locus-tag class description YR821_0001 PF00308 Bacterial dnaA protein YR821_0001 PF08299 Bacterial dnaA protein helix-turn-helix YR821_0001 PF11638 DnaA N-terminal domain YR821_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain YR821_0002 PF02767 DNA polymerase III beta subunit, central domain YR821_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain YR821_0004 PF02463 RecF/RecN/SMC N terminal domain YR821_0005 PF00204 DNA gyrase B YR821_0005 PF00986 DNA gyrase B subunit, carboxyl terminus YR821_0005 PF18053 DNA gyrase B subunit insert domain YR821_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0005 PF01751 Toprim domain YR821_0007 PF07676 WD40-like Beta Propeller Repeat YR821_0007 PF12566 Protein of unknown function (DUF3748) YR821_0008 PF07119 Protein of unknown function (DUF1375) YR821_0009 PF00011 Hsp20/alpha crystallin family YR821_0010 PF00011 Hsp20/alpha crystallin family YR821_0011 PF06826 Predicted Permease Membrane Region YR821_0011 PF02080 TrkA-C domain YR821_0012 PF00155 Aminotransferase class I and II YR821_0013 PF13488 Glycine zipper YR821_0013 PF00691 OmpA family YR821_0018 PF03352 Methyladenine glycosylase YR821_0020 PF02091 Glycyl-tRNA synthetase alpha subunit YR821_0021 PF05746 DALR anticodon binding domain YR821_0021 PF02092 Glycyl-tRNA synthetase beta subunit YR821_0022 PF11254 Protein of unknown function (DUF3053) YR821_0028 PF02378 Phosphotransferase system, EIIC YR821_0028 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YR821_0028 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YR821_0029 PF01232 Mannitol dehydrogenase Rossmann domain YR821_0029 PF08125 Mannitol dehydrogenase C-terminal domain YR821_0030 PF05068 Mannitol repressor YR821_0031 PF10928 Protein of unknown function (DUF2810) YR821_0032 PF03475 3-alpha domain YR821_0032 PF03473 MOSC domain YR821_0033 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YR821_0033 PF00672 HAMP domain YR821_0033 PF02203 Tar ligand binding domain homologue YR821_0034 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YR821_0034 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YR821_0035 PF02634 FdhD/NarQ family YR821_0037 PF09163 Formate dehydrogenase N, transmembrane YR821_0037 PF13247 4Fe-4S dicluster domain YR821_0038 PF01292 Prokaryotic cytochrome b561 YR821_0039 PF04216 Protein involved in formate dehydrogenase formation YR821_0040 PF03841 L-seryl-tRNA selenium transferase YR821_0040 PF12390 Selenocysteine synthase N terminal YR821_0041 PF03144 Elongation factor Tu domain 2 YR821_0041 PF00009 Elongation factor Tu GTP binding domain YR821_0041 PF09107 Elongation factor SelB, winged helix YR821_0041 PF09106 Elongation factor SelB, winged helix YR821_0042 PF01427 D-ala-D-ala dipeptidase YR821_0043 PF07690 Major Facilitator Superfamily YR821_0044 PF01757 Acyltransferase family YR821_0045 PF13356 Arm DNA-binding domain YR821_0045 PF00589 Phage integrase family YR821_0046 PF13276 HTH-like domain YR821_0046 PF13333 Integrase core domain YR821_0046 PF00665 Integrase core domain YR821_0047 PF01527 Transposase YR821_0053 PF17391 Urocanase N-terminal domain YR821_0053 PF17392 Urocanase C-terminal domain YR821_0053 PF01175 Urocanase Rossmann-like domain YR821_0054 PF00221 Aromatic amino acid lyase YR821_0055 PF00324 Amino acid permease YR821_0057 PF12146 Serine aminopeptidase, S33 YR821_0058 PF00884 Sulfatase YR821_0058 PF08019 Phosphoethanolamine transferase EptA/EptB YR821_0059 PF00072 Response regulator receiver domain YR821_0059 PF00196 Bacterial regulatory proteins, luxR family YR821_0060 PF05231 MASE1 YR821_0060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0060 PF07730 Histidine kinase YR821_0061 PF07690 Major Facilitator Superfamily YR821_0062 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YR821_0063 PF00528 Binding-protein-dependent transport system inner membrane component YR821_0064 PF00528 Binding-protein-dependent transport system inner membrane component YR821_0064 PF12911 N-terminal TM domain of oligopeptide transport permease C YR821_0065 PF00005 ABC transporter YR821_0065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YR821_0066 PF00005 ABC transporter YR821_0066 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YR821_0067 PF11658 Cellulose biosynthesis protein BcsG YR821_0068 PF11120 Cellulose biosynthesis protein BcsF YR821_0069 PF10995 Cellulose biosynthesis GIL YR821_0071 PF06564 Cellulose biosynthesis protein BcsQ YR821_0072 PF07238 PilZ domain YR821_0072 PF00535 Glycosyl transferase family 2 YR821_0073 PF03170 Bacterial cellulose synthase subunit YR821_0074 PF01270 Glycosyl hydrolases family 8 YR821_0075 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) YR821_0076 PF00672 HAMP domain YR821_0076 PF00990 Diguanylate cyclase, GGDEF domain YR821_0076 PF17154 Gammaproteobacterial periplasmic sensor domain YR821_0076 PF00563 EAL domain YR821_0077 PF00375 Sodium:dicarboxylate symporter family YR821_0078 PF05193 Peptidase M16 inactive domain YR821_0078 PF00675 Insulinase (Peptidase family M16) YR821_0079 PF00294 pfkB family carbohydrate kinase YR821_0080 PF01361 Tautomerase enzyme YR821_0081 PF00563 EAL domain YR821_0082 PF02611 CDP-diacylglycerol pyrophosphatase YR821_0083 PF03631 Virulence factor BrkB YR821_0084 PF03466 LysR substrate binding domain YR821_0084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_0085 PF00375 Sodium:dicarboxylate symporter family YR821_0086 PF01053 Cys/Met metabolism PLP-dependent enzyme YR821_0089 PF09134 Invasin, domain 3 YR821_0089 PF07979 Intimin C-type lectin domain YR821_0089 PF11924 Inverse autotransporter, beta-domain YR821_0089 PF02369 Bacterial Ig-like domain (group 1) YR821_0090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YR821_0090 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_0091 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YR821_0092 PF01432 Peptidase family M3 YR821_0093 PF04445 Putative SAM-dependent methyltransferase YR821_0094 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YR821_0094 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YR821_0095 PF00582 Universal stress protein family YR821_0096 PF10625 Universal stress protein B (UspB) YR821_0097 PF01384 Phosphate transporter family YR821_0100 PF08721 TnsA endonuclease C terminal YR821_0100 PF08722 TnsA endonuclease N terminal YR821_0101 PF00665 Integrase core domain YR821_0102 PF11426 Tn7 transposition regulator TnsC YR821_0102 PF13401 AAA domain YR821_0107 PF01381 Helix-turn-helix YR821_0108 PF13610 DDE domain YR821_0109 PF00004 ATPase family associated with various cellular activities (AAA) YR821_0109 PF05362 Lon protease (S16) C-terminal proteolytic domain YR821_0109 PF02190 ATP-dependent protease La (LON) substrate-binding domain YR821_0112 PF01024 Colicin pore forming domain YR821_0112 PF11504 Colicin Ia YR821_0113 PF03526 Colicin E1 (microcin) immunity protein YR821_0114 PF01527 Transposase YR821_0115 PF13683 Integrase core domain YR821_0115 PF13276 HTH-like domain YR821_0118 PF08722 TnsA endonuclease N terminal YR821_0118 PF08721 TnsA endonuclease C terminal YR821_0128 PF01527 Transposase YR821_0133 PF01810 LysE type translocator YR821_0134 PF00583 Acetyltransferase (GNAT) family YR821_0137 PF17954 Quercetinase C-terminal cupin domain YR821_0137 PF02678 Pirin YR821_0138 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YR821_0138 PF00356 Bacterial regulatory proteins, lacI family YR821_0139 PF02447 GntP family permease YR821_0140 PF01202 Shikimate kinase YR821_0141 PF01914 MarC family integral membrane protein YR821_0142 PF01118 Semialdehyde dehydrogenase, NAD binding domain YR821_0142 PF02774 Semialdehyde dehydrogenase, dimerisation domain YR821_0143 PF07694 5TMR of 5TMR-LYT YR821_0143 PF06580 Histidine kinase YR821_0144 PF00128 Alpha amylase, catalytic domain YR821_0144 PF02806 Alpha amylase, C-terminal all-beta domain YR821_0144 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YR821_0145 PF00128 Alpha amylase, catalytic domain YR821_0145 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YR821_0145 PF18390 Glycogen debranching enzyme C-terminal domain YR821_0146 PF00483 Nucleotidyl transferase YR821_0147 PF08323 Starch synthase catalytic domain YR821_0147 PF00534 Glycosyl transferases group 1 YR821_0148 PF00343 Carbohydrate phosphorylase YR821_0150 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YR821_0150 PF01266 FAD dependent oxidoreductase YR821_0151 PF00455 DeoR C terminal sensor domain YR821_0151 PF08220 DeoR-like helix-turn-helix domain YR821_0152 PF01694 Rhomboid family YR821_0152 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YR821_0153 PF00581 Rhodanese-like domain YR821_0154 PF00196 Bacterial regulatory proteins, luxR family YR821_0154 PF17874 MalT-like TPR region YR821_0155 PF00343 Carbohydrate phosphorylase YR821_0156 PF02446 4-alpha-glucanotransferase YR821_0157 PF01521 Iron-sulphur cluster biosynthesis YR821_0157 PF01106 NifU-like domain YR821_0158 PF00156 Phosphoribosyl transferase domain YR821_0159 PF00561 alpha/beta hydrolase fold YR821_0161 PF09012 FeoC like transcriptional regulator YR821_0162 PF07664 Ferrous iron transport protein B C terminus YR821_0162 PF17910 FeoB cytosolic helical domain YR821_0162 PF07670 Nucleoside recognition YR821_0162 PF02421 Ferrous iron transport protein B YR821_0163 PF04023 FeoA domain YR821_0164 PF17674 HHH domain YR821_0164 PF00575 S1 RNA binding domain YR821_0164 PF09371 Tex-like protein N-terminal domain YR821_0164 PF16921 Tex protein YqgF-like domain YR821_0169 PF01272 Transcription elongation factor, GreA/GreB, C-term YR821_0169 PF03449 Transcription elongation factor, N-terminal YR821_0170 PF00072 Response regulator receiver domain YR821_0170 PF00486 Transcriptional regulatory protein, C terminal YR821_0171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0171 PF00672 HAMP domain YR821_0171 PF00512 His Kinase A (phospho-acceptor) domain YR821_0172 PF01293 Phosphoenolpyruvate carboxykinase YR821_0173 PF01430 Hsp33 protein YR821_0174 PF01479 S4 domain YR821_0175 PF13419 Haloacid dehalogenase-like hydrolase YR821_0176 PF07095 Intracellular growth attenuator protein IgaA YR821_0177 PF00293 NUDIX domain YR821_0178 PF00912 Transglycosylase YR821_0178 PF00905 Penicillin binding protein transpeptidase domain YR821_0178 PF17092 Penicillin-binding protein OB-like domain YR821_0183 PF00263 Bacterial type II and III secretion system protein YR821_0183 PF03958 Bacterial type II/III secretion system short domain YR821_0184 PF01202 Shikimate kinase YR821_0185 PF01761 3-dehydroquinate synthase YR821_0186 PF05036 Sporulation related domain YR821_0187 PF02086 D12 class N6 adenine-specific DNA methyltransferase YR821_0188 PF00834 Ribulose-phosphate 3 epimerase family YR821_0189 PF13419 Haloacid dehalogenase-like hydrolase YR821_0190 PF00579 tRNA synthetases class I (W and Y) YR821_0191 PF10414 Sirohaem synthase dimerisation region YR821_0191 PF14824 Sirohaem biosynthesis protein central YR821_0191 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YR821_0192 PF01226 Formate/nitrite transporter YR821_0193 PF13806 Rieske-like [2Fe-2S] domain YR821_0194 PF04324 BFD-like [2Fe-2S] binding domain YR821_0194 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YR821_0194 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YR821_0194 PF18267 Rubredoxin NAD+ reductase C-terminal domain YR821_0194 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_0195 PF07969 Amidohydrolase family YR821_0196 PF07690 Major Facilitator Superfamily YR821_0199 PF00356 Bacterial regulatory proteins, lacI family YR821_0200 PF11975 Family 4 glycosyl hydrolase C-terminal domain YR821_0200 PF02056 Family 4 glycosyl hydrolase YR821_0202 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YR821_0204 PF00117 Glutamine amidotransferase class-I YR821_0205 PF00202 Aminotransferase class-III YR821_0206 PF12805 FUSC-like inner membrane protein yccS YR821_0207 PF00027 Cyclic nucleotide-binding domain YR821_0207 PF13545 Crp-like helix-turn-helix domain YR821_0208 PF02566 OsmC-like protein YR821_0209 PF12323 Helix-turn-helix domain YR821_0209 PF07282 Putative transposase DNA-binding domain YR821_0209 PF01385 Probable transposase YR821_0212 PF00156 Phosphoribosyl transferase domain YR821_0213 PF00291 Pyridoxal-phosphate dependent enzyme YR821_0214 PF00485 Phosphoribulokinase / Uridine kinase family YR821_0215 PF06794 Uncharacterised protein family (UPF0270) YR821_0216 PF00561 alpha/beta hydrolase fold YR821_0217 PF01810 LysE type translocator YR821_0218 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YR821_0219 PF00535 Glycosyl transferase family 2 YR821_0220 PF12848 ABC transporter YR821_0220 PF00005 ABC transporter YR821_0221 PF02525 Flavodoxin-like fold YR821_0222 PF00999 Sodium/hydrogen exchanger family YR821_0222 PF02254 TrkA-N domain YR821_0223 PF09526 Probable metal-binding protein (DUF2387) YR821_0224 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YR821_0225 PF04102 SlyX YR821_0226 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YR821_0226 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YR821_0227 PF13309 HTH domain YR821_0227 PF08348 YheO-like PAS domain YR821_0228 PF02635 DsrE/DsrF-like family YR821_0229 PF02635 DsrE/DsrF-like family YR821_0230 PF04077 DsrH like protein YR821_0231 PF00164 Ribosomal protein S12/S23 YR821_0232 PF00177 Ribosomal protein S7p/S5e YR821_0233 PF14492 Elongation Factor G, domain II YR821_0233 PF03764 Elongation factor G, domain IV YR821_0233 PF00009 Elongation factor Tu GTP binding domain YR821_0233 PF03144 Elongation factor Tu domain 2 YR821_0233 PF00679 Elongation factor G C-terminus YR821_0234 PF03143 Elongation factor Tu C-terminal domain YR821_0234 PF00009 Elongation factor Tu GTP binding domain YR821_0234 PF03144 Elongation factor Tu domain 2 YR821_0235 PF04324 BFD-like [2Fe-2S] binding domain YR821_0236 PF00210 Ferritin-like domain YR821_0237 PF00338 Ribosomal protein S10p/S20e YR821_0238 PF00297 Ribosomal protein L3 YR821_0239 PF00573 Ribosomal protein L4/L1 family YR821_0240 PF00276 Ribosomal protein L23 YR821_0241 PF03947 Ribosomal Proteins L2, C-terminal domain YR821_0241 PF00181 Ribosomal Proteins L2, RNA binding domain YR821_0242 PF00203 Ribosomal protein S19 YR821_0243 PF00237 Ribosomal protein L22p/L17e YR821_0244 PF07650 KH domain YR821_0244 PF00189 Ribosomal protein S3, C-terminal domain YR821_0245 PF00252 Ribosomal protein L16p/L10e YR821_0246 PF00831 Ribosomal L29 protein YR821_0247 PF00366 Ribosomal protein S17 YR821_0248 PF00238 Ribosomal protein L14p/L23e YR821_0249 PF00467 KOW motif YR821_0249 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YR821_0250 PF00281 Ribosomal protein L5 YR821_0250 PF00673 ribosomal L5P family C-terminus YR821_0251 PF00253 Ribosomal protein S14p/S29e YR821_0252 PF00410 Ribosomal protein S8 YR821_0253 PF00347 Ribosomal protein L6 YR821_0254 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YR821_0255 PF03719 Ribosomal protein S5, C-terminal domain YR821_0255 PF00333 Ribosomal protein S5, N-terminal domain YR821_0256 PF00327 Ribosomal protein L30p/L7e YR821_0257 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YR821_0258 PF00344 SecY translocase YR821_0259 PF00444 Ribosomal protein L36 YR821_0260 PF00416 Ribosomal protein S13/S18 YR821_0261 PF00411 Ribosomal protein S11 YR821_0262 PF00163 Ribosomal protein S4/S9 N-terminal domain YR821_0262 PF01479 S4 domain YR821_0263 PF01000 RNA polymerase Rpb3/RpoA insert domain YR821_0263 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YR821_0263 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YR821_0264 PF01196 Ribosomal protein L17 YR821_0265 PF13411 MerR HTH family regulatory protein YR821_0266 PF03889 Alternative ribosome-rescue factor A YR821_0267 PF01741 Large-conductance mechanosensitive channel, MscL YR821_0268 PF02254 TrkA-N domain YR821_0268 PF02080 TrkA-C domain YR821_0269 PF01029 NusB family YR821_0269 PF01189 16S rRNA methyltransferase RsmB/F YR821_0270 PF02911 Formyl transferase, C-terminal domain YR821_0270 PF00551 Formyl transferase YR821_0271 PF01327 Polypeptide deformylase YR821_0272 PF17782 DprA winged helix domain YR821_0272 PF02481 DNA recombination-mediator protein A YR821_0273 PF04361 Protein of unknown function (DUF494) YR821_0274 PF01396 Topoisomerase DNA binding C4 zinc finger YR821_0275 PF01300 Telomere recombination YR821_0276 PF08501 Shikimate dehydrogenase substrate binding domain YR821_0276 PF01488 Shikimate / quinate 5-dehydrogenase YR821_0276 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YR821_0277 PF00132 Bacterial transferase hexapeptide (six repeats) YR821_0279 PF00474 Sodium:solute symporter family YR821_0280 PF04341 Protein of unknown function, DUF485 YR821_0281 PF16177 Acetyl-coenzyme A synthetase N-terminus YR821_0281 PF13193 AMP-binding enzyme C-terminal domain YR821_0281 PF00501 AMP-binding enzyme YR821_0282 PF00375 Sodium:dicarboxylate symporter family YR821_0283 PF04143 Sulphur transport YR821_0284 PF01206 Sulfurtransferase TusA YR821_0285 PF13276 HTH-like domain YR821_0285 PF00665 Integrase core domain YR821_0285 PF13333 Integrase core domain YR821_0286 PF01527 Transposase YR821_0287 PF02719 Polysaccharide biosynthesis protein YR821_0288 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YR821_0289 PF02350 UDP-N-acetylglucosamine 2-epimerase YR821_0290 PF03102 NeuB family YR821_0290 PF08666 SAF domain YR821_0292 PF00483 Nucleotidyl transferase YR821_0294 PF13472 GDSL-like Lipase/Acylhydrolase family YR821_0294 PF02348 Cytidylyltransferase YR821_0299 PF02540 NAD synthase YR821_0299 PF00795 Carbon-nitrogen hydrolase YR821_0300 PF00117 Glutamine amidotransferase class-I YR821_0301 PF00977 Histidine biosynthesis protein YR821_0302 PF02719 Polysaccharide biosynthesis protein YR821_0302 PF08485 Polysaccharide biosynthesis protein C-terminal YR821_0303 PF01370 NAD dependent epimerase/dehydratase family YR821_0304 PF02350 UDP-N-acetylglucosamine 2-epimerase YR821_0308 PF11412 Disulphide bond corrector protein DsbC YR821_0308 PF02683 Cytochrome C biogenesis protein transmembrane region YR821_0309 PF03091 CutA1 divalent ion tolerance protein YR821_0310 PF03605 Anaerobic c4-dicarboxylate membrane transporter YR821_0311 PF00206 Lyase YR821_0311 PF10415 Fumarase C C-terminus YR821_0312 PF04186 FxsA cytoplasmic membrane protein YR821_0313 PF00166 Chaperonin 10 Kd subunit YR821_0314 PF00118 TCP-1/cpn60 chaperonin family YR821_0315 PF13698 Domain of unknown function (DUF4156) YR821_0316 PF04055 Radical SAM superfamily YR821_0317 PF09285 Elongation factor P, C-terminal YR821_0317 PF08207 Elongation factor P (EF-P) KOW-like domain YR821_0317 PF01132 Elongation factor P (EF-P) OB domain YR821_0318 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YR821_0318 PF18416 N-acetylglucosamine binding protein domain 2 YR821_0319 PF00196 Bacterial regulatory proteins, luxR family YR821_0321 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YR821_0321 PF02753 Pili assembly chaperone PapD, C-terminal domain YR821_0322 PF13953 PapC C-terminal domain YR821_0322 PF13954 PapC N-terminal domain YR821_0322 PF00577 Outer membrane usher protein YR821_0323 PF00419 Fimbrial protein YR821_0325 PF00893 Small Multidrug Resistance protein YR821_0326 PF08212 Lipocalin-like domain YR821_0327 PF02313 Fumarate reductase subunit D YR821_0328 PF02300 Fumarate reductase subunit C YR821_0329 PF13085 2Fe-2S iron-sulfur cluster binding domain YR821_0329 PF13183 4Fe-4S dicluster domain YR821_0330 PF00890 FAD binding domain YR821_0330 PF02910 Fumarate reductase flavoprotein C-term YR821_0332 PF00152 tRNA synthetases class II (D, K and N) YR821_0333 PF12795 Mechanosensitive ion channel porin domain YR821_0333 PF12794 Mechanosensitive ion channel inner membrane domain 1 YR821_0333 PF00924 Mechanosensitive ion channel YR821_0334 PF02666 Phosphatidylserine decarboxylase YR821_0335 PF03193 RsgA GTPase YR821_0336 PF00929 Exonuclease YR821_0337 PF08331 Domain of unknown function (DUF1730) YR821_0338 PF01256 Carbohydrate kinase YR821_0338 PF03853 YjeF-related protein N-terminus YR821_0339 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YR821_0340 PF01520 N-acetylmuramoyl-L-alanine amidase YR821_0341 PF08676 MutL C terminal dimerisation domain YR821_0341 PF01119 DNA mismatch repair protein, C-terminal domain YR821_0343 PF17209 Hfq protein YR821_0344 PF01926 50S ribosome-binding GTPase YR821_0344 PF16360 GTP-binding GTPase Middle Region YR821_0344 PF13167 GTP-binding GTPase N-terminal YR821_0345 PF01145 SPFH domain / Band 7 family YR821_0345 PF12221 Bacterial membrane protein N terminal YR821_0346 PF01145 SPFH domain / Band 7 family YR821_0347 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YR821_0348 PF00709 Adenylosuccinate synthetase YR821_0349 PF02082 Transcriptional regulator YR821_0350 PF17876 Cold shock domain YR821_0350 PF08461 Ribonuclease R winged-helix domain YR821_0350 PF08206 Ribonuclease B OB domain YR821_0350 PF00773 RNB domain YR821_0350 PF00575 S1 RNA binding domain YR821_0351 PF00588 SpoU rRNA Methylase family YR821_0351 PF08032 RNA 2'-O ribose methyltransferase substrate binding YR821_0355 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YR821_0356 PF00577 Outer membrane usher protein YR821_0356 PF13954 PapC N-terminal domain YR821_0356 PF13953 PapC C-terminal domain YR821_0360 PF00326 Prolyl oligopeptidase family YR821_0362 PF01250 Ribosomal protein S6 YR821_0363 PF00436 Single-strand binding protein family YR821_0364 PF01084 Ribosomal protein S18 YR821_0365 PF03948 Ribosomal protein L9, C-terminal domain YR821_0365 PF01281 Ribosomal protein L9, N-terminal domain YR821_0366 PF04225 Opacity-associated protein A LysM-like domain YR821_0366 PF08525 Opacity-associated protein A N-terminal motif YR821_0367 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YR821_0367 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YR821_0368 PF04405 Domain of Unknown function (DUF542) YR821_0368 PF01814 Hemerythrin HHE cation binding domain YR821_0369 PF02872 5'-nucleotidase, C-terminal domain YR821_0369 PF00149 Calcineurin-like phosphoesterase YR821_0370 PF01527 Transposase YR821_0371 PF13333 Integrase core domain YR821_0371 PF00665 Integrase core domain YR821_0371 PF13276 HTH-like domain YR821_0372 PF00459 Inositol monophosphatase family YR821_0373 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YR821_0374 PF06526 Protein of unknown function (DUF1107) YR821_0375 PF01595 Cyclin M transmembrane N-terminal domain YR821_0375 PF03471 Transporter associated domain YR821_0375 PF00571 CBS domain YR821_0376 PF01625 Peptide methionine sulfoxide reductase YR821_0377 PF01103 Surface antigen YR821_0377 PF07244 Surface antigen variable number repeat YR821_0377 PF17243 POTRA domain TamA domain 1 YR821_0378 PF04357 TamB, inner membrane protein subunit of TAM complex YR821_0379 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YR821_0380 PF00719 Inorganic pyrophosphatase YR821_0381 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YR821_0382 PF01225 Mur ligase family, catalytic domain YR821_0382 PF02875 Mur ligase family, glutamate ligase domain YR821_0382 PF08245 Mur ligase middle domain YR821_0383 PF01316 Arginine repressor, DNA binding domain YR821_0383 PF02863 Arginine repressor, C-terminal domain YR821_0384 PF00056 lactate/malate dehydrogenase, NAD binding domain YR821_0384 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YR821_0385 PF13693 Winged helix-turn-helix DNA-binding YR821_0388 PF00348 Polyprenyl synthetase YR821_0389 PF00829 Ribosomal prokaryotic L21 protein YR821_0390 PF01016 Ribosomal L27 protein YR821_0391 PF00892 EamA-like transporter family YR821_0392 PF01018 GTP1/OBG YR821_0392 PF01926 50S ribosome-binding GTPase YR821_0393 PF00672 HAMP domain YR821_0393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0393 PF00512 His Kinase A (phospho-acceptor) domain YR821_0394 PF00486 Transcriptional regulatory protein, C terminal YR821_0394 PF00072 Response regulator receiver domain YR821_0395 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YR821_0396 PF01272 Transcription elongation factor, GreA/GreB, C-term YR821_0396 PF03449 Transcription elongation factor, N-terminal YR821_0397 PF01985 CRS1 / YhbY (CRM) domain YR821_0398 PF01728 FtsJ-like methyltransferase YR821_0399 PF01434 Peptidase family M41 YR821_0399 PF06480 FtsH Extracellular YR821_0399 PF00004 ATPase family associated with various cellular activities (AAA) YR821_0399 PF17862 AAA+ lid domain YR821_0400 PF00809 Pterin binding enzyme YR821_0401 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YR821_0401 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YR821_0401 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YR821_0401 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YR821_0402 PF03840 Preprotein translocase SecG subunit YR821_0403 PF02576 RimP N-terminal domain YR821_0403 PF17384 RimP C-terminal SH3 domain YR821_0404 PF13184 NusA-like KH domain YR821_0404 PF08529 NusA N-terminal domain YR821_0404 PF00575 S1 RNA binding domain YR821_0405 PF04760 Translation initiation factor IF-2, N-terminal region YR821_0405 PF00009 Elongation factor Tu GTP binding domain YR821_0405 PF03144 Elongation factor Tu domain 2 YR821_0405 PF11987 Translation-initiation factor 2 YR821_0405 PF08364 Bacterial translation initiation factor IF-2 associated region YR821_0406 PF02033 Ribosome-binding factor A YR821_0407 PF01509 TruB family pseudouridylate synthase (N terminal domain) YR821_0407 PF09157 Pseudouridine synthase II TruB, C-terminal YR821_0407 PF16198 tRNA pseudouridylate synthase B C-terminal domain YR821_0408 PF00312 Ribosomal protein S15 YR821_0409 PF01138 3' exoribonuclease family, domain 1 YR821_0409 PF00013 KH domain YR821_0409 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YR821_0409 PF03725 3' exoribonuclease family, domain 2 YR821_0409 PF00575 S1 RNA binding domain YR821_0410 PF07719 Tetratricopeptide repeat YR821_0410 PF13181 Tetratricopeptide repeat YR821_0411 PF03880 DbpA RNA binding domain YR821_0411 PF00270 DEAD/DEAH box helicase YR821_0411 PF12343 Cold shock protein DEAD box A YR821_0411 PF00271 Helicase conserved C-terminal domain YR821_0412 PF00296 Luciferase-like monooxygenase YR821_0414 PF03313 Serine dehydratase alpha chain YR821_0415 PF01136 Peptidase family U32 YR821_0416 PF01136 Peptidase family U32 YR821_0417 PF02036 SCP-2 sterol transfer family YR821_0418 PF13508 Acetyltransferase (GNAT) domain YR821_0419 PF01541 GIY-YIG catalytic domain YR821_0420 PF13520 Amino acid permease YR821_0421 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YR821_0421 PF01276 Orn/Lys/Arg decarboxylase, major domain YR821_0421 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YR821_0424 PF13460 NAD(P)H-binding YR821_0425 PF12706 Beta-lactamase superfamily domain YR821_0427 PF07969 Amidohydrolase family YR821_0428 PF00005 ABC transporter YR821_0429 PF00005 ABC transporter YR821_0430 PF06007 Phosphonate metabolism protein PhnJ YR821_0431 PF05861 Bacterial phosphonate metabolism protein (PhnI) YR821_0432 PF05845 Bacterial phosphonate metabolism protein (PhnH) YR821_0433 PF06754 Phosphonate metabolism protein PhnG YR821_0435 PF13597 Anaerobic ribonucleoside-triphosphate reductase YR821_0435 PF03477 ATP cone domain YR821_0436 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YR821_0436 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YR821_0437 PF06877 Regulator of ribonuclease activity B YR821_0438 PF00583 Acetyltransferase (GNAT) family YR821_0439 PF00133 tRNA synthetases class I (I, L, M and V) YR821_0439 PF10458 Valyl tRNA synthetase tRNA binding arm YR821_0439 PF08264 Anticodon-binding domain of tRNA YR821_0440 PF04364 DNA polymerase III chi subunit, HolC YR821_0441 PF00883 Cytosol aminopeptidase family, catalytic domain YR821_0441 PF02789 Cytosol aminopeptidase family, N-terminal domain YR821_0442 PF03739 Lipopolysaccharide export system permease LptF/LptG YR821_0443 PF03739 Lipopolysaccharide export system permease LptF/LptG YR821_0446 PF13166 AAA domain YR821_0449 PF01527 Transposase YR821_0450 PF13333 Integrase core domain YR821_0450 PF13276 HTH-like domain YR821_0450 PF00665 Integrase core domain YR821_0451 PF01344 Kelch motif YR821_0452 PF06178 Oligogalacturonate-specific porin protein (KdgM) YR821_0453 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YR821_0453 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain YR821_0453 PF02278 Polysaccharide lyase family 8, super-sandwich domain YR821_0456 PF02278 Polysaccharide lyase family 8, super-sandwich domain YR821_0456 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YR821_0456 PF09093 Lyase, catalytic YR821_0456 PF09092 Lyase, N terminal YR821_0457 PF00884 Sulfatase YR821_0459 PF00455 DeoR C terminal sensor domain YR821_0459 PF08220 DeoR-like helix-turn-helix domain YR821_0460 PF08013 Tagatose 6 phosphate kinase YR821_0461 PF01380 SIS domain YR821_0462 PF03830 PTS system sorbose subfamily IIB component YR821_0463 PF03609 PTS system sorbose-specific iic component YR821_0464 PF03613 PTS system mannose/fructose/sorbose family IID component YR821_0466 PF01979 Amidohydrolase family YR821_0467 PF04962 KduI/IolB family YR821_0469 PF07470 Glycosyl Hydrolase Family 88 YR821_0470 PF04055 Radical SAM superfamily YR821_0470 PF13186 Iron-sulfur cluster-binding domain YR821_0471 PF00884 Sulfatase YR821_0473 PF01116 Fructose-bisphosphate aldolase class-II YR821_0475 PF10696 Protein of unknown function (DUF2501) YR821_0477 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YR821_0480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YR821_0481 PF00873 AcrB/AcrD/AcrF family YR821_0482 PF00465 Iron-containing alcohol dehydrogenase YR821_0483 PF02733 Dak1 domain YR821_0484 PF02734 DAK2 domain YR821_0485 PF05524 PEP-utilising enzyme, N-terminal YR821_0485 PF00391 PEP-utilising enzyme, mobile domain YR821_0485 PF00381 PTS HPr component phosphorylation site YR821_0485 PF03610 PTS system fructose IIA component YR821_0486 PF02954 Bacterial regulatory protein, Fis family YR821_0486 PF00989 PAS fold YR821_0486 PF00158 Sigma-54 interaction domain YR821_0487 PF00990 Diguanylate cyclase, GGDEF domain YR821_0488 PF07256 Protein of unknown function (DUF1435) YR821_0489 PF08468 Methyltransferase small domain N-terminal YR821_0489 PF05175 Methyltransferase small domain YR821_0490 PF03603 DNA polymerase III psi subunit YR821_0491 PF00583 Acetyltransferase (GNAT) family YR821_0492 PF00009 Elongation factor Tu GTP binding domain YR821_0492 PF03144 Elongation factor Tu domain 2 YR821_0492 PF16658 Class II release factor RF3, C-terminal domain YR821_0493 PF04972 BON domain YR821_0494 PF07043 Protein of unknown function (DUF1328) YR821_0495 PF01734 Patatin-like phospholipase YR821_0496 PF01026 TatD related DNase YR821_0497 PF01773 Na+ dependent nucleoside transporter N-terminus YR821_0497 PF07662 Na+ dependent nucleoside transporter C-terminus YR821_0497 PF07670 Nucleoside recognition YR821_0499 PF01791 DeoC/LacD family aldolase YR821_0500 PF02885 Glycosyl transferase family, helical bundle domain YR821_0500 PF00591 Glycosyl transferase family, a/b domain YR821_0500 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YR821_0501 PF01676 Metalloenzyme superfamily YR821_0502 PF01048 Phosphorylase superfamily YR821_0503 PF10144 Bacterial virulence factor haemolysin YR821_0504 PF18429 Domain of unknown function (DUF5609) YR821_0505 PF18073 Rubredoxin metal binding domain YR821_0506 PF13521 AAA domain YR821_0506 PF01381 Helix-turn-helix YR821_0507 PF12848 ABC transporter YR821_0507 PF00005 ABC transporter YR821_0508 PF00691 OmpA family YR821_0511 PF00689 Cation transporting ATPase, C-terminus YR821_0511 PF00690 Cation transporter/ATPase, N-terminus YR821_0512 PF01464 Transglycosylase SLT domain YR821_0512 PF14718 Soluble lytic murein transglycosylase L domain YR821_0513 PF01371 Trp repressor protein YR821_0514 PF01931 Protein of unknown function DUF84 YR821_0515 PF00300 Histidine phosphatase superfamily (branch 1) YR821_0516 PF12833 Helix-turn-helix domain YR821_0516 PF06445 GyrI-like small molecule binding domain YR821_0517 PF05981 CreA protein YR821_0518 PF00486 Transcriptional regulatory protein, C terminal YR821_0518 PF00072 Response regulator receiver domain YR821_0519 PF03447 Homoserine dehydrogenase, NAD binding domain YR821_0519 PF00742 Homoserine dehydrogenase YR821_0519 PF00696 Amino acid kinase family YR821_0519 PF01842 ACT domain YR821_0519 PF13840 ACT domain YR821_0520 PF08544 GHMP kinases C terminal YR821_0520 PF00288 GHMP kinases N terminal domain YR821_0521 PF00291 Pyridoxal-phosphate dependent enzyme YR821_0521 PF14821 Threonine synthase N terminus YR821_0522 PF03883 Peroxide stress protein YaaA YR821_0524 PF00923 Transaldolase/Fructose-6-phosphate aldolase YR821_0525 PF00994 Probable molybdopterin binding domain YR821_0526 PF07690 Major Facilitator Superfamily YR821_0528 PF01184 GPR1/FUN34/yaaH family YR821_0530 PF00012 Hsp70 protein YR821_0531 PF01556 DnaJ C terminal domain YR821_0531 PF00684 DnaJ central domain YR821_0531 PF00226 DnaJ domain YR821_0532 PF06965 Na+/H+ antiporter 1 YR821_0533 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_0533 PF03466 LysR substrate binding domain YR821_0534 PF01649 Ribosomal protein S20 YR821_0535 PF06574 FAD synthetase YR821_0535 PF01687 Riboflavin kinase YR821_0536 PF06827 Zinc finger found in FPG and IleRS YR821_0536 PF08264 Anticodon-binding domain of tRNA YR821_0536 PF00133 tRNA synthetases class I (I, L, M and V) YR821_0537 PF01252 Signal peptidase (SPase) II YR821_0538 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YR821_0539 PF02401 LytB protein YR821_0540 PF05173 Dihydrodipicolinate reductase, C-terminus YR821_0540 PF01113 Dihydrodipicolinate reductase, N-terminus YR821_0541 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YR821_0541 PF00117 Glutamine amidotransferase class-I YR821_0542 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YR821_0542 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YR821_0542 PF02142 MGS-like domain YR821_0543 PF01810 LysE type translocator YR821_0544 PF06738 Putative threonine/serine exporter YR821_0545 PF12821 Threonine/Serine exporter, ThrE YR821_0546 PF00186 Dihydrofolate reductase YR821_0548 PF00149 Calcineurin-like phosphoesterase YR821_0549 PF04379 ApaG domain YR821_0550 PF00398 Ribosomal RNA adenine dimethylase YR821_0551 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YR821_0552 PF00639 PPIC-type PPIASE domain YR821_0552 PF09312 SurA N-terminal domain YR821_0553 PF03968 OstA-like protein YR821_0553 PF04453 LPS transport system D YR821_0554 PF05099 Tellurite resistance protein TerB YR821_0554 PF00226 DnaJ domain YR821_0555 PF00849 RNA pseudouridylate synthase YR821_0556 PF00176 SNF2 family N-terminal domain YR821_0556 PF18339 RapA N-terminal Tudor like domain 1 YR821_0556 PF18337 RapA N-terminal Tudor like domain YR821_0556 PF12137 RNA polymerase recycling family C-terminal YR821_0556 PF00271 Helicase conserved C-terminal domain YR821_0557 PF00136 DNA polymerase family B YR821_0557 PF03104 DNA polymerase family B, exonuclease domain YR821_0559 PF09335 SNARE associated Golgi protein YR821_0560 PF00005 ABC transporter YR821_0561 PF00528 Binding-protein-dependent transport system inner membrane component YR821_0563 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YR821_0563 PF12793 Sugar transport-related sRNA regulator N-term YR821_0566 PF07690 Major Facilitator Superfamily YR821_0567 PF00694 Aconitase C-terminal domain YR821_0568 PF00330 Aconitase family (aconitate hydratase) YR821_0569 PF00180 Isocitrate/isopropylmalate dehydrogenase YR821_0570 PF08502 LeuA allosteric (dimerisation) domain YR821_0570 PF00682 HMGL-like YR821_0573 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_0573 PF03466 LysR substrate binding domain YR821_0574 PF00501 AMP-binding enzyme YR821_0576 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YR821_0576 PF00205 Thiamine pyrophosphate enzyme, central domain YR821_0576 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YR821_0577 PF10369 Small subunit of acetolactate synthase YR821_0578 PF00356 Bacterial regulatory proteins, lacI family YR821_0578 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YR821_0579 PF01797 Transposase IS200 like YR821_0580 PF12323 Helix-turn-helix domain YR821_0580 PF07282 Putative transposase DNA-binding domain YR821_0580 PF01385 Probable transposase YR821_0581 PF06610 L-alanine exporter YR821_0582 PF02381 MraZ protein, putative antitoxin-like YR821_0583 PF01795 MraW methylase family YR821_0584 PF04999 Cell division protein FtsL YR821_0585 PF00905 Penicillin binding protein transpeptidase domain YR821_0585 PF03717 Penicillin-binding Protein dimerisation domain YR821_0586 PF08245 Mur ligase middle domain YR821_0586 PF02875 Mur ligase family, glutamate ligase domain YR821_0586 PF01225 Mur ligase family, catalytic domain YR821_0587 PF02875 Mur ligase family, glutamate ligase domain YR821_0587 PF01225 Mur ligase family, catalytic domain YR821_0587 PF08245 Mur ligase middle domain YR821_0588 PF00953 Glycosyl transferase family 4 YR821_0588 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YR821_0589 PF02875 Mur ligase family, glutamate ligase domain YR821_0589 PF08245 Mur ligase middle domain YR821_0590 PF01098 Cell cycle protein YR821_0591 PF04101 Glycosyltransferase family 28 C-terminal domain YR821_0591 PF03033 Glycosyltransferase family 28 N-terminal domain YR821_0592 PF01225 Mur ligase family, catalytic domain YR821_0592 PF02875 Mur ligase family, glutamate ligase domain YR821_0592 PF08245 Mur ligase middle domain YR821_0593 PF01820 D-ala D-ala ligase N-terminus YR821_0593 PF07478 D-ala D-ala ligase C-terminus YR821_0594 PF03799 Cell division protein FtsQ YR821_0594 PF08478 POTRA domain, FtsQ-type YR821_0595 PF02491 SHS2 domain inserted in FTSA YR821_0596 PF12327 FtsZ family, C-terminal domain YR821_0596 PF00091 Tubulin/FtsZ family, GTPase domain YR821_0597 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YR821_0599 PF06558 Secretion monitor precursor protein (SecM) YR821_0600 PF01043 SecA preprotein cross-linking domain YR821_0600 PF07516 SecA Wing and Scaffold domain YR821_0600 PF07517 SecA DEAD-like domain YR821_0600 PF02810 SEC-C motif YR821_0601 PF00293 NUDIX domain YR821_0602 PF03884 DNA gyrase inhibitor YacG YR821_0603 PF07072 Cell division protein YR821_0604 PF01121 Dephospho-CoA kinase YR821_0605 PF00478 IMP dehydrogenase / GMP reductase domain YR821_0606 PF00482 Type II secretion system (T2SS), protein F YR821_0607 PF00437 Type II/IV secretion system protein YR821_0607 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YR821_0608 PF07963 Prokaryotic N-terminal methylation motif YR821_0609 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YR821_0609 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YR821_0610 PF01510 N-acetylmuramoyl-L-alanine amidase YR821_0611 PF17113 Regulatory signalling modulator protein AmpE YR821_0612 PF00324 Amino acid permease YR821_0615 PF00392 Bacterial regulatory proteins, gntR family YR821_0615 PF07729 FCD domain YR821_0616 PF17831 Pyruvate dehydrogenase E1 component middle domain YR821_0616 PF00456 Transketolase, thiamine diphosphate binding domain YR821_0617 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YR821_0617 PF00364 Biotin-requiring enzyme YR821_0617 PF02817 e3 binding domain YR821_0618 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_0618 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YR821_0621 PF00330 Aconitase family (aconitate hydratase) YR821_0621 PF06434 Aconitate hydratase 2 N-terminus YR821_0621 PF11791 Aconitate B N-terminal domain YR821_0623 PF06062 Uncharacterised protein family (UPF0231) YR821_0624 PF00892 EamA-like transporter family YR821_0626 PF02675 S-adenosylmethionine decarboxylase YR821_0627 PF17284 Spermidine synthase tetramerisation domain YR821_0628 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YR821_0629 PF07732 Multicopper oxidase YR821_0629 PF10518 TAT (twin-arginine translocation) pathway signal sequence YR821_0629 PF00394 Multicopper oxidase YR821_0629 PF07731 Multicopper oxidase YR821_0630 PF00156 Phosphoribosyl transferase domain YR821_0631 PF00484 Carbonic anhydrase YR821_0632 PF00005 ABC transporter YR821_0633 PF01061 ABC-2 type transporter YR821_0635 PF01522 Polysaccharide deacetylase YR821_0636 PF02261 Aspartate decarboxylase YR821_0637 PF02569 Pantoate-beta-alanine ligase YR821_0638 PF02548 Ketopantoate hydroxymethyltransferase YR821_0639 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YR821_0640 PF01743 Poly A polymerase head domain YR821_0640 PF12626 Polymerase A arginine-rich C-terminus YR821_0640 PF12627 Probable RNA and SrmB- binding site of polymerase A YR821_0641 PF00749 tRNA synthetases class I (E and Q), catalytic domain YR821_0642 PF01258 Prokaryotic dksA/traR C4-type zinc finger YR821_0643 PF17746 SfsA N-terminal OB domain YR821_0643 PF03749 Sugar fermentation stimulation protein RE domain YR821_0644 PF02834 LigT like Phosphoesterase YR821_0645 PF00270 DEAD/DEAH box helicase YR821_0645 PF00271 Helicase conserved C-terminal domain YR821_0645 PF08482 ATP-dependent helicase C-terminal YR821_0645 PF04408 Helicase associated domain (HA2) YR821_0646 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YR821_0646 PF00912 Transglycosylase YR821_0646 PF00905 Penicillin binding protein transpeptidase domain YR821_0646 PF14814 Bifunctional transglycosylase second domain YR821_0647 PF00202 Aminotransferase class-III YR821_0648 PF00654 Voltage gated chloride channel YR821_0649 PF01521 Iron-sulphur cluster biosynthesis YR821_0650 PF03458 UPF0126 domain YR821_0651 PF01497 Periplasmic binding protein YR821_0652 PF01048 Phosphorylase superfamily YR821_0653 PF13286 Phosphohydrolase-associated domain YR821_0653 PF01966 HD domain YR821_0654 PF00595 PDZ domain YR821_0655 PF00072 Response regulator receiver domain YR821_0655 PF00512 His Kinase A (phospho-acceptor) domain YR821_0655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0655 PF00672 HAMP domain YR821_0655 PF01627 Hpt domain YR821_0655 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YR821_0656 PF05958 tRNA (Uracil-5-)-methyltransferase YR821_0656 PF01938 TRAM domain YR821_0657 PF13291 ACT domain YR821_0657 PF04607 Region found in RelA / SpoT proteins YR821_0657 PF02824 TGS domain YR821_0658 PF03819 MazG nucleotide pyrophosphohydrolase domain YR821_0659 PF06418 CTP synthase N-terminus YR821_0659 PF00117 Glutamine amidotransferase class-I YR821_0660 PF00113 Enolase, C-terminal TIM barrel domain YR821_0660 PF03952 Enolase, N-terminal domain YR821_0662 PF04055 Radical SAM superfamily YR821_0663 PF01242 6-pyruvoyl tetrahydropterin synthase YR821_0664 PF00667 FAD binding domain YR821_0664 PF00258 Flavodoxin YR821_0664 PF00175 Oxidoreductase NAD-binding domain YR821_0665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YR821_0665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YR821_0666 PF01507 Phosphoadenosine phosphosulfate reductase family YR821_0669 PF04389 Peptidase family M28 YR821_0670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YR821_0670 PF14824 Sirohaem biosynthesis protein central YR821_0670 PF10414 Sirohaem synthase dimerisation region YR821_0671 PF01507 Phosphoadenosine phosphosulfate reductase family YR821_0672 PF00009 Elongation factor Tu GTP binding domain YR821_0674 PF12084 Protein of unknown function (DUF3561) YR821_0676 PF04977 Septum formation initiator YR821_0677 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YR821_0678 PF02542 YgbB family YR821_0679 PF01142 tRNA pseudouridine synthase D (TruD) YR821_0680 PF01975 Survival protein SurE YR821_0683 PF01551 Peptidase family M23 YR821_0683 PF01476 LysM domain YR821_0684 PF04539 Sigma-70 region 3 YR821_0684 PF04545 Sigma-70, region 4 YR821_0684 PF04542 Sigma-70 region 2 YR821_0684 PF00140 Sigma-70 factor, region 1.2 YR821_0685 PF05188 MutS domain II YR821_0685 PF05192 MutS domain III YR821_0685 PF05190 MutS family domain IV YR821_0685 PF01624 MutS domain I YR821_0685 PF00488 MutS domain V YR821_0688 PF13276 HTH-like domain YR821_0688 PF13683 Integrase core domain YR821_0689 PF01527 Transposase YR821_0692 PF00501 AMP-binding enzyme YR821_0692 PF00668 Condensation domain YR821_0692 PF00550 Phosphopantetheine attachment site YR821_0692 PF13193 AMP-binding enzyme C-terminal domain YR821_0696 PF13276 HTH-like domain YR821_0696 PF13683 Integrase core domain YR821_0698 PF13276 HTH-like domain YR821_0698 PF00665 Integrase core domain YR821_0698 PF13333 Integrase core domain YR821_0700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0700 PF00512 His Kinase A (phospho-acceptor) domain YR821_0700 PF09308 LuxQ, periplasmic YR821_0700 PF00072 Response regulator receiver domain YR821_0701 PF00196 Bacterial regulatory proteins, luxR family YR821_0701 PF00072 Response regulator receiver domain YR821_0704 PF01464 Transglycosylase SLT domain YR821_0709 PF01514 Secretory protein of YscJ/FliF family YR821_0713 PF12833 Helix-turn-helix domain YR821_0714 PF00263 Bacterial type II and III secretion system protein YR821_0714 PF03958 Bacterial type II/III secretion system short domain YR821_0715 PF07201 HrpJ-like domain YR821_0716 PF00771 FHIPEP family YR821_0718 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YR821_0718 PF02874 ATP synthase alpha/beta family, beta-barrel domain YR821_0718 PF18269 T3SS EscN ATPase C-terminal domain YR821_0721 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YR821_0722 PF00813 FliP family YR821_0723 PF01313 Bacterial export proteins, family 3 YR821_0724 PF01311 Bacterial export proteins, family 1 YR821_0725 PF01312 FlhB HrpN YscU SpaS Family YR821_0726 PF07720 Tetratricopeptide repeat YR821_0732 PF00550 Phosphopantetheine attachment site YR821_0736 PF01527 Transposase YR821_0737 PF00665 Integrase core domain YR821_0737 PF13276 HTH-like domain YR821_0737 PF13333 Integrase core domain YR821_0739 PF18416 N-acetylglucosamine binding protein domain 2 YR821_0739 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YR821_0740 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YR821_0741 PF06750 Bacterial Peptidase A24 N-terminal domain YR821_0741 PF01478 Type IV leader peptidase family YR821_0743 PF05134 Type II secretion system (T2SS), protein L YR821_0743 PF12693 GspL periplasmic domain YR821_0744 PF03934 Type II secretion system (T2SS), protein K YR821_0745 PF11612 Type II secretion system (T2SS), protein J YR821_0745 PF07963 Prokaryotic N-terminal methylation motif YR821_0746 PF07963 Prokaryotic N-terminal methylation motif YR821_0746 PF02501 Type II secretion system (T2SS), protein I YR821_0747 PF07963 Prokaryotic N-terminal methylation motif YR821_0747 PF12019 Type II transport protein GspH YR821_0748 PF07963 Prokaryotic N-terminal methylation motif YR821_0748 PF08334 Type II secretion system (T2SS), protein G YR821_0749 PF00482 Type II secretion system (T2SS), protein F YR821_0750 PF00437 Type II/IV secretion system protein YR821_0751 PF00263 Bacterial type II and III secretion system protein YR821_0751 PF03958 Bacterial type II/III secretion system short domain YR821_0752 PF11356 Type II secretion system protein C YR821_0757 PF05681 Fumarate hydratase (Fumerase) YR821_0757 PF05683 Fumarase C-terminus YR821_0758 PF07690 Major Facilitator Superfamily YR821_0759 PF02464 Competence-damaged protein YR821_0760 PF00154 recA bacterial DNA recombination protein YR821_0761 PF02631 RecX family YR821_0762 PF02272 DHHA1 domain YR821_0762 PF01411 tRNA synthetases class II (A) YR821_0762 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YR821_0763 PF02599 Global regulator protein family YR821_0764 PF13419 Haloacid dehalogenase-like hydrolase YR821_0765 PF09335 SNARE associated Golgi protein YR821_0766 PF04262 Glutamate-cysteine ligase YR821_0767 PF02664 S-Ribosylhomocysteinase (LuxS) YR821_0768 PF03471 Transporter associated domain YR821_0768 PF00571 CBS domain YR821_0768 PF01595 Cyclin M transmembrane N-terminal domain YR821_0769 PF01578 Cytochrome C assembly protein YR821_0770 PF00448 SRP54-type protein, GTPase domain YR821_0770 PF02881 SRP54-type protein, helical bundle domain YR821_0770 PF02978 Signal peptide binding domain YR821_0771 PF00886 Ribosomal protein S16 YR821_0772 PF01782 RimM N-terminal domain YR821_0772 PF05239 PRC-barrel domain YR821_0773 PF01746 tRNA (Guanine-1)-methyltransferase YR821_0774 PF01245 Ribosomal protein L19 YR821_0775 PF04338 Protein of unknown function, DUF481 YR821_0776 PF03605 Anaerobic c4-dicarboxylate membrane transporter YR821_0778 PF04397 LytTr DNA-binding domain YR821_0778 PF00072 Response regulator receiver domain YR821_0779 PF00793 DAHP synthetase I family YR821_0780 PF02153 Prephenate dehydrogenase YR821_0780 PF01817 Chorismate mutase type II YR821_0781 PF01817 Chorismate mutase type II YR821_0781 PF00800 Prephenate dehydratase YR821_0782 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YR821_0783 PF13525 Outer membrane lipoprotein YR821_0784 PF00849 RNA pseudouridylate synthase YR821_0784 PF01479 S4 domain YR821_0785 PF02578 Multi-copper polyphenol oxidoreductase laccase YR821_0786 PF17871 AAA lid domain YR821_0786 PF10431 C-terminal, D2-small domain, of ClpB protein YR821_0786 PF00004 ATPase family associated with various cellular activities (AAA) YR821_0786 PF07724 AAA domain (Cdc48 subfamily) YR821_0786 PF02861 Clp amino terminal domain, pathogenicity island component YR821_0787 PF03372 Endonuclease/Exonuclease/phosphatase family YR821_0788 PF01476 LysM domain YR821_0788 PF01464 Transglycosylase SLT domain YR821_0789 PF16123 Hydroxyacylglutathione hydrolase C-terminus YR821_0789 PF00753 Metallo-beta-lactamase superfamily YR821_0790 PF08241 Methyltransferase domain YR821_0791 PF00075 RNase H YR821_0792 PF00929 Exonuclease YR821_0793 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YR821_0793 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YR821_0793 PF09317 Domain of unknown function (DUF1974) YR821_0794 PF13580 SIS domain YR821_0795 PF13230 Glutamine amidotransferases class-II YR821_0796 PF03734 L,D-transpeptidase catalytic domain YR821_0798 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YR821_0798 PF11973 NQRA C-terminal domain YR821_0799 PF03116 NQR2, RnfD, RnfE family YR821_0800 PF04205 FMN-binding domain YR821_0801 PF02508 Rnf-Nqr subunit, membrane protein YR821_0802 PF02508 Rnf-Nqr subunit, membrane protein YR821_0803 PF00970 Oxidoreductase FAD-binding domain YR821_0803 PF00111 2Fe-2S iron-sulfur cluster binding domain YR821_0803 PF00175 Oxidoreductase NAD-binding domain YR821_0804 PF02424 ApbE family YR821_0805 PF04400 (Na+)-NQR maturation NqrM YR821_0806 PF03009 Glycerophosphoryl diester phosphodiesterase family YR821_0807 PF00817 impB/mucB/samB family YR821_0807 PF11799 impB/mucB/samB family C-terminal domain YR821_0807 PF11798 IMS family HHH motif YR821_0808 PF07687 Peptidase dimerisation domain YR821_0808 PF01546 Peptidase family M20/M25/M40 YR821_0809 PF00156 Phosphoribosyl transferase domain YR821_0810 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) YR821_0811 PF07417 Sigma factor-binding transcriptional regulator Crl YR821_0812 PF00696 Amino acid kinase family YR821_0812 PF01472 PUA domain YR821_0813 PF00171 Aldehyde dehydrogenase family YR821_0814 PF07238 PilZ domain YR821_0814 PF07317 Flagellar regulator YcgR YR821_0818 PF01497 Periplasmic binding protein YR821_0819 PF07715 TonB-dependent Receptor Plug Domain YR821_0819 PF00593 TonB dependent receptor YR821_0820 PF01202 Shikimate kinase YR821_0825 PF07302 AroM protein YR821_0827 PF06865 Pyrimidine/purine nucleoside phosphorylase YR821_0828 PF04381 Putative exonuclease, RdgC YR821_0829 PF00480 ROK family YR821_0830 PF13476 AAA domain YR821_0831 PF00149 Calcineurin-like phosphoesterase YR821_0831 PF12320 Type 5 capsule protein repressor C-terminal domain YR821_0833 PF00486 Transcriptional regulatory protein, C terminal YR821_0833 PF00072 Response regulator receiver domain YR821_0834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0834 PF00512 His Kinase A (phospho-acceptor) domain YR821_0834 PF00989 PAS fold YR821_0834 PF11808 Phosphate regulon sensor protein PhoR YR821_0835 PF12849 PBP superfamily domain YR821_0837 PF05525 Branched-chain amino acid transport protein YR821_0838 PF00324 Amino acid permease YR821_0839 PF00128 Alpha amylase, catalytic domain YR821_0839 PF02903 Alpha amylase, N-terminal ig-like domain YR821_0841 PF10417 C-terminal domain of 1-Cys peroxiredoxin YR821_0841 PF00578 AhpC/TSA family YR821_0842 PF04336 Acyl carrier protein phosphodiesterase YR821_0843 PF02547 Queuosine biosynthesis protein YR821_0844 PF01702 Queuine tRNA-ribosyltransferase YR821_0845 PF02699 Preprotein translocase subunit YR821_0846 PF07549 SecD/SecF GG Motif YR821_0846 PF13721 SecD export protein N-terminal TM region YR821_0846 PF02355 Protein export membrane protein YR821_0847 PF07549 SecD/SecF GG Motif YR821_0847 PF02355 Protein export membrane protein YR821_0848 PF03477 ATP cone domain YR821_0849 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YR821_0849 PF01872 RibD C-terminal domain YR821_0850 PF00885 6,7-dimethyl-8-ribityllumazine synthase YR821_0851 PF01029 NusB family YR821_0852 PF00586 AIR synthase related protein, N-terminal domain YR821_0852 PF02769 AIR synthase related protein, C-terminal domain YR821_0853 PF04608 Phosphatidylglycerophosphatase A YR821_0854 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YR821_0854 PF02779 Transketolase, pyrimidine binding domain YR821_0854 PF02780 Transketolase, C-terminal domain YR821_0855 PF00348 Polyprenyl synthetase YR821_0856 PF02609 Exonuclease VII small subunit YR821_0857 PF02568 Thiamine biosynthesis protein (ThiI) YR821_0857 PF02926 THUMP domain YR821_0858 PF14532 Sigma-54 interaction domain YR821_0858 PF02954 Bacterial regulatory protein, Fis family YR821_0858 PF00072 Response regulator receiver domain YR821_0859 PF00672 HAMP domain YR821_0859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0859 PF00512 His Kinase A (phospho-acceptor) domain YR821_0861 PF07690 Major Facilitator Superfamily YR821_0862 PF01965 DJ-1/PfpI family YR821_0863 PF02558 Ketopantoate reductase PanE/ApbA YR821_0863 PF08546 Ketopantoate reductase PanE/ApbA C terminal YR821_0864 PF04461 Protein of unknown function (DUF520) YR821_0865 PF07690 Major Facilitator Superfamily YR821_0866 PF01040 UbiA prenyltransferase family YR821_0867 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YR821_0868 PF00510 Cytochrome c oxidase subunit III YR821_0869 PF00115 Cytochrome C and Quinol oxidase polypeptide I YR821_0870 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YR821_0870 PF06481 COX Aromatic Rich Motif YR821_0871 PF03502 Nucleoside-specific channel-forming protein, Tsx YR821_0872 PF07690 Major Facilitator Superfamily YR821_0873 PF03923 Uncharacterized lipoprotein YR821_0873 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YR821_0874 PF01722 BolA-like protein YR821_0877 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YR821_0877 PF05698 Bacterial trigger factor protein (TF) C-terminus YR821_0877 PF05697 Bacterial trigger factor protein (TF) YR821_0878 PF00574 Clp protease YR821_0879 PF07724 AAA domain (Cdc48 subfamily) YR821_0879 PF10431 C-terminal, D2-small domain, of ClpB protein YR821_0879 PF06689 ClpX C4-type zinc finger YR821_0880 PF00004 ATPase family associated with various cellular activities (AAA) YR821_0880 PF05362 Lon protease (S16) C-terminal proteolytic domain YR821_0880 PF02190 ATP-dependent protease La (LON) substrate-binding domain YR821_0881 PF00216 Bacterial DNA-binding protein YR821_0882 PF13145 PPIC-type PPIASE domain YR821_0885 PF06508 Queuosine biosynthesis protein QueC YR821_0886 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YR821_0886 PF12793 Sugar transport-related sRNA regulator N-term YR821_0889 PF01037 Lrp/AsnC ligand binding domain YR821_0889 PF13404 AsnC-type helix-turn-helix domain YR821_0890 PF00005 ABC transporter YR821_0890 PF00664 ABC transporter transmembrane region YR821_0891 PF00664 ABC transporter transmembrane region YR821_0891 PF00005 ABC transporter YR821_0892 PF00543 Nitrogen regulatory protein P-II YR821_0893 PF00909 Ammonium Transporter Family YR821_0895 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YR821_0897 PF05321 Haemolysin expression modulating protein YR821_0898 PF10757 Biofilm formation regulator YbaJ YR821_0901 PF00444 Ribosomal protein L36 YR821_0902 PF01197 Ribosomal protein L31 YR821_0903 PF00873 AcrB/AcrD/AcrF family YR821_0904 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YR821_0904 PF00529 HlyD membrane-fusion protein of T1SS YR821_0905 PF08361 MAATS-type transcriptional repressor, C-terminal region YR821_0905 PF00440 Bacterial regulatory proteins, tetR family YR821_0906 PF02635 DsrE/DsrF-like family YR821_0907 PF12795 Mechanosensitive ion channel porin domain YR821_0907 PF00924 Mechanosensitive ion channel YR821_0907 PF12794 Mechanosensitive ion channel inner membrane domain 1 YR821_0908 PF10689 Protein of unknown function (DUF2496) YR821_0910 PF04304 Protein of unknown function (DUF454) YR821_0911 PF00156 Phosphoribosyl transferase domain YR821_0912 PF01970 Tripartite tricarboxylate transporter TctA family YR821_0915 PF00072 Response regulator receiver domain YR821_0915 PF00486 Transcriptional regulatory protein, C terminal YR821_0916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0916 PF00512 His Kinase A (phospho-acceptor) domain YR821_0917 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YR821_0917 PF12170 DNA polymerase III tau subunit V interacting with alpha YR821_0917 PF12169 DNA polymerase III subunits gamma and tau domain III YR821_0918 PF02575 YbaB/EbfC DNA-binding family YR821_0919 PF02132 RecR protein YR821_0919 PF13662 Toprim domain YR821_0920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_0920 PF00183 Hsp90 protein YR821_0921 PF05191 Adenylate kinase, active site lid YR821_0922 PF00762 Ferrochelatase YR821_0923 PF02706 Chain length determinant protein YR821_0924 PF00294 pfkB family carbohydrate kinase YR821_0925 PF00294 pfkB family carbohydrate kinase YR821_0926 PF00999 Sodium/hydrogen exchanger family YR821_0926 PF02254 TrkA-N domain YR821_0929 PF02872 5'-nucleotidase, C-terminal domain YR821_0929 PF00149 Calcineurin-like phosphoesterase YR821_0930 PF04073 Aminoacyl-tRNA editing domain YR821_0931 PF01963 TraB family YR821_0932 PF00403 Heavy-metal-associated domain YR821_0933 PF13411 MerR HTH family regulatory protein YR821_0934 PF01957 NfeD-like C-terminal, partner-binding YR821_0935 PF01145 SPFH domain / Band 7 family YR821_0935 PF16200 C-terminal region of band_7 YR821_0936 PF00085 Thioredoxin YR821_0937 PF00106 short chain dehydrogenase YR821_0938 PF13472 GDSL-like Lipase/Acylhydrolase family YR821_0939 PF00005 ABC transporter YR821_0941 PF02222 ATP-grasp domain YR821_0941 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YR821_0942 PF00731 AIR carboxylase YR821_0944 PF00149 Calcineurin-like phosphoesterase YR821_0945 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YR821_0946 PF09190 DALR domain YR821_0946 PF01406 tRNA synthetases class I (C) catalytic domain YR821_0950 PF00419 Fimbrial protein YR821_0951 PF13953 PapC C-terminal domain YR821_0951 PF13954 PapC N-terminal domain YR821_0951 PF00577 Outer membrane usher protein YR821_0952 PF02753 Pili assembly chaperone PapD, C-terminal domain YR821_0952 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YR821_0959 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YR821_0959 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YR821_0960 PF13356 Arm DNA-binding domain YR821_0960 PF14659 Phage integrase, N-terminal SAM-like domain YR821_0960 PF00589 Phage integrase family YR821_0963 PF13195 Protein of unknown function (DUF4011) YR821_0963 PF13086 AAA domain YR821_0963 PF13087 AAA domain YR821_0964 PF11867 Domain of unknown function (DUF3387) YR821_0964 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YR821_0964 PF18766 SWI2/SNF2 ATPase YR821_0966 PF01527 Transposase YR821_0967 PF13333 Integrase core domain YR821_0967 PF13276 HTH-like domain YR821_0967 PF00665 Integrase core domain YR821_0968 PF01420 Type I restriction modification DNA specificity domain YR821_0969 PF02384 N-6 DNA Methylase YR821_0975 PF01926 50S ribosome-binding GTPase YR821_0979 PF06067 Domain of unknown function (DUF932) YR821_0980 PF03230 Antirestriction protein YR821_0981 PF04002 RadC-like JAB domain YR821_0983 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YR821_0984 PF06755 CbtA_toxin of type IV toxin-antitoxin system YR821_0988 PF01022 Bacterial regulatory protein, arsR family YR821_0989 PF02040 Arsenical pump membrane protein YR821_0990 PF03960 ArsC family YR821_0992 PF00501 AMP-binding enzyme YR821_0997 PF01292 Prokaryotic cytochrome b561 YR821_0999 PF00343 Carbohydrate phosphorylase YR821_1001 PF00486 Transcriptional regulatory protein, C terminal YR821_1001 PF00072 Response regulator receiver domain YR821_1003 PF00483 Nucleotidyl transferase YR821_1005 PF00535 Glycosyl transferase family 2 YR821_1005 PF03552 Cellulose synthase YR821_1005 PF07238 PilZ domain YR821_1009 PF02837 Glycosyl hydrolases family 2, sugar binding domain YR821_1009 PF00703 Glycosyl hydrolases family 2 YR821_1009 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YR821_1009 PF16355 Domain of unknown function (DUF4982) YR821_1010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_1010 PF00512 His Kinase A (phospho-acceptor) domain YR821_1010 PF01627 Hpt domain YR821_1010 PF00072 Response regulator receiver domain YR821_1010 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YR821_1010 PF00672 HAMP domain YR821_1011 PF00072 Response regulator receiver domain YR821_1011 PF00990 Diguanylate cyclase, GGDEF domain YR821_1012 PF00440 Bacterial regulatory proteins, tetR family YR821_1019 PF00196 Bacterial regulatory proteins, luxR family YR821_1020 PF00313 'Cold-shock' DNA-binding domain YR821_1021 PF00313 'Cold-shock' DNA-binding domain YR821_1022 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YR821_1024 PF00990 Diguanylate cyclase, GGDEF domain YR821_1024 PF05230 MASE2 domain YR821_1025 PF02416 mttA/Hcf106 family YR821_1026 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YR821_1026 PF04055 Radical SAM superfamily YR821_1027 PF03099 Biotin/lipoate A/B protein ligase family YR821_1028 PF04359 Protein of unknown function (DUF493) YR821_1029 PF07943 Penicillin-binding protein 5, C-terminal domain YR821_1029 PF00768 D-alanyl-D-alanine carboxypeptidase YR821_1030 PF03330 Lytic transglycolase YR821_1030 PF05036 Sporulation related domain YR821_1031 PF01098 Cell cycle protein YR821_1032 PF03717 Penicillin-binding Protein dimerisation domain YR821_1032 PF00905 Penicillin binding protein transpeptidase domain YR821_1033 PF02590 Predicted SPOUT methyltransferase YR821_1035 PF01467 Cytidylyltransferase-like YR821_1036 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YR821_1036 PF06144 DNA polymerase III, delta subunit YR821_1037 PF04390 Lipopolysaccharide-assembly YR821_1038 PF08264 Anticodon-binding domain of tRNA YR821_1038 PF00133 tRNA synthetases class I (I, L, M and V) YR821_1038 PF13603 Leucyl-tRNA synthetase, Domain 2 YR821_1040 PF07295 Zinc-ribbon containing domain YR821_1041 PF00005 ABC transporter YR821_1042 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1043 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1044 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_1046 PF00795 Carbon-nitrogen hydrolase YR821_1047 PF00571 CBS domain YR821_1047 PF03471 Transporter associated domain YR821_1048 PF02130 Uncharacterized protein family UPF0054 YR821_1049 PF02562 PhoH-like protein YR821_1051 PF00919 Uncharacterized protein family UPF0004 YR821_1051 PF01938 TRAM domain YR821_1051 PF04055 Radical SAM superfamily YR821_1052 PF01494 FAD binding domain YR821_1053 PF00733 Asparagine synthase YR821_1053 PF13537 Glutamine amidotransferase domain YR821_1054 PF13344 Haloacid dehalogenase-like hydrolase YR821_1055 PF00480 ROK family YR821_1055 PF01047 MarR family YR821_1056 PF01979 Amidohydrolase family YR821_1057 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YR821_1059 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YR821_1059 PF00367 phosphotransferase system, EIIB YR821_1059 PF02378 Phosphotransferase system, EIIC YR821_1060 PF00749 tRNA synthetases class I (E and Q), catalytic domain YR821_1060 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YR821_1061 PF03573 outer membrane porin, OprD family YR821_1062 PF13982 YbfN-like lipoprotein YR821_1063 PF02838 Glycosyl hydrolase family 20, domain 2 YR821_1063 PF00728 Glycosyl hydrolase family 20, catalytic domain YR821_1063 PF03173 Putative carbohydrate binding domain YR821_1063 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YR821_1064 PF01475 Ferric uptake regulator family YR821_1065 PF00258 Flavodoxin YR821_1066 PF02203 Tar ligand binding domain homologue YR821_1066 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YR821_1066 PF00672 HAMP domain YR821_1067 PF01402 Ribbon-helix-helix protein, copG family YR821_1069 PF12697 Alpha/beta hydrolase family YR821_1070 PF03925 SeqA protein C-terminal domain YR821_1070 PF17206 SeqA protein N-terminal domain YR821_1071 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YR821_1071 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YR821_1071 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YR821_1071 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YR821_1073 PF00486 Transcriptional regulatory protein, C terminal YR821_1073 PF00072 Response regulator receiver domain YR821_1074 PF00512 His Kinase A (phospho-acceptor) domain YR821_1074 PF13492 GAF domain YR821_1074 PF13493 Domain of unknown function (DUF4118) YR821_1074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_1074 PF02702 Osmosensitive K+ channel His kinase sensor domain YR821_1075 PF02669 K+-transporting ATPase, c chain YR821_1077 PF03814 Potassium-transporting ATPase A subunit YR821_1078 PF10725 Protein of unknown function (DUF2517) YR821_1079 PF08349 Protein of unknown function (DUF1722) YR821_1080 PF03441 FAD binding domain of DNA photolyase YR821_1080 PF00875 DNA photolyase YR821_1081 PF02112 cAMP phosphodiesterases class-II YR821_1082 PF01784 NIF3 (NGG1p interacting factor 3) YR821_1083 PF02682 Carboxyltransferase domain, subdomain C and D YR821_1084 PF02626 Carboxyltransferase domain, subdomain A and B YR821_1085 PF03746 LamB/YcsF family YR821_1088 PF01470 Pyroglutamyl peptidase YR821_1090 PF00285 Citrate synthase, C-terminal domain YR821_1091 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YR821_1092 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YR821_1093 PF00890 FAD binding domain YR821_1093 PF02910 Fumarate reductase flavoprotein C-term YR821_1094 PF13085 2Fe-2S iron-sulfur cluster binding domain YR821_1095 PF16870 2-oxoglutarate dehydrogenase C-terminal YR821_1095 PF16078 2-oxoglutarate dehydrogenase N-terminus YR821_1095 PF00676 Dehydrogenase E1 component YR821_1095 PF02779 Transketolase, pyrimidine binding domain YR821_1096 PF00364 Biotin-requiring enzyme YR821_1096 PF02817 e3 binding domain YR821_1096 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YR821_1097 PF08442 ATP-grasp domain YR821_1097 PF00549 CoA-ligase YR821_1098 PF02629 CoA binding domain YR821_1098 PF00549 CoA-ligase YR821_1099 PF00149 Calcineurin-like phosphoesterase YR821_1099 PF02872 5'-nucleotidase, C-terminal domain YR821_1100 PF01654 Cytochrome bd terminal oxidase subunit I YR821_1101 PF02322 Cytochrome bd terminal oxidase subunit II YR821_1102 PF08173 Membrane bound YbgT-like protein YR821_1103 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YR821_1104 PF03061 Thioesterase superfamily YR821_1105 PF01618 MotA/TolQ/ExbB proton channel family YR821_1106 PF02472 Biopolymer transport protein ExbD/TolR YR821_1107 PF06519 TolA C-terminal YR821_1107 PF06519 TolA C-terminal YR821_1108 PF04052 TolB amino-terminal domain YR821_1108 PF07676 WD40-like Beta Propeller Repeat YR821_1109 PF00691 OmpA family YR821_1110 PF16331 TolA binding protein trimerisation YR821_1110 PF13174 Tetratricopeptide repeat YR821_1112 PF02445 Quinolinate synthetase A protein YR821_1113 PF04973 Nicotinamide mononucleotide transporter YR821_1114 PF01627 Hpt domain YR821_1114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_1114 PF00512 His Kinase A (phospho-acceptor) domain YR821_1114 PF00989 PAS fold YR821_1114 PF00072 Response regulator receiver domain YR821_1114 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_1115 PF00196 Bacterial regulatory proteins, luxR family YR821_1115 PF00072 Response regulator receiver domain YR821_1116 PF00793 DAHP synthetase I family YR821_1117 PF00300 Histidine phosphatase superfamily (branch 1) YR821_1119 PF01263 Aldose 1-epimerase YR821_1120 PF08544 GHMP kinases C terminal YR821_1120 PF00288 GHMP kinases N terminal domain YR821_1120 PF10509 Galactokinase galactose-binding signature YR821_1121 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YR821_1121 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YR821_1122 PF16363 GDP-mannose 4,6 dehydratase YR821_1124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_1124 PF03459 TOBE domain YR821_1125 PF10766 Multidrug efflux pump-associated protein AcrZ YR821_1127 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1128 PF00005 ABC transporter YR821_1128 PF03459 TOBE domain YR821_1130 PF10282 Lactonase, 7-bladed beta-propeller YR821_1131 PF00202 Aminotransferase class-III YR821_1132 PF06968 Biotin and Thiamin Synthesis associated domain YR821_1132 PF04055 Radical SAM superfamily YR821_1133 PF00155 Aminotransferase class I and II YR821_1134 PF08241 Methyltransferase domain YR821_1136 PF00005 ABC transporter YR821_1137 PF04851 Type III restriction enzyme, res subunit YR821_1137 PF00271 Helicase conserved C-terminal domain YR821_1137 PF02151 UvrB/uvrC motif YR821_1137 PF12344 Ultra-violet resistance protein B YR821_1137 PF17757 UvrB interaction domain YR821_1138 PF09905 DNA-binding protein VF530 YR821_1141 PF01032 FecCD transport family YR821_1142 PF00005 ABC transporter YR821_1143 PF01933 Uncharacterised protein family UPF0052 YR821_1145 PF06463 Molybdenum Cofactor Synthesis C YR821_1145 PF04055 Radical SAM superfamily YR821_1146 PF01967 MoaC family YR821_1147 PF02597 ThiS family YR821_1148 PF02391 MoaE protein YR821_1149 PF01027 Inhibitor of apoptosis-promoting Bax1 YR821_1152 PF00005 ABC transporter YR821_1153 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YR821_1154 PF09209 Tetracyclin repressor-like, C-terminal domain YR821_1154 PF00440 Bacterial regulatory proteins, tetR family YR821_1155 PF00270 DEAD/DEAH box helicase YR821_1155 PF00271 Helicase conserved C-terminal domain YR821_1156 PF01207 Dihydrouridine synthase (Dus) YR821_1158 PF00768 D-alanyl-D-alanine carboxypeptidase YR821_1160 PF09330 D-lactate dehydrogenase, membrane binding YR821_1160 PF01565 FAD binding domain YR821_1161 PF01928 CYTH domain YR821_1162 PF01844 HNH endonuclease YR821_1164 PF04226 Transglycosylase associated protein YR821_1165 PF00005 ABC transporter YR821_1167 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1168 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1169 PF07308 Protein of unknown function (DUF1456) YR821_1171 PF00581 Rhodanese-like domain YR821_1172 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YR821_1173 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1174 PF00005 ABC transporter YR821_1175 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1176 PF13520 Amino acid permease YR821_1177 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YR821_1177 PF01276 Orn/Lys/Arg decarboxylase, major domain YR821_1177 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YR821_1179 PF00892 EamA-like transporter family YR821_1180 PF00267 Gram-negative porin YR821_1181 PF13307 Helicase C-terminal domain YR821_1181 PF06733 DEAD_2 YR821_1182 PF02885 Glycosyl transferase family, helical bundle domain YR821_1183 PF05971 RNA methyltransferase YR821_1184 PF00005 ABC transporter YR821_1185 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1186 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_1187 PF00210 Ferritin-like domain YR821_1188 PF13649 Methyltransferase domain YR821_1189 PF00892 EamA-like transporter family YR821_1190 PF13505 Outer membrane protein beta-barrel domain YR821_1191 PF00571 CBS domain YR821_1191 PF03448 MgtE intracellular N domain YR821_1191 PF01769 Divalent cation transporter YR821_1193 PF16916 Dimerisation domain of Zinc Transporter YR821_1193 PF01545 Cation efflux family YR821_1194 PF00005 ABC transporter YR821_1194 PF12848 ABC transporter YR821_1195 PF00899 ThiF family YR821_1196 PF00994 Probable molybdopterin binding domain YR821_1196 PF03453 MoeA N-terminal region (domain I and II) YR821_1196 PF03454 MoeA C-terminal region (domain IV) YR821_1198 PF00756 Putative esterase YR821_1199 PF08240 Alcohol dehydrogenase GroES-like domain YR821_1199 PF00107 Zinc-binding dehydrogenase YR821_1200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_1200 PF03466 LysR substrate binding domain YR821_1201 PF06779 Uncharacterised MFS-type transporter YbfB YR821_1202 PF01227 GTP cyclohydrolase I YR821_1203 PF04235 Protein of unknown function (DUF418) YR821_1204 PF00356 Bacterial regulatory proteins, lacI family YR821_1206 PF13407 Periplasmic binding protein domain YR821_1207 PF00005 ABC transporter YR821_1208 PF02653 Branched-chain amino acid transport system / permease component YR821_1209 PF02698 DUF218 domain YR821_1210 PF00390 Malic enzyme, N-terminal domain YR821_1210 PF03949 Malic enzyme, NAD binding domain YR821_1212 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_1212 PF03466 LysR substrate binding domain YR821_1213 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YR821_1213 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YR821_1214 PF04172 LrgB-like family YR821_1215 PF03788 LrgA family YR821_1218 PF09334 tRNA synthetases class I (M) YR821_1218 PF01588 Putative tRNA binding domain YR821_1219 PF10609 NUBPL iron-transfer P-loop NTPase YR821_1220 PF00485 Phosphoribulokinase / Uridine kinase family YR821_1221 PF00692 dUTPase YR821_1222 PF05170 AsmA family YR821_1223 PF03606 C4-dicarboxylate anaerobic carrier YR821_1224 PF03471 Transporter associated domain YR821_1224 PF00571 CBS domain YR821_1224 PF03741 Integral membrane protein TerC family YR821_1225 PF00483 Nucleotidyl transferase YR821_1226 PF00483 Nucleotidyl transferase YR821_1228 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YR821_1228 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YR821_1229 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YR821_1229 PF01502 Phosphoribosyl-AMP cyclohydrolase YR821_1230 PF00977 Histidine biosynthesis protein YR821_1231 PF00977 Histidine biosynthesis protein YR821_1232 PF00117 Glutamine amidotransferase class-I YR821_1233 PF00475 Imidazoleglycerol-phosphate dehydratase YR821_1234 PF00155 Aminotransferase class I and II YR821_1235 PF00815 Histidinol dehydrogenase YR821_1236 PF08029 HisG, C-terminal domain YR821_1236 PF01634 ATP phosphoribosyltransferase YR821_1238 PF01370 NAD dependent epimerase/dehydratase family YR821_1239 PF00043 Glutathione S-transferase, C-terminal domain YR821_1239 PF13417 Glutathione S-transferase, N-terminal domain YR821_1245 PF01053 Cys/Met metabolism PLP-dependent enzyme YR821_1246 PF00571 CBS domain YR821_1246 PF00291 Pyridoxal-phosphate dependent enzyme YR821_1247 PF00768 D-alanyl-D-alanine carboxypeptidase YR821_1247 PF07943 Penicillin-binding protein 5, C-terminal domain YR821_1248 PF03313 Serine dehydratase alpha chain YR821_1248 PF03315 Serine dehydratase beta chain YR821_1250 PF08220 DeoR-like helix-turn-helix domain YR821_1250 PF00455 DeoR C terminal sensor domain YR821_1251 PF01791 DeoC/LacD family aldolase YR821_1252 PF01569 PAP2 superfamily YR821_1256 PF16452 Bacteriophage CI repressor C-terminal domain YR821_1256 PF07022 Bacteriophage CI repressor helix-turn-helix domain YR821_1258 PF06892 Phage regulatory protein CII (CP76) YR821_1264 PF02080 TrkA-C domain YR821_1264 PF06826 Predicted Permease Membrane Region YR821_1266 PF00462 Glutaredoxin YR821_1268 PF07214 Protein of unknown function (DUF1418) YR821_1269 PF10722 Putative bacterial sensory transduction regulator YR821_1270 PF13416 Bacterial extracellular solute-binding protein YR821_1271 PF00005 ABC transporter YR821_1271 PF08402 TOBE domain YR821_1272 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1274 PF10767 Protein of unknown function (DUF2593) YR821_1275 PF05958 tRNA (Uracil-5-)-methyltransferase YR821_1276 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_1278 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1279 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1280 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_1281 PF00005 ABC transporter YR821_1282 PF12883 Protein of unknown function (DUF3828) YR821_1283 PF01906 Putative heavy-metal-binding YR821_1284 PF01370 NAD dependent epimerase/dehydratase family YR821_1285 PF11066 Protein of unknown function (DUF2867) YR821_1285 PF13460 NAD(P)H-binding YR821_1286 PF01212 Beta-eliminating lyase YR821_1288 PF00970 Oxidoreductase FAD-binding domain YR821_1288 PF00111 2Fe-2S iron-sulfur cluster binding domain YR821_1288 PF00175 Oxidoreductase NAD-binding domain YR821_1289 PF03063 Prismane/CO dehydrogenase family YR821_1290 PF03956 Lysine exporter LysO YR821_1291 PF11398 Protein of unknown function (DUF2813) YR821_1292 PF04393 Protein of unknown function (DUF535) YR821_1293 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YR821_1294 PF00005 ABC transporter YR821_1294 PF02687 FtsX-like permease family YR821_1294 PF12704 MacB-like periplasmic core domain YR821_1295 PF00313 'Cold-shock' DNA-binding domain YR821_1296 PF02617 ATP-dependent Clp protease adaptor protein ClpS YR821_1297 PF02861 Clp amino terminal domain, pathogenicity island component YR821_1297 PF17871 AAA lid domain YR821_1297 PF10431 C-terminal, D2-small domain, of ClpB protein YR821_1297 PF00004 ATPase family associated with various cellular activities (AAA) YR821_1297 PF07724 AAA domain (Cdc48 subfamily) YR821_1298 PF01176 Translation initiation factor 1A / IF-1 YR821_1299 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YR821_1300 PF00664 ABC transporter transmembrane region YR821_1300 PF00005 ABC transporter YR821_1301 PF00664 ABC transporter transmembrane region YR821_1301 PF00005 ABC transporter YR821_1302 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_1304 PF01037 Lrp/AsnC ligand binding domain YR821_1305 PF09397 Ftsk gamma domain YR821_1305 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YR821_1305 PF17854 FtsK alpha domain YR821_1305 PF01580 FtsK/SpoIIIE family YR821_1306 PF03548 Outer membrane lipoprotein carrier protein LolA YR821_1307 PF12002 MgsA AAA+ ATPase C terminal YR821_1307 PF00004 ATPase family associated with various cellular activities (AAA) YR821_1307 PF16193 AAA C-terminal domain YR821_1308 PF02403 Seryl-tRNA synthetase N-terminal domain YR821_1308 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YR821_1309 PF07690 Major Facilitator Superfamily YR821_1310 PF04055 Radical SAM superfamily YR821_1311 PF01228 Glycine radical YR821_1311 PF02901 Pyruvate formate lyase-like YR821_1312 PF01226 Formate/nitrite transporter YR821_1313 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YR821_1313 PF18381 YcaO cyclodehydratase C-terminal domain YR821_1314 PF17763 Glutaminase/Asparaginase C-terminal domain YR821_1314 PF00710 Asparaginase, N-terminal YR821_1315 PF00266 Aminotransferase class-V YR821_1316 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YR821_1317 PF02224 Cytidylate kinase YR821_1318 PF00575 S1 RNA binding domain YR821_1319 PF00216 Bacterial DNA-binding protein YR821_1320 PF00753 Metallo-beta-lactamase superfamily YR821_1320 PF03772 Competence protein YR821_1321 PF00664 ABC transporter transmembrane region YR821_1321 PF00005 ABC transporter YR821_1322 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YR821_1323 PF07063 Domain of unknown function (DUF1338) YR821_1324 PF00313 'Cold-shock' DNA-binding domain YR821_1325 PF00313 'Cold-shock' DNA-binding domain YR821_1326 PF03966 Trm112p-like protein YR821_1327 PF02348 Cytidylyltransferase YR821_1328 PF01636 Phosphotransferase enzyme family YR821_1329 PF02698 DUF218 domain YR821_1330 PF13847 Methyltransferase domain YR821_1331 PF17192 MukF middle domain YR821_1331 PF03882 MukF winged-helix domain YR821_1331 PF17193 MukF C-terminal domain YR821_1332 PF04288 MukE-like family YR821_1333 PF16330 MukB hinge domain YR821_1333 PF04310 MukB N-terminal YR821_1334 PF01471 Putative peptidoglycan binding domain YR821_1334 PF03734 L,D-transpeptidase catalytic domain YR821_1335 PF05951 Bacterial protein of unknown function (DUF882) YR821_1336 PF00753 Metallo-beta-lactamase superfamily YR821_1337 PF00155 Aminotransferase class I and II YR821_1338 PF00267 Gram-negative porin YR821_1339 PF01336 OB-fold nucleic acid binding domain YR821_1339 PF00152 tRNA synthetases class II (D, K and N) YR821_1340 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YR821_1340 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YR821_1341 PF01433 Peptidase family M1 domain YR821_1341 PF11940 Domain of unknown function (DUF3458) Ig-like fold YR821_1341 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YR821_1342 PF01180 Dihydroorotate dehydrogenase YR821_1343 PF07126 Cell-division protein ZapC YR821_1345 PF10672 S-adenosylmethionine-dependent methyltransferase YR821_1345 PF02926 THUMP domain YR821_1345 PF01170 Putative RNA methylase family UPF0020 YR821_1346 PF16326 ABC transporter C-terminal domain YR821_1346 PF12848 ABC transporter YR821_1346 PF00005 ABC transporter YR821_1347 PF04403 Paraquat-inducible protein A YR821_1348 PF02470 MlaD protein YR821_1349 PF03886 ABC-type transport auxiliary lipoprotein component YR821_1350 PF04957 Ribosome modulation factor YR821_1351 PF07977 FabA-like domain YR821_1352 PF13654 AAA domain YR821_1352 PF05362 Lon protease (S16) C-terminal proteolytic domain YR821_1353 PF06303 MatP N-terminal domain YR821_1353 PF17414 MatP C-terminal ribbon-helix-helix domain YR821_1354 PF00691 OmpA family YR821_1354 PF01389 OmpA-like transmembrane domain YR821_1355 PF03846 Cell division inhibitor SulA YR821_1356 PF04994 TfoX C-terminal domain YR821_1356 PF04993 TfoX N-terminal domain YR821_1357 PF12805 FUSC-like inner membrane protein yccS YR821_1358 PF03733 Inner membrane component domain YR821_1359 PF13361 UvrD-like helicase C-terminal domain YR821_1359 PF12462 DNA helicase IV / RNA helicase N terminal YR821_1359 PF00580 UvrD/REP helicase N-terminal domain YR821_1360 PF02142 MGS-like domain YR821_1361 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YR821_1362 PF13380 CoA binding domain YR821_1363 PF08755 Hemimethylated DNA-binding protein YccV like YR821_1364 PF10672 S-adenosylmethionine-dependent methyltransferase YR821_1364 PF17785 PUA-like domain YR821_1365 PF00708 Acylphosphatase YR821_1366 PF04358 DsrC like protein YR821_1368 PF00484 Carbonic anhydrase YR821_1370 PF03471 Transporter associated domain YR821_1370 PF02080 TrkA-C domain YR821_1370 PF00999 Sodium/hydrogen exchanger family YR821_1372 PF01757 Acyltransferase family YR821_1373 PF04349 Periplasmic glucan biosynthesis protein, MdoG YR821_1374 PF00535 Glycosyl transferase family 2 YR821_1376 PF00854 POT family YR821_1378 PF03279 Bacterial lipid A biosynthesis acyltransferase YR821_1380 PF12368 Rhodanase C-terminal YR821_1380 PF17773 UPF0176 acylphosphatase like domain YR821_1380 PF00581 Rhodanese-like domain YR821_1381 PF01594 AI-2E family transporter YR821_1382 PF00196 Bacterial regulatory proteins, luxR family YR821_1383 PF01266 FAD dependent oxidoreductase YR821_1384 PF13991 BssS protein family YR821_1385 PF06183 DinI-like family YR821_1386 PF01979 Amidohydrolase family YR821_1387 PF03992 Antibiotic biosynthesis monooxygenase YR821_1389 PF12111 Polyribonucleotide phosphorylase C terminal YR821_1389 PF10150 Ribonuclease E/G family YR821_1389 PF00575 S1 RNA binding domain YR821_1391 PF00849 RNA pseudouridylate synthase YR821_1391 PF01479 S4 domain YR821_1392 PF02545 Maf-like protein YR821_1393 PF02620 Large ribosomal RNA subunit accumulation protein YceD YR821_1394 PF01783 Ribosomal L32p protein family YR821_1395 PF02504 Fatty acid synthesis protein YR821_1396 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YR821_1396 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YR821_1397 PF00698 Acyl transferase domain YR821_1399 PF00550 Phosphopantetheine attachment site YR821_1400 PF02801 Beta-ketoacyl synthase, C-terminal domain YR821_1400 PF00109 Beta-ketoacyl synthase, N-terminal domain YR821_1401 PF01063 Amino-transferase class IV YR821_1402 PF02618 YceG-like family YR821_1403 PF02223 Thymidylate kinase YR821_1404 PF09115 DNA polymerase III, delta subunit, C terminal YR821_1405 PF01026 TatD related DNase YR821_1406 PF02378 Phosphotransferase system, EIIC YR821_1406 PF00367 phosphotransferase system, EIIB YR821_1408 PF01230 HIT domain YR821_1409 PF07233 Protein of unknown function (DUF1425) YR821_1410 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YR821_1410 PF13036 Peptidoglycan-synthase activator LpoB YR821_1411 PF01636 Phosphotransferase enzyme family YR821_1412 PF00933 Glycosyl hydrolase family 3 N terminal domain YR821_1413 PF05728 Uncharacterised protein family (UPF0227) YR821_1414 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_1415 PF05433 Glycine zipper 2TM domain YR821_1416 PF00271 Helicase conserved C-terminal domain YR821_1416 PF00270 DEAD/DEAH box helicase YR821_1416 PF02559 CarD-like/TRCF domain YR821_1416 PF03461 TRCF domain YR821_1416 PF17757 UvrB interaction domain YR821_1417 PF02687 FtsX-like permease family YR821_1417 PF12704 MacB-like periplasmic core domain YR821_1418 PF00005 ABC transporter YR821_1419 PF02687 FtsX-like permease family YR821_1419 PF12704 MacB-like periplasmic core domain YR821_1420 PF00480 ROK family YR821_1421 PF02146 Sir2 family YR821_1422 PF07687 Peptidase dimerisation domain YR821_1422 PF01546 Peptidase family M20/M25/M40 YR821_1423 PF08007 Cupin superfamily protein YR821_1424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_1424 PF08918 PhoQ Sensor YR821_1425 PF00072 Response regulator receiver domain YR821_1425 PF00486 Transcriptional regulatory protein, C terminal YR821_1427 PF08328 Adenylosuccinate lyase C-terminal YR821_1427 PF00206 Lyase YR821_1428 PF04356 Protein of unknown function (DUF489) YR821_1431 PF00293 NUDIX domain YR821_1432 PF00849 RNA pseudouridylate synthase YR821_1433 PF00180 Isocitrate/isopropylmalate dehydrogenase YR821_1434 PF03472 Autoinducer binding domain YR821_1434 PF00196 Bacterial regulatory proteins, luxR family YR821_1435 PF00765 Autoinducer synthase YR821_1437 PF00232 Glycosyl hydrolase family 1 YR821_1439 PF01432 Peptidase family M3 YR821_1440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YR821_1440 PF00672 HAMP domain YR821_1440 PF02203 Tar ligand binding domain homologue YR821_1442 PF03390 2-hydroxycarboxylate transporter family YR821_1443 PF00072 Response regulator receiver domain YR821_1444 PF00989 PAS fold YR821_1444 PF17203 Single cache domain 3 YR821_1444 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain YR821_1444 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_1445 PF00939 Sodium:sulfate symporter transmembrane region YR821_1446 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YR821_1446 PF00413 Matrixin YR821_1446 PF08548 Peptidase M10 serralysin C terminal YR821_1447 PF02974 Protease inhibitor Inh YR821_1448 PF00005 ABC transporter YR821_1448 PF00664 ABC transporter transmembrane region YR821_1449 PF00529 HlyD membrane-fusion protein of T1SS YR821_1450 PF02321 Outer membrane efflux protein YR821_1455 PF02311 AraC-like ligand binding domain YR821_1455 PF12833 Helix-turn-helix domain YR821_1457 PF02562 PhoH-like protein YR821_1458 PF01699 Sodium/calcium exchanger protein YR821_1459 PF08021 Siderophore-interacting FAD-binding domain YR821_1459 PF04954 Siderophore-interacting protein YR821_1460 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YR821_1460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_1460 PF07730 Histidine kinase YR821_1460 PF00672 HAMP domain YR821_1462 PF02322 Cytochrome bd terminal oxidase subunit II YR821_1463 PF01654 Cytochrome bd terminal oxidase subunit I YR821_1465 PF00155 Aminotransferase class I and II YR821_1465 PF00392 Bacterial regulatory proteins, gntR family YR821_1466 PF00202 Aminotransferase class-III YR821_1467 PF04958 Arginine N-succinyltransferase beta subunit YR821_1468 PF00171 Aldehyde dehydrogenase family YR821_1469 PF04996 Succinylarginine dihydrolase YR821_1470 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YR821_1471 PF00267 Gram-negative porin YR821_1473 PF01979 Amidohydrolase family YR821_1474 PF07702 UTRA domain YR821_1474 PF00392 Bacterial regulatory proteins, gntR family YR821_1475 PF01979 Amidohydrolase family YR821_1476 PF05962 HutD YR821_1477 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_1477 PF03466 LysR substrate binding domain YR821_1479 PF03824 High-affinity nickel-transport protein YR821_1480 PF07503 HypF finger YR821_1480 PF00708 Acylphosphatase YR821_1480 PF01300 Telomere recombination YR821_1480 PF17788 HypF Kae1-like domain YR821_1481 PF01568 Molydopterin dinucleotide binding domain YR821_1481 PF00384 Molybdopterin oxidoreductase YR821_1481 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YR821_1482 PF13247 4Fe-4S dicluster domain YR821_1482 PF12800 4Fe-4S binding domain YR821_1483 PF01750 Hydrogenase maturation protease YR821_1484 PF07450 Formate hydrogenlyase maturation protein HycH YR821_1485 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YR821_1486 PF12838 4Fe-4S dicluster domain YR821_1487 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YR821_1487 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YR821_1487 PF00374 Nickel-dependent hydrogenase YR821_1488 PF00146 NADH dehydrogenase YR821_1490 PF13247 4Fe-4S dicluster domain YR821_1491 PF11046 Transcriptional repressor of hyc and hyp operons YR821_1492 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YR821_1493 PF02492 CobW/HypB/UreG, nucleotide-binding domain YR821_1494 PF01455 HupF/HypC family YR821_1495 PF01924 Hydrogenase formation hypA family YR821_1496 PF00586 AIR synthase related protein, N-terminal domain YR821_1496 PF02769 AIR synthase related protein, C-terminal domain YR821_1497 PF01527 Transposase YR821_1498 PF13333 Integrase core domain YR821_1498 PF00665 Integrase core domain YR821_1498 PF13276 HTH-like domain YR821_1499 PF01590 GAF domain YR821_1499 PF02954 Bacterial regulatory protein, Fis family YR821_1499 PF00158 Sigma-54 interaction domain YR821_1501 PF13954 PapC N-terminal domain YR821_1501 PF00577 Outer membrane usher protein YR821_1502 PF02753 Pili assembly chaperone PapD, C-terminal domain YR821_1502 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YR821_1506 PF12833 Helix-turn-helix domain YR821_1507 PF01926 50S ribosome-binding GTPase YR821_1507 PF06071 Protein of unknown function (DUF933) YR821_1509 PF01195 Peptidyl-tRNA hydrolase YR821_1510 PF10762 Protein of unknown function (DUF2583) YR821_1512 PF14572 Phosphoribosyl synthetase-associated domain YR821_1512 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YR821_1513 PF08544 GHMP kinases C terminal YR821_1513 PF00288 GHMP kinases N terminal domain YR821_1514 PF03550 Outer membrane lipoprotein LolB YR821_1516 PF01488 Shikimate / quinate 5-dehydrogenase YR821_1516 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YR821_1516 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YR821_1517 PF00472 RF-1 domain YR821_1517 PF03462 PCRF domain YR821_1518 PF17827 PrmC N-terminal domain YR821_1518 PF13847 Methyltransferase domain YR821_1519 PF04247 Invasion gene expression up-regulator, SirB YR821_1520 PF13369 Transglutaminase-like superfamily YR821_1521 PF00793 DAHP synthetase I family YR821_1522 PF00916 Sulfate permease family YR821_1522 PF01740 STAS domain YR821_1523 PF00990 Diguanylate cyclase, GGDEF domain YR821_1524 PF03009 Glycerophosphoryl diester phosphodiesterase family YR821_1525 PF00854 POT family YR821_1526 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YR821_1527 PF02811 PHP domain YR821_1528 PF02613 Nitrate reductase delta subunit YR821_1529 PF07273 Protein of unknown function (DUF1439) YR821_1531 PF07690 Major Facilitator Superfamily YR821_1533 PF13302 Acetyltransferase (GNAT) domain YR821_1534 PF04337 Protein of unknown function, DUF480 YR821_1536 PF03023 Lipid II flippase MurJ YR821_1537 PF08479 POTRA domain, ShlB-type YR821_1537 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YR821_1537 PF17287 POTRA domain YR821_1538 PF13332 Hemagglutinin repeat YR821_1538 PF05860 haemagglutination activity domain YR821_1541 PF03485 Arginyl tRNA synthetase N terminal domain YR821_1541 PF05746 DALR anticodon binding domain YR821_1541 PF00750 tRNA synthetases class I (R) YR821_1542 PF06185 YecM protein YR821_1543 PF03932 CutC family YR821_1544 PF08003 Protein of unknown function (DUF1698) YR821_1545 PF13649 Methyltransferase domain YR821_1546 PF01124 MAPEG family YR821_1548 PF01904 Protein of unknown function DUF72 YR821_1550 PF02938 GAD domain YR821_1550 PF00152 tRNA synthetases class II (D, K and N) YR821_1550 PF01336 OB-fold nucleic acid binding domain YR821_1551 PF00293 NUDIX domain YR821_1552 PF01709 Transcriptional regulator YR821_1553 PF02075 Crossover junction endodeoxyribonuclease RuvC YR821_1554 PF01330 RuvA N terminal domain YR821_1554 PF07499 RuvA, C-terminal domain YR821_1555 PF05496 Holliday junction DNA helicase RuvB P-loop domain YR821_1555 PF05491 RuvB C-terminal winged helix domain YR821_1555 PF17864 RuvB AAA lid domain YR821_1556 PF00854 POT family YR821_1557 PF00950 ABC 3 transport family YR821_1558 PF00005 ABC transporter YR821_1559 PF01297 Zinc-uptake complex component A periplasmic YR821_1560 PF01476 LysM domain YR821_1560 PF01551 Peptidase family M23 YR821_1560 PF08525 Opacity-associated protein A N-terminal motif YR821_1561 PF03279 Bacterial lipid A biosynthesis acyltransferase YR821_1562 PF02887 Pyruvate kinase, alpha/beta domain YR821_1562 PF00224 Pyruvate kinase, barrel domain YR821_1563 PF01418 Helix-turn-helix domain, rpiR family YR821_1563 PF01380 SIS domain YR821_1564 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YR821_1564 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YR821_1565 PF01081 KDPG and KHG aldolase YR821_1566 PF00893 Small Multidrug Resistance protein YR821_1567 PF00893 Small Multidrug Resistance protein YR821_1568 PF01042 Endoribonuclease L-PSP YR821_1569 PF13307 Helicase C-terminal domain YR821_1569 PF04851 Type III restriction enzyme, res subunit YR821_1570 PF00814 Glycoprotease family YR821_1571 PF03843 Outer membrane lipoprotein Slp family YR821_1573 PF00501 AMP-binding enzyme YR821_1573 PF13193 AMP-binding enzyme C-terminal domain YR821_1574 PF01612 3'-5' exonuclease YR821_1574 PF00570 HRDC domain YR821_1575 PF03776 Septum formation topological specificity factor MinE YR821_1576 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YR821_1577 PF05209 Septum formation inhibitor MinC, N-terminal domain YR821_1577 PF03775 Septum formation inhibitor MinC, C-terminal domain YR821_1579 PF05166 YcgL domain YR821_1580 PF01557 Fumarylacetoacetate (FAA) hydrolase family YR821_1581 PF03692 Putative zinc- or iron-chelating domain YR821_1584 PF02600 Disulfide bond formation protein DsbB YR821_1586 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YR821_1587 PF00392 Bacterial regulatory proteins, gntR family YR821_1587 PF07840 FadR C-terminal domain YR821_1588 PF04293 SpoVR like protein YR821_1589 PF01266 FAD dependent oxidoreductase YR821_1590 PF01168 Alanine racemase, N-terminal domain YR821_1590 PF00842 Alanine racemase, C-terminal domain YR821_1591 PF07690 Major Facilitator Superfamily YR821_1593 PF13426 PAS domain YR821_1593 PF00990 Diguanylate cyclase, GGDEF domain YR821_1593 PF00563 EAL domain YR821_1594 PF03466 LysR substrate binding domain YR821_1594 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_1595 PF03306 Alpha-acetolactate decarboxylase YR821_1596 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YR821_1596 PF00205 Thiamine pyrophosphate enzyme, central domain YR821_1596 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YR821_1597 PF04285 Protein of unknown function (DUF444) YR821_1598 PF08298 PrkA AAA domain YR821_1598 PF06798 PrkA serine protein kinase C-terminal domain YR821_1600 PF06629 MltA-interacting protein MipA YR821_1601 PF00884 Sulfatase YR821_1602 PF01263 Aldose 1-epimerase YR821_1603 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YR821_1603 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YR821_1604 PF01641 SelR domain YR821_1605 PF07023 Protein of unknown function (DUF1315) YR821_1606 PF00857 Isochorismatase family YR821_1607 PF00710 Asparaginase, N-terminal YR821_1607 PF17763 Glutaminase/Asparaginase C-terminal domain YR821_1608 PF01343 Peptidase family S49 YR821_1609 PF00881 Nitroreductase family YR821_1610 PF00586 AIR synthase related protein, N-terminal domain YR821_1610 PF02769 AIR synthase related protein, C-terminal domain YR821_1611 PF01131 DNA topoisomerase YR821_1611 PF01751 Toprim domain YR821_1612 PF07383 Protein of unknown function (DUF1496) YR821_1613 PF00293 NUDIX domain YR821_1614 PF03372 Endonuclease/Exonuclease/phosphatase family YR821_1617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_1617 PF03466 LysR substrate binding domain YR821_1619 PF01842 ACT domain YR821_1619 PF00551 Formyl transferase YR821_1620 PF02810 SEC-C motif YR821_1621 PF01527 Transposase YR821_1622 PF13333 Integrase core domain YR821_1622 PF13276 HTH-like domain YR821_1622 PF00665 Integrase core domain YR821_1623 PF01734 Patatin-like phospholipase YR821_1624 PF00072 Response regulator receiver domain YR821_1625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YR821_1625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YR821_1625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YR821_1626 PF00816 H-NS histone family YR821_1628 PF00265 Thymidine kinase YR821_1630 PF00171 Aldehyde dehydrogenase family YR821_1630 PF00465 Iron-containing alcohol dehydrogenase YR821_1632 PF01914 MarC family integral membrane protein YR821_1633 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YR821_1634 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YR821_1635 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1636 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1636 PF12911 N-terminal TM domain of oligopeptide transport permease C YR821_1637 PF00005 ABC transporter YR821_1637 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YR821_1638 PF00005 ABC transporter YR821_1638 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YR821_1639 PF04269 Protein of unknown function, DUF440 YR821_1640 PF13091 PLD-like domain YR821_1640 PF13396 Phospholipase_D-nuclease N-terminal YR821_1646 PF03795 YCII-related domain YR821_1649 PF00486 Transcriptional regulatory protein, C terminal YR821_1651 PF02753 Pili assembly chaperone PapD, C-terminal domain YR821_1651 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YR821_1652 PF13953 PapC C-terminal domain YR821_1652 PF13954 PapC N-terminal domain YR821_1652 PF00577 Outer membrane usher protein YR821_1656 PF03544 Gram-negative bacterial TonB protein C-terminal YR821_1657 PF03061 Thioesterase superfamily YR821_1658 PF04279 Intracellular septation protein A YR821_1659 PF01740 STAS domain YR821_1659 PF00916 Sulfate permease family YR821_1661 PF03692 Putative zinc- or iron-chelating domain YR821_1662 PF03922 OmpW family YR821_1664 PF00290 Tryptophan synthase alpha chain YR821_1665 PF00291 Pyridoxal-phosphate dependent enzyme YR821_1666 PF00218 Indole-3-glycerol phosphate synthase YR821_1666 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YR821_1667 PF02885 Glycosyl transferase family, helical bundle domain YR821_1667 PF00591 Glycosyl transferase family, a/b domain YR821_1668 PF00117 Glutamine amidotransferase class-I YR821_1669 PF04715 Anthranilate synthase component I, N terminal region YR821_1669 PF00425 chorismate binding enzyme YR821_1670 PF02811 PHP domain YR821_1671 PF01300 Telomere recombination YR821_1672 PF01479 S4 domain YR821_1672 PF00849 RNA pseudouridylate synthase YR821_1673 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YR821_1674 PF00106 short chain dehydrogenase YR821_1675 PF00106 short chain dehydrogenase YR821_1676 PF01343 Peptidase family S49 YR821_1676 PF08496 Peptidase family S49 N-terminal YR821_1677 PF10692 Protein of unknown function (DUF2498) YR821_1678 PF08272 Topoisomerase I zinc-ribbon-like YR821_1678 PF01131 DNA topoisomerase YR821_1678 PF01751 Toprim domain YR821_1678 PF01396 Topoisomerase DNA binding C4 zinc finger YR821_1679 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_1679 PF03466 LysR substrate binding domain YR821_1683 PF00330 Aconitase family (aconitate hydratase) YR821_1683 PF00694 Aconitase C-terminal domain YR821_1684 PF00925 GTP cyclohydrolase II YR821_1685 PF01569 PAP2 superfamily YR821_1686 PF06305 Lipopolysaccharide assembly protein A domain YR821_1687 PF18073 Rubredoxin metal binding domain YR821_1689 PF07338 Protein of unknown function (DUF1471) YR821_1691 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YR821_1692 PF01253 Translation initiation factor SUI1 YR821_1693 PF05433 Glycine zipper 2TM domain YR821_1694 PF00923 Transaldolase/Fructose-6-phosphate aldolase YR821_1695 PF00563 EAL domain YR821_1695 PF00990 Diguanylate cyclase, GGDEF domain YR821_1695 PF05231 MASE1 YR821_1695 PF08447 PAS fold YR821_1695 PF08448 PAS fold YR821_1695 PF13426 PAS domain YR821_1696 PF00575 S1 RNA binding domain YR821_1696 PF00773 RNB domain YR821_1696 PF08206 Ribonuclease B OB domain YR821_1697 PF10576 Iron-sulfur binding domain of endonuclease III YR821_1697 PF00633 Helix-hairpin-helix motif YR821_1697 PF00730 HhH-GPD superfamily base excision DNA repair protein YR821_1698 PF02508 Rnf-Nqr subunit, membrane protein YR821_1699 PF04205 FMN-binding domain YR821_1700 PF03116 NQR2, RnfD, RnfE family YR821_1701 PF06445 GyrI-like small molecule binding domain YR821_1701 PF12833 Helix-turn-helix domain YR821_1702 PF10531 SLBB domain YR821_1702 PF13375 RnfC Barrel sandwich hybrid domain YR821_1702 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YR821_1702 PF13237 4Fe-4S dicluster domain YR821_1703 PF04060 Putative Fe-S cluster YR821_1704 PF02508 Rnf-Nqr subunit, membrane protein YR821_1705 PF10754 Protein of unknown function (DUF2569) YR821_1706 PF01268 Formate--tetrahydrofolate ligase YR821_1707 PF09313 Domain of unknown function (DUF1971) YR821_1707 PF03848 Tellurite resistance protein TehB YR821_1708 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YR821_1708 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YR821_1709 PF13593 SBF-like CPA transporter family (DUF4137) YR821_1710 PF00962 Adenosine/AMP deaminase YR821_1711 PF06097 Bacterial protein of unknown function (DUF945) YR821_1712 PF01238 Phosphomannose isomerase type I YR821_1714 PF10415 Fumarase C C-terminus YR821_1714 PF00206 Lyase YR821_1715 PF05472 DNA replication terminus site-binding protein (Ter protein) YR821_1718 PF01526 Tn3 transposase DDE domain YR821_1718 PF13700 Domain of unknown function (DUF4158) YR821_1719 PF02796 Helix-turn-helix domain of resolvase YR821_1719 PF00239 Resolvase, N terminal domain YR821_1722 PF00654 Voltage gated chloride channel YR821_1724 PF06649 Protein of unknown function (DUF1161) YR821_1725 PF06932 Protein of unknown function (DUF1283) YR821_1726 PF02694 Uncharacterised BCR, YnfA/UPF0060 family YR821_1727 PF00106 short chain dehydrogenase YR821_1728 PF01510 N-acetylmuramoyl-L-alanine amidase YR821_1733 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YR821_1733 PF01048 Phosphorylase superfamily YR821_1739 PF00753 Metallo-beta-lactamase superfamily YR821_1739 PF14864 Alkyl sulfatase C-terminal YR821_1739 PF14863 Alkyl sulfatase dimerisation YR821_1743 PF13419 Haloacid dehalogenase-like hydrolase YR821_1747 PF06445 GyrI-like small molecule binding domain YR821_1749 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YR821_1749 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YR821_1750 PF00027 Cyclic nucleotide-binding domain YR821_1750 PF13545 Crp-like helix-turn-helix domain YR821_1751 PF00582 Universal stress protein family YR821_1753 PF00455 DeoR C terminal sensor domain YR821_1753 PF08220 DeoR-like helix-turn-helix domain YR821_1754 PF03611 PTS system sugar-specific permease component YR821_1755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YR821_1756 PF00596 Class II Aldolase and Adducin N-terminal domain YR821_1757 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YR821_1758 PF01261 Xylose isomerase-like TIM barrel YR821_1759 PF02233 NAD(P) transhydrogenase beta subunit YR821_1760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YR821_1760 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YR821_1760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YR821_1761 PF07338 Protein of unknown function (DUF1471) YR821_1762 PF13520 Amino acid permease YR821_1764 PF00072 Response regulator receiver domain YR821_1764 PF00486 Transcriptional regulatory protein, C terminal YR821_1765 PF00672 HAMP domain YR821_1765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_1765 PF00512 His Kinase A (phospho-acceptor) domain YR821_1766 PF00080 Copper/zinc superoxide dismutase (SODC) YR821_1767 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YR821_1769 PF12833 Helix-turn-helix domain YR821_1770 PF01161 Phosphatidylethanolamine-binding protein YR821_1773 PF00089 Trypsin YR821_1774 PF11898 Domain of unknown function (DUF3418) YR821_1774 PF00270 DEAD/DEAH box helicase YR821_1774 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YR821_1774 PF04408 Helicase associated domain (HA2) YR821_1774 PF00271 Helicase conserved C-terminal domain YR821_1775 PF02525 Flavodoxin-like fold YR821_1776 PF07027 Protein of unknown function (DUF1318) YR821_1777 PF13617 YnbE-like lipoprotein YR821_1779 PF11739 Dicarboxylate transport YR821_1780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YR821_1780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YR821_1781 PF03724 META domain YR821_1782 PF03891 Domain of unknown function (DUF333) YR821_1783 PF02308 MgtC family YR821_1784 PF00893 Small Multidrug Resistance protein YR821_1785 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YR821_1785 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YR821_1785 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YR821_1785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YR821_1785 PF10371 Domain of unknown function YR821_1786 PF01171 PP-loop family YR821_1787 PF01544 CorA-like Mg2+ transporter protein YR821_1788 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YR821_1789 PF00246 Zinc carboxypeptidase YR821_1790 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YR821_1790 PF13378 Enolase C-terminal domain-like YR821_1791 PF08534 Redoxin YR821_1792 PF18024 Helix-turn-helix domain YR821_1792 PF00158 Sigma-54 interaction domain YR821_1793 PF09722 Protein of unknown function (DUF2384) YR821_1794 PF08808 RES domain YR821_1795 PF05128 Domain of unknown function (DUF697) YR821_1796 PF04317 YcjX-like family, DUF463 YR821_1798 PF04024 PspC domain YR821_1799 PF06667 Phage shock protein B YR821_1800 PF04012 PspA/IM30 family YR821_1804 PF02917 Pertussis toxin, subunit 1 YR821_1805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YR821_1806 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1807 PF12911 N-terminal TM domain of oligopeptide transport permease C YR821_1807 PF00528 Binding-protein-dependent transport system inner membrane component YR821_1808 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YR821_1808 PF00005 ABC transporter YR821_1809 PF00005 ABC transporter YR821_1811 PF00854 POT family YR821_1814 PF01556 DnaJ C terminal domain YR821_1814 PF00226 DnaJ domain YR821_1816 PF04893 Yip1 domain YR821_1818 PF11656 YjbD family (DUF3811) YR821_1819 PF02798 Glutathione S-transferase, N-terminal domain YR821_1819 PF00043 Glutathione S-transferase, C-terminal domain YR821_1820 PF08543 Phosphomethylpyrimidine kinase YR821_1821 PF00579 tRNA synthetases class I (W and Y) YR821_1821 PF01479 S4 domain YR821_1822 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YR821_1822 PF01243 Pyridoxamine 5'-phosphate oxidase YR821_1823 PF03702 Anhydro-N-acetylmuramic acid kinase YR821_1824 PF05433 Glycine zipper 2TM domain YR821_1825 PF01047 MarR family YR821_1828 PF00248 Aldo/keto reductase family YR821_1829 PF06945 Protein of unknown function (DUF1289) YR821_1830 PF08019 Phosphoethanolamine transferase EptA/EptB YR821_1830 PF00884 Sulfatase YR821_1831 PF16925 Tetracyclin repressor-like, C-terminal domain YR821_1831 PF00440 Bacterial regulatory proteins, tetR family YR821_1832 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YR821_1834 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YR821_1835 PF00929 Exonuclease YR821_1836 PF00462 Glutaredoxin YR821_1838 PF00877 NlpC/P60 family YR821_1839 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YR821_1839 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YR821_1840 PF00356 Bacterial regulatory proteins, lacI family YR821_1841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_1841 PF03466 LysR substrate binding domain YR821_1842 PF07690 Major Facilitator Superfamily YR821_1844 PF00677 Lumazine binding domain YR821_1845 PF01554 MatE YR821_1847 PF00224 Pyruvate kinase, barrel domain YR821_1847 PF02887 Pyruvate kinase, alpha/beta domain YR821_1848 PF04728 Lipoprotein leucine-zipper YR821_1849 PF17969 L,D-transpeptidase C-terminal domain YR821_1849 PF01476 LysM domain YR821_1849 PF03734 L,D-transpeptidase catalytic domain YR821_1850 PF02657 Fe-S metabolism associated domain YR821_1851 PF00266 Aminotransferase class-V YR821_1852 PF01458 Uncharacterized protein family (UPF0051) YR821_1853 PF00005 ABC transporter YR821_1854 PF01458 Uncharacterized protein family (UPF0051) YR821_1855 PF01521 Iron-sulphur cluster biosynthesis YR821_1857 PF03061 Thioesterase superfamily YR821_1858 PF01565 FAD binding domain YR821_1858 PF02913 FAD linked oxidases, C-terminal domain YR821_1858 PF13183 4Fe-4S dicluster domain YR821_1859 PF01594 AI-2E family transporter YR821_1860 PF00391 PEP-utilising enzyme, mobile domain YR821_1860 PF02896 PEP-utilising enzyme, TIM barrel domain YR821_1860 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YR821_1862 PF03618 Kinase/pyrophosphorylase YR821_1863 PF00793 DAHP synthetase I family YR821_1864 PF10636 Hemin uptake protein hemP YR821_1865 PF00593 TonB dependent receptor YR821_1865 PF07715 TonB-dependent Receptor Plug Domain YR821_1866 PF05171 Haemin-degrading HemS.ChuX domain YR821_1867 PF01497 Periplasmic binding protein YR821_1868 PF01032 FecCD transport family YR821_1869 PF00005 ABC transporter YR821_1870 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YR821_1871 PF10437 Bacterial lipoate protein ligase C-terminus YR821_1871 PF03099 Biotin/lipoate A/B protein ligase family YR821_1872 PF00877 NlpC/P60 family YR821_1874 PF00892 EamA-like transporter family YR821_1875 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YR821_1876 PF01522 Polysaccharide deacetylase YR821_1877 PF01370 NAD dependent epimerase/dehydratase family YR821_1877 PF02911 Formyl transferase, C-terminal domain YR821_1877 PF00551 Formyl transferase YR821_1878 PF00535 Glycosyl transferase family 2 YR821_1879 PF00535 Glycosyl transferase family 2 YR821_1880 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YR821_1881 PF00005 ABC transporter YR821_1882 PF01032 FecCD transport family YR821_1883 PF02899 Phage integrase, N-terminal SAM-like domain YR821_1883 PF00589 Phage integrase family YR821_1886 PF02661 Fic/DOC family YR821_1887 PF02661 Fic/DOC family YR821_1890 PF04606 Ogr/Delta-like zinc finger YR821_1892 PF00216 Bacterial DNA-binding protein YR821_1893 PF03483 B3/4 domain YR821_1893 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YR821_1893 PF03484 tRNA synthetase B5 domain YR821_1893 PF01588 Putative tRNA binding domain YR821_1893 PF03147 Ferredoxin-fold anticodon binding domain YR821_1894 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YR821_1894 PF01409 tRNA synthetases class II core domain (F) YR821_1895 PF00453 Ribosomal protein L20 YR821_1896 PF01632 Ribosomal protein L35 YR821_1897 PF00707 Translation initiation factor IF-3, C-terminal domain YR821_1897 PF05198 Translation initiation factor IF-3, N-terminal domain YR821_1898 PF03129 Anticodon binding domain YR821_1898 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YR821_1898 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YR821_1898 PF02824 TGS domain YR821_1906 PF01914 MarC family integral membrane protein YR821_1907 PF01464 Transglycosylase SLT domain YR821_1909 PF01297 Zinc-uptake complex component A periplasmic YR821_1910 PF00005 ABC transporter YR821_1911 PF00950 ABC 3 transport family YR821_1912 PF00950 ABC 3 transport family YR821_1913 PF03881 Fructosamine kinase YR821_1914 PF14002 YniB-like protein YR821_1915 PF13419 Haloacid dehalogenase-like hydrolase YR821_1916 PF04307 LexA-binding, inner membrane-associated putative hydrolase YR821_1917 PF00375 Sodium:dicarboxylate symporter family YR821_1918 PF01510 N-acetylmuramoyl-L-alanine amidase YR821_1919 PF09339 IclR helix-turn-helix domain YR821_1919 PF01614 Bacterial transcriptional regulator YR821_1920 PF07690 Major Facilitator Superfamily YR821_1921 PF01435 Peptidase family M48 YR821_1922 PF11818 C-terminal domain of tail specific protease (DUF3340) YR821_1922 PF17804 Tail specific protease N-terminal domain YR821_1922 PF00595 PDZ domain YR821_1922 PF03572 Peptidase family S41 YR821_1923 PF17516 ProQ C-terminal domain YR821_1923 PF04352 ProQ/FINO family YR821_1924 PF13185 GAF domain YR821_1925 PF04403 Paraquat-inducible protein A YR821_1926 PF02470 MlaD protein YR821_1927 PF00563 EAL domain YR821_1927 PF01590 GAF domain YR821_1927 PF00990 Diguanylate cyclase, GGDEF domain YR821_1927 PF00360 Phytochrome region YR821_1928 PF07351 Protein of unknown function (DUF1480) YR821_1933 PF05643 Putative bacterial lipoprotein (DUF799) YR821_1935 PF03783 Curli production assembly/transport component CsgG YR821_1936 PF10753 Toxin GhoT_OrtT YR821_1940 PF00144 Beta-lactamase YR821_1942 PF10709 Protein of unknown function (DUF2511) YR821_1943 PF05425 Copper resistance protein D YR821_1944 PF04234 CopC domain YR821_1945 PF00210 Ferritin-like domain YR821_1947 PF06440 DNA polymerase III, theta subunit YR821_1948 PF00561 alpha/beta hydrolase fold YR821_1951 PF00929 Exonuclease YR821_1952 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YR821_1952 PF00326 Prolyl oligopeptidase family YR821_1954 PF13995 YebF-like protein YR821_1955 PF04266 ASCH domain YR821_1956 PF07130 YebG protein YR821_1957 PF03880 DbpA RNA binding domain YR821_1957 PF00270 DEAD/DEAH box helicase YR821_1957 PF00271 Helicase conserved C-terminal domain YR821_1958 PF02222 ATP-grasp domain YR821_1959 PF03701 Uncharacterised protein family (UPF0181) YR821_1960 PF04715 Anthranilate synthase component I, N terminal region YR821_1960 PF00425 chorismate binding enzyme YR821_1961 PF00293 NUDIX domain YR821_1962 PF03313 Serine dehydratase alpha chain YR821_1962 PF03315 Serine dehydratase beta chain YR821_1964 PF03471 Transporter associated domain YR821_1964 PF03741 Integral membrane protein TerC family YR821_1965 PF03830 PTS system sorbose subfamily IIB component YR821_1965 PF03610 PTS system fructose IIA component YR821_1966 PF03609 PTS system sorbose-specific iic component YR821_1967 PF03613 PTS system mannose/fructose/sorbose family IID component YR821_1968 PF06173 Protein of unknown function (DUF986) YR821_1969 PF02659 Putative manganese efflux pump YR821_1970 PF02441 Flavoprotein YR821_1973 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YR821_1973 PF02770 Acyl-CoA dehydrogenase, middle domain YR821_1973 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YR821_1975 PF05199 GMC oxidoreductase YR821_1975 PF00732 GMC oxidoreductase YR821_1976 PF00501 AMP-binding enzyme YR821_1976 PF13193 AMP-binding enzyme C-terminal domain YR821_1976 PF00550 Phosphopantetheine attachment site YR821_1976 PF00668 Condensation domain YR821_1977 PF07690 Major Facilitator Superfamily YR821_1981 PF13847 Methyltransferase domain YR821_1982 PF03717 Penicillin-binding Protein dimerisation domain YR821_1982 PF00905 Penicillin binding protein transpeptidase domain YR821_1983 PF02578 Multi-copper polyphenol oxidoreductase laccase YR821_1984 PF00313 'Cold-shock' DNA-binding domain YR821_1985 PF10736 Protein of unknown function (DUF2627) YR821_1987 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YR821_1988 PF00324 Amino acid permease YR821_1991 PF13974 YebO-like protein YR821_1992 PF13998 MgrB protein YR821_1993 PF13996 YobH-like protein YR821_1994 PF10964 Protein of unknown function (DUF2766) YR821_1997 PF12833 Helix-turn-helix domain YR821_2000 PF13520 Amino acid permease YR821_2001 PF00005 ABC transporter YR821_2001 PF00664 ABC transporter transmembrane region YR821_2003 PF00360 Phytochrome region YR821_2003 PF00990 Diguanylate cyclase, GGDEF domain YR821_2003 PF01590 GAF domain YR821_2003 PF00563 EAL domain YR821_2004 PF03372 Endonuclease/Exonuclease/phosphatase family YR821_2006 PF06411 HdeA/HdeB family YR821_2007 PF07478 D-ala D-ala ligase C-terminus YR821_2007 PF01820 D-ala D-ala ligase N-terminus YR821_2011 PF08241 Methyltransferase domain YR821_2012 PF00313 'Cold-shock' DNA-binding domain YR821_2013 PF00313 'Cold-shock' DNA-binding domain YR821_2017 PF04794 YdjC-like protein YR821_2018 PF07883 Cupin domain YR821_2018 PF12833 Helix-turn-helix domain YR821_2019 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YR821_2020 PF00232 Glycosyl hydrolase family 1 YR821_2021 PF02378 Phosphotransferase system, EIIC YR821_2022 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YR821_2024 PF00849 RNA pseudouridylate synthase YR821_2024 PF01479 S4 domain YR821_2027 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YR821_2028 PF03553 Na+/H+ antiporter family YR821_2030 PF13520 Amino acid permease YR821_2033 PF00849 RNA pseudouridylate synthase YR821_2034 PF00282 Pyridoxal-dependent decarboxylase conserved domain YR821_2035 PF13520 Amino acid permease YR821_2036 PF04960 Glutaminase YR821_2042 PF13673 Acetyltransferase (GNAT) domain YR821_2044 PF00034 Cytochrome c YR821_2044 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YR821_2047 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2048 PF00005 ABC transporter YR821_2050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YR821_2050 PF00672 HAMP domain YR821_2050 PF02203 Tar ligand binding domain homologue YR821_2051 PF02899 Phage integrase, N-terminal SAM-like domain YR821_2051 PF00589 Phage integrase family YR821_2062 PF02086 D12 class N6 adenine-specific DNA methyltransferase YR821_2070 PF01527 Transposase YR821_2071 PF13333 Integrase core domain YR821_2071 PF00665 Integrase core domain YR821_2071 PF13276 HTH-like domain YR821_2077 PF02796 Helix-turn-helix domain of resolvase YR821_2077 PF00239 Resolvase, N terminal domain YR821_2078 PF07484 Phage Tail Collar Domain YR821_2078 PF03335 Phage tail fibre repeat YR821_2078 PF08400 Prophage tail fibre N-terminal YR821_2079 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YR821_2080 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YR821_2083 PF04865 Baseplate J-like protein YR821_2093 PF17482 Phage tail sheath C-terminal domain YR821_2093 PF04984 Phage tail sheath protein subtilisin-like domain YR821_2101 PF01343 Peptidase family S49 YR821_2110 PF00182 Chitinase class I YR821_2120 PF01381 Helix-turn-helix YR821_2120 PF00717 Peptidase S24-like YR821_2136 PF01066 CDP-alcohol phosphatidyltransferase YR821_2137 PF01541 GIY-YIG catalytic domain YR821_2137 PF02151 UvrB/uvrC motif YR821_2137 PF08459 UvrC Helix-hairpin-helix N-terminal YR821_2138 PF00196 Bacterial regulatory proteins, luxR family YR821_2138 PF00072 Response regulator receiver domain YR821_2139 PF10769 Protein of unknown function (DUF2594) YR821_2142 PF00324 Amino acid permease YR821_2143 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YR821_2143 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YR821_2143 PF01276 Orn/Lys/Arg decarboxylase, major domain YR821_2144 PF13520 Amino acid permease YR821_2145 PF18500 CadC C-terminal domain 1 YR821_2145 PF00486 Transcriptional regulatory protein, C terminal YR821_2147 PF00474 Sodium:solute symporter family YR821_2148 PF00171 Aldehyde dehydrogenase family YR821_2148 PF01619 Proline dehydrogenase YR821_2148 PF14850 DNA-binding domain of Proline dehydrogenase YR821_2148 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YR821_2149 PF00005 ABC transporter YR821_2150 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2151 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_2152 PF00291 Pyridoxal-phosphate dependent enzyme YR821_2153 PF02899 Phage integrase, N-terminal SAM-like domain YR821_2154 PF04539 Sigma-70 region 3 YR821_2154 PF04545 Sigma-70, region 4 YR821_2154 PF04542 Sigma-70 region 2 YR821_2155 PF00700 Bacterial flagellin C-terminal helical region YR821_2155 PF08884 Flagellin D3 domain YR821_2155 PF00669 Bacterial flagellin N-terminal helical region YR821_2156 PF08884 Flagellin D3 domain YR821_2156 PF00700 Bacterial flagellin C-terminal helical region YR821_2156 PF00669 Bacterial flagellin N-terminal helical region YR821_2157 PF08884 Flagellin D3 domain YR821_2157 PF00700 Bacterial flagellin C-terminal helical region YR821_2157 PF00669 Bacterial flagellin N-terminal helical region YR821_2158 PF07196 Flagellin hook IN motif YR821_2158 PF07195 Flagellar hook-associated protein 2 C-terminus YR821_2158 PF02465 Flagellar hook-associated protein 2 N-terminus YR821_2159 PF02561 Flagellar protein FliS YR821_2160 PF05400 Flagellar protein FliT YR821_2161 PF12833 Helix-turn-helix domain YR821_2162 PF01966 HD domain YR821_2163 PF07885 Ion channel YR821_2163 PF02254 TrkA-N domain YR821_2164 PF01223 DNA/RNA non-specific endonuclease YR821_2166 PF02049 Flagellar hook-basal body complex protein FliE YR821_2167 PF01514 Secretory protein of YscJ/FliF family YR821_2167 PF08345 Flagellar M-ring protein C-terminal YR821_2168 PF01706 FliG C-terminal domain YR821_2168 PF14841 FliG middle domain YR821_2168 PF14842 FliG N-terminal domain YR821_2169 PF02108 Flagellar assembly protein FliH YR821_2170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YR821_2170 PF18269 T3SS EscN ATPase C-terminal domain YR821_2171 PF02050 Flagellar FliJ protein YR821_2172 PF02120 Flagellar hook-length control protein FliK YR821_2173 PF03748 Flagellar basal body-associated protein FliL YR821_2174 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YR821_2174 PF02154 Flagellar motor switch protein FliM YR821_2175 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YR821_2175 PF16973 Flagellar motor switch protein FliN N-terminal YR821_2176 PF04347 Flagellar biosynthesis protein, FliO YR821_2177 PF00813 FliP family YR821_2178 PF01313 Bacterial export proteins, family 3 YR821_2179 PF01311 Bacterial export proteins, family 1 YR821_2180 PF00669 Bacterial flagellin N-terminal helical region YR821_2181 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YR821_2181 PF00460 Flagella basal body rod protein YR821_2182 PF10135 Rod binding protein YR821_2182 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YR821_2183 PF02119 Flagellar P-ring protein YR821_2184 PF02107 Flagellar L-ring protein YR821_2185 PF00460 Flagella basal body rod protein YR821_2185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YR821_2186 PF00460 Flagella basal body rod protein YR821_2186 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YR821_2187 PF07559 Flagellar basal body protein FlaE YR821_2187 PF00460 Flagella basal body rod protein YR821_2187 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YR821_2188 PF13860 FlgD Ig-like domain YR821_2188 PF03963 Flagellar hook capping protein - N-terminal region YR821_2188 PF13861 FlgD Tudor-like domain YR821_2189 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YR821_2189 PF00460 Flagella basal body rod protein YR821_2190 PF00460 Flagella basal body rod protein YR821_2191 PF13144 Chaperone for flagella basal body P-ring formation YR821_2191 PF17656 FlgA N-terminal domain YR821_2192 PF04316 Anti-sigma-28 factor, FlgM YR821_2193 PF05130 FlgN protein YR821_2195 PF06366 Flagellar protein FlhE YR821_2196 PF00771 FHIPEP family YR821_2197 PF01312 FlhB HrpN YscU SpaS Family YR821_2198 PF01483 Proprotein convertase P-domain YR821_2198 PF00082 Subtilase family YR821_2199 PF00196 Bacterial regulatory proteins, luxR family YR821_2201 PF00419 Fimbrial protein YR821_2203 PF00577 Outer membrane usher protein YR821_2203 PF13953 PapC C-terminal domain YR821_2203 PF13954 PapC N-terminal domain YR821_2207 PF04344 Chemotaxis phosphatase, CheZ YR821_2208 PF00072 Response regulator receiver domain YR821_2209 PF01339 CheB methylesterase YR821_2209 PF00072 Response regulator receiver domain YR821_2210 PF01739 CheR methyltransferase, SAM binding domain YR821_2210 PF03705 CheR methyltransferase, all-alpha domain YR821_2211 PF02203 Tar ligand binding domain homologue YR821_2211 PF00672 HAMP domain YR821_2211 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YR821_2212 PF00672 HAMP domain YR821_2212 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YR821_2212 PF02203 Tar ligand binding domain homologue YR821_2213 PF01584 CheW-like domain YR821_2214 PF01584 CheW-like domain YR821_2214 PF09078 CheY binding YR821_2214 PF01627 Hpt domain YR821_2214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2214 PF02895 Signal transducing histidine kinase, homodimeric domain YR821_2215 PF13677 Membrane MotB of proton-channel complex MotA/MotB YR821_2215 PF00691 OmpA family YR821_2216 PF01618 MotA/TolQ/ExbB proton channel family YR821_2217 PF05280 Flagellar transcriptional activator (FlhC) YR821_2218 PF05247 Flagellar transcriptional activator (FlhD) YR821_2219 PF00582 Universal stress protein family YR821_2221 PF02308 MgtC family YR821_2224 PF00672 HAMP domain YR821_2224 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YR821_2224 PF02203 Tar ligand binding domain homologue YR821_2225 PF10781 Dextransucrase DSRB YR821_2226 PF00313 'Cold-shock' DNA-binding domain YR821_2228 PF00356 Bacterial regulatory proteins, lacI family YR821_2229 PF02929 Beta galactosidase small chain YR821_2229 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YR821_2229 PF00703 Glycosyl hydrolases family 2 YR821_2229 PF16353 Domain of unknown function(DUF4981) YR821_2229 PF02837 Glycosyl hydrolases family 2, sugar binding domain YR821_2230 PF14765 Polyketide synthase dehydratase YR821_2230 PF00550 Phosphopantetheine attachment site YR821_2230 PF08659 KR domain YR821_2230 PF00107 Zinc-binding dehydrogenase YR821_2230 PF00109 Beta-ketoacyl synthase, N-terminal domain YR821_2230 PF16197 Ketoacyl-synthetase C-terminal extension YR821_2230 PF08240 Alcohol dehydrogenase GroES-like domain YR821_2230 PF00698 Acyl transferase domain YR821_2230 PF02801 Beta-ketoacyl synthase, C-terminal domain YR821_2231 PF10777 Inner membrane protein YlaC YR821_2233 PF14001 YdfZ protein YR821_2234 PF06167 Glucose-regulated metallo-peptidase M90 YR821_2236 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YR821_2236 PF01648 4'-phosphopantetheinyl transferase superfamily YR821_2238 PF00939 Sodium:sulfate symporter transmembrane region YR821_2239 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase YR821_2240 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YR821_2241 PF04223 Citrate lyase, alpha subunit (CitF) YR821_2242 PF03328 HpcH/HpaI aldolase/citrate lyase family YR821_2243 PF06857 Malonate decarboxylase delta subunit (MdcD) YR821_2244 PF08218 Citrate lyase ligase C-terminal domain YR821_2245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2245 PF00989 PAS fold YR821_2245 PF17203 Single cache domain 3 YR821_2245 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain YR821_2246 PF12431 Transcriptional regulator YR821_2246 PF00072 Response regulator receiver domain YR821_2247 PF00072 Response regulator receiver domain YR821_2247 PF00196 Bacterial regulatory proteins, luxR family YR821_2248 PF05231 MASE1 YR821_2248 PF07730 Histidine kinase YR821_2248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2249 PF07690 Major Facilitator Superfamily YR821_2251 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2252 PF00005 ABC transporter YR821_2252 PF08402 TOBE domain YR821_2254 PF13356 Arm DNA-binding domain YR821_2254 PF00589 Phage integrase family YR821_2257 PF13693 Winged helix-turn-helix DNA-binding YR821_2264 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YR821_2268 PF04335 VirB8 protein YR821_2269 PF03524 Conjugal transfer protein YR821_2270 PF03743 Bacterial conjugation TrbI-like protein YR821_2271 PF00437 Type II/IV secretion system protein YR821_2275 PF08401 Domain of unknown function (DUF1738) YR821_2275 PF18818 Metallopeptidase superfamily domain YR821_2280 PF01527 Transposase YR821_2281 PF13333 Integrase core domain YR821_2281 PF00665 Integrase core domain YR821_2281 PF13276 HTH-like domain YR821_2287 PF04363 Protein of unknown function (DUF496) YR821_2288 PF04632 Fusaric acid resistance protein family YR821_2290 PF08411 Exonuclease C-terminal YR821_2290 PF00929 Exonuclease YR821_2291 PF13520 Amino acid permease YR821_2293 PF07715 TonB-dependent Receptor Plug Domain YR821_2293 PF00593 TonB dependent receptor YR821_2294 PF00005 ABC transporter YR821_2295 PF01032 FecCD transport family YR821_2297 PF00324 Amino acid permease YR821_2298 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2298 PF03466 LysR substrate binding domain YR821_2300 PF03601 Conserved hypothetical protein 698 YR821_2301 PF01261 Xylose isomerase-like TIM barrel YR821_2302 PF02378 Phosphotransferase system, EIIC YR821_2302 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YR821_2303 PF00294 pfkB family carbohydrate kinase YR821_2304 PF00381 PTS HPr component phosphorylation site YR821_2304 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YR821_2305 PF00293 NUDIX domain YR821_2306 PF03264 NapC/NirT cytochrome c family, N-terminal region YR821_2307 PF00384 Molybdopterin oxidoreductase YR821_2307 PF18364 Molybdopterin oxidoreductase N-terminal domain YR821_2307 PF01568 Molydopterin dinucleotide binding domain YR821_2308 PF03692 Putative zinc- or iron-chelating domain YR821_2309 PF03222 Tryptophan/tyrosine permease family YR821_2311 PF08207 Elongation factor P (EF-P) KOW-like domain YR821_2311 PF01132 Elongation factor P (EF-P) OB domain YR821_2311 PF09285 Elongation factor P, C-terminal YR821_2312 PF03786 D-mannonate dehydratase (UxuA) YR821_2313 PF01232 Mannitol dehydrogenase Rossmann domain YR821_2313 PF08125 Mannitol dehydrogenase C-terminal domain YR821_2315 PF07683 Cobalamin synthesis protein cobW C-terminal domain YR821_2315 PF02492 CobW/HypB/UreG, nucleotide-binding domain YR821_2316 PF01569 PAP2 superfamily YR821_2317 PF00877 NlpC/P60 family YR821_2318 PF12792 CSS motif domain associated with EAL YR821_2318 PF00563 EAL domain YR821_2319 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YR821_2320 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2321 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2321 PF12911 N-terminal TM domain of oligopeptide transport permease C YR821_2322 PF00005 ABC transporter YR821_2322 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YR821_2323 PF13989 YejG-like protein YR821_2324 PF07690 Major Facilitator Superfamily YR821_2325 PF01479 S4 domain YR821_2325 PF00849 RNA pseudouridylate synthase YR821_2326 PF00271 Helicase conserved C-terminal domain YR821_2326 PF04851 Type III restriction enzyme, res subunit YR821_2327 PF01386 Ribosomal L25p family YR821_2329 PF04245 37-kD nucleoid-associated bacterial protein YR821_2330 PF07208 Protein of unknown function (DUF1414) YR821_2331 PF11893 Domain of unknown function (DUF3413) YR821_2331 PF00884 Sulfatase YR821_2333 PF00239 Resolvase, N terminal domain YR821_2333 PF02796 Helix-turn-helix domain of resolvase YR821_2335 PF10549 ORF11CD3 domain YR821_2335 PF09669 Phage regulatory protein Rha (Phage_pRha) YR821_2336 PF01797 Transposase IS200 like YR821_2337 PF01385 Probable transposase YR821_2337 PF07282 Putative transposase DNA-binding domain YR821_2337 PF12323 Helix-turn-helix domain YR821_2340 PF06183 DinI-like family YR821_2341 PF12706 Beta-lactamase superfamily domain YR821_2342 PF00144 Beta-lactamase YR821_2343 PF13302 Acetyltransferase (GNAT) domain YR821_2344 PF00267 Gram-negative porin YR821_2345 PF07690 Major Facilitator Superfamily YR821_2346 PF01627 Hpt domain YR821_2346 PF16359 RcsD-ABL domain YR821_2346 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2347 PF00196 Bacterial regulatory proteins, luxR family YR821_2347 PF00072 Response regulator receiver domain YR821_2348 PF00512 His Kinase A (phospho-acceptor) domain YR821_2348 PF09456 RcsC Alpha-Beta-Loop (ABL) YR821_2348 PF00072 Response regulator receiver domain YR821_2348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2350 PF03989 DNA gyrase C-terminal domain, beta-propeller YR821_2350 PF00521 DNA gyrase/topoisomerase IV, subunit A YR821_2352 PF03477 ATP cone domain YR821_2352 PF02867 Ribonucleotide reductase, barrel domain YR821_2352 PF00317 Ribonucleotide reductase, all-alpha domain YR821_2353 PF00268 Ribonucleotide reductase, small chain YR821_2354 PF00111 2Fe-2S iron-sulfur cluster binding domain YR821_2356 PF03974 Ecotin YR821_2357 PF00994 Probable molybdopterin binding domain YR821_2358 PF04138 GtrA-like protein YR821_2359 PF00535 Glycosyl transferase family 2 YR821_2362 PF03222 Tryptophan/tyrosine permease family YR821_2363 PF07437 YfaZ precursor YR821_2364 PF00199 Catalase YR821_2364 PF06628 Catalase-related immune-responsive YR821_2365 PF00501 AMP-binding enzyme YR821_2365 PF13193 AMP-binding enzyme C-terminal domain YR821_2366 PF13378 Enolase C-terminal domain-like YR821_2367 PF00378 Enoyl-CoA hydratase/isomerase YR821_2368 PF12697 Alpha/beta hydrolase family YR821_2369 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YR821_2369 PF16582 Middle domain of thiamine pyrophosphate YR821_2369 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YR821_2370 PF00425 chorismate binding enzyme YR821_2371 PF05957 Bacterial protein of unknown function (DUF883) YR821_2372 PF06496 Protein of unknown function (DUF1097) YR821_2373 PF00361 Proton-conducting membrane transporter YR821_2374 PF00361 Proton-conducting membrane transporter YR821_2375 PF00361 Proton-conducting membrane transporter YR821_2375 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YR821_2376 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YR821_2377 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YR821_2378 PF12838 4Fe-4S dicluster domain YR821_2379 PF00146 NADH dehydrogenase YR821_2380 PF00384 Molybdopterin oxidoreductase YR821_2380 PF01568 Molydopterin dinucleotide binding domain YR821_2380 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YR821_2380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YR821_2381 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YR821_2381 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YR821_2381 PF10531 SLBB domain YR821_2383 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YR821_2383 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YR821_2384 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YR821_2385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YR821_2386 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2386 PF03466 LysR substrate binding domain YR821_2388 PF00155 Aminotransferase class I and II YR821_2391 PF03600 Citrate transporter YR821_2391 PF02080 TrkA-C domain YR821_2393 PF03887 YfbU domain YR821_2394 PF04217 Protein of unknown function, DUF412 YR821_2395 PF00871 Acetokinase family YR821_2396 PF01515 Phosphate acetyl/butaryl transferase YR821_2396 PF07085 DRTGG domain YR821_2397 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YR821_2397 PF00356 Bacterial regulatory proteins, lacI family YR821_2398 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YR821_2400 PF03611 PTS system sugar-specific permease component YR821_2401 PF00293 NUDIX domain YR821_2402 PF12850 Calcineurin-like phosphoesterase superfamily domain YR821_2404 PF00043 Glutathione S-transferase, C-terminal domain YR821_2404 PF02798 Glutathione S-transferase, N-terminal domain YR821_2405 PF08338 Domain of unknown function (DUF1731) YR821_2405 PF01370 NAD dependent epimerase/dehydratase family YR821_2406 PF00005 ABC transporter YR821_2407 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2408 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2409 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_2411 PF02441 Flavoprotein YR821_2412 PF00156 Phosphoribosyl transferase domain YR821_2413 PF02674 Colicin V production protein YR821_2414 PF05036 Sporulation related domain YR821_2415 PF08245 Mur ligase middle domain YR821_2415 PF02875 Mur ligase family, glutamate ligase domain YR821_2416 PF17848 Acetyl-coA carboxylase zinc finger domain YR821_2416 PF01039 Carboxyl transferase domain YR821_2417 PF09335 SNARE associated Golgi protein YR821_2418 PF01416 tRNA pseudouridine synthase YR821_2419 PF02774 Semialdehyde dehydrogenase, dimerisation domain YR821_2419 PF01118 Semialdehyde dehydrogenase, NAD binding domain YR821_2420 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YR821_2420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YR821_2420 PF11890 Domain of unknown function (DUF3410) YR821_2424 PF00155 Aminotransferase class I and II YR821_2425 PF00578 AhpC/TSA family YR821_2432 PF02801 Beta-ketoacyl synthase, C-terminal domain YR821_2432 PF00109 Beta-ketoacyl synthase, N-terminal domain YR821_2433 PF01266 FAD dependent oxidoreductase YR821_2433 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YR821_2434 PF08891 YfcL protein YR821_2435 PF04315 Elongation factor P hydroxylase YR821_2436 PF01925 Sulfite exporter TauE/SafE YR821_2437 PF03411 Penicillin-insensitive murein endopeptidase YR821_2438 PF01264 Chorismate synthase YR821_2439 PF05175 Methyltransferase small domain YR821_2440 PF01713 Smr domain YR821_2441 PF00300 Histidine phosphatase superfamily (branch 1) YR821_2442 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YR821_2442 PF00378 Enoyl-CoA hydratase/isomerase YR821_2442 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YR821_2443 PF02803 Thiolase, C-terminal domain YR821_2443 PF00108 Thiolase, N-terminal domain YR821_2444 PF04175 Protein of unknown function (DUF406) YR821_2445 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YR821_2446 PF04333 MlaA lipoprotein YR821_2447 PF03918 Cytochrome C biogenesis protein YR821_2448 PF03918 Cytochrome C biogenesis protein YR821_2449 PF08534 Redoxin YR821_2450 PF01578 Cytochrome C assembly protein YR821_2450 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YR821_2451 PF03100 CcmE YR821_2452 PF04995 Heme exporter protein D (CcmD) YR821_2453 PF01578 Cytochrome C assembly protein YR821_2454 PF03379 CcmB protein YR821_2455 PF00005 ABC transporter YR821_2459 PF03831 PhnA domain YR821_2459 PF08274 PhnA Zinc-Ribbon YR821_2460 PF13406 Transglycosylase SLT domain YR821_2463 PF01292 Prokaryotic cytochrome b561 YR821_2464 PF00155 Aminotransferase class I and II YR821_2465 PF07350 Protein of unknown function (DUF1479) YR821_2466 PF07694 5TMR of 5TMR-LYT YR821_2466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2466 PF06580 Histidine kinase YR821_2467 PF04397 LytTr DNA-binding domain YR821_2467 PF00072 Response regulator receiver domain YR821_2468 PF07690 Major Facilitator Superfamily YR821_2469 PF02685 Glucokinase YR821_2471 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2471 PF03466 LysR substrate binding domain YR821_2473 PF01566 Natural resistance-associated macrophage protein YR821_2475 PF01773 Na+ dependent nucleoside transporter N-terminus YR821_2475 PF07670 Nucleoside recognition YR821_2475 PF07662 Na+ dependent nucleoside transporter C-terminus YR821_2476 PF00749 tRNA synthetases class I (E and Q), catalytic domain YR821_2480 PF12843 Putative quorum-sensing-regulated virulence factor YR821_2481 PF00533 BRCA1 C Terminus (BRCT) domain YR821_2481 PF01653 NAD-dependent DNA ligase adenylation domain YR821_2481 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YR821_2481 PF12826 Helix-hairpin-helix motif YR821_2481 PF03120 NAD-dependent DNA ligase OB-fold domain YR821_2482 PF04354 ZipA, C-terminal FtsZ-binding domain YR821_2484 PF00291 Pyridoxal-phosphate dependent enzyme YR821_2486 PF00381 PTS HPr component phosphorylation site YR821_2487 PF05524 PEP-utilising enzyme, N-terminal YR821_2487 PF00391 PEP-utilising enzyme, mobile domain YR821_2487 PF02896 PEP-utilising enzyme, TIM barrel domain YR821_2488 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YR821_2489 PF00291 Pyridoxal-phosphate dependent enzyme YR821_2490 PF00005 ABC transporter YR821_2491 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2492 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2494 PF07690 Major Facilitator Superfamily YR821_2495 PF01418 Helix-turn-helix domain, rpiR family YR821_2495 PF01380 SIS domain YR821_2496 PF04074 YhcH/YjgK/YiaL YR821_2497 PF00480 ROK family YR821_2499 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YR821_2500 PF00701 Dihydrodipicolinate synthetase family YR821_2501 PF04261 Dyp-type peroxidase family YR821_2502 PF06572 Protein of unknown function (DUF1131) YR821_2503 PF04076 Bacterial OB fold (BOF) protein YR821_2510 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YR821_2517 PF00589 Phage integrase family YR821_2519 PF00583 Acetyltransferase (GNAT) family YR821_2520 PF01218 Coproporphyrinogen III oxidase YR821_2521 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YR821_2522 PF00390 Malic enzyme, N-terminal domain YR821_2522 PF03949 Malic enzyme, NAD binding domain YR821_2522 PF01515 Phosphate acetyl/butaryl transferase YR821_2523 PF00293 NUDIX domain YR821_2524 PF03264 NapC/NirT cytochrome c family, N-terminal region YR821_2525 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YR821_2526 PF10518 TAT (twin-arginine translocation) pathway signal sequence YR821_2526 PF01568 Molydopterin dinucleotide binding domain YR821_2526 PF00384 Molybdopterin oxidoreductase YR821_2526 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YR821_2527 PF03927 NapD protein YR821_2528 PF00037 4Fe-4S binding domain YR821_2528 PF12800 4Fe-4S binding domain YR821_2528 PF13187 4Fe-4S dicluster domain YR821_2529 PF00196 Bacterial regulatory proteins, luxR family YR821_2529 PF00072 Response regulator receiver domain YR821_2530 PF00873 AcrB/AcrD/AcrF family YR821_2532 PF01817 Chorismate mutase type II YR821_2534 PF03960 ArsC family YR821_2535 PF01546 Peptidase family M20/M25/M40 YR821_2535 PF07687 Peptidase dimerisation domain YR821_2536 PF02557 D-alanyl-D-alanine carboxypeptidase YR821_2537 PF13980 Uncharacterised protein family (UPF0370) YR821_2538 PF02230 Phospholipase/Carboxylesterase YR821_2539 PF08351 Domain of unknown function (DUF1726) YR821_2539 PF13718 GNAT acetyltransferase 2 YR821_2539 PF05127 Helicase YR821_2539 PF17176 tRNA-binding domain YR821_2540 PF04284 Protein of unknown function (DUF441) YR821_2542 PF01259 SAICAR synthetase YR821_2543 PF06804 NlpB/DapX lipoprotein YR821_2544 PF00701 Dihydrodipicolinate synthetase family YR821_2545 PF01842 ACT domain YR821_2546 PF00578 AhpC/TSA family YR821_2547 PF01594 AI-2E family transporter YR821_2548 PF01435 Peptidase family M48 YR821_2548 PF07720 Tetratricopeptide repeat YR821_2549 PF03960 ArsC family YR821_2550 PF00308 Bacterial dnaA protein YR821_2551 PF00860 Permease family YR821_2553 PF00586 AIR synthase related protein, N-terminal domain YR821_2553 PF02769 AIR synthase related protein, C-terminal domain YR821_2554 PF00551 Formyl transferase YR821_2555 PF13302 Acetyltransferase (GNAT) domain YR821_2556 PF00005 ABC transporter YR821_2557 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2558 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2559 PF17941 Polyphosphate kinase C-terminal domain 1 YR821_2559 PF13090 Polyphosphate kinase C-terminal domain 2 YR821_2559 PF02503 Polyphosphate kinase middle domain YR821_2559 PF13089 Polyphosphate kinase N-terminal domain YR821_2560 PF02541 Ppx/GppA phosphatase family YR821_2562 PF00571 CBS domain YR821_2562 PF01769 Divalent cation transporter YR821_2562 PF03448 MgtE intracellular N domain YR821_2565 PF00012 Hsp70 protein YR821_2567 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YR821_2567 PF02753 Pili assembly chaperone PapD, C-terminal domain YR821_2568 PF13954 PapC N-terminal domain YR821_2568 PF00577 Outer membrane usher protein YR821_2568 PF13953 PapC C-terminal domain YR821_2570 PF13533 Biotin-lipoyl like YR821_2571 PF00873 AcrB/AcrD/AcrF family YR821_2572 PF00873 AcrB/AcrD/AcrF family YR821_2573 PF07690 Major Facilitator Superfamily YR821_2574 PF00672 HAMP domain YR821_2574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2574 PF00512 His Kinase A (phospho-acceptor) domain YR821_2575 PF00072 Response regulator receiver domain YR821_2575 PF00486 Transcriptional regulatory protein, C terminal YR821_2576 PF07411 Domain of unknown function (DUF1508) YR821_2577 PF16325 Peptidase family U32 C-terminal domain YR821_2577 PF01136 Peptidase family U32 YR821_2578 PF00781 Diacylglycerol kinase catalytic domain YR821_2581 PF08543 Phosphomethylpyrimidine kinase YR821_2584 PF00117 Glutamine amidotransferase class-I YR821_2584 PF00958 GMP synthase C terminal domain YR821_2584 PF02540 NAD synthase YR821_2585 PF00571 CBS domain YR821_2585 PF00478 IMP dehydrogenase / GMP reductase domain YR821_2586 PF13742 OB-fold nucleic acid binding domain YR821_2586 PF02601 Exonuclease VII, large subunit YR821_2587 PF07191 zinc-ribbons YR821_2588 PF01926 50S ribosome-binding GTPase YR821_2588 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YR821_2589 PF13360 PQQ-like domain YR821_2590 PF09976 Tetratricopeptide repeat-like domain YR821_2591 PF13393 Histidyl-tRNA synthetase YR821_2591 PF03129 Anticodon binding domain YR821_2592 PF04551 GcpE protein YR821_2593 PF13464 Domain of unknown function (DUF4115) YR821_2595 PF04055 Radical SAM superfamily YR821_2596 PF00334 Nucleoside diphosphate kinase YR821_2598 PF06832 Penicillin-Binding Protein C-terminus Family YR821_2598 PF00912 Transglycosylase YR821_2598 PF00905 Penicillin binding protein transpeptidase domain YR821_2599 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YR821_2599 PF01835 MG2 domain YR821_2599 PF17962 Bacterial macroglobulin domain 6 YR821_2599 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YR821_2599 PF07703 Alpha-2-macroglobulin bait region domain YR821_2599 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain YR821_2599 PF07678 A-macroglobulin TED domain YR821_2599 PF00207 Alpha-2-macroglobulin family YR821_2599 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YR821_2600 PF14581 SseB protein C-terminal domain YR821_2600 PF07179 SseB protein N-terminal domain YR821_2601 PF12404 Peptidase YR821_2601 PF00883 Cytosol aminopeptidase family, catalytic domain YR821_2602 PF04384 Iron-sulphur cluster assembly YR821_2603 PF00111 2Fe-2S iron-sulfur cluster binding domain YR821_2604 PF00012 Hsp70 protein YR821_2605 PF07743 HSCB C-terminal oligomerisation domain YR821_2605 PF00226 DnaJ domain YR821_2606 PF01521 Iron-sulphur cluster biosynthesis YR821_2607 PF01592 NifU-like N terminal domain YR821_2608 PF00266 Aminotransferase class-V YR821_2609 PF02082 Transcriptional regulator YR821_2610 PF00588 SpoU rRNA Methylase family YR821_2611 PF00459 Inositol monophosphatase family YR821_2612 PF03824 High-affinity nickel-transport protein YR821_2613 PF06226 Protein of unknown function (DUF1007) YR821_2614 PF00874 PRD domain YR821_2615 PF12832 MFS_1 like family YR821_2616 PF00464 Serine hydroxymethyltransferase YR821_2617 PF00970 Oxidoreductase FAD-binding domain YR821_2617 PF00042 Globin YR821_2617 PF00175 Oxidoreductase NAD-binding domain YR821_2618 PF14502 Helix-turn-helix domain YR821_2618 PF14503 YhfZ C-terminal domain YR821_2620 PF01168 Alanine racemase, N-terminal domain YR821_2621 PF02126 Phosphotriesterase family YR821_2622 PF10941 Protein of unknown function DUF2620 YR821_2623 PF10797 Protein of unknown function YR821_2624 PF00543 Nitrogen regulatory protein P-II YR821_2625 PF00795 Carbon-nitrogen hydrolase YR821_2625 PF02540 NAD synthase YR821_2626 PF00072 Response regulator receiver domain YR821_2626 PF00158 Sigma-54 interaction domain YR821_2627 PF13942 YfhG lipoprotein YR821_2628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2628 PF00512 His Kinase A (phospho-acceptor) domain YR821_2630 PF02769 AIR synthase related protein, C-terminal domain YR821_2630 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YR821_2630 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YR821_2631 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_2631 PF01464 Transglycosylase SLT domain YR821_2632 PF14437 MafB19-like deaminase YR821_2634 PF02378 Phosphotransferase system, EIIC YR821_2634 PF00367 phosphotransferase system, EIIB YR821_2635 PF01380 SIS domain YR821_2636 PF01380 SIS domain YR821_2636 PF01418 Helix-turn-helix domain, rpiR family YR821_2637 PF12838 4Fe-4S dicluster domain YR821_2638 PF01648 4'-phosphopantetheinyl transferase superfamily YR821_2639 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YR821_2640 PF02565 Recombination protein O C terminal YR821_2640 PF11967 Recombination protein O N terminal YR821_2641 PF07650 KH domain YR821_2641 PF01926 50S ribosome-binding GTPase YR821_2642 PF00035 Double-stranded RNA binding motif YR821_2642 PF14622 Ribonuclease-III-like YR821_2643 PF10502 Signal peptidase, peptidase S26 YR821_2644 PF06421 GTP-binding protein LepA C-terminus YR821_2644 PF03144 Elongation factor Tu domain 2 YR821_2644 PF00009 Elongation factor Tu GTP binding domain YR821_2644 PF00679 Elongation factor G C-terminus YR821_2646 PF03888 MucB/RseB N-terminal domain YR821_2646 PF17188 MucB/RseB C-terminal domain YR821_2647 PF03873 Anti sigma-E protein RseA, C-terminal domain YR821_2647 PF03872 Anti sigma-E protein RseA, N-terminal domain YR821_2648 PF04542 Sigma-70 region 2 YR821_2648 PF08281 Sigma-70, region 4 YR821_2649 PF00890 FAD binding domain YR821_2649 PF02910 Fumarate reductase flavoprotein C-term YR821_2650 PF05175 Methyltransferase small domain YR821_2651 PF00270 DEAD/DEAH box helicase YR821_2651 PF00271 Helicase conserved C-terminal domain YR821_2652 PF12796 Ankyrin repeats (3 copies) YR821_2654 PF01228 Glycine radical YR821_2655 PF03167 Uracil DNA glycosylase superfamily YR821_2656 PF01025 GrpE YR821_2657 PF01513 ATP-NAD kinase YR821_2658 PF02463 RecF/RecN/SMC N terminal domain YR821_2659 PF04355 SmpA / OmlA family YR821_2660 PF03658 RnfH family Ubiquitin YR821_2661 PF03364 Polyketide cyclase / dehydrase and lipid transport YR821_2662 PF01668 SmpB protein YR821_2663 PF00589 Phage integrase family YR821_2663 PF13356 Arm DNA-binding domain YR821_2667 PF00665 Integrase core domain YR821_2667 PF01527 Transposase YR821_2667 PF13276 HTH-like domain YR821_2667 PF13333 Integrase core domain YR821_2669 PF01527 Transposase YR821_2670 PF00571 CBS domain YR821_2670 PF01380 SIS domain YR821_2671 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YR821_2671 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YR821_2673 PF02653 Branched-chain amino acid transport system / permease component YR821_2674 PF00005 ABC transporter YR821_2676 PF00561 alpha/beta hydrolase fold YR821_2678 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2678 PF03466 LysR substrate binding domain YR821_2679 PF02652 L-lactate permease YR821_2680 PF01070 FMN-dependent dehydrogenase YR821_2681 PF06039 Malate:quinone oxidoreductase (Mqo) YR821_2682 PF00313 'Cold-shock' DNA-binding domain YR821_2684 PF06711 Protein of unknown function (DUF1198) YR821_2685 PF09400 Protein of unknown function (DUF2002) YR821_2688 PF07972 NrdI Flavodoxin like YR821_2689 PF02867 Ribonucleotide reductase, barrel domain YR821_2689 PF00317 Ribonucleotide reductase, all-alpha domain YR821_2689 PF08343 Ribonucleotide reductase N-terminal YR821_2690 PF00268 Ribonucleotide reductase, small chain YR821_2691 PF00005 ABC transporter YR821_2691 PF00571 CBS domain YR821_2692 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2693 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YR821_2697 PF01047 MarR family YR821_2699 PF00529 HlyD membrane-fusion protein of T1SS YR821_2699 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YR821_2700 PF07690 Major Facilitator Superfamily YR821_2701 PF08032 RNA 2'-O ribose methyltransferase substrate binding YR821_2701 PF00588 SpoU rRNA Methylase family YR821_2703 PF00085 Thioredoxin YR821_2704 PF03942 DTW domain YR821_2705 PF13380 CoA binding domain YR821_2705 PF13607 Succinyl-CoA ligase like flavodoxin domain YR821_2705 PF00583 Acetyltransferase (GNAT) family YR821_2706 PF13091 PLD-like domain YR821_2707 PF10043 Predicted periplasmic lipoprotein (DUF2279) YR821_2709 PF00005 ABC transporter YR821_2709 PF09383 NIL domain YR821_2710 PF00528 Binding-protein-dependent transport system inner membrane component YR821_2711 PF03180 NLPA lipoprotein YR821_2712 PF16358 RcsF lipoprotein YR821_2713 PF01980 tRNA-methyltransferase O YR821_2713 PF18389 TrmO C-terminal domain YR821_2714 PF03129 Anticodon binding domain YR821_2714 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YR821_2714 PF04073 Aminoacyl-tRNA editing domain YR821_2715 PF04170 NlpE N-terminal domain YR821_2715 PF17185 NlpE C-terminal OB domain YR821_2716 PF00472 RF-1 domain YR821_2717 PF07152 YaeQ protein YR821_2718 PF06786 Uncharacterised protein family (UPF0253) YR821_2719 PF07073 Modulator of Rho-dependent transcription termination (ROF) YR821_2720 PF00034 Cytochrome c YR821_2721 PF11734 TilS substrate C-terminal domain YR821_2721 PF09179 TilS substrate binding domain YR821_2721 PF01171 PP-loop family YR821_2722 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YR821_2726 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YR821_2727 PF07733 Bacterial DNA polymerase III alpha NTPase domain YR821_2727 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YR821_2727 PF14579 Helix-hairpin-helix motif YR821_2727 PF02811 PHP domain YR821_2727 PF01336 OB-fold nucleic acid binding domain YR821_2728 PF01351 Ribonuclease HII YR821_2729 PF02684 Lipid-A-disaccharide synthetase YR821_2730 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YR821_2730 PF00132 Bacterial transferase hexapeptide (six repeats) YR821_2731 PF07977 FabA-like domain YR821_2732 PF00132 Bacterial transferase hexapeptide (six repeats) YR821_2732 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YR821_2733 PF03938 Outer membrane protein (OmpH-like) YR821_2734 PF01103 Surface antigen YR821_2734 PF07244 Surface antigen variable number repeat YR821_2735 PF17820 PDZ domain YR821_2735 PF02163 Peptidase family M50 YR821_2737 PF01255 Putative undecaprenyl diphosphate synthase YR821_2738 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YR821_2738 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YR821_2738 PF13288 DXP reductoisomerase C-terminal domain YR821_2739 PF01765 Ribosome recycling factor YR821_2740 PF00696 Amino acid kinase family YR821_2741 PF00889 Elongation factor TS YR821_2742 PF00318 Ribosomal protein S2 YR821_2744 PF00557 Metallopeptidase family M24 YR821_2745 PF01842 ACT domain YR821_2745 PF08335 GlnD PII-uridylyltransferase YR821_2745 PF01966 HD domain YR821_2745 PF01909 Nucleotidyltransferase domain YR821_2746 PF00132 Bacterial transferase hexapeptide (six repeats) YR821_2746 PF14602 Hexapeptide repeat of succinyl-transferase YR821_2746 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YR821_2747 PF11944 Protein of unknown function (DUF3461) YR821_2748 PF00258 Flavodoxin YR821_2749 PF00849 RNA pseudouridylate synthase YR821_2750 PF04287 tRNA pseudouridine synthase C YR821_2751 PF07348 Syd protein (SUKH-2) YR821_2752 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YR821_2752 PF14489 QueF-like protein YR821_2753 PF03641 Possible lysine decarboxylase YR821_2753 PF11892 Domain of unknown function (DUF3412) YR821_2753 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YR821_2754 PF01367 5'-3' exonuclease, C-terminal SAM fold YR821_2754 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YR821_2755 PF01728 FtsJ-like methyltransferase YR821_2755 PF18125 RlmM ferredoxin-like domain YR821_2756 PF04241 Protein of unknown function (DUF423) YR821_2757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2757 PF03466 LysR substrate binding domain YR821_2758 PF06004 Bacterial protein of unknown function (DUF903) YR821_2759 PF00266 Aminotransferase class-V YR821_2760 PF02657 Fe-S metabolism associated domain YR821_2761 PF00899 ThiF family YR821_2762 PF03562 MltA specific insert domain YR821_2762 PF06725 3D domain YR821_2763 PF01520 N-acetylmuramoyl-L-alanine amidase YR821_2763 PF11741 AMIN domain YR821_2764 PF00696 Amino acid kinase family YR821_2764 PF00583 Acetyltransferase (GNAT) family YR821_2765 PF13538 UvrD-like helicase C-terminal domain YR821_2766 PF12705 PD-(D/E)XK nuclease superfamily YR821_2766 PF00580 UvrD/REP helicase N-terminal domain YR821_2766 PF13361 UvrD-like helicase C-terminal domain YR821_2767 PF00675 Insulinase (Peptidase family M16) YR821_2767 PF05193 Peptidase M16 inactive domain YR821_2767 PF16187 Middle or third domain of peptidase_M16 YR821_2768 PF17946 RecC C-terminal domain YR821_2769 PF12528 Type II secretion prepilin peptidase dependent protein C YR821_2769 PF07963 Prokaryotic N-terminal methylation motif YR821_2772 PF07963 Prokaryotic N-terminal methylation motif YR821_2772 PF00114 Pilin (bacterial filament) YR821_2773 PF00303 Thymidylate synthase YR821_2774 PF01790 Prolipoprotein diacylglyceryl transferase YR821_2775 PF02896 PEP-utilising enzyme, TIM barrel domain YR821_2775 PF01590 GAF domain YR821_2775 PF05524 PEP-utilising enzyme, N-terminal YR821_2775 PF00391 PEP-utilising enzyme, mobile domain YR821_2776 PF00293 NUDIX domain YR821_2777 PF02976 DNA mismatch repair enzyme MutH YR821_2778 PF03741 Integral membrane protein TerC family YR821_2779 PF00248 Aldo/keto reductase family YR821_2780 PF07690 Major Facilitator Superfamily YR821_2781 PF01553 Acyltransferase YR821_2781 PF00501 AMP-binding enzyme YR821_2781 PF13193 AMP-binding enzyme C-terminal domain YR821_2782 PF00356 Bacterial regulatory proteins, lacI family YR821_2783 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YR821_2783 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YR821_2784 PF03466 LysR substrate binding domain YR821_2784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2785 PF03466 LysR substrate binding domain YR821_2794 PF07963 Prokaryotic N-terminal methylation motif YR821_2794 PF11612 Type II secretion system (T2SS), protein J YR821_2795 PF07963 Prokaryotic N-terminal methylation motif YR821_2795 PF02501 Type II secretion system (T2SS), protein I YR821_2797 PF07963 Prokaryotic N-terminal methylation motif YR821_2797 PF08334 Type II secretion system (T2SS), protein G YR821_2798 PF00482 Type II secretion system (T2SS), protein F YR821_2799 PF00437 Type II/IV secretion system protein YR821_2800 PF00263 Bacterial type II and III secretion system protein YR821_2800 PF03958 Bacterial type II/III secretion system short domain YR821_2807 PF00005 ABC transporter YR821_2808 PF02405 Permease MlaE YR821_2809 PF01381 Helix-turn-helix YR821_2812 PF02796 Helix-turn-helix domain of resolvase YR821_2812 PF00239 Resolvase, N terminal domain YR821_2816 PF00152 tRNA synthetases class II (D, K and N) YR821_2816 PF01336 OB-fold nucleic acid binding domain YR821_2817 PF03462 PCRF domain YR821_2817 PF00472 RF-1 domain YR821_2818 PF01368 DHH family YR821_2818 PF02272 DHHA1 domain YR821_2818 PF17768 RecJ OB domain YR821_2819 PF10411 Disulfide bond isomerase protein N-terminus YR821_2819 PF13098 Thioredoxin-like domain YR821_2820 PF02899 Phage integrase, N-terminal SAM-like domain YR821_2820 PF00589 Phage integrase family YR821_2821 PF00258 Flavodoxin YR821_2822 PF07254 Membrane-bound toxin component of toxin-antitoxin system YR821_2823 PF03937 Flavinator of succinate dehydrogenase YR821_2824 PF01571 Aminomethyltransferase folate-binding domain YR821_2825 PF03006 Haemolysin-III related YR821_2828 PF02347 Glycine cleavage system P-protein YR821_2829 PF01597 Glycine cleavage H-protein YR821_2830 PF01571 Aminomethyltransferase folate-binding domain YR821_2830 PF08669 Glycine cleavage T-protein C-terminal barrel domain YR821_2832 PF01494 FAD binding domain YR821_2833 PF01494 FAD binding domain YR821_2834 PF00557 Metallopeptidase family M24 YR821_2834 PF05195 Aminopeptidase P, N-terminal domain YR821_2835 PF03695 Uncharacterised protein family (UPF0149) YR821_2836 PF05164 Cell division protein ZapA YR821_2837 PF01812 5-formyltetrahydrofolate cyclo-ligase family YR821_2838 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YR821_2838 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YR821_2838 PF01842 ACT domain YR821_2839 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YR821_2841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2841 PF03466 LysR substrate binding domain YR821_2842 PF04402 Protein of unknown function (DUF541) YR821_2843 PF01810 LysE type translocator YR821_2844 PF05552 Conserved TM helix YR821_2844 PF00924 Mechanosensitive ion channel YR821_2845 PF01116 Fructose-bisphosphate aldolase class-II YR821_2846 PF00162 Phosphoglycerate kinase YR821_2847 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YR821_2847 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YR821_2848 PF02779 Transketolase, pyrimidine binding domain YR821_2848 PF02780 Transketolase, C-terminal domain YR821_2848 PF00456 Transketolase, thiamine diphosphate binding domain YR821_2851 PF17810 Arginine decarboxylase helical bundle domain YR821_2851 PF17944 Arginine decarboxylase C-terminal helical extension YR821_2851 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YR821_2853 PF02773 S-adenosylmethionine synthetase, C-terminal domain YR821_2853 PF02772 S-adenosylmethionine synthetase, central domain YR821_2853 PF00438 S-adenosylmethionine synthetase, N-terminal domain YR821_2855 PF04143 Sulphur transport YR821_2857 PF10263 SprT-like family YR821_2857 PF17283 SprT-like zinc ribbon domain YR821_2858 PF04231 Endonuclease I YR821_2859 PF04452 RNA methyltransferase YR821_2860 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YR821_2860 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YR821_2861 PF02622 Uncharacterized ACR, COG1678 YR821_2862 PF03652 Holliday junction resolvase YR821_2863 PF00795 Carbon-nitrogen hydrolase YR821_2864 PF04371 Porphyromonas-type peptidyl-arginine deiminase YR821_2865 PF00437 Type II/IV secretion system protein YR821_2866 PF01168 Alanine racemase, N-terminal domain YR821_2867 PF14748 Pyrroline-5-carboxylate reductase dimerisation YR821_2867 PF03807 NADP oxidoreductase coenzyme F420-dependent YR821_2868 PF02325 YGGT family YR821_2869 PF02594 Uncharacterised ACR, YggU family COG1872 YR821_2870 PF01725 Ham1 family YR821_2871 PF06969 HemN C-terminal domain YR821_2871 PF04055 Radical SAM superfamily YR821_2872 PF11101 Protein of unknown function (DUF2884) YR821_2873 PF04960 Glutaminase YR821_2874 PF04320 Protein with unknown function (DUF469) YR821_2875 PF02390 Putative methyltransferase YR821_2876 PF10576 Iron-sulfur binding domain of endonuclease III YR821_2876 PF00633 Helix-hairpin-helix motif YR821_2876 PF00730 HhH-GPD superfamily base excision DNA repair protein YR821_2876 PF14815 NUDIX domain YR821_2877 PF04362 Bacterial Fe(2+) trafficking YR821_2878 PF01464 Transglycosylase SLT domain YR821_2878 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YR821_2879 PF13356 Arm DNA-binding domain YR821_2879 PF14659 Phage integrase, N-terminal SAM-like domain YR821_2879 PF00589 Phage integrase family YR821_2880 PF00589 Phage integrase family YR821_2880 PF13356 Arm DNA-binding domain YR821_2884 PF02463 RecF/RecN/SMC N terminal domain YR821_2895 PF01926 50S ribosome-binding GTPase YR821_2900 PF06067 Domain of unknown function (DUF932) YR821_2902 PF03230 Antirestriction protein YR821_2903 PF04002 RadC-like JAB domain YR821_2906 PF06755 CbtA_toxin of type IV toxin-antitoxin system YR821_2907 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YR821_2916 PF00294 pfkB family carbohydrate kinase YR821_2918 PF02901 Pyruvate formate lyase-like YR821_2918 PF01228 Glycine radical YR821_2919 PF00871 Acetokinase family YR821_2920 PF01490 Transmembrane amino acid transporter protein YR821_2921 PF00291 Pyridoxal-phosphate dependent enzyme YR821_2923 PF00501 AMP-binding enzyme YR821_2923 PF13193 AMP-binding enzyme C-terminal domain YR821_2923 PF00668 Condensation domain YR821_2923 PF00550 Phosphopantetheine attachment site YR821_2923 PF00975 Thioesterase domain YR821_2925 PF00857 Isochorismatase family YR821_2925 PF00550 Phosphopantetheine attachment site YR821_2926 PF00501 AMP-binding enzyme YR821_2926 PF13193 AMP-binding enzyme C-terminal domain YR821_2927 PF00425 chorismate binding enzyme YR821_2928 PF01497 Periplasmic binding protein YR821_2929 PF05977 Transmembrane secretion effector YR821_2930 PF01032 FecCD transport family YR821_2931 PF01032 FecCD transport family YR821_2932 PF00005 ABC transporter YR821_2934 PF00501 AMP-binding enzyme YR821_2934 PF13193 AMP-binding enzyme C-terminal domain YR821_2934 PF00668 Condensation domain YR821_2934 PF00550 Phosphopantetheine attachment site YR821_2934 PF00975 Thioesterase domain YR821_2935 PF03621 MbtH-like protein YR821_2936 PF00756 Putative esterase YR821_2936 PF11806 Domain of unknown function (DUF3327) YR821_2937 PF07715 TonB-dependent Receptor Plug Domain YR821_2937 PF00593 TonB dependent receptor YR821_2938 PF08501 Shikimate dehydrogenase substrate binding domain YR821_2943 PF04972 BON domain YR821_2943 PF00263 Bacterial type II and III secretion system protein YR821_2943 PF13629 Pilus formation protein N terminal region YR821_2946 PF00437 Type II/IV secretion system protein YR821_2953 PF02472 Biopolymer transport protein ExbD/TolR YR821_2954 PF01618 MotA/TolQ/ExbB proton channel family YR821_2955 PF01053 Cys/Met metabolism PLP-dependent enzyme YR821_2956 PF09335 SNARE associated Golgi protein YR821_2957 PF06719 AraC-type transcriptional regulator N-terminus YR821_2957 PF12833 Helix-turn-helix domain YR821_2958 PF00465 Iron-containing alcohol dehydrogenase YR821_2960 PF00248 Aldo/keto reductase family YR821_2961 PF11842 Domain of unknown function (DUF3362) YR821_2961 PF04055 Radical SAM superfamily YR821_2961 PF08497 Radical SAM N-terminal YR821_2962 PF07731 Multicopper oxidase YR821_2962 PF07732 Multicopper oxidase YR821_2963 PF01553 Acyltransferase YR821_2964 PF03989 DNA gyrase C-terminal domain, beta-propeller YR821_2964 PF00521 DNA gyrase/topoisomerase IV, subunit A YR821_2965 PF02525 Flavodoxin-like fold YR821_2966 PF03466 LysR substrate binding domain YR821_2966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_2967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_2967 PF01751 Toprim domain YR821_2967 PF00986 DNA gyrase B subunit, carboxyl terminus YR821_2967 PF00204 DNA gyrase B YR821_2968 PF05728 Uncharacterised protein family (UPF0227) YR821_2969 PF00149 Calcineurin-like phosphoesterase YR821_2970 PF06853 Protein of unknown function (DUF1249) YR821_2971 PF00293 NUDIX domain YR821_2973 PF02321 Outer membrane efflux protein YR821_2974 PF06693 Protein of unknown function (DUF1190) YR821_2975 PF03738 Glutathionylspermidine synthase preATP-grasp YR821_2976 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YR821_2978 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YR821_2979 PF04380 Membrane fusogenic activity YR821_2981 PF01467 Cytidylyltransferase-like YR821_2981 PF00294 pfkB family carbohydrate kinase YR821_2982 PF08335 GlnD PII-uridylyltransferase YR821_2982 PF03710 Glutamate-ammonia ligase adenylyltransferase YR821_2983 PF01928 CYTH domain YR821_2984 PF08239 Bacterial SH3 domain YR821_2985 PF01966 HD domain YR821_2985 PF01743 Poly A polymerase head domain YR821_2985 PF12627 Probable RNA and SrmB- binding site of polymerase A YR821_2986 PF02673 Bacitracin resistance protein BacA YR821_2987 PF02152 Dihydroneopterin aldolase YR821_2988 PF02660 Glycerol-3-phosphate acyltransferase YR821_2989 PF00814 Glycoprotease family YR821_2990 PF01165 Ribosomal protein S21 YR821_2991 PF10410 DnaB-helicase binding domain of primase YR821_2991 PF08278 DNA primase DnaG DnaB-binding YR821_2991 PF08275 DNA primase catalytic core, N-terminal domain YR821_2991 PF01807 CHC2 zinc finger YR821_2992 PF03979 Sigma-70 factor, region 1.1 YR821_2992 PF04545 Sigma-70, region 4 YR821_2992 PF04542 Sigma-70 region 2 YR821_2992 PF04539 Sigma-70 region 3 YR821_2992 PF04546 Sigma-70, non-essential region YR821_2992 PF00140 Sigma-70 factor, region 1.2 YR821_2995 PF00106 short chain dehydrogenase YR821_2997 PF13276 HTH-like domain YR821_2997 PF00665 Integrase core domain YR821_2997 PF13333 Integrase core domain YR821_3002 PF01527 Transposase YR821_3004 PF08241 Methyltransferase domain YR821_3005 PF00535 Glycosyl transferase family 2 YR821_3009 PF13018 Extended Signal Peptide of Type V secretion system YR821_3009 PF05860 haemagglutination activity domain YR821_3009 PF04829 Pre-toxin domain with VENN motif YR821_3009 PF13332 Hemagglutinin repeat YR821_3013 PF13332 Hemagglutinin repeat YR821_3013 PF13018 Extended Signal Peptide of Type V secretion system YR821_3013 PF04829 Pre-toxin domain with VENN motif YR821_3013 PF05860 haemagglutination activity domain YR821_3015 PF13332 Hemagglutinin repeat YR821_3015 PF05594 Haemagluttinin repeat YR821_3015 PF05860 haemagglutination activity domain YR821_3015 PF04829 Pre-toxin domain with VENN motif YR821_3018 PF13018 Extended Signal Peptide of Type V secretion system YR821_3018 PF13332 Hemagglutinin repeat YR821_3018 PF05860 haemagglutination activity domain YR821_3018 PF04829 Pre-toxin domain with VENN motif YR821_3019 PF08479 POTRA domain, ShlB-type YR821_3019 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YR821_3019 PF17287 POTRA domain YR821_3021 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_3021 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YR821_3022 PF05175 Methyltransferase small domain YR821_3024 PF01863 Protein of unknown function DUF45 YR821_3025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YR821_3026 PF03741 Integral membrane protein TerC family YR821_3027 PF00375 Sodium:dicarboxylate symporter family YR821_3028 PF10688 Bacterial inner membrane protein YR821_3029 PF08666 SAF domain YR821_3029 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YR821_3030 PF08125 Mannitol dehydrogenase C-terminal domain YR821_3030 PF01232 Mannitol dehydrogenase Rossmann domain YR821_3031 PF02614 Glucuronate isomerase YR821_3033 PF07690 Major Facilitator Superfamily YR821_3034 PF00392 Bacterial regulatory proteins, gntR family YR821_3034 PF07729 FCD domain YR821_3036 PF09335 SNARE associated Golgi protein YR821_3037 PF13721 SecD export protein N-terminal TM region YR821_3039 PF05957 Bacterial protein of unknown function (DUF883) YR821_3040 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YR821_3041 PF13997 YqjK-like protein YR821_3042 PF07681 DoxX YR821_3043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_3043 PF03466 LysR substrate binding domain YR821_3044 PF02678 Pirin YR821_3044 PF17954 Quercetinase C-terminal cupin domain YR821_3046 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YR821_3047 PF04348 LppC putative lipoprotein YR821_3048 PF02021 Uncharacterised protein family UPF0102 YR821_3049 PF13580 SIS domain YR821_3050 PF04972 BON domain YR821_3051 PF00912 Transglycosylase YR821_3053 PF18415 Histidine kinase receptor ArcB trans-membrane domain YR821_3053 PF01627 Hpt domain YR821_3053 PF00989 PAS fold YR821_3053 PF00072 Response regulator receiver domain YR821_3053 PF00512 His Kinase A (phospho-acceptor) domain YR821_3053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_3054 PF04055 Radical SAM superfamily YR821_3054 PF16199 Radical_SAM C-terminal domain YR821_3055 PF00310 Glutamine amidotransferases class-II YR821_3055 PF04898 Glutamate synthase central domain YR821_3055 PF01645 Conserved region in glutamate synthase YR821_3055 PF01493 GXGXG motif YR821_3056 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_3056 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YR821_3058 PF04386 Stringent starvation protein B YR821_3059 PF02798 Glutathione S-transferase, N-terminal domain YR821_3059 PF00043 Glutathione S-transferase, C-terminal domain YR821_3060 PF00380 Ribosomal protein S9/S16 YR821_3061 PF00572 Ribosomal protein L13 YR821_3062 PF03969 AFG1-like ATPase YR821_3064 PF06295 Protein of unknown function (DUF1043) YR821_3065 PF00595 PDZ domain YR821_3065 PF13180 PDZ domain YR821_3066 PF13180 PDZ domain YR821_3067 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YR821_3068 PF01722 BolA-like protein YR821_3069 PF13466 STAS domain YR821_3070 PF05494 MlaC protein YR821_3071 PF02470 MlaD protein YR821_3072 PF02405 Permease MlaE YR821_3073 PF00005 ABC transporter YR821_3074 PF01699 Sodium/calcium exchanger protein YR821_3075 PF00571 CBS domain YR821_3075 PF01380 SIS domain YR821_3077 PF06835 Lipopolysaccharide-assembly, LptC-related YR821_3078 PF03968 OstA-like protein YR821_3079 PF12399 Branched-chain amino acid ATP-binding cassette transporter YR821_3079 PF00005 ABC transporter YR821_3080 PF00309 Sigma-54 factor, Activator interacting domain (AID) YR821_3080 PF04552 Sigma-54, DNA binding domain YR821_3080 PF04963 Sigma-54 factor, core binding domain YR821_3081 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YR821_3083 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YR821_3084 PF03668 P-loop ATPase protein family YR821_3085 PF00381 PTS HPr component phosphorylation site YR821_3087 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YR821_3087 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YR821_3088 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YR821_3088 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YR821_3089 PF01042 Endoribonuclease L-PSP YR821_3090 PF00128 Alpha amylase, catalytic domain YR821_3090 PF11941 Domain of unknown function (DUF3459) YR821_3091 PF02378 Phosphotransferase system, EIIC YR821_3091 PF00367 phosphotransferase system, EIIB YR821_3092 PF00356 Bacterial regulatory proteins, lacI family YR821_3093 PF00689 Cation transporting ATPase, C-terminus YR821_3093 PF00690 Cation transporter/ATPase, N-terminus YR821_3097 PF01272 Transcription elongation factor, GreA/GreB, C-term YR821_3097 PF14760 Rnk N-terminus YR821_3098 PF07361 Cytochrome b562 YR821_3099 PF01523 Putative modulator of DNA gyrase YR821_3100 PF04751 Protein of unknown function (DUF615) YR821_3101 PF01337 Barstar (barnase inhibitor) YR821_3102 PF00545 ribonuclease YR821_3103 PF00171 Aldehyde dehydrogenase family YR821_3104 PF04632 Fusaric acid resistance protein family YR821_3105 PF13533 Biotin-lipoyl like YR821_3106 PF07869 Protein of unknown function (DUF1656) YR821_3107 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_3107 PF03466 LysR substrate binding domain YR821_3108 PF01523 Putative modulator of DNA gyrase YR821_3109 PF00795 Carbon-nitrogen hydrolase YR821_3110 PF13502 AsmA-like C-terminal region YR821_3110 PF13116 Protein of unknown function YR821_3111 PF10150 Ribonuclease E/G family YR821_3111 PF00575 S1 RNA binding domain YR821_3112 PF02545 Maf-like protein YR821_3113 PF04093 rod shape-determining protein MreD YR821_3114 PF04085 rod shape-determining protein MreC YR821_3116 PF00563 EAL domain YR821_3116 PF17157 Gammaproteobacterial periplasmic sensor domain YR821_3116 PF00990 Diguanylate cyclase, GGDEF domain YR821_3117 PF00107 Zinc-binding dehydrogenase YR821_3117 PF08240 Alcohol dehydrogenase GroES-like domain YR821_3118 PF00174 Oxidoreductase molybdopterin binding domain YR821_3119 PF01794 Ferric reductase like transmembrane component YR821_3120 PF01220 Dehydroquinase class II YR821_3121 PF00364 Biotin-requiring enzyme YR821_3122 PF02785 Biotin carboxylase C-terminal domain YR821_3122 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YR821_3122 PF00289 Biotin carboxylase, N-terminal domain YR821_3123 PF06196 Protein of unknown function (DUF997) YR821_3124 PF00474 Sodium:solute symporter family YR821_3126 PF01207 Dihydrouridine synthase (Dus) YR821_3127 PF02954 Bacterial regulatory protein, Fis family YR821_3129 PF03279 Bacterial lipid A biosynthesis acyltransferase YR821_3130 PF00484 Carbonic anhydrase YR821_3131 PF04172 LrgB-like family YR821_3132 PF03788 LrgA family YR821_3133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_3133 PF03466 LysR substrate binding domain YR821_3134 PF00999 Sodium/hydrogen exchanger family YR821_3135 PF00860 Permease family YR821_3137 PF00436 Single-strand binding protein family YR821_3138 PF17755 UvrA DNA-binding domain YR821_3138 PF00005 ABC transporter YR821_3138 PF17760 UvrA interaction domain YR821_3139 PF04237 YjbR YR821_3140 PF00155 Aminotransferase class I and II YR821_3141 PF00842 Alanine racemase, C-terminal domain YR821_3141 PF01168 Alanine racemase, N-terminal domain YR821_3142 PF00772 DnaB-like helicase N terminal domain YR821_3142 PF03796 DnaB-like helicase C terminal domain YR821_3143 PF08240 Alcohol dehydrogenase GroES-like domain YR821_3143 PF00107 Zinc-binding dehydrogenase YR821_3144 PF09583 Phage shock protein G (Phageshock_PspG) YR821_3145 PF01207 Dihydrouridine synthase (Dus) YR821_3146 PF01475 Ferric uptake regulator family YR821_3147 PF01726 LexA DNA binding domain YR821_3147 PF00717 Peptidase S24-like YR821_3148 PF01219 Prokaryotic diacylglycerol kinase YR821_3149 PF01553 Acyltransferase YR821_3150 PF01040 UbiA prenyltransferase family YR821_3151 PF04345 Chorismate lyase YR821_3153 PF07148 Maltose operon periplasmic protein precursor (MalM) YR821_3154 PF02264 LamB porin YR821_3155 PF17912 MalK OB fold domain YR821_3155 PF00005 ABC transporter YR821_3159 PF01547 Bacterial extracellular solute-binding protein YR821_3160 PF00528 Binding-protein-dependent transport system inner membrane component YR821_3160 PF14785 Maltose transport system permease protein MalF P2 domain YR821_3161 PF00528 Binding-protein-dependent transport system inner membrane component YR821_3162 PF06146 Phosphate-starvation-inducible E YR821_3163 PF00342 Phosphoglucose isomerase YR821_3165 PF01842 ACT domain YR821_3165 PF00696 Amino acid kinase family YR821_3166 PF08479 POTRA domain, ShlB-type YR821_3166 PF17287 POTRA domain YR821_3166 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YR821_3167 PF13332 Hemagglutinin repeat YR821_3167 PF05860 haemagglutination activity domain YR821_3168 PF00872 Transposase, Mutator family YR821_3169 PF11924 Inverse autotransporter, beta-domain YR821_3169 PF09134 Invasin, domain 3 YR821_3169 PF07979 Intimin C-type lectin domain YR821_3169 PF02369 Bacterial Ig-like domain (group 1) YR821_3170 PF00872 Transposase, Mutator family YR821_3171 PF09134 Invasin, domain 3 YR821_3171 PF07979 Intimin C-type lectin domain YR821_3171 PF11924 Inverse autotransporter, beta-domain YR821_3171 PF02369 Bacterial Ig-like domain (group 1) YR821_3173 PF04488 Glycosyltransferase sugar-binding region containing DXD motif YR821_3175 PF00004 ATPase family associated with various cellular activities (AAA) YR821_3175 PF17758 Proteasomal ATPase OB N-terminal domain YR821_3175 PF16450 Proteasomal ATPase OB C-terminal domain YR821_3193 PF02574 Homocysteine S-methyltransferase YR821_3193 PF02607 B12 binding domain YR821_3193 PF02965 Vitamin B12 dependent methionine synthase, activation domain YR821_3193 PF02310 B12 binding domain YR821_3193 PF00809 Pterin binding enzyme YR821_3194 PF01614 Bacterial transcriptional regulator YR821_3194 PF09339 IclR helix-turn-helix domain YR821_3195 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YR821_3196 PF00463 Isocitrate lyase family YR821_3197 PF01274 Malate synthase YR821_3199 PF04204 Homoserine O-succinyltransferase YR821_3200 PF01808 AICARFT/IMPCHase bienzyme YR821_3200 PF02142 MGS-like domain YR821_3201 PF02844 Phosphoribosylglycinamide synthetase, N domain YR821_3201 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YR821_3201 PF02843 Phosphoribosylglycinamide synthetase, C domain YR821_3202 PF07356 Protein of unknown function (DUF1481) YR821_3203 PF00216 Bacterial DNA-binding protein YR821_3204 PF04222 Protein of unknown function (DUF416) YR821_3205 PF04493 Endonuclease V YR821_3206 PF01208 Uroporphyrinogen decarboxylase (URO-D) YR821_3207 PF09297 NADH pyrophosphatase zinc ribbon domain YR821_3207 PF00293 NUDIX domain YR821_3208 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YR821_3209 PF01964 Radical SAM ThiC family YR821_3209 PF13667 ThiC-associated domain YR821_3210 PF02581 Thiamine monophosphate synthase YR821_3211 PF00899 ThiF family YR821_3212 PF02597 ThiS family YR821_3213 PF05690 Thiazole biosynthesis protein ThiG YR821_3214 PF06968 Biotin and Thiamin Synthesis associated domain YR821_3214 PF04055 Radical SAM superfamily YR821_3215 PF00623 RNA polymerase Rpb1, domain 2 YR821_3215 PF04983 RNA polymerase Rpb1, domain 3 YR821_3215 PF05000 RNA polymerase Rpb1, domain 4 YR821_3215 PF04998 RNA polymerase Rpb1, domain 5 YR821_3215 PF04997 RNA polymerase Rpb1, domain 1 YR821_3216 PF04560 RNA polymerase Rpb2, domain 7 YR821_3216 PF00562 RNA polymerase Rpb2, domain 6 YR821_3216 PF04565 RNA polymerase Rpb2, domain 3 YR821_3216 PF04561 RNA polymerase Rpb2, domain 2 YR821_3216 PF04563 RNA polymerase beta subunit YR821_3216 PF10385 RNA polymerase beta subunit external 1 domain YR821_3217 PF00542 Ribosomal protein L7/L12 C-terminal domain YR821_3217 PF16320 Ribosomal protein L7/L12 dimerisation domain YR821_3218 PF00466 Ribosomal protein L10 YR821_3219 PF00687 Ribosomal protein L1p/L10e family YR821_3220 PF00298 Ribosomal protein L11, RNA binding domain YR821_3220 PF03946 Ribosomal protein L11, N-terminal domain YR821_3221 PF00467 KOW motif YR821_3221 PF02357 Transcription termination factor nusG YR821_3222 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YR821_3223 PF00009 Elongation factor Tu GTP binding domain YR821_3223 PF03144 Elongation factor Tu domain 2 YR821_3223 PF03143 Elongation factor Tu C-terminal domain YR821_3225 PF00485 Phosphoribulokinase / Uridine kinase family YR821_3226 PF02237 Biotin protein ligase C terminal domain YR821_3226 PF08279 HTH domain YR821_3226 PF03099 Biotin/lipoate A/B protein ligase family YR821_3227 PF01565 FAD binding domain YR821_3227 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YR821_3228 PF12724 Flavodoxin domain YR821_3229 PF02386 Cation transport protein YR821_3230 PF09186 Domain of unknown function (DUF1949) YR821_3230 PF01205 Uncharacterized protein family UPF0029 YR821_3231 PF00557 Metallopeptidase family M24 YR821_3232 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YR821_3232 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YR821_3232 PF00378 Enoyl-CoA hydratase/isomerase YR821_3233 PF02803 Thiolase, C-terminal domain YR821_3233 PF00108 Thiolase, N-terminal domain YR821_3234 PF00970 Oxidoreductase FAD-binding domain YR821_3234 PF00175 Oxidoreductase NAD-binding domain YR821_3235 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YR821_3237 PF02357 Transcription termination factor nusG YR821_3238 PF00490 Delta-aminolevulinic acid dehydratase YR821_3239 PF01026 TatD related DNase YR821_3240 PF00902 Sec-independent protein translocase protein (TatC) YR821_3242 PF02416 mttA/Hcf106 family YR821_3243 PF03109 ABC1 family YR821_3244 PF02036 SCP-2 sterol transfer family YR821_3245 PF01209 ubiE/COQ5 methyltransferase family YR821_3246 PF02646 RmuC family YR821_3247 PF09335 SNARE associated Golgi protein YR821_3248 PF02554 Carbon starvation protein CstA YR821_3248 PF13722 5TM C-terminal transporter carbon starvation CstA YR821_3250 PF01048 Phosphorylase superfamily YR821_3252 PF01738 Dienelactone hydrolase family YR821_3253 PF01717 Cobalamin-independent synthase, Catalytic domain YR821_3253 PF08267 Cobalamin-independent synthase, N-terminal domain YR821_3254 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_3254 PF03466 LysR substrate binding domain YR821_3256 PF03009 Glycerophosphoryl diester phosphodiesterase family YR821_3257 PF00005 ABC transporter YR821_3257 PF17912 MalK OB fold domain YR821_3258 PF00528 Binding-protein-dependent transport system inner membrane component YR821_3259 PF00528 Binding-protein-dependent transport system inner membrane component YR821_3260 PF13416 Bacterial extracellular solute-binding protein YR821_3268 PF00005 ABC transporter YR821_3269 PF00005 ABC transporter YR821_3269 PF12399 Branched-chain amino acid ATP-binding cassette transporter YR821_3270 PF02653 Branched-chain amino acid transport system / permease component YR821_3270 PF11862 Domain of unknown function (DUF3382) YR821_3271 PF02653 Branched-chain amino acid transport system / permease component YR821_3272 PF13458 Periplasmic binding protein YR821_3273 PF12568 Acetyltransferase (GNAT) domain, PanZ YR821_3274 PF02595 Glycerate kinase family YR821_3275 PF02447 GntP family permease YR821_3276 PF05651 Putative sugar diacid recognition YR821_3276 PF17853 GGDEF-like domain YR821_3276 PF13556 PucR C-terminal helix-turn-helix domain YR821_3277 PF04545 Sigma-70, region 4 YR821_3277 PF00140 Sigma-70 factor, region 1.2 YR821_3277 PF04542 Sigma-70 region 2 YR821_3278 PF02687 FtsX-like permease family YR821_3278 PF18075 FtsX extracellular domain YR821_3279 PF00005 ABC transporter YR821_3280 PF00448 SRP54-type protein, GTPase domain YR821_3280 PF02881 SRP54-type protein, helical bundle domain YR821_3280 PF00448 SRP54-type protein, GTPase domain YR821_3280 PF02881 SRP54-type protein, helical bundle domain YR821_3282 PF06611 Protein of unknown function (DUF1145) YR821_3285 PF07947 YhhN family YR821_3286 PF00403 Heavy-metal-associated domain YR821_3287 PF01206 Sulfurtransferase TusA YR821_3288 PF02592 Putative vitamin uptake transporter YR821_3289 PF08786 DcrB YR821_3290 PF13183 4Fe-4S dicluster domain YR821_3290 PF02754 Cysteine-rich domain YR821_3291 PF00890 FAD binding domain YR821_3292 PF01266 FAD dependent oxidoreductase YR821_3292 PF04324 BFD-like [2Fe-2S] binding domain YR821_3294 PF07690 Major Facilitator Superfamily YR821_3295 PF03009 Glycerophosphoryl diester phosphodiesterase family YR821_3297 PF12146 Serine aminopeptidase, S33 YR821_3298 PF01810 LysE type translocator YR821_3299 PF00270 DEAD/DEAH box helicase YR821_3299 PF00271 Helicase conserved C-terminal domain YR821_3299 PF00570 HRDC domain YR821_3299 PF16124 RecQ zinc-binding YR821_3299 PF09382 RQC domain YR821_3300 PF02253 Phospholipase A1 YR821_3301 PF03061 Thioesterase superfamily YR821_3302 PF00892 EamA-like transporter family YR821_3303 PF01544 CorA-like Mg2+ transporter protein YR821_3305 PF09370 Phosphoenolpyruvate hydrolase-like YR821_3308 PF13361 UvrD-like helicase C-terminal domain YR821_3308 PF00580 UvrD/REP helicase N-terminal domain YR821_3309 PF13419 Haloacid dehalogenase-like hydrolase YR821_3310 PF00589 Phage integrase family YR821_3310 PF02899 Phage integrase, N-terminal SAM-like domain YR821_3311 PF04340 Protein of unknown function, DUF484 YR821_3312 PF01678 Diaminopimelate epimerase YR821_3313 PF13627 Prokaryotic lipoprotein-attachment site YR821_3314 PF01491 Frataxin-like domain YR821_3315 PF12633 Adenylate cyclase NT domain YR821_3315 PF01295 Adenylate cyclase, class-I YR821_3316 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YR821_3316 PF03900 Porphobilinogen deaminase, C-terminal domain YR821_3317 PF02602 Uroporphyrinogen-III synthase HemD YR821_3318 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YR821_3319 PF07219 HemY protein N-terminus YR821_3319 PF07719 Tetratricopeptide repeat YR821_3321 PF00324 Amino acid permease YR821_3322 PF03808 Glycosyl transferase WecB/TagA/CpsF family YR821_3323 PF06899 WzyE protein, O-antigen assembly polymerase YR821_3324 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YR821_3325 PF01943 Polysaccharide biosynthesis protein YR821_3326 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YR821_3328 PF00483 Nucleotidyl transferase YR821_3329 PF16363 GDP-mannose 4,6 dehydratase YR821_3330 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YR821_3330 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YR821_3330 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YR821_3331 PF02350 UDP-N-acetylglucosamine 2-epimerase YR821_3332 PF02706 Chain length determinant protein YR821_3333 PF00953 Glycosyl transferase family 4 YR821_3334 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YR821_3334 PF07498 Rho termination factor, N-terminal domain YR821_3334 PF07497 Rho termination factor, RNA-binding domain YR821_3335 PF00085 Thioredoxin YR821_3336 PF00270 DEAD/DEAH box helicase YR821_3336 PF00271 Helicase conserved C-terminal domain YR821_3337 PF02541 Ppx/GppA phosphatase family YR821_3338 PF00580 UvrD/REP helicase N-terminal domain YR821_3338 PF13361 UvrD-like helicase C-terminal domain YR821_3340 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YR821_3340 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YR821_3341 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_3341 PF03466 LysR substrate binding domain YR821_3342 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YR821_3342 PF18416 N-acetylglucosamine binding protein domain 2 YR821_3343 PF00585 C-terminal regulatory domain of Threonine dehydratase YR821_3343 PF00291 Pyridoxal-phosphate dependent enzyme YR821_3344 PF00920 Dehydratase family YR821_3345 PF01063 Amino-transferase class IV YR821_3347 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YR821_3347 PF00205 Thiamine pyrophosphate enzyme, central domain YR821_3347 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YR821_3348 PF13335 Magnesium chelatase, subunit ChlI C-terminal YR821_3348 PF01078 Magnesium chelatase, subunit ChlI YR821_3349 PF04219 Protein of unknown function, DUF YR821_3350 PF03466 LysR substrate binding domain YR821_3350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_3352 PF01548 Transposase YR821_3352 PF02371 Transposase IS116/IS110/IS902 family YR821_3353 PF01527 Transposase YR821_3356 PF01177 Asp/Glu/Hydantoin racemase YR821_3357 PF07715 TonB-dependent Receptor Plug Domain YR821_3357 PF00593 TonB dependent receptor YR821_3358 PF05958 tRNA (Uracil-5-)-methyltransferase YR821_3359 PF07226 Protein of unknown function (DUF1422) YR821_3360 PF00440 Bacterial regulatory proteins, tetR family YR821_3361 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_3361 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YR821_3362 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_3362 PF03466 LysR substrate binding domain YR821_3363 PF00462 Glutaredoxin YR821_3363 PF08534 Redoxin YR821_3364 PF07992 Pyridine nucleotide-disulphide oxidoreductase YR821_3364 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YR821_3369 PF00529 HlyD membrane-fusion protein of T1SS YR821_3370 PF00005 ABC transporter YR821_3370 PF00664 ABC transporter transmembrane region YR821_3372 PF07715 TonB-dependent Receptor Plug Domain YR821_3372 PF00593 TonB dependent receptor YR821_3374 PF14698 Argininosuccinate lyase C-terminal YR821_3374 PF00206 Lyase YR821_3375 PF00764 Arginosuccinate synthase YR821_3376 PF00696 Amino acid kinase family YR821_3377 PF02774 Semialdehyde dehydrogenase, dimerisation domain YR821_3377 PF01118 Semialdehyde dehydrogenase, NAD binding domain YR821_3378 PF01546 Peptidase family M20/M25/M40 YR821_3378 PF07687 Peptidase dimerisation domain YR821_3380 PF00311 Phosphoenolpyruvate carboxylase YR821_3382 PF02219 Methylenetetrahydrofolate reductase YR821_3385 PF00742 Homoserine dehydrogenase YR821_3385 PF00696 Amino acid kinase family YR821_3385 PF03447 Homoserine dehydrogenase, NAD binding domain YR821_3386 PF01053 Cys/Met metabolism PLP-dependent enzyme YR821_3387 PF01340 Met Apo-repressor, MetJ YR821_3388 PF01197 Ribosomal protein L31 YR821_3389 PF17764 3′ DNA-binding domain (3′BD) YR821_3389 PF00271 Helicase conserved C-terminal domain YR821_3389 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YR821_3389 PF18074 Primosomal protein N C-terminal domain YR821_3389 PF00270 DEAD/DEAH box helicase YR821_3390 PF00356 Bacterial regulatory proteins, lacI family YR821_3391 PF05036 Sporulation related domain YR821_3392 PF00227 Proteasome subunit YR821_3393 PF00004 ATPase family associated with various cellular activities (AAA) YR821_3393 PF07724 AAA domain (Cdc48 subfamily) YR821_3393 PF10431 C-terminal, D2-small domain, of ClpB protein YR821_3394 PF01040 UbiA prenyltransferase family YR821_3395 PF03737 Aldolase/RraA YR821_3396 PF06005 Cell division protein ZapB YR821_3397 PF00230 Major intrinsic protein YR821_3398 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YR821_3398 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YR821_3399 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YR821_3400 PF07690 Major Facilitator Superfamily YR821_3401 PF00970 Oxidoreductase FAD-binding domain YR821_3401 PF00175 Oxidoreductase NAD-binding domain YR821_3402 PF05656 Protein of unknown function (DUF805) YR821_3403 PF07305 Protein of unknown function (DUF1454) YR821_3404 PF00121 Triosephosphate isomerase YR821_3406 PF00365 Phosphofructokinase YR821_3407 PF01545 Cation efflux family YR821_3407 PF16916 Dimerisation domain of Zinc Transporter YR821_3408 PF07813 LTXXQ motif family protein YR821_3409 PF00072 Response regulator receiver domain YR821_3409 PF00486 Transcriptional regulatory protein, C terminal YR821_3410 PF16527 Two-component sensor protein CpxA, periplasmic domain YR821_3410 PF00672 HAMP domain YR821_3410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_3410 PF00512 His Kinase A (phospho-acceptor) domain YR821_3411 PF00588 SpoU rRNA Methylase family YR821_3412 PF06426 Serine acetyltransferase, N-terminal YR821_3412 PF00132 Bacterial transferase hexapeptide (six repeats) YR821_3413 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YR821_3413 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YR821_3414 PF02556 Preprotein translocase subunit SecB YR821_3415 PF00462 Glutaredoxin YR821_3416 PF00581 Rhodanese-like domain YR821_3417 PF01676 Metalloenzyme superfamily YR821_3417 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YR821_3418 PF01551 Peptidase family M23 YR821_3419 PF04748 Divergent polysaccharide deacetylase YR821_3420 PF00107 Zinc-binding dehydrogenase YR821_3420 PF08240 Alcohol dehydrogenase GroES-like domain YR821_3421 PF00155 Aminotransferase class I and II YR821_3422 PF01370 NAD dependent epimerase/dehydratase family YR821_3423 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YR821_3424 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YR821_3425 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YR821_3426 PF00535 Glycosyl transferase family 2 YR821_3427 PF01467 Cytidylyltransferase-like YR821_3428 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YR821_3428 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YR821_3428 PF06827 Zinc finger found in FPG and IleRS YR821_3429 PF00471 Ribosomal protein L33 YR821_3430 PF00830 Ribosomal L28 family YR821_3431 PF04002 RadC-like JAB domain YR821_3432 PF04127 DNA / pantothenate metabolism flavoprotein YR821_3432 PF02441 Flavoprotein YR821_3433 PF00692 dUTPase YR821_3434 PF00440 Bacterial regulatory proteins, tetR family YR821_3435 PF00156 Phosphoribosyl transferase domain YR821_3436 PF01138 3' exoribonuclease family, domain 1 YR821_3436 PF03725 3' exoribonuclease family, domain 2 YR821_3437 PF08340 Domain of unknown function (DUF1732) YR821_3437 PF03755 YicC-like family, N-terminal region YR821_3439 PF03466 LysR substrate binding domain YR821_3439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YR821_3440 PF13426 PAS domain YR821_3440 PF00990 Diguanylate cyclase, GGDEF domain YR821_3440 PF00563 EAL domain YR821_3441 PF00378 Enoyl-CoA hydratase/isomerase YR821_3442 PF01773 Na+ dependent nucleoside transporter N-terminus YR821_3442 PF07662 Na+ dependent nucleoside transporter C-terminus YR821_3442 PF07670 Nucleoside recognition YR821_3445 PF03458 UPF0126 domain YR821_3446 PF01653 NAD-dependent DNA ligase adenylation domain YR821_3446 PF03120 NAD-dependent DNA ligase OB-fold domain YR821_3448 PF00625 Guanylate kinase YR821_3449 PF01192 RNA polymerase Rpb6 YR821_3450 PF13291 ACT domain YR821_3450 PF04607 Region found in RelA / SpoT proteins YR821_3450 PF02824 TGS domain YR821_3451 PF12105 SpoU, rRNA methylase, C-terminal YR821_3451 PF00588 SpoU rRNA Methylase family YR821_3452 PF17191 RecG wedge domain YR821_3452 PF00271 Helicase conserved C-terminal domain YR821_3452 PF00270 DEAD/DEAH box helicase YR821_3453 PF03616 Sodium/glutamate symporter YR821_3454 PF00860 Permease family YR821_3455 PF05170 AsmA family YR821_3456 PF00583 Acetyltransferase (GNAT) family YR821_3456 PF09500 Putative thioesterase (yiiD_Cterm) YR821_3457 PF02580 D-Tyr-tRNA(Tyr) deacylase YR821_3458 PF03631 Virulence factor BrkB YR821_3459 PF13419 Haloacid dehalogenase-like hydrolase YR821_3460 PF00009 Elongation factor Tu GTP binding domain YR821_3460 PF03144 Elongation factor Tu domain 2 YR821_3460 PF00679 Elongation factor G C-terminus YR821_3461 PF00120 Glutamine synthetase, catalytic domain YR821_3461 PF03951 Glutamine synthetase, beta-Grasp domain YR821_3462 PF00512 His Kinase A (phospho-acceptor) domain YR821_3462 PF00989 PAS fold YR821_3462 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YR821_3463 PF00158 Sigma-54 interaction domain YR821_3463 PF02954 Bacterial regulatory protein, Fis family YR821_3463 PF00072 Response regulator receiver domain YR821_3464 PF06969 HemN C-terminal domain YR821_3464 PF04055 Radical SAM superfamily YR821_3465 PF04220 Der GTPase activator (YihI) YR821_3466 PF01926 50S ribosome-binding GTPase YR821_3467 PF01367 5'-3' exonuclease, C-terminal SAM fold YR821_3467 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YR821_3467 PF00476 DNA polymerase family A YR821_3467 PF01612 3'-5' exonuclease YR821_3469 PF01323 DSBA-like thioredoxin domain YR821_3470 PF01636 Phosphotransferase enzyme family YR821_3471 PF06288 Protein of unknown function (DUF1040) YR821_3472 PF12804 MobA-like NTP transferase domain YR821_3473 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YR821_3474 PF07729 FCD domain YR821_3474 PF00392 Bacterial regulatory proteins, gntR family YR821_3475 PF00356 Bacterial regulatory proteins, lacI family YR821_3476 PF00294 pfkB family carbohydrate kinase YR821_3477 PF13407 Periplasmic binding protein domain YR821_3478 PF02653 Branched-chain amino acid transport system / permease component YR821_3479 PF00005 ABC transporter YR821_3480 PF05025 RbsD / FucU transport protein family YR821_3481 PF02705 K+ potassium transporter YR821_3482 PF07728 AAA domain (dynein-related subfamily) YR821_3482 PF17868 AAA lid domain YR821_3482 PF12592 Protein of unknown function (DUF3763) YR821_3483 PF05762 VWA domain containing CoxE-like protein YR821_3485 PF03590 Aspartate-ammonia ligase YR821_3486 PF01037 Lrp/AsnC ligand binding domain YR821_3487 PF00258 Flavodoxin YR821_3488 PF01134 Glucose inhibited division protein A YR821_3488 PF13932 GidA associated domain YR821_3489 PF02527 rRNA small subunit methyltransferase G YR821_3491 PF03899 ATP synthase I chain YR821_3492 PF00119 ATP synthase A chain YR821_3493 PF00137 ATP synthase subunit C YR821_3494 PF00430 ATP synthase B/B' CF(0) YR821_3495 PF00213 ATP synthase delta (OSCP) subunit YR821_3496 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YR821_3496 PF00306 ATP synthase alpha/beta chain, C terminal domain YR821_3496 PF02874 ATP synthase alpha/beta family, beta-barrel domain YR821_3497 PF00231 ATP synthase YR821_3498 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YR821_3498 PF02874 ATP synthase alpha/beta family, beta-barrel domain YR821_3499 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YR821_3499 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YR821_3500 PF00132 Bacterial transferase hexapeptide (six repeats) YR821_3500 PF12804 MobA-like NTP transferase domain YR821_3501 PF01380 SIS domain YR821_3502 PF12849 PBP superfamily domain YR821_3503 PF00528 Binding-protein-dependent transport system inner membrane component YR821_3504 PF00528 Binding-protein-dependent transport system inner membrane component YR821_3505 PF00005 ABC transporter YR821_3506 PF01895 PhoU domain YR821_3507 PF00497 Bacterial extracellular solute-binding proteins, family 3 YR821_3508 PF00528 Binding-protein-dependent transport system inner membrane component YR821_3509 PF00528 Binding-protein-dependent transport system inner membrane component YR821_3510 PF00860 Permease family YR821_3511 PF00672 HAMP domain YR821_3511 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YR821_3511 PF02203 Tar ligand binding domain homologue YR821_3513 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YR821_3513 PF02753 Pili assembly chaperone PapD, C-terminal domain YR821_3514 PF13953 PapC C-terminal domain YR821_3514 PF13954 PapC N-terminal domain YR821_3514 PF00577 Outer membrane usher protein YR821_3516 PF10396 GTP-binding protein TrmE N-terminus YR821_3516 PF12631 MnmE helical domain YR821_3516 PF01926 50S ribosome-binding GTPase YR821_3517 PF02096 60Kd inner membrane protein YR821_3517 PF14849 YidC periplasmic domain YR821_3518 PF01809 Putative membrane protein insertion efficiency factor YR821_3519 PF00825 Ribonuclease P YR821_3520 PF00468 Ribosomal protein L34 YR821_p10001 PF13614 AAA domain YR821_p10004 PF13614 AAA domain YR821_p10007 PF01526 Tn3 transposase DDE domain YR821_p10007 PF13700 Domain of unknown function (DUF4158) YR821_p10008 PF02796 Helix-turn-helix domain of resolvase YR821_p10008 PF00239 Resolvase, N terminal domain YR821_p10010 PF01051 Initiator Replication protein YR821_p10013 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH YR821_p10020 PF02796 Helix-turn-helix domain of resolvase YR821_p10020 PF00239 Resolvase, N terminal domain YR821_p20003 PF03432 Relaxase/Mobilisation nuclease domain YR821_p20003 PF18821 Large polyvalent protein-associated domain 7 YR821_p20007 PF06067 Domain of unknown function (DUF932) YR821_p20009 PF01381 Helix-turn-helix YR821_p20013 PF13610 DDE domain YR821_p20015 PF18607 ParA helix turn helix domain YR821_p20015 PF13614 AAA domain YR821_p20016 PF02195 ParB-like nuclease domain YR821_p20016 PF08775 ParB family YR821_p20018 PF13683 Integrase core domain YR821_p20018 PF13276 HTH-like domain YR821_p20019 PF13610 DDE domain YR821_p20023 PF13333 Integrase core domain YR821_p20023 PF00665 Integrase core domain YR821_p20023 PF13276 HTH-like domain YR821_p20024 PF01527 Transposase YR821_p20029 PF00589 Phage integrase family YR821_p20030 PF09299 Mu transposase, C-terminal YR821_p20030 PF00665 Integrase core domain YR821_p20034 PF00589 Phage integrase family YR821_p20037 PF02796 Helix-turn-helix domain of resolvase YR821_p20037 PF00239 Resolvase, N terminal domain YR821_p20040 PF13610 DDE domain YR821_p20043 PF02796 Helix-turn-helix domain of resolvase YR821_p20043 PF00239 Resolvase, N terminal domain YR821_p20046 PF17191 RecG wedge domain YR821_p20046 PF13749 Putative ATP-dependent DNA helicase recG C-terminal YR821_p20046 PF00270 DEAD/DEAH box helicase YR821_p20052 PF14319 Transposase zinc-binding domain YR821_p20052 PF04986 Putative transposase YR821_p20055 PF02796 Helix-turn-helix domain of resolvase YR821_p20055 PF00239 Resolvase, N terminal domain YR821_p20056 PF01526 Tn3 transposase DDE domain YR821_p20056 PF13700 Domain of unknown function (DUF4158) YR821_p20076 PF00437 Type II/IV secretion system protein YR821_p20079 PF01464 Transglycosylase SLT domain YR821_p20081 PF04917 Bacterial shufflon protein, N-terminal constant region YR821_p20084 PF00437 Type II/IV secretion system protein YR821_p20086 PF18818 Metallopeptidase superfamily domain YR821_p20086 PF08401 Domain of unknown function (DUF1738) YR821_p20086 PF13362 Toprim domain