cluster biosynthesis LGL88_14095 PF00654 Voltage gated chloride channel LGL88_14100 PF00202 Aminotransferase class-III LGL88_14105 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LGL88_14105 PF00905 Penicillin binding protein transpeptidase domain LGL88_14105 PF14814 Bifunctional transglycosylase second domain LGL88_14105 PF00912 Transglycosylase LGL88_14110 PF04408 Helicase associated domain (HA2) LGL88_14110 PF00271 Helicase conserved C-terminal domain LGL88_14110 PF08482 ATP-dependent helicase C-terminal LGL88_14110 PF00270 DEAD/DEAH box helicase LGL88_14115 PF02834 LigT like Phosphoesterase LGL88_14120 PF03749 Sugar fermentation stimulation protein RE domain LGL88_14120 PF17746 SfsA N-terminal OB domain LGL88_14125 PF01258 Prokaryotic dksA/traR C4-type zinc finger LGL88_14130 PF00749 tRNA synthetases class I (E and Q), catalytic domain LGL88_14135 PF01743 Poly A polymerase head domain LGL88_14135 PF12626 Polymerase A arginine-rich C-terminus LGL88_14135 PF12627 Probable RNA and SrmB- binding site of polymerase A LGL88_14140 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LGL88_14145 PF02548 Ketopantoate hydroxymethyltransferase LGL88_14150 PF02569 Pantoate-beta-alanine ligase LGL88_14155 PF02261 Aspartate decarboxylase LGL88_14160 PF01522 Polysaccharide deacetylase LGL88_14165 PF01061 ABC-2 type transporter LGL88_14170 PF00005 ABC transporter LGL88_14175 PF00484 Carbonic anhydrase LGL88_14180 PF00156 Phosphoribosyl transferase domain LGL88_14185 PF00394 Multicopper oxidase LGL88_14185 PF07731 Multicopper oxidase LGL88_14185 PF07732 Multicopper oxidase LGL88_14185 PF10518 TAT (twin-arginine translocation) pathway signal sequence LGL88_14190 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LGL88_14195 PF17284 Spermidine synthase tetramerisation domain LGL88_14200 PF02675 S-adenosylmethionine decarboxylase LGL88_14205 PF00892 EamA-like transporter family LGL88_14210 PF06062 Uncharacterised protein family (UPF0231) LGL88_14215 PF00330 Aconitase family (aconitate hydratase) LGL88_14215 PF06434 Aconitate hydratase 2 N-terminus LGL88_14215 PF11791 Aconitate B N-terminal domain LGL88_14225 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_14225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LGL88_14230 PF00364 Biotin-requiring enzyme LGL88_14230 PF02817 e3 binding domain LGL88_14230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LGL88_14235 PF17831 Pyruvate dehydrogenase E1 component middle domain LGL88_14235 PF00456 Transketolase, thiamine diphosphate binding domain LGL88_14240 PF00392 Bacterial regulatory proteins, gntR family LGL88_14240 PF07729 FCD domain LGL88_14245 PF00324 Amino acid permease LGL88_14250 PF02369 Bacterial Ig-like domain (group 1) LGL88_14250 PF11924 Inverse autotransporter, beta-domain LGL88_14250 PF07979 Intimin C-type lectin domain LGL88_14250 PF01476 LysM domain LGL88_14250 PF02368 Bacterial Ig-like domain (group 2) LGL88_14255 PF17113 Regulatory signalling modulator protein AmpE LGL88_14260 PF01510 N-acetylmuramoyl-L-alanine amidase LGL88_14265 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LGL88_14265 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LGL88_14270 PF07963 Prokaryotic N-terminal methylation motif LGL88_14275 PF00437 Type II/IV secretion system protein LGL88_14275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LGL88_14280 PF00482 Type II secretion system (T2SS), protein F LGL88_14285 PF00478 IMP dehydrogenase / GMP reductase domain LGL88_14290 PF01121 Dephospho-CoA kinase LGL88_14295 PF07072 Cell division protein LGL88_14300 PF03884 DNA gyrase inhibitor YacG LGL88_14305 PF00293 NUDIX domain LGL88_14310 PF02810 SEC-C motif LGL88_14310 PF07517 SecA DEAD-like domain LGL88_14310 PF01043 SecA preprotein cross-linking domain LGL88_14310 PF07516 SecA Wing and Scaffold domain LGL88_14315 PF06558 Secretion monitor precursor protein (SecM) LGL88_14325 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LGL88_14330 PF00091 Tubulin/FtsZ family, GTPase domain LGL88_14330 PF12327 FtsZ family, C-terminal domain LGL88_14335 PF02491 SHS2 domain inserted in FTSA LGL88_14340 PF03799 Cell division protein FtsQ LGL88_14340 PF08478 POTRA domain, FtsQ-type LGL88_14345 PF07478 D-ala D-ala ligase C-terminus LGL88_14345 PF01820 D-ala D-ala ligase N-terminus LGL88_14350 PF01225 Mur ligase family, catalytic domain LGL88_14350 PF02875 Mur ligase family, glutamate ligase domain LGL88_14350 PF08245 Mur ligase middle domain LGL88_14355 PF04101 Glycosyltransferase family 28 C-terminal domain LGL88_14355 PF03033 Glycosyltransferase family 28 N-terminal domain LGL88_14360 PF01098 Cell cycle protein LGL88_14365 PF08245 Mur ligase middle domain LGL88_14365 PF02875 Mur ligase family, glutamate ligase domain LGL88_14370 PF00953 Glycosyl transferase family 4 LGL88_14370 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LGL88_14375 PF01225 Mur ligase family, catalytic domain LGL88_14375 PF02875 Mur ligase family, glutamate ligase domain LGL88_14375 PF08245 Mur ligase middle domain LGL88_14380 PF01225 Mur ligase family, catalytic domain LGL88_14380 PF02875 Mur ligase family, glutamate ligase domain LGL88_14380 PF08245 Mur ligase middle domain LGL88_14385 PF00905 Penicillin binding protein transpeptidase domain LGL88_14385 PF03717 Penicillin-binding Protein dimerisation domain LGL88_14390 PF04999 Cell division protein FtsL LGL88_14395 PF01795 MraW methylase family LGL88_14400 PF02381 MraZ protein, putative antitoxin-like LGL88_14405 PF06610 L-alanine exporter LGL88_14410 PF01385 Probable transposase LGL88_14410 PF07282 Putative transposase DNA-binding domain LGL88_14410 PF12323 Helix-turn-helix domain LGL88_14415 PF01797 Transposase IS200 like LGL88_14420 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LGL88_14420 PF00356 Bacterial regulatory proteins, lacI family LGL88_14425 PF10369 Small subunit of acetolactate synthase LGL88_14430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LGL88_14430 PF00205 Thiamine pyrophosphate enzyme, central domain LGL88_14430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LGL88_14435 PF00501 AMP-binding enzyme LGL88_14440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_14440 PF03466 LysR substrate binding domain LGL88_14445 PF08502 LeuA allosteric (dimerisation) domain LGL88_14445 PF00682 HMGL-like LGL88_14450 PF00180 Isocitrate/isopropylmalate dehydrogenase LGL88_14455 PF00330 Aconitase family (aconitate hydratase) LGL88_14460 PF00694 Aconitase C-terminal domain LGL88_14465 PF07690 Major Facilitator Superfamily LGL88_14475 PF12793 Sugar transport-related sRNA regulator N-term LGL88_14475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LGL88_14485 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_14490 PF00005 ABC transporter LGL88_14495 PF09335 SNARE associated Golgi protein LGL88_14500 PF03104 DNA polymerase family B, exonuclease domain LGL88_14500 PF00136 DNA polymerase family B LGL88_14505 PF00271 Helicase conserved C-terminal domain LGL88_14505 PF00176 SNF2 family N-terminal domain LGL88_14505 PF18339 RapA N-terminal Tudor like domain 1 LGL88_14505 PF18337 RapA N-terminal Tudor like domain LGL88_14505 PF12137 RNA polymerase recycling family C-terminal LGL88_14510 PF00849 RNA pseudouridylate synthase LGL88_14515 PF05099 Tellurite resistance protein TerB LGL88_14515 PF00226 DnaJ domain LGL88_14520 PF03968 OstA-like protein LGL88_14520 PF04453 LPS transport system D LGL88_14525 PF09312 SurA N-terminal domain LGL88_14525 PF00639 PPIC-type PPIASE domain LGL88_14530 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LGL88_14535 PF00398 Ribosomal RNA adenine dimethylase LGL88_14540 PF04379 ApaG domain LGL88_14545 PF00149 Calcineurin-like phosphoesterase LGL88_14555 PF00186 Dihydrofolate reductase LGL88_14560 PF12821 Threonine/Serine exporter, ThrE LGL88_14565 PF06738 Putative threonine/serine exporter LGL88_14570 PF01810 LysE type translocator LGL88_14575 PF02142 MGS-like domain LGL88_14575 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LGL88_14575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LGL88_14580 PF00117 Glutamine amidotransferase class-I LGL88_14580 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LGL88_14585 PF05173 Dihydrodipicolinate reductase, C-terminus LGL88_14585 PF01113 Dihydrodipicolinate reductase, N-terminus LGL88_14590 PF02401 LytB protein LGL88_14595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LGL88_14600 PF01252 Signal peptidase (SPase) II LGL88_14605 PF08264 Anticodon-binding domain of tRNA LGL88_14605 PF06827 Zinc finger found in FPG and IleRS LGL88_14605 PF00133 tRNA synthetases class I (I, L, M and V) LGL88_14610 PF06574 FAD synthetase LGL88_14610 PF01687 Riboflavin kinase LGL88_14615 PF01649 Ribosomal protein S20 LGL88_14620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_14620 PF03466 LysR substrate binding domain LGL88_14625 PF06965 Na+/H+ antiporter 1 LGL88_14630 PF00226 DnaJ domain LGL88_14630 PF01556 DnaJ C terminal domain LGL88_14630 PF00684 DnaJ central domain LGL88_14635 PF00012 Hsp70 protein LGL88_14640 PF01184 GPR1/FUN34/yaaH family LGL88_14650 PF07690 Major Facilitator Superfamily LGL88_14655 PF00994 Probable molybdopterin binding domain LGL88_14660 PF00923 Transaldolase/Fructose-6-phosphate aldolase LGL88_14665 PF03883 Peroxide stress protein YaaA LGL88_14670 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_14670 PF14821 Threonine synthase N terminus LGL88_14675 PF08544 GHMP kinases C terminal LGL88_14675 PF00288 GHMP kinases N terminal domain LGL88_14680 PF13840 ACT domain LGL88_14680 PF01842 ACT domain LGL88_14680 PF00742 Homoserine dehydrogenase LGL88_14680 PF03447 Homoserine dehydrogenase, NAD binding domain LGL88_14680 PF00696 Amino acid kinase family LGL88_14685 PF08254 Threonine leader peptide LGL88_14695 PF00486 Transcriptional regulatory protein, C terminal LGL88_14695 PF00072 Response regulator receiver domain LGL88_14700 PF05981 CreA protein LGL88_14705 PF12833 Helix-turn-helix domain LGL88_14705 PF06445 GyrI-like small molecule binding domain LGL88_14710 PF00300 Histidine phosphatase superfamily (branch 1) LGL88_14715 PF01931 Protein of unknown function DUF84 LGL88_14720 PF01371 Trp repressor protein LGL88_14725 PF01464 Transglycosylase SLT domain LGL88_14725 PF14718 Soluble lytic murein transglycosylase L domain LGL88_14730 PF00689 Cation transporting ATPase, C-terminus LGL88_14730 PF00690 Cation transporter/ATPase, N-terminus LGL88_14745 PF12848 ABC transporter LGL88_14745 PF00005 ABC transporter LGL88_14750 PF01381 Helix-turn-helix LGL88_14750 PF13521 AAA domain LGL88_14755 PF18073 Rubredoxin metal binding domain LGL88_14760 PF18429 Domain of unknown function (DUF5609) LGL88_14765 PF10144 Bacterial virulence factor haemolysin LGL88_14770 PF01048 Phosphorylase superfamily LGL88_14775 PF01676 Metalloenzyme superfamily LGL88_14780 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LGL88_14780 PF00591 Glycosyl transferase family, a/b domain LGL88_14780 PF02885 Glycosyl transferase family, helical bundle domain LGL88_14785 PF01791 DeoC/LacD family aldolase LGL88_14790 PF07662 Na+ dependent nucleoside transporter C-terminus LGL88_14790 PF07670 Nucleoside recognition LGL88_14790 PF01773 Na+ dependent nucleoside transporter N-terminus LGL88_14795 PF01026 TatD related DNase LGL88_14800 PF01734 Patatin-like phospholipase LGL88_14805 PF07043 Protein of unknown function (DUF1328) LGL88_14810 PF04972 BON domain LGL88_14815 PF16658 Class II release factor RF3, C-terminal domain LGL88_14815 PF03144 Elongation factor Tu domain 2 LGL88_14815 PF00009 Elongation factor Tu GTP binding domain LGL88_14820 PF00583 Acetyltransferase (GNAT) family LGL88_14825 PF03603 DNA polymerase III psi subunit LGL88_14830 PF05175 Methyltransferase small domain LGL88_14830 PF08468 Methyltransferase small domain N-terminal LGL88_14850 PF07256 Protein of unknown function (DUF1435) LGL88_14855 PF00990 Diguanylate cyclase, GGDEF domain LGL88_14860 PF02954 Bacterial regulatory protein, Fis family LGL88_14860 PF00158 Sigma-54 interaction domain LGL88_14860 PF00989 PAS fold LGL88_14865 PF00381 PTS HPr component phosphorylation site LGL88_14865 PF00391 PEP-utilising enzyme, mobile domain LGL88_14865 PF05524 PEP-utilising enzyme, N-terminal LGL88_14865 PF03610 PTS system fructose IIA component LGL88_14870 PF02734 DAK2 domain LGL88_14875 PF02733 Dak1 domain LGL88_14880 PF00465 Iron-containing alcohol dehydrogenase LGL88_14885 PF00873 AcrB/AcrD/AcrF family LGL88_14890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LGL88_14905 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LGL88_14910 PF10696 Protein of unknown function (DUF2501) LGL88_14920 PF01116 Fructose-bisphosphate aldolase class-II LGL88_14930 PF00884 Sulfatase LGL88_14935 PF04055 Radical SAM superfamily LGL88_14935 PF13186 Iron-sulfur cluster-binding domain LGL88_14940 PF07470 Glycosyl Hydrolase Family 88 LGL88_14950 PF04962 KduI/IolB family LGL88_14955 PF01979 Amidohydrolase family LGL88_14965 PF03613 PTS system mannose/fructose/sorbose family IID component LGL88_14970 PF03609 PTS system sorbose-specific iic component LGL88_14975 PF03830 PTS system sorbose subfamily IIB component LGL88_14980 PF01380 SIS domain LGL88_14985 PF08013 Tagatose 6 phosphate kinase LGL88_14990 PF08220 DeoR-like helix-turn-helix domain LGL88_14990 PF00455 DeoR C terminal sensor domain LGL88_14995 PF00884 Sulfatase LGL88_15000 PF09092 Lyase, N terminal LGL88_15000 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LGL88_15000 PF02278 Polysaccharide lyase family 8, super-sandwich domain LGL88_15000 PF09093 Lyase, catalytic LGL88_15015 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain LGL88_15015 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LGL88_15015 PF02278 Polysaccharide lyase family 8, super-sandwich domain LGL88_15020 PF06178 Oligogalacturonate-specific porin protein (KdgM) LGL88_15025 PF01344 Kelch motif LGL88_15100 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LGL88_15105 PF04221 RelB antitoxin LGL88_15115 PF03852 DNA mismatch endonuclease Vsr LGL88_15120 PF18284 DNA methylase N-terminal domain LGL88_15120 PF00145 C-5 cytosine-specific DNA methylase LGL88_15125 PF09019 EcoRII C terminal LGL88_15125 PF09217 Restriction endonuclease EcoRII, N-terminal LGL88_15145 PF00589 Phage integrase family LGL88_15145 PF13356 Arm DNA-binding domain LGL88_15155 PF03739 Lipopolysaccharide export system permease LptF/LptG LGL88_15160 PF03739 Lipopolysaccharide export system permease LptF/LptG LGL88_15165 PF00883 Cytosol aminopeptidase family, catalytic domain LGL88_15165 PF02789 Cytosol aminopeptidase family, N-terminal domain LGL88_15170 PF04364 DNA polymerase III chi subunit, HolC LGL88_15175 PF08264 Anticodon-binding domain of tRNA LGL88_15175 PF10458 Valyl tRNA synthetase tRNA binding arm LGL88_15175 PF00133 tRNA synthetases class I (I, L, M and V) LGL88_15180 PF00583 Acetyltransferase (GNAT) family LGL88_15185 PF06877 Regulator of ribonuclease activity B LGL88_15190 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LGL88_15190 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LGL88_15195 PF13597 Anaerobic ribonucleoside-triphosphate reductase LGL88_15195 PF03477 ATP cone domain LGL88_15205 PF06754 Phosphonate metabolism protein PhnG LGL88_15210 PF05845 Bacterial phosphonate metabolism protein (PhnH) LGL88_15215 PF05861 Bacterial phosphonate metabolism protein (PhnI) LGL88_15220 PF06007 Phosphonate metabolism protein PhnJ LGL88_15225 PF00005 ABC transporter LGL88_15230 PF00005 ABC transporter LGL88_15235 PF07969 Amidohydrolase family LGL88_15245 PF12706 Beta-lactamase superfamily domain LGL88_15250 PF13460 NAD(P)H-binding LGL88_15260 PF10940 Protein of unknown function (DUF2618) LGL88_15265 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LGL88_15265 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LGL88_15265 PF01276 Orn/Lys/Arg decarboxylase, major domain LGL88_15270 PF13520 Amino acid permease LGL88_15275 PF01541 GIY-YIG catalytic domain LGL88_15280 PF13508 Acetyltransferase (GNAT) domain LGL88_15285 PF02036 SCP-2 sterol transfer family LGL88_15290 PF01136 Peptidase family U32 LGL88_15295 PF01136 Peptidase family U32 LGL88_15300 PF03313 Serine dehydratase alpha chain LGL88_15310 PF00296 Luciferase-like monooxygenase LGL88_15315 PF00271 Helicase conserved C-terminal domain LGL88_15315 PF12343 Cold shock protein DEAD box A LGL88_15315 PF00270 DEAD/DEAH box helicase LGL88_15315 PF03880 DbpA RNA binding domain LGL88_15325 PF13181 Tetratricopeptide repeat LGL88_15325 PF07719 Tetratricopeptide repeat LGL88_15330 PF03725 3' exoribonuclease family, domain 2 LGL88_15330 PF01138 3' exoribonuclease family, domain 1 LGL88_15330 PF00575 S1 RNA binding domain LGL88_15330 PF00013 KH domain LGL88_15330 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LGL88_15335 PF00312 Ribosomal protein S15 LGL88_15340 PF01509 TruB family pseudouridylate synthase (N terminal domain) LGL88_15340 PF16198 tRNA pseudouridylate synthase B C-terminal domain LGL88_15340 PF09157 Pseudouridine synthase II TruB, C-terminal LGL88_15345 PF02033 Ribosome-binding factor A LGL88_15350 PF04760 Translation initiation factor IF-2, N-terminal region LGL88_15350 PF08364 Bacterial translation initiation factor IF-2 associated region LGL88_15350 PF11987 Translation-initiation factor 2 LGL88_15350 PF03144 Elongation factor Tu domain 2 LGL88_15350 PF00009 Elongation factor Tu GTP binding domain LGL88_15355 PF08529 NusA N-terminal domain LGL88_15355 PF13184 NusA-like KH domain LGL88_15355 PF00575 S1 RNA binding domain LGL88_15360 PF17384 RimP C-terminal SH3 domain LGL88_15360 PF02576 RimP N-terminal domain LGL88_15375 PF03840 Preprotein translocase SecG subunit LGL88_15380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LGL88_15380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LGL88_15380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LGL88_15380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LGL88_15385 PF00809 Pterin binding enzyme LGL88_15390 PF17862 AAA+ lid domain LGL88_15390 PF00004 ATPase family associated with various cellular activities (AAA) LGL88_15390 PF06480 FtsH Extracellular LGL88_15390 PF01434 Peptidase family M41 LGL88_15395 PF01728 FtsJ-like methyltransferase LGL88_15400 PF01985 CRS1 / YhbY (CRM) domain LGL88_15405 PF01272 Transcription elongation factor, GreA/GreB, C-term LGL88_15405 PF03449 Transcription elongation factor, N-terminal LGL88_15410 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LGL88_15415 PF00072 Response regulator receiver domain LGL88_15415 PF00486 Transcriptional regulatory protein, C terminal LGL88_15420 PF00672 HAMP domain LGL88_15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_15420 PF00512 His Kinase A (phospho-acceptor) domain LGL88_15425 PF01018 GTP1/OBG LGL88_15425 PF01926 50S ribosome-binding GTPase LGL88_15430 PF00892 EamA-like transporter family LGL88_15435 PF01016 Ribosomal L27 protein LGL88_15440 PF00829 Ribosomal prokaryotic L21 protein LGL88_15445 PF00348 Polyprenyl synthetase LGL88_15460 PF13693 Winged helix-turn-helix DNA-binding LGL88_15465 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LGL88_15465 PF00056 lactate/malate dehydrogenase, NAD binding domain LGL88_15470 PF01316 Arginine repressor, DNA binding domain LGL88_15470 PF02863 Arginine repressor, C-terminal domain LGL88_15475 PF01225 Mur ligase family, catalytic domain LGL88_15475 PF02875 Mur ligase family, glutamate ligase domain LGL88_15475 PF08245 Mur ligase middle domain LGL88_15480 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LGL88_15485 PF00719 Inorganic pyrophosphatase LGL88_15490 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LGL88_15495 PF04357 TamB, inner membrane protein subunit of TAM complex LGL88_15500 PF01103 Surface antigen LGL88_15500 PF07244 Surface antigen variable number repeat LGL88_15500 PF17243 POTRA domain TamA domain 1 LGL88_15505 PF01625 Peptide methionine sulfoxide reductase LGL88_15510 PF01595 Cyclin M transmembrane N-terminal domain LGL88_15510 PF03471 Transporter associated domain LGL88_15510 PF00571 CBS domain LGL88_15515 PF06526 Protein of unknown function (DUF1107) LGL88_15520 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LGL88_15525 PF00459 Inositol monophosphatase family LGL88_15530 PF00149 Calcineurin-like phosphoesterase LGL88_15530 PF02872 5'-nucleotidase, C-terminal domain LGL88_15535 PF04405 Domain of Unknown function (DUF542) LGL88_15535 PF01814 Hemerythrin HHE cation binding domain LGL88_15540 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LGL88_15540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LGL88_15545 PF04225 Opacity-associated protein A LysM-like domain LGL88_15545 PF08525 Opacity-associated protein A N-terminal motif LGL88_15550 PF01281 Ribosomal protein L9, N-terminal domain LGL88_15550 PF03948 Ribosomal protein L9, C-terminal domain LGL88_15555 PF01084 Ribosomal protein S18 LGL88_15560 PF00436 Single-strand binding protein family LGL88_15565 PF01250 Ribosomal protein S6 LGL88_15575 PF00326 Prolyl oligopeptidase family LGL88_15595 PF00577 Outer membrane usher protein LGL88_15595 PF13954 PapC N-terminal domain LGL88_15595 PF13953 PapC C-terminal domain LGL88_15600 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LGL88_15620 PF08032 RNA 2'-O ribose methyltransferase substrate binding LGL88_15620 PF00588 SpoU rRNA Methylase family LGL88_15625 PF17876 Cold shock domain LGL88_15625 PF08461 Ribonuclease R winged-helix domain LGL88_15625 PF00575 S1 RNA binding domain LGL88_15625 PF00773 RNB domain LGL88_15625 PF08206 Ribonuclease B OB domain LGL88_15630 PF02082 Transcriptional regulator LGL88_15635 PF00709 Adenylosuccinate synthetase LGL88_15640 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LGL88_15645 PF01145 SPFH domain / Band 7 family LGL88_15650 PF12221 Bacterial membrane protein N terminal LGL88_15650 PF01145 SPFH domain / Band 7 family LGL88_15655 PF13167 GTP-binding GTPase N-terminal LGL88_15655 PF16360 GTP-binding GTPase Middle Region LGL88_15655 PF01926 50S ribosome-binding GTPase LGL88_15660 PF17209 Hfq protein LGL88_15670 PF01119 DNA mismatch repair protein, C-terminal domain LGL88_15670 PF08676 MutL C terminal dimerisation domain LGL88_15675 PF01520 N-acetylmuramoyl-L-alanine amidase LGL88_15680 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LGL88_15685 PF03853 YjeF-related protein N-terminus LGL88_15685 PF01256 Carbohydrate kinase LGL88_15690 PF08331 Domain of unknown function (DUF1730) LGL88_15710 PF00929 Exonuclease LGL88_15715 PF03193 RsgA GTPase LGL88_15720 PF02666 Phosphatidylserine decarboxylase LGL88_15725 PF12794 Mechanosensitive ion channel inner membrane domain 1 LGL88_15725 PF12795 Mechanosensitive ion channel porin domain LGL88_15725 PF00924 Mechanosensitive ion channel LGL88_15730 PF00152 tRNA synthetases class II (D, K and N) LGL88_15735 PF02910 Fumarate reductase flavoprotein C-term LGL88_15735 PF00890 FAD binding domain LGL88_15740 PF13183 4Fe-4S dicluster domain LGL88_15740 PF13085 2Fe-2S iron-sulfur cluster binding domain LGL88_15745 PF02300 Fumarate reductase subunit C LGL88_15750 PF02313 Fumarate reductase subunit D LGL88_15755 PF08212 Lipocalin-like domain LGL88_15760 PF00893 Small Multidrug Resistance protein LGL88_15765 PF00419 Fimbrial protein LGL88_15770 PF00577 Outer membrane usher protein LGL88_15770 PF13954 PapC N-terminal domain LGL88_15770 PF13953 PapC C-terminal domain LGL88_15775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LGL88_15775 PF02753 Pili assembly chaperone PapD, C-terminal domain LGL88_15785 PF00196 Bacterial regulatory proteins, luxR family LGL88_15790 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LGL88_15790 PF18416 N-acetylglucosamine binding protein domain 2 LGL88_15795 PF09285 Elongation factor P, C-terminal LGL88_15795 PF01132 Elongation factor P (EF-P) OB domain LGL88_15795 PF08207 Elongation factor P (EF-P) KOW-like domain LGL88_15800 PF04055 Radical SAM superfamily LGL88_15805 PF13698 Domain of unknown function (DUF4156) LGL88_15810 PF00118 TCP-1/cpn60 chaperonin family LGL88_15815 PF00166 Chaperonin 10 Kd subunit LGL88_15820 PF04186 FxsA cytoplasmic membrane protein LGL88_15825 PF10415 Fumarase C C-terminus LGL88_15825 PF00206 Lyase LGL88_15830 PF03605 Anaerobic c4-dicarboxylate membrane transporter LGL88_15835 PF03091 CutA1 divalent ion tolerance protein LGL88_15840 PF02683 Cytochrome C biogenesis protein transmembrane region LGL88_15840 PF11412 Disulphide bond corrector protein DsbC LGL88_15855 PF00375 Sodium:dicarboxylate symporter family LGL88_15860 PF13193 AMP-binding enzyme C-terminal domain LGL88_15860 PF00501 AMP-binding enzyme LGL88_15860 PF16177 Acetyl-coenzyme A synthetase N-terminus LGL88_15865 PF04341 Protein of unknown function, DUF485 LGL88_15870 PF00474 Sodium:solute symporter family LGL88_15895 PF12724 Flavodoxin domain LGL88_15900 PF02386 Cation transport protein LGL88_15905 PF01205 Uncharacterized protein family UPF0029 LGL88_15905 PF09186 Domain of unknown function (DUF1949) LGL88_15910 PF00557 Metallopeptidase family M24 LGL88_15915 PF00378 Enoyl-CoA hydratase/isomerase LGL88_15915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LGL88_15915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LGL88_15920 PF02803 Thiolase, C-terminal domain LGL88_15920 PF00108 Thiolase, N-terminal domain LGL88_15925 PF00970 Oxidoreductase FAD-binding domain LGL88_15925 PF00175 Oxidoreductase NAD-binding domain LGL88_15930 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LGL88_15940 PF02357 Transcription termination factor nusG LGL88_15945 PF00490 Delta-aminolevulinic acid dehydratase LGL88_15950 PF01026 TatD related DNase LGL88_15955 PF00902 Sec-independent protein translocase protein (TatC) LGL88_15965 PF02416 mttA/Hcf106 family LGL88_15970 PF03109 ABC1 family LGL88_15975 PF02036 SCP-2 sterol transfer family LGL88_15980 PF01209 ubiE/COQ5 methyltransferase family LGL88_15985 PF02646 RmuC family LGL88_15990 PF09335 SNARE associated Golgi protein LGL88_15995 PF13722 5TM C-terminal transporter carbon starvation CstA LGL88_15995 PF02554 Carbon starvation protein CstA LGL88_16005 PF01048 Phosphorylase superfamily LGL88_16010 PF01738 Dienelactone hydrolase family LGL88_16015 PF08267 Cobalamin-independent synthase, N-terminal domain LGL88_16015 PF01717 Cobalamin-independent synthase, Catalytic domain LGL88_16020 PF03466 LysR substrate binding domain LGL88_16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_16025 PF00892 EamA-like transporter family LGL88_16035 PF03009 Glycerophosphoryl diester phosphodiesterase family LGL88_16040 PF17912 MalK OB fold domain LGL88_16040 PF00005 ABC transporter LGL88_16045 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_16050 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_16055 PF13416 Bacterial extracellular solute-binding protein LGL88_16090 PF00005 ABC transporter LGL88_16095 PF12399 Branched-chain amino acid ATP-binding cassette transporter LGL88_16095 PF00005 ABC transporter LGL88_16100 PF02653 Branched-chain amino acid transport system / permease component LGL88_16100 PF11862 Domain of unknown function (DUF3382) LGL88_16105 PF02653 Branched-chain amino acid transport system / permease component LGL88_16110 PF13458 Periplasmic binding protein LGL88_16115 PF12568 Acetyltransferase (GNAT) domain, PanZ LGL88_16120 PF02595 Glycerate kinase family LGL88_16125 PF02447 GntP family permease LGL88_16130 PF13556 PucR C-terminal helix-turn-helix domain LGL88_16130 PF17853 GGDEF-like domain LGL88_16130 PF05651 Putative sugar diacid recognition LGL88_16135 PF04545 Sigma-70, region 4 LGL88_16135 PF04542 Sigma-70 region 2 LGL88_16135 PF00140 Sigma-70 factor, region 1.2 LGL88_16140 PF18075 FtsX extracellular domain LGL88_16140 PF02687 FtsX-like permease family LGL88_16145 PF00005 ABC transporter LGL88_16150 PF00448 SRP54-type protein, GTPase domain LGL88_16150 PF00448 SRP54-type protein, GTPase domain LGL88_16150 PF02881 SRP54-type protein, helical bundle domain LGL88_16150 PF02881 SRP54-type protein, helical bundle domain LGL88_16160 PF06611 Protein of unknown function (DUF1145) LGL88_16175 PF07947 YhhN family LGL88_16180 PF00403 Heavy-metal-associated domain LGL88_16185 PF01206 Sulfurtransferase TusA LGL88_16190 PF02592 Putative vitamin uptake transporter LGL88_16195 PF08786 DcrB LGL88_16200 PF02754 Cysteine-rich domain LGL88_16200 PF13183 4Fe-4S dicluster domain LGL88_16205 PF00890 FAD binding domain LGL88_16210 PF01266 FAD dependent oxidoreductase LGL88_16210 PF04324 BFD-like [2Fe-2S] binding domain LGL88_16220 PF07690 Major Facilitator Superfamily LGL88_16225 PF03009 Glycerophosphoryl diester phosphodiesterase family LGL88_16235 PF12146 Serine aminopeptidase, S33 LGL88_16240 PF01810 LysE type translocator LGL88_16245 PF09382 RQC domain LGL88_16245 PF16124 RecQ zinc-binding LGL88_16245 PF00570 HRDC domain LGL88_16245 PF00271 Helicase conserved C-terminal domain LGL88_16245 PF00270 DEAD/DEAH box helicase LGL88_16250 PF02253 Phospholipase A1 LGL88_16255 PF03061 Thioesterase superfamily LGL88_16260 PF00892 EamA-like transporter family LGL88_16265 PF01544 CorA-like Mg2+ transporter protein LGL88_16275 PF09370 Phosphoenolpyruvate hydrolase-like LGL88_16290 PF13361 UvrD-like helicase C-terminal domain LGL88_16290 PF00580 UvrD/REP helicase N-terminal domain LGL88_16295 PF13419 Haloacid dehalogenase-like hydrolase LGL88_16300 PF00589 Phage integrase family LGL88_16300 PF02899 Phage integrase, N-terminal SAM-like domain LGL88_16305 PF04340 Protein of unknown function, DUF484 LGL88_16310 PF01678 Diaminopimelate epimerase LGL88_16315 PF13627 Prokaryotic lipoprotein-attachment site LGL88_16320 PF01491 Frataxin-like domain LGL88_16325 PF01295 Adenylate cyclase, class-I LGL88_16325 PF12633 Adenylate cyclase NT domain LGL88_16330 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LGL88_16330 PF03900 Porphobilinogen deaminase, C-terminal domain LGL88_16335 PF02602 Uroporphyrinogen-III synthase HemD LGL88_16340 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LGL88_16345 PF07719 Tetratricopeptide repeat LGL88_16345 PF07219 HemY protein N-terminus LGL88_16375 PF00324 Amino acid permease LGL88_16380 PF03808 Glycosyl transferase WecB/TagA/CpsF family LGL88_16385 PF06899 WzyE protein, O-antigen assembly polymerase LGL88_16390 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LGL88_16395 PF01943 Polysaccharide biosynthesis protein LGL88_16400 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LGL88_16410 PF00483 Nucleotidyl transferase LGL88_16415 PF16363 GDP-mannose 4,6 dehydratase LGL88_16420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LGL88_16420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LGL88_16420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LGL88_16425 PF02350 UDP-N-acetylglucosamine 2-epimerase LGL88_16430 PF02706 Chain length determinant protein LGL88_16435 PF00953 Glycosyl transferase family 4 LGL88_16440 PF07498 Rho termination factor, N-terminal domain LGL88_16440 PF07497 Rho termination factor, RNA-binding domain LGL88_16440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LGL88_16445 PF00085 Thioredoxin LGL88_16450 PF00270 DEAD/DEAH box helicase LGL88_16450 PF00271 Helicase conserved C-terminal domain LGL88_16455 PF02541 Ppx/GppA phosphatase family LGL88_16460 PF00580 UvrD/REP helicase N-terminal domain LGL88_16460 PF13361 UvrD-like helicase C-terminal domain LGL88_16470 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LGL88_16470 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LGL88_16475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_16475 PF03466 LysR substrate binding domain LGL88_16480 PF18416 N-acetylglucosamine binding protein domain 2 LGL88_16480 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LGL88_16485 PF00291 Pyridoxal-phosphate dependent enzyme LGL88_16485 PF00585 C-terminal regulatory domain of Threonine dehydratase LGL88_16490 PF00920 Dehydratase family LGL88_16495 PF01063 Amino-transferase class IV LGL88_16505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LGL88_16505 PF00205 Thiamine pyrophosphate enzyme, central domain LGL88_16505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LGL88_16510 PF08046 IlvGEDA operon leader peptide LGL88_16515 PF13335 Magnesium chelatase, subunit ChlI C-terminal LGL88_16515 PF01078 Magnesium chelatase, subunit ChlI LGL88_16520 PF04219 Protein of unknown function, DUF LGL88_16525 PF03466 LysR substrate binding domain LGL88_16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_16580 PF01177 Asp/Glu/Hydantoin racemase LGL88_16585 PF00593 TonB dependent receptor LGL88_16585 PF07715 TonB-dependent Receptor Plug Domain LGL88_16590 PF05958 tRNA (Uracil-5-)-methyltransferase LGL88_16595 PF07226 Protein of unknown function (DUF1422) LGL88_16600 PF00440 Bacterial regulatory proteins, tetR family LGL88_16605 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_16605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LGL88_16610 PF03466 LysR substrate binding domain LGL88_16610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_16615 PF08534 Redoxin LGL88_16615 PF00462 Glutaredoxin LGL88_16620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LGL88_16620 PF07992 Pyridine nucleotide-disulphide oxidoreductase LGL88_16640 PF00529 HlyD membrane-fusion protein of T1SS LGL88_16645 PF00005 ABC transporter LGL88_16645 PF00664 ABC transporter transmembrane region LGL88_16655 PF07715 TonB-dependent Receptor Plug Domain LGL88_16655 PF00593 TonB dependent receptor LGL88_16660 PF14698 Argininosuccinate lyase C-terminal LGL88_16660 PF00206 Lyase LGL88_16665 PF00764 Arginosuccinate synthase LGL88_16670 PF00696 Amino acid kinase family LGL88_16675 PF02774 Semialdehyde dehydrogenase, dimerisation domain LGL88_16675 PF01118 Semialdehyde dehydrogenase, NAD binding domain LGL88_16680 PF01546 Peptidase family M20/M25/M40 LGL88_16680 PF07687 Peptidase dimerisation domain LGL88_16685 PF00311 Phosphoenolpyruvate carboxylase LGL88_16700 PF02219 Methylenetetrahydrofolate reductase LGL88_16720 PF03447 Homoserine dehydrogenase, NAD binding domain LGL88_16720 PF00742 Homoserine dehydrogenase LGL88_16720 PF00696 Amino acid kinase family LGL88_16725 PF01053 Cys/Met metabolism PLP-dependent enzyme LGL88_16730 PF01340 Met Apo-repressor, MetJ LGL88_16735 PF01197 Ribosomal protein L31 LGL88_16740 PF00270 DEAD/DEAH box helicase LGL88_16740 PF00271 Helicase conserved C-terminal domain LGL88_16740 PF17764 3′ DNA-binding domain (3′BD) LGL88_16740 PF18074 Primosomal protein N C-terminal domain LGL88_16740 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LGL88_16745 PF00356 Bacterial regulatory proteins, lacI family LGL88_16750 PF05036 Sporulation related domain LGL88_16755 PF00227 Proteasome subunit LGL88_16760 PF10431 C-terminal, D2-small domain, of ClpB protein LGL88_16760 PF07724 AAA domain (Cdc48 subfamily) LGL88_16760 PF00004 ATPase family associated with various cellular activities (AAA) LGL88_16765 PF01040 UbiA prenyltransferase family LGL88_16770 PF03737 Aldolase/RraA LGL88_16775 PF06005 Cell division protein ZapB LGL88_16780 PF00230 Major intrinsic protein LGL88_16785 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LGL88_16785 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LGL88_16790 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LGL88_16795 PF07690 Major Facilitator Superfamily LGL88_16800 PF00970 Oxidoreductase FAD-binding domain LGL88_16800 PF00175 Oxidoreductase NAD-binding domain LGL88_16805 PF05656 Protein of unknown function (DUF805) LGL88_16810 PF07305 Protein of unknown function (DUF1454) LGL88_16815 PF00121 Triosephosphate isomerase LGL88_16825 PF00365 Phosphofructokinase LGL88_16830 PF16916 Dimerisation domain of Zinc Transporter LGL88_16830 PF01545 Cation efflux family LGL88_16835 PF07813 LTXXQ motif family protein LGL88_16840 PF00486 Transcriptional regulatory protein, C terminal LGL88_16840 PF00072 Response regulator receiver domain LGL88_16845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_16845 PF00672 HAMP domain LGL88_16845 PF16527 Two-component sensor protein CpxA, periplasmic domain LGL88_16845 PF00512 His Kinase A (phospho-acceptor) domain LGL88_16850 PF00588 SpoU rRNA Methylase family LGL88_16855 PF06426 Serine acetyltransferase, N-terminal LGL88_16855 PF00132 Bacterial transferase hexapeptide (six repeats) LGL88_16860 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LGL88_16860 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LGL88_16865 PF02556 Preprotein translocase subunit SecB LGL88_16870 PF00462 Glutaredoxin LGL88_16875 PF00581 Rhodanese-like domain LGL88_16880 PF01676 Metalloenzyme superfamily LGL88_16880 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LGL88_16885 PF01551 Peptidase family M23 LGL88_16890 PF04748 Divergent polysaccharide deacetylase LGL88_16895 PF00107 Zinc-binding dehydrogenase LGL88_16895 PF08240 Alcohol dehydrogenase GroES-like domain LGL88_16900 PF00155 Aminotransferase class I and II LGL88_16905 PF01370 NAD dependent epimerase/dehydratase family LGL88_16910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LGL88_16915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LGL88_16920 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LGL88_16925 PF00535 Glycosyl transferase family 2 LGL88_16930 PF01467 Cytidylyltransferase-like LGL88_16935 PF06827 Zinc finger found in FPG and IleRS LGL88_16935 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LGL88_16935 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LGL88_16940 PF00471 Ribosomal protein L33 LGL88_16945 PF00830 Ribosomal L28 family LGL88_16950 PF04002 RadC-like JAB domain LGL88_16955 PF04127 DNA / pantothenate metabolism flavoprotein LGL88_16955 PF02441 Flavoprotein LGL88_16960 PF00692 dUTPase LGL88_16965 PF00440 Bacterial regulatory proteins, tetR family LGL88_16970 PF00156 Phosphoribosyl transferase domain LGL88_16975 PF01138 3' exoribonuclease family, domain 1 LGL88_16975 PF03725 3' exoribonuclease family, domain 2 LGL88_16980 PF03755 YicC-like family, N-terminal region LGL88_16980 PF08340 Domain of unknown function (DUF1732) LGL88_17015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LGL88_17015 PF03466 LysR substrate binding domain LGL88_17020 PF00563 EAL domain LGL88_17020 PF00990 Diguanylate cyclase, GGDEF domain LGL88_17020 PF13426 PAS domain LGL88_17025 PF00378 Enoyl-CoA hydratase/isomerase LGL88_17030 PF01773 Na+ dependent nucleoside transporter N-terminus LGL88_17030 PF07670 Nucleoside recognition LGL88_17030 PF07662 Na+ dependent nucleoside transporter C-terminus LGL88_17040 PF03458 UPF0126 domain LGL88_17045 PF01653 NAD-dependent DNA ligase adenylation domain LGL88_17045 PF03120 NAD-dependent DNA ligase OB-fold domain LGL88_17050 PF00625 Guanylate kinase LGL88_17055 PF01192 RNA polymerase Rpb6 LGL88_17060 PF13291 ACT domain LGL88_17060 PF04607 Region found in RelA / SpoT proteins LGL88_17060 PF02824 TGS domain LGL88_17065 PF00588 SpoU rRNA Methylase family LGL88_17065 PF12105 SpoU, rRNA methylase, C-terminal LGL88_17070 PF00271 Helicase conserved C-terminal domain LGL88_17070 PF00270 DEAD/DEAH box helicase LGL88_17070 PF17191 RecG wedge domain LGL88_17075 PF03616 Sodium/glutamate symporter LGL88_17080 PF00860 Permease family LGL88_17085 PF05170 AsmA family LGL88_17090 PF00583 Acetyltransferase (GNAT) family LGL88_17090 PF09500 Putative thioesterase (yiiD_Cterm) LGL88_17095 PF02580 D-Tyr-tRNA(Tyr) deacylase LGL88_17100 PF03631 Virulence factor BrkB LGL88_17105 PF13419 Haloacid dehalogenase-like hydrolase LGL88_17110 PF00679 Elongation factor G C-terminus LGL88_17110 PF00009 Elongation factor Tu GTP binding domain LGL88_17110 PF03144 Elongation factor Tu domain 2 LGL88_17115 PF03951 Glutamine synthetase, beta-Grasp domain LGL88_17115 PF00120 Glutamine synthetase, catalytic domain LGL88_17120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LGL88_17120 PF00512 His Kinase A (phospho-acceptor) domain LGL88_17120 PF00989 PAS fold LGL88_17125 PF00158 Sigma-54 interaction domain LGL88_17125 PF02954 Bacterial regulatory protein, Fis family LGL88_17125 PF00072 Response regulator receiver domain LGL88_17130 PF04055 Radical SAM superfamily LGL88_17130 PF06969 HemN C-terminal domain LGL88_17135 PF04220 Der GTPase activator (YihI) LGL88_17140 PF01926 50S ribosome-binding GTPase LGL88_17145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LGL88_17145 PF01612 3'-5' exonuclease LGL88_17145 PF00476 DNA polymerase family A LGL88_17145 PF01367 5'-3' exonuclease, C-terminal SAM fold LGL88_17150 PF01323 DSBA-like thioredoxin domain LGL88_17155 PF01636 Phosphotransferase enzyme family LGL88_17160 PF06288 Protein of unknown function (DUF1040) LGL88_17165 PF12804 MobA-like NTP transferase domain LGL88_17170 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LGL88_17195 PF07729 FCD domain LGL88_17195 PF00392 Bacterial regulatory proteins, gntR family LGL88_17200 PF00356 Bacterial regulatory proteins, lacI family LGL88_17205 PF00294 pfkB family carbohydrate kinase LGL88_17210 PF13407 Periplasmic binding protein domain LGL88_17215 PF02653 Branched-chain amino acid transport system / permease component LGL88_17220 PF00005 ABC transporter LGL88_17225 PF05025 RbsD / FucU transport protein family LGL88_17230 PF02705 K+ potassium transporter LGL88_17235 PF12592 Protein of unknown function (DUF3763) LGL88_17235 PF07728 AAA domain (dynein-related subfamily) LGL88_17235 PF17868 AAA lid domain LGL88_17240 PF05762 VWA domain containing CoxE-like protein LGL88_17250 PF03590 Aspartate-ammonia ligase LGL88_17255 PF01037 Lrp/AsnC ligand binding domain LGL88_17260 PF00258 Flavodoxin LGL88_17265 PF13932 GidA associated domain LGL88_17265 PF01134 Glucose inhibited division protein A LGL88_17270 PF02527 rRNA small subunit methyltransferase G LGL88_17275 PF03899 ATP synthase I chain LGL88_17280 PF00119 ATP synthase A chain LGL88_17285 PF00137 ATP synthase subunit C LGL88_17290 PF00430 ATP synthase B/B' CF(0) LGL88_17295 PF00213 ATP synthase delta (OSCP) subunit LGL88_17300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LGL88_17300 PF00306 ATP synthase alpha/beta chain, C terminal domain LGL88_17300 PF02874 ATP synthase alpha/beta family, beta-barrel domain LGL88_17305 PF00231 ATP synthase LGL88_17310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LGL88_17310 PF02874 ATP synthase alpha/beta family, beta-barrel domain LGL88_17315 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LGL88_17315 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LGL88_17320 PF12804 MobA-like NTP transferase domain LGL88_17320 PF00132 Bacterial transferase hexapeptide (six repeats) LGL88_17325 PF01380 SIS domain LGL88_17330 PF12849 PBP superfamily domain LGL88_17335 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_17340 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_17345 PF00005 ABC transporter LGL88_17350 PF01895 PhoU domain LGL88_17355 PF00497 Bacterial extracellular solute-binding proteins, family 3 LGL88_17360 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_17365 PF00528 Binding-protein-dependent transport system inner membrane component LGL88_17370 PF00860 Permease family LGL88_17375 PF02203 Tar ligand binding domain homologue LGL88_17375 PF00672 HAMP domain LGL88_17375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LGL88_17385 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LGL88_17385 PF02753 Pili assembly chaperone PapD, C-terminal domain LGL88_17390 PF13953 PapC C-terminal domain LGL88_17390 PF00577 Outer membrane usher protein LGL88_17390 PF13954 PapC N-terminal domain LGL88_17400 PF01926 50S ribosome-binding GTPase LGL88_17400 PF12631 MnmE helical domain LGL88_17400 PF10396 GTP-binding protein TrmE N-terminus LGL88_17405 PF02096 60Kd inner membrane protein LGL88_17405 PF14849 YidC periplasmic domain LGL88_17410 PF01809 Putative membrane protein insertion efficiency factor LGL88_17415 PF00825 Ribonuclease P LGL88_17420 PF00468 Ribosomal protein L34