locus-tag class description UGYR_00010 PF11940 Domain of unknown function (DUF3458) Ig-like fold UGYR_00010 PF17432 Domain of unknown function (DUF3458_C) ARM repeats UGYR_00010 PF01433 Peptidase family M1 domain UGYR_00015 PF01180 Dihydroorotate dehydrogenase UGYR_00020 PF07126 Cell-division protein ZapC UGYR_00025 PF03473 MOSC domain UGYR_00025 PF03476 MOSC N-terminal beta barrel domain UGYR_00025 PF00111 2Fe-2S iron-sulfur cluster binding domain UGYR_00030 PF01170 Putative RNA methylase family UPF0020 UGYR_00030 PF02926 THUMP domain UGYR_00030 PF10672 S-adenosylmethionine-dependent methyltransferase UGYR_00035 PF16326 ABC transporter C-terminal domain UGYR_00035 PF00005 ABC transporter UGYR_00035 PF12848 ABC transporter UGYR_00040 PF04403 Paraquat-inducible protein A UGYR_00045 PF02470 MlaD protein UGYR_00050 PF03886 ABC-type transport auxiliary lipoprotein component UGYR_00055 PF07977 FabA-like domain UGYR_00060 PF13654 AAA domain UGYR_00060 PF05362 Lon protease (S16) C-terminal proteolytic domain UGYR_00065 PF06303 MatP N-terminal domain UGYR_00065 PF17414 MatP C-terminal ribbon-helix-helix domain UGYR_00070 PF01389 OmpA-like transmembrane domain UGYR_00070 PF00691 OmpA family UGYR_00075 PF03846 Cell division inhibitor SulA UGYR_00080 PF04994 TfoX C-terminal domain UGYR_00080 PF04993 TfoX N-terminal domain UGYR_00085 PF12805 FUSC-like inner membrane protein yccS UGYR_00090 PF03733 Inner membrane component domain UGYR_00095 PF12462 DNA helicase IV / RNA helicase N terminal UGYR_00095 PF00580 UvrD/REP helicase N-terminal domain UGYR_00095 PF13361 UvrD-like helicase C-terminal domain UGYR_00100 PF02142 MGS-like domain UGYR_00105 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) UGYR_00110 PF13380 CoA binding domain UGYR_00115 PF08755 Hemimethylated DNA-binding protein YccV like UGYR_00120 PF10672 S-adenosylmethionine-dependent methyltransferase UGYR_00120 PF17785 PUA-like domain UGYR_00125 PF00708 Acylphosphatase UGYR_00130 PF04358 DsrC like protein UGYR_00140 PF00484 Carbonic anhydrase UGYR_00145 PF00999 Sodium/hydrogen exchanger family UGYR_00145 PF03471 Transporter associated domain UGYR_00145 PF02080 TrkA-C domain UGYR_00155 PF01757 Acyltransferase family UGYR_00160 PF04349 Periplasmic glucan biosynthesis protein, MdoG UGYR_00165 PF00535 Glycosyl transferase family 2 UGYR_00175 PF00854 POT family UGYR_00185 PF03279 Bacterial lipid A biosynthesis acyltransferase UGYR_00195 PF01594 AI-2E family transporter UGYR_00200 PF00196 Bacterial regulatory proteins, luxR family UGYR_00205 PF01266 FAD dependent oxidoreductase UGYR_00210 PF13991 BssS protein family UGYR_00215 PF06183 DinI-like family UGYR_00220 PF01979 Amidohydrolase family UGYR_00225 PF03992 Antibiotic biosynthesis monooxygenase UGYR_00235 PF12111 Polyribonucleotide phosphorylase C terminal UGYR_00235 PF00575 S1 RNA binding domain UGYR_00235 PF10150 Ribonuclease E/G family UGYR_00240 PF00849 RNA pseudouridylate synthase UGYR_00240 PF01479 S4 domain UGYR_00245 PF02545 Maf-like protein UGYR_00250 PF02620 Large ribosomal RNA subunit accumulation protein YceD UGYR_00255 PF01783 Ribosomal L32p protein family UGYR_00260 PF02504 Fatty acid synthesis protein UGYR_00265 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal UGYR_00265 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III UGYR_00270 PF00698 Acyl transferase domain UGYR_00280 PF00550 Phosphopantetheine attachment site UGYR_00285 PF00109 Beta-ketoacyl synthase, N-terminal domain UGYR_00285 PF02801 Beta-ketoacyl synthase, C-terminal domain UGYR_00290 PF01063 Amino-transferase class IV UGYR_00295 PF02618 YceG-like family UGYR_00300 PF02223 Thymidylate kinase UGYR_00305 PF09115 DNA polymerase III, delta subunit, C terminal UGYR_00310 PF01026 TatD related DNase UGYR_00315 PF02378 Phosphotransferase system, EIIC UGYR_00315 PF00367 phosphotransferase system, EIIB UGYR_00320 PF01230 HIT domain UGYR_00325 PF07233 Protein of unknown function (DUF1425) UGYR_00330 PF08139 Prokaryotic membrane lipoprotein lipid attachment site UGYR_00330 PF13036 Peptidoglycan-synthase activator LpoB UGYR_00335 PF01636 Phosphotransferase enzyme family UGYR_00340 PF00933 Glycosyl hydrolase family 3 N terminal domain UGYR_00345 PF05728 Uncharacterised protein family (UPF0227) UGYR_00350 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_00355 PF05433 Glycine zipper 2TM domain UGYR_00360 PF03461 TRCF domain UGYR_00360 PF17757 UvrB interaction domain UGYR_00360 PF00270 DEAD/DEAH box helicase UGYR_00360 PF00271 Helicase conserved C-terminal domain UGYR_00360 PF02559 CarD-like/TRCF domain UGYR_00365 PF02687 FtsX-like permease family UGYR_00365 PF12704 MacB-like periplasmic core domain UGYR_00370 PF00005 ABC transporter UGYR_00375 PF02687 FtsX-like permease family UGYR_00375 PF12704 MacB-like periplasmic core domain UGYR_00380 PF00480 ROK family UGYR_00385 PF02146 Sir2 family UGYR_00390 PF01546 Peptidase family M20/M25/M40 UGYR_00390 PF07687 Peptidase dimerisation domain UGYR_00395 PF08007 Cupin superfamily protein UGYR_00400 PF08918 PhoQ Sensor UGYR_00400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_00405 PF00486 Transcriptional regulatory protein, C terminal UGYR_00405 PF00072 Response regulator receiver domain UGYR_00415 PF08328 Adenylosuccinate lyase C-terminal UGYR_00415 PF00206 Lyase UGYR_00420 PF04356 Protein of unknown function (DUF489) UGYR_00430 PF00293 NUDIX domain UGYR_00435 PF00849 RNA pseudouridylate synthase UGYR_00440 PF00180 Isocitrate/isopropylmalate dehydrogenase UGYR_00445 PF03472 Autoinducer binding domain UGYR_00445 PF00196 Bacterial regulatory proteins, luxR family UGYR_00450 PF00765 Autoinducer synthase UGYR_00455 PF00232 Glycosyl hydrolase family 1 UGYR_00460 PF01432 Peptidase family M3 UGYR_00470 PF03390 2-hydroxycarboxylate transporter family UGYR_00475 PF00072 Response regulator receiver domain UGYR_00480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_00480 PF00989 PAS fold UGYR_00480 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UGYR_00480 PF17203 Single cache domain 3 UGYR_00485 PF00939 Sodium:sulfate symporter transmembrane region UGYR_00490 PF08548 Peptidase M10 serralysin C terminal UGYR_00490 PF00413 Matrixin UGYR_00490 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) UGYR_00495 PF02974 Protease inhibitor Inh UGYR_00500 PF00664 ABC transporter transmembrane region UGYR_00500 PF00005 ABC transporter UGYR_00505 PF00529 HlyD membrane-fusion protein of T1SS UGYR_00510 PF02321 Outer membrane efflux protein UGYR_00525 PF12833 Helix-turn-helix domain UGYR_00525 PF02311 AraC-like ligand binding domain UGYR_00530 PF02562 PhoH-like protein UGYR_00535 PF01699 Sodium/calcium exchanger protein UGYR_00540 PF04954 Siderophore-interacting protein UGYR_00540 PF08021 Siderophore-interacting FAD-binding domain UGYR_00545 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term UGYR_00545 PF07730 Histidine kinase UGYR_00545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_00545 PF00672 HAMP domain UGYR_00550 PF02322 Cytochrome bd terminal oxidase subunit II UGYR_00555 PF01654 Cytochrome bd terminal oxidase subunit I UGYR_00560 PF00155 Aminotransferase class I and II UGYR_00560 PF00392 Bacterial regulatory proteins, gntR family UGYR_00565 PF00202 Aminotransferase class-III UGYR_00570 PF04958 Arginine N-succinyltransferase beta subunit UGYR_00575 PF00171 Aldehyde dehydrogenase family UGYR_00580 PF04996 Succinylarginine dihydrolase UGYR_00590 PF00267 Gram-negative porin UGYR_00600 PF01979 Amidohydrolase family UGYR_00605 PF07702 UTRA domain UGYR_00605 PF00392 Bacterial regulatory proteins, gntR family UGYR_00610 PF01979 Amidohydrolase family UGYR_00615 PF05962 HutD UGYR_00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_00620 PF03466 LysR substrate binding domain UGYR_00630 PF03824 High-affinity nickel-transport protein UGYR_00635 PF00708 Acylphosphatase UGYR_00635 PF07503 HypF finger UGYR_00635 PF17788 HypF Kae1-like domain UGYR_00635 PF01300 Telomere recombination UGYR_00640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UGYR_00640 PF01568 Molydopterin dinucleotide binding domain UGYR_00640 PF00384 Molybdopterin oxidoreductase UGYR_00645 PF12800 4Fe-4S binding domain UGYR_00645 PF13247 4Fe-4S dicluster domain UGYR_00650 PF01750 Hydrogenase maturation protease UGYR_00655 PF07450 Formate hydrogenlyase maturation protein HycH UGYR_00660 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit UGYR_00665 PF12838 4Fe-4S dicluster domain UGYR_00670 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit UGYR_00670 PF00374 Nickel-dependent hydrogenase UGYR_00670 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit UGYR_00675 PF00146 NADH dehydrogenase UGYR_00680 PF00361 Proton-conducting membrane transporter UGYR_00685 PF13247 4Fe-4S dicluster domain UGYR_00690 PF11046 Transcriptional repressor of hyc and hyp operons UGYR_00695 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UGYR_00700 PF02492 CobW/HypB/UreG, nucleotide-binding domain UGYR_00705 PF01455 HupF/HypC family UGYR_00710 PF01924 Hydrogenase formation hypA family UGYR_00715 PF00586 AIR synthase related protein, N-terminal domain UGYR_00715 PF02769 AIR synthase related protein, C-terminal domain UGYR_00720 PF01590 GAF domain UGYR_00720 PF02954 Bacterial regulatory protein, Fis family UGYR_00720 PF00158 Sigma-54 interaction domain UGYR_00735 PF13954 PapC N-terminal domain UGYR_00735 PF00577 Outer membrane usher protein UGYR_00740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_00740 PF02753 Pili assembly chaperone PapD, C-terminal domain UGYR_00755 PF12833 Helix-turn-helix domain UGYR_00760 PF01926 50S ribosome-binding GTPase UGYR_00760 PF06071 Protein of unknown function (DUF933) UGYR_00770 PF01195 Peptidyl-tRNA hydrolase UGYR_00775 PF10762 Protein of unknown function (DUF2583) UGYR_00780 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase UGYR_00780 PF14572 Phosphoribosyl synthetase-associated domain UGYR_00785 PF08544 GHMP kinases C terminal UGYR_00785 PF00288 GHMP kinases N terminal domain UGYR_00790 PF03550 Outer membrane lipoprotein LolB UGYR_00795 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain UGYR_00795 PF01488 Shikimate / quinate 5-dehydrogenase UGYR_00795 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain UGYR_00800 PF00472 RF-1 domain UGYR_00800 PF03462 PCRF domain UGYR_00805 PF13847 Methyltransferase domain UGYR_00805 PF17827 PrmC N-terminal domain UGYR_00810 PF04247 Invasion gene expression up-regulator, SirB UGYR_00815 PF13369 Transglutaminase-like superfamily UGYR_00820 PF00793 DAHP synthetase I family UGYR_00825 PF01740 STAS domain UGYR_00825 PF00916 Sulfate permease family UGYR_00830 PF01527 Transposase UGYR_00840 PF00990 Diguanylate cyclase, GGDEF domain UGYR_00850 PF03009 Glycerophosphoryl diester phosphodiesterase family UGYR_00860 PF00854 POT family UGYR_00865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UGYR_00870 PF02811 PHP domain UGYR_00875 PF02613 Nitrate reductase delta subunit UGYR_00880 PF07273 Protein of unknown function (DUF1439) UGYR_00890 PF07690 Major Facilitator Superfamily UGYR_00895 PF13302 Acetyltransferase (GNAT) domain UGYR_00900 PF04337 Protein of unknown function, DUF480 UGYR_00905 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UGYR_00910 PF03023 Lipid II flippase MurJ UGYR_00915 PF08479 POTRA domain, ShlB-type UGYR_00915 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB UGYR_00915 PF17287 POTRA domain UGYR_00920 PF05860 haemagglutination activity domain UGYR_00920 PF13332 Hemagglutinin repeat UGYR_00930 PF00750 tRNA synthetases class I (R) UGYR_00930 PF05746 DALR anticodon binding domain UGYR_00930 PF03485 Arginyl tRNA synthetase N terminal domain UGYR_00935 PF06185 YecM protein UGYR_00940 PF03932 CutC family UGYR_00945 PF08003 Protein of unknown function (DUF1698) UGYR_00950 PF13649 Methyltransferase domain UGYR_00955 PF01124 MAPEG family UGYR_00960 PF01904 Protein of unknown function DUF72 UGYR_00970 PF01336 OB-fold nucleic acid binding domain UGYR_00970 PF02938 GAD domain UGYR_00970 PF00152 tRNA synthetases class II (D, K and N) UGYR_00975 PF00293 NUDIX domain UGYR_00980 PF01709 Transcriptional regulator UGYR_00985 PF02075 Crossover junction endodeoxyribonuclease RuvC UGYR_00990 PF07499 RuvA, C-terminal domain UGYR_00990 PF01330 RuvA N terminal domain UGYR_00995 PF17864 RuvB AAA lid domain UGYR_00995 PF05491 RuvB C-terminal winged helix domain UGYR_00995 PF05496 Holliday junction DNA helicase RuvB P-loop domain UGYR_01000 PF00854 POT family UGYR_01005 PF00950 ABC 3 transport family UGYR_01010 PF00005 ABC transporter UGYR_01015 PF01297 Zinc-uptake complex component A periplasmic UGYR_01020 PF01476 LysM domain UGYR_01020 PF08525 Opacity-associated protein A N-terminal motif UGYR_01020 PF01551 Peptidase family M23 UGYR_01025 PF03279 Bacterial lipid A biosynthesis acyltransferase UGYR_01030 PF00224 Pyruvate kinase, barrel domain UGYR_01030 PF02887 Pyruvate kinase, alpha/beta domain UGYR_01035 PF01380 SIS domain UGYR_01035 PF01418 Helix-turn-helix domain, rpiR family UGYR_01040 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain UGYR_01040 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain UGYR_01045 PF01081 KDPG and KHG aldolase UGYR_01050 PF00893 Small Multidrug Resistance protein UGYR_01055 PF00893 Small Multidrug Resistance protein UGYR_01060 PF01042 Endoribonuclease L-PSP UGYR_01065 PF13307 Helicase C-terminal domain UGYR_01065 PF04851 Type III restriction enzyme, res subunit UGYR_01070 PF00814 Glycoprotease family UGYR_01075 PF03843 Outer membrane lipoprotein Slp family UGYR_01080 PF13193 AMP-binding enzyme C-terminal domain UGYR_01080 PF00501 AMP-binding enzyme UGYR_01085 PF00570 HRDC domain UGYR_01085 PF01612 3'-5' exonuclease UGYR_01090 PF03776 Septum formation topological specificity factor MinE UGYR_01095 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain UGYR_01100 PF05209 Septum formation inhibitor MinC, N-terminal domain UGYR_01100 PF03775 Septum formation inhibitor MinC, C-terminal domain UGYR_01105 PF05166 YcgL domain UGYR_01110 PF01557 Fumarylacetoacetate (FAA) hydrolase family UGYR_01115 PF03692 Putative zinc- or iron-chelating domain UGYR_01125 PF02600 Disulfide bond formation protein DsbB UGYR_01130 PF06450 Bacterial Na+/H+ antiporter B (NhaB) UGYR_01135 PF00392 Bacterial regulatory proteins, gntR family UGYR_01135 PF07840 FadR C-terminal domain UGYR_01140 PF04293 SpoVR like protein UGYR_01145 PF01266 FAD dependent oxidoreductase UGYR_01150 PF00842 Alanine racemase, C-terminal domain UGYR_01150 PF01168 Alanine racemase, N-terminal domain UGYR_01155 PF07690 Major Facilitator Superfamily UGYR_01165 PF00563 EAL domain UGYR_01165 PF00990 Diguanylate cyclase, GGDEF domain UGYR_01165 PF13426 PAS domain UGYR_01170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_01170 PF03466 LysR substrate binding domain UGYR_01175 PF03306 Alpha-acetolactate decarboxylase UGYR_01180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UGYR_01180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UGYR_01180 PF00205 Thiamine pyrophosphate enzyme, central domain UGYR_01185 PF04285 Protein of unknown function (DUF444) UGYR_01190 PF08298 PrkA AAA domain UGYR_01190 PF06798 PrkA serine protein kinase C-terminal domain UGYR_01195 PF06629 MltA-interacting protein MipA UGYR_01205 PF01263 Aldose 1-epimerase UGYR_01210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain UGYR_01210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UGYR_01215 PF01641 SelR domain UGYR_01220 PF07023 Protein of unknown function (DUF1315) UGYR_01225 PF00857 Isochorismatase family UGYR_01230 PF17763 Glutaminase/Asparaginase C-terminal domain UGYR_01230 PF00710 Asparaginase, N-terminal UGYR_01235 PF01343 Peptidase family S49 UGYR_01240 PF00881 Nitroreductase family UGYR_01245 PF00586 AIR synthase related protein, N-terminal domain UGYR_01245 PF02769 AIR synthase related protein, C-terminal domain UGYR_01250 PF01751 Toprim domain UGYR_01250 PF01131 DNA topoisomerase UGYR_01255 PF07383 Protein of unknown function (DUF1496) UGYR_01260 PF00293 NUDIX domain UGYR_01265 PF03372 Endonuclease/Exonuclease/phosphatase family UGYR_01280 PF03466 LysR substrate binding domain UGYR_01280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_01295 PF01842 ACT domain UGYR_01295 PF00551 Formyl transferase UGYR_01300 PF02810 SEC-C motif UGYR_01305 PF01734 Patatin-like phospholipase UGYR_01310 PF00072 Response regulator receiver domain UGYR_01315 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UGYR_01315 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UGYR_01315 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain UGYR_01320 PF00816 H-NS histone family UGYR_01325 PF00265 Thymidine kinase UGYR_01330 PF00465 Iron-containing alcohol dehydrogenase UGYR_01330 PF00171 Aldehyde dehydrogenase family UGYR_01335 PF01914 MarC family integral membrane protein UGYR_01345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UGYR_01350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UGYR_01355 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_01360 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_01360 PF12911 N-terminal TM domain of oligopeptide transport permease C UGYR_01365 PF00005 ABC transporter UGYR_01365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UGYR_01370 PF00005 ABC transporter UGYR_01370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UGYR_01375 PF04269 Protein of unknown function, DUF440 UGYR_01380 PF13396 Phospholipase_D-nuclease N-terminal UGYR_01380 PF13091 PLD-like domain UGYR_01400 PF03795 YCII-related domain UGYR_01425 PF02753 Pili assembly chaperone PapD, C-terminal domain UGYR_01425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_01430 PF13954 PapC N-terminal domain UGYR_01430 PF00577 Outer membrane usher protein UGYR_01430 PF13953 PapC C-terminal domain UGYR_01450 PF03544 Gram-negative bacterial TonB protein C-terminal UGYR_01455 PF03061 Thioesterase superfamily UGYR_01460 PF04279 Intracellular septation protein A UGYR_01465 PF00916 Sulfate permease family UGYR_01465 PF01740 STAS domain UGYR_01475 PF03692 Putative zinc- or iron-chelating domain UGYR_01480 PF03922 OmpW family UGYR_01490 PF00290 Tryptophan synthase alpha chain UGYR_01495 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_01500 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UGYR_01500 PF00218 Indole-3-glycerol phosphate synthase UGYR_01505 PF02885 Glycosyl transferase family, helical bundle domain UGYR_01505 PF00591 Glycosyl transferase family, a/b domain UGYR_01510 PF00117 Glutamine amidotransferase class-I UGYR_01515 PF00425 chorismate binding enzyme UGYR_01515 PF04715 Anthranilate synthase component I, N terminal region UGYR_01520 PF02811 PHP domain UGYR_01525 PF01300 Telomere recombination UGYR_01530 PF01479 S4 domain UGYR_01530 PF00849 RNA pseudouridylate synthase UGYR_01535 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP UGYR_01540 PF00106 short chain dehydrogenase UGYR_01545 PF01343 Peptidase family S49 UGYR_01545 PF08496 Peptidase family S49 N-terminal UGYR_01550 PF10692 Protein of unknown function (DUF2498) UGYR_01555 PF01751 Toprim domain UGYR_01555 PF01396 Topoisomerase DNA binding C4 zinc finger UGYR_01555 PF08272 Topoisomerase I zinc-ribbon-like UGYR_01555 PF01131 DNA topoisomerase UGYR_01560 PF03466 LysR substrate binding domain UGYR_01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_01575 PF00330 Aconitase family (aconitate hydratase) UGYR_01575 PF00694 Aconitase C-terminal domain UGYR_01580 PF00925 GTP cyclohydrolase II UGYR_01585 PF01569 PAP2 superfamily UGYR_01590 PF06305 Lipopolysaccharide assembly protein A domain UGYR_01595 PF18073 Rubredoxin metal binding domain UGYR_01605 PF07338 Protein of unknown function (DUF1471) UGYR_01610 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family UGYR_01615 PF01253 Translation initiation factor SUI1 UGYR_01620 PF05433 Glycine zipper 2TM domain UGYR_01625 PF00923 Transaldolase/Fructose-6-phosphate aldolase UGYR_01630 PF05231 MASE1 UGYR_01630 PF00990 Diguanylate cyclase, GGDEF domain UGYR_01630 PF08447 PAS fold UGYR_01630 PF00563 EAL domain UGYR_01630 PF13426 PAS domain UGYR_01630 PF08448 PAS fold UGYR_01635 PF00575 S1 RNA binding domain UGYR_01635 PF00773 RNB domain UGYR_01635 PF08206 Ribonuclease B OB domain UGYR_01640 PF00730 HhH-GPD superfamily base excision DNA repair protein UGYR_01640 PF10576 Iron-sulfur binding domain of endonuclease III UGYR_01640 PF00633 Helix-hairpin-helix motif UGYR_01645 PF02508 Rnf-Nqr subunit, membrane protein UGYR_01650 PF04205 FMN-binding domain UGYR_01655 PF03116 NQR2, RnfD, RnfE family UGYR_01660 PF12833 Helix-turn-helix domain UGYR_01660 PF06445 GyrI-like small molecule binding domain UGYR_01665 PF10531 SLBB domain UGYR_01665 PF13237 4Fe-4S dicluster domain UGYR_01665 PF13375 RnfC Barrel sandwich hybrid domain UGYR_01665 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit UGYR_01670 PF04060 Putative Fe-S cluster UGYR_01675 PF02508 Rnf-Nqr subunit, membrane protein UGYR_01680 PF10754 Protein of unknown function (DUF2569) UGYR_01685 PF01268 Formate--tetrahydrofolate ligase UGYR_01690 PF03848 Tellurite resistance protein TehB UGYR_01690 PF09313 Domain of unknown function (DUF1971) UGYR_01695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain UGYR_01695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UGYR_01700 PF13593 SBF-like CPA transporter family (DUF4137) UGYR_01705 PF00962 Adenosine/AMP deaminase UGYR_01710 PF06097 Bacterial protein of unknown function (DUF945) UGYR_01715 PF01238 Phosphomannose isomerase type I UGYR_01720 PF10415 Fumarase C C-terminus UGYR_01720 PF00206 Lyase UGYR_01725 PF05472 DNA replication terminus site-binding protein (Ter protein) UGYR_01730 PF00480 ROK family UGYR_01740 PF00654 Voltage gated chloride channel UGYR_01745 PF06649 Protein of unknown function (DUF1161) UGYR_01750 PF06932 Protein of unknown function (DUF1283) UGYR_01755 PF02694 Uncharacterised BCR, YnfA/UPF0060 family UGYR_01760 PF00106 short chain dehydrogenase UGYR_01765 PF01510 N-acetylmuramoyl-L-alanine amidase UGYR_01785 PF01048 Phosphorylase superfamily UGYR_01785 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus UGYR_01825 PF13419 Haloacid dehalogenase-like hydrolase UGYR_01835 PF06445 GyrI-like small molecule binding domain UGYR_01840 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain UGYR_01840 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain UGYR_01845 PF00027 Cyclic nucleotide-binding domain UGYR_01845 PF13545 Crp-like helix-turn-helix domain UGYR_01850 PF00582 Universal stress protein family UGYR_01860 PF08220 DeoR-like helix-turn-helix domain UGYR_01860 PF00455 DeoR C terminal sensor domain UGYR_01865 PF03611 PTS system sugar-specific permease component UGYR_01870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UGYR_01875 PF00596 Class II Aldolase and Adducin N-terminal domain UGYR_01880 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family UGYR_01885 PF01261 Xylose isomerase-like TIM barrel UGYR_01890 PF02233 NAD(P) transhydrogenase beta subunit UGYR_01895 PF05222 Alanine dehydrogenase/PNT, N-terminal domain UGYR_01895 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch UGYR_01895 PF01262 Alanine dehydrogenase/PNT, C-terminal domain UGYR_01900 PF07338 Protein of unknown function (DUF1471) UGYR_01905 PF13520 Amino acid permease UGYR_01915 PF00072 Response regulator receiver domain UGYR_01915 PF00486 Transcriptional regulatory protein, C terminal UGYR_01920 PF00672 HAMP domain UGYR_01920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_01920 PF00512 His Kinase A (phospho-acceptor) domain UGYR_01925 PF00080 Copper/zinc superoxide dismutase (SODC) UGYR_01935 PF12833 Helix-turn-helix domain UGYR_01940 PF01161 Phosphatidylethanolamine-binding protein UGYR_01950 PF00089 Trypsin UGYR_01955 PF00270 DEAD/DEAH box helicase UGYR_01955 PF00271 Helicase conserved C-terminal domain UGYR_01955 PF04408 Helicase associated domain (HA2) UGYR_01955 PF11898 Domain of unknown function (DUF3418) UGYR_01955 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold UGYR_01965 PF02525 Flavodoxin-like fold UGYR_01970 PF07027 Protein of unknown function (DUF1318) UGYR_01975 PF13617 YnbE-like lipoprotein UGYR_01985 PF11739 Dicarboxylate transport UGYR_01990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UGYR_01990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UGYR_01995 PF03724 META domain UGYR_02000 PF03891 Domain of unknown function (DUF333) UGYR_02005 PF02308 MgtC family UGYR_02010 PF00893 Small Multidrug Resistance protein UGYR_02015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UGYR_02015 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg UGYR_02015 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II UGYR_02015 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase UGYR_02015 PF10371 Domain of unknown function UGYR_02020 PF01171 PP-loop family UGYR_02025 PF01544 CorA-like Mg2+ transporter protein UGYR_02030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UGYR_02035 PF00246 Zinc carboxypeptidase UGYR_02040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UGYR_02040 PF13378 Enolase C-terminal domain-like UGYR_02045 PF08534 Redoxin UGYR_02050 PF18024 Helix-turn-helix domain UGYR_02050 PF00158 Sigma-54 interaction domain UGYR_02065 PF05128 Domain of unknown function (DUF697) UGYR_02070 PF04317 YcjX-like family, DUF463 UGYR_02075 PF09584 Phage shock protein PspD (Phageshock_PspD) UGYR_02080 PF04024 PspC domain UGYR_02085 PF06667 Phage shock protein B UGYR_02090 PF04012 PspA/IM30 family UGYR_02095 PF02954 Bacterial regulatory protein, Fis family UGYR_02095 PF00158 Sigma-54 interaction domain UGYR_02105 PF02917 Pertussis toxin, subunit 1 UGYR_02115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UGYR_02120 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_02125 PF12911 N-terminal TM domain of oligopeptide transport permease C UGYR_02125 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_02130 PF00005 ABC transporter UGYR_02130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UGYR_02135 PF00005 ABC transporter UGYR_02145 PF00854 POT family UGYR_02155 PF00226 DnaJ domain UGYR_02155 PF01556 DnaJ C terminal domain UGYR_02165 PF04893 Yip1 domain UGYR_02175 PF11656 YjbD family (DUF3811) UGYR_02180 PF00043 Glutathione S-transferase, C-terminal domain UGYR_02180 PF02798 Glutathione S-transferase, N-terminal domain UGYR_02185 PF08543 Phosphomethylpyrimidine kinase UGYR_02190 PF01479 S4 domain UGYR_02190 PF00579 tRNA synthetases class I (W and Y) UGYR_02195 PF01243 Pyridoxamine 5'-phosphate oxidase UGYR_02195 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region UGYR_02200 PF03702 Anhydro-N-acetylmuramic acid kinase UGYR_02205 PF05433 Glycine zipper 2TM domain UGYR_02210 PF01047 MarR family UGYR_02215 PF00248 Aldo/keto reductase family UGYR_02220 PF06945 Protein of unknown function (DUF1289) UGYR_02225 PF08019 Phosphoethanolamine transferase EptA/EptB UGYR_02225 PF00884 Sulfatase UGYR_02230 PF00440 Bacterial regulatory proteins, tetR family UGYR_02230 PF16925 Tetracyclin repressor-like, C-terminal domain UGYR_02235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UGYR_02240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UGYR_02245 PF00929 Exonuclease UGYR_02250 PF00462 Glutaredoxin UGYR_02255 PF00877 NlpC/P60 family UGYR_02260 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain UGYR_02260 PF02777 Iron/manganese superoxide dismutases, C-terminal domain UGYR_02265 PF00356 Bacterial regulatory proteins, lacI family UGYR_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_02270 PF03466 LysR substrate binding domain UGYR_02275 PF07690 Major Facilitator Superfamily UGYR_02285 PF00677 Lumazine binding domain UGYR_02290 PF01554 MatE UGYR_02315 PF02887 Pyruvate kinase, alpha/beta domain UGYR_02315 PF00224 Pyruvate kinase, barrel domain UGYR_02320 PF04728 Lipoprotein leucine-zipper UGYR_02325 PF17969 L,D-transpeptidase C-terminal domain UGYR_02325 PF01476 LysM domain UGYR_02325 PF03734 L,D-transpeptidase catalytic domain UGYR_02330 PF02657 Fe-S metabolism associated domain UGYR_02335 PF00266 Aminotransferase class-V UGYR_02340 PF01458 Uncharacterized protein family (UPF0051) UGYR_02345 PF00005 ABC transporter UGYR_02350 PF01458 Uncharacterized protein family (UPF0051) UGYR_02355 PF01521 Iron-sulphur cluster biosynthesis UGYR_02360 PF03061 Thioesterase superfamily UGYR_02365 PF13183 4Fe-4S dicluster domain UGYR_02365 PF01565 FAD binding domain UGYR_02365 PF02913 FAD linked oxidases, C-terminal domain UGYR_02370 PF01594 AI-2E family transporter UGYR_02375 PF02896 PEP-utilising enzyme, TIM barrel domain UGYR_02375 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain UGYR_02375 PF00391 PEP-utilising enzyme, mobile domain UGYR_02380 PF03618 Kinase/pyrophosphorylase UGYR_02385 PF00793 DAHP synthetase I family UGYR_02390 PF00593 TonB dependent receptor UGYR_02390 PF07715 TonB-dependent Receptor Plug Domain UGYR_02395 PF05171 Haemin-degrading HemS.ChuX domain UGYR_02400 PF01497 Periplasmic binding protein UGYR_02405 PF01032 FecCD transport family UGYR_02410 PF00005 ABC transporter UGYR_02415 PF02696 Uncharacterized ACR, YdiU/UPF0061 family UGYR_02420 PF10437 Bacterial lipoate protein ligase C-terminus UGYR_02420 PF03099 Biotin/lipoate A/B protein ligase family UGYR_02425 PF00877 NlpC/P60 family UGYR_02435 PF00892 EamA-like transporter family UGYR_02440 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase UGYR_02445 PF01522 Polysaccharide deacetylase UGYR_02450 PF00551 Formyl transferase UGYR_02450 PF01370 NAD dependent epimerase/dehydratase family UGYR_02450 PF02911 Formyl transferase, C-terminal domain UGYR_02455 PF00535 Glycosyl transferase family 2 UGYR_02460 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UGYR_02465 PF00005 ABC transporter UGYR_02470 PF01032 FecCD transport family UGYR_02510 PF04606 Ogr/Delta-like zinc finger UGYR_02515 PF05154 TM2 domain UGYR_02520 PF00216 Bacterial DNA-binding protein UGYR_02525 PF01588 Putative tRNA binding domain UGYR_02525 PF03147 Ferredoxin-fold anticodon binding domain UGYR_02525 PF03483 B3/4 domain UGYR_02525 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain UGYR_02525 PF03484 tRNA synthetase B5 domain UGYR_02530 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain UGYR_02530 PF01409 tRNA synthetases class II core domain (F) UGYR_02535 PF00453 Ribosomal protein L20 UGYR_02540 PF01632 Ribosomal protein L35 UGYR_02545 PF05198 Translation initiation factor IF-3, N-terminal domain UGYR_02545 PF00707 Translation initiation factor IF-3, C-terminal domain UGYR_02550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UGYR_02550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UGYR_02550 PF02824 TGS domain UGYR_02550 PF03129 Anticodon binding domain UGYR_02585 PF01914 MarC family integral membrane protein UGYR_02590 PF01464 Transglycosylase SLT domain UGYR_02595 PF01297 Zinc-uptake complex component A periplasmic UGYR_02600 PF00005 ABC transporter UGYR_02605 PF00950 ABC 3 transport family UGYR_02610 PF00950 ABC 3 transport family UGYR_02620 PF14002 YniB-like protein UGYR_02625 PF13419 Haloacid dehalogenase-like hydrolase UGYR_02630 PF04307 LexA-binding, inner membrane-associated putative hydrolase UGYR_02640 PF01510 N-acetylmuramoyl-L-alanine amidase UGYR_02645 PF09339 IclR helix-turn-helix domain UGYR_02645 PF01614 Bacterial transcriptional regulator UGYR_02650 PF07690 Major Facilitator Superfamily UGYR_02655 PF01435 Peptidase family M48 UGYR_02660 PF11818 C-terminal domain of tail specific protease (DUF3340) UGYR_02660 PF00595 PDZ domain UGYR_02660 PF03572 Peptidase family S41 UGYR_02660 PF17804 Tail specific protease N-terminal domain UGYR_02665 PF04352 ProQ/FINO family UGYR_02665 PF17516 ProQ C-terminal domain UGYR_02670 PF13185 GAF domain UGYR_02675 PF04403 Paraquat-inducible protein A UGYR_02680 PF02470 MlaD protein UGYR_02685 PF00990 Diguanylate cyclase, GGDEF domain UGYR_02685 PF00563 EAL domain UGYR_02685 PF01590 GAF domain UGYR_02685 PF00360 Phytochrome region UGYR_02690 PF07351 Protein of unknown function (DUF1480) UGYR_02705 PF05643 Putative bacterial lipoprotein (DUF799) UGYR_02715 PF03783 Curli production assembly/transport component CsgG UGYR_02720 PF10753 Toxin GhoT_OrtT UGYR_02740 PF00144 Beta-lactamase UGYR_02755 PF07022 Bacteriophage CI repressor helix-turn-helix domain UGYR_02755 PF16452 Bacteriophage CI repressor C-terminal domain UGYR_02785 PF05840 Bacteriophage replication gene A protein (GPA) UGYR_02890 PF07484 Phage Tail Collar Domain UGYR_02895 PF02413 Caudovirales tail fibre assembly protein, lambda gpK UGYR_02935 PF04606 Ogr/Delta-like zinc finger UGYR_02940 PF00589 Phage integrase family UGYR_02940 PF02899 Phage integrase, N-terminal SAM-like domain UGYR_02945 PF10709 Protein of unknown function (DUF2511) UGYR_02950 PF05425 Copper resistance protein D UGYR_02955 PF04234 CopC domain UGYR_02960 PF00210 Ferritin-like domain UGYR_02965 PF06440 DNA polymerase III, theta subunit UGYR_02970 PF00561 alpha/beta hydrolase fold UGYR_02975 PF00929 Exonuclease UGYR_02980 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain UGYR_02980 PF00326 Prolyl oligopeptidase family UGYR_02985 PF13995 YebF-like protein UGYR_02995 PF07130 YebG protein UGYR_03000 PF03880 DbpA RNA binding domain UGYR_03000 PF00270 DEAD/DEAH box helicase UGYR_03000 PF00271 Helicase conserved C-terminal domain UGYR_03005 PF02222 ATP-grasp domain UGYR_03010 PF03701 Uncharacterised protein family (UPF0181) UGYR_03015 PF00425 chorismate binding enzyme UGYR_03015 PF04715 Anthranilate synthase component I, N terminal region UGYR_03020 PF00293 NUDIX domain UGYR_03025 PF03313 Serine dehydratase alpha chain UGYR_03025 PF03315 Serine dehydratase beta chain UGYR_03030 PF03471 Transporter associated domain UGYR_03030 PF03741 Integral membrane protein TerC family UGYR_03035 PF03830 PTS system sorbose subfamily IIB component UGYR_03035 PF03610 PTS system fructose IIA component UGYR_03040 PF03609 PTS system sorbose-specific iic component UGYR_03045 PF03613 PTS system mannose/fructose/sorbose family IID component UGYR_03050 PF06173 Protein of unknown function (DUF986) UGYR_03055 PF02659 Putative manganese efflux pump UGYR_03060 PF02441 Flavoprotein UGYR_03075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UGYR_03075 PF02770 Acyl-CoA dehydrogenase, middle domain UGYR_03075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UGYR_03085 PF00732 GMC oxidoreductase UGYR_03085 PF05199 GMC oxidoreductase UGYR_03090 PF00668 Condensation domain UGYR_03090 PF00550 Phosphopantetheine attachment site UGYR_03090 PF13193 AMP-binding enzyme C-terminal domain UGYR_03090 PF00501 AMP-binding enzyme UGYR_03095 PF07690 Major Facilitator Superfamily UGYR_03115 PF13847 Methyltransferase domain UGYR_03120 PF03717 Penicillin-binding Protein dimerisation domain UGYR_03120 PF00905 Penicillin binding protein transpeptidase domain UGYR_03130 PF00313 'Cold-shock' DNA-binding domain UGYR_03135 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP UGYR_03140 PF00324 Amino acid permease UGYR_03155 PF13974 YebO-like protein UGYR_03160 PF13998 MgrB protein UGYR_03165 PF13996 YobH-like protein UGYR_03170 PF10964 Protein of unknown function (DUF2766) UGYR_03180 PF12833 Helix-turn-helix domain UGYR_03190 PF13520 Amino acid permease UGYR_03195 PF00005 ABC transporter UGYR_03195 PF00664 ABC transporter transmembrane region UGYR_03205 PF00990 Diguanylate cyclase, GGDEF domain UGYR_03205 PF00360 Phytochrome region UGYR_03205 PF00563 EAL domain UGYR_03205 PF01590 GAF domain UGYR_03210 PF03372 Endonuclease/Exonuclease/phosphatase family UGYR_03220 PF06411 HdeA/HdeB family UGYR_03225 PF07478 D-ala D-ala ligase C-terminus UGYR_03225 PF01820 D-ala D-ala ligase N-terminus UGYR_03240 PF08241 Methyltransferase domain UGYR_03245 PF00313 'Cold-shock' DNA-binding domain UGYR_03250 PF00313 'Cold-shock' DNA-binding domain UGYR_03260 PF04794 YdjC-like protein UGYR_03265 PF12833 Helix-turn-helix domain UGYR_03265 PF07883 Cupin domain UGYR_03270 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit UGYR_03275 PF00232 Glycosyl hydrolase family 1 UGYR_03280 PF02378 Phosphotransferase system, EIIC UGYR_03285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UGYR_03295 PF01479 S4 domain UGYR_03295 PF00849 RNA pseudouridylate synthase UGYR_03305 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) UGYR_03320 PF13520 Amino acid permease UGYR_03335 PF00849 RNA pseudouridylate synthase UGYR_03340 PF00282 Pyridoxal-dependent decarboxylase conserved domain UGYR_03345 PF13520 Amino acid permease UGYR_03350 PF04960 Glutaminase UGYR_03380 PF13673 Acetyltransferase (GNAT) domain UGYR_03395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UGYR_03395 PF00034 Cytochrome c UGYR_03410 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_03415 PF00005 ABC transporter UGYR_03425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UGYR_03425 PF00672 HAMP domain UGYR_03425 PF02203 Tar ligand binding domain homologue UGYR_03450 PF01066 CDP-alcohol phosphatidyltransferase UGYR_03455 PF01541 GIY-YIG catalytic domain UGYR_03455 PF02151 UvrB/uvrC motif UGYR_03455 PF08459 UvrC Helix-hairpin-helix N-terminal UGYR_03460 PF00196 Bacterial regulatory proteins, luxR family UGYR_03460 PF00072 Response regulator receiver domain UGYR_03465 PF10769 Protein of unknown function (DUF2594) UGYR_03480 PF00324 Amino acid permease UGYR_03485 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain UGYR_03485 PF01276 Orn/Lys/Arg decarboxylase, major domain UGYR_03485 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain UGYR_03490 PF13520 Amino acid permease UGYR_03495 PF18500 CadC C-terminal domain 1 UGYR_03495 PF00486 Transcriptional regulatory protein, C terminal UGYR_03500 PF00474 Sodium:solute symporter family UGYR_03505 PF18327 Proline utilization A proline dehydrogenase N-terminal domain UGYR_03505 PF14850 DNA-binding domain of Proline dehydrogenase UGYR_03505 PF01619 Proline dehydrogenase UGYR_03505 PF00171 Aldehyde dehydrogenase family UGYR_03525 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_03530 PF02899 Phage integrase, N-terminal SAM-like domain UGYR_03535 PF04542 Sigma-70 region 2 UGYR_03535 PF04539 Sigma-70 region 3 UGYR_03535 PF04545 Sigma-70, region 4 UGYR_03540 PF00700 Bacterial flagellin C-terminal helical region UGYR_03540 PF00669 Bacterial flagellin N-terminal helical region UGYR_03540 PF08884 Flagellin D3 domain UGYR_03545 PF08884 Flagellin D3 domain UGYR_03545 PF00669 Bacterial flagellin N-terminal helical region UGYR_03545 PF00700 Bacterial flagellin C-terminal helical region UGYR_03550 PF00700 Bacterial flagellin C-terminal helical region UGYR_03550 PF00669 Bacterial flagellin N-terminal helical region UGYR_03550 PF08884 Flagellin D3 domain UGYR_03555 PF07196 Flagellin hook IN motif UGYR_03555 PF07195 Flagellar hook-associated protein 2 C-terminus UGYR_03555 PF02465 Flagellar hook-associated protein 2 N-terminus UGYR_03560 PF02561 Flagellar protein FliS UGYR_03565 PF05400 Flagellar protein FliT UGYR_03570 PF12833 Helix-turn-helix domain UGYR_03575 PF01966 HD domain UGYR_03580 PF02254 TrkA-N domain UGYR_03580 PF07885 Ion channel UGYR_03585 PF01223 DNA/RNA non-specific endonuclease UGYR_03595 PF02049 Flagellar hook-basal body complex protein FliE UGYR_03600 PF01514 Secretory protein of YscJ/FliF family UGYR_03600 PF08345 Flagellar M-ring protein C-terminal UGYR_03605 PF14842 FliG N-terminal domain UGYR_03605 PF01706 FliG C-terminal domain UGYR_03605 PF14841 FliG middle domain UGYR_03610 PF02108 Flagellar assembly protein FliH UGYR_03615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UGYR_03615 PF18269 T3SS EscN ATPase C-terminal domain UGYR_03620 PF02050 Flagellar FliJ protein UGYR_03625 PF02120 Flagellar hook-length control protein FliK UGYR_03630 PF03748 Flagellar basal body-associated protein FliL UGYR_03635 PF02154 Flagellar motor switch protein FliM UGYR_03635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UGYR_03640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UGYR_03640 PF16973 Flagellar motor switch protein FliN N-terminal UGYR_03645 PF04347 Flagellar biosynthesis protein, FliO UGYR_03650 PF00813 FliP family UGYR_03655 PF01313 Bacterial export proteins, family 3 UGYR_03660 PF01311 Bacterial export proteins, family 1 UGYR_03665 PF00669 Bacterial flagellin N-terminal helical region UGYR_03670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UGYR_03670 PF00460 Flagella basal body rod protein UGYR_03675 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase UGYR_03675 PF10135 Rod binding protein UGYR_03680 PF02119 Flagellar P-ring protein UGYR_03685 PF02107 Flagellar L-ring protein UGYR_03690 PF00460 Flagella basal body rod protein UGYR_03690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UGYR_03695 PF00460 Flagella basal body rod protein UGYR_03695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UGYR_03700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UGYR_03700 PF00460 Flagella basal body rod protein UGYR_03700 PF07559 Flagellar basal body protein FlaE UGYR_03705 PF03963 Flagellar hook capping protein - N-terminal region UGYR_03705 PF13861 FlgD Tudor-like domain UGYR_03705 PF13860 FlgD Ig-like domain UGYR_03710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UGYR_03710 PF00460 Flagella basal body rod protein UGYR_03715 PF00460 Flagella basal body rod protein UGYR_03720 PF17656 FlgA N-terminal domain UGYR_03720 PF13144 Chaperone for flagella basal body P-ring formation UGYR_03725 PF04316 Anti-sigma-28 factor, FlgM UGYR_03730 PF05130 FlgN protein UGYR_03740 PF06366 Flagellar protein FlhE UGYR_03745 PF00771 FHIPEP family UGYR_03750 PF01312 FlhB HrpN YscU SpaS Family UGYR_03760 PF00196 Bacterial regulatory proteins, luxR family UGYR_03770 PF00419 Fimbrial protein UGYR_03780 PF13953 PapC C-terminal domain UGYR_03780 PF00577 Outer membrane usher protein UGYR_03780 PF13954 PapC N-terminal domain UGYR_03785 PF02753 Pili assembly chaperone PapD, C-terminal domain UGYR_03785 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_03795 PF00419 Fimbrial protein UGYR_03825 PF04344 Chemotaxis phosphatase, CheZ UGYR_03830 PF00072 Response regulator receiver domain UGYR_03835 PF01339 CheB methylesterase UGYR_03835 PF00072 Response regulator receiver domain UGYR_03840 PF03705 CheR methyltransferase, all-alpha domain UGYR_03840 PF01739 CheR methyltransferase, SAM binding domain UGYR_03845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UGYR_03845 PF02203 Tar ligand binding domain homologue UGYR_03845 PF00672 HAMP domain UGYR_03850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UGYR_03850 PF00672 HAMP domain UGYR_03850 PF02203 Tar ligand binding domain homologue UGYR_03855 PF01584 CheW-like domain UGYR_03860 PF09078 CheY binding UGYR_03860 PF02895 Signal transducing histidine kinase, homodimeric domain UGYR_03860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_03860 PF01584 CheW-like domain UGYR_03860 PF01627 Hpt domain UGYR_03865 PF00691 OmpA family UGYR_03865 PF13677 Membrane MotB of proton-channel complex MotA/MotB UGYR_03870 PF01618 MotA/TolQ/ExbB proton channel family UGYR_03875 PF05280 Flagellar transcriptional activator (FlhC) UGYR_03880 PF05247 Flagellar transcriptional activator (FlhD) UGYR_03890 PF00582 Universal stress protein family UGYR_03895 PF02308 MgtC family UGYR_03900 PF02203 Tar ligand binding domain homologue UGYR_03900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UGYR_03900 PF00672 HAMP domain UGYR_03905 PF10781 Dextransucrase DSRB UGYR_03910 PF00313 'Cold-shock' DNA-binding domain UGYR_03920 PF00356 Bacterial regulatory proteins, lacI family UGYR_03925 PF02929 Beta galactosidase small chain UGYR_03925 PF00703 Glycosyl hydrolases family 2 UGYR_03925 PF02836 Glycosyl hydrolases family 2, TIM barrel domain UGYR_03925 PF16353 Domain of unknown function(DUF4981) UGYR_03925 PF02837 Glycosyl hydrolases family 2, sugar binding domain UGYR_03930 PF02801 Beta-ketoacyl synthase, C-terminal domain UGYR_03930 PF08659 KR domain UGYR_03930 PF00550 Phosphopantetheine attachment site UGYR_03930 PF00109 Beta-ketoacyl synthase, N-terminal domain UGYR_03930 PF16197 Ketoacyl-synthetase C-terminal extension UGYR_03930 PF14765 Polyketide synthase dehydratase UGYR_03930 PF00698 Acyl transferase domain UGYR_03930 PF00107 Zinc-binding dehydrogenase UGYR_03930 PF08240 Alcohol dehydrogenase GroES-like domain UGYR_03935 PF10777 Inner membrane protein YlaC UGYR_03945 PF14001 YdfZ protein UGYR_03955 PF06167 Glucose-regulated metallo-peptidase M90 UGYR_03970 PF01648 4'-phosphopantetheinyl transferase superfamily UGYR_03970 PF17837 4'-phosphopantetheinyl transferase N-terminal domain UGYR_03975 PF00939 Sodium:sulfate symporter transmembrane region UGYR_03980 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase UGYR_03985 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase UGYR_03990 PF04223 Citrate lyase, alpha subunit (CitF) UGYR_03995 PF03328 HpcH/HpaI aldolase/citrate lyase family UGYR_04000 PF06857 Malonate decarboxylase delta subunit (MdcD) UGYR_04005 PF08218 Citrate lyase ligase C-terminal domain UGYR_04010 PF00989 PAS fold UGYR_04010 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UGYR_04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_04010 PF17203 Single cache domain 3 UGYR_04015 PF12431 Transcriptional regulator UGYR_04015 PF00072 Response regulator receiver domain UGYR_04020 PF00072 Response regulator receiver domain UGYR_04020 PF00196 Bacterial regulatory proteins, luxR family UGYR_04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_04025 PF07730 Histidine kinase UGYR_04025 PF05231 MASE1 UGYR_04030 PF07690 Major Facilitator Superfamily UGYR_04040 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_04045 PF08402 TOBE domain UGYR_04045 PF00005 ABC transporter UGYR_04060 PF04363 Protein of unknown function (DUF496) UGYR_04065 PF04632 Fusaric acid resistance protein family UGYR_04075 PF00929 Exonuclease UGYR_04075 PF08411 Exonuclease C-terminal UGYR_04080 PF13520 Amino acid permease UGYR_04085 PF07715 TonB-dependent Receptor Plug Domain UGYR_04085 PF00593 TonB dependent receptor UGYR_04090 PF00005 ABC transporter UGYR_04095 PF01032 FecCD transport family UGYR_04105 PF00324 Amino acid permease UGYR_04110 PF03466 LysR substrate binding domain UGYR_04110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_04125 PF03601 Conserved hypothetical protein 698 UGYR_04130 PF01261 Xylose isomerase-like TIM barrel UGYR_04135 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UGYR_04135 PF02378 Phosphotransferase system, EIIC UGYR_04140 PF00294 pfkB family carbohydrate kinase UGYR_04145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UGYR_04145 PF00381 PTS HPr component phosphorylation site UGYR_04150 PF00293 NUDIX domain UGYR_04155 PF03264 NapC/NirT cytochrome c family, N-terminal region UGYR_04160 PF01568 Molydopterin dinucleotide binding domain UGYR_04160 PF00384 Molybdopterin oxidoreductase UGYR_04160 PF18364 Molybdopterin oxidoreductase N-terminal domain UGYR_04165 PF03692 Putative zinc- or iron-chelating domain UGYR_04170 PF03222 Tryptophan/tyrosine permease family UGYR_04175 PF09285 Elongation factor P, C-terminal UGYR_04175 PF08207 Elongation factor P (EF-P) KOW-like domain UGYR_04175 PF01132 Elongation factor P (EF-P) OB domain UGYR_04180 PF03786 D-mannonate dehydratase (UxuA) UGYR_04185 PF01232 Mannitol dehydrogenase Rossmann domain UGYR_04185 PF08125 Mannitol dehydrogenase C-terminal domain UGYR_04195 PF07683 Cobalamin synthesis protein cobW C-terminal domain UGYR_04195 PF02492 CobW/HypB/UreG, nucleotide-binding domain UGYR_04200 PF01569 PAP2 superfamily UGYR_04205 PF00877 NlpC/P60 family UGYR_04210 PF12792 CSS motif domain associated with EAL UGYR_04210 PF00563 EAL domain UGYR_04215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UGYR_04220 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_04225 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_04225 PF12911 N-terminal TM domain of oligopeptide transport permease C UGYR_04230 PF00005 ABC transporter UGYR_04230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UGYR_04235 PF13989 YejG-like protein UGYR_04240 PF07690 Major Facilitator Superfamily UGYR_04245 PF00849 RNA pseudouridylate synthase UGYR_04245 PF01479 S4 domain UGYR_04265 PF07208 Protein of unknown function (DUF1414) UGYR_04275 PF11893 Domain of unknown function (DUF3413) UGYR_04275 PF00884 Sulfatase UGYR_04280 PF00884 Sulfatase UGYR_04280 PF11893 Domain of unknown function (DUF3413) UGYR_04295 PF00239 Resolvase, N terminal domain UGYR_04295 PF02796 Helix-turn-helix domain of resolvase UGYR_04300 PF02413 Caudovirales tail fibre assembly protein, lambda gpK UGYR_04305 PF02413 Caudovirales tail fibre assembly protein, lambda gpK UGYR_04315 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) UGYR_04320 PF04865 Baseplate J-like protein UGYR_04365 PF04984 Phage tail sheath protein subtilisin-like domain UGYR_04365 PF17482 Phage tail sheath C-terminal domain UGYR_04405 PF00574 Clp protease UGYR_04415 PF03354 Phage Terminase UGYR_04430 PF09669 Phage regulatory protein Rha (Phage_pRha) UGYR_04430 PF10549 ORF11CD3 domain UGYR_04435 PF03245 Bacteriophage Rz lysis protein UGYR_04465 PF06147 Protein of unknown function (DUF968) UGYR_04485 PF05063 MT-A70 UGYR_04495 PF03354 Phage Terminase UGYR_04520 PF01381 Helix-turn-helix UGYR_04520 PF00717 Peptidase S24-like UGYR_04545 PF10065 Uncharacterized conserved protein (DUF2303) UGYR_04575 PF06183 DinI-like family UGYR_04580 PF12706 Beta-lactamase superfamily domain UGYR_04585 PF00144 Beta-lactamase UGYR_04590 PF13302 Acetyltransferase (GNAT) domain UGYR_04605 PF00267 Gram-negative porin UGYR_04610 PF07690 Major Facilitator Superfamily UGYR_04615 PF01627 Hpt domain UGYR_04615 PF16359 RcsD-ABL domain UGYR_04615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_04620 PF00196 Bacterial regulatory proteins, luxR family UGYR_04620 PF00072 Response regulator receiver domain UGYR_04625 PF00072 Response regulator receiver domain UGYR_04625 PF00512 His Kinase A (phospho-acceptor) domain UGYR_04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_04625 PF09456 RcsC Alpha-Beta-Loop (ABL) UGYR_04630 PF00521 DNA gyrase/topoisomerase IV, subunit A UGYR_04630 PF03989 DNA gyrase C-terminal domain, beta-propeller UGYR_04640 PF02867 Ribonucleotide reductase, barrel domain UGYR_04640 PF00317 Ribonucleotide reductase, all-alpha domain UGYR_04640 PF03477 ATP cone domain UGYR_04645 PF00268 Ribonucleotide reductase, small chain UGYR_04650 PF00111 2Fe-2S iron-sulfur cluster binding domain UGYR_04660 PF03974 Ecotin UGYR_04665 PF00994 Probable molybdopterin binding domain UGYR_04670 PF04138 GtrA-like protein UGYR_04675 PF00535 Glycosyl transferase family 2 UGYR_04685 PF03222 Tryptophan/tyrosine permease family UGYR_04690 PF07437 YfaZ precursor UGYR_04695 PF06628 Catalase-related immune-responsive UGYR_04695 PF00199 Catalase UGYR_04700 PF00501 AMP-binding enzyme UGYR_04700 PF13193 AMP-binding enzyme C-terminal domain UGYR_04705 PF13378 Enolase C-terminal domain-like UGYR_04710 PF00378 Enoyl-CoA hydratase/isomerase UGYR_04715 PF12697 Alpha/beta hydrolase family UGYR_04720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UGYR_04720 PF16582 Middle domain of thiamine pyrophosphate UGYR_04720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UGYR_04725 PF00425 chorismate binding enzyme UGYR_04730 PF05957 Bacterial protein of unknown function (DUF883) UGYR_04735 PF06496 Protein of unknown function (DUF1097) UGYR_04740 PF00361 Proton-conducting membrane transporter UGYR_04745 PF00361 Proton-conducting membrane transporter UGYR_04750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus UGYR_04750 PF00361 Proton-conducting membrane transporter UGYR_04755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L UGYR_04760 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 UGYR_04765 PF12838 4Fe-4S dicluster domain UGYR_04770 PF00146 NADH dehydrogenase UGYR_04775 PF00384 Molybdopterin oxidoreductase UGYR_04775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UGYR_04775 PF01568 Molydopterin dinucleotide binding domain UGYR_04775 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region UGYR_04780 PF10531 SLBB domain UGYR_04780 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit UGYR_04780 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region UGYR_04790 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit UGYR_04790 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit UGYR_04795 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit UGYR_04800 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 UGYR_04805 PF03466 LysR substrate binding domain UGYR_04805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_04815 PF00155 Aminotransferase class I and II UGYR_04825 PF02080 TrkA-C domain UGYR_04825 PF03600 Citrate transporter UGYR_04835 PF03887 YfbU domain UGYR_04840 PF04217 Protein of unknown function, DUF412 UGYR_04845 PF00871 Acetokinase family UGYR_04850 PF01515 Phosphate acetyl/butaryl transferase UGYR_04850 PF07085 DRTGG domain UGYR_04855 PF00356 Bacterial regulatory proteins, lacI family UGYR_04855 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family UGYR_04860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UGYR_04870 PF03611 PTS system sugar-specific permease component UGYR_04875 PF00293 NUDIX domain UGYR_04880 PF12850 Calcineurin-like phosphoesterase superfamily domain UGYR_04890 PF02798 Glutathione S-transferase, N-terminal domain UGYR_04890 PF00043 Glutathione S-transferase, C-terminal domain UGYR_04895 PF01370 NAD dependent epimerase/dehydratase family UGYR_04895 PF08338 Domain of unknown function (DUF1731) UGYR_04900 PF00005 ABC transporter UGYR_04905 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_04910 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_04915 PF00497 Bacterial extracellular solute-binding proteins, family 3 UGYR_04920 PF02441 Flavoprotein UGYR_04925 PF00156 Phosphoribosyl transferase domain UGYR_04930 PF02674 Colicin V production protein UGYR_04935 PF05036 Sporulation related domain UGYR_04940 PF08245 Mur ligase middle domain UGYR_04940 PF02875 Mur ligase family, glutamate ligase domain UGYR_04945 PF17848 Acetyl-coA carboxylase zinc finger domain UGYR_04945 PF01039 Carboxyl transferase domain UGYR_04950 PF09335 SNARE associated Golgi protein UGYR_04955 PF01416 tRNA pseudouridine synthase UGYR_04960 PF01118 Semialdehyde dehydrogenase, NAD binding domain UGYR_04960 PF02774 Semialdehyde dehydrogenase, dimerisation domain UGYR_04965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UGYR_04965 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UGYR_04965 PF11890 Domain of unknown function (DUF3410) UGYR_04985 PF00155 Aminotransferase class I and II UGYR_04990 PF00578 AhpC/TSA family UGYR_05010 PF01527 Transposase UGYR_05030 PF02801 Beta-ketoacyl synthase, C-terminal domain UGYR_05030 PF00109 Beta-ketoacyl synthase, N-terminal domain UGYR_05035 PF05430 S-adenosyl-L-methionine-dependent methyltransferase UGYR_05035 PF01266 FAD dependent oxidoreductase UGYR_05040 PF08891 YfcL protein UGYR_05045 PF04315 Elongation factor P hydroxylase UGYR_05050 PF01925 Sulfite exporter TauE/SafE UGYR_05055 PF03411 Penicillin-insensitive murein endopeptidase UGYR_05060 PF01264 Chorismate synthase UGYR_05065 PF05175 Methyltransferase small domain UGYR_05070 PF01713 Smr domain UGYR_05075 PF00300 Histidine phosphatase superfamily (branch 1) UGYR_05080 PF00378 Enoyl-CoA hydratase/isomerase UGYR_05080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UGYR_05080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UGYR_05085 PF00108 Thiolase, N-terminal domain UGYR_05085 PF02803 Thiolase, C-terminal domain UGYR_05090 PF04175 Protein of unknown function (DUF406) UGYR_05095 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) UGYR_05100 PF04333 MlaA lipoprotein UGYR_05105 PF03918 Cytochrome C biogenesis protein UGYR_05110 PF03918 Cytochrome C biogenesis protein UGYR_05115 PF08534 Redoxin UGYR_05120 PF01578 Cytochrome C assembly protein UGYR_05120 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal UGYR_05125 PF03100 CcmE UGYR_05130 PF04995 Heme exporter protein D (CcmD) UGYR_05135 PF01578 Cytochrome C assembly protein UGYR_05140 PF03379 CcmB protein UGYR_05145 PF00005 ABC transporter UGYR_05160 PF03831 PhnA domain UGYR_05160 PF08274 PhnA Zinc-Ribbon UGYR_05165 PF13406 Transglycosylase SLT domain UGYR_05175 PF01292 Prokaryotic cytochrome b561 UGYR_05180 PF00155 Aminotransferase class I and II UGYR_05185 PF07350 Protein of unknown function (DUF1479) UGYR_05190 PF06580 Histidine kinase UGYR_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_05190 PF07694 5TMR of 5TMR-LYT UGYR_05195 PF00072 Response regulator receiver domain UGYR_05195 PF04397 LytTr DNA-binding domain UGYR_05200 PF07690 Major Facilitator Superfamily UGYR_05205 PF02685 Glucokinase UGYR_05215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_05215 PF03466 LysR substrate binding domain UGYR_05225 PF01566 Natural resistance-associated macrophage protein UGYR_05230 PF01773 Na+ dependent nucleoside transporter N-terminus UGYR_05230 PF07662 Na+ dependent nucleoside transporter C-terminus UGYR_05230 PF07670 Nucleoside recognition UGYR_05265 PF00749 tRNA synthetases class I (E and Q), catalytic domain UGYR_05295 PF12843 Putative quorum-sensing-regulated virulence factor UGYR_05300 PF00533 BRCA1 C Terminus (BRCT) domain UGYR_05300 PF01653 NAD-dependent DNA ligase adenylation domain UGYR_05300 PF03120 NAD-dependent DNA ligase OB-fold domain UGYR_05300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain UGYR_05300 PF12826 Helix-hairpin-helix motif UGYR_05305 PF04354 ZipA, C-terminal FtsZ-binding domain UGYR_05315 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_05320 PF00381 PTS HPr component phosphorylation site UGYR_05325 PF05524 PEP-utilising enzyme, N-terminal UGYR_05325 PF02896 PEP-utilising enzyme, TIM barrel domain UGYR_05325 PF00391 PEP-utilising enzyme, mobile domain UGYR_05330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UGYR_05335 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_05340 PF00005 ABC transporter UGYR_05345 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_05350 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_05360 PF07690 Major Facilitator Superfamily UGYR_05365 PF01380 SIS domain UGYR_05365 PF01418 Helix-turn-helix domain, rpiR family UGYR_05370 PF04074 YhcH/YjgK/YiaL UGYR_05375 PF00480 ROK family UGYR_05380 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase UGYR_05385 PF00701 Dihydrodipicolinate synthetase family UGYR_05390 PF04261 Dyp-type peroxidase family UGYR_05395 PF06572 Protein of unknown function (DUF1131) UGYR_05400 PF04076 Bacterial OB fold (BOF) protein UGYR_05405 PF00583 Acetyltransferase (GNAT) family UGYR_05410 PF01218 Coproporphyrinogen III oxidase UGYR_05415 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 UGYR_05420 PF00390 Malic enzyme, N-terminal domain UGYR_05420 PF03949 Malic enzyme, NAD binding domain UGYR_05420 PF01515 Phosphate acetyl/butaryl transferase UGYR_05425 PF00293 NUDIX domain UGYR_05430 PF03264 NapC/NirT cytochrome c family, N-terminal region UGYR_05435 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) UGYR_05440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UGYR_05440 PF00384 Molybdopterin oxidoreductase UGYR_05440 PF01568 Molydopterin dinucleotide binding domain UGYR_05440 PF10518 TAT (twin-arginine translocation) pathway signal sequence UGYR_05445 PF03927 NapD protein UGYR_05450 PF00037 4Fe-4S binding domain UGYR_05450 PF12800 4Fe-4S binding domain UGYR_05450 PF13187 4Fe-4S dicluster domain UGYR_05460 PF00072 Response regulator receiver domain UGYR_05460 PF00196 Bacterial regulatory proteins, luxR family UGYR_05470 PF00873 AcrB/AcrD/AcrF family UGYR_05480 PF01817 Chorismate mutase type II UGYR_05485 PF03960 ArsC family UGYR_05490 PF07687 Peptidase dimerisation domain UGYR_05490 PF01546 Peptidase family M20/M25/M40 UGYR_05495 PF02557 D-alanyl-D-alanine carboxypeptidase UGYR_05500 PF13980 Uncharacterised protein family (UPF0370) UGYR_05505 PF02230 Phospholipase/Carboxylesterase UGYR_05510 PF05127 Helicase UGYR_05510 PF08351 Domain of unknown function (DUF1726) UGYR_05510 PF17176 tRNA-binding domain UGYR_05510 PF13718 GNAT acetyltransferase 2 UGYR_05515 PF04284 Protein of unknown function (DUF441) UGYR_05520 PF01259 SAICAR synthetase UGYR_05525 PF06804 NlpB/DapX lipoprotein UGYR_05530 PF00701 Dihydrodipicolinate synthetase family UGYR_05535 PF01842 ACT domain UGYR_05540 PF00578 AhpC/TSA family UGYR_05545 PF01594 AI-2E family transporter UGYR_05550 PF01435 Peptidase family M48 UGYR_05550 PF07720 Tetratricopeptide repeat UGYR_05555 PF03960 ArsC family UGYR_05560 PF00308 Bacterial dnaA protein UGYR_05565 PF00860 Permease family UGYR_05575 PF00586 AIR synthase related protein, N-terminal domain UGYR_05575 PF02769 AIR synthase related protein, C-terminal domain UGYR_05580 PF00551 Formyl transferase UGYR_05585 PF13302 Acetyltransferase (GNAT) domain UGYR_05590 PF00005 ABC transporter UGYR_05595 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_05600 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_05610 PF17941 Polyphosphate kinase C-terminal domain 1 UGYR_05610 PF13090 Polyphosphate kinase C-terminal domain 2 UGYR_05610 PF02503 Polyphosphate kinase middle domain UGYR_05610 PF13089 Polyphosphate kinase N-terminal domain UGYR_05615 PF02541 Ppx/GppA phosphatase family UGYR_05625 PF00571 CBS domain UGYR_05625 PF03448 MgtE intracellular N domain UGYR_05625 PF01769 Divalent cation transporter UGYR_05630 PF00012 Hsp70 protein UGYR_05640 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_05640 PF02753 Pili assembly chaperone PapD, C-terminal domain UGYR_05645 PF13954 PapC N-terminal domain UGYR_05645 PF00577 Outer membrane usher protein UGYR_05645 PF13953 PapC C-terminal domain UGYR_05660 PF13533 Biotin-lipoyl like UGYR_05665 PF00873 AcrB/AcrD/AcrF family UGYR_05670 PF00873 AcrB/AcrD/AcrF family UGYR_05675 PF07690 Major Facilitator Superfamily UGYR_05680 PF00512 His Kinase A (phospho-acceptor) domain UGYR_05680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_05680 PF00672 HAMP domain UGYR_05685 PF00486 Transcriptional regulatory protein, C terminal UGYR_05685 PF00072 Response regulator receiver domain UGYR_05690 PF07411 Domain of unknown function (DUF1508) UGYR_05700 PF00781 Diacylglycerol kinase catalytic domain UGYR_05715 PF08543 Phosphomethylpyrimidine kinase UGYR_05775 PF01527 Transposase UGYR_05785 PF02796 Helix-turn-helix domain of resolvase UGYR_05785 PF00239 Resolvase, N terminal domain UGYR_05800 PF00117 Glutamine amidotransferase class-I UGYR_05800 PF00958 GMP synthase C terminal domain UGYR_05800 PF02540 NAD synthase UGYR_05805 PF00571 CBS domain UGYR_05805 PF00478 IMP dehydrogenase / GMP reductase domain UGYR_05810 PF02601 Exonuclease VII, large subunit UGYR_05810 PF13742 OB-fold nucleic acid binding domain UGYR_05815 PF01926 50S ribosome-binding GTPase UGYR_05815 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal UGYR_05820 PF13360 PQQ-like domain UGYR_05825 PF09976 Tetratricopeptide repeat-like domain UGYR_05830 PF03129 Anticodon binding domain UGYR_05830 PF13393 Histidyl-tRNA synthetase UGYR_05835 PF04551 GcpE protein UGYR_05840 PF13464 Domain of unknown function (DUF4115) UGYR_05850 PF04055 Radical SAM superfamily UGYR_05855 PF00334 Nucleoside diphosphate kinase UGYR_05865 PF06832 Penicillin-Binding Protein C-terminus Family UGYR_05865 PF00912 Transglycosylase UGYR_05865 PF00905 Penicillin binding protein transpeptidase domain UGYR_05870 PF11974 Bacterial alpha-2-macroglobulin MG3 domain UGYR_05870 PF00207 Alpha-2-macroglobulin family UGYR_05870 PF07703 Alpha-2-macroglobulin bait region domain UGYR_05870 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain UGYR_05870 PF07678 A-macroglobulin TED domain UGYR_05870 PF17962 Bacterial macroglobulin domain 6 UGYR_05870 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain UGYR_05870 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain UGYR_05870 PF01835 MG2 domain UGYR_05875 PF07179 SseB protein N-terminal domain UGYR_05875 PF14581 SseB protein C-terminal domain UGYR_05880 PF12404 Peptidase UGYR_05880 PF00883 Cytosol aminopeptidase family, catalytic domain UGYR_05885 PF04384 Iron-sulphur cluster assembly UGYR_05890 PF00111 2Fe-2S iron-sulfur cluster binding domain UGYR_05895 PF00012 Hsp70 protein UGYR_05900 PF00226 DnaJ domain UGYR_05900 PF07743 HSCB C-terminal oligomerisation domain UGYR_05905 PF01521 Iron-sulphur cluster biosynthesis UGYR_05910 PF01592 NifU-like N terminal domain UGYR_05915 PF00266 Aminotransferase class-V UGYR_05920 PF02082 Transcriptional regulator UGYR_05925 PF00588 SpoU rRNA Methylase family UGYR_05930 PF00459 Inositol monophosphatase family UGYR_05935 PF03824 High-affinity nickel-transport protein UGYR_05940 PF06226 Protein of unknown function (DUF1007) UGYR_05945 PF00874 PRD domain UGYR_05950 PF12832 MFS_1 like family UGYR_05955 PF00464 Serine hydroxymethyltransferase UGYR_05960 PF00970 Oxidoreductase FAD-binding domain UGYR_05960 PF00042 Globin UGYR_05960 PF00175 Oxidoreductase NAD-binding domain UGYR_05965 PF14502 Helix-turn-helix domain UGYR_05965 PF14503 YhfZ C-terminal domain UGYR_05975 PF01168 Alanine racemase, N-terminal domain UGYR_05980 PF02126 Phosphotriesterase family UGYR_05985 PF10941 Protein of unknown function DUF2620 UGYR_05990 PF10797 Protein of unknown function UGYR_05995 PF00543 Nitrogen regulatory protein P-II UGYR_06000 PF00795 Carbon-nitrogen hydrolase UGYR_06000 PF02540 NAD synthase UGYR_06005 PF00158 Sigma-54 interaction domain UGYR_06005 PF00072 Response regulator receiver domain UGYR_06010 PF13942 YfhG lipoprotein UGYR_06015 PF00512 His Kinase A (phospho-acceptor) domain UGYR_06015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_06030 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain UGYR_06030 PF02769 AIR synthase related protein, C-terminal domain UGYR_06030 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal UGYR_06035 PF00497 Bacterial extracellular solute-binding proteins, family 3 UGYR_06035 PF01464 Transglycosylase SLT domain UGYR_06040 PF14437 MafB19-like deaminase UGYR_06050 PF02378 Phosphotransferase system, EIIC UGYR_06050 PF00367 phosphotransferase system, EIIB UGYR_06055 PF01380 SIS domain UGYR_06060 PF01380 SIS domain UGYR_06060 PF01418 Helix-turn-helix domain, rpiR family UGYR_06065 PF12838 4Fe-4S dicluster domain UGYR_06070 PF01648 4'-phosphopantetheinyl transferase superfamily UGYR_06075 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ UGYR_06080 PF11967 Recombination protein O N terminal UGYR_06080 PF02565 Recombination protein O C terminal UGYR_06085 PF07650 KH domain UGYR_06085 PF01926 50S ribosome-binding GTPase UGYR_06090 PF14622 Ribonuclease-III-like UGYR_06090 PF00035 Double-stranded RNA binding motif UGYR_06095 PF10502 Signal peptidase, peptidase S26 UGYR_06100 PF03144 Elongation factor Tu domain 2 UGYR_06100 PF00009 Elongation factor Tu GTP binding domain UGYR_06100 PF06421 GTP-binding protein LepA C-terminus UGYR_06100 PF00679 Elongation factor G C-terminus UGYR_06110 PF03888 MucB/RseB N-terminal domain UGYR_06110 PF17188 MucB/RseB C-terminal domain UGYR_06115 PF03872 Anti sigma-E protein RseA, N-terminal domain UGYR_06115 PF03873 Anti sigma-E protein RseA, C-terminal domain UGYR_06120 PF04542 Sigma-70 region 2 UGYR_06120 PF08281 Sigma-70, region 4 UGYR_06125 PF02910 Fumarate reductase flavoprotein C-term UGYR_06125 PF00890 FAD binding domain UGYR_06130 PF05175 Methyltransferase small domain UGYR_06135 PF00271 Helicase conserved C-terminal domain UGYR_06135 PF00270 DEAD/DEAH box helicase UGYR_06140 PF12796 Ankyrin repeats (3 copies) UGYR_06150 PF01228 Glycine radical UGYR_06155 PF03167 Uracil DNA glycosylase superfamily UGYR_06160 PF01025 GrpE UGYR_06165 PF01513 ATP-NAD kinase UGYR_06170 PF02463 RecF/RecN/SMC N terminal domain UGYR_06175 PF04355 SmpA / OmlA family UGYR_06180 PF03658 RnfH family Ubiquitin UGYR_06185 PF03364 Polyketide cyclase / dehydrase and lipid transport UGYR_06190 PF01668 SmpB protein UGYR_06195 PF00589 Phage integrase family UGYR_06195 PF13356 Arm DNA-binding domain UGYR_06200 PF13276 HTH-like domain UGYR_06200 PF00665 Integrase core domain UGYR_06200 PF13333 Integrase core domain UGYR_06205 PF01527 Transposase UGYR_06225 PF06114 IrrE N-terminal-like domain UGYR_06235 PF01926 50S ribosome-binding GTPase UGYR_06245 PF01527 Transposase UGYR_06255 PF00271 Helicase conserved C-terminal domain UGYR_06265 PF13356 Arm DNA-binding domain UGYR_06265 PF00589 Phage integrase family UGYR_06280 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_06280 PF02753 Pili assembly chaperone PapD, C-terminal domain UGYR_06285 PF00577 Outer membrane usher protein UGYR_06285 PF13953 PapC C-terminal domain UGYR_06285 PF13954 PapC N-terminal domain UGYR_06300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_06300 PF03466 LysR substrate binding domain UGYR_06315 PF18413 Neuraminidase-like domain UGYR_06315 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain UGYR_06315 PF18413 Neuraminidase-like domain UGYR_06315 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain UGYR_06325 PF03534 Salmonella virulence plasmid 65kDa B protein UGYR_06325 PF12256 Insecticide toxin TcdB middle/N-terminal region UGYR_06325 PF12255 Insecticide toxin TcdB middle/C-terminal region UGYR_06330 PF18807 Tripartite Tc toxins repeat UGYR_06330 PF14431 YwqJ-like deaminase UGYR_06340 PF01527 Transposase UGYR_06345 PF01380 SIS domain UGYR_06345 PF00571 CBS domain UGYR_06350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UGYR_06350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UGYR_06360 PF02653 Branched-chain amino acid transport system / permease component UGYR_06365 PF00005 ABC transporter UGYR_06375 PF00561 alpha/beta hydrolase fold UGYR_06380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_06380 PF03466 LysR substrate binding domain UGYR_06385 PF02652 L-lactate permease UGYR_06390 PF01070 FMN-dependent dehydrogenase UGYR_06395 PF06039 Malate:quinone oxidoreductase (Mqo) UGYR_06400 PF00313 'Cold-shock' DNA-binding domain UGYR_06410 PF06711 Protein of unknown function (DUF1198) UGYR_06415 PF09400 Protein of unknown function (DUF2002) UGYR_06430 PF07972 NrdI Flavodoxin like UGYR_06435 PF02867 Ribonucleotide reductase, barrel domain UGYR_06435 PF08343 Ribonucleotide reductase N-terminal UGYR_06435 PF00317 Ribonucleotide reductase, all-alpha domain UGYR_06440 PF00268 Ribonucleotide reductase, small chain UGYR_06445 PF00571 CBS domain UGYR_06445 PF00005 ABC transporter UGYR_06450 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_06455 PF04069 Substrate binding domain of ABC-type glycine betaine transport system UGYR_06465 PF07690 Major Facilitator Superfamily UGYR_06470 PF01047 MarR family UGYR_06480 PF00529 HlyD membrane-fusion protein of T1SS UGYR_06480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UGYR_06485 PF07690 Major Facilitator Superfamily UGYR_06490 PF08032 RNA 2'-O ribose methyltransferase substrate binding UGYR_06490 PF00588 SpoU rRNA Methylase family UGYR_06495 PF00085 Thioredoxin UGYR_06505 PF00583 Acetyltransferase (GNAT) family UGYR_06505 PF13607 Succinyl-CoA ligase like flavodoxin domain UGYR_06505 PF13380 CoA binding domain UGYR_06510 PF13091 PLD-like domain UGYR_06515 PF10043 Predicted periplasmic lipoprotein (DUF2279) UGYR_06545 PF00005 ABC transporter UGYR_06545 PF09383 NIL domain UGYR_06550 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_06555 PF03180 NLPA lipoprotein UGYR_06560 PF16358 RcsF lipoprotein UGYR_06565 PF01980 tRNA-methyltransferase O UGYR_06565 PF18389 TrmO C-terminal domain UGYR_06570 PF03129 Anticodon binding domain UGYR_06570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UGYR_06570 PF04073 Aminoacyl-tRNA editing domain UGYR_06575 PF04170 NlpE N-terminal domain UGYR_06575 PF17185 NlpE C-terminal OB domain UGYR_06580 PF00472 RF-1 domain UGYR_06585 PF07152 YaeQ protein UGYR_06590 PF06786 Uncharacterised protein family (UPF0253) UGYR_06595 PF07073 Modulator of Rho-dependent transcription termination (ROF) UGYR_06600 PF00034 Cytochrome c UGYR_06605 PF09179 TilS substrate binding domain UGYR_06605 PF01171 PP-loop family UGYR_06605 PF11734 TilS substrate C-terminal domain UGYR_06610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UGYR_06625 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit UGYR_06630 PF07733 Bacterial DNA polymerase III alpha NTPase domain UGYR_06630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain UGYR_06630 PF14579 Helix-hairpin-helix motif UGYR_06630 PF01336 OB-fold nucleic acid binding domain UGYR_06630 PF02811 PHP domain UGYR_06635 PF01351 Ribonuclease HII UGYR_06640 PF02684 Lipid-A-disaccharide synthetase UGYR_06645 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 UGYR_06645 PF00132 Bacterial transferase hexapeptide (six repeats) UGYR_06650 PF07977 FabA-like domain UGYR_06655 PF00132 Bacterial transferase hexapeptide (six repeats) UGYR_06655 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD UGYR_06660 PF03938 Outer membrane protein (OmpH-like) UGYR_06665 PF01103 Surface antigen UGYR_06665 PF07244 Surface antigen variable number repeat UGYR_06670 PF17820 PDZ domain UGYR_06670 PF02163 Peptidase family M50 UGYR_06680 PF01255 Putative undecaprenyl diphosphate synthase UGYR_06685 PF13288 DXP reductoisomerase C-terminal domain UGYR_06685 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain UGYR_06685 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase UGYR_06690 PF01765 Ribosome recycling factor UGYR_06695 PF00696 Amino acid kinase family UGYR_06700 PF00889 Elongation factor TS UGYR_06705 PF00318 Ribosomal protein S2 UGYR_06710 PF00557 Metallopeptidase family M24 UGYR_06715 PF01909 Nucleotidyltransferase domain UGYR_06715 PF01966 HD domain UGYR_06715 PF08335 GlnD PII-uridylyltransferase UGYR_06715 PF01842 ACT domain UGYR_06720 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal UGYR_06720 PF00132 Bacterial transferase hexapeptide (six repeats) UGYR_06720 PF14602 Hexapeptide repeat of succinyl-transferase UGYR_06725 PF11944 Protein of unknown function (DUF3461) UGYR_06730 PF00258 Flavodoxin UGYR_06735 PF00849 RNA pseudouridylate synthase UGYR_06740 PF04287 tRNA pseudouridine synthase C UGYR_06745 PF07348 Syd protein (SUKH-2) UGYR_06750 PF14489 QueF-like protein UGYR_06750 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term UGYR_06755 PF03641 Possible lysine decarboxylase UGYR_06755 PF11892 Domain of unknown function (DUF3412) UGYR_06755 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases UGYR_06760 PF01367 5'-3' exonuclease, C-terminal SAM fold UGYR_06760 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain UGYR_06765 PF01728 FtsJ-like methyltransferase UGYR_06765 PF18125 RlmM ferredoxin-like domain UGYR_06770 PF04241 Protein of unknown function (DUF423) UGYR_06775 PF03466 LysR substrate binding domain UGYR_06775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_06780 PF06004 Bacterial protein of unknown function (DUF903) UGYR_06785 PF00266 Aminotransferase class-V UGYR_06790 PF02657 Fe-S metabolism associated domain UGYR_06795 PF00899 ThiF family UGYR_06800 PF06725 3D domain UGYR_06800 PF03562 MltA specific insert domain UGYR_06820 PF11741 AMIN domain UGYR_06820 PF01520 N-acetylmuramoyl-L-alanine amidase UGYR_06825 PF00696 Amino acid kinase family UGYR_06825 PF00583 Acetyltransferase (GNAT) family UGYR_06830 PF13538 UvrD-like helicase C-terminal domain UGYR_06835 PF13361 UvrD-like helicase C-terminal domain UGYR_06835 PF12705 PD-(D/E)XK nuclease superfamily UGYR_06835 PF00580 UvrD/REP helicase N-terminal domain UGYR_06840 PF05193 Peptidase M16 inactive domain UGYR_06840 PF00675 Insulinase (Peptidase family M16) UGYR_06840 PF16187 Middle or third domain of peptidase_M16 UGYR_06845 PF17946 RecC C-terminal domain UGYR_06850 PF12528 Type II secretion prepilin peptidase dependent protein C UGYR_06850 PF07963 Prokaryotic N-terminal methylation motif UGYR_06865 PF00114 Pilin (bacterial filament) UGYR_06865 PF07963 Prokaryotic N-terminal methylation motif UGYR_06875 PF00303 Thymidylate synthase UGYR_06880 PF01790 Prolipoprotein diacylglyceryl transferase UGYR_06885 PF05524 PEP-utilising enzyme, N-terminal UGYR_06885 PF01590 GAF domain UGYR_06885 PF00391 PEP-utilising enzyme, mobile domain UGYR_06885 PF02896 PEP-utilising enzyme, TIM barrel domain UGYR_06890 PF00293 NUDIX domain UGYR_06895 PF02976 DNA mismatch repair enzyme MutH UGYR_06900 PF03741 Integral membrane protein TerC family UGYR_06905 PF00248 Aldo/keto reductase family UGYR_06910 PF07690 Major Facilitator Superfamily UGYR_06915 PF00501 AMP-binding enzyme UGYR_06915 PF13193 AMP-binding enzyme C-terminal domain UGYR_06915 PF01553 Acyltransferase UGYR_06920 PF00356 Bacterial regulatory proteins, lacI family UGYR_06925 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain UGYR_06925 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain UGYR_06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_06930 PF03466 LysR substrate binding domain UGYR_06935 PF03466 LysR substrate binding domain UGYR_06935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_06975 PF07963 Prokaryotic N-terminal methylation motif UGYR_06975 PF11612 Type II secretion system (T2SS), protein J UGYR_06990 PF07963 Prokaryotic N-terminal methylation motif UGYR_06990 PF08334 Type II secretion system (T2SS), protein G UGYR_06995 PF00482 Type II secretion system (T2SS), protein F UGYR_07000 PF00437 Type II/IV secretion system protein UGYR_07005 PF00263 Bacterial type II and III secretion system protein UGYR_07005 PF03958 Bacterial type II/III secretion system short domain UGYR_07030 PF00005 ABC transporter UGYR_07035 PF02405 Permease MlaE UGYR_07045 PF00152 tRNA synthetases class II (D, K and N) UGYR_07045 PF01336 OB-fold nucleic acid binding domain UGYR_07050 PF00472 RF-1 domain UGYR_07050 PF03462 PCRF domain UGYR_07055 PF01368 DHH family UGYR_07055 PF02272 DHHA1 domain UGYR_07055 PF17768 RecJ OB domain UGYR_07060 PF13098 Thioredoxin-like domain UGYR_07060 PF10411 Disulfide bond isomerase protein N-terminus UGYR_07065 PF02899 Phage integrase, N-terminal SAM-like domain UGYR_07065 PF00589 Phage integrase family UGYR_07070 PF00258 Flavodoxin UGYR_07075 PF07254 Membrane-bound toxin component of toxin-antitoxin system UGYR_07080 PF03937 Flavinator of succinate dehydrogenase UGYR_07085 PF01571 Aminomethyltransferase folate-binding domain UGYR_07090 PF03006 Haemolysin-III related UGYR_07095 PF02347 Glycine cleavage system P-protein UGYR_07100 PF01597 Glycine cleavage H-protein UGYR_07105 PF08669 Glycine cleavage T-protein C-terminal barrel domain UGYR_07105 PF01571 Aminomethyltransferase folate-binding domain UGYR_07110 PF01494 FAD binding domain UGYR_07115 PF01494 FAD binding domain UGYR_07120 PF05195 Aminopeptidase P, N-terminal domain UGYR_07120 PF00557 Metallopeptidase family M24 UGYR_07125 PF03695 Uncharacterised protein family (UPF0149) UGYR_07130 PF05164 Cell division protein ZapA UGYR_07135 PF01812 5-formyltetrahydrofolate cyclo-ligase family UGYR_07140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UGYR_07140 PF01842 ACT domain UGYR_07140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UGYR_07145 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) UGYR_07150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_07150 PF03466 LysR substrate binding domain UGYR_07155 PF04402 Protein of unknown function (DUF541) UGYR_07160 PF01810 LysE type translocator UGYR_07165 PF00924 Mechanosensitive ion channel UGYR_07165 PF05552 Conserved TM helix UGYR_07170 PF01116 Fructose-bisphosphate aldolase class-II UGYR_07175 PF00162 Phosphoglycerate kinase UGYR_07180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain UGYR_07180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UGYR_07185 PF00456 Transketolase, thiamine diphosphate binding domain UGYR_07185 PF02780 Transketolase, C-terminal domain UGYR_07185 PF02779 Transketolase, pyrimidine binding domain UGYR_07195 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain UGYR_07195 PF17944 Arginine decarboxylase C-terminal helical extension UGYR_07195 PF17810 Arginine decarboxylase helical bundle domain UGYR_07200 PF02773 S-adenosylmethionine synthetase, C-terminal domain UGYR_07200 PF02772 S-adenosylmethionine synthetase, central domain UGYR_07200 PF00438 S-adenosylmethionine synthetase, N-terminal domain UGYR_07210 PF04143 Sulphur transport UGYR_07220 PF17283 SprT-like zinc ribbon domain UGYR_07220 PF10263 SprT-like family UGYR_07225 PF04231 Endonuclease I UGYR_07230 PF04452 RNA methyltransferase UGYR_07235 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain UGYR_07235 PF02951 Prokaryotic glutathione synthetase, N-terminal domain UGYR_07240 PF02622 Uncharacterized ACR, COG1678 UGYR_07245 PF03652 Holliday junction resolvase UGYR_07250 PF00795 Carbon-nitrogen hydrolase UGYR_07255 PF04371 Porphyromonas-type peptidyl-arginine deiminase UGYR_07260 PF00437 Type II/IV secretion system protein UGYR_07265 PF01168 Alanine racemase, N-terminal domain UGYR_07270 PF03807 NADP oxidoreductase coenzyme F420-dependent UGYR_07270 PF14748 Pyrroline-5-carboxylate reductase dimerisation UGYR_07275 PF02325 YGGT family UGYR_07280 PF02594 Uncharacterised ACR, YggU family COG1872 UGYR_07285 PF01725 Ham1 family UGYR_07290 PF04055 Radical SAM superfamily UGYR_07290 PF06969 HemN C-terminal domain UGYR_07295 PF11101 Protein of unknown function (DUF2884) UGYR_07300 PF04960 Glutaminase UGYR_07305 PF04320 Protein with unknown function (DUF469) UGYR_07310 PF02390 Putative methyltransferase UGYR_07315 PF14815 NUDIX domain UGYR_07315 PF00730 HhH-GPD superfamily base excision DNA repair protein UGYR_07315 PF00633 Helix-hairpin-helix motif UGYR_07315 PF10576 Iron-sulfur binding domain of endonuclease III UGYR_07320 PF04362 Bacterial Fe(2+) trafficking UGYR_07325 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain UGYR_07325 PF01464 Transglycosylase SLT domain UGYR_07340 PF16456 YmgD protein UGYR_07350 PF03608 PTS system enzyme II sorbitol-specific factor UGYR_07355 PF07663 Sorbitol phosphotransferase enzyme II C-terminus UGYR_07355 PF03612 Sorbitol phosphotransferase enzyme II N-terminus UGYR_07360 PF03829 PTS system glucitol/sorbitol-specific IIA component UGYR_07365 PF00106 short chain dehydrogenase UGYR_07370 PF06923 Glucitol operon activator protein (GutM) UGYR_07375 PF08220 DeoR-like helix-turn-helix domain UGYR_07375 PF00455 DeoR C terminal sensor domain UGYR_07380 PF01380 SIS domain UGYR_07380 PF00571 CBS domain UGYR_07385 PF00294 pfkB family carbohydrate kinase UGYR_07390 PF01228 Glycine radical UGYR_07390 PF02901 Pyruvate formate lyase-like UGYR_07395 PF00871 Acetokinase family UGYR_07400 PF01490 Transmembrane amino acid transporter protein UGYR_07405 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_07410 PF00975 Thioesterase domain UGYR_07410 PF00550 Phosphopantetheine attachment site UGYR_07410 PF13193 AMP-binding enzyme C-terminal domain UGYR_07410 PF00501 AMP-binding enzyme UGYR_07410 PF00668 Condensation domain UGYR_07420 PF00857 Isochorismatase family UGYR_07420 PF00550 Phosphopantetheine attachment site UGYR_07425 PF13193 AMP-binding enzyme C-terminal domain UGYR_07425 PF00501 AMP-binding enzyme UGYR_07430 PF00425 chorismate binding enzyme UGYR_07435 PF01497 Periplasmic binding protein UGYR_07440 PF05977 Transmembrane secretion effector UGYR_07445 PF01032 FecCD transport family UGYR_07450 PF01032 FecCD transport family UGYR_07455 PF00005 ABC transporter UGYR_07465 PF13193 AMP-binding enzyme C-terminal domain UGYR_07465 PF00550 Phosphopantetheine attachment site UGYR_07465 PF00975 Thioesterase domain UGYR_07465 PF00501 AMP-binding enzyme UGYR_07465 PF00668 Condensation domain UGYR_07470 PF03621 MbtH-like protein UGYR_07475 PF11806 Domain of unknown function (DUF3327) UGYR_07475 PF00756 Putative esterase UGYR_07480 PF00593 TonB dependent receptor UGYR_07480 PF07715 TonB-dependent Receptor Plug Domain UGYR_07485 PF08501 Shikimate dehydrogenase substrate binding domain UGYR_07510 PF13629 Pilus formation protein N terminal region UGYR_07510 PF00263 Bacterial type II and III secretion system protein UGYR_07510 PF04972 BON domain UGYR_07525 PF00437 Type II/IV secretion system protein UGYR_07560 PF02472 Biopolymer transport protein ExbD/TolR UGYR_07565 PF01618 MotA/TolQ/ExbB proton channel family UGYR_07570 PF01053 Cys/Met metabolism PLP-dependent enzyme UGYR_07575 PF09335 SNARE associated Golgi protein UGYR_07580 PF12833 Helix-turn-helix domain UGYR_07580 PF06719 AraC-type transcriptional regulator N-terminus UGYR_07585 PF00465 Iron-containing alcohol dehydrogenase UGYR_07590 PF00248 Aldo/keto reductase family UGYR_07595 PF04055 Radical SAM superfamily UGYR_07595 PF08497 Radical SAM N-terminal UGYR_07595 PF11842 Domain of unknown function (DUF3362) UGYR_07600 PF07732 Multicopper oxidase UGYR_07600 PF07731 Multicopper oxidase UGYR_07605 PF01553 Acyltransferase UGYR_07610 PF00521 DNA gyrase/topoisomerase IV, subunit A UGYR_07610 PF03989 DNA gyrase C-terminal domain, beta-propeller UGYR_07615 PF02525 Flavodoxin-like fold UGYR_07620 PF03466 LysR substrate binding domain UGYR_07620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_07625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_07625 PF00986 DNA gyrase B subunit, carboxyl terminus UGYR_07625 PF00204 DNA gyrase B UGYR_07625 PF01751 Toprim domain UGYR_07630 PF05728 Uncharacterised protein family (UPF0227) UGYR_07640 PF06853 Protein of unknown function (DUF1249) UGYR_07645 PF00293 NUDIX domain UGYR_07650 PF02321 Outer membrane efflux protein UGYR_07655 PF06693 Protein of unknown function (DUF1190) UGYR_07660 PF03738 Glutathionylspermidine synthase preATP-grasp UGYR_07665 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase UGYR_07670 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UGYR_07675 PF04380 Membrane fusogenic activity UGYR_07680 PF00294 pfkB family carbohydrate kinase UGYR_07680 PF01467 Cytidylyltransferase-like UGYR_07685 PF03710 Glutamate-ammonia ligase adenylyltransferase UGYR_07685 PF08335 GlnD PII-uridylyltransferase UGYR_07690 PF01928 CYTH domain UGYR_07695 PF08239 Bacterial SH3 domain UGYR_07700 PF12627 Probable RNA and SrmB- binding site of polymerase A UGYR_07700 PF01743 Poly A polymerase head domain UGYR_07700 PF01966 HD domain UGYR_07705 PF02673 Bacitracin resistance protein BacA UGYR_07710 PF02152 Dihydroneopterin aldolase UGYR_07715 PF02660 Glycerol-3-phosphate acyltransferase UGYR_07720 PF00814 Glycoprotease family UGYR_07725 PF01165 Ribosomal protein S21 UGYR_07730 PF01807 CHC2 zinc finger UGYR_07730 PF08278 DNA primase DnaG DnaB-binding UGYR_07730 PF08275 DNA primase catalytic core, N-terminal domain UGYR_07730 PF10410 DnaB-helicase binding domain of primase UGYR_07735 PF04546 Sigma-70, non-essential region UGYR_07735 PF04539 Sigma-70 region 3 UGYR_07735 PF03979 Sigma-70 factor, region 1.1 UGYR_07735 PF04542 Sigma-70 region 2 UGYR_07735 PF04545 Sigma-70, region 4 UGYR_07735 PF00140 Sigma-70 factor, region 1.2 UGYR_07755 PF00106 short chain dehydrogenase UGYR_07785 PF04829 Pre-toxin domain with VENN motif UGYR_07785 PF05860 haemagglutination activity domain UGYR_07785 PF13332 Hemagglutinin repeat UGYR_07785 PF13018 Extended Signal Peptide of Type V secretion system UGYR_07815 PF01527 Transposase UGYR_07825 PF04829 Pre-toxin domain with VENN motif UGYR_07825 PF05860 haemagglutination activity domain UGYR_07825 PF13018 Extended Signal Peptide of Type V secretion system UGYR_07825 PF13332 Hemagglutinin repeat UGYR_07830 PF17287 POTRA domain UGYR_07830 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB UGYR_07830 PF08479 POTRA domain, ShlB-type UGYR_07835 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_07835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UGYR_07840 PF05175 Methyltransferase small domain UGYR_07850 PF01863 Protein of unknown function DUF45 UGYR_07855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UGYR_07860 PF03741 Integral membrane protein TerC family UGYR_07865 PF00375 Sodium:dicarboxylate symporter family UGYR_07875 PF08666 SAF domain UGYR_07875 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus UGYR_07880 PF08125 Mannitol dehydrogenase C-terminal domain UGYR_07880 PF01232 Mannitol dehydrogenase Rossmann domain UGYR_07885 PF02614 Glucuronate isomerase UGYR_07890 PF07690 Major Facilitator Superfamily UGYR_07895 PF07729 FCD domain UGYR_07895 PF00392 Bacterial regulatory proteins, gntR family UGYR_07905 PF09335 SNARE associated Golgi protein UGYR_07910 PF13721 SecD export protein N-terminal TM region UGYR_07920 PF05957 Bacterial protein of unknown function (DUF883) UGYR_07925 PF07332 Putative Actinobacterial Holin-X, holin superfamily III UGYR_07930 PF13997 YqjK-like protein UGYR_07935 PF07681 DoxX UGYR_07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_07940 PF03466 LysR substrate binding domain UGYR_07945 PF02678 Pirin UGYR_07945 PF17954 Quercetinase C-terminal cupin domain UGYR_07950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UGYR_07955 PF04348 LppC putative lipoprotein UGYR_07960 PF02021 Uncharacterised protein family UPF0102 UGYR_07965 PF13580 SIS domain UGYR_07970 PF04972 BON domain UGYR_07975 PF00912 Transglycosylase UGYR_07985 PF00989 PAS fold UGYR_07985 PF00072 Response regulator receiver domain UGYR_07985 PF01627 Hpt domain UGYR_07985 PF18415 Histidine kinase receptor ArcB trans-membrane domain UGYR_07985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_07985 PF00512 His Kinase A (phospho-acceptor) domain UGYR_07990 PF16199 Radical_SAM C-terminal domain UGYR_07990 PF04055 Radical SAM superfamily UGYR_07995 PF01493 GXGXG motif UGYR_07995 PF01645 Conserved region in glutamate synthase UGYR_07995 PF04898 Glutamate synthase central domain UGYR_07995 PF00310 Glutamine amidotransferases class-II UGYR_08000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster UGYR_08000 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_08010 PF04386 Stringent starvation protein B UGYR_08015 PF00043 Glutathione S-transferase, C-terminal domain UGYR_08015 PF02798 Glutathione S-transferase, N-terminal domain UGYR_08020 PF00380 Ribosomal protein S9/S16 UGYR_08025 PF00572 Ribosomal protein L13 UGYR_08030 PF03969 AFG1-like ATPase UGYR_08035 PF06295 Protein of unknown function (DUF1043) UGYR_08040 PF13180 PDZ domain UGYR_08040 PF00595 PDZ domain UGYR_08045 PF13180 PDZ domain UGYR_08050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UGYR_08055 PF01722 BolA-like protein UGYR_08060 PF13466 STAS domain UGYR_08065 PF05494 MlaC protein UGYR_08070 PF02470 MlaD protein UGYR_08075 PF02405 Permease MlaE UGYR_08080 PF00005 ABC transporter UGYR_08085 PF01699 Sodium/calcium exchanger protein UGYR_08090 PF01380 SIS domain UGYR_08090 PF00571 CBS domain UGYR_08100 PF06835 Lipopolysaccharide-assembly, LptC-related UGYR_08105 PF03968 OstA-like protein UGYR_08110 PF12399 Branched-chain amino acid ATP-binding cassette transporter UGYR_08110 PF00005 ABC transporter UGYR_08115 PF04963 Sigma-54 factor, core binding domain UGYR_08115 PF00309 Sigma-54 factor, Activator interacting domain (AID) UGYR_08115 PF04552 Sigma-54, DNA binding domain UGYR_08120 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein UGYR_08125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UGYR_08130 PF03668 P-loop ATPase protein family UGYR_08135 PF00381 PTS HPr component phosphorylation site UGYR_08140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UGYR_08140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UGYR_08145 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain UGYR_08145 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain UGYR_08150 PF01042 Endoribonuclease L-PSP UGYR_08155 PF11941 Domain of unknown function (DUF3459) UGYR_08155 PF00128 Alpha amylase, catalytic domain UGYR_08160 PF00367 phosphotransferase system, EIIB UGYR_08160 PF02378 Phosphotransferase system, EIIC UGYR_08165 PF00356 Bacterial regulatory proteins, lacI family UGYR_08170 PF00690 Cation transporter/ATPase, N-terminus UGYR_08170 PF00689 Cation transporting ATPase, C-terminus UGYR_08185 PF14760 Rnk N-terminus UGYR_08185 PF01272 Transcription elongation factor, GreA/GreB, C-term UGYR_08190 PF07361 Cytochrome b562 UGYR_08195 PF01523 Putative modulator of DNA gyrase UGYR_08200 PF04751 Protein of unknown function (DUF615) UGYR_08205 PF01337 Barstar (barnase inhibitor) UGYR_08210 PF00545 ribonuclease UGYR_08215 PF00171 Aldehyde dehydrogenase family UGYR_08220 PF04632 Fusaric acid resistance protein family UGYR_08225 PF13533 Biotin-lipoyl like UGYR_08230 PF07869 Protein of unknown function (DUF1656) UGYR_08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_08235 PF03466 LysR substrate binding domain UGYR_08240 PF01523 Putative modulator of DNA gyrase UGYR_08245 PF00795 Carbon-nitrogen hydrolase UGYR_08250 PF13502 AsmA-like C-terminal region UGYR_08250 PF13116 Protein of unknown function UGYR_08255 PF10150 Ribonuclease E/G family UGYR_08255 PF00575 S1 RNA binding domain UGYR_08260 PF02545 Maf-like protein UGYR_08265 PF04093 rod shape-determining protein MreD UGYR_08270 PF04085 rod shape-determining protein MreC UGYR_08280 PF17157 Gammaproteobacterial periplasmic sensor domain UGYR_08280 PF00563 EAL domain UGYR_08280 PF00990 Diguanylate cyclase, GGDEF domain UGYR_08285 PF00107 Zinc-binding dehydrogenase UGYR_08285 PF08240 Alcohol dehydrogenase GroES-like domain UGYR_08290 PF00174 Oxidoreductase molybdopterin binding domain UGYR_08295 PF01794 Ferric reductase like transmembrane component UGYR_08300 PF01220 Dehydroquinase class II UGYR_08305 PF00364 Biotin-requiring enzyme UGYR_08310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UGYR_08310 PF02785 Biotin carboxylase C-terminal domain UGYR_08310 PF00289 Biotin carboxylase, N-terminal domain UGYR_08315 PF06196 Protein of unknown function (DUF997) UGYR_08320 PF00474 Sodium:solute symporter family UGYR_08330 PF01207 Dihydrouridine synthase (Dus) UGYR_08335 PF02954 Bacterial regulatory protein, Fis family UGYR_08345 PF03279 Bacterial lipid A biosynthesis acyltransferase UGYR_08350 PF00484 Carbonic anhydrase UGYR_08355 PF04172 LrgB-like family UGYR_08360 PF03788 LrgA family UGYR_08365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_08365 PF03466 LysR substrate binding domain UGYR_08370 PF00999 Sodium/hydrogen exchanger family UGYR_08375 PF00860 Permease family UGYR_08385 PF00436 Single-strand binding protein family UGYR_08390 PF00005 ABC transporter UGYR_08390 PF17755 UvrA DNA-binding domain UGYR_08390 PF17760 UvrA interaction domain UGYR_08395 PF04237 YjbR UGYR_08400 PF00155 Aminotransferase class I and II UGYR_08405 PF01168 Alanine racemase, N-terminal domain UGYR_08405 PF00842 Alanine racemase, C-terminal domain UGYR_08410 PF03796 DnaB-like helicase C terminal domain UGYR_08410 PF00772 DnaB-like helicase N terminal domain UGYR_08415 PF00107 Zinc-binding dehydrogenase UGYR_08415 PF08240 Alcohol dehydrogenase GroES-like domain UGYR_08420 PF09583 Phage shock protein G (Phageshock_PspG) UGYR_08425 PF01207 Dihydrouridine synthase (Dus) UGYR_08430 PF01475 Ferric uptake regulator family UGYR_08435 PF01726 LexA DNA binding domain UGYR_08435 PF00717 Peptidase S24-like UGYR_08440 PF01219 Prokaryotic diacylglycerol kinase UGYR_08445 PF01553 Acyltransferase UGYR_08450 PF01040 UbiA prenyltransferase family UGYR_08455 PF04345 Chorismate lyase UGYR_08460 PF07148 Maltose operon periplasmic protein precursor (MalM) UGYR_08465 PF02264 LamB porin UGYR_08470 PF00005 ABC transporter UGYR_08470 PF17912 MalK OB fold domain UGYR_08480 PF01547 Bacterial extracellular solute-binding protein UGYR_08485 PF14785 Maltose transport system permease protein MalF P2 domain UGYR_08485 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_08490 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_08495 PF06146 Phosphate-starvation-inducible E UGYR_08500 PF00342 Phosphoglucose isomerase UGYR_08505 PF01842 ACT domain UGYR_08505 PF00696 Amino acid kinase family UGYR_08510 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB UGYR_08510 PF17287 POTRA domain UGYR_08510 PF08479 POTRA domain, ShlB-type UGYR_08515 PF05860 haemagglutination activity domain UGYR_08515 PF13332 Hemagglutinin repeat UGYR_08520 PF00872 Transposase, Mutator family UGYR_08535 PF04488 Glycosyltransferase sugar-binding region containing DXD motif UGYR_08545 PF00004 ATPase family associated with various cellular activities (AAA) UGYR_08545 PF16450 Proteasomal ATPase OB C-terminal domain UGYR_08545 PF17758 Proteasomal ATPase OB N-terminal domain UGYR_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_08620 PF03466 LysR substrate binding domain UGYR_08635 PF02574 Homocysteine S-methyltransferase UGYR_08635 PF00809 Pterin binding enzyme UGYR_08635 PF02310 B12 binding domain UGYR_08635 PF02965 Vitamin B12 dependent methionine synthase, activation domain UGYR_08635 PF02607 B12 binding domain UGYR_08640 PF01614 Bacterial transcriptional regulator UGYR_08640 PF09339 IclR helix-turn-helix domain UGYR_08645 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) UGYR_08650 PF00463 Isocitrate lyase family UGYR_08655 PF01274 Malate synthase UGYR_08660 PF04204 Homoserine O-succinyltransferase UGYR_08695 PF01808 AICARFT/IMPCHase bienzyme UGYR_08695 PF02142 MGS-like domain UGYR_08700 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain UGYR_08700 PF02843 Phosphoribosylglycinamide synthetase, C domain UGYR_08700 PF02844 Phosphoribosylglycinamide synthetase, N domain UGYR_08705 PF07356 Protein of unknown function (DUF1481) UGYR_08710 PF00216 Bacterial DNA-binding protein UGYR_08715 PF04222 Protein of unknown function (DUF416) UGYR_08720 PF04493 Endonuclease V UGYR_08725 PF01208 Uroporphyrinogen decarboxylase (URO-D) UGYR_08730 PF00293 NUDIX domain UGYR_08730 PF09297 NADH pyrophosphatase zinc ribbon domain UGYR_08735 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ UGYR_08740 PF13667 ThiC-associated domain UGYR_08740 PF01964 Radical SAM ThiC family UGYR_08745 PF02581 Thiamine monophosphate synthase UGYR_08750 PF00899 ThiF family UGYR_08755 PF02597 ThiS family UGYR_08760 PF05690 Thiazole biosynthesis protein ThiG UGYR_08765 PF06968 Biotin and Thiamin Synthesis associated domain UGYR_08765 PF04055 Radical SAM superfamily UGYR_08770 PF00623 RNA polymerase Rpb1, domain 2 UGYR_08770 PF05000 RNA polymerase Rpb1, domain 4 UGYR_08770 PF04998 RNA polymerase Rpb1, domain 5 UGYR_08770 PF04997 RNA polymerase Rpb1, domain 1 UGYR_08770 PF04983 RNA polymerase Rpb1, domain 3 UGYR_08775 PF04563 RNA polymerase beta subunit UGYR_08775 PF04560 RNA polymerase Rpb2, domain 7 UGYR_08775 PF04565 RNA polymerase Rpb2, domain 3 UGYR_08775 PF10385 RNA polymerase beta subunit external 1 domain UGYR_08775 PF00562 RNA polymerase Rpb2, domain 6 UGYR_08775 PF04561 RNA polymerase Rpb2, domain 2 UGYR_08780 PF16320 Ribosomal protein L7/L12 dimerisation domain UGYR_08780 PF00542 Ribosomal protein L7/L12 C-terminal domain UGYR_08785 PF00466 Ribosomal protein L10 UGYR_08790 PF00687 Ribosomal protein L1p/L10e family UGYR_08795 PF03946 Ribosomal protein L11, N-terminal domain UGYR_08795 PF00298 Ribosomal protein L11, RNA binding domain UGYR_08800 PF02357 Transcription termination factor nusG UGYR_08800 PF00467 KOW motif UGYR_08805 PF00584 SecE/Sec61-gamma subunits of protein translocation complex UGYR_08810 PF03144 Elongation factor Tu domain 2 UGYR_08810 PF03143 Elongation factor Tu C-terminal domain UGYR_08810 PF00009 Elongation factor Tu GTP binding domain UGYR_08835 PF00485 Phosphoribulokinase / Uridine kinase family UGYR_08840 PF02237 Biotin protein ligase C terminal domain UGYR_08840 PF08279 HTH domain UGYR_08840 PF03099 Biotin/lipoate A/B protein ligase family UGYR_08845 PF01565 FAD binding domain UGYR_08845 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain UGYR_08875 PF12724 Flavodoxin domain UGYR_08880 PF02386 Cation transport protein UGYR_08885 PF01205 Uncharacterized protein family UPF0029 UGYR_08885 PF09186 Domain of unknown function (DUF1949) UGYR_08890 PF00557 Metallopeptidase family M24 UGYR_08895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UGYR_08895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UGYR_08895 PF00378 Enoyl-CoA hydratase/isomerase UGYR_08900 PF00108 Thiolase, N-terminal domain UGYR_08900 PF02803 Thiolase, C-terminal domain UGYR_08905 PF00175 Oxidoreductase NAD-binding domain UGYR_08905 PF00970 Oxidoreductase FAD-binding domain UGYR_08910 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UGYR_08920 PF02357 Transcription termination factor nusG UGYR_08925 PF00490 Delta-aminolevulinic acid dehydratase UGYR_08930 PF01026 TatD related DNase UGYR_08935 PF00902 Sec-independent protein translocase protein (TatC) UGYR_08945 PF02416 mttA/Hcf106 family UGYR_08950 PF03109 ABC1 family UGYR_08955 PF02036 SCP-2 sterol transfer family UGYR_08960 PF01209 ubiE/COQ5 methyltransferase family UGYR_08965 PF02646 RmuC family UGYR_08970 PF09335 SNARE associated Golgi protein UGYR_08975 PF02554 Carbon starvation protein CstA UGYR_08975 PF13722 5TM C-terminal transporter carbon starvation CstA UGYR_08985 PF01048 Phosphorylase superfamily UGYR_08990 PF01738 Dienelactone hydrolase family UGYR_08995 PF01717 Cobalamin-independent synthase, Catalytic domain UGYR_08995 PF08267 Cobalamin-independent synthase, N-terminal domain UGYR_09000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_09000 PF03466 LysR substrate binding domain UGYR_09005 PF00892 EamA-like transporter family UGYR_09015 PF03009 Glycerophosphoryl diester phosphodiesterase family UGYR_09020 PF00005 ABC transporter UGYR_09020 PF17912 MalK OB fold domain UGYR_09025 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_09030 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_09035 PF13416 Bacterial extracellular solute-binding protein UGYR_09070 PF00005 ABC transporter UGYR_09075 PF00005 ABC transporter UGYR_09075 PF12399 Branched-chain amino acid ATP-binding cassette transporter UGYR_09080 PF02653 Branched-chain amino acid transport system / permease component UGYR_09080 PF11862 Domain of unknown function (DUF3382) UGYR_09085 PF02653 Branched-chain amino acid transport system / permease component UGYR_09090 PF13458 Periplasmic binding protein UGYR_09095 PF12568 Acetyltransferase (GNAT) domain, PanZ UGYR_09100 PF02595 Glycerate kinase family UGYR_09105 PF02447 GntP family permease UGYR_09110 PF05651 Putative sugar diacid recognition UGYR_09110 PF17853 GGDEF-like domain UGYR_09110 PF13556 PucR C-terminal helix-turn-helix domain UGYR_09115 PF00140 Sigma-70 factor, region 1.2 UGYR_09115 PF04542 Sigma-70 region 2 UGYR_09115 PF04545 Sigma-70, region 4 UGYR_09120 PF18075 FtsX extracellular domain UGYR_09120 PF02687 FtsX-like permease family UGYR_09125 PF00005 ABC transporter UGYR_09130 PF02881 SRP54-type protein, helical bundle domain UGYR_09130 PF00448 SRP54-type protein, GTPase domain UGYR_09130 PF02881 SRP54-type protein, helical bundle domain UGYR_09130 PF00448 SRP54-type protein, GTPase domain UGYR_09140 PF06611 Protein of unknown function (DUF1145) UGYR_09155 PF07947 YhhN family UGYR_09160 PF00403 Heavy-metal-associated domain UGYR_09165 PF01206 Sulfurtransferase TusA UGYR_09170 PF02592 Putative vitamin uptake transporter UGYR_09175 PF08786 DcrB UGYR_09180 PF02754 Cysteine-rich domain UGYR_09180 PF13183 4Fe-4S dicluster domain UGYR_09185 PF00890 FAD binding domain UGYR_09190 PF04324 BFD-like [2Fe-2S] binding domain UGYR_09190 PF01266 FAD dependent oxidoreductase UGYR_09200 PF07690 Major Facilitator Superfamily UGYR_09205 PF03009 Glycerophosphoryl diester phosphodiesterase family UGYR_09215 PF12146 Serine aminopeptidase, S33 UGYR_09220 PF01810 LysE type translocator UGYR_09225 PF09382 RQC domain UGYR_09225 PF00271 Helicase conserved C-terminal domain UGYR_09225 PF16124 RecQ zinc-binding UGYR_09225 PF00570 HRDC domain UGYR_09225 PF00270 DEAD/DEAH box helicase UGYR_09230 PF02253 Phospholipase A1 UGYR_09235 PF03061 Thioesterase superfamily UGYR_09240 PF00892 EamA-like transporter family UGYR_09245 PF01544 CorA-like Mg2+ transporter protein UGYR_09255 PF09370 Phosphoenolpyruvate hydrolase-like UGYR_09270 PF00580 UvrD/REP helicase N-terminal domain UGYR_09270 PF13361 UvrD-like helicase C-terminal domain UGYR_09275 PF13419 Haloacid dehalogenase-like hydrolase UGYR_09280 PF00589 Phage integrase family UGYR_09280 PF02899 Phage integrase, N-terminal SAM-like domain UGYR_09285 PF04340 Protein of unknown function, DUF484 UGYR_09290 PF01678 Diaminopimelate epimerase UGYR_09295 PF13627 Prokaryotic lipoprotein-attachment site UGYR_09300 PF01491 Frataxin-like domain UGYR_09305 PF01295 Adenylate cyclase, class-I UGYR_09305 PF12633 Adenylate cyclase NT domain UGYR_09310 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain UGYR_09310 PF03900 Porphobilinogen deaminase, C-terminal domain UGYR_09315 PF02602 Uroporphyrinogen-III synthase HemD UGYR_09320 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase UGYR_09325 PF07219 HemY protein N-terminus UGYR_09325 PF07719 Tetratricopeptide repeat UGYR_09355 PF00324 Amino acid permease UGYR_09360 PF03808 Glycosyl transferase WecB/TagA/CpsF family UGYR_09365 PF06899 WzyE protein, O-antigen assembly polymerase UGYR_09370 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 UGYR_09375 PF01943 Polysaccharide biosynthesis protein UGYR_09380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UGYR_09390 PF00483 Nucleotidyl transferase UGYR_09395 PF16363 GDP-mannose 4,6 dehydratase UGYR_09400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain UGYR_09400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UGYR_09400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UGYR_09405 PF02350 UDP-N-acetylglucosamine 2-epimerase UGYR_09410 PF02706 Chain length determinant protein UGYR_09415 PF00953 Glycosyl transferase family 4 UGYR_09420 PF07497 Rho termination factor, RNA-binding domain UGYR_09420 PF07498 Rho termination factor, N-terminal domain UGYR_09420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UGYR_09425 PF00085 Thioredoxin UGYR_09430 PF00271 Helicase conserved C-terminal domain UGYR_09430 PF00270 DEAD/DEAH box helicase UGYR_09435 PF02541 Ppx/GppA phosphatase family UGYR_09440 PF13361 UvrD-like helicase C-terminal domain UGYR_09440 PF00580 UvrD/REP helicase N-terminal domain UGYR_09450 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain UGYR_09450 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain UGYR_09455 PF03466 LysR substrate binding domain UGYR_09455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_09460 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading UGYR_09460 PF18416 N-acetylglucosamine binding protein domain 2 UGYR_09465 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_09465 PF00585 C-terminal regulatory domain of Threonine dehydratase UGYR_09470 PF00920 Dehydratase family UGYR_09475 PF01063 Amino-transferase class IV UGYR_09485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UGYR_09485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UGYR_09485 PF00205 Thiamine pyrophosphate enzyme, central domain UGYR_09490 PF13335 Magnesium chelatase, subunit ChlI C-terminal UGYR_09490 PF01078 Magnesium chelatase, subunit ChlI UGYR_09495 PF04219 Protein of unknown function, DUF UGYR_09500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_09500 PF03466 LysR substrate binding domain UGYR_09540 PF01177 Asp/Glu/Hydantoin racemase UGYR_09545 PF07715 TonB-dependent Receptor Plug Domain UGYR_09545 PF00593 TonB dependent receptor UGYR_09550 PF05958 tRNA (Uracil-5-)-methyltransferase UGYR_09555 PF07226 Protein of unknown function (DUF1422) UGYR_09560 PF00440 Bacterial regulatory proteins, tetR family UGYR_09565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UGYR_09565 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_09570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_09570 PF03466 LysR substrate binding domain UGYR_09575 PF00462 Glutaredoxin UGYR_09575 PF08534 Redoxin UGYR_09580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UGYR_09580 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_09600 PF00529 HlyD membrane-fusion protein of T1SS UGYR_09605 PF00664 ABC transporter transmembrane region UGYR_09605 PF00005 ABC transporter UGYR_09615 PF07715 TonB-dependent Receptor Plug Domain UGYR_09615 PF00593 TonB dependent receptor UGYR_09620 PF00206 Lyase UGYR_09620 PF14698 Argininosuccinate lyase C-terminal UGYR_09625 PF00764 Arginosuccinate synthase UGYR_09630 PF00696 Amino acid kinase family UGYR_09635 PF01118 Semialdehyde dehydrogenase, NAD binding domain UGYR_09635 PF02774 Semialdehyde dehydrogenase, dimerisation domain UGYR_09640 PF01546 Peptidase family M20/M25/M40 UGYR_09640 PF07687 Peptidase dimerisation domain UGYR_09645 PF00311 Phosphoenolpyruvate carboxylase UGYR_09655 PF02219 Methylenetetrahydrofolate reductase UGYR_09670 PF00696 Amino acid kinase family UGYR_09670 PF00742 Homoserine dehydrogenase UGYR_09670 PF03447 Homoserine dehydrogenase, NAD binding domain UGYR_09675 PF01053 Cys/Met metabolism PLP-dependent enzyme UGYR_09680 PF01340 Met Apo-repressor, MetJ UGYR_09685 PF01197 Ribosomal protein L31 UGYR_09690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain UGYR_09690 PF18074 Primosomal protein N C-terminal domain UGYR_09690 PF17764 3′ DNA-binding domain (3′BD) UGYR_09690 PF00271 Helicase conserved C-terminal domain UGYR_09690 PF00270 DEAD/DEAH box helicase UGYR_09695 PF00356 Bacterial regulatory proteins, lacI family UGYR_09700 PF05036 Sporulation related domain UGYR_09705 PF00227 Proteasome subunit UGYR_09710 PF07724 AAA domain (Cdc48 subfamily) UGYR_09710 PF10431 C-terminal, D2-small domain, of ClpB protein UGYR_09710 PF00004 ATPase family associated with various cellular activities (AAA) UGYR_09715 PF01040 UbiA prenyltransferase family UGYR_09720 PF03737 Aldolase/RraA UGYR_09725 PF06005 Cell division protein ZapB UGYR_09730 PF00230 Major intrinsic protein UGYR_09735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UGYR_09735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UGYR_09740 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded UGYR_09745 PF07690 Major Facilitator Superfamily UGYR_09750 PF00175 Oxidoreductase NAD-binding domain UGYR_09750 PF00970 Oxidoreductase FAD-binding domain UGYR_09755 PF05656 Protein of unknown function (DUF805) UGYR_09760 PF07305 Protein of unknown function (DUF1454) UGYR_09765 PF00121 Triosephosphate isomerase UGYR_09775 PF00365 Phosphofructokinase UGYR_09780 PF16916 Dimerisation domain of Zinc Transporter UGYR_09780 PF01545 Cation efflux family UGYR_09785 PF07813 LTXXQ motif family protein UGYR_09790 PF00072 Response regulator receiver domain UGYR_09790 PF00486 Transcriptional regulatory protein, C terminal UGYR_09795 PF00512 His Kinase A (phospho-acceptor) domain UGYR_09795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_09795 PF00672 HAMP domain UGYR_09795 PF16527 Two-component sensor protein CpxA, periplasmic domain UGYR_09800 PF00588 SpoU rRNA Methylase family UGYR_09805 PF06426 Serine acetyltransferase, N-terminal UGYR_09805 PF00132 Bacterial transferase hexapeptide (six repeats) UGYR_09810 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus UGYR_09810 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UGYR_09815 PF02556 Preprotein translocase subunit SecB UGYR_09820 PF00462 Glutaredoxin UGYR_09825 PF00581 Rhodanese-like domain UGYR_09830 PF01676 Metalloenzyme superfamily UGYR_09830 PF06415 BPG-independent PGAM N-terminus (iPGM_N) UGYR_09835 PF01551 Peptidase family M23 UGYR_09840 PF04748 Divergent polysaccharide deacetylase UGYR_09845 PF08240 Alcohol dehydrogenase GroES-like domain UGYR_09845 PF00107 Zinc-binding dehydrogenase UGYR_09850 PF00155 Aminotransferase class I and II UGYR_09855 PF01370 NAD dependent epimerase/dehydratase family UGYR_09860 PF01075 Glycosyltransferase family 9 (heptosyltransferase) UGYR_09865 PF01075 Glycosyltransferase family 9 (heptosyltransferase) UGYR_09870 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) UGYR_09875 PF00535 Glycosyl transferase family 2 UGYR_09880 PF01467 Cytidylyltransferase-like UGYR_09885 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain UGYR_09885 PF06827 Zinc finger found in FPG and IleRS UGYR_09885 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain UGYR_09890 PF00471 Ribosomal protein L33 UGYR_09895 PF00830 Ribosomal L28 family UGYR_09900 PF04002 RadC-like JAB domain UGYR_09905 PF04127 DNA / pantothenate metabolism flavoprotein UGYR_09905 PF02441 Flavoprotein UGYR_09910 PF00692 dUTPase UGYR_09915 PF00440 Bacterial regulatory proteins, tetR family UGYR_09920 PF00156 Phosphoribosyl transferase domain UGYR_09925 PF01138 3' exoribonuclease family, domain 1 UGYR_09925 PF03725 3' exoribonuclease family, domain 2 UGYR_09930 PF03755 YicC-like family, N-terminal region UGYR_09930 PF08340 Domain of unknown function (DUF1732) UGYR_09940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_09940 PF03466 LysR substrate binding domain UGYR_09945 PF00563 EAL domain UGYR_09945 PF13426 PAS domain UGYR_09945 PF00990 Diguanylate cyclase, GGDEF domain UGYR_09955 PF01527 Transposase UGYR_09965 PF00378 Enoyl-CoA hydratase/isomerase UGYR_09970 PF07670 Nucleoside recognition UGYR_09970 PF01773 Na+ dependent nucleoside transporter N-terminus UGYR_09970 PF07662 Na+ dependent nucleoside transporter C-terminus UGYR_09980 PF03458 UPF0126 domain UGYR_09985 PF01653 NAD-dependent DNA ligase adenylation domain UGYR_09985 PF03120 NAD-dependent DNA ligase OB-fold domain UGYR_09990 PF00625 Guanylate kinase UGYR_09995 PF01192 RNA polymerase Rpb6 UGYR_10000 PF13291 ACT domain UGYR_10000 PF04607 Region found in RelA / SpoT proteins UGYR_10000 PF02824 TGS domain UGYR_10005 PF00588 SpoU rRNA Methylase family UGYR_10005 PF12105 SpoU, rRNA methylase, C-terminal UGYR_10010 PF00270 DEAD/DEAH box helicase UGYR_10010 PF17191 RecG wedge domain UGYR_10010 PF00271 Helicase conserved C-terminal domain UGYR_10015 PF03616 Sodium/glutamate symporter UGYR_10020 PF00860 Permease family UGYR_10025 PF05170 AsmA family UGYR_10030 PF00583 Acetyltransferase (GNAT) family UGYR_10030 PF09500 Putative thioesterase (yiiD_Cterm) UGYR_10035 PF02580 D-Tyr-tRNA(Tyr) deacylase UGYR_10040 PF03631 Virulence factor BrkB UGYR_10045 PF13419 Haloacid dehalogenase-like hydrolase UGYR_10055 PF00120 Glutamine synthetase, catalytic domain UGYR_10055 PF03951 Glutamine synthetase, beta-Grasp domain UGYR_10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_10060 PF00512 His Kinase A (phospho-acceptor) domain UGYR_10060 PF00989 PAS fold UGYR_10065 PF00158 Sigma-54 interaction domain UGYR_10065 PF02954 Bacterial regulatory protein, Fis family UGYR_10065 PF00072 Response regulator receiver domain UGYR_10070 PF06969 HemN C-terminal domain UGYR_10070 PF04055 Radical SAM superfamily UGYR_10075 PF04220 Der GTPase activator (YihI) UGYR_10080 PF01926 50S ribosome-binding GTPase UGYR_10085 PF01612 3'-5' exonuclease UGYR_10085 PF00476 DNA polymerase family A UGYR_10085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain UGYR_10085 PF01367 5'-3' exonuclease, C-terminal SAM fold UGYR_10090 PF01323 DSBA-like thioredoxin domain UGYR_10095 PF01636 Phosphotransferase enzyme family UGYR_10100 PF06288 Protein of unknown function (DUF1040) UGYR_10105 PF12804 MobA-like NTP transferase domain UGYR_10110 PF03205 Molybdopterin guanine dinucleotide synthesis protein B UGYR_10135 PF00392 Bacterial regulatory proteins, gntR family UGYR_10135 PF07729 FCD domain UGYR_10140 PF00356 Bacterial regulatory proteins, lacI family UGYR_10145 PF00294 pfkB family carbohydrate kinase UGYR_10150 PF13407 Periplasmic binding protein domain UGYR_10155 PF02653 Branched-chain amino acid transport system / permease component UGYR_10160 PF00005 ABC transporter UGYR_10165 PF05025 RbsD / FucU transport protein family UGYR_10170 PF02705 K+ potassium transporter UGYR_10175 PF17868 AAA lid domain UGYR_10175 PF12592 Protein of unknown function (DUF3763) UGYR_10175 PF07728 AAA domain (dynein-related subfamily) UGYR_10180 PF05762 VWA domain containing CoxE-like protein UGYR_10190 PF03590 Aspartate-ammonia ligase UGYR_10195 PF01037 Lrp/AsnC ligand binding domain UGYR_10200 PF00258 Flavodoxin UGYR_10205 PF01134 Glucose inhibited division protein A UGYR_10205 PF13932 GidA associated domain UGYR_10210 PF02527 rRNA small subunit methyltransferase G UGYR_10215 PF03899 ATP synthase I chain UGYR_10220 PF00119 ATP synthase A chain UGYR_10225 PF00137 ATP synthase subunit C UGYR_10230 PF00430 ATP synthase B/B' CF(0) UGYR_10235 PF00213 ATP synthase delta (OSCP) subunit UGYR_10240 PF02874 ATP synthase alpha/beta family, beta-barrel domain UGYR_10240 PF00306 ATP synthase alpha/beta chain, C terminal domain UGYR_10240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UGYR_10245 PF00231 ATP synthase UGYR_10250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UGYR_10250 PF02874 ATP synthase alpha/beta family, beta-barrel domain UGYR_10255 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain UGYR_10255 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain UGYR_10260 PF00132 Bacterial transferase hexapeptide (six repeats) UGYR_10260 PF12804 MobA-like NTP transferase domain UGYR_10265 PF01380 SIS domain UGYR_10270 PF12849 PBP superfamily domain UGYR_10275 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_10280 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_10285 PF00005 ABC transporter UGYR_10290 PF01895 PhoU domain UGYR_10295 PF00497 Bacterial extracellular solute-binding proteins, family 3 UGYR_10300 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_10305 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_10310 PF00860 Permease family UGYR_10315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UGYR_10315 PF02203 Tar ligand binding domain homologue UGYR_10315 PF00672 HAMP domain UGYR_10325 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_10325 PF02753 Pili assembly chaperone PapD, C-terminal domain UGYR_10330 PF00577 Outer membrane usher protein UGYR_10330 PF13954 PapC N-terminal domain UGYR_10330 PF13953 PapC C-terminal domain UGYR_10340 PF10396 GTP-binding protein TrmE N-terminus UGYR_10340 PF12631 MnmE helical domain UGYR_10340 PF01926 50S ribosome-binding GTPase UGYR_10345 PF02096 60Kd inner membrane protein UGYR_10345 PF14849 YidC periplasmic domain UGYR_10350 PF01809 Putative membrane protein insertion efficiency factor UGYR_10355 PF00825 Ribonuclease P UGYR_10360 PF00468 Ribosomal protein L34 UGYR_10365 PF11638 DnaA N-terminal domain UGYR_10365 PF08299 Bacterial dnaA protein helix-turn-helix UGYR_10365 PF00308 Bacterial dnaA protein UGYR_10370 PF02767 DNA polymerase III beta subunit, central domain UGYR_10370 PF00712 DNA polymerase III beta subunit, N-terminal domain UGYR_10370 PF02768 DNA polymerase III beta subunit, C-terminal domain UGYR_10375 PF02463 RecF/RecN/SMC N terminal domain UGYR_10380 PF18053 DNA gyrase B subunit insert domain UGYR_10380 PF01751 Toprim domain UGYR_10380 PF00204 DNA gyrase B UGYR_10380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_10380 PF00986 DNA gyrase B subunit, carboxyl terminus UGYR_10390 PF07676 WD40-like Beta Propeller Repeat UGYR_10390 PF12566 Protein of unknown function (DUF3748) UGYR_10395 PF07119 Protein of unknown function (DUF1375) UGYR_10400 PF00011 Hsp20/alpha crystallin family UGYR_10405 PF00011 Hsp20/alpha crystallin family UGYR_10410 PF02080 TrkA-C domain UGYR_10410 PF06826 Predicted Permease Membrane Region UGYR_10415 PF00155 Aminotransferase class I and II UGYR_10420 PF00691 OmpA family UGYR_10420 PF13488 Glycine zipper UGYR_10440 PF03352 Methyladenine glycosylase UGYR_10450 PF02091 Glycyl-tRNA synthetase alpha subunit UGYR_10455 PF05746 DALR anticodon binding domain UGYR_10455 PF02092 Glycyl-tRNA synthetase beta subunit UGYR_10460 PF11254 Protein of unknown function (DUF3053) UGYR_10490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UGYR_10490 PF02378 Phosphotransferase system, EIIC UGYR_10490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UGYR_10495 PF01232 Mannitol dehydrogenase Rossmann domain UGYR_10495 PF08125 Mannitol dehydrogenase C-terminal domain UGYR_10500 PF05068 Mannitol repressor UGYR_10505 PF10928 Protein of unknown function (DUF2810) UGYR_10510 PF03475 3-alpha domain UGYR_10510 PF03473 MOSC domain UGYR_10515 PF02203 Tar ligand binding domain homologue UGYR_10515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UGYR_10515 PF00672 HAMP domain UGYR_10520 PF02777 Iron/manganese superoxide dismutases, C-terminal domain UGYR_10520 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain UGYR_10525 PF02634 FdhD/NarQ family UGYR_10530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UGYR_10530 PF00384 Molybdopterin oxidoreductase UGYR_10530 PF01568 Molydopterin dinucleotide binding domain UGYR_10535 PF00384 Molybdopterin oxidoreductase UGYR_10535 PF01568 Molydopterin dinucleotide binding domain UGYR_10535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UGYR_10540 PF09163 Formate dehydrogenase N, transmembrane UGYR_10540 PF13247 4Fe-4S dicluster domain UGYR_10545 PF01292 Prokaryotic cytochrome b561 UGYR_10550 PF04216 Protein involved in formate dehydrogenase formation UGYR_10555 PF03841 L-seryl-tRNA selenium transferase UGYR_10555 PF12390 Selenocysteine synthase N terminal UGYR_10560 PF09106 Elongation factor SelB, winged helix UGYR_10560 PF09107 Elongation factor SelB, winged helix UGYR_10560 PF03144 Elongation factor Tu domain 2 UGYR_10560 PF00009 Elongation factor Tu GTP binding domain UGYR_10565 PF01427 D-ala-D-ala dipeptidase UGYR_10570 PF07690 Major Facilitator Superfamily UGYR_10575 PF01757 Acyltransferase family UGYR_10580 PF13333 Integrase core domain UGYR_10580 PF00665 Integrase core domain UGYR_10580 PF13276 HTH-like domain UGYR_10605 PF01175 Urocanase Rossmann-like domain UGYR_10605 PF17392 Urocanase C-terminal domain UGYR_10605 PF17391 Urocanase N-terminal domain UGYR_10610 PF00221 Aromatic amino acid lyase UGYR_10615 PF00324 Amino acid permease UGYR_10625 PF12146 Serine aminopeptidase, S33 UGYR_10630 PF00884 Sulfatase UGYR_10630 PF08019 Phosphoethanolamine transferase EptA/EptB UGYR_10635 PF00072 Response regulator receiver domain UGYR_10635 PF00196 Bacterial regulatory proteins, luxR family UGYR_10640 PF05231 MASE1 UGYR_10640 PF07730 Histidine kinase UGYR_10640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_10645 PF07690 Major Facilitator Superfamily UGYR_10655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UGYR_10660 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_10665 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_10665 PF12911 N-terminal TM domain of oligopeptide transport permease C UGYR_10670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UGYR_10670 PF00005 ABC transporter UGYR_10675 PF00005 ABC transporter UGYR_10675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UGYR_10680 PF11658 Cellulose biosynthesis protein BcsG UGYR_10685 PF11120 Cellulose biosynthesis protein BcsF UGYR_10690 PF10995 Cellulose biosynthesis GIL UGYR_10700 PF06564 Cellulose biosynthesis protein BcsQ UGYR_10705 PF00535 Glycosyl transferase family 2 UGYR_10705 PF03552 Cellulose synthase UGYR_10705 PF07238 PilZ domain UGYR_10710 PF03170 Bacterial cellulose synthase subunit UGYR_10715 PF01270 Glycosyl hydrolases family 8 UGYR_10720 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) UGYR_10725 PF00563 EAL domain UGYR_10725 PF00990 Diguanylate cyclase, GGDEF domain UGYR_10725 PF17154 Gammaproteobacterial periplasmic sensor domain UGYR_10725 PF00672 HAMP domain UGYR_10730 PF00375 Sodium:dicarboxylate symporter family UGYR_10735 PF00675 Insulinase (Peptidase family M16) UGYR_10735 PF05193 Peptidase M16 inactive domain UGYR_10740 PF00294 pfkB family carbohydrate kinase UGYR_10745 PF01361 Tautomerase enzyme UGYR_10750 PF00563 EAL domain UGYR_10755 PF02611 CDP-diacylglycerol pyrophosphatase UGYR_10760 PF03631 Virulence factor BrkB UGYR_10765 PF03466 LysR substrate binding domain UGYR_10765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_10770 PF00375 Sodium:dicarboxylate symporter family UGYR_10775 PF01053 Cys/Met metabolism PLP-dependent enzyme UGYR_10780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UGYR_10780 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_10785 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ UGYR_10790 PF01432 Peptidase family M3 UGYR_10795 PF04445 Putative SAM-dependent methyltransferase UGYR_10800 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UGYR_10800 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UGYR_10805 PF00582 Universal stress protein family UGYR_10810 PF10625 Universal stress protein B (UspB) UGYR_10815 PF01384 Phosphate transporter family UGYR_10825 PF01810 LysE type translocator UGYR_10830 PF00583 Acetyltransferase (GNAT) family UGYR_10835 PF17954 Quercetinase C-terminal cupin domain UGYR_10835 PF02678 Pirin UGYR_10840 PF00356 Bacterial regulatory proteins, lacI family UGYR_10840 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family UGYR_10845 PF02447 GntP family permease UGYR_10850 PF01202 Shikimate kinase UGYR_10855 PF01914 MarC family integral membrane protein UGYR_10860 PF01118 Semialdehyde dehydrogenase, NAD binding domain UGYR_10860 PF02774 Semialdehyde dehydrogenase, dimerisation domain UGYR_10865 PF07694 5TMR of 5TMR-LYT UGYR_10865 PF06580 Histidine kinase UGYR_10870 PF00128 Alpha amylase, catalytic domain UGYR_10870 PF02806 Alpha amylase, C-terminal all-beta domain UGYR_10870 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) UGYR_10875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) UGYR_10875 PF00128 Alpha amylase, catalytic domain UGYR_10875 PF18390 Glycogen debranching enzyme C-terminal domain UGYR_10880 PF00483 Nucleotidyl transferase UGYR_10885 PF00534 Glycosyl transferases group 1 UGYR_10885 PF08323 Starch synthase catalytic domain UGYR_10890 PF00343 Carbohydrate phosphorylase UGYR_10895 PF01266 FAD dependent oxidoreductase UGYR_10895 PF16901 C-terminal domain of alpha-glycerophosphate oxidase UGYR_10900 PF00455 DeoR C terminal sensor domain UGYR_10900 PF08220 DeoR-like helix-turn-helix domain UGYR_10905 PF01694 Rhomboid family UGYR_10905 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease UGYR_10910 PF00581 Rhodanese-like domain UGYR_10915 PF00196 Bacterial regulatory proteins, luxR family UGYR_10915 PF17874 MalT-like TPR region UGYR_10920 PF00343 Carbohydrate phosphorylase UGYR_10925 PF02446 4-alpha-glucanotransferase UGYR_10930 PF01106 NifU-like domain UGYR_10930 PF01521 Iron-sulphur cluster biosynthesis UGYR_10935 PF00156 Phosphoribosyl transferase domain UGYR_10940 PF00561 alpha/beta hydrolase fold UGYR_10950 PF09012 FeoC like transcriptional regulator UGYR_10955 PF02421 Ferrous iron transport protein B UGYR_10955 PF07670 Nucleoside recognition UGYR_10955 PF07664 Ferrous iron transport protein B C terminus UGYR_10955 PF17910 FeoB cytosolic helical domain UGYR_10960 PF04023 FeoA domain UGYR_10965 PF16921 Tex protein YqgF-like domain UGYR_10965 PF09371 Tex-like protein N-terminal domain UGYR_10965 PF00575 S1 RNA binding domain UGYR_10965 PF17674 HHH domain UGYR_10990 PF01272 Transcription elongation factor, GreA/GreB, C-term UGYR_10990 PF03449 Transcription elongation factor, N-terminal UGYR_10995 PF00072 Response regulator receiver domain UGYR_10995 PF00486 Transcriptional regulatory protein, C terminal UGYR_11000 PF00512 His Kinase A (phospho-acceptor) domain UGYR_11000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_11000 PF00672 HAMP domain UGYR_11005 PF01293 Phosphoenolpyruvate carboxykinase UGYR_11010 PF01430 Hsp33 protein UGYR_11015 PF01479 S4 domain UGYR_11020 PF13419 Haloacid dehalogenase-like hydrolase UGYR_11025 PF07095 Intracellular growth attenuator protein IgaA UGYR_11030 PF00293 NUDIX domain UGYR_11035 PF00905 Penicillin binding protein transpeptidase domain UGYR_11035 PF00912 Transglycosylase UGYR_11035 PF17092 Penicillin-binding protein OB-like domain UGYR_11060 PF00263 Bacterial type II and III secretion system protein UGYR_11060 PF03958 Bacterial type II/III secretion system short domain UGYR_11065 PF01202 Shikimate kinase UGYR_11070 PF01761 3-dehydroquinate synthase UGYR_11075 PF05036 Sporulation related domain UGYR_11080 PF02086 D12 class N6 adenine-specific DNA methyltransferase UGYR_11085 PF00834 Ribulose-phosphate 3 epimerase family UGYR_11090 PF13419 Haloacid dehalogenase-like hydrolase UGYR_11095 PF00579 tRNA synthetases class I (W and Y) UGYR_11100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UGYR_11100 PF14824 Sirohaem biosynthesis protein central UGYR_11100 PF10414 Sirohaem synthase dimerisation region UGYR_11105 PF01226 Formate/nitrite transporter UGYR_11110 PF13806 Rieske-like [2Fe-2S] domain UGYR_11115 PF04324 BFD-like [2Fe-2S] binding domain UGYR_11115 PF18267 Rubredoxin NAD+ reductase C-terminal domain UGYR_11115 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_11115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain UGYR_11115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain UGYR_11120 PF07969 Amidohydrolase family UGYR_11125 PF07690 Major Facilitator Superfamily UGYR_11140 PF00356 Bacterial regulatory proteins, lacI family UGYR_11145 PF11975 Family 4 glycosyl hydrolase C-terminal domain UGYR_11145 PF02056 Family 4 glycosyl hydrolase UGYR_11155 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UGYR_11160 PF00117 Glutamine amidotransferase class-I UGYR_11165 PF00202 Aminotransferase class-III UGYR_11170 PF12805 FUSC-like inner membrane protein yccS UGYR_11175 PF00027 Cyclic nucleotide-binding domain UGYR_11175 PF13545 Crp-like helix-turn-helix domain UGYR_11180 PF02566 OsmC-like protein UGYR_11200 PF00156 Phosphoribosyl transferase domain UGYR_11205 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_11210 PF00485 Phosphoribulokinase / Uridine kinase family UGYR_11215 PF06794 Uncharacterised protein family (UPF0270) UGYR_11220 PF00561 alpha/beta hydrolase fold UGYR_11225 PF01810 LysE type translocator UGYR_11230 PF01075 Glycosyltransferase family 9 (heptosyltransferase) UGYR_11235 PF00535 Glycosyl transferase family 2 UGYR_11240 PF12848 ABC transporter UGYR_11240 PF00005 ABC transporter UGYR_11245 PF02525 Flavodoxin-like fold UGYR_11250 PF00999 Sodium/hydrogen exchanger family UGYR_11250 PF02254 TrkA-N domain UGYR_11255 PF09526 Probable metal-binding protein (DUF2387) UGYR_11260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UGYR_11265 PF04102 SlyX UGYR_11270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase UGYR_11270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UGYR_11275 PF13309 HTH domain UGYR_11275 PF08348 YheO-like PAS domain UGYR_11280 PF02635 DsrE/DsrF-like family UGYR_11285 PF02635 DsrE/DsrF-like family UGYR_11290 PF04077 DsrH like protein UGYR_11295 PF00164 Ribosomal protein S12/S23 UGYR_11300 PF00177 Ribosomal protein S7p/S5e UGYR_11305 PF03144 Elongation factor Tu domain 2 UGYR_11305 PF00009 Elongation factor Tu GTP binding domain UGYR_11305 PF03764 Elongation factor G, domain IV UGYR_11305 PF14492 Elongation Factor G, domain II UGYR_11305 PF00679 Elongation factor G C-terminus UGYR_11310 PF03143 Elongation factor Tu C-terminal domain UGYR_11310 PF03144 Elongation factor Tu domain 2 UGYR_11310 PF00009 Elongation factor Tu GTP binding domain UGYR_11315 PF00210 Ferritin-like domain UGYR_11320 PF00338 Ribosomal protein S10p/S20e UGYR_11325 PF00297 Ribosomal protein L3 UGYR_11330 PF00573 Ribosomal protein L4/L1 family UGYR_11335 PF00276 Ribosomal protein L23 UGYR_11340 PF03947 Ribosomal Proteins L2, C-terminal domain UGYR_11340 PF00181 Ribosomal Proteins L2, RNA binding domain UGYR_11345 PF00203 Ribosomal protein S19 UGYR_11350 PF00237 Ribosomal protein L22p/L17e UGYR_11355 PF07650 KH domain UGYR_11355 PF00189 Ribosomal protein S3, C-terminal domain UGYR_11360 PF00252 Ribosomal protein L16p/L10e UGYR_11365 PF00831 Ribosomal L29 protein UGYR_11370 PF00366 Ribosomal protein S17 UGYR_11375 PF00238 Ribosomal protein L14p/L23e UGYR_11380 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 UGYR_11380 PF00467 KOW motif UGYR_11385 PF00673 ribosomal L5P family C-terminus UGYR_11385 PF00281 Ribosomal protein L5 UGYR_11390 PF00253 Ribosomal protein S14p/S29e UGYR_11395 PF00410 Ribosomal protein S8 UGYR_11400 PF00347 Ribosomal protein L6 UGYR_11405 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast UGYR_11410 PF03719 Ribosomal protein S5, C-terminal domain UGYR_11410 PF00333 Ribosomal protein S5, N-terminal domain UGYR_11415 PF00327 Ribosomal protein L30p/L7e UGYR_11420 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A UGYR_11425 PF00344 SecY translocase UGYR_11430 PF00444 Ribosomal protein L36 UGYR_11435 PF00416 Ribosomal protein S13/S18 UGYR_11440 PF00411 Ribosomal protein S11 UGYR_11445 PF00163 Ribosomal protein S4/S9 N-terminal domain UGYR_11445 PF01479 S4 domain UGYR_11450 PF01000 RNA polymerase Rpb3/RpoA insert domain UGYR_11450 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain UGYR_11450 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain UGYR_11455 PF01196 Ribosomal protein L17 UGYR_11460 PF13411 MerR HTH family regulatory protein UGYR_11465 PF03889 Alternative ribosome-rescue factor A UGYR_11470 PF01741 Large-conductance mechanosensitive channel, MscL UGYR_11475 PF02080 TrkA-C domain UGYR_11475 PF02254 TrkA-N domain UGYR_11480 PF01189 16S rRNA methyltransferase RsmB/F UGYR_11480 PF01029 NusB family UGYR_11485 PF00551 Formyl transferase UGYR_11485 PF02911 Formyl transferase, C-terminal domain UGYR_11490 PF01327 Polypeptide deformylase UGYR_11495 PF02481 DNA recombination-mediator protein A UGYR_11495 PF17782 DprA winged helix domain UGYR_11500 PF04361 Protein of unknown function (DUF494) UGYR_11505 PF01300 Telomere recombination UGYR_11510 PF18317 Shikimate 5'-dehydrogenase C-terminal domain UGYR_11510 PF08501 Shikimate dehydrogenase substrate binding domain UGYR_11510 PF01488 Shikimate / quinate 5-dehydrogenase UGYR_11515 PF00132 Bacterial transferase hexapeptide (six repeats) UGYR_11545 PF00474 Sodium:solute symporter family UGYR_11550 PF04341 Protein of unknown function, DUF485 UGYR_11555 PF00501 AMP-binding enzyme UGYR_11555 PF13193 AMP-binding enzyme C-terminal domain UGYR_11555 PF16177 Acetyl-coenzyme A synthetase N-terminus UGYR_11560 PF00375 Sodium:dicarboxylate symporter family UGYR_11575 PF02683 Cytochrome C biogenesis protein transmembrane region UGYR_11575 PF11412 Disulphide bond corrector protein DsbC UGYR_11580 PF03091 CutA1 divalent ion tolerance protein UGYR_11585 PF03605 Anaerobic c4-dicarboxylate membrane transporter UGYR_11590 PF10415 Fumarase C C-terminus UGYR_11590 PF00206 Lyase UGYR_11595 PF04186 FxsA cytoplasmic membrane protein UGYR_11600 PF00166 Chaperonin 10 Kd subunit UGYR_11605 PF00118 TCP-1/cpn60 chaperonin family UGYR_11610 PF13698 Domain of unknown function (DUF4156) UGYR_11615 PF04055 Radical SAM superfamily UGYR_11620 PF08207 Elongation factor P (EF-P) KOW-like domain UGYR_11620 PF09285 Elongation factor P, C-terminal UGYR_11620 PF01132 Elongation factor P (EF-P) OB domain UGYR_11625 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading UGYR_11625 PF18416 N-acetylglucosamine binding protein domain 2 UGYR_11630 PF00196 Bacterial regulatory proteins, luxR family UGYR_11640 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_11640 PF02753 Pili assembly chaperone PapD, C-terminal domain UGYR_11645 PF13954 PapC N-terminal domain UGYR_11645 PF00577 Outer membrane usher protein UGYR_11645 PF13953 PapC C-terminal domain UGYR_11650 PF00419 Fimbrial protein UGYR_11655 PF00893 Small Multidrug Resistance protein UGYR_11660 PF08212 Lipocalin-like domain UGYR_11665 PF02313 Fumarate reductase subunit D UGYR_11670 PF02300 Fumarate reductase subunit C UGYR_11675 PF13183 4Fe-4S dicluster domain UGYR_11675 PF13085 2Fe-2S iron-sulfur cluster binding domain UGYR_11680 PF02910 Fumarate reductase flavoprotein C-term UGYR_11680 PF00890 FAD binding domain UGYR_11685 PF00152 tRNA synthetases class II (D, K and N) UGYR_11690 PF12795 Mechanosensitive ion channel porin domain UGYR_11690 PF12794 Mechanosensitive ion channel inner membrane domain 1 UGYR_11690 PF00924 Mechanosensitive ion channel UGYR_11695 PF02666 Phosphatidylserine decarboxylase UGYR_11700 PF03193 RsgA GTPase UGYR_11705 PF00929 Exonuclease UGYR_11725 PF08331 Domain of unknown function (DUF1730) UGYR_11730 PF01256 Carbohydrate kinase UGYR_11730 PF03853 YjeF-related protein N-terminus UGYR_11735 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE UGYR_11740 PF01520 N-acetylmuramoyl-L-alanine amidase UGYR_11745 PF01119 DNA mismatch repair protein, C-terminal domain UGYR_11745 PF08676 MutL C terminal dimerisation domain UGYR_11755 PF17209 Hfq protein UGYR_11760 PF16360 GTP-binding GTPase Middle Region UGYR_11760 PF01926 50S ribosome-binding GTPase UGYR_11760 PF13167 GTP-binding GTPase N-terminal UGYR_11765 PF01145 SPFH domain / Band 7 family UGYR_11765 PF12221 Bacterial membrane protein N terminal UGYR_11770 PF01145 SPFH domain / Band 7 family UGYR_11775 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) UGYR_11780 PF00709 Adenylosuccinate synthetase UGYR_11785 PF02082 Transcriptional regulator UGYR_11790 PF08461 Ribonuclease R winged-helix domain UGYR_11790 PF17876 Cold shock domain UGYR_11790 PF08206 Ribonuclease B OB domain UGYR_11790 PF00575 S1 RNA binding domain UGYR_11790 PF00773 RNB domain UGYR_11795 PF00588 SpoU rRNA Methylase family UGYR_11795 PF08032 RNA 2'-O ribose methyltransferase substrate binding UGYR_11815 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_11820 PF13954 PapC N-terminal domain UGYR_11820 PF00577 Outer membrane usher protein UGYR_11820 PF13953 PapC C-terminal domain UGYR_11840 PF00326 Prolyl oligopeptidase family UGYR_11850 PF01250 Ribosomal protein S6 UGYR_11855 PF00436 Single-strand binding protein family UGYR_11860 PF01084 Ribosomal protein S18 UGYR_11865 PF01281 Ribosomal protein L9, N-terminal domain UGYR_11865 PF03948 Ribosomal protein L9, C-terminal domain UGYR_11870 PF04225 Opacity-associated protein A LysM-like domain UGYR_11870 PF08525 Opacity-associated protein A N-terminal motif UGYR_11875 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase UGYR_11875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UGYR_11880 PF04405 Domain of Unknown function (DUF542) UGYR_11880 PF01814 Hemerythrin HHE cation binding domain UGYR_11885 PF00149 Calcineurin-like phosphoesterase UGYR_11885 PF02872 5'-nucleotidase, C-terminal domain UGYR_11890 PF00459 Inositol monophosphatase family UGYR_11895 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) UGYR_11900 PF06526 Protein of unknown function (DUF1107) UGYR_11905 PF00571 CBS domain UGYR_11905 PF03471 Transporter associated domain UGYR_11905 PF01595 Cyclin M transmembrane N-terminal domain UGYR_11910 PF01625 Peptide methionine sulfoxide reductase UGYR_11915 PF07244 Surface antigen variable number repeat UGYR_11915 PF17243 POTRA domain TamA domain 1 UGYR_11915 PF01103 Surface antigen UGYR_11920 PF04357 TamB, inner membrane protein subunit of TAM complex UGYR_11925 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like UGYR_11930 PF00719 Inorganic pyrophosphatase UGYR_11935 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain UGYR_11940 PF08245 Mur ligase middle domain UGYR_11940 PF02875 Mur ligase family, glutamate ligase domain UGYR_11940 PF01225 Mur ligase family, catalytic domain UGYR_11945 PF01316 Arginine repressor, DNA binding domain UGYR_11945 PF02863 Arginine repressor, C-terminal domain UGYR_11950 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain UGYR_11950 PF00056 lactate/malate dehydrogenase, NAD binding domain UGYR_11955 PF13693 Winged helix-turn-helix DNA-binding UGYR_11970 PF00348 Polyprenyl synthetase UGYR_11975 PF00829 Ribosomal prokaryotic L21 protein UGYR_11980 PF01016 Ribosomal L27 protein UGYR_11985 PF00892 EamA-like transporter family UGYR_11990 PF01926 50S ribosome-binding GTPase UGYR_11990 PF01018 GTP1/OBG UGYR_11995 PF00512 His Kinase A (phospho-acceptor) domain UGYR_11995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_11995 PF00672 HAMP domain UGYR_12000 PF00072 Response regulator receiver domain UGYR_12000 PF00486 Transcriptional regulatory protein, C terminal UGYR_12005 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family UGYR_12010 PF01272 Transcription elongation factor, GreA/GreB, C-term UGYR_12010 PF03449 Transcription elongation factor, N-terminal UGYR_12015 PF01985 CRS1 / YhbY (CRM) domain UGYR_12020 PF01728 FtsJ-like methyltransferase UGYR_12025 PF17862 AAA+ lid domain UGYR_12025 PF06480 FtsH Extracellular UGYR_12025 PF01434 Peptidase family M41 UGYR_12025 PF00004 ATPase family associated with various cellular activities (AAA) UGYR_12030 PF00809 Pterin binding enzyme UGYR_12035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UGYR_12035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I UGYR_12035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain UGYR_12035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II UGYR_12040 PF03840 Preprotein translocase SecG subunit UGYR_12055 PF02576 RimP N-terminal domain UGYR_12055 PF17384 RimP C-terminal SH3 domain UGYR_12060 PF13184 NusA-like KH domain UGYR_12060 PF08529 NusA N-terminal domain UGYR_12060 PF00575 S1 RNA binding domain UGYR_12065 PF04760 Translation initiation factor IF-2, N-terminal region UGYR_12065 PF03144 Elongation factor Tu domain 2 UGYR_12065 PF00009 Elongation factor Tu GTP binding domain UGYR_12065 PF08364 Bacterial translation initiation factor IF-2 associated region UGYR_12065 PF11987 Translation-initiation factor 2 UGYR_12070 PF02033 Ribosome-binding factor A UGYR_12075 PF01509 TruB family pseudouridylate synthase (N terminal domain) UGYR_12075 PF16198 tRNA pseudouridylate synthase B C-terminal domain UGYR_12075 PF09157 Pseudouridine synthase II TruB, C-terminal UGYR_12080 PF00312 Ribosomal protein S15 UGYR_12085 PF01138 3' exoribonuclease family, domain 1 UGYR_12085 PF03725 3' exoribonuclease family, domain 2 UGYR_12085 PF00575 S1 RNA binding domain UGYR_12085 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain UGYR_12085 PF00013 KH domain UGYR_12090 PF07719 Tetratricopeptide repeat UGYR_12090 PF13181 Tetratricopeptide repeat UGYR_12095 PF03880 DbpA RNA binding domain UGYR_12095 PF00270 DEAD/DEAH box helicase UGYR_12095 PF12343 Cold shock protein DEAD box A UGYR_12095 PF00271 Helicase conserved C-terminal domain UGYR_12100 PF00296 Luciferase-like monooxygenase UGYR_12110 PF03313 Serine dehydratase alpha chain UGYR_12130 PF13508 Acetyltransferase (GNAT) domain UGYR_12135 PF01541 GIY-YIG catalytic domain UGYR_12140 PF13520 Amino acid permease UGYR_12145 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain UGYR_12145 PF01276 Orn/Lys/Arg decarboxylase, major domain UGYR_12145 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain UGYR_12160 PF13460 NAD(P)H-binding UGYR_12165 PF12706 Beta-lactamase superfamily domain UGYR_12175 PF07969 Amidohydrolase family UGYR_12180 PF00005 ABC transporter UGYR_12185 PF00005 ABC transporter UGYR_12190 PF06007 Phosphonate metabolism protein PhnJ UGYR_12195 PF05861 Bacterial phosphonate metabolism protein (PhnI) UGYR_12200 PF05845 Bacterial phosphonate metabolism protein (PhnH) UGYR_12205 PF06754 Phosphonate metabolism protein PhnG UGYR_12215 PF13597 Anaerobic ribonucleoside-triphosphate reductase UGYR_12215 PF03477 ATP cone domain UGYR_12220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UGYR_12220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UGYR_12225 PF06877 Regulator of ribonuclease activity B UGYR_12230 PF00583 Acetyltransferase (GNAT) family UGYR_12235 PF08264 Anticodon-binding domain of tRNA UGYR_12235 PF00133 tRNA synthetases class I (I, L, M and V) UGYR_12235 PF10458 Valyl tRNA synthetase tRNA binding arm UGYR_12240 PF04364 DNA polymerase III chi subunit, HolC UGYR_12245 PF02789 Cytosol aminopeptidase family, N-terminal domain UGYR_12245 PF00883 Cytosol aminopeptidase family, catalytic domain UGYR_12250 PF03739 Lipopolysaccharide export system permease LptF/LptG UGYR_12255 PF03739 Lipopolysaccharide export system permease LptF/LptG UGYR_12265 PF00589 Phage integrase family UGYR_12265 PF13356 Arm DNA-binding domain UGYR_12270 PF00271 Helicase conserved C-terminal domain UGYR_12270 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) UGYR_12270 PF04851 Type III restriction enzyme, res subunit UGYR_12270 PF08463 EcoEI R protein C-terminal UGYR_12275 PF02384 N-6 DNA Methylase UGYR_12280 PF01420 Type I restriction modification DNA specificity domain UGYR_12300 PF12102 Domain of unknown function (DUF3578) UGYR_12300 PF07728 AAA domain (dynein-related subfamily) UGYR_12345 PF06067 Domain of unknown function (DUF932) UGYR_12350 PF03230 Antirestriction protein UGYR_12355 PF06755 CbtA_toxin of type IV toxin-antitoxin system UGYR_12360 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A UGYR_12380 PF01527 Transposase UGYR_12385 PF00665 Integrase core domain UGYR_12385 PF13276 HTH-like domain UGYR_12385 PF13333 Integrase core domain UGYR_12415 PF00145 C-5 cytosine-specific DNA methylase UGYR_12435 PF01527 Transposase UGYR_12455 PF04221 RelB antitoxin UGYR_12460 PF05016 ParE toxin of type II toxin-antitoxin system, parDE UGYR_12505 PF03230 Antirestriction protein UGYR_12510 PF01344 Kelch motif UGYR_12515 PF06178 Oligogalacturonate-specific porin protein (KdgM) UGYR_12535 PF09092 Lyase, N terminal UGYR_12535 PF02278 Polysaccharide lyase family 8, super-sandwich domain UGYR_12535 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain UGYR_12535 PF09093 Lyase, catalytic UGYR_12540 PF00884 Sulfatase UGYR_12550 PF08220 DeoR-like helix-turn-helix domain UGYR_12550 PF00455 DeoR C terminal sensor domain UGYR_12555 PF08013 Tagatose 6 phosphate kinase UGYR_12560 PF01380 SIS domain UGYR_12565 PF03830 PTS system sorbose subfamily IIB component UGYR_12570 PF03609 PTS system sorbose-specific iic component UGYR_12575 PF03613 PTS system mannose/fructose/sorbose family IID component UGYR_12585 PF01979 Amidohydrolase family UGYR_12590 PF04962 KduI/IolB family UGYR_12605 PF13186 Iron-sulfur cluster-binding domain UGYR_12605 PF04055 Radical SAM superfamily UGYR_12610 PF00884 Sulfatase UGYR_12620 PF01116 Fructose-bisphosphate aldolase class-II UGYR_12630 PF10696 Protein of unknown function (DUF2501) UGYR_12635 PF01075 Glycosyltransferase family 9 (heptosyltransferase) UGYR_12650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UGYR_12655 PF00873 AcrB/AcrD/AcrF family UGYR_12660 PF00465 Iron-containing alcohol dehydrogenase UGYR_12665 PF02733 Dak1 domain UGYR_12670 PF02734 DAK2 domain UGYR_12675 PF00391 PEP-utilising enzyme, mobile domain UGYR_12675 PF03610 PTS system fructose IIA component UGYR_12675 PF00381 PTS HPr component phosphorylation site UGYR_12675 PF05524 PEP-utilising enzyme, N-terminal UGYR_12680 PF00158 Sigma-54 interaction domain UGYR_12680 PF00989 PAS fold UGYR_12680 PF02954 Bacterial regulatory protein, Fis family UGYR_12685 PF00990 Diguanylate cyclase, GGDEF domain UGYR_12690 PF07256 Protein of unknown function (DUF1435) UGYR_12710 PF08468 Methyltransferase small domain N-terminal UGYR_12710 PF05175 Methyltransferase small domain UGYR_12715 PF03603 DNA polymerase III psi subunit UGYR_12720 PF00583 Acetyltransferase (GNAT) family UGYR_12725 PF00009 Elongation factor Tu GTP binding domain UGYR_12725 PF03144 Elongation factor Tu domain 2 UGYR_12725 PF16658 Class II release factor RF3, C-terminal domain UGYR_12730 PF04972 BON domain UGYR_12735 PF01734 Patatin-like phospholipase UGYR_12740 PF01026 TatD related DNase UGYR_12745 PF01773 Na+ dependent nucleoside transporter N-terminus UGYR_12745 PF07662 Na+ dependent nucleoside transporter C-terminus UGYR_12745 PF07670 Nucleoside recognition UGYR_12750 PF01791 DeoC/LacD family aldolase UGYR_12755 PF02885 Glycosyl transferase family, helical bundle domain UGYR_12755 PF00591 Glycosyl transferase family, a/b domain UGYR_12755 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain UGYR_12760 PF01676 Metalloenzyme superfamily UGYR_12765 PF01048 Phosphorylase superfamily UGYR_12770 PF10144 Bacterial virulence factor haemolysin UGYR_12775 PF18429 Domain of unknown function (DUF5609) UGYR_12780 PF18073 Rubredoxin metal binding domain UGYR_12785 PF01381 Helix-turn-helix UGYR_12785 PF13521 AAA domain UGYR_12790 PF12848 ABC transporter UGYR_12790 PF00005 ABC transporter UGYR_12805 PF00690 Cation transporter/ATPase, N-terminus UGYR_12805 PF00689 Cation transporting ATPase, C-terminus UGYR_12810 PF14718 Soluble lytic murein transglycosylase L domain UGYR_12810 PF01464 Transglycosylase SLT domain UGYR_12815 PF01371 Trp repressor protein UGYR_12820 PF01931 Protein of unknown function DUF84 UGYR_12825 PF00300 Histidine phosphatase superfamily (branch 1) UGYR_12830 PF12833 Helix-turn-helix domain UGYR_12830 PF06445 GyrI-like small molecule binding domain UGYR_12835 PF05981 CreA protein UGYR_12840 PF00072 Response regulator receiver domain UGYR_12840 PF00486 Transcriptional regulatory protein, C terminal UGYR_12845 PF03447 Homoserine dehydrogenase, NAD binding domain UGYR_12845 PF00742 Homoserine dehydrogenase UGYR_12845 PF00696 Amino acid kinase family UGYR_12845 PF13840 ACT domain UGYR_12845 PF01842 ACT domain UGYR_12850 PF00288 GHMP kinases N terminal domain UGYR_12850 PF08544 GHMP kinases C terminal UGYR_12855 PF14821 Threonine synthase N terminus UGYR_12855 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_12860 PF03883 Peroxide stress protein YaaA UGYR_12865 PF00923 Transaldolase/Fructose-6-phosphate aldolase UGYR_12870 PF00994 Probable molybdopterin binding domain UGYR_12875 PF07690 Major Facilitator Superfamily UGYR_12885 PF01184 GPR1/FUN34/yaaH family UGYR_12890 PF00012 Hsp70 protein UGYR_12895 PF00226 DnaJ domain UGYR_12895 PF01556 DnaJ C terminal domain UGYR_12895 PF00684 DnaJ central domain UGYR_12900 PF06965 Na+/H+ antiporter 1 UGYR_12905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_12905 PF03466 LysR substrate binding domain UGYR_12910 PF01649 Ribosomal protein S20 UGYR_12915 PF06574 FAD synthetase UGYR_12915 PF01687 Riboflavin kinase UGYR_12920 PF00133 tRNA synthetases class I (I, L, M and V) UGYR_12920 PF08264 Anticodon-binding domain of tRNA UGYR_12920 PF06827 Zinc finger found in FPG and IleRS UGYR_12925 PF01252 Signal peptidase (SPase) II UGYR_12930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UGYR_12935 PF02401 LytB protein UGYR_12940 PF01113 Dihydrodipicolinate reductase, N-terminus UGYR_12940 PF05173 Dihydrodipicolinate reductase, C-terminus UGYR_12945 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain UGYR_12945 PF00117 Glutamine amidotransferase class-I UGYR_12950 PF02142 MGS-like domain UGYR_12950 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UGYR_12950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UGYR_12955 PF01810 LysE type translocator UGYR_12960 PF06738 Putative threonine/serine exporter UGYR_12965 PF12821 Threonine/Serine exporter, ThrE UGYR_12970 PF00186 Dihydrofolate reductase UGYR_12980 PF00149 Calcineurin-like phosphoesterase UGYR_12985 PF04379 ApaG domain UGYR_12990 PF00398 Ribosomal RNA adenine dimethylase UGYR_12995 PF04166 Pyridoxal phosphate biosynthetic protein PdxA UGYR_13000 PF09312 SurA N-terminal domain UGYR_13000 PF00639 PPIC-type PPIASE domain UGYR_13005 PF03968 OstA-like protein UGYR_13005 PF04453 LPS transport system D UGYR_13010 PF05099 Tellurite resistance protein TerB UGYR_13010 PF00226 DnaJ domain UGYR_13015 PF00849 RNA pseudouridylate synthase UGYR_13020 PF12137 RNA polymerase recycling family C-terminal UGYR_13020 PF00176 SNF2 family N-terminal domain UGYR_13020 PF18339 RapA N-terminal Tudor like domain 1 UGYR_13020 PF00271 Helicase conserved C-terminal domain UGYR_13020 PF18337 RapA N-terminal Tudor like domain UGYR_13025 PF03104 DNA polymerase family B, exonuclease domain UGYR_13025 PF00136 DNA polymerase family B UGYR_13030 PF09335 SNARE associated Golgi protein UGYR_13035 PF00005 ABC transporter UGYR_13040 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_13050 PF12793 Sugar transport-related sRNA regulator N-term UGYR_13050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UGYR_13055 PF07690 Major Facilitator Superfamily UGYR_13060 PF00694 Aconitase C-terminal domain UGYR_13065 PF00330 Aconitase family (aconitate hydratase) UGYR_13070 PF00180 Isocitrate/isopropylmalate dehydrogenase UGYR_13075 PF00682 HMGL-like UGYR_13075 PF08502 LeuA allosteric (dimerisation) domain UGYR_13080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_13080 PF03466 LysR substrate binding domain UGYR_13085 PF00501 AMP-binding enzyme UGYR_13090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UGYR_13090 PF00205 Thiamine pyrophosphate enzyme, central domain UGYR_13090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UGYR_13095 PF10369 Small subunit of acetolactate synthase UGYR_13100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family UGYR_13100 PF00356 Bacterial regulatory proteins, lacI family UGYR_13105 PF01797 Transposase IS200 like UGYR_13110 PF01385 Probable transposase UGYR_13110 PF07282 Putative transposase DNA-binding domain UGYR_13110 PF12323 Helix-turn-helix domain UGYR_13115 PF06610 L-alanine exporter UGYR_13120 PF02381 MraZ protein, putative antitoxin-like UGYR_13125 PF01795 MraW methylase family UGYR_13130 PF04999 Cell division protein FtsL UGYR_13135 PF03717 Penicillin-binding Protein dimerisation domain UGYR_13135 PF00905 Penicillin binding protein transpeptidase domain UGYR_13140 PF02875 Mur ligase family, glutamate ligase domain UGYR_13140 PF01225 Mur ligase family, catalytic domain UGYR_13140 PF08245 Mur ligase middle domain UGYR_13145 PF02875 Mur ligase family, glutamate ligase domain UGYR_13145 PF08245 Mur ligase middle domain UGYR_13145 PF01225 Mur ligase family, catalytic domain UGYR_13150 PF00953 Glycosyl transferase family 4 UGYR_13150 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 UGYR_13155 PF02875 Mur ligase family, glutamate ligase domain UGYR_13155 PF08245 Mur ligase middle domain UGYR_13160 PF01098 Cell cycle protein UGYR_13165 PF03033 Glycosyltransferase family 28 N-terminal domain UGYR_13165 PF04101 Glycosyltransferase family 28 C-terminal domain UGYR_13170 PF01225 Mur ligase family, catalytic domain UGYR_13170 PF02875 Mur ligase family, glutamate ligase domain UGYR_13170 PF08245 Mur ligase middle domain UGYR_13175 PF01820 D-ala D-ala ligase N-terminus UGYR_13175 PF07478 D-ala D-ala ligase C-terminus UGYR_13180 PF03799 Cell division protein FtsQ UGYR_13180 PF08478 POTRA domain, FtsQ-type UGYR_13185 PF02491 SHS2 domain inserted in FTSA UGYR_13190 PF12327 FtsZ family, C-terminal domain UGYR_13190 PF00091 Tubulin/FtsZ family, GTPase domain UGYR_13195 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase UGYR_13205 PF06558 Secretion monitor precursor protein (SecM) UGYR_13210 PF01043 SecA preprotein cross-linking domain UGYR_13210 PF07517 SecA DEAD-like domain UGYR_13210 PF02810 SEC-C motif UGYR_13210 PF07516 SecA Wing and Scaffold domain UGYR_13215 PF00293 NUDIX domain UGYR_13220 PF03884 DNA gyrase inhibitor YacG UGYR_13225 PF07072 Cell division protein UGYR_13230 PF01121 Dephospho-CoA kinase UGYR_13235 PF00478 IMP dehydrogenase / GMP reductase domain UGYR_13240 PF00482 Type II secretion system (T2SS), protein F UGYR_13245 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain UGYR_13245 PF00437 Type II/IV secretion system protein UGYR_13250 PF07963 Prokaryotic N-terminal methylation motif UGYR_13255 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain UGYR_13255 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain UGYR_13260 PF01510 N-acetylmuramoyl-L-alanine amidase UGYR_13265 PF17113 Regulatory signalling modulator protein AmpE UGYR_13270 PF00324 Amino acid permease UGYR_13275 PF00392 Bacterial regulatory proteins, gntR family UGYR_13275 PF07729 FCD domain UGYR_13280 PF00456 Transketolase, thiamine diphosphate binding domain UGYR_13280 PF17831 Pyruvate dehydrogenase E1 component middle domain UGYR_13285 PF02817 e3 binding domain UGYR_13285 PF00364 Biotin-requiring enzyme UGYR_13285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UGYR_13290 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_13290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UGYR_13300 PF11791 Aconitate B N-terminal domain UGYR_13300 PF00330 Aconitase family (aconitate hydratase) UGYR_13300 PF06434 Aconitate hydratase 2 N-terminus UGYR_13305 PF06062 Uncharacterised protein family (UPF0231) UGYR_13310 PF00892 EamA-like transporter family UGYR_13315 PF02675 S-adenosylmethionine decarboxylase UGYR_13320 PF17284 Spermidine synthase tetramerisation domain UGYR_13325 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) UGYR_13330 PF07731 Multicopper oxidase UGYR_13330 PF00394 Multicopper oxidase UGYR_13330 PF10518 TAT (twin-arginine translocation) pathway signal sequence UGYR_13330 PF07732 Multicopper oxidase UGYR_13335 PF00156 Phosphoribosyl transferase domain UGYR_13340 PF00484 Carbonic anhydrase UGYR_13345 PF00005 ABC transporter UGYR_13350 PF01061 ABC-2 type transporter UGYR_13355 PF01522 Polysaccharide deacetylase UGYR_13360 PF02261 Aspartate decarboxylase UGYR_13365 PF02569 Pantoate-beta-alanine ligase UGYR_13370 PF02548 Ketopantoate hydroxymethyltransferase UGYR_13375 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) UGYR_13380 PF12626 Polymerase A arginine-rich C-terminus UGYR_13380 PF12627 Probable RNA and SrmB- binding site of polymerase A UGYR_13380 PF01743 Poly A polymerase head domain UGYR_13385 PF00749 tRNA synthetases class I (E and Q), catalytic domain UGYR_13390 PF01258 Prokaryotic dksA/traR C4-type zinc finger UGYR_13395 PF03749 Sugar fermentation stimulation protein RE domain UGYR_13395 PF17746 SfsA N-terminal OB domain UGYR_13400 PF02834 LigT like Phosphoesterase UGYR_13405 PF04408 Helicase associated domain (HA2) UGYR_13405 PF00271 Helicase conserved C-terminal domain UGYR_13405 PF00270 DEAD/DEAH box helicase UGYR_13405 PF08482 ATP-dependent helicase C-terminal UGYR_13410 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal UGYR_13410 PF00912 Transglycosylase UGYR_13410 PF00905 Penicillin binding protein transpeptidase domain UGYR_13410 PF14814 Bifunctional transglycosylase second domain UGYR_13415 PF00202 Aminotransferase class-III UGYR_13420 PF00654 Voltage gated chloride channel UGYR_13425 PF01521 Iron-sulphur cluster biosynthesis UGYR_13430 PF03458 UPF0126 domain UGYR_13435 PF01497 Periplasmic binding protein UGYR_13440 PF01048 Phosphorylase superfamily UGYR_13445 PF13286 Phosphohydrolase-associated domain UGYR_13445 PF01966 HD domain UGYR_13450 PF00595 PDZ domain UGYR_13455 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UGYR_13455 PF00512 His Kinase A (phospho-acceptor) domain UGYR_13455 PF01627 Hpt domain UGYR_13455 PF00672 HAMP domain UGYR_13455 PF00072 Response regulator receiver domain UGYR_13455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_13460 PF01938 TRAM domain UGYR_13460 PF05958 tRNA (Uracil-5-)-methyltransferase UGYR_13465 PF13291 ACT domain UGYR_13465 PF04607 Region found in RelA / SpoT proteins UGYR_13465 PF02824 TGS domain UGYR_13470 PF03819 MazG nucleotide pyrophosphohydrolase domain UGYR_13475 PF06418 CTP synthase N-terminus UGYR_13475 PF00117 Glutamine amidotransferase class-I UGYR_13480 PF03952 Enolase, N-terminal domain UGYR_13480 PF00113 Enolase, C-terminal TIM barrel domain UGYR_13485 PF04055 Radical SAM superfamily UGYR_13490 PF01242 6-pyruvoyl tetrahydropterin synthase UGYR_13495 PF00258 Flavodoxin UGYR_13495 PF00175 Oxidoreductase NAD-binding domain UGYR_13495 PF00667 FAD binding domain UGYR_13500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain UGYR_13500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain UGYR_13505 PF01507 Phosphoadenosine phosphosulfate reductase family UGYR_13520 PF04389 Peptidase family M28 UGYR_13525 PF14824 Sirohaem biosynthesis protein central UGYR_13525 PF10414 Sirohaem synthase dimerisation region UGYR_13525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UGYR_13530 PF01507 Phosphoadenosine phosphosulfate reductase family UGYR_13535 PF00009 Elongation factor Tu GTP binding domain UGYR_13545 PF12084 Protein of unknown function (DUF3561) UGYR_13550 PF04977 Septum formation initiator UGYR_13555 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase UGYR_13560 PF02542 YgbB family UGYR_13565 PF01142 tRNA pseudouridine synthase D (TruD) UGYR_13570 PF01975 Survival protein SurE UGYR_13580 PF01551 Peptidase family M23 UGYR_13580 PF01476 LysM domain UGYR_13585 PF04542 Sigma-70 region 2 UGYR_13585 PF04539 Sigma-70 region 3 UGYR_13585 PF00140 Sigma-70 factor, region 1.2 UGYR_13585 PF04545 Sigma-70, region 4 UGYR_13590 PF05190 MutS family domain IV UGYR_13590 PF00488 MutS domain V UGYR_13590 PF01624 MutS domain I UGYR_13590 PF05188 MutS domain II UGYR_13590 PF05192 MutS domain III UGYR_13650 PF00512 His Kinase A (phospho-acceptor) domain UGYR_13650 PF09308 LuxQ, periplasmic UGYR_13650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_13650 PF00072 Response regulator receiver domain UGYR_13655 PF00196 Bacterial regulatory proteins, luxR family UGYR_13655 PF00072 Response regulator receiver domain UGYR_13670 PF01464 Transglycosylase SLT domain UGYR_13690 PF01514 Secretory protein of YscJ/FliF family UGYR_13710 PF12833 Helix-turn-helix domain UGYR_13720 PF07201 HrpJ-like domain UGYR_13725 PF00771 FHIPEP family UGYR_13735 PF18269 T3SS EscN ATPase C-terminal domain UGYR_13735 PF02874 ATP synthase alpha/beta family, beta-barrel domain UGYR_13735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UGYR_13750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UGYR_13755 PF00813 FliP family UGYR_13760 PF01313 Bacterial export proteins, family 3 UGYR_13765 PF01311 Bacterial export proteins, family 1 UGYR_13770 PF01312 FlhB HrpN YscU SpaS Family UGYR_13775 PF07720 Tetratricopeptide repeat UGYR_13800 PF00550 Phosphopantetheine attachment site UGYR_13820 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading UGYR_13820 PF18416 N-acetylglucosamine binding protein domain 2 UGYR_13825 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) UGYR_13830 PF06750 Bacterial Peptidase A24 N-terminal domain UGYR_13830 PF01478 Type IV leader peptidase family UGYR_13840 PF05134 Type II secretion system (T2SS), protein L UGYR_13840 PF12693 GspL periplasmic domain UGYR_13845 PF03934 Type II secretion system (T2SS), protein K UGYR_13850 PF07963 Prokaryotic N-terminal methylation motif UGYR_13850 PF11612 Type II secretion system (T2SS), protein J UGYR_13855 PF07963 Prokaryotic N-terminal methylation motif UGYR_13855 PF02501 Type II secretion system (T2SS), protein I UGYR_13860 PF12019 Type II transport protein GspH UGYR_13860 PF07963 Prokaryotic N-terminal methylation motif UGYR_13865 PF07963 Prokaryotic N-terminal methylation motif UGYR_13865 PF08334 Type II secretion system (T2SS), protein G UGYR_13870 PF00482 Type II secretion system (T2SS), protein F UGYR_13880 PF03958 Bacterial type II/III secretion system short domain UGYR_13880 PF00263 Bacterial type II and III secretion system protein UGYR_13885 PF11356 Type II secretion system protein C UGYR_13910 PF05683 Fumarase C-terminus UGYR_13910 PF05681 Fumarate hydratase (Fumerase) UGYR_13915 PF07690 Major Facilitator Superfamily UGYR_13920 PF02464 Competence-damaged protein UGYR_13925 PF00154 recA bacterial DNA recombination protein UGYR_13930 PF02631 RecX family UGYR_13935 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UGYR_13935 PF02272 DHHA1 domain UGYR_13935 PF01411 tRNA synthetases class II (A) UGYR_13940 PF02599 Global regulator protein family UGYR_13965 PF13419 Haloacid dehalogenase-like hydrolase UGYR_13970 PF09335 SNARE associated Golgi protein UGYR_13975 PF04262 Glutamate-cysteine ligase UGYR_13980 PF02664 S-Ribosylhomocysteinase (LuxS) UGYR_13985 PF00571 CBS domain UGYR_13985 PF03471 Transporter associated domain UGYR_13985 PF01595 Cyclin M transmembrane N-terminal domain UGYR_13990 PF01578 Cytochrome C assembly protein UGYR_13995 PF02881 SRP54-type protein, helical bundle domain UGYR_13995 PF02978 Signal peptide binding domain UGYR_13995 PF00448 SRP54-type protein, GTPase domain UGYR_14000 PF00886 Ribosomal protein S16 UGYR_14005 PF01782 RimM N-terminal domain UGYR_14005 PF05239 PRC-barrel domain UGYR_14010 PF01746 tRNA (Guanine-1)-methyltransferase UGYR_14015 PF01245 Ribosomal protein L19 UGYR_14020 PF04338 Protein of unknown function, DUF481 UGYR_14025 PF03605 Anaerobic c4-dicarboxylate membrane transporter UGYR_14030 PF00072 Response regulator receiver domain UGYR_14030 PF04397 LytTr DNA-binding domain UGYR_14035 PF00793 DAHP synthetase I family UGYR_14040 PF02153 Prephenate dehydrogenase UGYR_14040 PF01817 Chorismate mutase type II UGYR_14045 PF01817 Chorismate mutase type II UGYR_14045 PF00800 Prephenate dehydratase UGYR_14050 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein UGYR_14055 PF13525 Outer membrane lipoprotein UGYR_14060 PF00849 RNA pseudouridylate synthase UGYR_14060 PF01479 S4 domain UGYR_14105 PF03372 Endonuclease/Exonuclease/phosphatase family UGYR_14110 PF01464 Transglycosylase SLT domain UGYR_14110 PF01476 LysM domain UGYR_14115 PF00753 Metallo-beta-lactamase superfamily UGYR_14115 PF16123 Hydroxyacylglutathione hydrolase C-terminus UGYR_14120 PF08241 Methyltransferase domain UGYR_14125 PF00075 RNase H UGYR_14130 PF00929 Exonuclease UGYR_14140 PF09317 Domain of unknown function (DUF1974) UGYR_14140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UGYR_14140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UGYR_14145 PF13580 SIS domain UGYR_14150 PF13230 Glutamine amidotransferases class-II UGYR_14155 PF03734 L,D-transpeptidase catalytic domain UGYR_14160 PF11973 NQRA C-terminal domain UGYR_14160 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) UGYR_14165 PF03116 NQR2, RnfD, RnfE family UGYR_14170 PF04205 FMN-binding domain UGYR_14175 PF02508 Rnf-Nqr subunit, membrane protein UGYR_14180 PF02508 Rnf-Nqr subunit, membrane protein UGYR_14185 PF00175 Oxidoreductase NAD-binding domain UGYR_14185 PF00970 Oxidoreductase FAD-binding domain UGYR_14185 PF00111 2Fe-2S iron-sulfur cluster binding domain UGYR_14190 PF02424 ApbE family UGYR_14195 PF04400 (Na+)-NQR maturation NqrM UGYR_14200 PF03009 Glycerophosphoryl diester phosphodiesterase family UGYR_14205 PF11799 impB/mucB/samB family C-terminal domain UGYR_14205 PF00817 impB/mucB/samB family UGYR_14205 PF11798 IMS family HHH motif UGYR_14210 PF07687 Peptidase dimerisation domain UGYR_14210 PF01546 Peptidase family M20/M25/M40 UGYR_14215 PF00156 Phosphoribosyl transferase domain UGYR_14225 PF07417 Sigma factor-binding transcriptional regulator Crl UGYR_14230 PF01472 PUA domain UGYR_14230 PF00696 Amino acid kinase family UGYR_14235 PF00171 Aldehyde dehydrogenase family UGYR_14240 PF07317 Flagellar regulator YcgR UGYR_14240 PF07238 PilZ domain UGYR_14260 PF01497 Periplasmic binding protein UGYR_14265 PF00593 TonB dependent receptor UGYR_14265 PF07715 TonB-dependent Receptor Plug Domain UGYR_14270 PF01202 Shikimate kinase UGYR_14290 PF07302 AroM protein UGYR_14295 PF06865 Pyrimidine/purine nucleoside phosphorylase UGYR_14300 PF04381 Putative exonuclease, RdgC UGYR_14305 PF00480 ROK family UGYR_14310 PF13476 AAA domain UGYR_14320 PF00072 Response regulator receiver domain UGYR_14320 PF00486 Transcriptional regulatory protein, C terminal UGYR_14325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_14325 PF00512 His Kinase A (phospho-acceptor) domain UGYR_14325 PF00989 PAS fold UGYR_14325 PF11808 Phosphate regulon sensor protein PhoR UGYR_14330 PF12849 PBP superfamily domain UGYR_14335 PF05525 Branched-chain amino acid transport protein UGYR_14340 PF00324 Amino acid permease UGYR_14345 PF02903 Alpha amylase, N-terminal ig-like domain UGYR_14345 PF00128 Alpha amylase, catalytic domain UGYR_14355 PF00578 AhpC/TSA family UGYR_14355 PF10417 C-terminal domain of 1-Cys peroxiredoxin UGYR_14360 PF04336 Acyl carrier protein phosphodiesterase UGYR_14365 PF02547 Queuosine biosynthesis protein UGYR_14370 PF01702 Queuine tRNA-ribosyltransferase UGYR_14375 PF02699 Preprotein translocase subunit UGYR_14380 PF07549 SecD/SecF GG Motif UGYR_14380 PF13721 SecD export protein N-terminal TM region UGYR_14380 PF02355 Protein export membrane protein UGYR_14385 PF02355 Protein export membrane protein UGYR_14385 PF07549 SecD/SecF GG Motif UGYR_14390 PF03477 ATP cone domain UGYR_14395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UGYR_14395 PF01872 RibD C-terminal domain UGYR_14400 PF00885 6,7-dimethyl-8-ribityllumazine synthase UGYR_14405 PF01029 NusB family UGYR_14410 PF02769 AIR synthase related protein, C-terminal domain UGYR_14410 PF00586 AIR synthase related protein, N-terminal domain UGYR_14415 PF04608 Phosphatidylglycerophosphatase A UGYR_14420 PF02779 Transketolase, pyrimidine binding domain UGYR_14420 PF02780 Transketolase, C-terminal domain UGYR_14420 PF13292 1-deoxy-D-xylulose-5-phosphate synthase UGYR_14425 PF00348 Polyprenyl synthetase UGYR_14430 PF02609 Exonuclease VII small subunit UGYR_14435 PF02926 THUMP domain UGYR_14435 PF02568 Thiamine biosynthesis protein (ThiI) UGYR_14440 PF02954 Bacterial regulatory protein, Fis family UGYR_14440 PF00072 Response regulator receiver domain UGYR_14440 PF14532 Sigma-54 interaction domain UGYR_14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_14445 PF00672 HAMP domain UGYR_14445 PF00512 His Kinase A (phospho-acceptor) domain UGYR_14455 PF07690 Major Facilitator Superfamily UGYR_14460 PF01965 DJ-1/PfpI family UGYR_14465 PF02558 Ketopantoate reductase PanE/ApbA UGYR_14465 PF08546 Ketopantoate reductase PanE/ApbA C terminal UGYR_14470 PF04461 Protein of unknown function (DUF520) UGYR_14475 PF07690 Major Facilitator Superfamily UGYR_14480 PF01040 UbiA prenyltransferase family UGYR_14485 PF03626 Prokaryotic Cytochrome C oxidase subunit IV UGYR_14490 PF00510 Cytochrome c oxidase subunit III UGYR_14495 PF00115 Cytochrome C and Quinol oxidase polypeptide I UGYR_14500 PF00116 Cytochrome C oxidase subunit II, periplasmic domain UGYR_14500 PF06481 COX Aromatic Rich Motif UGYR_14505 PF03502 Nucleoside-specific channel-forming protein, Tsx UGYR_14510 PF07690 Major Facilitator Superfamily UGYR_14515 PF08139 Prokaryotic membrane lipoprotein lipid attachment site UGYR_14515 PF03923 Uncharacterized lipoprotein UGYR_14520 PF01722 BolA-like protein UGYR_14525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UGYR_14525 PF05698 Bacterial trigger factor protein (TF) C-terminus UGYR_14525 PF05697 Bacterial trigger factor protein (TF) UGYR_14530 PF00574 Clp protease UGYR_14535 PF06689 ClpX C4-type zinc finger UGYR_14535 PF07724 AAA domain (Cdc48 subfamily) UGYR_14535 PF10431 C-terminal, D2-small domain, of ClpB protein UGYR_14540 PF02190 ATP-dependent protease La (LON) substrate-binding domain UGYR_14540 PF05362 Lon protease (S16) C-terminal proteolytic domain UGYR_14540 PF00004 ATPase family associated with various cellular activities (AAA) UGYR_14545 PF00216 Bacterial DNA-binding protein UGYR_14550 PF13145 PPIC-type PPIASE domain UGYR_14565 PF06508 Queuosine biosynthesis protein QueC UGYR_14570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UGYR_14570 PF12793 Sugar transport-related sRNA regulator N-term UGYR_14585 PF01037 Lrp/AsnC ligand binding domain UGYR_14585 PF13404 AsnC-type helix-turn-helix domain UGYR_14590 PF00005 ABC transporter UGYR_14590 PF00664 ABC transporter transmembrane region UGYR_14595 PF00005 ABC transporter UGYR_14595 PF00664 ABC transporter transmembrane region UGYR_14600 PF00543 Nitrogen regulatory protein P-II UGYR_14605 PF00909 Ammonium Transporter Family UGYR_14615 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain UGYR_14620 PF05321 Haemolysin expression modulating protein UGYR_14625 PF10757 Biofilm formation regulator YbaJ UGYR_14635 PF01197 Ribosomal protein L31 UGYR_14640 PF00873 AcrB/AcrD/AcrF family UGYR_14645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UGYR_14645 PF00529 HlyD membrane-fusion protein of T1SS UGYR_14650 PF00440 Bacterial regulatory proteins, tetR family UGYR_14650 PF08361 MAATS-type transcriptional repressor, C-terminal region UGYR_14655 PF02635 DsrE/DsrF-like family UGYR_14660 PF00924 Mechanosensitive ion channel UGYR_14660 PF12795 Mechanosensitive ion channel porin domain UGYR_14660 PF12794 Mechanosensitive ion channel inner membrane domain 1 UGYR_14670 PF04304 Protein of unknown function (DUF454) UGYR_14675 PF00156 Phosphoribosyl transferase domain UGYR_14680 PF01970 Tripartite tricarboxylate transporter TctA family UGYR_14695 PF00486 Transcriptional regulatory protein, C terminal UGYR_14695 PF00072 Response regulator receiver domain UGYR_14700 PF00512 His Kinase A (phospho-acceptor) domain UGYR_14700 PF08521 Two-component sensor kinase N-terminal UGYR_14700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_14705 PF12169 DNA polymerase III subunits gamma and tau domain III UGYR_14705 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding UGYR_14705 PF12170 DNA polymerase III tau subunit V interacting with alpha UGYR_14710 PF02575 YbaB/EbfC DNA-binding family UGYR_14715 PF13662 Toprim domain UGYR_14715 PF02132 RecR protein UGYR_14720 PF00183 Hsp90 protein UGYR_14720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_14725 PF05191 Adenylate kinase, active site lid UGYR_14730 PF00762 Ferrochelatase UGYR_14735 PF02706 Chain length determinant protein UGYR_14740 PF00294 pfkB family carbohydrate kinase UGYR_14745 PF02254 TrkA-N domain UGYR_14745 PF00999 Sodium/hydrogen exchanger family UGYR_14750 PF02872 5'-nucleotidase, C-terminal domain UGYR_14750 PF00149 Calcineurin-like phosphoesterase UGYR_14765 PF08242 Methyltransferase domain UGYR_14780 PF02350 UDP-N-acetylglucosamine 2-epimerase UGYR_14790 PF02719 Polysaccharide biosynthesis protein UGYR_14790 PF08485 Polysaccharide biosynthesis protein C-terminal UGYR_14805 PF04073 Aminoacyl-tRNA editing domain UGYR_14810 PF01963 TraB family UGYR_14815 PF00403 Heavy-metal-associated domain UGYR_14820 PF13411 MerR HTH family regulatory protein UGYR_14825 PF01957 NfeD-like C-terminal, partner-binding UGYR_14830 PF01145 SPFH domain / Band 7 family UGYR_14830 PF16200 C-terminal region of band_7 UGYR_14835 PF00085 Thioredoxin UGYR_14840 PF00106 short chain dehydrogenase UGYR_14845 PF13472 GDSL-like Lipase/Acylhydrolase family UGYR_14850 PF00005 ABC transporter UGYR_14860 PF02222 ATP-grasp domain UGYR_14860 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain UGYR_14865 PF00731 AIR carboxylase UGYR_14870 PF00149 Calcineurin-like phosphoesterase UGYR_14875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UGYR_14880 PF01406 tRNA synthetases class I (C) catalytic domain UGYR_14880 PF09190 DALR domain UGYR_14895 PF00419 Fimbrial protein UGYR_14900 PF00577 Outer membrane usher protein UGYR_14900 PF13953 PapC C-terminal domain UGYR_14900 PF13954 PapC N-terminal domain UGYR_14905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain UGYR_14905 PF02753 Pili assembly chaperone PapD, C-terminal domain UGYR_14940 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain UGYR_14940 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UGYR_14950 PF01022 Bacterial regulatory protein, arsR family UGYR_14955 PF02040 Arsenical pump membrane protein UGYR_14960 PF03960 ArsC family UGYR_14970 PF00501 AMP-binding enzyme UGYR_14995 PF01292 Prokaryotic cytochrome b561 UGYR_15005 PF00343 Carbohydrate phosphorylase UGYR_15015 PF00072 Response regulator receiver domain UGYR_15025 PF00483 Nucleotidyl transferase UGYR_15035 PF00535 Glycosyl transferase family 2 UGYR_15035 PF07238 PilZ domain UGYR_15035 PF03552 Cellulose synthase UGYR_15060 PF00672 HAMP domain UGYR_15060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_15060 PF00512 His Kinase A (phospho-acceptor) domain UGYR_15060 PF01627 Hpt domain UGYR_15060 PF00072 Response regulator receiver domain UGYR_15060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) UGYR_15065 PF00072 Response regulator receiver domain UGYR_15065 PF00990 Diguanylate cyclase, GGDEF domain UGYR_15070 PF00440 Bacterial regulatory proteins, tetR family UGYR_15095 PF00196 Bacterial regulatory proteins, luxR family UGYR_15100 PF00313 'Cold-shock' DNA-binding domain UGYR_15105 PF00313 'Cold-shock' DNA-binding domain UGYR_15110 PF02537 CrcB-like protein, Camphor Resistance (CrcB) UGYR_15120 PF05230 MASE2 domain UGYR_15120 PF00990 Diguanylate cyclase, GGDEF domain UGYR_15125 PF02416 mttA/Hcf106 family UGYR_15130 PF04055 Radical SAM superfamily UGYR_15130 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family UGYR_15135 PF03099 Biotin/lipoate A/B protein ligase family UGYR_15140 PF04359 Protein of unknown function (DUF493) UGYR_15145 PF00768 D-alanyl-D-alanine carboxypeptidase UGYR_15145 PF07943 Penicillin-binding protein 5, C-terminal domain UGYR_15150 PF05036 Sporulation related domain UGYR_15150 PF03330 Lytic transglycolase UGYR_15155 PF01098 Cell cycle protein UGYR_15160 PF03717 Penicillin-binding Protein dimerisation domain UGYR_15160 PF00905 Penicillin binding protein transpeptidase domain UGYR_15165 PF02590 Predicted SPOUT methyltransferase UGYR_15175 PF01467 Cytidylyltransferase-like UGYR_15180 PF14840 Processivity clamp loader gamma complex DNA pol III C-term UGYR_15180 PF06144 DNA polymerase III, delta subunit UGYR_15185 PF04390 Lipopolysaccharide-assembly UGYR_15190 PF00133 tRNA synthetases class I (I, L, M and V) UGYR_15190 PF08264 Anticodon-binding domain of tRNA UGYR_15190 PF13603 Leucyl-tRNA synthetase, Domain 2 UGYR_15195 PF07295 Zinc-ribbon containing domain UGYR_15200 PF00005 ABC transporter UGYR_15205 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_15210 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_15215 PF00497 Bacterial extracellular solute-binding proteins, family 3 UGYR_15225 PF00795 Carbon-nitrogen hydrolase UGYR_15230 PF03471 Transporter associated domain UGYR_15230 PF00571 CBS domain UGYR_15235 PF02130 Uncharacterized protein family UPF0054 UGYR_15240 PF02562 PhoH-like protein UGYR_15245 PF00919 Uncharacterized protein family UPF0004 UGYR_15245 PF04055 Radical SAM superfamily UGYR_15245 PF01938 TRAM domain UGYR_15250 PF01494 FAD binding domain UGYR_15285 PF00733 Asparagine synthase UGYR_15285 PF13537 Glutamine amidotransferase domain UGYR_15290 PF13344 Haloacid dehalogenase-like hydrolase UGYR_15295 PF01047 MarR family UGYR_15295 PF00480 ROK family UGYR_15300 PF01979 Amidohydrolase family UGYR_15305 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase UGYR_15310 PF02378 Phosphotransferase system, EIIC UGYR_15310 PF00367 phosphotransferase system, EIIB UGYR_15310 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UGYR_15315 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain UGYR_15315 PF00749 tRNA synthetases class I (E and Q), catalytic domain UGYR_15320 PF03573 outer membrane porin, OprD family UGYR_15325 PF13982 YbfN-like lipoprotein UGYR_15330 PF00728 Glycosyl hydrolase family 20, catalytic domain UGYR_15330 PF02838 Glycosyl hydrolase family 20, domain 2 UGYR_15330 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain UGYR_15330 PF03173 Putative carbohydrate binding domain UGYR_15335 PF01475 Ferric uptake regulator family UGYR_15340 PF00258 Flavodoxin UGYR_15345 PF00672 HAMP domain UGYR_15345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UGYR_15345 PF02203 Tar ligand binding domain homologue UGYR_15350 PF01402 Ribbon-helix-helix protein, copG family UGYR_15355 PF12697 Alpha/beta hydrolase family UGYR_15360 PF17206 SeqA protein N-terminal domain UGYR_15360 PF03925 SeqA protein C-terminal domain UGYR_15365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I UGYR_15365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UGYR_15365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain UGYR_15365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II UGYR_15375 PF00072 Response regulator receiver domain UGYR_15375 PF00486 Transcriptional regulatory protein, C terminal UGYR_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_15380 PF13493 Domain of unknown function (DUF4118) UGYR_15380 PF13492 GAF domain UGYR_15380 PF02702 Osmosensitive K+ channel His kinase sensor domain UGYR_15380 PF00512 His Kinase A (phospho-acceptor) domain UGYR_15385 PF02669 K+-transporting ATPase, c chain UGYR_15395 PF03814 Potassium-transporting ATPase A subunit UGYR_15400 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) UGYR_15405 PF10725 Protein of unknown function (DUF2517) UGYR_15410 PF08349 Protein of unknown function (DUF1722) UGYR_15415 PF03441 FAD binding domain of DNA photolyase UGYR_15415 PF00875 DNA photolyase UGYR_15420 PF02112 cAMP phosphodiesterases class-II UGYR_15425 PF01784 NIF3 (NGG1p interacting factor 3) UGYR_15430 PF02682 Carboxyltransferase domain, subdomain C and D UGYR_15435 PF02626 Carboxyltransferase domain, subdomain A and B UGYR_15440 PF03746 LamB/YcsF family UGYR_15455 PF01470 Pyroglutamyl peptidase UGYR_15465 PF00285 Citrate synthase, C-terminal domain UGYR_15470 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit UGYR_15475 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit UGYR_15480 PF00890 FAD binding domain UGYR_15480 PF02910 Fumarate reductase flavoprotein C-term UGYR_15485 PF13085 2Fe-2S iron-sulfur cluster binding domain UGYR_15490 PF02779 Transketolase, pyrimidine binding domain UGYR_15490 PF00676 Dehydrogenase E1 component UGYR_15490 PF16078 2-oxoglutarate dehydrogenase N-terminus UGYR_15490 PF16870 2-oxoglutarate dehydrogenase C-terminal UGYR_15495 PF00364 Biotin-requiring enzyme UGYR_15495 PF02817 e3 binding domain UGYR_15495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UGYR_15500 PF08442 ATP-grasp domain UGYR_15500 PF00549 CoA-ligase UGYR_15505 PF02629 CoA binding domain UGYR_15505 PF00549 CoA-ligase UGYR_15510 PF00149 Calcineurin-like phosphoesterase UGYR_15510 PF02872 5'-nucleotidase, C-terminal domain UGYR_15515 PF01654 Cytochrome bd terminal oxidase subunit I UGYR_15520 PF02322 Cytochrome bd terminal oxidase subunit II UGYR_15525 PF08173 Membrane bound YbgT-like protein UGYR_15530 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) UGYR_15535 PF03061 Thioesterase superfamily UGYR_15540 PF01618 MotA/TolQ/ExbB proton channel family UGYR_15545 PF02472 Biopolymer transport protein ExbD/TolR UGYR_15550 PF06519 TolA C-terminal UGYR_15550 PF06519 TolA C-terminal UGYR_15555 PF04052 TolB amino-terminal domain UGYR_15555 PF07676 WD40-like Beta Propeller Repeat UGYR_15560 PF00691 OmpA family UGYR_15565 PF16331 TolA binding protein trimerisation UGYR_15565 PF13174 Tetratricopeptide repeat UGYR_15590 PF02445 Quinolinate synthetase A protein UGYR_15595 PF04973 Nicotinamide mononucleotide transporter UGYR_15600 PF00072 Response regulator receiver domain UGYR_15600 PF00989 PAS fold UGYR_15600 PF00512 His Kinase A (phospho-acceptor) domain UGYR_15600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UGYR_15600 PF01627 Hpt domain UGYR_15600 PF00497 Bacterial extracellular solute-binding proteins, family 3 UGYR_15605 PF00072 Response regulator receiver domain UGYR_15605 PF00196 Bacterial regulatory proteins, luxR family UGYR_15610 PF00793 DAHP synthetase I family UGYR_15615 PF00300 Histidine phosphatase superfamily (branch 1) UGYR_15625 PF01263 Aldose 1-epimerase UGYR_15630 PF08544 GHMP kinases C terminal UGYR_15630 PF00288 GHMP kinases N terminal domain UGYR_15630 PF10509 Galactokinase galactose-binding signature UGYR_15635 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain UGYR_15635 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain UGYR_15640 PF16363 GDP-mannose 4,6 dehydratase UGYR_15650 PF03459 TOBE domain UGYR_15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_15655 PF10766 Multidrug efflux pump-associated protein AcrZ UGYR_15665 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_15670 PF03459 TOBE domain UGYR_15670 PF00005 ABC transporter UGYR_15680 PF10282 Lactonase, 7-bladed beta-propeller UGYR_15685 PF00202 Aminotransferase class-III UGYR_15690 PF06968 Biotin and Thiamin Synthesis associated domain UGYR_15690 PF04055 Radical SAM superfamily UGYR_15695 PF00155 Aminotransferase class I and II UGYR_15700 PF08241 Methyltransferase domain UGYR_15710 PF00005 ABC transporter UGYR_15715 PF02151 UvrB/uvrC motif UGYR_15715 PF17757 UvrB interaction domain UGYR_15715 PF12344 Ultra-violet resistance protein B UGYR_15715 PF04851 Type III restriction enzyme, res subunit UGYR_15715 PF00271 Helicase conserved C-terminal domain UGYR_15720 PF09905 DNA-binding protein VF530 UGYR_15745 PF01933 Uncharacterised protein family UPF0052 UGYR_15750 PF06463 Molybdenum Cofactor Synthesis C UGYR_15750 PF04055 Radical SAM superfamily UGYR_15755 PF01967 MoaC family UGYR_15760 PF02597 ThiS family UGYR_15765 PF02391 MoaE protein UGYR_15770 PF01027 Inhibitor of apoptosis-promoting Bax1 UGYR_15785 PF00005 ABC transporter UGYR_15790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UGYR_15795 PF00440 Bacterial regulatory proteins, tetR family UGYR_15795 PF09209 Tetracyclin repressor-like, C-terminal domain UGYR_15800 PF00271 Helicase conserved C-terminal domain UGYR_15800 PF00270 DEAD/DEAH box helicase UGYR_15805 PF01207 Dihydrouridine synthase (Dus) UGYR_15815 PF00768 D-alanyl-D-alanine carboxypeptidase UGYR_15820 PF01565 FAD binding domain UGYR_15820 PF09330 D-lactate dehydrogenase, membrane binding UGYR_15825 PF01928 CYTH domain UGYR_15830 PF01844 HNH endonuclease UGYR_15840 PF04226 Transglycosylase associated protein UGYR_15845 PF00005 ABC transporter UGYR_15855 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_15860 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_15865 PF07308 Protein of unknown function (DUF1456) UGYR_15870 PF00581 Rhodanese-like domain UGYR_15875 PF04069 Substrate binding domain of ABC-type glycine betaine transport system UGYR_15880 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_15885 PF00005 ABC transporter UGYR_15890 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_15895 PF13520 Amino acid permease UGYR_15900 PF01276 Orn/Lys/Arg decarboxylase, major domain UGYR_15900 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain UGYR_15900 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain UGYR_15910 PF00892 EamA-like transporter family UGYR_15915 PF00267 Gram-negative porin UGYR_15920 PF06733 DEAD_2 UGYR_15920 PF13307 Helicase C-terminal domain UGYR_15925 PF02885 Glycosyl transferase family, helical bundle domain UGYR_15930 PF05971 RNA methyltransferase UGYR_15935 PF00005 ABC transporter UGYR_15940 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_15945 PF00497 Bacterial extracellular solute-binding proteins, family 3 UGYR_15950 PF00210 Ferritin-like domain UGYR_15955 PF13649 Methyltransferase domain UGYR_15960 PF00892 EamA-like transporter family UGYR_15965 PF13505 Outer membrane protein beta-barrel domain UGYR_15970 PF00571 CBS domain UGYR_15970 PF01769 Divalent cation transporter UGYR_15970 PF03448 MgtE intracellular N domain UGYR_15980 PF16916 Dimerisation domain of Zinc Transporter UGYR_15980 PF01545 Cation efflux family UGYR_15985 PF12848 ABC transporter UGYR_15985 PF00005 ABC transporter UGYR_15990 PF00899 ThiF family UGYR_15995 PF03453 MoeA N-terminal region (domain I and II) UGYR_15995 PF03454 MoeA C-terminal region (domain IV) UGYR_15995 PF00994 Probable molybdopterin binding domain UGYR_16005 PF00756 Putative esterase UGYR_16010 PF00107 Zinc-binding dehydrogenase UGYR_16010 PF08240 Alcohol dehydrogenase GroES-like domain UGYR_16015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_16015 PF03466 LysR substrate binding domain UGYR_16020 PF06779 Uncharacterised MFS-type transporter YbfB UGYR_16025 PF01227 GTP cyclohydrolase I UGYR_16030 PF04235 Protein of unknown function (DUF418) UGYR_16035 PF00356 Bacterial regulatory proteins, lacI family UGYR_16040 PF13407 Periplasmic binding protein domain UGYR_16045 PF00005 ABC transporter UGYR_16050 PF02653 Branched-chain amino acid transport system / permease component UGYR_16055 PF02698 DUF218 domain UGYR_16060 PF03949 Malic enzyme, NAD binding domain UGYR_16060 PF00390 Malic enzyme, N-terminal domain UGYR_16070 PF03466 LysR substrate binding domain UGYR_16070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UGYR_16075 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region UGYR_16075 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UGYR_16080 PF04172 LrgB-like family UGYR_16085 PF03788 LrgA family UGYR_16095 PF09334 tRNA synthetases class I (M) UGYR_16095 PF01588 Putative tRNA binding domain UGYR_16100 PF10609 NUBPL iron-transfer P-loop NTPase UGYR_16105 PF00485 Phosphoribulokinase / Uridine kinase family UGYR_16110 PF00692 dUTPase UGYR_16115 PF05170 AsmA family UGYR_16120 PF03606 C4-dicarboxylate anaerobic carrier UGYR_16125 PF03471 Transporter associated domain UGYR_16125 PF03741 Integral membrane protein TerC family UGYR_16125 PF00571 CBS domain UGYR_16130 PF00483 Nucleotidyl transferase UGYR_16135 PF00483 Nucleotidyl transferase UGYR_16140 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain UGYR_16140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UGYR_16145 PF01502 Phosphoribosyl-AMP cyclohydrolase UGYR_16145 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase UGYR_16150 PF00977 Histidine biosynthesis protein UGYR_16155 PF00977 Histidine biosynthesis protein UGYR_16160 PF00117 Glutamine amidotransferase class-I UGYR_16165 PF00475 Imidazoleglycerol-phosphate dehydratase UGYR_16170 PF00155 Aminotransferase class I and II UGYR_16175 PF00815 Histidinol dehydrogenase UGYR_16180 PF08029 HisG, C-terminal domain UGYR_16180 PF01634 ATP phosphoribosyltransferase UGYR_16185 PF01370 NAD dependent epimerase/dehydratase family UGYR_16190 PF00043 Glutathione S-transferase, C-terminal domain UGYR_16190 PF13417 Glutathione S-transferase, N-terminal domain UGYR_16205 PF01053 Cys/Met metabolism PLP-dependent enzyme UGYR_16210 PF00291 Pyridoxal-phosphate dependent enzyme UGYR_16210 PF00571 CBS domain UGYR_16215 PF07943 Penicillin-binding protein 5, C-terminal domain UGYR_16215 PF00768 D-alanyl-D-alanine carboxypeptidase UGYR_16220 PF03313 Serine dehydratase alpha chain UGYR_16220 PF03315 Serine dehydratase beta chain UGYR_16230 PF08220 DeoR-like helix-turn-helix domain UGYR_16230 PF00455 DeoR C terminal sensor domain UGYR_16235 PF01791 DeoC/LacD family aldolase UGYR_16240 PF01569 PAP2 superfamily UGYR_16250 PF02080 TrkA-C domain UGYR_16250 PF06826 Predicted Permease Membrane Region UGYR_16255 PF00462 Glutaredoxin UGYR_16260 PF07214 Protein of unknown function (DUF1418) UGYR_16265 PF10722 Putative bacterial sensory transduction regulator UGYR_16270 PF13416 Bacterial extracellular solute-binding protein UGYR_16275 PF08402 TOBE domain UGYR_16275 PF00005 ABC transporter UGYR_16280 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_16285 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_16290 PF10767 Protein of unknown function (DUF2593) UGYR_16295 PF05958 tRNA (Uracil-5-)-methyltransferase UGYR_16300 PF00497 Bacterial extracellular solute-binding proteins, family 3 UGYR_16305 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_16310 PF00528 Binding-protein-dependent transport system inner membrane component UGYR_16315 PF00497 Bacterial extracellular solute-binding proteins, family 3 UGYR_16320 PF00005 ABC transporter UGYR_16325 PF12883 Protein of unknown function (DUF3828) UGYR_16330 PF01906 Putative heavy-metal-binding UGYR_16335 PF01370 NAD dependent epimerase/dehydratase family UGYR_16340 PF11066 Protein of unknown function (DUF2867) UGYR_16340 PF13460 NAD(P)H-binding UGYR_16345 PF01212 Beta-eliminating lyase UGYR_16350 PF00970 Oxidoreductase FAD-binding domain UGYR_16350 PF00111 2Fe-2S iron-sulfur cluster binding domain UGYR_16350 PF00175 Oxidoreductase NAD-binding domain UGYR_16355 PF03063 Prismane/CO dehydrogenase family UGYR_16360 PF03956 Lysine exporter LysO UGYR_16365 PF11398 Protein of unknown function (DUF2813) UGYR_16375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UGYR_16380 PF12704 MacB-like periplasmic core domain UGYR_16380 PF02687 FtsX-like permease family UGYR_16380 PF00005 ABC transporter UGYR_16385 PF00313 'Cold-shock' DNA-binding domain UGYR_16390 PF02617 ATP-dependent Clp protease adaptor protein ClpS UGYR_16395 PF10431 C-terminal, D2-small domain, of ClpB protein UGYR_16395 PF02861 Clp amino terminal domain, pathogenicity island component UGYR_16395 PF17871 AAA lid domain UGYR_16395 PF07724 AAA domain (Cdc48 subfamily) UGYR_16395 PF00004 ATPase family associated with various cellular activities (AAA) UGYR_16400 PF01176 Translation initiation factor 1A / IF-1 UGYR_16405 PF03588 Leucyl/phenylalanyl-tRNA protein transferase UGYR_16410 PF00664 ABC transporter transmembrane region UGYR_16410 PF00005 ABC transporter UGYR_16415 PF00664 ABC transporter transmembrane region UGYR_16415 PF00005 ABC transporter UGYR_16420 PF07992 Pyridine nucleotide-disulphide oxidoreductase UGYR_16425 PF01037 Lrp/AsnC ligand binding domain UGYR_16430 PF01580 FtsK/SpoIIIE family UGYR_16430 PF17854 FtsK alpha domain UGYR_16430 PF09397 Ftsk gamma domain UGYR_16430 PF13491 4TM region of DNA translocase FtsK/SpoIIIE UGYR_16435 PF03548 Outer membrane lipoprotein carrier protein LolA UGYR_16440 PF00004 ATPase family associated with various cellular activities (AAA) UGYR_16440 PF12002 MgsA AAA+ ATPase C terminal UGYR_16440 PF16193 AAA C-terminal domain UGYR_16445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UGYR_16445 PF02403 Seryl-tRNA synthetase N-terminal domain UGYR_16450 PF07690 Major Facilitator Superfamily UGYR_16455 PF04055 Radical SAM superfamily UGYR_16460 PF01228 Glycine radical UGYR_16460 PF02901 Pyruvate formate lyase-like UGYR_16465 PF01226 Formate/nitrite transporter UGYR_16470 PF18381 YcaO cyclodehydratase C-terminal domain UGYR_16470 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding UGYR_16475 PF17763 Glutaminase/Asparaginase C-terminal domain UGYR_16475 PF00710 Asparaginase, N-terminal UGYR_16480 PF00266 Aminotransferase class-V UGYR_16485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UGYR_16490 PF02224 Cytidylate kinase UGYR_16495 PF00575 S1 RNA binding domain UGYR_16500 PF00216 Bacterial DNA-binding protein UGYR_16505 PF00753 Metallo-beta-lactamase superfamily UGYR_16505 PF03772 Competence protein UGYR_16510 PF00005 ABC transporter UGYR_16510 PF00664 ABC transporter transmembrane region UGYR_16515 PF02606 Tetraacyldisaccharide-1-P 4'-kinase UGYR_16520 PF07063 Domain of unknown function (DUF1338) UGYR_16525 PF00313 'Cold-shock' DNA-binding domain UGYR_16530 PF00313 'Cold-shock' DNA-binding domain UGYR_16535 PF03966 Trm112p-like protein UGYR_16540 PF02348 Cytidylyltransferase UGYR_16545 PF01636 Phosphotransferase enzyme family UGYR_16550 PF02698 DUF218 domain UGYR_16560 PF17193 MukF C-terminal domain UGYR_16560 PF17192 MukF middle domain UGYR_16560 PF03882 MukF winged-helix domain UGYR_16565 PF04288 MukE-like family UGYR_16570 PF04310 MukB N-terminal UGYR_16570 PF16330 MukB hinge domain UGYR_16575 PF01471 Putative peptidoglycan binding domain UGYR_16575 PF03734 L,D-transpeptidase catalytic domain UGYR_16580 PF05951 Bacterial protein of unknown function (DUF882) UGYR_16585 PF00753 Metallo-beta-lactamase superfamily UGYR_16590 PF00155 Aminotransferase class I and II UGYR_16595 PF00267 Gram-negative porin UGYR_16600 PF00152 tRNA synthetases class II (D, K and N) UGYR_16600 PF01336 OB-fold nucleic acid binding domain