locus-tag class description ND438_00005 PF00308 Bacterial dnaA protein ND438_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND438_00005 PF11638 DnaA N-terminal domain ND438_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND438_00010 PF02767 DNA polymerase III beta subunit, central domain ND438_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND438_00015 PF02463 RecF/RecN/SMC N terminal domain ND438_00020 PF00204 DNA gyrase B ND438_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND438_00020 PF18053 DNA gyrase B subunit insert domain ND438_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_00020 PF01751 Toprim domain ND438_00030 PF12566 Protein of unknown function (DUF3748) ND438_00030 PF07676 WD40-like Beta Propeller Repeat ND438_00035 PF07119 Protein of unknown function (DUF1375) ND438_00040 PF00011 Hsp20/alpha crystallin family ND438_00045 PF00011 Hsp20/alpha crystallin family ND438_00050 PF06826 Predicted Permease Membrane Region ND438_00050 PF02080 TrkA-C domain ND438_00055 PF00155 Aminotransferase class I and II ND438_00060 PF13488 Glycine zipper ND438_00060 PF00691 OmpA family ND438_00080 PF03352 Methyladenine glycosylase ND438_00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND438_00095 PF02092 Glycyl-tRNA synthetase beta subunit ND438_00095 PF05746 DALR anticodon binding domain ND438_00100 PF11254 Protein of unknown function (DUF3053) ND438_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND438_00130 PF02378 Phosphotransferase system, EIIC ND438_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND438_00135 PF01232 Mannitol dehydrogenase Rossmann domain ND438_00135 PF08125 Mannitol dehydrogenase C-terminal domain ND438_00140 PF05068 Mannitol repressor ND438_00145 PF10928 Protein of unknown function (DUF2810) ND438_00150 PF03473 MOSC domain ND438_00150 PF03475 3-alpha domain ND438_00155 PF00672 HAMP domain ND438_00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND438_00155 PF02203 Tar ligand binding domain homologue ND438_00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND438_00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND438_00165 PF02634 FdhD/NarQ family ND438_00175 PF09163 Formate dehydrogenase N, transmembrane ND438_00175 PF13247 4Fe-4S dicluster domain ND438_00180 PF01292 Prokaryotic cytochrome b561 ND438_00185 PF04216 Protein involved in formate dehydrogenase formation ND438_00190 PF03841 L-seryl-tRNA selenium transferase ND438_00190 PF12390 Selenocysteine synthase N terminal ND438_00195 PF03144 Elongation factor Tu domain 2 ND438_00195 PF00009 Elongation factor Tu GTP binding domain ND438_00195 PF09107 Elongation factor SelB, winged helix ND438_00195 PF09106 Elongation factor SelB, winged helix ND438_00200 PF01427 D-ala-D-ala dipeptidase ND438_00205 PF07690 Major Facilitator Superfamily ND438_00210 PF01757 Acyltransferase family ND438_00220 PF13356 Arm DNA-binding domain ND438_00220 PF14659 Phage integrase, N-terminal SAM-like domain ND438_00220 PF00589 Phage integrase family ND438_00230 PF04606 Ogr/Delta-like zinc finger ND438_00255 PF17391 Urocanase N-terminal domain ND438_00255 PF17392 Urocanase C-terminal domain ND438_00255 PF01175 Urocanase Rossmann-like domain ND438_00260 PF00221 Aromatic amino acid lyase ND438_00265 PF00324 Amino acid permease ND438_00275 PF12146 Serine aminopeptidase, S33 ND438_00280 PF08019 Phosphoethanolamine transferase EptA/EptB ND438_00280 PF00884 Sulfatase ND438_00285 PF00196 Bacterial regulatory proteins, luxR family ND438_00285 PF00072 Response regulator receiver domain ND438_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_00290 PF07730 Histidine kinase ND438_00290 PF05231 MASE1 ND438_00295 PF07690 Major Facilitator Superfamily ND438_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND438_00310 PF00528 Binding-protein-dependent transport system inner membrane component ND438_00315 PF00528 Binding-protein-dependent transport system inner membrane component ND438_00315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND438_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND438_00320 PF00005 ABC transporter ND438_00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND438_00325 PF00005 ABC transporter ND438_00330 PF11658 Cellulose biosynthesis protein BcsG ND438_00335 PF11120 Cellulose biosynthesis protein BcsF ND438_00340 PF10995 Cellulose biosynthesis GIL ND438_00350 PF06564 Cellulose biosynthesis protein BcsQ ND438_00355 PF07238 PilZ domain ND438_00355 PF00535 Glycosyl transferase family 2 ND438_00355 PF03552 Cellulose synthase ND438_00360 PF03170 Bacterial cellulose synthase subunit ND438_00365 PF01270 Glycosyl hydrolases family 8 ND438_00370 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND438_00375 PF00990 Diguanylate cyclase, GGDEF domain ND438_00375 PF17154 Gammaproteobacterial periplasmic sensor domain ND438_00375 PF00672 HAMP domain ND438_00375 PF00563 EAL domain ND438_00380 PF00375 Sodium:dicarboxylate symporter family ND438_00385 PF00675 Insulinase (Peptidase family M16) ND438_00385 PF05193 Peptidase M16 inactive domain ND438_00390 PF00294 pfkB family carbohydrate kinase ND438_00395 PF01361 Tautomerase enzyme ND438_00400 PF00563 EAL domain ND438_00405 PF02611 CDP-diacylglycerol pyrophosphatase ND438_00410 PF03631 Virulence factor BrkB ND438_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_00415 PF03466 LysR substrate binding domain ND438_00420 PF00375 Sodium:dicarboxylate symporter family ND438_00425 PF01053 Cys/Met metabolism PLP-dependent enzyme ND438_00430 PF02369 Bacterial Ig-like domain (group 1) ND438_00430 PF11924 Inverse autotransporter, beta-domain ND438_00430 PF07979 Intimin C-type lectin domain ND438_00430 PF09134 Invasin, domain 3 ND438_00435 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_00435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND438_00440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND438_00445 PF01432 Peptidase family M3 ND438_00450 PF04445 Putative SAM-dependent methyltransferase ND438_00455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND438_00455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND438_00460 PF00582 Universal stress protein family ND438_00465 PF10625 Universal stress protein B (UspB) ND438_00470 PF01384 Phosphate transporter family ND438_00480 PF01810 LysE type translocator ND438_00485 PF00583 Acetyltransferase (GNAT) family ND438_00495 PF02678 Pirin ND438_00495 PF17954 Quercetinase C-terminal cupin domain ND438_00500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND438_00500 PF00356 Bacterial regulatory proteins, lacI family ND438_00505 PF02447 GntP family permease ND438_00510 PF01202 Shikimate kinase ND438_00515 PF01914 MarC family integral membrane protein ND438_00520 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND438_00520 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND438_00525 PF06580 Histidine kinase ND438_00525 PF07694 5TMR of 5TMR-LYT ND438_00530 PF02806 Alpha amylase, C-terminal all-beta domain ND438_00530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND438_00530 PF00128 Alpha amylase, catalytic domain ND438_00535 PF00128 Alpha amylase, catalytic domain ND438_00535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND438_00535 PF18390 Glycogen debranching enzyme C-terminal domain ND438_00540 PF00483 Nucleotidyl transferase ND438_00545 PF00534 Glycosyl transferases group 1 ND438_00545 PF08323 Starch synthase catalytic domain ND438_00550 PF00343 Carbohydrate phosphorylase ND438_00555 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND438_00555 PF01266 FAD dependent oxidoreductase ND438_00560 PF08220 DeoR-like helix-turn-helix domain ND438_00560 PF00455 DeoR C terminal sensor domain ND438_00565 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND438_00565 PF01694 Rhomboid family ND438_00570 PF00581 Rhodanese-like domain ND438_00575 PF00196 Bacterial regulatory proteins, luxR family ND438_00575 PF17874 MalT-like TPR region ND438_00580 PF00343 Carbohydrate phosphorylase ND438_00585 PF02446 4-alpha-glucanotransferase ND438_00590 PF01521 Iron-sulphur cluster biosynthesis ND438_00590 PF01106 NifU-like domain ND438_00595 PF00156 Phosphoribosyl transferase domain ND438_00600 PF00561 alpha/beta hydrolase fold ND438_00610 PF09012 FeoC like transcriptional regulator ND438_00615 PF07664 Ferrous iron transport protein B C terminus ND438_00615 PF07670 Nucleoside recognition ND438_00615 PF02421 Ferrous iron transport protein B ND438_00615 PF17910 FeoB cytosolic helical domain ND438_00620 PF04023 FeoA domain ND438_00625 PF16921 Tex protein YqgF-like domain ND438_00625 PF09371 Tex-like protein N-terminal domain ND438_00625 PF00575 S1 RNA binding domain ND438_00625 PF17674 HHH domain ND438_00650 PF03449 Transcription elongation factor, N-terminal ND438_00650 PF01272 Transcription elongation factor, GreA/GreB, C-term ND438_00655 PF00486 Transcriptional regulatory protein, C terminal ND438_00655 PF00072 Response regulator receiver domain ND438_00660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_00660 PF00512 His Kinase A (phospho-acceptor) domain ND438_00660 PF00672 HAMP domain ND438_00665 PF01293 Phosphoenolpyruvate carboxykinase ND438_00670 PF01430 Hsp33 protein ND438_00675 PF01479 S4 domain ND438_00680 PF13419 Haloacid dehalogenase-like hydrolase ND438_00685 PF07095 Intracellular growth attenuator protein IgaA ND438_00690 PF00293 NUDIX domain ND438_00695 PF00905 Penicillin binding protein transpeptidase domain ND438_00695 PF00912 Transglycosylase ND438_00695 PF17092 Penicillin-binding protein OB-like domain ND438_00720 PF03958 Bacterial type II/III secretion system short domain ND438_00720 PF00263 Bacterial type II and III secretion system protein ND438_00725 PF01202 Shikimate kinase ND438_00730 PF01761 3-dehydroquinate synthase ND438_00735 PF05036 Sporulation related domain ND438_00740 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND438_00745 PF00834 Ribulose-phosphate 3 epimerase family ND438_00750 PF13419 Haloacid dehalogenase-like hydrolase ND438_00755 PF00579 tRNA synthetases class I (W and Y) ND438_00760 PF10414 Sirohaem synthase dimerisation region ND438_00760 PF14824 Sirohaem biosynthesis protein central ND438_00760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND438_00765 PF01226 Formate/nitrite transporter ND438_00770 PF13806 Rieske-like [2Fe-2S] domain ND438_00775 PF04324 BFD-like [2Fe-2S] binding domain ND438_00775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND438_00775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND438_00775 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_00775 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND438_00780 PF07969 Amidohydrolase family ND438_00785 PF07690 Major Facilitator Superfamily ND438_00800 PF00356 Bacterial regulatory proteins, lacI family ND438_00805 PF02056 Family 4 glycosyl hydrolase ND438_00805 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND438_00810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND438_00815 PF00117 Glutamine amidotransferase class-I ND438_00820 PF00202 Aminotransferase class-III ND438_00825 PF12805 FUSC-like inner membrane protein yccS ND438_00830 PF00027 Cyclic nucleotide-binding domain ND438_00830 PF13545 Crp-like helix-turn-helix domain ND438_00835 PF02566 OsmC-like protein ND438_00855 PF00156 Phosphoribosyl transferase domain ND438_00860 PF00291 Pyridoxal-phosphate dependent enzyme ND438_00865 PF00485 Phosphoribulokinase / Uridine kinase family ND438_00870 PF06794 Uncharacterised protein family (UPF0270) ND438_00875 PF00561 alpha/beta hydrolase fold ND438_00880 PF01810 LysE type translocator ND438_00885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND438_00890 PF00535 Glycosyl transferase family 2 ND438_00895 PF12848 ABC transporter ND438_00895 PF00005 ABC transporter ND438_00900 PF02525 Flavodoxin-like fold ND438_00905 PF02254 TrkA-N domain ND438_00905 PF00999 Sodium/hydrogen exchanger family ND438_00910 PF09526 Probable metal-binding protein (DUF2387) ND438_00915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND438_00920 PF04102 SlyX ND438_00925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND438_00925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND438_00930 PF13309 HTH domain ND438_00930 PF08348 YheO-like PAS domain ND438_00935 PF02635 DsrE/DsrF-like family ND438_00940 PF02635 DsrE/DsrF-like family ND438_00945 PF04077 DsrH like protein ND438_00950 PF00164 Ribosomal protein S12/S23 ND438_00955 PF00177 Ribosomal protein S7p/S5e ND438_00960 PF00009 Elongation factor Tu GTP binding domain ND438_00960 PF03144 Elongation factor Tu domain 2 ND438_00960 PF00679 Elongation factor G C-terminus ND438_00960 PF03764 Elongation factor G, domain IV ND438_00960 PF14492 Elongation Factor G, domain II ND438_00965 PF03143 Elongation factor Tu C-terminal domain ND438_00965 PF00009 Elongation factor Tu GTP binding domain ND438_00965 PF03144 Elongation factor Tu domain 2 ND438_00970 PF04324 BFD-like [2Fe-2S] binding domain ND438_00975 PF00210 Ferritin-like domain ND438_00980 PF00338 Ribosomal protein S10p/S20e ND438_00985 PF00297 Ribosomal protein L3 ND438_00990 PF00573 Ribosomal protein L4/L1 family ND438_00995 PF00276 Ribosomal protein L23 ND438_01000 PF00181 Ribosomal Proteins L2, RNA binding domain ND438_01000 PF03947 Ribosomal Proteins L2, C-terminal domain ND438_01005 PF00203 Ribosomal protein S19 ND438_01010 PF00237 Ribosomal protein L22p/L17e ND438_01015 PF07650 KH domain ND438_01015 PF00189 Ribosomal protein S3, C-terminal domain ND438_01020 PF00252 Ribosomal protein L16p/L10e ND438_01025 PF00831 Ribosomal L29 protein ND438_01030 PF00366 Ribosomal protein S17 ND438_01035 PF00238 Ribosomal protein L14p/L23e ND438_01040 PF00467 KOW motif ND438_01040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND438_01045 PF00673 ribosomal L5P family C-terminus ND438_01045 PF00281 Ribosomal protein L5 ND438_01050 PF00253 Ribosomal protein S14p/S29e ND438_01055 PF00410 Ribosomal protein S8 ND438_01060 PF00347 Ribosomal protein L6 ND438_01065 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND438_01070 PF00333 Ribosomal protein S5, N-terminal domain ND438_01070 PF03719 Ribosomal protein S5, C-terminal domain ND438_01075 PF00327 Ribosomal protein L30p/L7e ND438_01080 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND438_01085 PF00344 SecY translocase ND438_01090 PF00444 Ribosomal protein L36 ND438_01095 PF00416 Ribosomal protein S13/S18 ND438_01100 PF00411 Ribosomal protein S11 ND438_01105 PF00163 Ribosomal protein S4/S9 N-terminal domain ND438_01105 PF01479 S4 domain ND438_01110 PF01000 RNA polymerase Rpb3/RpoA insert domain ND438_01110 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND438_01110 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND438_01115 PF01196 Ribosomal protein L17 ND438_01120 PF13411 MerR HTH family regulatory protein ND438_01125 PF03889 Alternative ribosome-rescue factor A ND438_01130 PF01741 Large-conductance mechanosensitive channel, MscL ND438_01135 PF02080 TrkA-C domain ND438_01135 PF02254 TrkA-N domain ND438_01140 PF01189 16S rRNA methyltransferase RsmB/F ND438_01140 PF01029 NusB family ND438_01145 PF00551 Formyl transferase ND438_01145 PF02911 Formyl transferase, C-terminal domain ND438_01150 PF01327 Polypeptide deformylase ND438_01155 PF02481 DNA recombination-mediator protein A ND438_01155 PF17782 DprA winged helix domain ND438_01160 PF04361 Protein of unknown function (DUF494) ND438_01165 PF01396 Topoisomerase DNA binding C4 zinc finger ND438_01170 PF01300 Telomere recombination ND438_01175 PF08501 Shikimate dehydrogenase substrate binding domain ND438_01175 PF01488 Shikimate / quinate 5-dehydrogenase ND438_01175 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND438_01180 PF00132 Bacterial transferase hexapeptide (six repeats) ND438_01210 PF00474 Sodium:solute symporter family ND438_01215 PF04341 Protein of unknown function, DUF485 ND438_01220 PF13193 AMP-binding enzyme C-terminal domain ND438_01220 PF00501 AMP-binding enzyme ND438_01220 PF16177 Acetyl-coenzyme A synthetase N-terminus ND438_01225 PF00375 Sodium:dicarboxylate symporter family ND438_01235 PF04143 Sulphur transport ND438_01240 PF01206 Sulfurtransferase TusA ND438_01245 PF02719 Polysaccharide biosynthesis protein ND438_01250 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND438_01255 PF02350 UDP-N-acetylglucosamine 2-epimerase ND438_01260 PF08666 SAF domain ND438_01260 PF03102 NeuB family ND438_01270 PF00483 Nucleotidyl transferase ND438_01280 PF02348 Cytidylyltransferase ND438_01280 PF13472 GDSL-like Lipase/Acylhydrolase family ND438_01305 PF00795 Carbon-nitrogen hydrolase ND438_01305 PF02540 NAD synthase ND438_01310 PF00117 Glutamine amidotransferase class-I ND438_01315 PF00977 Histidine biosynthesis protein ND438_01320 PF02719 Polysaccharide biosynthesis protein ND438_01320 PF08485 Polysaccharide biosynthesis protein C-terminal ND438_01325 PF01370 NAD dependent epimerase/dehydratase family ND438_01330 PF02350 UDP-N-acetylglucosamine 2-epimerase ND438_01355 PF02683 Cytochrome C biogenesis protein transmembrane region ND438_01355 PF11412 Disulphide bond corrector protein DsbC ND438_01360 PF03091 CutA1 divalent ion tolerance protein ND438_01365 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND438_01370 PF10415 Fumarase C C-terminus ND438_01370 PF00206 Lyase ND438_01375 PF04186 FxsA cytoplasmic membrane protein ND438_01380 PF00166 Chaperonin 10 Kd subunit ND438_01385 PF00118 TCP-1/cpn60 chaperonin family ND438_01390 PF13698 Domain of unknown function (DUF4156) ND438_01395 PF04055 Radical SAM superfamily ND438_01400 PF08207 Elongation factor P (EF-P) KOW-like domain ND438_01400 PF01132 Elongation factor P (EF-P) OB domain ND438_01400 PF09285 Elongation factor P, C-terminal ND438_01405 PF18416 N-acetylglucosamine binding protein domain 2 ND438_01405 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND438_01410 PF00196 Bacterial regulatory proteins, luxR family ND438_01420 PF02753 Pili assembly chaperone PapD, C-terminal domain ND438_01420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_01425 PF13953 PapC C-terminal domain ND438_01425 PF13954 PapC N-terminal domain ND438_01425 PF00577 Outer membrane usher protein ND438_01430 PF00419 Fimbrial protein ND438_01435 PF00893 Small Multidrug Resistance protein ND438_01440 PF08212 Lipocalin-like domain ND438_01445 PF02313 Fumarate reductase subunit D ND438_01450 PF02300 Fumarate reductase subunit C ND438_01455 PF13085 2Fe-2S iron-sulfur cluster binding domain ND438_01455 PF13183 4Fe-4S dicluster domain ND438_01460 PF00890 FAD binding domain ND438_01460 PF02910 Fumarate reductase flavoprotein C-term ND438_01465 PF00152 tRNA synthetases class II (D, K and N) ND438_01470 PF00924 Mechanosensitive ion channel ND438_01470 PF12795 Mechanosensitive ion channel porin domain ND438_01470 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND438_01475 PF02666 Phosphatidylserine decarboxylase ND438_01480 PF03193 RsgA GTPase ND438_01485 PF00929 Exonuclease ND438_01505 PF08331 Domain of unknown function (DUF1730) ND438_01510 PF01256 Carbohydrate kinase ND438_01510 PF03853 YjeF-related protein N-terminus ND438_01515 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND438_01520 PF01520 N-acetylmuramoyl-L-alanine amidase ND438_01525 PF01119 DNA mismatch repair protein, C-terminal domain ND438_01525 PF08676 MutL C terminal dimerisation domain ND438_01535 PF17209 Hfq protein ND438_01540 PF16360 GTP-binding GTPase Middle Region ND438_01540 PF01926 50S ribosome-binding GTPase ND438_01540 PF13167 GTP-binding GTPase N-terminal ND438_01545 PF12221 Bacterial membrane protein N terminal ND438_01545 PF01145 SPFH domain / Band 7 family ND438_01550 PF01145 SPFH domain / Band 7 family ND438_01555 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND438_01560 PF00709 Adenylosuccinate synthetase ND438_01565 PF02082 Transcriptional regulator ND438_01570 PF17876 Cold shock domain ND438_01570 PF08461 Ribonuclease R winged-helix domain ND438_01570 PF08206 Ribonuclease B OB domain ND438_01570 PF00773 RNB domain ND438_01570 PF00575 S1 RNA binding domain ND438_01575 PF00588 SpoU rRNA Methylase family ND438_01575 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND438_01595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_01600 PF13953 PapC C-terminal domain ND438_01600 PF13954 PapC N-terminal domain ND438_01600 PF00577 Outer membrane usher protein ND438_01620 PF00326 Prolyl oligopeptidase family ND438_01630 PF01250 Ribosomal protein S6 ND438_01635 PF00436 Single-strand binding protein family ND438_01640 PF01084 Ribosomal protein S18 ND438_01645 PF03948 Ribosomal protein L9, C-terminal domain ND438_01645 PF01281 Ribosomal protein L9, N-terminal domain ND438_01650 PF04225 Opacity-associated protein A LysM-like domain ND438_01650 PF08525 Opacity-associated protein A N-terminal motif ND438_01655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND438_01655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND438_01660 PF01814 Hemerythrin HHE cation binding domain ND438_01660 PF04405 Domain of Unknown function (DUF542) ND438_01665 PF02872 5'-nucleotidase, C-terminal domain ND438_01665 PF00149 Calcineurin-like phosphoesterase ND438_01670 PF00459 Inositol monophosphatase family ND438_01675 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND438_01680 PF06526 Protein of unknown function (DUF1107) ND438_01685 PF01595 Cyclin M transmembrane N-terminal domain ND438_01685 PF03471 Transporter associated domain ND438_01685 PF00571 CBS domain ND438_01690 PF01625 Peptide methionine sulfoxide reductase ND438_01695 PF01103 Surface antigen ND438_01695 PF17243 POTRA domain TamA domain 1 ND438_01695 PF07244 Surface antigen variable number repeat ND438_01700 PF04357 TamB, inner membrane protein subunit of TAM complex ND438_01705 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND438_01710 PF00719 Inorganic pyrophosphatase ND438_01715 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND438_01720 PF01225 Mur ligase family, catalytic domain ND438_01720 PF02875 Mur ligase family, glutamate ligase domain ND438_01720 PF08245 Mur ligase middle domain ND438_01725 PF02863 Arginine repressor, C-terminal domain ND438_01725 PF01316 Arginine repressor, DNA binding domain ND438_01730 PF00056 lactate/malate dehydrogenase, NAD binding domain ND438_01730 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND438_01735 PF13693 Winged helix-turn-helix DNA-binding ND438_01750 PF00348 Polyprenyl synthetase ND438_01755 PF00829 Ribosomal prokaryotic L21 protein ND438_01760 PF01016 Ribosomal L27 protein ND438_01765 PF00892 EamA-like transporter family ND438_01770 PF01018 GTP1/OBG ND438_01770 PF01926 50S ribosome-binding GTPase ND438_01775 PF00512 His Kinase A (phospho-acceptor) domain ND438_01775 PF00672 HAMP domain ND438_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_01780 PF00486 Transcriptional regulatory protein, C terminal ND438_01780 PF00072 Response regulator receiver domain ND438_01785 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND438_01790 PF01272 Transcription elongation factor, GreA/GreB, C-term ND438_01790 PF03449 Transcription elongation factor, N-terminal ND438_01795 PF01985 CRS1 / YhbY (CRM) domain ND438_01800 PF01728 FtsJ-like methyltransferase ND438_01805 PF17862 AAA+ lid domain ND438_01805 PF06480 FtsH Extracellular ND438_01805 PF01434 Peptidase family M41 ND438_01805 PF00004 ATPase family associated with various cellular activities (AAA) ND438_01810 PF00809 Pterin binding enzyme ND438_01815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND438_01815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND438_01815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND438_01815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND438_01820 PF03840 Preprotein translocase SecG subunit ND438_01835 PF02576 RimP N-terminal domain ND438_01835 PF17384 RimP C-terminal SH3 domain ND438_01840 PF13184 NusA-like KH domain ND438_01840 PF00575 S1 RNA binding domain ND438_01840 PF08529 NusA N-terminal domain ND438_01845 PF00009 Elongation factor Tu GTP binding domain ND438_01845 PF04760 Translation initiation factor IF-2, N-terminal region ND438_01845 PF11987 Translation-initiation factor 2 ND438_01845 PF03144 Elongation factor Tu domain 2 ND438_01845 PF08364 Bacterial translation initiation factor IF-2 associated region ND438_01850 PF02033 Ribosome-binding factor A ND438_01855 PF09157 Pseudouridine synthase II TruB, C-terminal ND438_01855 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND438_01855 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND438_01860 PF00312 Ribosomal protein S15 ND438_01865 PF00013 KH domain ND438_01865 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND438_01865 PF01138 3' exoribonuclease family, domain 1 ND438_01865 PF03725 3' exoribonuclease family, domain 2 ND438_01865 PF00575 S1 RNA binding domain ND438_01870 PF07719 Tetratricopeptide repeat ND438_01870 PF13181 Tetratricopeptide repeat ND438_01875 PF00270 DEAD/DEAH box helicase ND438_01875 PF12343 Cold shock protein DEAD box A ND438_01875 PF00271 Helicase conserved C-terminal domain ND438_01875 PF03880 DbpA RNA binding domain ND438_01880 PF00296 Luciferase-like monooxygenase ND438_01890 PF03313 Serine dehydratase alpha chain ND438_01895 PF01136 Peptidase family U32 ND438_01900 PF01136 Peptidase family U32 ND438_01905 PF02036 SCP-2 sterol transfer family ND438_01910 PF13508 Acetyltransferase (GNAT) domain ND438_01915 PF01541 GIY-YIG catalytic domain ND438_01920 PF13520 Amino acid permease ND438_01925 PF01276 Orn/Lys/Arg decarboxylase, major domain ND438_01925 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND438_01925 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND438_01930 PF10940 Protein of unknown function (DUF2618) ND438_01940 PF13460 NAD(P)H-binding ND438_01945 PF12706 Beta-lactamase superfamily domain ND438_01955 PF07969 Amidohydrolase family ND438_01960 PF00005 ABC transporter ND438_01965 PF00005 ABC transporter ND438_01970 PF06007 Phosphonate metabolism protein PhnJ ND438_01975 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND438_01980 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND438_01985 PF06754 Phosphonate metabolism protein PhnG ND438_01995 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND438_01995 PF03477 ATP cone domain ND438_02000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND438_02000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND438_02005 PF06877 Regulator of ribonuclease activity B ND438_02010 PF00583 Acetyltransferase (GNAT) family ND438_02015 PF08264 Anticodon-binding domain of tRNA ND438_02015 PF10458 Valyl tRNA synthetase tRNA binding arm ND438_02015 PF00133 tRNA synthetases class I (I, L, M and V) ND438_02020 PF04364 DNA polymerase III chi subunit, HolC ND438_02025 PF02789 Cytosol aminopeptidase family, N-terminal domain ND438_02025 PF00883 Cytosol aminopeptidase family, catalytic domain ND438_02030 PF03739 Lipopolysaccharide export system permease LptF/LptG ND438_02035 PF03739 Lipopolysaccharide export system permease LptF/LptG ND438_02075 PF04221 RelB antitoxin ND438_02080 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND438_02125 PF00892 EamA-like transporter family ND438_02170 PF01344 Kelch motif ND438_02175 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND438_02180 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND438_02180 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND438_02180 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND438_02195 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND438_02195 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND438_02195 PF09093 Lyase, catalytic ND438_02195 PF09092 Lyase, N terminal ND438_02200 PF00884 Sulfatase ND438_02205 PF00455 DeoR C terminal sensor domain ND438_02205 PF08220 DeoR-like helix-turn-helix domain ND438_02210 PF08013 Tagatose 6 phosphate kinase ND438_02215 PF01380 SIS domain ND438_02220 PF03830 PTS system sorbose subfamily IIB component ND438_02225 PF03609 PTS system sorbose-specific iic component ND438_02230 PF03613 PTS system mannose/fructose/sorbose family IID component ND438_02240 PF01979 Amidohydrolase family ND438_02245 PF04962 KduI/IolB family ND438_02255 PF07470 Glycosyl Hydrolase Family 88 ND438_02260 PF13186 Iron-sulfur cluster-binding domain ND438_02260 PF04055 Radical SAM superfamily ND438_02265 PF00884 Sulfatase ND438_02275 PF01116 Fructose-bisphosphate aldolase class-II ND438_02285 PF10696 Protein of unknown function (DUF2501) ND438_02290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND438_02305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND438_02310 PF00873 AcrB/AcrD/AcrF family ND438_02315 PF00465 Iron-containing alcohol dehydrogenase ND438_02320 PF02733 Dak1 domain ND438_02325 PF02734 DAK2 domain ND438_02330 PF03610 PTS system fructose IIA component ND438_02330 PF05524 PEP-utilising enzyme, N-terminal ND438_02330 PF00391 PEP-utilising enzyme, mobile domain ND438_02330 PF00381 PTS HPr component phosphorylation site ND438_02335 PF00158 Sigma-54 interaction domain ND438_02335 PF02954 Bacterial regulatory protein, Fis family ND438_02335 PF00989 PAS fold ND438_02345 PF07256 Protein of unknown function (DUF1435) ND438_02365 PF08468 Methyltransferase small domain N-terminal ND438_02365 PF05175 Methyltransferase small domain ND438_02370 PF03603 DNA polymerase III psi subunit ND438_02375 PF00583 Acetyltransferase (GNAT) family ND438_02380 PF00009 Elongation factor Tu GTP binding domain ND438_02380 PF03144 Elongation factor Tu domain 2 ND438_02380 PF16658 Class II release factor RF3, C-terminal domain ND438_02385 PF04972 BON domain ND438_02390 PF07043 Protein of unknown function (DUF1328) ND438_02395 PF01734 Patatin-like phospholipase ND438_02400 PF01026 TatD related DNase ND438_02405 PF07670 Nucleoside recognition ND438_02405 PF07662 Na+ dependent nucleoside transporter C-terminus ND438_02405 PF01773 Na+ dependent nucleoside transporter N-terminus ND438_02410 PF01791 DeoC/LacD family aldolase ND438_02415 PF02885 Glycosyl transferase family, helical bundle domain ND438_02415 PF00591 Glycosyl transferase family, a/b domain ND438_02415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND438_02420 PF01676 Metalloenzyme superfamily ND438_02425 PF01048 Phosphorylase superfamily ND438_02430 PF10144 Bacterial virulence factor haemolysin ND438_02435 PF18429 Domain of unknown function (DUF5609) ND438_02440 PF18073 Rubredoxin metal binding domain ND438_02445 PF13521 AAA domain ND438_02445 PF01381 Helix-turn-helix ND438_02450 PF00005 ABC transporter ND438_02450 PF12848 ABC transporter ND438_02465 PF00689 Cation transporting ATPase, C-terminus ND438_02465 PF00690 Cation transporter/ATPase, N-terminus ND438_02475 PF01464 Transglycosylase SLT domain ND438_02475 PF14718 Soluble lytic murein transglycosylase L domain ND438_02480 PF01371 Trp repressor protein ND438_02485 PF01931 Protein of unknown function DUF84 ND438_02490 PF00300 Histidine phosphatase superfamily (branch 1) ND438_02495 PF06445 GyrI-like small molecule binding domain ND438_02495 PF12833 Helix-turn-helix domain ND438_02500 PF05981 CreA protein ND438_02505 PF00072 Response regulator receiver domain ND438_02505 PF00486 Transcriptional regulatory protein, C terminal ND438_02515 PF08254 Threonine leader peptide ND438_02520 PF13840 ACT domain ND438_02520 PF00742 Homoserine dehydrogenase ND438_02520 PF03447 Homoserine dehydrogenase, NAD binding domain ND438_02520 PF00696 Amino acid kinase family ND438_02520 PF01842 ACT domain ND438_02525 PF08544 GHMP kinases C terminal ND438_02525 PF00288 GHMP kinases N terminal domain ND438_02530 PF00291 Pyridoxal-phosphate dependent enzyme ND438_02530 PF14821 Threonine synthase N terminus ND438_02535 PF03883 Peroxide stress protein YaaA ND438_02540 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND438_02545 PF00994 Probable molybdopterin binding domain ND438_02550 PF07690 Major Facilitator Superfamily ND438_02560 PF01184 GPR1/FUN34/yaaH family ND438_02565 PF00012 Hsp70 protein ND438_02570 PF00226 DnaJ domain ND438_02570 PF00684 DnaJ central domain ND438_02570 PF01556 DnaJ C terminal domain ND438_02575 PF06965 Na+/H+ antiporter 1 ND438_02580 PF03466 LysR substrate binding domain ND438_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_02585 PF01649 Ribosomal protein S20 ND438_02590 PF06574 FAD synthetase ND438_02590 PF01687 Riboflavin kinase ND438_02595 PF08264 Anticodon-binding domain of tRNA ND438_02595 PF00133 tRNA synthetases class I (I, L, M and V) ND438_02595 PF06827 Zinc finger found in FPG and IleRS ND438_02600 PF01252 Signal peptidase (SPase) II ND438_02605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND438_02610 PF02401 LytB protein ND438_02615 PF05173 Dihydrodipicolinate reductase, C-terminus ND438_02615 PF01113 Dihydrodipicolinate reductase, N-terminus ND438_02620 PF00117 Glutamine amidotransferase class-I ND438_02620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND438_02625 PF02142 MGS-like domain ND438_02625 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND438_02625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND438_02630 PF01810 LysE type translocator ND438_02635 PF06738 Putative threonine/serine exporter ND438_02640 PF12821 Threonine/Serine exporter, ThrE ND438_02645 PF00186 Dihydrofolate reductase ND438_02655 PF00149 Calcineurin-like phosphoesterase ND438_02660 PF04379 ApaG domain ND438_02665 PF00398 Ribosomal RNA adenine dimethylase ND438_02670 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND438_02675 PF00639 PPIC-type PPIASE domain ND438_02675 PF09312 SurA N-terminal domain ND438_02680 PF03968 OstA-like protein ND438_02680 PF04453 LPS transport system D ND438_02685 PF05099 Tellurite resistance protein TerB ND438_02685 PF00226 DnaJ domain ND438_02690 PF00849 RNA pseudouridylate synthase ND438_02695 PF00271 Helicase conserved C-terminal domain ND438_02695 PF12137 RNA polymerase recycling family C-terminal ND438_02695 PF00176 SNF2 family N-terminal domain ND438_02695 PF18337 RapA N-terminal Tudor like domain ND438_02695 PF18339 RapA N-terminal Tudor like domain 1 ND438_02700 PF00136 DNA polymerase family B ND438_02700 PF03104 DNA polymerase family B, exonuclease domain ND438_02705 PF09335 SNARE associated Golgi protein ND438_02710 PF00005 ABC transporter ND438_02715 PF00528 Binding-protein-dependent transport system inner membrane component ND438_02725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND438_02725 PF12793 Sugar transport-related sRNA regulator N-term ND438_02735 PF07690 Major Facilitator Superfamily ND438_02740 PF00694 Aconitase C-terminal domain ND438_02745 PF00330 Aconitase family (aconitate hydratase) ND438_02750 PF00180 Isocitrate/isopropylmalate dehydrogenase ND438_02755 PF08502 LeuA allosteric (dimerisation) domain ND438_02755 PF00682 HMGL-like ND438_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_02760 PF03466 LysR substrate binding domain ND438_02765 PF00501 AMP-binding enzyme ND438_02770 PF00205 Thiamine pyrophosphate enzyme, central domain ND438_02770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND438_02770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND438_02775 PF10369 Small subunit of acetolactate synthase ND438_02780 PF00356 Bacterial regulatory proteins, lacI family ND438_02780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND438_02785 PF06610 L-alanine exporter ND438_02790 PF02381 MraZ protein, putative antitoxin-like ND438_02795 PF01795 MraW methylase family ND438_02800 PF04999 Cell division protein FtsL ND438_02805 PF03717 Penicillin-binding Protein dimerisation domain ND438_02805 PF00905 Penicillin binding protein transpeptidase domain ND438_02810 PF01225 Mur ligase family, catalytic domain ND438_02810 PF02875 Mur ligase family, glutamate ligase domain ND438_02810 PF08245 Mur ligase middle domain ND438_02815 PF01225 Mur ligase family, catalytic domain ND438_02815 PF08245 Mur ligase middle domain ND438_02815 PF02875 Mur ligase family, glutamate ligase domain ND438_02820 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND438_02820 PF00953 Glycosyl transferase family 4 ND438_02825 PF02875 Mur ligase family, glutamate ligase domain ND438_02825 PF08245 Mur ligase middle domain ND438_02830 PF01098 Cell cycle protein ND438_02835 PF04101 Glycosyltransferase family 28 C-terminal domain ND438_02835 PF03033 Glycosyltransferase family 28 N-terminal domain ND438_02840 PF08245 Mur ligase middle domain ND438_02840 PF01225 Mur ligase family, catalytic domain ND438_02840 PF02875 Mur ligase family, glutamate ligase domain ND438_02845 PF01820 D-ala D-ala ligase N-terminus ND438_02845 PF07478 D-ala D-ala ligase C-terminus ND438_02850 PF03799 Cell division protein FtsQ ND438_02850 PF08478 POTRA domain, FtsQ-type ND438_02855 PF02491 SHS2 domain inserted in FTSA ND438_02860 PF12327 FtsZ family, C-terminal domain ND438_02860 PF00091 Tubulin/FtsZ family, GTPase domain ND438_02865 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND438_02875 PF06558 Secretion monitor precursor protein (SecM) ND438_02880 PF07516 SecA Wing and Scaffold domain ND438_02880 PF02810 SEC-C motif ND438_02880 PF07517 SecA DEAD-like domain ND438_02880 PF01043 SecA preprotein cross-linking domain ND438_02885 PF00293 NUDIX domain ND438_02890 PF03884 DNA gyrase inhibitor YacG ND438_02895 PF07072 Cell division protein ND438_02900 PF01121 Dephospho-CoA kinase ND438_02905 PF00478 IMP dehydrogenase / GMP reductase domain ND438_02910 PF00482 Type II secretion system (T2SS), protein F ND438_02915 PF00437 Type II/IV secretion system protein ND438_02915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND438_02920 PF07963 Prokaryotic N-terminal methylation motif ND438_02925 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND438_02925 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND438_02930 PF01510 N-acetylmuramoyl-L-alanine amidase ND438_02935 PF17113 Regulatory signalling modulator protein AmpE ND438_02940 PF00324 Amino acid permease ND438_02945 PF07729 FCD domain ND438_02945 PF00392 Bacterial regulatory proteins, gntR family ND438_02950 PF17831 Pyruvate dehydrogenase E1 component middle domain ND438_02950 PF00456 Transketolase, thiamine diphosphate binding domain ND438_02955 PF00364 Biotin-requiring enzyme ND438_02955 PF02817 e3 binding domain ND438_02955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND438_02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_02960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND438_02970 PF00330 Aconitase family (aconitate hydratase) ND438_02970 PF06434 Aconitate hydratase 2 N-terminus ND438_02970 PF11791 Aconitate B N-terminal domain ND438_02975 PF06062 Uncharacterised protein family (UPF0231) ND438_02980 PF00892 EamA-like transporter family ND438_02985 PF02675 S-adenosylmethionine decarboxylase ND438_02990 PF17284 Spermidine synthase tetramerisation domain ND438_02995 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND438_03000 PF00394 Multicopper oxidase ND438_03000 PF07731 Multicopper oxidase ND438_03000 PF07732 Multicopper oxidase ND438_03000 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND438_03005 PF00156 Phosphoribosyl transferase domain ND438_03010 PF00484 Carbonic anhydrase ND438_03015 PF00005 ABC transporter ND438_03020 PF01061 ABC-2 type transporter ND438_03025 PF01522 Polysaccharide deacetylase ND438_03030 PF02261 Aspartate decarboxylase ND438_03035 PF02569 Pantoate-beta-alanine ligase ND438_03040 PF02548 Ketopantoate hydroxymethyltransferase ND438_03045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND438_03050 PF12626 Polymerase A arginine-rich C-terminus ND438_03050 PF12627 Probable RNA and SrmB- binding site of polymerase A ND438_03050 PF01743 Poly A polymerase head domain ND438_03055 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND438_03060 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND438_03065 PF03749 Sugar fermentation stimulation protein RE domain ND438_03065 PF17746 SfsA N-terminal OB domain ND438_03070 PF02834 LigT like Phosphoesterase ND438_03075 PF08482 ATP-dependent helicase C-terminal ND438_03075 PF04408 Helicase associated domain (HA2) ND438_03075 PF00270 DEAD/DEAH box helicase ND438_03075 PF00271 Helicase conserved C-terminal domain ND438_03080 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND438_03080 PF00912 Transglycosylase ND438_03080 PF00905 Penicillin binding protein transpeptidase domain ND438_03080 PF14814 Bifunctional transglycosylase second domain ND438_03085 PF00202 Aminotransferase class-III ND438_03090 PF00654 Voltage gated chloride channel ND438_03095 PF01521 Iron-sulphur cluster biosynthesis ND438_03100 PF03458 UPF0126 domain ND438_03105 PF01497 Periplasmic binding protein ND438_03110 PF01048 Phosphorylase superfamily ND438_03115 PF01966 HD domain ND438_03115 PF13286 Phosphohydrolase-associated domain ND438_03120 PF00595 PDZ domain ND438_03125 PF00072 Response regulator receiver domain ND438_03125 PF01627 Hpt domain ND438_03125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND438_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_03125 PF00672 HAMP domain ND438_03125 PF00512 His Kinase A (phospho-acceptor) domain ND438_03130 PF01938 TRAM domain ND438_03130 PF05958 tRNA (Uracil-5-)-methyltransferase ND438_03135 PF13291 ACT domain ND438_03135 PF04607 Region found in RelA / SpoT proteins ND438_03135 PF02824 TGS domain ND438_03140 PF03819 MazG nucleotide pyrophosphohydrolase domain ND438_03145 PF06418 CTP synthase N-terminus ND438_03145 PF00117 Glutamine amidotransferase class-I ND438_03150 PF03952 Enolase, N-terminal domain ND438_03150 PF00113 Enolase, C-terminal TIM barrel domain ND438_03155 PF04055 Radical SAM superfamily ND438_03160 PF01242 6-pyruvoyl tetrahydropterin synthase ND438_03165 PF00667 FAD binding domain ND438_03165 PF00258 Flavodoxin ND438_03165 PF00175 Oxidoreductase NAD-binding domain ND438_03170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND438_03170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND438_03175 PF01507 Phosphoadenosine phosphosulfate reductase family ND438_03190 PF04389 Peptidase family M28 ND438_03195 PF10414 Sirohaem synthase dimerisation region ND438_03195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND438_03195 PF14824 Sirohaem biosynthesis protein central ND438_03200 PF01507 Phosphoadenosine phosphosulfate reductase family ND438_03205 PF00009 Elongation factor Tu GTP binding domain ND438_03215 PF12084 Protein of unknown function (DUF3561) ND438_03220 PF04977 Septum formation initiator ND438_03225 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND438_03230 PF02542 YgbB family ND438_03235 PF01142 tRNA pseudouridine synthase D (TruD) ND438_03240 PF01975 Survival protein SurE ND438_03250 PF01476 LysM domain ND438_03250 PF01551 Peptidase family M23 ND438_03255 PF04542 Sigma-70 region 2 ND438_03255 PF00140 Sigma-70 factor, region 1.2 ND438_03255 PF04539 Sigma-70 region 3 ND438_03255 PF04545 Sigma-70, region 4 ND438_03260 PF01624 MutS domain I ND438_03260 PF05192 MutS domain III ND438_03260 PF00488 MutS domain V ND438_03260 PF05190 MutS family domain IV ND438_03260 PF05188 MutS domain II ND438_03295 PF00550 Phosphopantetheine attachment site ND438_03295 PF00668 Condensation domain ND438_03295 PF13193 AMP-binding enzyme C-terminal domain ND438_03295 PF00501 AMP-binding enzyme ND438_03330 PF09308 LuxQ, periplasmic ND438_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_03330 PF00512 His Kinase A (phospho-acceptor) domain ND438_03330 PF00072 Response regulator receiver domain ND438_03335 PF00196 Bacterial regulatory proteins, luxR family ND438_03335 PF00072 Response regulator receiver domain ND438_03350 PF01464 Transglycosylase SLT domain ND438_03370 PF01514 Secretory protein of YscJ/FliF family ND438_03390 PF12833 Helix-turn-helix domain ND438_03395 PF00263 Bacterial type II and III secretion system protein ND438_03395 PF03958 Bacterial type II/III secretion system short domain ND438_03400 PF07201 HrpJ-like domain ND438_03405 PF00771 FHIPEP family ND438_03415 PF18269 T3SS EscN ATPase C-terminal domain ND438_03415 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND438_03415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND438_03430 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND438_03435 PF00813 FliP family ND438_03440 PF01313 Bacterial export proteins, family 3 ND438_03445 PF01311 Bacterial export proteins, family 1 ND438_03450 PF01312 FlhB HrpN YscU SpaS Family ND438_03455 PF07720 Tetratricopeptide repeat ND438_03480 PF00550 Phosphopantetheine attachment site ND438_03500 PF18416 N-acetylglucosamine binding protein domain 2 ND438_03500 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND438_03505 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND438_03510 PF06750 Bacterial Peptidase A24 N-terminal domain ND438_03510 PF01478 Type IV leader peptidase family ND438_03520 PF05134 Type II secretion system (T2SS), protein L ND438_03520 PF12693 GspL periplasmic domain ND438_03525 PF03934 Type II secretion system (T2SS), protein K ND438_03530 PF07963 Prokaryotic N-terminal methylation motif ND438_03530 PF11612 Type II secretion system (T2SS), protein J ND438_03535 PF07963 Prokaryotic N-terminal methylation motif ND438_03535 PF02501 Type II secretion system (T2SS), protein I ND438_03545 PF07963 Prokaryotic N-terminal methylation motif ND438_03545 PF08334 Type II secretion system (T2SS), protein G ND438_03550 PF00482 Type II secretion system (T2SS), protein F ND438_03555 PF00437 Type II/IV secretion system protein ND438_03560 PF03958 Bacterial type II/III secretion system short domain ND438_03560 PF00263 Bacterial type II and III secretion system protein ND438_03565 PF11356 Type II secretion system protein C ND438_03590 PF05681 Fumarate hydratase (Fumerase) ND438_03590 PF05683 Fumarase C-terminus ND438_03595 PF07690 Major Facilitator Superfamily ND438_03600 PF02464 Competence-damaged protein ND438_03605 PF00154 recA bacterial DNA recombination protein ND438_03610 PF02631 RecX family ND438_03615 PF02272 DHHA1 domain ND438_03615 PF01411 tRNA synthetases class II (A) ND438_03615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND438_03620 PF02599 Global regulator protein family ND438_03645 PF01411 tRNA synthetases class II (A) ND438_03645 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND438_03650 PF13419 Haloacid dehalogenase-like hydrolase ND438_03655 PF09335 SNARE associated Golgi protein ND438_03660 PF04262 Glutamate-cysteine ligase ND438_03665 PF02664 S-Ribosylhomocysteinase (LuxS) ND438_03670 PF00571 CBS domain ND438_03670 PF03471 Transporter associated domain ND438_03670 PF01595 Cyclin M transmembrane N-terminal domain ND438_03675 PF01578 Cytochrome C assembly protein ND438_03680 PF02978 Signal peptide binding domain ND438_03680 PF02881 SRP54-type protein, helical bundle domain ND438_03680 PF00448 SRP54-type protein, GTPase domain ND438_03685 PF00886 Ribosomal protein S16 ND438_03690 PF01782 RimM N-terminal domain ND438_03690 PF05239 PRC-barrel domain ND438_03695 PF01746 tRNA (Guanine-1)-methyltransferase ND438_03700 PF01245 Ribosomal protein L19 ND438_03705 PF04338 Protein of unknown function, DUF481 ND438_03710 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND438_03715 PF00072 Response regulator receiver domain ND438_03715 PF04397 LytTr DNA-binding domain ND438_03720 PF00793 DAHP synthetase I family ND438_03725 PF01817 Chorismate mutase type II ND438_03725 PF02153 Prephenate dehydrogenase ND438_03730 PF01817 Chorismate mutase type II ND438_03730 PF00800 Prephenate dehydratase ND438_03740 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND438_03745 PF13525 Outer membrane lipoprotein ND438_03750 PF00849 RNA pseudouridylate synthase ND438_03750 PF01479 S4 domain ND438_03755 PF02578 Multi-copper polyphenol oxidoreductase laccase ND438_03760 PF07724 AAA domain (Cdc48 subfamily) ND438_03760 PF17871 AAA lid domain ND438_03760 PF02861 Clp amino terminal domain, pathogenicity island component ND438_03760 PF10431 C-terminal, D2-small domain, of ClpB protein ND438_03760 PF00004 ATPase family associated with various cellular activities (AAA) ND438_03795 PF03372 Endonuclease/Exonuclease/phosphatase family ND438_03800 PF01476 LysM domain ND438_03800 PF01464 Transglycosylase SLT domain ND438_03805 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND438_03805 PF00753 Metallo-beta-lactamase superfamily ND438_03810 PF08241 Methyltransferase domain ND438_03815 PF00075 RNase H ND438_03820 PF00929 Exonuclease ND438_03830 PF09317 Domain of unknown function (DUF1974) ND438_03830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND438_03830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND438_03835 PF13580 SIS domain ND438_03840 PF13230 Glutamine amidotransferases class-II ND438_03845 PF03734 L,D-transpeptidase catalytic domain ND438_03850 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND438_03850 PF11973 NQRA C-terminal domain ND438_03855 PF03116 NQR2, RnfD, RnfE family ND438_03860 PF04205 FMN-binding domain ND438_03865 PF02508 Rnf-Nqr subunit, membrane protein ND438_03870 PF02508 Rnf-Nqr subunit, membrane protein ND438_03875 PF00970 Oxidoreductase FAD-binding domain ND438_03875 PF00111 2Fe-2S iron-sulfur cluster binding domain ND438_03875 PF00175 Oxidoreductase NAD-binding domain ND438_03880 PF02424 ApbE family ND438_03885 PF04400 (Na+)-NQR maturation NqrM ND438_03890 PF03009 Glycerophosphoryl diester phosphodiesterase family ND438_03895 PF11799 impB/mucB/samB family C-terminal domain ND438_03895 PF11798 IMS family HHH motif ND438_03895 PF00817 impB/mucB/samB family ND438_03900 PF07687 Peptidase dimerisation domain ND438_03900 PF01546 Peptidase family M20/M25/M40 ND438_03905 PF00156 Phosphoribosyl transferase domain ND438_03910 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND438_03915 PF07417 Sigma factor-binding transcriptional regulator Crl ND438_03920 PF00696 Amino acid kinase family ND438_03920 PF01472 PUA domain ND438_03925 PF00171 Aldehyde dehydrogenase family ND438_03930 PF07238 PilZ domain ND438_03930 PF07317 Flagellar regulator YcgR ND438_03950 PF01497 Periplasmic binding protein ND438_03955 PF00593 TonB dependent receptor ND438_03955 PF07715 TonB-dependent Receptor Plug Domain ND438_03960 PF01202 Shikimate kinase ND438_03980 PF07302 AroM protein ND438_03985 PF06865 Pyrimidine/purine nucleoside phosphorylase ND438_03990 PF04381 Putative exonuclease, RdgC ND438_03995 PF00480 ROK family ND438_04000 PF13476 AAA domain ND438_04005 PF00149 Calcineurin-like phosphoesterase ND438_04005 PF12320 Type 5 capsule protein repressor C-terminal domain ND438_04010 PF00072 Response regulator receiver domain ND438_04010 PF00486 Transcriptional regulatory protein, C terminal ND438_04015 PF00512 His Kinase A (phospho-acceptor) domain ND438_04015 PF00989 PAS fold ND438_04015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_04015 PF11808 Phosphate regulon sensor protein PhoR ND438_04020 PF12849 PBP superfamily domain ND438_04025 PF05525 Branched-chain amino acid transport protein ND438_04030 PF00324 Amino acid permease ND438_04035 PF00128 Alpha amylase, catalytic domain ND438_04035 PF02903 Alpha amylase, N-terminal ig-like domain ND438_04045 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND438_04045 PF00578 AhpC/TSA family ND438_04050 PF04336 Acyl carrier protein phosphodiesterase ND438_04055 PF02547 Queuosine biosynthesis protein ND438_04060 PF01702 Queuine tRNA-ribosyltransferase ND438_04065 PF02699 Preprotein translocase subunit ND438_04070 PF02355 Protein export membrane protein ND438_04070 PF07549 SecD/SecF GG Motif ND438_04070 PF13721 SecD export protein N-terminal TM region ND438_04075 PF07549 SecD/SecF GG Motif ND438_04075 PF02355 Protein export membrane protein ND438_04080 PF03477 ATP cone domain ND438_04085 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND438_04085 PF01872 RibD C-terminal domain ND438_04090 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND438_04095 PF01029 NusB family ND438_04100 PF02769 AIR synthase related protein, C-terminal domain ND438_04100 PF00586 AIR synthase related protein, N-terminal domain ND438_04105 PF04608 Phosphatidylglycerophosphatase A ND438_04110 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND438_04110 PF02779 Transketolase, pyrimidine binding domain ND438_04110 PF02780 Transketolase, C-terminal domain ND438_04115 PF00348 Polyprenyl synthetase ND438_04120 PF02609 Exonuclease VII small subunit ND438_04125 PF02568 Thiamine biosynthesis protein (ThiI) ND438_04125 PF02926 THUMP domain ND438_04130 PF14532 Sigma-54 interaction domain ND438_04130 PF00072 Response regulator receiver domain ND438_04130 PF02954 Bacterial regulatory protein, Fis family ND438_04135 PF00672 HAMP domain ND438_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_04135 PF00512 His Kinase A (phospho-acceptor) domain ND438_04145 PF07690 Major Facilitator Superfamily ND438_04150 PF01965 DJ-1/PfpI family ND438_04155 PF02558 Ketopantoate reductase PanE/ApbA ND438_04155 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND438_04160 PF04461 Protein of unknown function (DUF520) ND438_04165 PF07690 Major Facilitator Superfamily ND438_04170 PF01040 UbiA prenyltransferase family ND438_04175 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND438_04180 PF00510 Cytochrome c oxidase subunit III ND438_04185 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND438_04190 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND438_04190 PF06481 COX Aromatic Rich Motif ND438_04195 PF03502 Nucleoside-specific channel-forming protein, Tsx ND438_04200 PF07690 Major Facilitator Superfamily ND438_04205 PF03923 Uncharacterized lipoprotein ND438_04205 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND438_04210 PF01722 BolA-like protein ND438_04215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND438_04215 PF05698 Bacterial trigger factor protein (TF) C-terminus ND438_04215 PF05697 Bacterial trigger factor protein (TF) ND438_04220 PF00574 Clp protease ND438_04225 PF07724 AAA domain (Cdc48 subfamily) ND438_04225 PF10431 C-terminal, D2-small domain, of ClpB protein ND438_04225 PF06689 ClpX C4-type zinc finger ND438_04230 PF00004 ATPase family associated with various cellular activities (AAA) ND438_04230 PF05362 Lon protease (S16) C-terminal proteolytic domain ND438_04230 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND438_04235 PF00216 Bacterial DNA-binding protein ND438_04240 PF13145 PPIC-type PPIASE domain ND438_04255 PF06508 Queuosine biosynthesis protein QueC ND438_04260 PF12793 Sugar transport-related sRNA regulator N-term ND438_04260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND438_04275 PF01037 Lrp/AsnC ligand binding domain ND438_04275 PF13404 AsnC-type helix-turn-helix domain ND438_04280 PF00664 ABC transporter transmembrane region ND438_04280 PF00005 ABC transporter ND438_04285 PF00664 ABC transporter transmembrane region ND438_04285 PF00005 ABC transporter ND438_04290 PF00543 Nitrogen regulatory protein P-II ND438_04295 PF00909 Ammonium Transporter Family ND438_04305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND438_04315 PF05321 Haemolysin expression modulating protein ND438_04320 PF10757 Biofilm formation regulator YbaJ ND438_04330 PF00444 Ribosomal protein L36 ND438_04335 PF01197 Ribosomal protein L31 ND438_04340 PF00873 AcrB/AcrD/AcrF family ND438_04345 PF00529 HlyD membrane-fusion protein of T1SS ND438_04345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND438_04350 PF08361 MAATS-type transcriptional repressor, C-terminal region ND438_04350 PF00440 Bacterial regulatory proteins, tetR family ND438_04355 PF02635 DsrE/DsrF-like family ND438_04360 PF12795 Mechanosensitive ion channel porin domain ND438_04360 PF00924 Mechanosensitive ion channel ND438_04360 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND438_04365 PF10689 Protein of unknown function (DUF2496) ND438_04375 PF04304 Protein of unknown function (DUF454) ND438_04380 PF00156 Phosphoribosyl transferase domain ND438_04385 PF01970 Tripartite tricarboxylate transporter TctA family ND438_04400 PF00486 Transcriptional regulatory protein, C terminal ND438_04400 PF00072 Response regulator receiver domain ND438_04405 PF00512 His Kinase A (phospho-acceptor) domain ND438_04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_04410 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND438_04410 PF12170 DNA polymerase III tau subunit V interacting with alpha ND438_04410 PF12169 DNA polymerase III subunits gamma and tau domain III ND438_04415 PF02575 YbaB/EbfC DNA-binding family ND438_04420 PF02132 RecR protein ND438_04420 PF13662 Toprim domain ND438_04425 PF00183 Hsp90 protein ND438_04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_04430 PF05191 Adenylate kinase, active site lid ND438_04435 PF00762 Ferrochelatase ND438_04440 PF02706 Chain length determinant protein ND438_04445 PF00294 pfkB family carbohydrate kinase ND438_04450 PF00999 Sodium/hydrogen exchanger family ND438_04450 PF02254 TrkA-N domain ND438_04455 PF02872 5'-nucleotidase, C-terminal domain ND438_04455 PF00149 Calcineurin-like phosphoesterase ND438_04460 PF04073 Aminoacyl-tRNA editing domain ND438_04465 PF01963 TraB family ND438_04470 PF00403 Heavy-metal-associated domain ND438_04475 PF13411 MerR HTH family regulatory protein ND438_04480 PF01957 NfeD-like C-terminal, partner-binding ND438_04485 PF16200 C-terminal region of band_7 ND438_04485 PF01145 SPFH domain / Band 7 family ND438_04490 PF00085 Thioredoxin ND438_04495 PF00106 short chain dehydrogenase ND438_04500 PF13472 GDSL-like Lipase/Acylhydrolase family ND438_04505 PF00005 ABC transporter ND438_04515 PF02222 ATP-grasp domain ND438_04515 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND438_04520 PF00731 AIR carboxylase ND438_04525 PF00149 Calcineurin-like phosphoesterase ND438_04530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND438_04535 PF09190 DALR domain ND438_04535 PF01406 tRNA synthetases class I (C) catalytic domain ND438_04550 PF00419 Fimbrial protein ND438_04555 PF13953 PapC C-terminal domain ND438_04555 PF13954 PapC N-terminal domain ND438_04555 PF00577 Outer membrane usher protein ND438_04560 PF02753 Pili assembly chaperone PapD, C-terminal domain ND438_04560 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_04595 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND438_04595 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND438_04605 PF01022 Bacterial regulatory protein, arsR family ND438_04610 PF02040 Arsenical pump membrane protein ND438_04615 PF03960 ArsC family ND438_04625 PF00501 AMP-binding enzyme ND438_04650 PF01292 Prokaryotic cytochrome b561 ND438_04660 PF00343 Carbohydrate phosphorylase ND438_04670 PF00072 Response regulator receiver domain ND438_04670 PF00486 Transcriptional regulatory protein, C terminal ND438_04680 PF00483 Nucleotidyl transferase ND438_04690 PF07238 PilZ domain ND438_04690 PF00535 Glycosyl transferase family 2 ND438_04690 PF03552 Cellulose synthase ND438_04710 PF16355 Domain of unknown function (DUF4982) ND438_04710 PF00703 Glycosyl hydrolases family 2 ND438_04710 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND438_04710 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND438_04715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND438_04715 PF00672 HAMP domain ND438_04715 PF00072 Response regulator receiver domain ND438_04715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_04715 PF00512 His Kinase A (phospho-acceptor) domain ND438_04715 PF01627 Hpt domain ND438_04720 PF00990 Diguanylate cyclase, GGDEF domain ND438_04720 PF00072 Response regulator receiver domain ND438_04725 PF00440 Bacterial regulatory proteins, tetR family ND438_04755 PF00196 Bacterial regulatory proteins, luxR family ND438_04760 PF00313 'Cold-shock' DNA-binding domain ND438_04765 PF00313 'Cold-shock' DNA-binding domain ND438_04770 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND438_04780 PF05230 MASE2 domain ND438_04780 PF00990 Diguanylate cyclase, GGDEF domain ND438_04785 PF02416 mttA/Hcf106 family ND438_04790 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND438_04790 PF04055 Radical SAM superfamily ND438_04795 PF03099 Biotin/lipoate A/B protein ligase family ND438_04800 PF04359 Protein of unknown function (DUF493) ND438_04805 PF07943 Penicillin-binding protein 5, C-terminal domain ND438_04805 PF00768 D-alanyl-D-alanine carboxypeptidase ND438_04810 PF03330 Lytic transglycolase ND438_04810 PF05036 Sporulation related domain ND438_04815 PF01098 Cell cycle protein ND438_04820 PF03717 Penicillin-binding Protein dimerisation domain ND438_04820 PF00905 Penicillin binding protein transpeptidase domain ND438_04825 PF02590 Predicted SPOUT methyltransferase ND438_04835 PF01467 Cytidylyltransferase-like ND438_04840 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND438_04840 PF06144 DNA polymerase III, delta subunit ND438_04845 PF04390 Lipopolysaccharide-assembly ND438_04850 PF08264 Anticodon-binding domain of tRNA ND438_04850 PF00133 tRNA synthetases class I (I, L, M and V) ND438_04850 PF13603 Leucyl-tRNA synthetase, Domain 2 ND438_04855 PF07295 Zinc-ribbon containing domain ND438_04860 PF00005 ABC transporter ND438_04865 PF00528 Binding-protein-dependent transport system inner membrane component ND438_04870 PF00528 Binding-protein-dependent transport system inner membrane component ND438_04875 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_04880 PF00795 Carbon-nitrogen hydrolase ND438_04885 PF03471 Transporter associated domain ND438_04885 PF00571 CBS domain ND438_04890 PF02130 Uncharacterized protein family UPF0054 ND438_04895 PF02562 PhoH-like protein ND438_04900 PF04055 Radical SAM superfamily ND438_04900 PF01938 TRAM domain ND438_04900 PF00919 Uncharacterized protein family UPF0004 ND438_04905 PF01494 FAD binding domain ND438_04940 PF00733 Asparagine synthase ND438_04940 PF13537 Glutamine amidotransferase domain ND438_04945 PF13344 Haloacid dehalogenase-like hydrolase ND438_04950 PF00480 ROK family ND438_04950 PF01047 MarR family ND438_04955 PF01979 Amidohydrolase family ND438_04960 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND438_04965 PF00367 phosphotransferase system, EIIB ND438_04965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND438_04965 PF02378 Phosphotransferase system, EIIC ND438_04970 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND438_04970 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND438_04975 PF03573 outer membrane porin, OprD family ND438_04980 PF13982 YbfN-like lipoprotein ND438_04985 PF00728 Glycosyl hydrolase family 20, catalytic domain ND438_04985 PF02838 Glycosyl hydrolase family 20, domain 2 ND438_04985 PF03173 Putative carbohydrate binding domain ND438_04985 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND438_04990 PF01475 Ferric uptake regulator family ND438_04995 PF00258 Flavodoxin ND438_05000 PF02203 Tar ligand binding domain homologue ND438_05000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND438_05000 PF00672 HAMP domain ND438_05005 PF01402 Ribbon-helix-helix protein, copG family ND438_05010 PF12697 Alpha/beta hydrolase family ND438_05015 PF03925 SeqA protein C-terminal domain ND438_05015 PF17206 SeqA protein N-terminal domain ND438_05020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND438_05020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND438_05020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND438_05020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND438_05030 PF00072 Response regulator receiver domain ND438_05030 PF00486 Transcriptional regulatory protein, C terminal ND438_05035 PF13493 Domain of unknown function (DUF4118) ND438_05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_05035 PF00512 His Kinase A (phospho-acceptor) domain ND438_05035 PF02702 Osmosensitive K+ channel His kinase sensor domain ND438_05035 PF13492 GAF domain ND438_05040 PF02669 K+-transporting ATPase, c chain ND438_05050 PF03814 Potassium-transporting ATPase A subunit ND438_05055 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND438_05060 PF10725 Protein of unknown function (DUF2517) ND438_05065 PF08349 Protein of unknown function (DUF1722) ND438_05070 PF00875 DNA photolyase ND438_05070 PF03441 FAD binding domain of DNA photolyase ND438_05075 PF02112 cAMP phosphodiesterases class-II ND438_05080 PF01784 NIF3 (NGG1p interacting factor 3) ND438_05085 PF02682 Carboxyltransferase domain, subdomain C and D ND438_05090 PF02626 Carboxyltransferase domain, subdomain A and B ND438_05095 PF03746 LamB/YcsF family ND438_05110 PF01470 Pyroglutamyl peptidase ND438_05120 PF00285 Citrate synthase, C-terminal domain ND438_05125 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND438_05130 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND438_05135 PF00890 FAD binding domain ND438_05135 PF02910 Fumarate reductase flavoprotein C-term ND438_05140 PF13085 2Fe-2S iron-sulfur cluster binding domain ND438_05145 PF00676 Dehydrogenase E1 component ND438_05145 PF16078 2-oxoglutarate dehydrogenase N-terminus ND438_05145 PF16870 2-oxoglutarate dehydrogenase C-terminal ND438_05145 PF02779 Transketolase, pyrimidine binding domain ND438_05150 PF00364 Biotin-requiring enzyme ND438_05150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND438_05150 PF02817 e3 binding domain ND438_05155 PF08442 ATP-grasp domain ND438_05155 PF00549 CoA-ligase ND438_05160 PF02629 CoA binding domain ND438_05160 PF00549 CoA-ligase ND438_05165 PF02872 5'-nucleotidase, C-terminal domain ND438_05165 PF00149 Calcineurin-like phosphoesterase ND438_05170 PF01654 Cytochrome bd terminal oxidase subunit I ND438_05175 PF02322 Cytochrome bd terminal oxidase subunit II ND438_05180 PF08173 Membrane bound YbgT-like protein ND438_05185 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND438_05190 PF03061 Thioesterase superfamily ND438_05195 PF01618 MotA/TolQ/ExbB proton channel family ND438_05200 PF02472 Biopolymer transport protein ExbD/TolR ND438_05205 PF06519 TolA C-terminal ND438_05205 PF06519 TolA C-terminal ND438_05210 PF04052 TolB amino-terminal domain ND438_05210 PF07676 WD40-like Beta Propeller Repeat ND438_05215 PF00691 OmpA family ND438_05220 PF16331 TolA binding protein trimerisation ND438_05220 PF13174 Tetratricopeptide repeat ND438_05250 PF02445 Quinolinate synthetase A protein ND438_05255 PF04973 Nicotinamide mononucleotide transporter ND438_05260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_05260 PF00512 His Kinase A (phospho-acceptor) domain ND438_05260 PF00072 Response regulator receiver domain ND438_05260 PF00989 PAS fold ND438_05260 PF01627 Hpt domain ND438_05260 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_05265 PF00072 Response regulator receiver domain ND438_05265 PF00196 Bacterial regulatory proteins, luxR family ND438_05270 PF00793 DAHP synthetase I family ND438_05275 PF00300 Histidine phosphatase superfamily (branch 1) ND438_05285 PF01263 Aldose 1-epimerase ND438_05290 PF10509 Galactokinase galactose-binding signature ND438_05290 PF08544 GHMP kinases C terminal ND438_05290 PF00288 GHMP kinases N terminal domain ND438_05295 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND438_05295 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND438_05300 PF16363 GDP-mannose 4,6 dehydratase ND438_05315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_05315 PF03459 TOBE domain ND438_05320 PF10766 Multidrug efflux pump-associated protein AcrZ ND438_05330 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05335 PF00005 ABC transporter ND438_05335 PF03459 TOBE domain ND438_05345 PF10282 Lactonase, 7-bladed beta-propeller ND438_05350 PF00202 Aminotransferase class-III ND438_05355 PF06968 Biotin and Thiamin Synthesis associated domain ND438_05355 PF04055 Radical SAM superfamily ND438_05360 PF00155 Aminotransferase class I and II ND438_05365 PF08241 Methyltransferase domain ND438_05375 PF00005 ABC transporter ND438_05380 PF17757 UvrB interaction domain ND438_05380 PF12344 Ultra-violet resistance protein B ND438_05380 PF02151 UvrB/uvrC motif ND438_05380 PF04851 Type III restriction enzyme, res subunit ND438_05380 PF00271 Helicase conserved C-terminal domain ND438_05385 PF09905 DNA-binding protein VF530 ND438_05400 PF01032 FecCD transport family ND438_05405 PF00005 ABC transporter ND438_05410 PF01933 Uncharacterised protein family UPF0052 ND438_05415 PF06463 Molybdenum Cofactor Synthesis C ND438_05415 PF04055 Radical SAM superfamily ND438_05420 PF01967 MoaC family ND438_05425 PF02597 ThiS family ND438_05430 PF02391 MoaE protein ND438_05435 PF01027 Inhibitor of apoptosis-promoting Bax1 ND438_05450 PF00005 ABC transporter ND438_05455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND438_05460 PF00440 Bacterial regulatory proteins, tetR family ND438_05460 PF09209 Tetracyclin repressor-like, C-terminal domain ND438_05465 PF00270 DEAD/DEAH box helicase ND438_05465 PF00271 Helicase conserved C-terminal domain ND438_05470 PF01207 Dihydrouridine synthase (Dus) ND438_05480 PF00768 D-alanyl-D-alanine carboxypeptidase ND438_05485 PF01565 FAD binding domain ND438_05485 PF09330 D-lactate dehydrogenase, membrane binding ND438_05490 PF01928 CYTH domain ND438_05495 PF01844 HNH endonuclease ND438_05505 PF04226 Transglycosylase associated protein ND438_05510 PF00005 ABC transporter ND438_05520 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05525 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05530 PF07308 Protein of unknown function (DUF1456) ND438_05535 PF00581 Rhodanese-like domain ND438_05540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND438_05545 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05550 PF00005 ABC transporter ND438_05555 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05560 PF13520 Amino acid permease ND438_05565 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND438_05565 PF01276 Orn/Lys/Arg decarboxylase, major domain ND438_05565 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND438_05575 PF00892 EamA-like transporter family ND438_05580 PF00267 Gram-negative porin ND438_05585 PF13307 Helicase C-terminal domain ND438_05585 PF06733 DEAD_2 ND438_05590 PF02885 Glycosyl transferase family, helical bundle domain ND438_05595 PF05971 RNA methyltransferase ND438_05600 PF00005 ABC transporter ND438_05605 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05610 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_05615 PF00210 Ferritin-like domain ND438_05620 PF13649 Methyltransferase domain ND438_05625 PF00892 EamA-like transporter family ND438_05630 PF13505 Outer membrane protein beta-barrel domain ND438_05635 PF00571 CBS domain ND438_05635 PF01769 Divalent cation transporter ND438_05635 PF03448 MgtE intracellular N domain ND438_05640 PF01545 Cation efflux family ND438_05640 PF16916 Dimerisation domain of Zinc Transporter ND438_05645 PF00005 ABC transporter ND438_05645 PF12848 ABC transporter ND438_05650 PF00899 ThiF family ND438_05655 PF00994 Probable molybdopterin binding domain ND438_05655 PF03454 MoeA C-terminal region (domain IV) ND438_05655 PF03453 MoeA N-terminal region (domain I and II) ND438_05665 PF00756 Putative esterase ND438_05670 PF08240 Alcohol dehydrogenase GroES-like domain ND438_05670 PF00107 Zinc-binding dehydrogenase ND438_05675 PF03466 LysR substrate binding domain ND438_05675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_05680 PF06779 Uncharacterised MFS-type transporter YbfB ND438_05685 PF01227 GTP cyclohydrolase I ND438_05690 PF04235 Protein of unknown function (DUF418) ND438_05695 PF00356 Bacterial regulatory proteins, lacI family ND438_05700 PF13407 Periplasmic binding protein domain ND438_05705 PF00005 ABC transporter ND438_05710 PF02653 Branched-chain amino acid transport system / permease component ND438_05715 PF02698 DUF218 domain ND438_05720 PF03949 Malic enzyme, NAD binding domain ND438_05720 PF00390 Malic enzyme, N-terminal domain ND438_05730 PF03466 LysR substrate binding domain ND438_05730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_05735 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND438_05735 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND438_05740 PF04172 LrgB-like family ND438_05745 PF03788 LrgA family ND438_05755 PF09334 tRNA synthetases class I (M) ND438_05755 PF01588 Putative tRNA binding domain ND438_05760 PF10609 NUBPL iron-transfer P-loop NTPase ND438_05765 PF00485 Phosphoribulokinase / Uridine kinase family ND438_05770 PF00692 dUTPase ND438_05775 PF05170 AsmA family ND438_05780 PF03606 C4-dicarboxylate anaerobic carrier ND438_05785 PF00571 CBS domain ND438_05785 PF03471 Transporter associated domain ND438_05785 PF03741 Integral membrane protein TerC family ND438_05790 PF00483 Nucleotidyl transferase ND438_05795 PF00483 Nucleotidyl transferase ND438_05800 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND438_05800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND438_05810 PF01502 Phosphoribosyl-AMP cyclohydrolase ND438_05810 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND438_05815 PF00977 Histidine biosynthesis protein ND438_05820 PF00977 Histidine biosynthesis protein ND438_05825 PF00117 Glutamine amidotransferase class-I ND438_05830 PF00475 Imidazoleglycerol-phosphate dehydratase ND438_05835 PF00155 Aminotransferase class I and II ND438_05840 PF00815 Histidinol dehydrogenase ND438_05845 PF01634 ATP phosphoribosyltransferase ND438_05845 PF08029 HisG, C-terminal domain ND438_05855 PF01370 NAD dependent epimerase/dehydratase family ND438_05860 PF13417 Glutathione S-transferase, N-terminal domain ND438_05860 PF00043 Glutathione S-transferase, C-terminal domain ND438_05875 PF01053 Cys/Met metabolism PLP-dependent enzyme ND438_05880 PF00291 Pyridoxal-phosphate dependent enzyme ND438_05880 PF00571 CBS domain ND438_05885 PF07943 Penicillin-binding protein 5, C-terminal domain ND438_05885 PF00768 D-alanyl-D-alanine carboxypeptidase ND438_05890 PF03315 Serine dehydratase beta chain ND438_05890 PF03313 Serine dehydratase alpha chain ND438_05900 PF00455 DeoR C terminal sensor domain ND438_05900 PF08220 DeoR-like helix-turn-helix domain ND438_05905 PF01791 DeoC/LacD family aldolase ND438_05910 PF01569 PAP2 superfamily ND438_05920 PF06826 Predicted Permease Membrane Region ND438_05920 PF02080 TrkA-C domain ND438_05925 PF00462 Glutaredoxin ND438_05930 PF07214 Protein of unknown function (DUF1418) ND438_05935 PF10722 Putative bacterial sensory transduction regulator ND438_05940 PF13416 Bacterial extracellular solute-binding protein ND438_05945 PF00005 ABC transporter ND438_05945 PF08402 TOBE domain ND438_05950 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05955 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05960 PF10767 Protein of unknown function (DUF2593) ND438_05965 PF05958 tRNA (Uracil-5-)-methyltransferase ND438_05970 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_05975 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05980 PF00528 Binding-protein-dependent transport system inner membrane component ND438_05985 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_05990 PF00005 ABC transporter ND438_05995 PF12883 Protein of unknown function (DUF3828) ND438_06000 PF01906 Putative heavy-metal-binding ND438_06005 PF01370 NAD dependent epimerase/dehydratase family ND438_06010 PF13460 NAD(P)H-binding ND438_06010 PF11066 Protein of unknown function (DUF2867) ND438_06015 PF01212 Beta-eliminating lyase ND438_06020 PF00111 2Fe-2S iron-sulfur cluster binding domain ND438_06020 PF00175 Oxidoreductase NAD-binding domain ND438_06020 PF00970 Oxidoreductase FAD-binding domain ND438_06025 PF03063 Prismane/CO dehydrogenase family ND438_06030 PF03956 Lysine exporter LysO ND438_06035 PF11398 Protein of unknown function (DUF2813) ND438_06040 PF04393 Protein of unknown function (DUF535) ND438_06045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND438_06050 PF00005 ABC transporter ND438_06050 PF02687 FtsX-like permease family ND438_06050 PF12704 MacB-like periplasmic core domain ND438_06055 PF00313 'Cold-shock' DNA-binding domain ND438_06060 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND438_06065 PF00004 ATPase family associated with various cellular activities (AAA) ND438_06065 PF07724 AAA domain (Cdc48 subfamily) ND438_06065 PF17871 AAA lid domain ND438_06065 PF02861 Clp amino terminal domain, pathogenicity island component ND438_06065 PF10431 C-terminal, D2-small domain, of ClpB protein ND438_06070 PF01176 Translation initiation factor 1A / IF-1 ND438_06075 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND438_06080 PF00005 ABC transporter ND438_06080 PF00664 ABC transporter transmembrane region ND438_06085 PF00664 ABC transporter transmembrane region ND438_06085 PF00005 ABC transporter ND438_06090 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_06095 PF01037 Lrp/AsnC ligand binding domain ND438_06100 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND438_06100 PF17854 FtsK alpha domain ND438_06100 PF09397 Ftsk gamma domain ND438_06100 PF01580 FtsK/SpoIIIE family ND438_06105 PF03548 Outer membrane lipoprotein carrier protein LolA ND438_06110 PF00004 ATPase family associated with various cellular activities (AAA) ND438_06110 PF16193 AAA C-terminal domain ND438_06110 PF12002 MgsA AAA+ ATPase C terminal ND438_06115 PF02403 Seryl-tRNA synthetase N-terminal domain ND438_06115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND438_06120 PF07690 Major Facilitator Superfamily ND438_06125 PF04055 Radical SAM superfamily ND438_06130 PF01228 Glycine radical ND438_06130 PF02901 Pyruvate formate lyase-like ND438_06135 PF01226 Formate/nitrite transporter ND438_06140 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND438_06140 PF18381 YcaO cyclodehydratase C-terminal domain ND438_06145 PF00710 Asparaginase, N-terminal ND438_06145 PF17763 Glutaminase/Asparaginase C-terminal domain ND438_06150 PF00266 Aminotransferase class-V ND438_06155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND438_06160 PF02224 Cytidylate kinase ND438_06165 PF00575 S1 RNA binding domain ND438_06170 PF00216 Bacterial DNA-binding protein ND438_06175 PF03772 Competence protein ND438_06175 PF00753 Metallo-beta-lactamase superfamily ND438_06180 PF00005 ABC transporter ND438_06180 PF00664 ABC transporter transmembrane region ND438_06185 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND438_06190 PF07063 Domain of unknown function (DUF1338) ND438_06195 PF00313 'Cold-shock' DNA-binding domain ND438_06200 PF00313 'Cold-shock' DNA-binding domain ND438_06205 PF03966 Trm112p-like protein ND438_06210 PF02348 Cytidylyltransferase ND438_06215 PF01636 Phosphotransferase enzyme family ND438_06220 PF02698 DUF218 domain ND438_06225 PF13847 Methyltransferase domain ND438_06230 PF17192 MukF middle domain ND438_06230 PF03882 MukF winged-helix domain ND438_06230 PF17193 MukF C-terminal domain ND438_06235 PF04288 MukE-like family ND438_06240 PF04310 MukB N-terminal ND438_06240 PF16330 MukB hinge domain ND438_06245 PF01471 Putative peptidoglycan binding domain ND438_06245 PF03734 L,D-transpeptidase catalytic domain ND438_06250 PF05951 Bacterial protein of unknown function (DUF882) ND438_06255 PF00753 Metallo-beta-lactamase superfamily ND438_06260 PF00155 Aminotransferase class I and II ND438_06265 PF00267 Gram-negative porin ND438_06270 PF00152 tRNA synthetases class II (D, K and N) ND438_06270 PF01336 OB-fold nucleic acid binding domain ND438_06275 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND438_06275 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND438_06280 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND438_06280 PF01433 Peptidase family M1 domain ND438_06280 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND438_06285 PF01180 Dihydroorotate dehydrogenase ND438_06290 PF07126 Cell-division protein ZapC ND438_06295 PF00111 2Fe-2S iron-sulfur cluster binding domain ND438_06295 PF03473 MOSC domain ND438_06295 PF03476 MOSC N-terminal beta barrel domain ND438_06300 PF01170 Putative RNA methylase family UPF0020 ND438_06300 PF10672 S-adenosylmethionine-dependent methyltransferase ND438_06300 PF02926 THUMP domain ND438_06305 PF16326 ABC transporter C-terminal domain ND438_06305 PF00005 ABC transporter ND438_06305 PF12848 ABC transporter ND438_06310 PF04403 Paraquat-inducible protein A ND438_06315 PF02470 MlaD protein ND438_06320 PF03886 ABC-type transport auxiliary lipoprotein component ND438_06325 PF04957 Ribosome modulation factor ND438_06330 PF07977 FabA-like domain ND438_06335 PF13654 AAA domain ND438_06335 PF05362 Lon protease (S16) C-terminal proteolytic domain ND438_06340 PF06303 MatP N-terminal domain ND438_06340 PF17414 MatP C-terminal ribbon-helix-helix domain ND438_06345 PF00691 OmpA family ND438_06345 PF01389 OmpA-like transmembrane domain ND438_06350 PF03846 Cell division inhibitor SulA ND438_06355 PF04994 TfoX C-terminal domain ND438_06355 PF04993 TfoX N-terminal domain ND438_06360 PF12805 FUSC-like inner membrane protein yccS ND438_06365 PF03733 Inner membrane component domain ND438_06370 PF13361 UvrD-like helicase C-terminal domain ND438_06370 PF12462 DNA helicase IV / RNA helicase N terminal ND438_06370 PF00580 UvrD/REP helicase N-terminal domain ND438_06375 PF02142 MGS-like domain ND438_06380 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND438_06385 PF13380 CoA binding domain ND438_06390 PF08755 Hemimethylated DNA-binding protein YccV like ND438_06395 PF10672 S-adenosylmethionine-dependent methyltransferase ND438_06395 PF17785 PUA-like domain ND438_06400 PF00708 Acylphosphatase ND438_06405 PF04358 DsrC like protein ND438_06415 PF00484 Carbonic anhydrase ND438_06420 PF03471 Transporter associated domain ND438_06420 PF00999 Sodium/hydrogen exchanger family ND438_06420 PF02080 TrkA-C domain ND438_06430 PF01757 Acyltransferase family ND438_06435 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND438_06440 PF00535 Glycosyl transferase family 2 ND438_06450 PF01797 Transposase IS200 like ND438_06455 PF07282 Putative transposase DNA-binding domain ND438_06455 PF01385 Probable transposase ND438_06455 PF12323 Helix-turn-helix domain ND438_06460 PF00854 POT family ND438_06470 PF03279 Bacterial lipid A biosynthesis acyltransferase ND438_06475 PF00581 Rhodanese-like domain ND438_06475 PF12368 Rhodanase C-terminal ND438_06475 PF17773 UPF0176 acylphosphatase like domain ND438_06480 PF01594 AI-2E family transporter ND438_06485 PF00196 Bacterial regulatory proteins, luxR family ND438_06490 PF01266 FAD dependent oxidoreductase ND438_06495 PF13991 BssS protein family ND438_06500 PF06183 DinI-like family ND438_06505 PF01979 Amidohydrolase family ND438_06510 PF03992 Antibiotic biosynthesis monooxygenase ND438_06520 PF12111 Polyribonucleotide phosphorylase C terminal ND438_06520 PF10150 Ribonuclease E/G family ND438_06520 PF00575 S1 RNA binding domain ND438_06525 PF00849 RNA pseudouridylate synthase ND438_06525 PF01479 S4 domain ND438_06530 PF02545 Maf-like protein ND438_06535 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND438_06540 PF01783 Ribosomal L32p protein family ND438_06545 PF02504 Fatty acid synthesis protein ND438_06550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND438_06550 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND438_06555 PF00698 Acyl transferase domain ND438_06565 PF00550 Phosphopantetheine attachment site ND438_06570 PF00109 Beta-ketoacyl synthase, N-terminal domain ND438_06570 PF02801 Beta-ketoacyl synthase, C-terminal domain ND438_06575 PF01063 Amino-transferase class IV ND438_06580 PF02618 YceG-like family ND438_06585 PF02223 Thymidylate kinase ND438_06590 PF09115 DNA polymerase III, delta subunit, C terminal ND438_06595 PF01026 TatD related DNase ND438_06600 PF02378 Phosphotransferase system, EIIC ND438_06600 PF00367 phosphotransferase system, EIIB ND438_06605 PF01230 HIT domain ND438_06610 PF07233 Protein of unknown function (DUF1425) ND438_06615 PF13036 Peptidoglycan-synthase activator LpoB ND438_06615 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND438_06620 PF01636 Phosphotransferase enzyme family ND438_06625 PF00933 Glycosyl hydrolase family 3 N terminal domain ND438_06630 PF05728 Uncharacterised protein family (UPF0227) ND438_06635 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_06640 PF05433 Glycine zipper 2TM domain ND438_06645 PF02559 CarD-like/TRCF domain ND438_06645 PF00270 DEAD/DEAH box helicase ND438_06645 PF00271 Helicase conserved C-terminal domain ND438_06645 PF03461 TRCF domain ND438_06645 PF17757 UvrB interaction domain ND438_06650 PF02687 FtsX-like permease family ND438_06650 PF12704 MacB-like periplasmic core domain ND438_06655 PF00005 ABC transporter ND438_06660 PF12704 MacB-like periplasmic core domain ND438_06660 PF02687 FtsX-like permease family ND438_06665 PF00480 ROK family ND438_06670 PF02146 Sir2 family ND438_06675 PF07687 Peptidase dimerisation domain ND438_06675 PF01546 Peptidase family M20/M25/M40 ND438_06680 PF08007 Cupin superfamily protein ND438_06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_06685 PF08918 PhoQ Sensor ND438_06690 PF00072 Response regulator receiver domain ND438_06690 PF00486 Transcriptional regulatory protein, C terminal ND438_06700 PF08328 Adenylosuccinate lyase C-terminal ND438_06700 PF00206 Lyase ND438_06705 PF04356 Protein of unknown function (DUF489) ND438_06715 PF00293 NUDIX domain ND438_06720 PF00849 RNA pseudouridylate synthase ND438_06725 PF00180 Isocitrate/isopropylmalate dehydrogenase ND438_06730 PF00196 Bacterial regulatory proteins, luxR family ND438_06730 PF03472 Autoinducer binding domain ND438_06735 PF00765 Autoinducer synthase ND438_06740 PF00232 Glycosyl hydrolase family 1 ND438_06745 PF01432 Peptidase family M3 ND438_06750 PF02203 Tar ligand binding domain homologue ND438_06750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND438_06750 PF00672 HAMP domain ND438_06770 PF01797 Transposase IS200 like ND438_06775 PF07282 Putative transposase DNA-binding domain ND438_06775 PF01385 Probable transposase ND438_06775 PF12323 Helix-turn-helix domain ND438_06785 PF00072 Response regulator receiver domain ND438_06790 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND438_06790 PF17203 Single cache domain 3 ND438_06790 PF00989 PAS fold ND438_06790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_06795 PF00939 Sodium:sulfate symporter transmembrane region ND438_06800 PF00413 Matrixin ND438_06800 PF08548 Peptidase M10 serralysin C terminal ND438_06800 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND438_06805 PF02974 Protease inhibitor Inh ND438_06810 PF00664 ABC transporter transmembrane region ND438_06810 PF00005 ABC transporter ND438_06815 PF00529 HlyD membrane-fusion protein of T1SS ND438_06820 PF02321 Outer membrane efflux protein ND438_06835 PF02311 AraC-like ligand binding domain ND438_06835 PF12833 Helix-turn-helix domain ND438_06840 PF02562 PhoH-like protein ND438_06845 PF01699 Sodium/calcium exchanger protein ND438_06850 PF04954 Siderophore-interacting protein ND438_06850 PF08021 Siderophore-interacting FAD-binding domain ND438_06855 PF00672 HAMP domain ND438_06855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_06855 PF07730 Histidine kinase ND438_06855 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND438_06865 PF02322 Cytochrome bd terminal oxidase subunit II ND438_06870 PF01654 Cytochrome bd terminal oxidase subunit I ND438_06875 PF00155 Aminotransferase class I and II ND438_06875 PF00392 Bacterial regulatory proteins, gntR family ND438_06880 PF00202 Aminotransferase class-III ND438_06885 PF04958 Arginine N-succinyltransferase beta subunit ND438_06890 PF00171 Aldehyde dehydrogenase family ND438_06895 PF04996 Succinylarginine dihydrolase ND438_06905 PF00267 Gram-negative porin ND438_06915 PF01979 Amidohydrolase family ND438_06920 PF00392 Bacterial regulatory proteins, gntR family ND438_06920 PF07702 UTRA domain ND438_06925 PF01979 Amidohydrolase family ND438_06930 PF05962 HutD ND438_06935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_06935 PF03466 LysR substrate binding domain ND438_06945 PF03824 High-affinity nickel-transport protein ND438_06950 PF00708 Acylphosphatase ND438_06950 PF17788 HypF Kae1-like domain ND438_06950 PF01300 Telomere recombination ND438_06950 PF07503 HypF finger ND438_06955 PF01568 Molydopterin dinucleotide binding domain ND438_06955 PF00384 Molybdopterin oxidoreductase ND438_06955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND438_06960 PF13247 4Fe-4S dicluster domain ND438_06960 PF12800 4Fe-4S binding domain ND438_06965 PF01750 Hydrogenase maturation protease ND438_06970 PF07450 Formate hydrogenlyase maturation protein HycH ND438_06975 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND438_06980 PF12838 4Fe-4S dicluster domain ND438_06985 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND438_06985 PF00374 Nickel-dependent hydrogenase ND438_06985 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND438_06990 PF00146 NADH dehydrogenase ND438_06995 PF00361 Proton-conducting membrane transporter ND438_07000 PF13247 4Fe-4S dicluster domain ND438_07005 PF11046 Transcriptional repressor of hyc and hyp operons ND438_07010 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND438_07015 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND438_07020 PF01455 HupF/HypC family ND438_07025 PF01924 Hydrogenase formation hypA family ND438_07030 PF02769 AIR synthase related protein, C-terminal domain ND438_07030 PF00586 AIR synthase related protein, N-terminal domain ND438_07035 PF00158 Sigma-54 interaction domain ND438_07035 PF01590 GAF domain ND438_07035 PF02954 Bacterial regulatory protein, Fis family ND438_07045 PF13954 PapC N-terminal domain ND438_07045 PF00577 Outer membrane usher protein ND438_07050 PF02753 Pili assembly chaperone PapD, C-terminal domain ND438_07050 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_07065 PF12833 Helix-turn-helix domain ND438_07070 PF06071 Protein of unknown function (DUF933) ND438_07070 PF01926 50S ribosome-binding GTPase ND438_07080 PF01195 Peptidyl-tRNA hydrolase ND438_07085 PF10762 Protein of unknown function (DUF2583) ND438_07090 PF14572 Phosphoribosyl synthetase-associated domain ND438_07090 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND438_07095 PF08544 GHMP kinases C terminal ND438_07095 PF00288 GHMP kinases N terminal domain ND438_07100 PF03550 Outer membrane lipoprotein LolB ND438_07105 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND438_07105 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND438_07105 PF01488 Shikimate / quinate 5-dehydrogenase ND438_07110 PF03462 PCRF domain ND438_07110 PF00472 RF-1 domain ND438_07115 PF13847 Methyltransferase domain ND438_07115 PF17827 PrmC N-terminal domain ND438_07120 PF04247 Invasion gene expression up-regulator, SirB ND438_07125 PF13369 Transglutaminase-like superfamily ND438_07130 PF00793 DAHP synthetase I family ND438_07135 PF01740 STAS domain ND438_07135 PF00916 Sulfate permease family ND438_07140 PF00990 Diguanylate cyclase, GGDEF domain ND438_07150 PF03009 Glycerophosphoryl diester phosphodiesterase family ND438_07160 PF00854 POT family ND438_07165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND438_07170 PF02811 PHP domain ND438_07175 PF02613 Nitrate reductase delta subunit ND438_07180 PF07273 Protein of unknown function (DUF1439) ND438_07190 PF07690 Major Facilitator Superfamily ND438_07195 PF13302 Acetyltransferase (GNAT) domain ND438_07200 PF04337 Protein of unknown function, DUF480 ND438_07205 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND438_07210 PF03023 Lipid II flippase MurJ ND438_07215 PF08479 POTRA domain, ShlB-type ND438_07215 PF17287 POTRA domain ND438_07215 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND438_07220 PF05860 haemagglutination activity domain ND438_07220 PF13332 Hemagglutinin repeat ND438_07230 PF05746 DALR anticodon binding domain ND438_07230 PF00750 tRNA synthetases class I (R) ND438_07230 PF03485 Arginyl tRNA synthetase N terminal domain ND438_07235 PF06185 YecM protein ND438_07240 PF03932 CutC family ND438_07245 PF08003 Protein of unknown function (DUF1698) ND438_07250 PF13649 Methyltransferase domain ND438_07255 PF01124 MAPEG family ND438_07260 PF01904 Protein of unknown function DUF72 ND438_07270 PF02938 GAD domain ND438_07270 PF01336 OB-fold nucleic acid binding domain ND438_07270 PF00152 tRNA synthetases class II (D, K and N) ND438_07275 PF00293 NUDIX domain ND438_07280 PF01709 Transcriptional regulator ND438_07285 PF02075 Crossover junction endodeoxyribonuclease RuvC ND438_07290 PF07499 RuvA, C-terminal domain ND438_07290 PF01330 RuvA N terminal domain ND438_07295 PF05491 RuvB C-terminal winged helix domain ND438_07295 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND438_07295 PF17864 RuvB AAA lid domain ND438_07300 PF00854 POT family ND438_07305 PF00950 ABC 3 transport family ND438_07310 PF00005 ABC transporter ND438_07315 PF01297 Zinc-uptake complex component A periplasmic ND438_07320 PF01476 LysM domain ND438_07320 PF08525 Opacity-associated protein A N-terminal motif ND438_07320 PF01551 Peptidase family M23 ND438_07325 PF03279 Bacterial lipid A biosynthesis acyltransferase ND438_07330 PF00224 Pyruvate kinase, barrel domain ND438_07330 PF02887 Pyruvate kinase, alpha/beta domain ND438_07335 PF01380 SIS domain ND438_07335 PF01418 Helix-turn-helix domain, rpiR family ND438_07340 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND438_07340 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND438_07345 PF01081 KDPG and KHG aldolase ND438_07350 PF00893 Small Multidrug Resistance protein ND438_07355 PF00893 Small Multidrug Resistance protein ND438_07360 PF01042 Endoribonuclease L-PSP ND438_07365 PF13307 Helicase C-terminal domain ND438_07365 PF04851 Type III restriction enzyme, res subunit ND438_07370 PF00814 Glycoprotease family ND438_07375 PF03843 Outer membrane lipoprotein Slp family ND438_07380 PF13193 AMP-binding enzyme C-terminal domain ND438_07380 PF00501 AMP-binding enzyme ND438_07385 PF00570 HRDC domain ND438_07385 PF01612 3'-5' exonuclease ND438_07390 PF03776 Septum formation topological specificity factor MinE ND438_07395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND438_07400 PF03775 Septum formation inhibitor MinC, C-terminal domain ND438_07400 PF05209 Septum formation inhibitor MinC, N-terminal domain ND438_07405 PF05166 YcgL domain ND438_07410 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND438_07415 PF03692 Putative zinc- or iron-chelating domain ND438_07430 PF02600 Disulfide bond formation protein DsbB ND438_07435 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND438_07440 PF00392 Bacterial regulatory proteins, gntR family ND438_07440 PF07840 FadR C-terminal domain ND438_07445 PF04293 SpoVR like protein ND438_07450 PF01266 FAD dependent oxidoreductase ND438_07455 PF00842 Alanine racemase, C-terminal domain ND438_07455 PF01168 Alanine racemase, N-terminal domain ND438_07460 PF07690 Major Facilitator Superfamily ND438_07470 PF00990 Diguanylate cyclase, GGDEF domain ND438_07470 PF13426 PAS domain ND438_07470 PF00563 EAL domain ND438_07475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_07475 PF03466 LysR substrate binding domain ND438_07480 PF03306 Alpha-acetolactate decarboxylase ND438_07485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND438_07485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND438_07485 PF00205 Thiamine pyrophosphate enzyme, central domain ND438_07490 PF04285 Protein of unknown function (DUF444) ND438_07495 PF06798 PrkA serine protein kinase C-terminal domain ND438_07495 PF08298 PrkA AAA domain ND438_07505 PF06629 MltA-interacting protein MipA ND438_07510 PF00884 Sulfatase ND438_07515 PF01263 Aldose 1-epimerase ND438_07520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND438_07520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND438_07525 PF01641 SelR domain ND438_07530 PF07023 Protein of unknown function (DUF1315) ND438_07535 PF00857 Isochorismatase family ND438_07540 PF00710 Asparaginase, N-terminal ND438_07540 PF17763 Glutaminase/Asparaginase C-terminal domain ND438_07545 PF01343 Peptidase family S49 ND438_07550 PF00881 Nitroreductase family ND438_07555 PF00586 AIR synthase related protein, N-terminal domain ND438_07555 PF02769 AIR synthase related protein, C-terminal domain ND438_07560 PF01131 DNA topoisomerase ND438_07560 PF01751 Toprim domain ND438_07565 PF07383 Protein of unknown function (DUF1496) ND438_07570 PF00293 NUDIX domain ND438_07575 PF03372 Endonuclease/Exonuclease/phosphatase family ND438_07585 PF03466 LysR substrate binding domain ND438_07585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_07605 PF00551 Formyl transferase ND438_07605 PF01842 ACT domain ND438_07610 PF02810 SEC-C motif ND438_07615 PF01734 Patatin-like phospholipase ND438_07620 PF00072 Response regulator receiver domain ND438_07625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND438_07625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND438_07625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND438_07630 PF00816 H-NS histone family ND438_07635 PF00265 Thymidine kinase ND438_07640 PF00171 Aldehyde dehydrogenase family ND438_07640 PF00465 Iron-containing alcohol dehydrogenase ND438_07650 PF01914 MarC family integral membrane protein ND438_07655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND438_07660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND438_07665 PF00528 Binding-protein-dependent transport system inner membrane component ND438_07670 PF12911 N-terminal TM domain of oligopeptide transport permease C ND438_07670 PF00528 Binding-protein-dependent transport system inner membrane component ND438_07675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND438_07675 PF00005 ABC transporter ND438_07680 PF00005 ABC transporter ND438_07680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND438_07685 PF04269 Protein of unknown function, DUF440 ND438_07690 PF13091 PLD-like domain ND438_07690 PF13396 Phospholipase_D-nuclease N-terminal ND438_07710 PF03795 YCII-related domain ND438_07725 PF00486 Transcriptional regulatory protein, C terminal ND438_07735 PF02753 Pili assembly chaperone PapD, C-terminal domain ND438_07735 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_07740 PF13953 PapC C-terminal domain ND438_07740 PF13954 PapC N-terminal domain ND438_07740 PF00577 Outer membrane usher protein ND438_07760 PF03544 Gram-negative bacterial TonB protein C-terminal ND438_07765 PF03061 Thioesterase superfamily ND438_07770 PF04279 Intracellular septation protein A ND438_07775 PF00916 Sulfate permease family ND438_07775 PF01740 STAS domain ND438_07785 PF03692 Putative zinc- or iron-chelating domain ND438_07790 PF03922 OmpW family ND438_07800 PF00290 Tryptophan synthase alpha chain ND438_07805 PF00291 Pyridoxal-phosphate dependent enzyme ND438_07810 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND438_07810 PF00218 Indole-3-glycerol phosphate synthase ND438_07815 PF02885 Glycosyl transferase family, helical bundle domain ND438_07815 PF00591 Glycosyl transferase family, a/b domain ND438_07820 PF00117 Glutamine amidotransferase class-I ND438_07825 PF04715 Anthranilate synthase component I, N terminal region ND438_07825 PF00425 chorismate binding enzyme ND438_07830 PF02811 PHP domain ND438_07835 PF01300 Telomere recombination ND438_07855 PF00849 RNA pseudouridylate synthase ND438_07855 PF01479 S4 domain ND438_07860 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND438_07865 PF00106 short chain dehydrogenase ND438_07870 PF01343 Peptidase family S49 ND438_07870 PF08496 Peptidase family S49 N-terminal ND438_07875 PF10692 Protein of unknown function (DUF2498) ND438_07880 PF08272 Topoisomerase I zinc-ribbon-like ND438_07880 PF01131 DNA topoisomerase ND438_07880 PF01396 Topoisomerase DNA binding C4 zinc finger ND438_07880 PF01751 Toprim domain ND438_07885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_07885 PF03466 LysR substrate binding domain ND438_07900 PF00330 Aconitase family (aconitate hydratase) ND438_07900 PF00694 Aconitase C-terminal domain ND438_07905 PF00925 GTP cyclohydrolase II ND438_07910 PF01569 PAP2 superfamily ND438_07915 PF06305 Lipopolysaccharide assembly protein A domain ND438_07920 PF18073 Rubredoxin metal binding domain ND438_07930 PF07338 Protein of unknown function (DUF1471) ND438_07935 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND438_07940 PF01253 Translation initiation factor SUI1 ND438_07945 PF05433 Glycine zipper 2TM domain ND438_07950 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND438_07955 PF05231 MASE1 ND438_07955 PF08448 PAS fold ND438_07955 PF08447 PAS fold ND438_07955 PF13426 PAS domain ND438_07955 PF00990 Diguanylate cyclase, GGDEF domain ND438_07955 PF00563 EAL domain ND438_07960 PF08206 Ribonuclease B OB domain ND438_07960 PF00773 RNB domain ND438_07960 PF00575 S1 RNA binding domain ND438_07965 PF10576 Iron-sulfur binding domain of endonuclease III ND438_07965 PF00633 Helix-hairpin-helix motif ND438_07965 PF00730 HhH-GPD superfamily base excision DNA repair protein ND438_07970 PF02508 Rnf-Nqr subunit, membrane protein ND438_07975 PF04205 FMN-binding domain ND438_07980 PF03116 NQR2, RnfD, RnfE family ND438_07985 PF06445 GyrI-like small molecule binding domain ND438_07985 PF12833 Helix-turn-helix domain ND438_07990 PF13237 4Fe-4S dicluster domain ND438_07990 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND438_07990 PF13375 RnfC Barrel sandwich hybrid domain ND438_07990 PF10531 SLBB domain ND438_07995 PF04060 Putative Fe-S cluster ND438_08000 PF02508 Rnf-Nqr subunit, membrane protein ND438_08005 PF10754 Protein of unknown function (DUF2569) ND438_08010 PF01268 Formate--tetrahydrofolate ligase ND438_08015 PF03848 Tellurite resistance protein TehB ND438_08015 PF09313 Domain of unknown function (DUF1971) ND438_08020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND438_08020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND438_08025 PF13593 SBF-like CPA transporter family (DUF4137) ND438_08030 PF00962 Adenosine/AMP deaminase ND438_08035 PF06097 Bacterial protein of unknown function (DUF945) ND438_08040 PF01238 Phosphomannose isomerase type I ND438_08045 PF00206 Lyase ND438_08045 PF10415 Fumarase C C-terminus ND438_08050 PF05472 DNA replication terminus site-binding protein (Ter protein) ND438_08055 PF00480 ROK family ND438_08065 PF00654 Voltage gated chloride channel ND438_08070 PF06649 Protein of unknown function (DUF1161) ND438_08075 PF06932 Protein of unknown function (DUF1283) ND438_08080 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND438_08085 PF00106 short chain dehydrogenase ND438_08090 PF01510 N-acetylmuramoyl-L-alanine amidase ND438_08110 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND438_08110 PF01048 Phosphorylase superfamily ND438_08150 PF13419 Haloacid dehalogenase-like hydrolase ND438_08160 PF06445 GyrI-like small molecule binding domain ND438_08165 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND438_08165 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND438_08170 PF00027 Cyclic nucleotide-binding domain ND438_08170 PF13545 Crp-like helix-turn-helix domain ND438_08175 PF00582 Universal stress protein family ND438_08185 PF00455 DeoR C terminal sensor domain ND438_08185 PF08220 DeoR-like helix-turn-helix domain ND438_08190 PF03611 PTS system sugar-specific permease component ND438_08195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND438_08200 PF00596 Class II Aldolase and Adducin N-terminal domain ND438_08205 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND438_08210 PF01261 Xylose isomerase-like TIM barrel ND438_08215 PF02233 NAD(P) transhydrogenase beta subunit ND438_08220 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND438_08220 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND438_08220 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND438_08225 PF07338 Protein of unknown function (DUF1471) ND438_08230 PF13520 Amino acid permease ND438_08240 PF00072 Response regulator receiver domain ND438_08240 PF00486 Transcriptional regulatory protein, C terminal ND438_08245 PF00672 HAMP domain ND438_08245 PF00512 His Kinase A (phospho-acceptor) domain ND438_08245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_08250 PF00080 Copper/zinc superoxide dismutase (SODC) ND438_08255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND438_08260 PF12833 Helix-turn-helix domain ND438_08265 PF01161 Phosphatidylethanolamine-binding protein ND438_08270 PF06392 Acid shock protein repeat ND438_08275 PF00089 Trypsin ND438_08280 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND438_08280 PF00271 Helicase conserved C-terminal domain ND438_08280 PF11898 Domain of unknown function (DUF3418) ND438_08280 PF00270 DEAD/DEAH box helicase ND438_08280 PF04408 Helicase associated domain (HA2) ND438_08285 PF02525 Flavodoxin-like fold ND438_08290 PF07027 Protein of unknown function (DUF1318) ND438_08295 PF13617 YnbE-like lipoprotein ND438_08305 PF11739 Dicarboxylate transport ND438_08310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND438_08310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND438_08315 PF03724 META domain ND438_08320 PF03891 Domain of unknown function (DUF333) ND438_08325 PF02308 MgtC family ND438_08330 PF00893 Small Multidrug Resistance protein ND438_08335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND438_08335 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND438_08335 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND438_08335 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND438_08335 PF10371 Domain of unknown function ND438_08340 PF01171 PP-loop family ND438_08345 PF01544 CorA-like Mg2+ transporter protein ND438_08350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND438_08355 PF00246 Zinc carboxypeptidase ND438_08360 PF13378 Enolase C-terminal domain-like ND438_08360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND438_08365 PF08534 Redoxin ND438_08370 PF18024 Helix-turn-helix domain ND438_08370 PF00158 Sigma-54 interaction domain ND438_08375 PF09722 Protein of unknown function (DUF2384) ND438_08380 PF08808 RES domain ND438_08385 PF05128 Domain of unknown function (DUF697) ND438_08390 PF04317 YcjX-like family, DUF463 ND438_08395 PF09584 Phage shock protein PspD (Phageshock_PspD) ND438_08400 PF04024 PspC domain ND438_08405 PF06667 Phage shock protein B ND438_08410 PF04012 PspA/IM30 family ND438_08415 PF02954 Bacterial regulatory protein, Fis family ND438_08415 PF00158 Sigma-54 interaction domain ND438_08425 PF02917 Pertussis toxin, subunit 1 ND438_08430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND438_08435 PF00528 Binding-protein-dependent transport system inner membrane component ND438_08440 PF00528 Binding-protein-dependent transport system inner membrane component ND438_08440 PF12911 N-terminal TM domain of oligopeptide transport permease C ND438_08445 PF00005 ABC transporter ND438_08445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND438_08450 PF00005 ABC transporter ND438_08460 PF00854 POT family ND438_08470 PF01556 DnaJ C terminal domain ND438_08470 PF00226 DnaJ domain ND438_08480 PF04893 Yip1 domain ND438_08490 PF11656 YjbD family (DUF3811) ND438_08495 PF00043 Glutathione S-transferase, C-terminal domain ND438_08495 PF02798 Glutathione S-transferase, N-terminal domain ND438_08500 PF08543 Phosphomethylpyrimidine kinase ND438_08505 PF01479 S4 domain ND438_08505 PF00579 tRNA synthetases class I (W and Y) ND438_08510 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND438_08510 PF01243 Pyridoxamine 5'-phosphate oxidase ND438_08515 PF03702 Anhydro-N-acetylmuramic acid kinase ND438_08520 PF05433 Glycine zipper 2TM domain ND438_08525 PF01047 MarR family ND438_08535 PF00248 Aldo/keto reductase family ND438_08540 PF06945 Protein of unknown function (DUF1289) ND438_08545 PF08019 Phosphoethanolamine transferase EptA/EptB ND438_08545 PF00884 Sulfatase ND438_08550 PF16925 Tetracyclin repressor-like, C-terminal domain ND438_08550 PF00440 Bacterial regulatory proteins, tetR family ND438_08555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND438_08560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND438_08565 PF00929 Exonuclease ND438_08570 PF00462 Glutaredoxin ND438_08575 PF00877 NlpC/P60 family ND438_08580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND438_08580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND438_08590 PF00356 Bacterial regulatory proteins, lacI family ND438_08595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_08595 PF03466 LysR substrate binding domain ND438_08600 PF07690 Major Facilitator Superfamily ND438_08610 PF00677 Lumazine binding domain ND438_08615 PF01554 MatE ND438_08635 PF02887 Pyruvate kinase, alpha/beta domain ND438_08635 PF00224 Pyruvate kinase, barrel domain ND438_08640 PF04728 Lipoprotein leucine-zipper ND438_08645 PF17969 L,D-transpeptidase C-terminal domain ND438_08645 PF01476 LysM domain ND438_08645 PF03734 L,D-transpeptidase catalytic domain ND438_08650 PF02657 Fe-S metabolism associated domain ND438_08655 PF00266 Aminotransferase class-V ND438_08660 PF01458 Uncharacterized protein family (UPF0051) ND438_08665 PF00005 ABC transporter ND438_08670 PF01458 Uncharacterized protein family (UPF0051) ND438_08675 PF01521 Iron-sulphur cluster biosynthesis ND438_08680 PF03061 Thioesterase superfamily ND438_08685 PF02913 FAD linked oxidases, C-terminal domain ND438_08685 PF01565 FAD binding domain ND438_08685 PF13183 4Fe-4S dicluster domain ND438_08690 PF01594 AI-2E family transporter ND438_08700 PF00391 PEP-utilising enzyme, mobile domain ND438_08700 PF02896 PEP-utilising enzyme, TIM barrel domain ND438_08700 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND438_08705 PF03618 Kinase/pyrophosphorylase ND438_08710 PF00793 DAHP synthetase I family ND438_08715 PF10636 Hemin uptake protein hemP ND438_08720 PF07715 TonB-dependent Receptor Plug Domain ND438_08720 PF00593 TonB dependent receptor ND438_08725 PF05171 Haemin-degrading HemS.ChuX domain ND438_08730 PF01497 Periplasmic binding protein ND438_08735 PF01032 FecCD transport family ND438_08740 PF00005 ABC transporter ND438_08745 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND438_08750 PF10437 Bacterial lipoate protein ligase C-terminus ND438_08750 PF03099 Biotin/lipoate A/B protein ligase family ND438_08755 PF00877 NlpC/P60 family ND438_08765 PF00892 EamA-like transporter family ND438_08770 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND438_08775 PF01522 Polysaccharide deacetylase ND438_08780 PF00551 Formyl transferase ND438_08780 PF02911 Formyl transferase, C-terminal domain ND438_08780 PF01370 NAD dependent epimerase/dehydratase family ND438_08785 PF00535 Glycosyl transferase family 2 ND438_08790 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND438_08795 PF00005 ABC transporter ND438_08800 PF01032 FecCD transport family ND438_08805 PF13411 MerR HTH family regulatory protein ND438_08805 PF00145 C-5 cytosine-specific DNA methylase ND438_08810 PF09553 Eco47II restriction endonuclease ND438_08845 PF02661 Fic/DOC family ND438_08860 PF05154 TM2 domain ND438_08865 PF00216 Bacterial DNA-binding protein ND438_08870 PF03483 B3/4 domain ND438_08870 PF03484 tRNA synthetase B5 domain ND438_08870 PF03147 Ferredoxin-fold anticodon binding domain ND438_08870 PF01588 Putative tRNA binding domain ND438_08870 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND438_08875 PF01409 tRNA synthetases class II core domain (F) ND438_08875 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND438_08880 PF00453 Ribosomal protein L20 ND438_08885 PF01632 Ribosomal protein L35 ND438_08890 PF00707 Translation initiation factor IF-3, C-terminal domain ND438_08890 PF05198 Translation initiation factor IF-3, N-terminal domain ND438_08895 PF03129 Anticodon binding domain ND438_08895 PF02824 TGS domain ND438_08895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND438_08895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND438_08925 PF01914 MarC family integral membrane protein ND438_08930 PF01464 Transglycosylase SLT domain ND438_08935 PF01297 Zinc-uptake complex component A periplasmic ND438_08940 PF00005 ABC transporter ND438_08945 PF00950 ABC 3 transport family ND438_08950 PF00950 ABC 3 transport family ND438_08955 PF03881 Fructosamine kinase ND438_08960 PF14002 YniB-like protein ND438_08965 PF13419 Haloacid dehalogenase-like hydrolase ND438_08970 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND438_08975 PF00375 Sodium:dicarboxylate symporter family ND438_08980 PF01510 N-acetylmuramoyl-L-alanine amidase ND438_08985 PF09339 IclR helix-turn-helix domain ND438_08985 PF01614 Bacterial transcriptional regulator ND438_08990 PF07690 Major Facilitator Superfamily ND438_09000 PF01435 Peptidase family M48 ND438_09005 PF11818 C-terminal domain of tail specific protease (DUF3340) ND438_09005 PF00595 PDZ domain ND438_09005 PF03572 Peptidase family S41 ND438_09005 PF17804 Tail specific protease N-terminal domain ND438_09010 PF04352 ProQ/FINO family ND438_09010 PF17516 ProQ C-terminal domain ND438_09015 PF13185 GAF domain ND438_09020 PF04403 Paraquat-inducible protein A ND438_09025 PF02470 MlaD protein ND438_09030 PF00563 EAL domain ND438_09030 PF01590 GAF domain ND438_09030 PF00990 Diguanylate cyclase, GGDEF domain ND438_09030 PF00360 Phytochrome region ND438_09035 PF07351 Protein of unknown function (DUF1480) ND438_09060 PF05643 Putative bacterial lipoprotein (DUF799) ND438_09070 PF03783 Curli production assembly/transport component CsgG ND438_09075 PF10753 Toxin GhoT_OrtT ND438_09095 PF00144 Beta-lactamase ND438_09240 PF00959 Phage lysozyme ND438_09245 PF04971 Bacteriophage P21 holin S ND438_09265 PF07102 Protein of unknown function (DUF1364) ND438_09275 PF05063 MT-A70 ND438_09280 PF01555 DNA methylase ND438_09290 PF01580 FtsK/SpoIIIE family ND438_09290 PF09397 Ftsk gamma domain ND438_09290 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND438_09290 PF17854 FtsK alpha domain ND438_09330 PF01381 Helix-turn-helix ND438_09330 PF00717 Peptidase S24-like ND438_09395 PF07825 Excisionase-like protein ND438_09405 PF10709 Protein of unknown function (DUF2511) ND438_09410 PF05425 Copper resistance protein D ND438_09415 PF04234 CopC domain ND438_09420 PF00210 Ferritin-like domain ND438_09425 PF06440 DNA polymerase III, theta subunit ND438_09430 PF00561 alpha/beta hydrolase fold ND438_09440 PF00326 Prolyl oligopeptidase family ND438_09440 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND438_09445 PF13995 YebF-like protein ND438_09450 PF04266 ASCH domain ND438_09455 PF07130 YebG protein ND438_09460 PF00270 DEAD/DEAH box helicase ND438_09460 PF00271 Helicase conserved C-terminal domain ND438_09460 PF03880 DbpA RNA binding domain ND438_09465 PF02222 ATP-grasp domain ND438_09470 PF03701 Uncharacterised protein family (UPF0181) ND438_09475 PF04715 Anthranilate synthase component I, N terminal region ND438_09475 PF00425 chorismate binding enzyme ND438_09480 PF00293 NUDIX domain ND438_09485 PF03313 Serine dehydratase alpha chain ND438_09485 PF03315 Serine dehydratase beta chain ND438_09490 PF03471 Transporter associated domain ND438_09490 PF03741 Integral membrane protein TerC family ND438_09495 PF03610 PTS system fructose IIA component ND438_09495 PF03830 PTS system sorbose subfamily IIB component ND438_09500 PF03609 PTS system sorbose-specific iic component ND438_09505 PF03613 PTS system mannose/fructose/sorbose family IID component ND438_09510 PF06173 Protein of unknown function (DUF986) ND438_09515 PF02659 Putative manganese efflux pump ND438_09520 PF02441 Flavoprotein ND438_09535 PF02770 Acyl-CoA dehydrogenase, middle domain ND438_09535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND438_09535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND438_09545 PF05199 GMC oxidoreductase ND438_09545 PF00732 GMC oxidoreductase ND438_09550 PF00501 AMP-binding enzyme ND438_09550 PF13193 AMP-binding enzyme C-terminal domain ND438_09550 PF00550 Phosphopantetheine attachment site ND438_09550 PF00668 Condensation domain ND438_09555 PF07690 Major Facilitator Superfamily ND438_09575 PF13847 Methyltransferase domain ND438_09580 PF00905 Penicillin binding protein transpeptidase domain ND438_09580 PF03717 Penicillin-binding Protein dimerisation domain ND438_09585 PF02578 Multi-copper polyphenol oxidoreductase laccase ND438_09590 PF00313 'Cold-shock' DNA-binding domain ND438_09595 PF10736 Protein of unknown function (DUF2627) ND438_09600 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND438_09605 PF00324 Amino acid permease ND438_09620 PF13974 YebO-like protein ND438_09625 PF13998 MgrB protein ND438_09630 PF13996 YobH-like protein ND438_09635 PF10964 Protein of unknown function (DUF2766) ND438_09640 PF12833 Helix-turn-helix domain ND438_09655 PF13520 Amino acid permease ND438_09660 PF00664 ABC transporter transmembrane region ND438_09660 PF00005 ABC transporter ND438_09670 PF00360 Phytochrome region ND438_09670 PF01590 GAF domain ND438_09670 PF00563 EAL domain ND438_09670 PF00990 Diguanylate cyclase, GGDEF domain ND438_09675 PF03372 Endonuclease/Exonuclease/phosphatase family ND438_09685 PF06411 HdeA/HdeB family ND438_09690 PF07478 D-ala D-ala ligase C-terminus ND438_09690 PF01820 D-ala D-ala ligase N-terminus ND438_09705 PF08241 Methyltransferase domain ND438_09710 PF00313 'Cold-shock' DNA-binding domain ND438_09715 PF00313 'Cold-shock' DNA-binding domain ND438_09720 PF00313 'Cold-shock' DNA-binding domain ND438_09730 PF04794 YdjC-like protein ND438_09735 PF07883 Cupin domain ND438_09735 PF12833 Helix-turn-helix domain ND438_09740 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND438_09745 PF00232 Glycosyl hydrolase family 1 ND438_09750 PF02378 Phosphotransferase system, EIIC ND438_09755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND438_09760 PF00849 RNA pseudouridylate synthase ND438_09760 PF01479 S4 domain ND438_09770 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND438_09775 PF03553 Na+/H+ antiporter family ND438_09785 PF13520 Amino acid permease ND438_09800 PF00849 RNA pseudouridylate synthase ND438_09805 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND438_09810 PF13520 Amino acid permease ND438_09815 PF04960 Glutaminase ND438_09845 PF13673 Acetyltransferase (GNAT) domain ND438_09855 PF00034 Cytochrome c ND438_09855 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND438_09865 PF00528 Binding-protein-dependent transport system inner membrane component ND438_09870 PF00005 ABC transporter ND438_09880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND438_09880 PF00672 HAMP domain ND438_09880 PF02203 Tar ligand binding domain homologue ND438_09885 PF13333 Integrase core domain ND438_09885 PF13276 HTH-like domain ND438_09885 PF00665 Integrase core domain ND438_09905 PF01066 CDP-alcohol phosphatidyltransferase ND438_09910 PF01541 GIY-YIG catalytic domain ND438_09910 PF02151 UvrB/uvrC motif ND438_09910 PF08459 UvrC Helix-hairpin-helix N-terminal ND438_09915 PF00072 Response regulator receiver domain ND438_09915 PF00196 Bacterial regulatory proteins, luxR family ND438_09920 PF10769 Protein of unknown function (DUF2594) ND438_09940 PF00324 Amino acid permease ND438_09945 PF01276 Orn/Lys/Arg decarboxylase, major domain ND438_09945 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND438_09945 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND438_09950 PF13520 Amino acid permease ND438_09955 PF18500 CadC C-terminal domain 1 ND438_09955 PF00486 Transcriptional regulatory protein, C terminal ND438_09960 PF00474 Sodium:solute symporter family ND438_09965 PF00171 Aldehyde dehydrogenase family ND438_09965 PF01619 Proline dehydrogenase ND438_09965 PF14850 DNA-binding domain of Proline dehydrogenase ND438_09965 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND438_09970 PF00005 ABC transporter ND438_09975 PF00528 Binding-protein-dependent transport system inner membrane component ND438_09980 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_09985 PF00291 Pyridoxal-phosphate dependent enzyme ND438_09990 PF02899 Phage integrase, N-terminal SAM-like domain ND438_09995 PF04542 Sigma-70 region 2 ND438_09995 PF04539 Sigma-70 region 3 ND438_09995 PF04545 Sigma-70, region 4 ND438_10000 PF00700 Bacterial flagellin C-terminal helical region ND438_10000 PF08884 Flagellin D3 domain ND438_10000 PF00669 Bacterial flagellin N-terminal helical region ND438_10005 PF00700 Bacterial flagellin C-terminal helical region ND438_10005 PF08884 Flagellin D3 domain ND438_10005 PF00669 Bacterial flagellin N-terminal helical region ND438_10010 PF00669 Bacterial flagellin N-terminal helical region ND438_10010 PF00700 Bacterial flagellin C-terminal helical region ND438_10010 PF08884 Flagellin D3 domain ND438_10015 PF07195 Flagellar hook-associated protein 2 C-terminus ND438_10015 PF07196 Flagellin hook IN motif ND438_10015 PF02465 Flagellar hook-associated protein 2 N-terminus ND438_10020 PF02561 Flagellar protein FliS ND438_10025 PF05400 Flagellar protein FliT ND438_10030 PF12833 Helix-turn-helix domain ND438_10035 PF01966 HD domain ND438_10040 PF02254 TrkA-N domain ND438_10040 PF07885 Ion channel ND438_10045 PF01223 DNA/RNA non-specific endonuclease ND438_10050 PF02049 Flagellar hook-basal body complex protein FliE ND438_10055 PF01514 Secretory protein of YscJ/FliF family ND438_10055 PF08345 Flagellar M-ring protein C-terminal ND438_10060 PF01706 FliG C-terminal domain ND438_10060 PF14841 FliG middle domain ND438_10060 PF14842 FliG N-terminal domain ND438_10065 PF02108 Flagellar assembly protein FliH ND438_10070 PF18269 T3SS EscN ATPase C-terminal domain ND438_10070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND438_10075 PF02050 Flagellar FliJ protein ND438_10080 PF02120 Flagellar hook-length control protein FliK ND438_10085 PF03748 Flagellar basal body-associated protein FliL ND438_10090 PF02154 Flagellar motor switch protein FliM ND438_10090 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND438_10095 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND438_10095 PF16973 Flagellar motor switch protein FliN N-terminal ND438_10100 PF04347 Flagellar biosynthesis protein, FliO ND438_10105 PF00813 FliP family ND438_10110 PF01313 Bacterial export proteins, family 3 ND438_10115 PF01311 Bacterial export proteins, family 1 ND438_10120 PF00669 Bacterial flagellin N-terminal helical region ND438_10125 PF00460 Flagella basal body rod protein ND438_10125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND438_10130 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND438_10130 PF10135 Rod binding protein ND438_10135 PF02119 Flagellar P-ring protein ND438_10140 PF02107 Flagellar L-ring protein ND438_10145 PF00460 Flagella basal body rod protein ND438_10145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND438_10150 PF00460 Flagella basal body rod protein ND438_10150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND438_10155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND438_10155 PF00460 Flagella basal body rod protein ND438_10155 PF07559 Flagellar basal body protein FlaE ND438_10160 PF03963 Flagellar hook capping protein - N-terminal region ND438_10160 PF13860 FlgD Ig-like domain ND438_10160 PF13861 FlgD Tudor-like domain ND438_10165 PF00460 Flagella basal body rod protein ND438_10165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND438_10170 PF00460 Flagella basal body rod protein ND438_10175 PF13144 Chaperone for flagella basal body P-ring formation ND438_10175 PF17656 FlgA N-terminal domain ND438_10180 PF04316 Anti-sigma-28 factor, FlgM ND438_10185 PF05130 FlgN protein ND438_10190 PF06366 Flagellar protein FlhE ND438_10195 PF00771 FHIPEP family ND438_10200 PF01312 FlhB HrpN YscU SpaS Family ND438_10205 PF01483 Proprotein convertase P-domain ND438_10205 PF00082 Subtilase family ND438_10210 PF00196 Bacterial regulatory proteins, luxR family ND438_10220 PF00419 Fimbrial protein ND438_10225 PF00577 Outer membrane usher protein ND438_10225 PF13953 PapC C-terminal domain ND438_10225 PF13954 PapC N-terminal domain ND438_10230 PF02753 Pili assembly chaperone PapD, C-terminal domain ND438_10230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_10240 PF00419 Fimbrial protein ND438_10270 PF04344 Chemotaxis phosphatase, CheZ ND438_10275 PF00072 Response regulator receiver domain ND438_10280 PF00072 Response regulator receiver domain ND438_10280 PF01339 CheB methylesterase ND438_10285 PF03705 CheR methyltransferase, all-alpha domain ND438_10285 PF01739 CheR methyltransferase, SAM binding domain ND438_10290 PF02203 Tar ligand binding domain homologue ND438_10290 PF00672 HAMP domain ND438_10290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND438_10295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND438_10295 PF02203 Tar ligand binding domain homologue ND438_10295 PF00672 HAMP domain ND438_10300 PF01584 CheW-like domain ND438_10305 PF02895 Signal transducing histidine kinase, homodimeric domain ND438_10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_10305 PF01627 Hpt domain ND438_10305 PF01584 CheW-like domain ND438_10305 PF09078 CheY binding ND438_10310 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND438_10310 PF00691 OmpA family ND438_10315 PF01618 MotA/TolQ/ExbB proton channel family ND438_10320 PF05280 Flagellar transcriptional activator (FlhC) ND438_10325 PF05247 Flagellar transcriptional activator (FlhD) ND438_10330 PF00582 Universal stress protein family ND438_10335 PF02308 MgtC family ND438_10340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND438_10340 PF02203 Tar ligand binding domain homologue ND438_10340 PF00672 HAMP domain ND438_10345 PF10781 Dextransucrase DSRB ND438_10350 PF00313 'Cold-shock' DNA-binding domain ND438_10355 PF00356 Bacterial regulatory proteins, lacI family ND438_10360 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND438_10360 PF00703 Glycosyl hydrolases family 2 ND438_10360 PF16353 Domain of unknown function(DUF4981) ND438_10360 PF02929 Beta galactosidase small chain ND438_10360 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND438_10365 PF00698 Acyl transferase domain ND438_10365 PF08240 Alcohol dehydrogenase GroES-like domain ND438_10365 PF16197 Ketoacyl-synthetase C-terminal extension ND438_10365 PF00109 Beta-ketoacyl synthase, N-terminal domain ND438_10365 PF02801 Beta-ketoacyl synthase, C-terminal domain ND438_10365 PF08659 KR domain ND438_10365 PF00550 Phosphopantetheine attachment site ND438_10365 PF14765 Polyketide synthase dehydratase ND438_10365 PF00107 Zinc-binding dehydrogenase ND438_10370 PF10777 Inner membrane protein YlaC ND438_10380 PF14001 YdfZ protein ND438_10390 PF06167 Glucose-regulated metallo-peptidase M90 ND438_10400 PF00589 Phage integrase family ND438_10400 PF13356 Arm DNA-binding domain ND438_10415 PF13693 Winged helix-turn-helix DNA-binding ND438_10450 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ND438_10470 PF04335 VirB8 protein ND438_10475 PF03524 Conjugal transfer protein ND438_10480 PF03743 Bacterial conjugation TrbI-like protein ND438_10485 PF00437 Type II/IV secretion system protein ND438_10500 PF18818 Metallopeptidase superfamily domain ND438_10500 PF08401 Domain of unknown function (DUF1738) ND438_10555 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND438_10555 PF01648 4'-phosphopantetheinyl transferase superfamily ND438_10560 PF00939 Sodium:sulfate symporter transmembrane region ND438_10565 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND438_10570 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND438_10575 PF04223 Citrate lyase, alpha subunit (CitF) ND438_10580 PF03328 HpcH/HpaI aldolase/citrate lyase family ND438_10585 PF06857 Malonate decarboxylase delta subunit (MdcD) ND438_10590 PF08218 Citrate lyase ligase C-terminal domain ND438_10595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_10595 PF00989 PAS fold ND438_10595 PF17203 Single cache domain 3 ND438_10595 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND438_10600 PF12431 Transcriptional regulator ND438_10600 PF00072 Response regulator receiver domain ND438_10605 PF00196 Bacterial regulatory proteins, luxR family ND438_10605 PF00072 Response regulator receiver domain ND438_10610 PF07730 Histidine kinase ND438_10610 PF05231 MASE1 ND438_10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_10615 PF07690 Major Facilitator Superfamily ND438_10625 PF00528 Binding-protein-dependent transport system inner membrane component ND438_10630 PF00005 ABC transporter ND438_10630 PF08402 TOBE domain ND438_10645 PF04363 Protein of unknown function (DUF496) ND438_10650 PF04632 Fusaric acid resistance protein family ND438_10660 PF08411 Exonuclease C-terminal ND438_10660 PF00929 Exonuclease ND438_10665 PF13520 Amino acid permease ND438_10670 PF07715 TonB-dependent Receptor Plug Domain ND438_10670 PF00593 TonB dependent receptor ND438_10675 PF00005 ABC transporter ND438_10680 PF01032 FecCD transport family ND438_10690 PF00324 Amino acid permease ND438_10695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_10695 PF03466 LysR substrate binding domain ND438_10705 PF03601 Conserved hypothetical protein 698 ND438_10710 PF01261 Xylose isomerase-like TIM barrel ND438_10715 PF02378 Phosphotransferase system, EIIC ND438_10715 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND438_10720 PF00294 pfkB family carbohydrate kinase ND438_10725 PF00381 PTS HPr component phosphorylation site ND438_10725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND438_10730 PF00293 NUDIX domain ND438_10735 PF03264 NapC/NirT cytochrome c family, N-terminal region ND438_10740 PF18364 Molybdopterin oxidoreductase N-terminal domain ND438_10740 PF01568 Molydopterin dinucleotide binding domain ND438_10740 PF00384 Molybdopterin oxidoreductase ND438_10745 PF03692 Putative zinc- or iron-chelating domain ND438_10750 PF03222 Tryptophan/tyrosine permease family ND438_10760 PF09285 Elongation factor P, C-terminal ND438_10760 PF08207 Elongation factor P (EF-P) KOW-like domain ND438_10760 PF01132 Elongation factor P (EF-P) OB domain ND438_10765 PF03786 D-mannonate dehydratase (UxuA) ND438_10770 PF01232 Mannitol dehydrogenase Rossmann domain ND438_10770 PF08125 Mannitol dehydrogenase C-terminal domain ND438_10780 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND438_10780 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND438_10785 PF01569 PAP2 superfamily ND438_10790 PF00877 NlpC/P60 family ND438_10795 PF12792 CSS motif domain associated with EAL ND438_10795 PF00563 EAL domain ND438_10800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND438_10805 PF00528 Binding-protein-dependent transport system inner membrane component ND438_10810 PF12911 N-terminal TM domain of oligopeptide transport permease C ND438_10810 PF00528 Binding-protein-dependent transport system inner membrane component ND438_10815 PF00005 ABC transporter ND438_10815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND438_10820 PF13989 YejG-like protein ND438_10825 PF07690 Major Facilitator Superfamily ND438_10830 PF01479 S4 domain ND438_10830 PF00849 RNA pseudouridylate synthase ND438_10835 PF00271 Helicase conserved C-terminal domain ND438_10835 PF04851 Type III restriction enzyme, res subunit ND438_10840 PF01386 Ribosomal L25p family ND438_10845 PF04245 37-kD nucleoid-associated bacterial protein ND438_10850 PF07208 Protein of unknown function (DUF1414) ND438_10855 PF11893 Domain of unknown function (DUF3413) ND438_10855 PF00884 Sulfatase ND438_10870 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND438_10880 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) ND438_10885 PF04865 Baseplate J-like protein ND438_10930 PF04984 Phage tail sheath protein subtilisin-like domain ND438_10930 PF17482 Phage tail sheath C-terminal domain ND438_10980 PF03354 Phage Terminase ND438_11000 PF03245 Bacteriophage Rz lysis protein ND438_11005 PF13539 D-alanyl-D-alanine carboxypeptidase ND438_11030 PF03793 PASTA domain ND438_11030 PF00069 Protein kinase domain ND438_11035 PF01555 DNA methylase ND438_11045 PF06147 Protein of unknown function (DUF968) ND438_11060 PF05869 DNA N-6-adenine-methyltransferase (Dam) ND438_11065 PF03354 Phage Terminase ND438_11100 PF10065 Uncharacterized conserved protein (DUF2303) ND438_11145 PF06183 DinI-like family ND438_11150 PF12706 Beta-lactamase superfamily domain ND438_11155 PF00144 Beta-lactamase ND438_11160 PF13302 Acetyltransferase (GNAT) domain ND438_11175 PF00267 Gram-negative porin ND438_11180 PF07690 Major Facilitator Superfamily ND438_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_11185 PF16359 RcsD-ABL domain ND438_11185 PF01627 Hpt domain ND438_11190 PF00072 Response regulator receiver domain ND438_11190 PF00196 Bacterial regulatory proteins, luxR family ND438_11195 PF00072 Response regulator receiver domain ND438_11195 PF09456 RcsC Alpha-Beta-Loop (ABL) ND438_11195 PF00512 His Kinase A (phospho-acceptor) domain ND438_11195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_11200 PF00521 DNA gyrase/topoisomerase IV, subunit A ND438_11200 PF03989 DNA gyrase C-terminal domain, beta-propeller ND438_11210 PF03477 ATP cone domain ND438_11210 PF02867 Ribonucleotide reductase, barrel domain ND438_11210 PF00317 Ribonucleotide reductase, all-alpha domain ND438_11215 PF00268 Ribonucleotide reductase, small chain ND438_11220 PF00111 2Fe-2S iron-sulfur cluster binding domain ND438_11230 PF03974 Ecotin ND438_11235 PF00994 Probable molybdopterin binding domain ND438_11240 PF04138 GtrA-like protein ND438_11245 PF00535 Glycosyl transferase family 2 ND438_11255 PF03222 Tryptophan/tyrosine permease family ND438_11260 PF07437 YfaZ precursor ND438_11265 PF00199 Catalase ND438_11265 PF06628 Catalase-related immune-responsive ND438_11270 PF00501 AMP-binding enzyme ND438_11270 PF13193 AMP-binding enzyme C-terminal domain ND438_11275 PF13378 Enolase C-terminal domain-like ND438_11280 PF00378 Enoyl-CoA hydratase/isomerase ND438_11285 PF12697 Alpha/beta hydrolase family ND438_11290 PF16582 Middle domain of thiamine pyrophosphate ND438_11290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND438_11290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND438_11295 PF00425 chorismate binding enzyme ND438_11300 PF05957 Bacterial protein of unknown function (DUF883) ND438_11305 PF06496 Protein of unknown function (DUF1097) ND438_11310 PF00361 Proton-conducting membrane transporter ND438_11315 PF00361 Proton-conducting membrane transporter ND438_11320 PF00361 Proton-conducting membrane transporter ND438_11320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND438_11325 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND438_11330 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND438_11335 PF12838 4Fe-4S dicluster domain ND438_11340 PF00146 NADH dehydrogenase ND438_11345 PF01568 Molydopterin dinucleotide binding domain ND438_11345 PF00384 Molybdopterin oxidoreductase ND438_11345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND438_11345 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND438_11350 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND438_11350 PF10531 SLBB domain ND438_11350 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND438_11360 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND438_11360 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND438_11365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND438_11370 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND438_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_11375 PF03466 LysR substrate binding domain ND438_11380 PF00155 Aminotransferase class I and II ND438_11390 PF03600 Citrate transporter ND438_11390 PF02080 TrkA-C domain ND438_11400 PF03887 YfbU domain ND438_11405 PF04217 Protein of unknown function, DUF412 ND438_11410 PF00871 Acetokinase family ND438_11415 PF07085 DRTGG domain ND438_11415 PF01515 Phosphate acetyl/butaryl transferase ND438_11420 PF00356 Bacterial regulatory proteins, lacI family ND438_11420 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND438_11425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND438_11435 PF03611 PTS system sugar-specific permease component ND438_11440 PF00293 NUDIX domain ND438_11445 PF12850 Calcineurin-like phosphoesterase superfamily domain ND438_11460 PF00043 Glutathione S-transferase, C-terminal domain ND438_11460 PF02798 Glutathione S-transferase, N-terminal domain ND438_11465 PF08338 Domain of unknown function (DUF1731) ND438_11465 PF01370 NAD dependent epimerase/dehydratase family ND438_11470 PF00005 ABC transporter ND438_11475 PF00528 Binding-protein-dependent transport system inner membrane component ND438_11480 PF00528 Binding-protein-dependent transport system inner membrane component ND438_11485 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_11495 PF02441 Flavoprotein ND438_11500 PF00156 Phosphoribosyl transferase domain ND438_11505 PF02674 Colicin V production protein ND438_11510 PF05036 Sporulation related domain ND438_11515 PF02875 Mur ligase family, glutamate ligase domain ND438_11515 PF08245 Mur ligase middle domain ND438_11520 PF01039 Carboxyl transferase domain ND438_11520 PF17848 Acetyl-coA carboxylase zinc finger domain ND438_11525 PF09335 SNARE associated Golgi protein ND438_11530 PF01416 tRNA pseudouridine synthase ND438_11535 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND438_11535 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND438_11540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND438_11540 PF11890 Domain of unknown function (DUF3410) ND438_11540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND438_11560 PF00155 Aminotransferase class I and II ND438_11565 PF00578 AhpC/TSA family ND438_11595 PF02801 Beta-ketoacyl synthase, C-terminal domain ND438_11595 PF00109 Beta-ketoacyl synthase, N-terminal domain ND438_11600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND438_11600 PF01266 FAD dependent oxidoreductase ND438_11605 PF08891 YfcL protein ND438_11610 PF04315 Elongation factor P hydroxylase ND438_11615 PF01925 Sulfite exporter TauE/SafE ND438_11620 PF03411 Penicillin-insensitive murein endopeptidase ND438_11625 PF01264 Chorismate synthase ND438_11630 PF05175 Methyltransferase small domain ND438_11635 PF01713 Smr domain ND438_11640 PF00300 Histidine phosphatase superfamily (branch 1) ND438_11645 PF00378 Enoyl-CoA hydratase/isomerase ND438_11645 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND438_11645 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND438_11650 PF02803 Thiolase, C-terminal domain ND438_11650 PF00108 Thiolase, N-terminal domain ND438_11655 PF04175 Protein of unknown function (DUF406) ND438_11660 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND438_11665 PF04333 MlaA lipoprotein ND438_11670 PF03918 Cytochrome C biogenesis protein ND438_11675 PF03918 Cytochrome C biogenesis protein ND438_11680 PF08534 Redoxin ND438_11685 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND438_11685 PF01578 Cytochrome C assembly protein ND438_11690 PF03100 CcmE ND438_11695 PF04995 Heme exporter protein D (CcmD) ND438_11700 PF01578 Cytochrome C assembly protein ND438_11705 PF03379 CcmB protein ND438_11710 PF00005 ABC transporter ND438_11720 PF00589 Phage integrase family ND438_11720 PF14659 Phage integrase, N-terminal SAM-like domain ND438_11720 PF13356 Arm DNA-binding domain ND438_11725 PF01119 DNA mismatch repair protein, C-terminal domain ND438_11725 PF08676 MutL C terminal dimerisation domain ND438_11780 PF08274 PhnA Zinc-Ribbon ND438_11780 PF03831 PhnA domain ND438_11785 PF13406 Transglycosylase SLT domain ND438_11800 PF01292 Prokaryotic cytochrome b561 ND438_11805 PF00155 Aminotransferase class I and II ND438_11810 PF07350 Protein of unknown function (DUF1479) ND438_11815 PF07694 5TMR of 5TMR-LYT ND438_11815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_11815 PF06580 Histidine kinase ND438_11820 PF04397 LytTr DNA-binding domain ND438_11820 PF00072 Response regulator receiver domain ND438_11825 PF07690 Major Facilitator Superfamily ND438_11830 PF02685 Glucokinase ND438_11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_11840 PF03466 LysR substrate binding domain ND438_11850 PF01566 Natural resistance-associated macrophage protein ND438_11855 PF07662 Na+ dependent nucleoside transporter C-terminus ND438_11855 PF07670 Nucleoside recognition ND438_11855 PF01773 Na+ dependent nucleoside transporter N-terminus ND438_11890 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND438_11915 PF12843 Putative quorum-sensing-regulated virulence factor ND438_11920 PF12826 Helix-hairpin-helix motif ND438_11920 PF00533 BRCA1 C Terminus (BRCT) domain ND438_11920 PF03120 NAD-dependent DNA ligase OB-fold domain ND438_11920 PF01653 NAD-dependent DNA ligase adenylation domain ND438_11920 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND438_11925 PF04354 ZipA, C-terminal FtsZ-binding domain ND438_11935 PF00291 Pyridoxal-phosphate dependent enzyme ND438_11940 PF00381 PTS HPr component phosphorylation site ND438_11945 PF05524 PEP-utilising enzyme, N-terminal ND438_11945 PF00391 PEP-utilising enzyme, mobile domain ND438_11945 PF02896 PEP-utilising enzyme, TIM barrel domain ND438_11950 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND438_11955 PF00291 Pyridoxal-phosphate dependent enzyme ND438_11960 PF00005 ABC transporter ND438_11965 PF00528 Binding-protein-dependent transport system inner membrane component ND438_11970 PF00528 Binding-protein-dependent transport system inner membrane component ND438_11980 PF07690 Major Facilitator Superfamily ND438_11985 PF01418 Helix-turn-helix domain, rpiR family ND438_11985 PF01380 SIS domain ND438_11990 PF04074 YhcH/YjgK/YiaL ND438_11995 PF00480 ROK family ND438_12000 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND438_12005 PF00701 Dihydrodipicolinate synthetase family ND438_12010 PF04261 Dyp-type peroxidase family ND438_12015 PF06572 Protein of unknown function (DUF1131) ND438_12020 PF04076 Bacterial OB fold (BOF) protein ND438_12065 PF00583 Acetyltransferase (GNAT) family ND438_12070 PF01218 Coproporphyrinogen III oxidase ND438_12075 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND438_12080 PF03949 Malic enzyme, NAD binding domain ND438_12080 PF00390 Malic enzyme, N-terminal domain ND438_12080 PF01515 Phosphate acetyl/butaryl transferase ND438_12085 PF00293 NUDIX domain ND438_12090 PF03264 NapC/NirT cytochrome c family, N-terminal region ND438_12095 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND438_12100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND438_12100 PF00384 Molybdopterin oxidoreductase ND438_12100 PF01568 Molydopterin dinucleotide binding domain ND438_12100 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND438_12105 PF03927 NapD protein ND438_12110 PF00037 4Fe-4S binding domain ND438_12110 PF12800 4Fe-4S binding domain ND438_12110 PF13187 4Fe-4S dicluster domain ND438_12115 PF00196 Bacterial regulatory proteins, luxR family ND438_12115 PF00072 Response regulator receiver domain ND438_12125 PF00873 AcrB/AcrD/AcrF family ND438_12135 PF01817 Chorismate mutase type II ND438_12140 PF03960 ArsC family ND438_12145 PF01546 Peptidase family M20/M25/M40 ND438_12145 PF07687 Peptidase dimerisation domain ND438_12150 PF02557 D-alanyl-D-alanine carboxypeptidase ND438_12155 PF13980 Uncharacterised protein family (UPF0370) ND438_12160 PF02230 Phospholipase/Carboxylesterase ND438_12165 PF08351 Domain of unknown function (DUF1726) ND438_12165 PF17176 tRNA-binding domain ND438_12165 PF05127 Helicase ND438_12165 PF13718 GNAT acetyltransferase 2 ND438_12170 PF04284 Protein of unknown function (DUF441) ND438_12175 PF01259 SAICAR synthetase ND438_12180 PF06804 NlpB/DapX lipoprotein ND438_12185 PF00701 Dihydrodipicolinate synthetase family ND438_12190 PF01842 ACT domain ND438_12195 PF00578 AhpC/TSA family ND438_12200 PF01594 AI-2E family transporter ND438_12205 PF01435 Peptidase family M48 ND438_12205 PF07720 Tetratricopeptide repeat ND438_12210 PF03960 ArsC family ND438_12215 PF00308 Bacterial dnaA protein ND438_12220 PF00860 Permease family ND438_12230 PF00586 AIR synthase related protein, N-terminal domain ND438_12230 PF02769 AIR synthase related protein, C-terminal domain ND438_12235 PF00551 Formyl transferase ND438_12240 PF13302 Acetyltransferase (GNAT) domain ND438_12245 PF00005 ABC transporter ND438_12250 PF00528 Binding-protein-dependent transport system inner membrane component ND438_12255 PF00528 Binding-protein-dependent transport system inner membrane component ND438_12260 PF13089 Polyphosphate kinase N-terminal domain ND438_12260 PF17941 Polyphosphate kinase C-terminal domain 1 ND438_12260 PF13090 Polyphosphate kinase C-terminal domain 2 ND438_12260 PF02503 Polyphosphate kinase middle domain ND438_12265 PF02541 Ppx/GppA phosphatase family ND438_12275 PF03448 MgtE intracellular N domain ND438_12275 PF00571 CBS domain ND438_12275 PF01769 Divalent cation transporter ND438_12280 PF00012 Hsp70 protein ND438_12290 PF02753 Pili assembly chaperone PapD, C-terminal domain ND438_12290 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_12295 PF13953 PapC C-terminal domain ND438_12295 PF00577 Outer membrane usher protein ND438_12295 PF13954 PapC N-terminal domain ND438_12310 PF13533 Biotin-lipoyl like ND438_12315 PF00873 AcrB/AcrD/AcrF family ND438_12320 PF00873 AcrB/AcrD/AcrF family ND438_12325 PF07690 Major Facilitator Superfamily ND438_12330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_12330 PF00512 His Kinase A (phospho-acceptor) domain ND438_12330 PF00672 HAMP domain ND438_12335 PF00486 Transcriptional regulatory protein, C terminal ND438_12335 PF00072 Response regulator receiver domain ND438_12340 PF07411 Domain of unknown function (DUF1508) ND438_12345 PF16325 Peptidase family U32 C-terminal domain ND438_12345 PF01136 Peptidase family U32 ND438_12350 PF00781 Diacylglycerol kinase catalytic domain ND438_12365 PF08543 Phosphomethylpyrimidine kinase ND438_12380 PF00117 Glutamine amidotransferase class-I ND438_12380 PF02540 NAD synthase ND438_12380 PF00958 GMP synthase C terminal domain ND438_12385 PF00571 CBS domain ND438_12385 PF00478 IMP dehydrogenase / GMP reductase domain ND438_12390 PF13742 OB-fold nucleic acid binding domain ND438_12390 PF02601 Exonuclease VII, large subunit ND438_12395 PF07191 zinc-ribbons ND438_12400 PF01926 50S ribosome-binding GTPase ND438_12400 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND438_12405 PF13360 PQQ-like domain ND438_12410 PF09976 Tetratricopeptide repeat-like domain ND438_12415 PF03129 Anticodon binding domain ND438_12415 PF13393 Histidyl-tRNA synthetase ND438_12420 PF04551 GcpE protein ND438_12425 PF13464 Domain of unknown function (DUF4115) ND438_12435 PF04055 Radical SAM superfamily ND438_12440 PF00334 Nucleoside diphosphate kinase ND438_12450 PF00905 Penicillin binding protein transpeptidase domain ND438_12450 PF00912 Transglycosylase ND438_12450 PF06832 Penicillin-Binding Protein C-terminus Family ND438_12455 PF00207 Alpha-2-macroglobulin family ND438_12455 PF07703 Alpha-2-macroglobulin bait region domain ND438_12455 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND438_12455 PF17962 Bacterial macroglobulin domain 6 ND438_12455 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND438_12455 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND438_12455 PF07678 A-macroglobulin TED domain ND438_12455 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND438_12455 PF01835 MG2 domain ND438_12460 PF07179 SseB protein N-terminal domain ND438_12460 PF14581 SseB protein C-terminal domain ND438_12465 PF12404 Peptidase ND438_12465 PF00883 Cytosol aminopeptidase family, catalytic domain ND438_12470 PF04384 Iron-sulphur cluster assembly ND438_12475 PF00111 2Fe-2S iron-sulfur cluster binding domain ND438_12480 PF00012 Hsp70 protein ND438_12485 PF00226 DnaJ domain ND438_12485 PF07743 HSCB C-terminal oligomerisation domain ND438_12490 PF01521 Iron-sulphur cluster biosynthesis ND438_12495 PF01592 NifU-like N terminal domain ND438_12500 PF00266 Aminotransferase class-V ND438_12505 PF02082 Transcriptional regulator ND438_12510 PF00588 SpoU rRNA Methylase family ND438_12515 PF00459 Inositol monophosphatase family ND438_12520 PF03824 High-affinity nickel-transport protein ND438_12525 PF06226 Protein of unknown function (DUF1007) ND438_12530 PF00874 PRD domain ND438_12535 PF12832 MFS_1 like family ND438_12540 PF00464 Serine hydroxymethyltransferase ND438_12545 PF00042 Globin ND438_12545 PF00175 Oxidoreductase NAD-binding domain ND438_12545 PF00970 Oxidoreductase FAD-binding domain ND438_12550 PF14503 YhfZ C-terminal domain ND438_12550 PF14502 Helix-turn-helix domain ND438_12560 PF01168 Alanine racemase, N-terminal domain ND438_12565 PF02126 Phosphotriesterase family ND438_12570 PF10941 Protein of unknown function DUF2620 ND438_12575 PF10797 Protein of unknown function ND438_12580 PF00543 Nitrogen regulatory protein P-II ND438_12585 PF00795 Carbon-nitrogen hydrolase ND438_12585 PF02540 NAD synthase ND438_12590 PF00072 Response regulator receiver domain ND438_12590 PF00158 Sigma-54 interaction domain ND438_12595 PF13942 YfhG lipoprotein ND438_12600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_12600 PF00512 His Kinase A (phospho-acceptor) domain ND438_12610 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND438_12610 PF02769 AIR synthase related protein, C-terminal domain ND438_12610 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND438_12615 PF01464 Transglycosylase SLT domain ND438_12615 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_12620 PF14437 MafB19-like deaminase ND438_12630 PF00367 phosphotransferase system, EIIB ND438_12630 PF02378 Phosphotransferase system, EIIC ND438_12635 PF01380 SIS domain ND438_12640 PF01418 Helix-turn-helix domain, rpiR family ND438_12640 PF01380 SIS domain ND438_12645 PF12838 4Fe-4S dicluster domain ND438_12650 PF01648 4'-phosphopantetheinyl transferase superfamily ND438_12655 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND438_12660 PF11967 Recombination protein O N terminal ND438_12660 PF02565 Recombination protein O C terminal ND438_12665 PF07650 KH domain ND438_12665 PF01926 50S ribosome-binding GTPase ND438_12670 PF00035 Double-stranded RNA binding motif ND438_12670 PF14622 Ribonuclease-III-like ND438_12675 PF10502 Signal peptidase, peptidase S26 ND438_12680 PF00679 Elongation factor G C-terminus ND438_12680 PF00009 Elongation factor Tu GTP binding domain ND438_12680 PF03144 Elongation factor Tu domain 2 ND438_12680 PF06421 GTP-binding protein LepA C-terminus ND438_12690 PF03888 MucB/RseB N-terminal domain ND438_12690 PF17188 MucB/RseB C-terminal domain ND438_12695 PF03873 Anti sigma-E protein RseA, C-terminal domain ND438_12695 PF03872 Anti sigma-E protein RseA, N-terminal domain ND438_12700 PF04542 Sigma-70 region 2 ND438_12700 PF08281 Sigma-70, region 4 ND438_12705 PF00890 FAD binding domain ND438_12705 PF02910 Fumarate reductase flavoprotein C-term ND438_12710 PF05175 Methyltransferase small domain ND438_12715 PF00270 DEAD/DEAH box helicase ND438_12715 PF00271 Helicase conserved C-terminal domain ND438_12720 PF12796 Ankyrin repeats (3 copies) ND438_12730 PF01228 Glycine radical ND438_12735 PF03167 Uracil DNA glycosylase superfamily ND438_12740 PF01025 GrpE ND438_12745 PF01513 ATP-NAD kinase ND438_12750 PF02463 RecF/RecN/SMC N terminal domain ND438_12755 PF04355 SmpA / OmlA family ND438_12760 PF03658 RnfH family Ubiquitin ND438_12765 PF03364 Polyketide cyclase / dehydrase and lipid transport ND438_12770 PF01668 SmpB protein ND438_12780 PF13356 Arm DNA-binding domain ND438_12780 PF00589 Phage integrase family ND438_12810 PF01926 50S ribosome-binding GTPase ND438_12815 PF13280 WYL domain ND438_12815 PF08220 DeoR-like helix-turn-helix domain ND438_12840 PF06067 Domain of unknown function (DUF932) ND438_12845 PF03230 Antirestriction protein ND438_12850 PF04002 RadC-like JAB domain ND438_12855 PF06174 Protein of unknown function (DUF987) ND438_12860 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND438_12865 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND438_12905 PF02753 Pili assembly chaperone PapD, C-terminal domain ND438_12905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_12910 PF13953 PapC C-terminal domain ND438_12910 PF13954 PapC N-terminal domain ND438_12910 PF00577 Outer membrane usher protein ND438_12935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_12935 PF03466 LysR substrate binding domain ND438_12950 PF01527 Transposase ND438_12960 PF18413 Neuraminidase-like domain ND438_12960 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND438_12960 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND438_12960 PF18413 Neuraminidase-like domain ND438_12970 PF12255 Insecticide toxin TcdB middle/C-terminal region ND438_12970 PF03534 Salmonella virulence plasmid 65kDa B protein ND438_12970 PF12256 Insecticide toxin TcdB middle/N-terminal region ND438_12975 PF18807 Tripartite Tc toxins repeat ND438_12975 PF14431 YwqJ-like deaminase ND438_13005 PF00571 CBS domain ND438_13005 PF01380 SIS domain ND438_13010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND438_13010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND438_13020 PF02653 Branched-chain amino acid transport system / permease component ND438_13025 PF00005 ABC transporter ND438_13035 PF00561 alpha/beta hydrolase fold ND438_13040 PF03466 LysR substrate binding domain ND438_13040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_13045 PF02652 L-lactate permease ND438_13050 PF01070 FMN-dependent dehydrogenase ND438_13055 PF06039 Malate:quinone oxidoreductase (Mqo) ND438_13060 PF00313 'Cold-shock' DNA-binding domain ND438_13070 PF06711 Protein of unknown function (DUF1198) ND438_13075 PF09400 Protein of unknown function (DUF2002) ND438_13090 PF07972 NrdI Flavodoxin like ND438_13095 PF02867 Ribonucleotide reductase, barrel domain ND438_13095 PF00317 Ribonucleotide reductase, all-alpha domain ND438_13095 PF08343 Ribonucleotide reductase N-terminal ND438_13100 PF00268 Ribonucleotide reductase, small chain ND438_13105 PF00005 ABC transporter ND438_13105 PF00571 CBS domain ND438_13110 PF00528 Binding-protein-dependent transport system inner membrane component ND438_13115 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND438_13125 PF07690 Major Facilitator Superfamily ND438_13130 PF01047 MarR family ND438_13140 PF00529 HlyD membrane-fusion protein of T1SS ND438_13140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND438_13145 PF07690 Major Facilitator Superfamily ND438_13150 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND438_13150 PF00588 SpoU rRNA Methylase family ND438_13155 PF00085 Thioredoxin ND438_13160 PF03942 DTW domain ND438_13165 PF00583 Acetyltransferase (GNAT) family ND438_13165 PF13380 CoA binding domain ND438_13165 PF13607 Succinyl-CoA ligase like flavodoxin domain ND438_13170 PF13091 PLD-like domain ND438_13175 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND438_13205 PF00005 ABC transporter ND438_13205 PF09383 NIL domain ND438_13210 PF00528 Binding-protein-dependent transport system inner membrane component ND438_13215 PF03180 NLPA lipoprotein ND438_13220 PF16358 RcsF lipoprotein ND438_13225 PF01980 tRNA-methyltransferase O ND438_13225 PF18389 TrmO C-terminal domain ND438_13230 PF03129 Anticodon binding domain ND438_13230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND438_13230 PF04073 Aminoacyl-tRNA editing domain ND438_13235 PF04170 NlpE N-terminal domain ND438_13235 PF17185 NlpE C-terminal OB domain ND438_13240 PF00472 RF-1 domain ND438_13245 PF07152 YaeQ protein ND438_13250 PF06786 Uncharacterised protein family (UPF0253) ND438_13255 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND438_13260 PF00034 Cytochrome c ND438_13265 PF01171 PP-loop family ND438_13265 PF09179 TilS substrate binding domain ND438_13265 PF11734 TilS substrate C-terminal domain ND438_13270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND438_13285 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND438_13290 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND438_13290 PF01336 OB-fold nucleic acid binding domain ND438_13290 PF02811 PHP domain ND438_13290 PF14579 Helix-hairpin-helix motif ND438_13290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND438_13295 PF01351 Ribonuclease HII ND438_13300 PF02684 Lipid-A-disaccharide synthetase ND438_13305 PF00132 Bacterial transferase hexapeptide (six repeats) ND438_13305 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND438_13310 PF07977 FabA-like domain ND438_13315 PF00132 Bacterial transferase hexapeptide (six repeats) ND438_13315 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND438_13320 PF03938 Outer membrane protein (OmpH-like) ND438_13325 PF07244 Surface antigen variable number repeat ND438_13325 PF01103 Surface antigen ND438_13330 PF17820 PDZ domain ND438_13330 PF02163 Peptidase family M50 ND438_13340 PF01255 Putative undecaprenyl diphosphate synthase ND438_13345 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND438_13345 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND438_13345 PF13288 DXP reductoisomerase C-terminal domain ND438_13350 PF01765 Ribosome recycling factor ND438_13355 PF00696 Amino acid kinase family ND438_13360 PF00889 Elongation factor TS ND438_13365 PF00318 Ribosomal protein S2 ND438_13370 PF00557 Metallopeptidase family M24 ND438_13375 PF01842 ACT domain ND438_13375 PF08335 GlnD PII-uridylyltransferase ND438_13375 PF01966 HD domain ND438_13375 PF01909 Nucleotidyltransferase domain ND438_13380 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND438_13380 PF14602 Hexapeptide repeat of succinyl-transferase ND438_13380 PF00132 Bacterial transferase hexapeptide (six repeats) ND438_13385 PF11944 Protein of unknown function (DUF3461) ND438_13390 PF00258 Flavodoxin ND438_13395 PF00849 RNA pseudouridylate synthase ND438_13400 PF04287 tRNA pseudouridine synthase C ND438_13405 PF07348 Syd protein (SUKH-2) ND438_13410 PF14489 QueF-like protein ND438_13410 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND438_13415 PF11892 Domain of unknown function (DUF3412) ND438_13415 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND438_13415 PF03641 Possible lysine decarboxylase ND438_13420 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND438_13420 PF01367 5'-3' exonuclease, C-terminal SAM fold ND438_13425 PF18125 RlmM ferredoxin-like domain ND438_13425 PF01728 FtsJ-like methyltransferase ND438_13430 PF04241 Protein of unknown function (DUF423) ND438_13435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_13435 PF03466 LysR substrate binding domain ND438_13440 PF06004 Bacterial protein of unknown function (DUF903) ND438_13445 PF00266 Aminotransferase class-V ND438_13450 PF02657 Fe-S metabolism associated domain ND438_13455 PF00899 ThiF family ND438_13460 PF06725 3D domain ND438_13460 PF03562 MltA specific insert domain ND438_13480 PF11741 AMIN domain ND438_13480 PF01520 N-acetylmuramoyl-L-alanine amidase ND438_13485 PF00696 Amino acid kinase family ND438_13485 PF00583 Acetyltransferase (GNAT) family ND438_13490 PF13538 UvrD-like helicase C-terminal domain ND438_13495 PF12705 PD-(D/E)XK nuclease superfamily ND438_13495 PF00580 UvrD/REP helicase N-terminal domain ND438_13495 PF13361 UvrD-like helicase C-terminal domain ND438_13500 PF00675 Insulinase (Peptidase family M16) ND438_13500 PF05193 Peptidase M16 inactive domain ND438_13500 PF16187 Middle or third domain of peptidase_M16 ND438_13505 PF17946 RecC C-terminal domain ND438_13510 PF07963 Prokaryotic N-terminal methylation motif ND438_13510 PF12528 Type II secretion prepilin peptidase dependent protein C ND438_13525 PF07963 Prokaryotic N-terminal methylation motif ND438_13525 PF00114 Pilin (bacterial filament) ND438_13530 PF00303 Thymidylate synthase ND438_13535 PF01790 Prolipoprotein diacylglyceryl transferase ND438_13540 PF00391 PEP-utilising enzyme, mobile domain ND438_13540 PF02896 PEP-utilising enzyme, TIM barrel domain ND438_13540 PF01590 GAF domain ND438_13540 PF05524 PEP-utilising enzyme, N-terminal ND438_13545 PF00293 NUDIX domain ND438_13550 PF02976 DNA mismatch repair enzyme MutH ND438_13555 PF03741 Integral membrane protein TerC family ND438_13560 PF00248 Aldo/keto reductase family ND438_13565 PF07690 Major Facilitator Superfamily ND438_13570 PF01553 Acyltransferase ND438_13570 PF00501 AMP-binding enzyme ND438_13570 PF13193 AMP-binding enzyme C-terminal domain ND438_13580 PF00356 Bacterial regulatory proteins, lacI family ND438_13585 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND438_13585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND438_13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_13590 PF03466 LysR substrate binding domain ND438_13595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_13595 PF03466 LysR substrate binding domain ND438_13635 PF07963 Prokaryotic N-terminal methylation motif ND438_13635 PF11612 Type II secretion system (T2SS), protein J ND438_13640 PF07963 Prokaryotic N-terminal methylation motif ND438_13640 PF02501 Type II secretion system (T2SS), protein I ND438_13650 PF08334 Type II secretion system (T2SS), protein G ND438_13650 PF07963 Prokaryotic N-terminal methylation motif ND438_13655 PF00482 Type II secretion system (T2SS), protein F ND438_13660 PF00437 Type II/IV secretion system protein ND438_13665 PF00263 Bacterial type II and III secretion system protein ND438_13665 PF03958 Bacterial type II/III secretion system short domain ND438_13690 PF00005 ABC transporter ND438_13695 PF02405 Permease MlaE ND438_13705 PF00152 tRNA synthetases class II (D, K and N) ND438_13705 PF01336 OB-fold nucleic acid binding domain ND438_13715 PF02272 DHHA1 domain ND438_13715 PF17768 RecJ OB domain ND438_13715 PF01368 DHH family ND438_13720 PF10411 Disulfide bond isomerase protein N-terminus ND438_13720 PF13098 Thioredoxin-like domain ND438_13725 PF00589 Phage integrase family ND438_13725 PF02899 Phage integrase, N-terminal SAM-like domain ND438_13730 PF00258 Flavodoxin ND438_13735 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND438_13740 PF03937 Flavinator of succinate dehydrogenase ND438_13745 PF01571 Aminomethyltransferase folate-binding domain ND438_13750 PF03006 Haemolysin-III related ND438_13760 PF02347 Glycine cleavage system P-protein ND438_13765 PF01597 Glycine cleavage H-protein ND438_13770 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND438_13770 PF01571 Aminomethyltransferase folate-binding domain ND438_13775 PF01494 FAD binding domain ND438_13780 PF01494 FAD binding domain ND438_13785 PF05195 Aminopeptidase P, N-terminal domain ND438_13785 PF00557 Metallopeptidase family M24 ND438_13790 PF03695 Uncharacterised protein family (UPF0149) ND438_13795 PF05164 Cell division protein ZapA ND438_13805 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND438_13810 PF01842 ACT domain ND438_13810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND438_13810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND438_13815 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND438_13820 PF03466 LysR substrate binding domain ND438_13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_13825 PF04402 Protein of unknown function (DUF541) ND438_13830 PF01810 LysE type translocator ND438_13835 PF05552 Conserved TM helix ND438_13835 PF00924 Mechanosensitive ion channel ND438_13840 PF01116 Fructose-bisphosphate aldolase class-II ND438_13845 PF00162 Phosphoglycerate kinase ND438_13850 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND438_13850 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND438_13855 PF02780 Transketolase, C-terminal domain ND438_13855 PF02779 Transketolase, pyrimidine binding domain ND438_13855 PF00456 Transketolase, thiamine diphosphate binding domain ND438_13865 PF17810 Arginine decarboxylase helical bundle domain ND438_13865 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND438_13865 PF17944 Arginine decarboxylase C-terminal helical extension ND438_13870 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND438_13870 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND438_13870 PF02772 S-adenosylmethionine synthetase, central domain ND438_13880 PF04143 Sulphur transport ND438_13890 PF10263 SprT-like family ND438_13890 PF17283 SprT-like zinc ribbon domain ND438_13895 PF04231 Endonuclease I ND438_13900 PF04452 RNA methyltransferase ND438_13905 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND438_13905 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND438_13910 PF02622 Uncharacterized ACR, COG1678 ND438_13915 PF03652 Holliday junction resolvase ND438_13920 PF00795 Carbon-nitrogen hydrolase ND438_13925 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND438_13930 PF00437 Type II/IV secretion system protein ND438_13935 PF01168 Alanine racemase, N-terminal domain ND438_13940 PF03807 NADP oxidoreductase coenzyme F420-dependent ND438_13940 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND438_13945 PF02325 YGGT family ND438_13950 PF02594 Uncharacterised ACR, YggU family COG1872 ND438_13955 PF01725 Ham1 family ND438_13960 PF06969 HemN C-terminal domain ND438_13960 PF04055 Radical SAM superfamily ND438_13965 PF11101 Protein of unknown function (DUF2884) ND438_13970 PF04960 Glutaminase ND438_13975 PF04320 Protein with unknown function (DUF469) ND438_13980 PF02390 Putative methyltransferase ND438_13985 PF10576 Iron-sulfur binding domain of endonuclease III ND438_13985 PF00633 Helix-hairpin-helix motif ND438_13985 PF00730 HhH-GPD superfamily base excision DNA repair protein ND438_13985 PF14815 NUDIX domain ND438_13990 PF04362 Bacterial Fe(2+) trafficking ND438_13995 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND438_13995 PF01464 Transglycosylase SLT domain ND438_14040 PF00294 pfkB family carbohydrate kinase ND438_14045 PF01228 Glycine radical ND438_14045 PF02901 Pyruvate formate lyase-like ND438_14050 PF00871 Acetokinase family ND438_14055 PF01490 Transmembrane amino acid transporter protein ND438_14060 PF00291 Pyridoxal-phosphate dependent enzyme ND438_14065 PF00668 Condensation domain ND438_14065 PF00501 AMP-binding enzyme ND438_14065 PF13193 AMP-binding enzyme C-terminal domain ND438_14065 PF00550 Phosphopantetheine attachment site ND438_14065 PF00975 Thioesterase domain ND438_14075 PF00857 Isochorismatase family ND438_14075 PF00550 Phosphopantetheine attachment site ND438_14080 PF00501 AMP-binding enzyme ND438_14080 PF13193 AMP-binding enzyme C-terminal domain ND438_14085 PF00425 chorismate binding enzyme ND438_14090 PF01497 Periplasmic binding protein ND438_14095 PF05977 Transmembrane secretion effector ND438_14100 PF01032 FecCD transport family ND438_14105 PF01032 FecCD transport family ND438_14110 PF00005 ABC transporter ND438_14120 PF13193 AMP-binding enzyme C-terminal domain ND438_14120 PF00668 Condensation domain ND438_14120 PF00550 Phosphopantetheine attachment site ND438_14120 PF00975 Thioesterase domain ND438_14120 PF00501 AMP-binding enzyme ND438_14125 PF03621 MbtH-like protein ND438_14130 PF11806 Domain of unknown function (DUF3327) ND438_14130 PF00756 Putative esterase ND438_14135 PF07715 TonB-dependent Receptor Plug Domain ND438_14135 PF00593 TonB dependent receptor ND438_14140 PF08501 Shikimate dehydrogenase substrate binding domain ND438_14165 PF04972 BON domain ND438_14165 PF00263 Bacterial type II and III secretion system protein ND438_14165 PF13629 Pilus formation protein N terminal region ND438_14185 PF00437 Type II/IV secretion system protein ND438_14225 PF02472 Biopolymer transport protein ExbD/TolR ND438_14230 PF01618 MotA/TolQ/ExbB proton channel family ND438_14235 PF01053 Cys/Met metabolism PLP-dependent enzyme ND438_14240 PF09335 SNARE associated Golgi protein ND438_14245 PF06719 AraC-type transcriptional regulator N-terminus ND438_14245 PF12833 Helix-turn-helix domain ND438_14250 PF00465 Iron-containing alcohol dehydrogenase ND438_14255 PF00248 Aldo/keto reductase family ND438_14260 PF11842 Domain of unknown function (DUF3362) ND438_14260 PF04055 Radical SAM superfamily ND438_14260 PF08497 Radical SAM N-terminal ND438_14265 PF07731 Multicopper oxidase ND438_14265 PF07732 Multicopper oxidase ND438_14270 PF01553 Acyltransferase ND438_14275 PF03989 DNA gyrase C-terminal domain, beta-propeller ND438_14275 PF00521 DNA gyrase/topoisomerase IV, subunit A ND438_14280 PF02525 Flavodoxin-like fold ND438_14285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_14285 PF03466 LysR substrate binding domain ND438_14290 PF00204 DNA gyrase B ND438_14290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_14290 PF01751 Toprim domain ND438_14290 PF00986 DNA gyrase B subunit, carboxyl terminus ND438_14295 PF05728 Uncharacterised protein family (UPF0227) ND438_14300 PF00149 Calcineurin-like phosphoesterase ND438_14305 PF06853 Protein of unknown function (DUF1249) ND438_14310 PF00293 NUDIX domain ND438_14315 PF02321 Outer membrane efflux protein ND438_14320 PF06693 Protein of unknown function (DUF1190) ND438_14325 PF03738 Glutathionylspermidine synthase preATP-grasp ND438_14330 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND438_14335 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND438_14340 PF04380 Membrane fusogenic activity ND438_14350 PF01467 Cytidylyltransferase-like ND438_14350 PF00294 pfkB family carbohydrate kinase ND438_14355 PF08335 GlnD PII-uridylyltransferase ND438_14355 PF03710 Glutamate-ammonia ligase adenylyltransferase ND438_14360 PF01928 CYTH domain ND438_14365 PF08239 Bacterial SH3 domain ND438_14370 PF12627 Probable RNA and SrmB- binding site of polymerase A ND438_14370 PF01966 HD domain ND438_14370 PF01743 Poly A polymerase head domain ND438_14375 PF02673 Bacitracin resistance protein BacA ND438_14380 PF02152 Dihydroneopterin aldolase ND438_14385 PF02660 Glycerol-3-phosphate acyltransferase ND438_14390 PF00814 Glycoprotease family ND438_14395 PF01165 Ribosomal protein S21 ND438_14400 PF10410 DnaB-helicase binding domain of primase ND438_14400 PF08278 DNA primase DnaG DnaB-binding ND438_14400 PF08275 DNA primase catalytic core, N-terminal domain ND438_14400 PF01807 CHC2 zinc finger ND438_14405 PF04546 Sigma-70, non-essential region ND438_14405 PF00140 Sigma-70 factor, region 1.2 ND438_14405 PF04542 Sigma-70 region 2 ND438_14405 PF04539 Sigma-70 region 3 ND438_14405 PF04545 Sigma-70, region 4 ND438_14405 PF03979 Sigma-70 factor, region 1.1 ND438_14430 PF00106 short chain dehydrogenase ND438_14455 PF08241 Methyltransferase domain ND438_14460 PF00535 Glycosyl transferase family 2 ND438_14495 PF13018 Extended Signal Peptide of Type V secretion system ND438_14495 PF04829 Pre-toxin domain with VENN motif ND438_14495 PF13332 Hemagglutinin repeat ND438_14495 PF05860 haemagglutination activity domain ND438_14500 PF13018 Extended Signal Peptide of Type V secretion system ND438_14500 PF13332 Hemagglutinin repeat ND438_14500 PF05860 haemagglutination activity domain ND438_14500 PF04829 Pre-toxin domain with VENN motif ND438_14510 PF08479 POTRA domain, ShlB-type ND438_14510 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND438_14510 PF17287 POTRA domain ND438_14515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND438_14515 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_14520 PF05175 Methyltransferase small domain ND438_14530 PF01863 Protein of unknown function DUF45 ND438_14535 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND438_14540 PF03741 Integral membrane protein TerC family ND438_14545 PF00375 Sodium:dicarboxylate symporter family ND438_14550 PF10688 Bacterial inner membrane protein ND438_14555 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND438_14555 PF08666 SAF domain ND438_14560 PF01232 Mannitol dehydrogenase Rossmann domain ND438_14560 PF08125 Mannitol dehydrogenase C-terminal domain ND438_14565 PF02614 Glucuronate isomerase ND438_14570 PF07690 Major Facilitator Superfamily ND438_14575 PF00392 Bacterial regulatory proteins, gntR family ND438_14575 PF07729 FCD domain ND438_14585 PF09335 SNARE associated Golgi protein ND438_14590 PF13721 SecD export protein N-terminal TM region ND438_14600 PF05957 Bacterial protein of unknown function (DUF883) ND438_14605 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND438_14610 PF13997 YqjK-like protein ND438_14615 PF07681 DoxX ND438_14620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_14620 PF03466 LysR substrate binding domain ND438_14625 PF02678 Pirin ND438_14625 PF17954 Quercetinase C-terminal cupin domain ND438_14640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND438_14645 PF04348 LppC putative lipoprotein ND438_14650 PF02021 Uncharacterised protein family UPF0102 ND438_14655 PF13580 SIS domain ND438_14660 PF04972 BON domain ND438_14665 PF00912 Transglycosylase ND438_14675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_14675 PF00512 His Kinase A (phospho-acceptor) domain ND438_14675 PF01627 Hpt domain ND438_14675 PF00989 PAS fold ND438_14675 PF00072 Response regulator receiver domain ND438_14675 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND438_14680 PF04055 Radical SAM superfamily ND438_14680 PF16199 Radical_SAM C-terminal domain ND438_14685 PF04898 Glutamate synthase central domain ND438_14685 PF00310 Glutamine amidotransferases class-II ND438_14685 PF01645 Conserved region in glutamate synthase ND438_14685 PF01493 GXGXG motif ND438_14690 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND438_14690 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_14700 PF04386 Stringent starvation protein B ND438_14705 PF00043 Glutathione S-transferase, C-terminal domain ND438_14705 PF02798 Glutathione S-transferase, N-terminal domain ND438_14710 PF00380 Ribosomal protein S9/S16 ND438_14715 PF00572 Ribosomal protein L13 ND438_14720 PF03969 AFG1-like ATPase ND438_14725 PF06295 Protein of unknown function (DUF1043) ND438_14730 PF00595 PDZ domain ND438_14730 PF13180 PDZ domain ND438_14735 PF13180 PDZ domain ND438_14740 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND438_14745 PF01722 BolA-like protein ND438_14750 PF13466 STAS domain ND438_14755 PF05494 MlaC protein ND438_14760 PF02470 MlaD protein ND438_14765 PF02405 Permease MlaE ND438_14770 PF00005 ABC transporter ND438_14775 PF01699 Sodium/calcium exchanger protein ND438_14780 PF01380 SIS domain ND438_14780 PF00571 CBS domain ND438_14790 PF06835 Lipopolysaccharide-assembly, LptC-related ND438_14795 PF03968 OstA-like protein ND438_14800 PF00005 ABC transporter ND438_14800 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND438_14805 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND438_14805 PF04963 Sigma-54 factor, core binding domain ND438_14805 PF04552 Sigma-54, DNA binding domain ND438_14810 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND438_14815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND438_14820 PF03668 P-loop ATPase protein family ND438_14825 PF00381 PTS HPr component phosphorylation site ND438_14830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND438_14830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND438_14835 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND438_14835 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND438_14840 PF01042 Endoribonuclease L-PSP ND438_14845 PF00128 Alpha amylase, catalytic domain ND438_14845 PF11941 Domain of unknown function (DUF3459) ND438_14850 PF00367 phosphotransferase system, EIIB ND438_14850 PF02378 Phosphotransferase system, EIIC ND438_14855 PF00356 Bacterial regulatory proteins, lacI family ND438_14860 PF00689 Cation transporting ATPase, C-terminus ND438_14860 PF00690 Cation transporter/ATPase, N-terminus ND438_14870 PF01272 Transcription elongation factor, GreA/GreB, C-term ND438_14870 PF14760 Rnk N-terminus ND438_14875 PF07361 Cytochrome b562 ND438_14880 PF01523 Putative modulator of DNA gyrase ND438_14885 PF04751 Protein of unknown function (DUF615) ND438_14890 PF01337 Barstar (barnase inhibitor) ND438_14895 PF00545 ribonuclease ND438_14900 PF00171 Aldehyde dehydrogenase family ND438_14905 PF04632 Fusaric acid resistance protein family ND438_14910 PF13533 Biotin-lipoyl like ND438_14915 PF07869 Protein of unknown function (DUF1656) ND438_14920 PF03466 LysR substrate binding domain ND438_14920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_14925 PF01523 Putative modulator of DNA gyrase ND438_14930 PF00795 Carbon-nitrogen hydrolase ND438_14935 PF13502 AsmA-like C-terminal region ND438_14935 PF13116 Protein of unknown function ND438_14940 PF10150 Ribonuclease E/G family ND438_14940 PF00575 S1 RNA binding domain ND438_14945 PF02545 Maf-like protein ND438_14950 PF04093 rod shape-determining protein MreD ND438_14955 PF04085 rod shape-determining protein MreC ND438_14965 PF00563 EAL domain ND438_14965 PF17157 Gammaproteobacterial periplasmic sensor domain ND438_14965 PF00990 Diguanylate cyclase, GGDEF domain ND438_14970 PF00107 Zinc-binding dehydrogenase ND438_14970 PF08240 Alcohol dehydrogenase GroES-like domain ND438_14975 PF00174 Oxidoreductase molybdopterin binding domain ND438_14980 PF01794 Ferric reductase like transmembrane component ND438_14985 PF01220 Dehydroquinase class II ND438_14990 PF00364 Biotin-requiring enzyme ND438_14995 PF02785 Biotin carboxylase C-terminal domain ND438_14995 PF00289 Biotin carboxylase, N-terminal domain ND438_14995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND438_15000 PF06196 Protein of unknown function (DUF997) ND438_15005 PF00474 Sodium:solute symporter family ND438_15015 PF01207 Dihydrouridine synthase (Dus) ND438_15020 PF02954 Bacterial regulatory protein, Fis family ND438_15030 PF03279 Bacterial lipid A biosynthesis acyltransferase ND438_15035 PF00484 Carbonic anhydrase ND438_15040 PF04172 LrgB-like family ND438_15045 PF03788 LrgA family ND438_15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_15050 PF03466 LysR substrate binding domain ND438_15055 PF00999 Sodium/hydrogen exchanger family ND438_15060 PF00860 Permease family ND438_15070 PF00436 Single-strand binding protein family ND438_15075 PF17755 UvrA DNA-binding domain ND438_15075 PF17760 UvrA interaction domain ND438_15075 PF00005 ABC transporter ND438_15080 PF04237 YjbR ND438_15085 PF00155 Aminotransferase class I and II ND438_15090 PF00842 Alanine racemase, C-terminal domain ND438_15090 PF01168 Alanine racemase, N-terminal domain ND438_15095 PF00772 DnaB-like helicase N terminal domain ND438_15095 PF03796 DnaB-like helicase C terminal domain ND438_15100 PF08240 Alcohol dehydrogenase GroES-like domain ND438_15100 PF00107 Zinc-binding dehydrogenase ND438_15105 PF09583 Phage shock protein G (Phageshock_PspG) ND438_15110 PF01207 Dihydrouridine synthase (Dus) ND438_15115 PF01475 Ferric uptake regulator family ND438_15120 PF01726 LexA DNA binding domain ND438_15120 PF00717 Peptidase S24-like ND438_15125 PF01219 Prokaryotic diacylglycerol kinase ND438_15130 PF01553 Acyltransferase ND438_15135 PF01040 UbiA prenyltransferase family ND438_15140 PF04345 Chorismate lyase ND438_15145 PF07148 Maltose operon periplasmic protein precursor (MalM) ND438_15150 PF02264 LamB porin ND438_15155 PF00005 ABC transporter ND438_15155 PF17912 MalK OB fold domain ND438_15165 PF01547 Bacterial extracellular solute-binding protein ND438_15170 PF00528 Binding-protein-dependent transport system inner membrane component ND438_15170 PF14785 Maltose transport system permease protein MalF P2 domain ND438_15175 PF00528 Binding-protein-dependent transport system inner membrane component ND438_15180 PF06146 Phosphate-starvation-inducible E ND438_15185 PF00342 Phosphoglucose isomerase ND438_15190 PF00696 Amino acid kinase family ND438_15190 PF01842 ACT domain ND438_15195 PF08479 POTRA domain, ShlB-type ND438_15195 PF17287 POTRA domain ND438_15195 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND438_15200 PF13332 Hemagglutinin repeat ND438_15200 PF05860 haemagglutination activity domain ND438_15205 PF00872 Transposase, Mutator family ND438_15210 PF09134 Invasin, domain 3 ND438_15210 PF07979 Intimin C-type lectin domain ND438_15210 PF02369 Bacterial Ig-like domain (group 1) ND438_15210 PF11924 Inverse autotransporter, beta-domain ND438_15215 PF00872 Transposase, Mutator family ND438_15220 PF09134 Invasin, domain 3 ND438_15220 PF07979 Intimin C-type lectin domain ND438_15220 PF11924 Inverse autotransporter, beta-domain ND438_15220 PF02369 Bacterial Ig-like domain (group 1) ND438_15225 PF00872 Transposase, Mutator family ND438_15230 PF02369 Bacterial Ig-like domain (group 1) ND438_15230 PF11924 Inverse autotransporter, beta-domain ND438_15230 PF07979 Intimin C-type lectin domain ND438_15230 PF09134 Invasin, domain 3 ND438_15240 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND438_15250 PF01434 Peptidase family M41 ND438_15250 PF17862 AAA+ lid domain ND438_15250 PF00004 ATPase family associated with various cellular activities (AAA) ND438_15330 PF03466 LysR substrate binding domain ND438_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_15350 PF02310 B12 binding domain ND438_15350 PF02607 B12 binding domain ND438_15350 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND438_15350 PF02574 Homocysteine S-methyltransferase ND438_15350 PF00809 Pterin binding enzyme ND438_15355 PF01614 Bacterial transcriptional regulator ND438_15355 PF09339 IclR helix-turn-helix domain ND438_15360 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND438_15365 PF00463 Isocitrate lyase family ND438_15370 PF01274 Malate synthase ND438_15375 PF04204 Homoserine O-succinyltransferase ND438_15410 PF01808 AICARFT/IMPCHase bienzyme ND438_15410 PF02142 MGS-like domain ND438_15415 PF02844 Phosphoribosylglycinamide synthetase, N domain ND438_15415 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND438_15415 PF02843 Phosphoribosylglycinamide synthetase, C domain ND438_15420 PF07356 Protein of unknown function (DUF1481) ND438_15425 PF00216 Bacterial DNA-binding protein ND438_15430 PF04222 Protein of unknown function (DUF416) ND438_15435 PF04493 Endonuclease V ND438_15440 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND438_15445 PF00293 NUDIX domain ND438_15445 PF09297 NADH pyrophosphatase zinc ribbon domain ND438_15450 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND438_15455 PF01964 Radical SAM ThiC family ND438_15455 PF13667 ThiC-associated domain ND438_15460 PF02581 Thiamine monophosphate synthase ND438_15465 PF00899 ThiF family ND438_15470 PF02597 ThiS family ND438_15475 PF05690 Thiazole biosynthesis protein ThiG ND438_15480 PF04055 Radical SAM superfamily ND438_15480 PF06968 Biotin and Thiamin Synthesis associated domain ND438_15485 PF00623 RNA polymerase Rpb1, domain 2 ND438_15485 PF04997 RNA polymerase Rpb1, domain 1 ND438_15485 PF05000 RNA polymerase Rpb1, domain 4 ND438_15485 PF04998 RNA polymerase Rpb1, domain 5 ND438_15485 PF04983 RNA polymerase Rpb1, domain 3 ND438_15490 PF04563 RNA polymerase beta subunit ND438_15490 PF04561 RNA polymerase Rpb2, domain 2 ND438_15490 PF10385 RNA polymerase beta subunit external 1 domain ND438_15490 PF00562 RNA polymerase Rpb2, domain 6 ND438_15490 PF04560 RNA polymerase Rpb2, domain 7 ND438_15490 PF04565 RNA polymerase Rpb2, domain 3 ND438_15495 PF00542 Ribosomal protein L7/L12 C-terminal domain ND438_15495 PF16320 Ribosomal protein L7/L12 dimerisation domain ND438_15500 PF00466 Ribosomal protein L10 ND438_15505 PF00687 Ribosomal protein L1p/L10e family ND438_15510 PF03946 Ribosomal protein L11, N-terminal domain ND438_15510 PF00298 Ribosomal protein L11, RNA binding domain ND438_15515 PF00467 KOW motif ND438_15515 PF02357 Transcription termination factor nusG ND438_15520 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND438_15525 PF00009 Elongation factor Tu GTP binding domain ND438_15525 PF03144 Elongation factor Tu domain 2 ND438_15525 PF03143 Elongation factor Tu C-terminal domain ND438_15550 PF00485 Phosphoribulokinase / Uridine kinase family ND438_15555 PF08279 HTH domain ND438_15555 PF02237 Biotin protein ligase C terminal domain ND438_15555 PF03099 Biotin/lipoate A/B protein ligase family ND438_15560 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND438_15560 PF01565 FAD binding domain ND438_15585 PF12724 Flavodoxin domain ND438_15590 PF02386 Cation transport protein ND438_15595 PF09186 Domain of unknown function (DUF1949) ND438_15595 PF01205 Uncharacterized protein family UPF0029 ND438_15600 PF00557 Metallopeptidase family M24 ND438_15605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND438_15605 PF00378 Enoyl-CoA hydratase/isomerase ND438_15605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND438_15610 PF02803 Thiolase, C-terminal domain ND438_15610 PF00108 Thiolase, N-terminal domain ND438_15615 PF00970 Oxidoreductase FAD-binding domain ND438_15615 PF00175 Oxidoreductase NAD-binding domain ND438_15620 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND438_15630 PF02357 Transcription termination factor nusG ND438_15635 PF00490 Delta-aminolevulinic acid dehydratase ND438_15640 PF01026 TatD related DNase ND438_15645 PF00902 Sec-independent protein translocase protein (TatC) ND438_15655 PF02416 mttA/Hcf106 family ND438_15660 PF03109 ABC1 family ND438_15665 PF02036 SCP-2 sterol transfer family ND438_15670 PF01209 ubiE/COQ5 methyltransferase family ND438_15675 PF02646 RmuC family ND438_15680 PF09335 SNARE associated Golgi protein ND438_15685 PF13722 5TM C-terminal transporter carbon starvation CstA ND438_15685 PF02554 Carbon starvation protein CstA ND438_15695 PF01048 Phosphorylase superfamily ND438_15700 PF01738 Dienelactone hydrolase family ND438_15705 PF08267 Cobalamin-independent synthase, N-terminal domain ND438_15705 PF01717 Cobalamin-independent synthase, Catalytic domain ND438_15710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_15710 PF03466 LysR substrate binding domain ND438_15715 PF00892 EamA-like transporter family ND438_15725 PF03009 Glycerophosphoryl diester phosphodiesterase family ND438_15730 PF00005 ABC transporter ND438_15730 PF17912 MalK OB fold domain ND438_15735 PF00528 Binding-protein-dependent transport system inner membrane component ND438_15740 PF00528 Binding-protein-dependent transport system inner membrane component ND438_15745 PF13416 Bacterial extracellular solute-binding protein ND438_15780 PF00005 ABC transporter ND438_15785 PF00005 ABC transporter ND438_15785 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND438_15790 PF02653 Branched-chain amino acid transport system / permease component ND438_15790 PF11862 Domain of unknown function (DUF3382) ND438_15795 PF02653 Branched-chain amino acid transport system / permease component ND438_15800 PF13458 Periplasmic binding protein ND438_15805 PF12568 Acetyltransferase (GNAT) domain, PanZ ND438_15810 PF02595 Glycerate kinase family ND438_15815 PF02447 GntP family permease ND438_15820 PF13556 PucR C-terminal helix-turn-helix domain ND438_15820 PF17853 GGDEF-like domain ND438_15820 PF05651 Putative sugar diacid recognition ND438_15825 PF04542 Sigma-70 region 2 ND438_15825 PF04545 Sigma-70, region 4 ND438_15825 PF00140 Sigma-70 factor, region 1.2 ND438_15830 PF18075 FtsX extracellular domain ND438_15830 PF02687 FtsX-like permease family ND438_15835 PF00005 ABC transporter ND438_15840 PF00448 SRP54-type protein, GTPase domain ND438_15840 PF02881 SRP54-type protein, helical bundle domain ND438_15840 PF00448 SRP54-type protein, GTPase domain ND438_15840 PF02881 SRP54-type protein, helical bundle domain ND438_15850 PF06611 Protein of unknown function (DUF1145) ND438_15865 PF07947 YhhN family ND438_15870 PF00403 Heavy-metal-associated domain ND438_15875 PF01206 Sulfurtransferase TusA ND438_15880 PF02592 Putative vitamin uptake transporter ND438_15885 PF08786 DcrB ND438_15890 PF02754 Cysteine-rich domain ND438_15890 PF13183 4Fe-4S dicluster domain ND438_15895 PF00890 FAD binding domain ND438_15900 PF01266 FAD dependent oxidoreductase ND438_15900 PF04324 BFD-like [2Fe-2S] binding domain ND438_15910 PF07690 Major Facilitator Superfamily ND438_15915 PF03009 Glycerophosphoryl diester phosphodiesterase family ND438_15925 PF12146 Serine aminopeptidase, S33 ND438_15930 PF01810 LysE type translocator ND438_15935 PF00270 DEAD/DEAH box helicase ND438_15935 PF00570 HRDC domain ND438_15935 PF16124 RecQ zinc-binding ND438_15935 PF00271 Helicase conserved C-terminal domain ND438_15935 PF09382 RQC domain ND438_15940 PF02253 Phospholipase A1 ND438_15945 PF03061 Thioesterase superfamily ND438_15950 PF00892 EamA-like transporter family ND438_15955 PF01544 CorA-like Mg2+ transporter protein ND438_15965 PF09370 Phosphoenolpyruvate hydrolase-like ND438_15980 PF13361 UvrD-like helicase C-terminal domain ND438_15980 PF00580 UvrD/REP helicase N-terminal domain ND438_15985 PF13419 Haloacid dehalogenase-like hydrolase ND438_15990 PF00589 Phage integrase family ND438_15990 PF02899 Phage integrase, N-terminal SAM-like domain ND438_15995 PF04340 Protein of unknown function, DUF484 ND438_16000 PF01678 Diaminopimelate epimerase ND438_16005 PF13627 Prokaryotic lipoprotein-attachment site ND438_16010 PF01491 Frataxin-like domain ND438_16015 PF12633 Adenylate cyclase NT domain ND438_16015 PF01295 Adenylate cyclase, class-I ND438_16020 PF03900 Porphobilinogen deaminase, C-terminal domain ND438_16020 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND438_16025 PF02602 Uroporphyrinogen-III synthase HemD ND438_16030 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND438_16035 PF07719 Tetratricopeptide repeat ND438_16035 PF07219 HemY protein N-terminus ND438_16065 PF00324 Amino acid permease ND438_16070 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND438_16075 PF06899 WzyE protein, O-antigen assembly polymerase ND438_16080 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND438_16085 PF01943 Polysaccharide biosynthesis protein ND438_16090 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND438_16100 PF00483 Nucleotidyl transferase ND438_16105 PF16363 GDP-mannose 4,6 dehydratase ND438_16110 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND438_16110 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND438_16110 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND438_16115 PF02350 UDP-N-acetylglucosamine 2-epimerase ND438_16120 PF02706 Chain length determinant protein ND438_16125 PF00953 Glycosyl transferase family 4 ND438_16130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND438_16130 PF07498 Rho termination factor, N-terminal domain ND438_16130 PF07497 Rho termination factor, RNA-binding domain ND438_16135 PF00085 Thioredoxin ND438_16140 PF00270 DEAD/DEAH box helicase ND438_16140 PF00271 Helicase conserved C-terminal domain ND438_16145 PF02541 Ppx/GppA phosphatase family ND438_16150 PF00580 UvrD/REP helicase N-terminal domain ND438_16150 PF13361 UvrD-like helicase C-terminal domain ND438_16160 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND438_16160 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND438_16165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_16165 PF03466 LysR substrate binding domain ND438_16170 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND438_16170 PF18416 N-acetylglucosamine binding protein domain 2 ND438_16175 PF00291 Pyridoxal-phosphate dependent enzyme ND438_16175 PF00585 C-terminal regulatory domain of Threonine dehydratase ND438_16180 PF00920 Dehydratase family ND438_16185 PF01063 Amino-transferase class IV ND438_16195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND438_16195 PF00205 Thiamine pyrophosphate enzyme, central domain ND438_16195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND438_16200 PF08046 IlvGEDA operon leader peptide ND438_16205 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND438_16205 PF01078 Magnesium chelatase, subunit ChlI ND438_16210 PF04219 Protein of unknown function, DUF ND438_16215 PF03466 LysR substrate binding domain ND438_16215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_16265 PF01177 Asp/Glu/Hydantoin racemase ND438_16270 PF00593 TonB dependent receptor ND438_16270 PF07715 TonB-dependent Receptor Plug Domain ND438_16275 PF05958 tRNA (Uracil-5-)-methyltransferase ND438_16280 PF07226 Protein of unknown function (DUF1422) ND438_16285 PF00440 Bacterial regulatory proteins, tetR family ND438_16290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND438_16290 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_16295 PF03466 LysR substrate binding domain ND438_16295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_16300 PF00462 Glutaredoxin ND438_16300 PF08534 Redoxin ND438_16305 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND438_16305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND438_16325 PF00529 HlyD membrane-fusion protein of T1SS ND438_16330 PF00664 ABC transporter transmembrane region ND438_16330 PF00005 ABC transporter ND438_16340 PF07715 TonB-dependent Receptor Plug Domain ND438_16340 PF00593 TonB dependent receptor ND438_16345 PF14698 Argininosuccinate lyase C-terminal ND438_16345 PF00206 Lyase ND438_16350 PF00764 Arginosuccinate synthase ND438_16355 PF00696 Amino acid kinase family ND438_16360 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND438_16360 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND438_16365 PF07687 Peptidase dimerisation domain ND438_16365 PF01546 Peptidase family M20/M25/M40 ND438_16370 PF00311 Phosphoenolpyruvate carboxylase ND438_16380 PF02219 Methylenetetrahydrofolate reductase ND438_16400 PF03447 Homoserine dehydrogenase, NAD binding domain ND438_16400 PF00696 Amino acid kinase family ND438_16400 PF00742 Homoserine dehydrogenase ND438_16405 PF01053 Cys/Met metabolism PLP-dependent enzyme ND438_16410 PF01340 Met Apo-repressor, MetJ ND438_16415 PF01197 Ribosomal protein L31 ND438_16420 PF00270 DEAD/DEAH box helicase ND438_16420 PF18074 Primosomal protein N C-terminal domain ND438_16420 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND438_16420 PF17764 3′ DNA-binding domain (3′BD) ND438_16420 PF00271 Helicase conserved C-terminal domain ND438_16425 PF00356 Bacterial regulatory proteins, lacI family ND438_16430 PF05036 Sporulation related domain ND438_16435 PF00227 Proteasome subunit ND438_16440 PF00004 ATPase family associated with various cellular activities (AAA) ND438_16440 PF10431 C-terminal, D2-small domain, of ClpB protein ND438_16440 PF07724 AAA domain (Cdc48 subfamily) ND438_16445 PF01040 UbiA prenyltransferase family ND438_16450 PF03737 Aldolase/RraA ND438_16455 PF06005 Cell division protein ZapB ND438_16460 PF00230 Major intrinsic protein ND438_16465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND438_16465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND438_16470 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND438_16475 PF07690 Major Facilitator Superfamily ND438_16480 PF00970 Oxidoreductase FAD-binding domain ND438_16480 PF00175 Oxidoreductase NAD-binding domain ND438_16485 PF05656 Protein of unknown function (DUF805) ND438_16490 PF07305 Protein of unknown function (DUF1454) ND438_16495 PF00121 Triosephosphate isomerase ND438_16505 PF00365 Phosphofructokinase ND438_16510 PF01545 Cation efflux family ND438_16510 PF16916 Dimerisation domain of Zinc Transporter ND438_16515 PF07813 LTXXQ motif family protein ND438_16520 PF00486 Transcriptional regulatory protein, C terminal ND438_16520 PF00072 Response regulator receiver domain ND438_16525 PF16527 Two-component sensor protein CpxA, periplasmic domain ND438_16525 PF00512 His Kinase A (phospho-acceptor) domain ND438_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_16525 PF00672 HAMP domain ND438_16530 PF00588 SpoU rRNA Methylase family ND438_16535 PF06426 Serine acetyltransferase, N-terminal ND438_16535 PF00132 Bacterial transferase hexapeptide (six repeats) ND438_16540 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND438_16540 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND438_16545 PF02556 Preprotein translocase subunit SecB ND438_16550 PF00462 Glutaredoxin ND438_16555 PF00581 Rhodanese-like domain ND438_16560 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND438_16560 PF01676 Metalloenzyme superfamily ND438_16565 PF01551 Peptidase family M23 ND438_16570 PF04748 Divergent polysaccharide deacetylase ND438_16575 PF00107 Zinc-binding dehydrogenase ND438_16575 PF08240 Alcohol dehydrogenase GroES-like domain ND438_16580 PF00155 Aminotransferase class I and II ND438_16585 PF01370 NAD dependent epimerase/dehydratase family ND438_16590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND438_16595 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND438_16600 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND438_16605 PF00535 Glycosyl transferase family 2 ND438_16610 PF01467 Cytidylyltransferase-like ND438_16615 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND438_16615 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND438_16615 PF06827 Zinc finger found in FPG and IleRS ND438_16620 PF00471 Ribosomal protein L33 ND438_16625 PF00830 Ribosomal L28 family ND438_16630 PF04002 RadC-like JAB domain ND438_16635 PF02441 Flavoprotein ND438_16635 PF04127 DNA / pantothenate metabolism flavoprotein ND438_16640 PF00692 dUTPase ND438_16645 PF00440 Bacterial regulatory proteins, tetR family ND438_16650 PF00156 Phosphoribosyl transferase domain ND438_16655 PF03725 3' exoribonuclease family, domain 2 ND438_16655 PF01138 3' exoribonuclease family, domain 1 ND438_16660 PF08340 Domain of unknown function (DUF1732) ND438_16660 PF03755 YicC-like family, N-terminal region ND438_16670 PF03466 LysR substrate binding domain ND438_16670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND438_16675 PF00563 EAL domain ND438_16675 PF13426 PAS domain ND438_16675 PF00990 Diguanylate cyclase, GGDEF domain ND438_16680 PF00378 Enoyl-CoA hydratase/isomerase ND438_16685 PF07670 Nucleoside recognition ND438_16685 PF07662 Na+ dependent nucleoside transporter C-terminus ND438_16685 PF01773 Na+ dependent nucleoside transporter N-terminus ND438_16695 PF03458 UPF0126 domain ND438_16700 PF03120 NAD-dependent DNA ligase OB-fold domain ND438_16700 PF01653 NAD-dependent DNA ligase adenylation domain ND438_16705 PF00625 Guanylate kinase ND438_16710 PF01192 RNA polymerase Rpb6 ND438_16715 PF13291 ACT domain ND438_16715 PF04607 Region found in RelA / SpoT proteins ND438_16715 PF02824 TGS domain ND438_16720 PF00588 SpoU rRNA Methylase family ND438_16720 PF12105 SpoU, rRNA methylase, C-terminal ND438_16725 PF17191 RecG wedge domain ND438_16725 PF00271 Helicase conserved C-terminal domain ND438_16725 PF00270 DEAD/DEAH box helicase ND438_16730 PF03616 Sodium/glutamate symporter ND438_16735 PF00860 Permease family ND438_16740 PF05170 AsmA family ND438_16745 PF09500 Putative thioesterase (yiiD_Cterm) ND438_16745 PF00583 Acetyltransferase (GNAT) family ND438_16750 PF02580 D-Tyr-tRNA(Tyr) deacylase ND438_16755 PF03631 Virulence factor BrkB ND438_16760 PF13419 Haloacid dehalogenase-like hydrolase ND438_16765 PF00679 Elongation factor G C-terminus ND438_16765 PF03144 Elongation factor Tu domain 2 ND438_16765 PF00009 Elongation factor Tu GTP binding domain ND438_16770 PF00120 Glutamine synthetase, catalytic domain ND438_16770 PF03951 Glutamine synthetase, beta-Grasp domain ND438_16775 PF00512 His Kinase A (phospho-acceptor) domain ND438_16775 PF00989 PAS fold ND438_16775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND438_16780 PF00072 Response regulator receiver domain ND438_16780 PF02954 Bacterial regulatory protein, Fis family ND438_16780 PF00158 Sigma-54 interaction domain ND438_16785 PF04055 Radical SAM superfamily ND438_16785 PF06969 HemN C-terminal domain ND438_16790 PF04220 Der GTPase activator (YihI) ND438_16795 PF01926 50S ribosome-binding GTPase ND438_16800 PF00476 DNA polymerase family A ND438_16800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND438_16800 PF01367 5'-3' exonuclease, C-terminal SAM fold ND438_16800 PF01612 3'-5' exonuclease ND438_16805 PF01323 DSBA-like thioredoxin domain ND438_16810 PF01636 Phosphotransferase enzyme family ND438_16815 PF06288 Protein of unknown function (DUF1040) ND438_16820 PF12804 MobA-like NTP transferase domain ND438_16825 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND438_16850 PF07729 FCD domain ND438_16850 PF00392 Bacterial regulatory proteins, gntR family ND438_16855 PF00356 Bacterial regulatory proteins, lacI family ND438_16860 PF00294 pfkB family carbohydrate kinase ND438_16865 PF13407 Periplasmic binding protein domain ND438_16870 PF02653 Branched-chain amino acid transport system / permease component ND438_16875 PF00005 ABC transporter ND438_16880 PF05025 RbsD / FucU transport protein family ND438_16885 PF02705 K+ potassium transporter ND438_16890 PF12592 Protein of unknown function (DUF3763) ND438_16890 PF07728 AAA domain (dynein-related subfamily) ND438_16890 PF17868 AAA lid domain ND438_16895 PF05762 VWA domain containing CoxE-like protein ND438_16905 PF03590 Aspartate-ammonia ligase ND438_16910 PF01037 Lrp/AsnC ligand binding domain ND438_16915 PF00258 Flavodoxin ND438_16920 PF01134 Glucose inhibited division protein A ND438_16920 PF13932 GidA associated domain ND438_16925 PF02527 rRNA small subunit methyltransferase G ND438_16930 PF03899 ATP synthase I chain ND438_16935 PF00119 ATP synthase A chain ND438_16940 PF00137 ATP synthase subunit C ND438_16945 PF00430 ATP synthase B/B' CF(0) ND438_16950 PF00213 ATP synthase delta (OSCP) subunit ND438_16955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND438_16955 PF00306 ATP synthase alpha/beta chain, C terminal domain ND438_16955 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND438_16960 PF00231 ATP synthase ND438_16965 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND438_16965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND438_16970 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND438_16970 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND438_16975 PF12804 MobA-like NTP transferase domain ND438_16975 PF00132 Bacterial transferase hexapeptide (six repeats) ND438_16980 PF01380 SIS domain ND438_16985 PF12849 PBP superfamily domain ND438_16990 PF00528 Binding-protein-dependent transport system inner membrane component ND438_16995 PF00528 Binding-protein-dependent transport system inner membrane component ND438_17000 PF00005 ABC transporter ND438_17005 PF01895 PhoU domain ND438_17010 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND438_17015 PF00528 Binding-protein-dependent transport system inner membrane component ND438_17020 PF00528 Binding-protein-dependent transport system inner membrane component ND438_17025 PF00860 Permease family ND438_17030 PF00672 HAMP domain ND438_17030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND438_17030 PF02203 Tar ligand binding domain homologue ND438_17040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND438_17040 PF02753 Pili assembly chaperone PapD, C-terminal domain ND438_17045 PF00577 Outer membrane usher protein ND438_17045 PF13953 PapC C-terminal domain ND438_17045 PF13954 PapC N-terminal domain ND438_17055 PF01926 50S ribosome-binding GTPase ND438_17055 PF12631 MnmE helical domain ND438_17055 PF10396 GTP-binding protein TrmE N-terminus ND438_17060 PF02096 60Kd inner membrane protein ND438_17060 PF14849 YidC periplasmic domain ND438_17065 PF01809 Putative membrane protein insertion efficiency factor ND438_17070 PF00825 Ribonuclease P ND438_17075 PF00468 Ribosomal protein L34 ND438_17080 PF00465 Iron-containing alcohol dehydrogenase ND438_17100 PF00239 Resolvase, N terminal domain ND438_17100 PF02796 Helix-turn-helix domain of resolvase ND438_17185 PF00437 Type II/IV secretion system protein ND438_17200 PF01464 Transglycosylase SLT domain ND438_17210 PF04917 Bacterial shufflon protein, N-terminal constant region ND438_17225 PF00437 Type II/IV secretion system protein ND438_17235 PF08401 Domain of unknown function (DUF1738) ND438_17235 PF18818 Metallopeptidase superfamily domain ND438_17235 PF13362 Toprim domain ND438_17340 PF18821 Large polyvalent protein-associated domain 7 ND438_17340 PF03432 Relaxase/Mobilisation nuclease domain ND438_17360 PF01381 Helix-turn-helix ND438_17425 PF06406 StbA protein ND438_17430 PF13614 AAA domain ND438_17445 PF13610 DDE domain ND438_17460 PF00756 Putative esterase ND438_17470 PF08240 Alcohol dehydrogenase GroES-like domain ND438_17470 PF00107 Zinc-binding dehydrogenase ND438_17475 PF02583 Metal-sensitive transcriptional repressor