locus-tag class description LNQ46_000005 PF00308 Bacterial dnaA protein LNQ46_000005 PF08299 Bacterial dnaA protein helix-turn-helix LNQ46_000005 PF11638 DnaA N-terminal domain LNQ46_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain LNQ46_000010 PF02767 DNA polymerase III beta subunit, central domain LNQ46_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain LNQ46_000015 PF02463 RecF/RecN/SMC N terminal domain LNQ46_000020 PF01751 Toprim domain LNQ46_000020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_000020 PF00986 DNA gyrase B subunit, carboxyl terminus LNQ46_000020 PF00204 DNA gyrase B LNQ46_000020 PF18053 DNA gyrase B subunit insert domain LNQ46_000030 PF12566 Protein of unknown function (DUF3748) LNQ46_000030 PF07676 WD40-like Beta Propeller Repeat LNQ46_000035 PF07119 Protein of unknown function (DUF1375) LNQ46_000040 PF00011 Hsp20/alpha crystallin family LNQ46_000045 PF00011 Hsp20/alpha crystallin family LNQ46_000050 PF02080 TrkA-C domain LNQ46_000050 PF06826 Predicted Permease Membrane Region LNQ46_000055 PF00155 Aminotransferase class I and II LNQ46_000060 PF13488 Glycine zipper LNQ46_000060 PF00691 OmpA family LNQ46_000080 PF03352 Methyladenine glycosylase LNQ46_000090 PF02091 Glycyl-tRNA synthetase alpha subunit LNQ46_000095 PF05746 DALR anticodon binding domain LNQ46_000095 PF02092 Glycyl-tRNA synthetase beta subunit LNQ46_000100 PF11254 Protein of unknown function (DUF3053) LNQ46_000130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ46_000130 PF02378 Phosphotransferase system, EIIC LNQ46_000130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ46_000135 PF01232 Mannitol dehydrogenase Rossmann domain LNQ46_000135 PF08125 Mannitol dehydrogenase C-terminal domain LNQ46_000140 PF05068 Mannitol repressor LNQ46_000145 PF10928 Protein of unknown function (DUF2810) LNQ46_000150 PF03473 MOSC domain LNQ46_000150 PF03475 3-alpha domain LNQ46_000155 PF02203 Tar ligand binding domain homologue LNQ46_000155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ46_000155 PF00672 HAMP domain LNQ46_000160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNQ46_000160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNQ46_000165 PF02634 FdhD/NarQ family LNQ46_000175 PF09163 Formate dehydrogenase N, transmembrane LNQ46_000175 PF13247 4Fe-4S dicluster domain LNQ46_000180 PF01292 Prokaryotic cytochrome b561 LNQ46_000185 PF04216 Protein involved in formate dehydrogenase formation LNQ46_000190 PF03841 L-seryl-tRNA selenium transferase LNQ46_000190 PF12390 Selenocysteine synthase N terminal LNQ46_000195 PF00009 Elongation factor Tu GTP binding domain LNQ46_000195 PF09107 Elongation factor SelB, winged helix LNQ46_000195 PF03144 Elongation factor Tu domain 2 LNQ46_000195 PF09106 Elongation factor SelB, winged helix LNQ46_000200 PF01427 D-ala-D-ala dipeptidase LNQ46_000205 PF07690 Major Facilitator Superfamily LNQ46_000210 PF01757 Acyltransferase family LNQ46_000245 PF01175 Urocanase Rossmann-like domain LNQ46_000245 PF17391 Urocanase N-terminal domain LNQ46_000245 PF17392 Urocanase C-terminal domain LNQ46_000250 PF00221 Aromatic amino acid lyase LNQ46_000255 PF00324 Amino acid permease LNQ46_000265 PF12146 Serine aminopeptidase, S33 LNQ46_000270 PF00884 Sulfatase LNQ46_000270 PF08019 Phosphoethanolamine transferase EptA/EptB LNQ46_000275 PF00196 Bacterial regulatory proteins, luxR family LNQ46_000275 PF00072 Response regulator receiver domain LNQ46_000280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_000280 PF07730 Histidine kinase LNQ46_000280 PF05231 MASE1 LNQ46_000285 PF07690 Major Facilitator Superfamily LNQ46_000295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ46_000300 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_000305 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ46_000305 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_000310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ46_000310 PF00005 ABC transporter LNQ46_000315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ46_000315 PF00005 ABC transporter LNQ46_000320 PF11658 Cellulose biosynthesis protein BcsG LNQ46_000325 PF11120 Cellulose biosynthesis protein BcsF LNQ46_000330 PF10995 Cellulose biosynthesis GIL LNQ46_000340 PF06564 Cellulose biosynthesis protein BcsQ LNQ46_000345 PF07238 PilZ domain LNQ46_000345 PF00535 Glycosyl transferase family 2 LNQ46_000345 PF03552 Cellulose synthase LNQ46_000350 PF03170 Bacterial cellulose synthase subunit LNQ46_000355 PF01270 Glycosyl hydrolases family 8 LNQ46_000360 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LNQ46_000365 PF00672 HAMP domain LNQ46_000365 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_000365 PF17154 Gammaproteobacterial periplasmic sensor domain LNQ46_000365 PF00563 EAL domain LNQ46_000370 PF00375 Sodium:dicarboxylate symporter family LNQ46_000375 PF05193 Peptidase M16 inactive domain LNQ46_000375 PF00675 Insulinase (Peptidase family M16) LNQ46_000380 PF00294 pfkB family carbohydrate kinase LNQ46_000385 PF01361 Tautomerase enzyme LNQ46_000390 PF00563 EAL domain LNQ46_000395 PF02611 CDP-diacylglycerol pyrophosphatase LNQ46_000400 PF03631 Virulence factor BrkB LNQ46_000405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_000405 PF03466 LysR substrate binding domain LNQ46_000410 PF00375 Sodium:dicarboxylate symporter family LNQ46_000415 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ46_000445 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_000445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ46_000450 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LNQ46_000455 PF01432 Peptidase family M3 LNQ46_000460 PF04445 Putative SAM-dependent methyltransferase LNQ46_000465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LNQ46_000465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LNQ46_000470 PF00582 Universal stress protein family LNQ46_000475 PF10625 Universal stress protein B (UspB) LNQ46_000480 PF01384 Phosphate transporter family LNQ46_000490 PF01810 LysE type translocator LNQ46_000495 PF00583 Acetyltransferase (GNAT) family LNQ46_000500 PF17954 Quercetinase C-terminal cupin domain LNQ46_000500 PF02678 Pirin LNQ46_000505 PF00356 Bacterial regulatory proteins, lacI family LNQ46_000505 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ46_000510 PF02447 GntP family permease LNQ46_000515 PF01202 Shikimate kinase LNQ46_000520 PF01914 MarC family integral membrane protein LNQ46_000525 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ46_000525 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ46_000530 PF07694 5TMR of 5TMR-LYT LNQ46_000530 PF06580 Histidine kinase LNQ46_000535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNQ46_000535 PF02806 Alpha amylase, C-terminal all-beta domain LNQ46_000535 PF00128 Alpha amylase, catalytic domain LNQ46_000540 PF18390 Glycogen debranching enzyme C-terminal domain LNQ46_000540 PF00128 Alpha amylase, catalytic domain LNQ46_000540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNQ46_000545 PF00483 Nucleotidyl transferase LNQ46_000550 PF08323 Starch synthase catalytic domain LNQ46_000550 PF00534 Glycosyl transferases group 1 LNQ46_000555 PF00343 Carbohydrate phosphorylase LNQ46_000560 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LNQ46_000560 PF01266 FAD dependent oxidoreductase LNQ46_000565 PF00455 DeoR C terminal sensor domain LNQ46_000565 PF08220 DeoR-like helix-turn-helix domain LNQ46_000570 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LNQ46_000570 PF01694 Rhomboid family LNQ46_000575 PF00581 Rhodanese-like domain LNQ46_000580 PF17874 MalT-like TPR region LNQ46_000580 PF00196 Bacterial regulatory proteins, luxR family LNQ46_000585 PF00343 Carbohydrate phosphorylase LNQ46_000590 PF02446 4-alpha-glucanotransferase LNQ46_000595 PF01106 NifU-like domain LNQ46_000595 PF01521 Iron-sulphur cluster biosynthesis LNQ46_000600 PF00156 Phosphoribosyl transferase domain LNQ46_000605 PF00561 alpha/beta hydrolase fold LNQ46_000615 PF09012 FeoC like transcriptional regulator LNQ46_000620 PF02421 Ferrous iron transport protein B LNQ46_000620 PF17910 FeoB cytosolic helical domain LNQ46_000620 PF07664 Ferrous iron transport protein B C terminus LNQ46_000620 PF07670 Nucleoside recognition LNQ46_000625 PF04023 FeoA domain LNQ46_000630 PF17674 HHH domain LNQ46_000630 PF09371 Tex-like protein N-terminal domain LNQ46_000630 PF16921 Tex protein YqgF-like domain LNQ46_000630 PF00575 S1 RNA binding domain LNQ46_000655 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ46_000655 PF03449 Transcription elongation factor, N-terminal LNQ46_000660 PF00072 Response regulator receiver domain LNQ46_000660 PF00486 Transcriptional regulatory protein, C terminal LNQ46_000665 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_000665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_000665 PF00672 HAMP domain LNQ46_000670 PF01293 Phosphoenolpyruvate carboxykinase LNQ46_000675 PF01430 Hsp33 protein LNQ46_000680 PF01479 S4 domain LNQ46_000685 PF13419 Haloacid dehalogenase-like hydrolase LNQ46_000690 PF07095 Intracellular growth attenuator protein IgaA LNQ46_000695 PF00293 NUDIX domain LNQ46_000700 PF00912 Transglycosylase LNQ46_000700 PF00905 Penicillin binding protein transpeptidase domain LNQ46_000700 PF17092 Penicillin-binding protein OB-like domain LNQ46_000725 PF03958 Bacterial type II/III secretion system short domain LNQ46_000725 PF00263 Bacterial type II and III secretion system protein LNQ46_000730 PF01202 Shikimate kinase LNQ46_000735 PF01761 3-dehydroquinate synthase LNQ46_000740 PF05036 Sporulation related domain LNQ46_000745 PF02086 D12 class N6 adenine-specific DNA methyltransferase LNQ46_000750 PF00834 Ribulose-phosphate 3 epimerase family LNQ46_000755 PF13419 Haloacid dehalogenase-like hydrolase LNQ46_000760 PF00579 tRNA synthetases class I (W and Y) LNQ46_000765 PF10414 Sirohaem synthase dimerisation region LNQ46_000765 PF14824 Sirohaem biosynthesis protein central LNQ46_000765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ46_000770 PF01226 Formate/nitrite transporter LNQ46_000775 PF13806 Rieske-like [2Fe-2S] domain LNQ46_000780 PF04324 BFD-like [2Fe-2S] binding domain LNQ46_000780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNQ46_000780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNQ46_000780 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_000780 PF18267 Rubredoxin NAD+ reductase C-terminal domain LNQ46_000785 PF07969 Amidohydrolase family LNQ46_000790 PF07690 Major Facilitator Superfamily LNQ46_000805 PF00356 Bacterial regulatory proteins, lacI family LNQ46_000810 PF11975 Family 4 glycosyl hydrolase C-terminal domain LNQ46_000810 PF02056 Family 4 glycosyl hydrolase LNQ46_000815 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LNQ46_000820 PF00117 Glutamine amidotransferase class-I LNQ46_000825 PF00202 Aminotransferase class-III LNQ46_000830 PF12805 FUSC-like inner membrane protein yccS LNQ46_000835 PF13545 Crp-like helix-turn-helix domain LNQ46_000835 PF00027 Cyclic nucleotide-binding domain LNQ46_000840 PF02566 OsmC-like protein LNQ46_000860 PF00156 Phosphoribosyl transferase domain LNQ46_000865 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_000870 PF00485 Phosphoribulokinase / Uridine kinase family LNQ46_000875 PF06794 Uncharacterised protein family (UPF0270) LNQ46_000880 PF00561 alpha/beta hydrolase fold LNQ46_000885 PF01810 LysE type translocator LNQ46_000890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ46_000895 PF00535 Glycosyl transferase family 2 LNQ46_000900 PF00005 ABC transporter LNQ46_000900 PF12848 ABC transporter LNQ46_000905 PF02525 Flavodoxin-like fold LNQ46_000910 PF00999 Sodium/hydrogen exchanger family LNQ46_000910 PF02254 TrkA-N domain LNQ46_000915 PF09526 Probable metal-binding protein (DUF2387) LNQ46_000920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ46_000925 PF04102 SlyX LNQ46_000930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ46_000930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LNQ46_000935 PF13309 HTH domain LNQ46_000935 PF08348 YheO-like PAS domain LNQ46_000940 PF02635 DsrE/DsrF-like family LNQ46_000945 PF02635 DsrE/DsrF-like family LNQ46_000950 PF04077 DsrH like protein LNQ46_000955 PF00164 Ribosomal protein S12/S23 LNQ46_000960 PF00177 Ribosomal protein S7p/S5e LNQ46_000965 PF00679 Elongation factor G C-terminus LNQ46_000965 PF14492 Elongation Factor G, domain II LNQ46_000965 PF03144 Elongation factor Tu domain 2 LNQ46_000965 PF03764 Elongation factor G, domain IV LNQ46_000965 PF00009 Elongation factor Tu GTP binding domain LNQ46_000970 PF03144 Elongation factor Tu domain 2 LNQ46_000970 PF00009 Elongation factor Tu GTP binding domain LNQ46_000970 PF03143 Elongation factor Tu C-terminal domain LNQ46_000975 PF04324 BFD-like [2Fe-2S] binding domain LNQ46_000980 PF00210 Ferritin-like domain LNQ46_000985 PF00338 Ribosomal protein S10p/S20e LNQ46_000990 PF00297 Ribosomal protein L3 LNQ46_000995 PF00573 Ribosomal protein L4/L1 family LNQ46_001000 PF00276 Ribosomal protein L23 LNQ46_001005 PF03947 Ribosomal Proteins L2, C-terminal domain LNQ46_001005 PF00181 Ribosomal Proteins L2, RNA binding domain LNQ46_001010 PF00203 Ribosomal protein S19 LNQ46_001015 PF00237 Ribosomal protein L22p/L17e LNQ46_001020 PF07650 KH domain LNQ46_001020 PF00189 Ribosomal protein S3, C-terminal domain LNQ46_001025 PF00252 Ribosomal protein L16p/L10e LNQ46_001030 PF00831 Ribosomal L29 protein LNQ46_001035 PF00366 Ribosomal protein S17 LNQ46_001040 PF00238 Ribosomal protein L14p/L23e LNQ46_001045 PF00467 KOW motif LNQ46_001045 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LNQ46_001050 PF00673 ribosomal L5P family C-terminus LNQ46_001050 PF00281 Ribosomal protein L5 LNQ46_001055 PF00253 Ribosomal protein S14p/S29e LNQ46_001060 PF00410 Ribosomal protein S8 LNQ46_001065 PF00347 Ribosomal protein L6 LNQ46_001070 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LNQ46_001075 PF03719 Ribosomal protein S5, C-terminal domain LNQ46_001075 PF00333 Ribosomal protein S5, N-terminal domain LNQ46_001080 PF00327 Ribosomal protein L30p/L7e LNQ46_001085 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LNQ46_001090 PF00344 SecY translocase LNQ46_001095 PF00444 Ribosomal protein L36 LNQ46_001100 PF00416 Ribosomal protein S13/S18 LNQ46_001105 PF00411 Ribosomal protein S11 LNQ46_001110 PF01479 S4 domain LNQ46_001110 PF00163 Ribosomal protein S4/S9 N-terminal domain LNQ46_001115 PF01000 RNA polymerase Rpb3/RpoA insert domain LNQ46_001115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LNQ46_001115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LNQ46_001120 PF01196 Ribosomal protein L17 LNQ46_001125 PF13411 MerR HTH family regulatory protein LNQ46_001130 PF03889 Alternative ribosome-rescue factor A LNQ46_001135 PF01741 Large-conductance mechanosensitive channel, MscL LNQ46_001140 PF02080 TrkA-C domain LNQ46_001140 PF02254 TrkA-N domain LNQ46_001145 PF01029 NusB family LNQ46_001145 PF01189 16S rRNA methyltransferase RsmB/F LNQ46_001150 PF00551 Formyl transferase LNQ46_001150 PF02911 Formyl transferase, C-terminal domain LNQ46_001155 PF01327 Polypeptide deformylase LNQ46_001160 PF02481 DNA recombination-mediator protein A LNQ46_001160 PF17782 DprA winged helix domain LNQ46_001165 PF04361 Protein of unknown function (DUF494) LNQ46_001170 PF01396 Topoisomerase DNA binding C4 zinc finger LNQ46_001175 PF01300 Telomere recombination LNQ46_001180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LNQ46_001180 PF01488 Shikimate / quinate 5-dehydrogenase LNQ46_001180 PF08501 Shikimate dehydrogenase substrate binding domain LNQ46_001185 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ46_001210 PF01565 FAD binding domain LNQ46_001210 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LNQ46_001215 PF08279 HTH domain LNQ46_001215 PF03099 Biotin/lipoate A/B protein ligase family LNQ46_001215 PF02237 Biotin protein ligase C terminal domain LNQ46_001220 PF00485 Phosphoribulokinase / Uridine kinase family LNQ46_001245 PF03144 Elongation factor Tu domain 2 LNQ46_001245 PF03143 Elongation factor Tu C-terminal domain LNQ46_001245 PF00009 Elongation factor Tu GTP binding domain LNQ46_001250 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LNQ46_001255 PF02357 Transcription termination factor nusG LNQ46_001255 PF00467 KOW motif LNQ46_001260 PF03946 Ribosomal protein L11, N-terminal domain LNQ46_001260 PF00298 Ribosomal protein L11, RNA binding domain LNQ46_001265 PF00687 Ribosomal protein L1p/L10e family LNQ46_001270 PF00466 Ribosomal protein L10 LNQ46_001275 PF16320 Ribosomal protein L7/L12 dimerisation domain LNQ46_001275 PF00542 Ribosomal protein L7/L12 C-terminal domain LNQ46_001280 PF04563 RNA polymerase beta subunit LNQ46_001280 PF04565 RNA polymerase Rpb2, domain 3 LNQ46_001280 PF10385 RNA polymerase beta subunit external 1 domain LNQ46_001280 PF00562 RNA polymerase Rpb2, domain 6 LNQ46_001280 PF04560 RNA polymerase Rpb2, domain 7 LNQ46_001280 PF04561 RNA polymerase Rpb2, domain 2 LNQ46_001285 PF04998 RNA polymerase Rpb1, domain 5 LNQ46_001285 PF04997 RNA polymerase Rpb1, domain 1 LNQ46_001285 PF04983 RNA polymerase Rpb1, domain 3 LNQ46_001285 PF00623 RNA polymerase Rpb1, domain 2 LNQ46_001285 PF05000 RNA polymerase Rpb1, domain 4 LNQ46_001290 PF04055 Radical SAM superfamily LNQ46_001290 PF06968 Biotin and Thiamin Synthesis associated domain LNQ46_001295 PF05690 Thiazole biosynthesis protein ThiG LNQ46_001300 PF02597 ThiS family LNQ46_001305 PF00899 ThiF family LNQ46_001310 PF02581 Thiamine monophosphate synthase LNQ46_001315 PF13667 ThiC-associated domain LNQ46_001315 PF01964 Radical SAM ThiC family LNQ46_001320 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LNQ46_001325 PF09297 NADH pyrophosphatase zinc ribbon domain LNQ46_001325 PF00293 NUDIX domain LNQ46_001330 PF01208 Uroporphyrinogen decarboxylase (URO-D) LNQ46_001335 PF04493 Endonuclease V LNQ46_001340 PF04222 Protein of unknown function (DUF416) LNQ46_001345 PF00216 Bacterial DNA-binding protein LNQ46_001350 PF07356 Protein of unknown function (DUF1481) LNQ46_001355 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LNQ46_001355 PF02843 Phosphoribosylglycinamide synthetase, C domain LNQ46_001355 PF02844 Phosphoribosylglycinamide synthetase, N domain LNQ46_001360 PF01808 AICARFT/IMPCHase bienzyme LNQ46_001360 PF02142 MGS-like domain LNQ46_001395 PF04204 Homoserine O-succinyltransferase LNQ46_001400 PF01274 Malate synthase LNQ46_001405 PF00463 Isocitrate lyase family LNQ46_001410 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LNQ46_001415 PF01614 Bacterial transcriptional regulator LNQ46_001415 PF09339 IclR helix-turn-helix domain LNQ46_001420 PF02607 B12 binding domain LNQ46_001420 PF02310 B12 binding domain LNQ46_001420 PF02965 Vitamin B12 dependent methionine synthase, activation domain LNQ46_001420 PF00809 Pterin binding enzyme LNQ46_001420 PF02574 Homocysteine S-methyltransferase LNQ46_001435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_001435 PF03466 LysR substrate binding domain LNQ46_001515 PF00004 ATPase family associated with various cellular activities (AAA) LNQ46_001515 PF16450 Proteasomal ATPase OB C-terminal domain LNQ46_001515 PF17758 Proteasomal ATPase OB N-terminal domain LNQ46_001525 PF04488 Glycosyltransferase sugar-binding region containing DXD motif LNQ46_001530 PF13332 Hemagglutinin repeat LNQ46_001530 PF05860 haemagglutination activity domain LNQ46_001535 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ46_001535 PF08479 POTRA domain, ShlB-type LNQ46_001535 PF17287 POTRA domain LNQ46_001540 PF01842 ACT domain LNQ46_001540 PF00696 Amino acid kinase family LNQ46_001545 PF00342 Phosphoglucose isomerase LNQ46_001550 PF06146 Phosphate-starvation-inducible E LNQ46_001555 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_001560 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_001560 PF14785 Maltose transport system permease protein MalF P2 domain LNQ46_001565 PF01547 Bacterial extracellular solute-binding protein LNQ46_001575 PF17912 MalK OB fold domain LNQ46_001575 PF00005 ABC transporter LNQ46_001580 PF02264 LamB porin LNQ46_001585 PF07148 Maltose operon periplasmic protein precursor (MalM) LNQ46_001590 PF04345 Chorismate lyase LNQ46_001595 PF01040 UbiA prenyltransferase family LNQ46_001600 PF01553 Acyltransferase LNQ46_001605 PF01219 Prokaryotic diacylglycerol kinase LNQ46_001610 PF01726 LexA DNA binding domain LNQ46_001610 PF00717 Peptidase S24-like LNQ46_001615 PF01475 Ferric uptake regulator family LNQ46_001620 PF01207 Dihydrouridine synthase (Dus) LNQ46_001625 PF09583 Phage shock protein G (Phageshock_PspG) LNQ46_001630 PF00107 Zinc-binding dehydrogenase LNQ46_001630 PF08240 Alcohol dehydrogenase GroES-like domain LNQ46_001635 PF00772 DnaB-like helicase N terminal domain LNQ46_001635 PF03796 DnaB-like helicase C terminal domain LNQ46_001640 PF00842 Alanine racemase, C-terminal domain LNQ46_001640 PF01168 Alanine racemase, N-terminal domain LNQ46_001645 PF00155 Aminotransferase class I and II LNQ46_001650 PF04237 YjbR LNQ46_001655 PF17755 UvrA DNA-binding domain LNQ46_001655 PF17760 UvrA interaction domain LNQ46_001655 PF00005 ABC transporter LNQ46_001660 PF00436 Single-strand binding protein family LNQ46_001670 PF00860 Permease family LNQ46_001675 PF00999 Sodium/hydrogen exchanger family LNQ46_001680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_001680 PF03466 LysR substrate binding domain LNQ46_001685 PF03788 LrgA family LNQ46_001690 PF04172 LrgB-like family LNQ46_001695 PF00484 Carbonic anhydrase LNQ46_001700 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ46_001710 PF02954 Bacterial regulatory protein, Fis family LNQ46_001715 PF01207 Dihydrouridine synthase (Dus) LNQ46_001725 PF00474 Sodium:solute symporter family LNQ46_001730 PF06196 Protein of unknown function (DUF997) LNQ46_001735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNQ46_001735 PF02785 Biotin carboxylase C-terminal domain LNQ46_001735 PF00289 Biotin carboxylase, N-terminal domain LNQ46_001740 PF00364 Biotin-requiring enzyme LNQ46_001745 PF01220 Dehydroquinase class II LNQ46_001750 PF01794 Ferric reductase like transmembrane component LNQ46_001755 PF00174 Oxidoreductase molybdopterin binding domain LNQ46_001760 PF08240 Alcohol dehydrogenase GroES-like domain LNQ46_001760 PF00107 Zinc-binding dehydrogenase LNQ46_001765 PF17157 Gammaproteobacterial periplasmic sensor domain LNQ46_001765 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_001765 PF00563 EAL domain LNQ46_001775 PF04085 rod shape-determining protein MreC LNQ46_001780 PF04093 rod shape-determining protein MreD LNQ46_001785 PF02545 Maf-like protein LNQ46_001790 PF10150 Ribonuclease E/G family LNQ46_001790 PF00575 S1 RNA binding domain LNQ46_001795 PF13502 AsmA-like C-terminal region LNQ46_001795 PF13116 Protein of unknown function LNQ46_001800 PF00795 Carbon-nitrogen hydrolase LNQ46_001805 PF01523 Putative modulator of DNA gyrase LNQ46_001810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_001810 PF03466 LysR substrate binding domain LNQ46_001815 PF07869 Protein of unknown function (DUF1656) LNQ46_001820 PF13533 Biotin-lipoyl like LNQ46_001825 PF04632 Fusaric acid resistance protein family LNQ46_001830 PF00171 Aldehyde dehydrogenase family LNQ46_001835 PF00545 ribonuclease LNQ46_001840 PF01337 Barstar (barnase inhibitor) LNQ46_001845 PF04751 Protein of unknown function (DUF615) LNQ46_001850 PF01523 Putative modulator of DNA gyrase LNQ46_001855 PF07361 Cytochrome b562 LNQ46_001860 PF14760 Rnk N-terminus LNQ46_001860 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ46_001870 PF00690 Cation transporter/ATPase, N-terminus LNQ46_001870 PF00689 Cation transporting ATPase, C-terminus LNQ46_001875 PF00356 Bacterial regulatory proteins, lacI family LNQ46_001880 PF00367 phosphotransferase system, EIIB LNQ46_001880 PF02378 Phosphotransferase system, EIIC LNQ46_001885 PF00128 Alpha amylase, catalytic domain LNQ46_001885 PF11941 Domain of unknown function (DUF3459) LNQ46_001890 PF01042 Endoribonuclease L-PSP LNQ46_001895 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LNQ46_001895 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LNQ46_001900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNQ46_001900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNQ46_001905 PF00381 PTS HPr component phosphorylation site LNQ46_001910 PF03668 P-loop ATPase protein family LNQ46_001915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ46_001920 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LNQ46_001925 PF04552 Sigma-54, DNA binding domain LNQ46_001925 PF04963 Sigma-54 factor, core binding domain LNQ46_001925 PF00309 Sigma-54 factor, Activator interacting domain (AID) LNQ46_001930 PF12399 Branched-chain amino acid ATP-binding cassette transporter LNQ46_001930 PF00005 ABC transporter LNQ46_001935 PF03968 OstA-like protein LNQ46_001940 PF06835 Lipopolysaccharide-assembly, LptC-related LNQ46_001950 PF00571 CBS domain LNQ46_001950 PF01380 SIS domain LNQ46_001955 PF01699 Sodium/calcium exchanger protein LNQ46_001960 PF00005 ABC transporter LNQ46_001965 PF02405 Permease MlaE LNQ46_001970 PF02470 MlaD protein LNQ46_001975 PF05494 MlaC protein LNQ46_001980 PF13466 STAS domain LNQ46_001985 PF01722 BolA-like protein LNQ46_001990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNQ46_001995 PF13180 PDZ domain LNQ46_002000 PF13180 PDZ domain LNQ46_002000 PF00595 PDZ domain LNQ46_002005 PF06295 Protein of unknown function (DUF1043) LNQ46_002010 PF03969 AFG1-like ATPase LNQ46_002015 PF00572 Ribosomal protein L13 LNQ46_002020 PF00380 Ribosomal protein S9/S16 LNQ46_002025 PF00043 Glutathione S-transferase, C-terminal domain LNQ46_002025 PF02798 Glutathione S-transferase, N-terminal domain LNQ46_002030 PF04386 Stringent starvation protein B LNQ46_002040 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_002040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNQ46_002045 PF00310 Glutamine amidotransferases class-II LNQ46_002045 PF01645 Conserved region in glutamate synthase LNQ46_002045 PF01493 GXGXG motif LNQ46_002045 PF04898 Glutamate synthase central domain LNQ46_002050 PF04055 Radical SAM superfamily LNQ46_002050 PF16199 Radical_SAM C-terminal domain LNQ46_002055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_002055 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_002055 PF18415 Histidine kinase receptor ArcB trans-membrane domain LNQ46_002055 PF01627 Hpt domain LNQ46_002055 PF00989 PAS fold LNQ46_002055 PF00072 Response regulator receiver domain LNQ46_002065 PF00912 Transglycosylase LNQ46_002070 PF04972 BON domain LNQ46_002075 PF13580 SIS domain LNQ46_002080 PF02021 Uncharacterised protein family UPF0102 LNQ46_002085 PF04348 LppC putative lipoprotein LNQ46_002090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ46_002105 PF02678 Pirin LNQ46_002105 PF17954 Quercetinase C-terminal cupin domain LNQ46_002110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_002110 PF03466 LysR substrate binding domain LNQ46_002115 PF07681 DoxX LNQ46_002120 PF13997 YqjK-like protein LNQ46_002125 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LNQ46_002130 PF05957 Bacterial protein of unknown function (DUF883) LNQ46_002140 PF13721 SecD export protein N-terminal TM region LNQ46_002145 PF09335 SNARE associated Golgi protein LNQ46_002155 PF00392 Bacterial regulatory proteins, gntR family LNQ46_002155 PF07729 FCD domain LNQ46_002160 PF07690 Major Facilitator Superfamily LNQ46_002165 PF02614 Glucuronate isomerase LNQ46_002170 PF01232 Mannitol dehydrogenase Rossmann domain LNQ46_002170 PF08125 Mannitol dehydrogenase C-terminal domain LNQ46_002175 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LNQ46_002175 PF08666 SAF domain LNQ46_002180 PF10688 Bacterial inner membrane protein LNQ46_002185 PF00375 Sodium:dicarboxylate symporter family LNQ46_002190 PF03741 Integral membrane protein TerC family LNQ46_002195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ46_002200 PF01863 Protein of unknown function DUF45 LNQ46_002210 PF05175 Methyltransferase small domain LNQ46_002215 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_002215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNQ46_002220 PF08479 POTRA domain, ShlB-type LNQ46_002220 PF17287 POTRA domain LNQ46_002220 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ46_002225 PF13018 Extended Signal Peptide of Type V secretion system LNQ46_002225 PF13332 Hemagglutinin repeat LNQ46_002225 PF05860 haemagglutination activity domain LNQ46_002225 PF04829 Pre-toxin domain with VENN motif LNQ46_002250 PF00535 Glycosyl transferase family 2 LNQ46_002255 PF08241 Methyltransferase domain LNQ46_002280 PF00106 short chain dehydrogenase LNQ46_002305 PF02661 Fic/DOC family LNQ46_002325 PF13148 Protein of unknown function (DUF3987) LNQ46_002365 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LNQ46_002370 PF06755 CbtA_toxin of type IV toxin-antitoxin system LNQ46_002380 PF02899 Phage integrase, N-terminal SAM-like domain LNQ46_002380 PF00589 Phage integrase family LNQ46_002390 PF07022 Bacteriophage CI repressor helix-turn-helix domain LNQ46_002390 PF16452 Bacteriophage CI repressor C-terminal domain LNQ46_002400 PF06892 Phage regulatory protein CII (CP76) LNQ46_002430 PF05840 Bacteriophage replication gene A protein (GPA) LNQ46_002570 PF04539 Sigma-70 region 3 LNQ46_002570 PF04542 Sigma-70 region 2 LNQ46_002570 PF00140 Sigma-70 factor, region 1.2 LNQ46_002570 PF04546 Sigma-70, non-essential region LNQ46_002570 PF04545 Sigma-70, region 4 LNQ46_002570 PF03979 Sigma-70 factor, region 1.1 LNQ46_002575 PF01807 CHC2 zinc finger LNQ46_002575 PF10410 DnaB-helicase binding domain of primase LNQ46_002575 PF08278 DNA primase DnaG DnaB-binding LNQ46_002575 PF08275 DNA primase catalytic core, N-terminal domain LNQ46_002580 PF01165 Ribosomal protein S21 LNQ46_002585 PF00814 Glycoprotease family LNQ46_002590 PF02660 Glycerol-3-phosphate acyltransferase LNQ46_002595 PF02152 Dihydroneopterin aldolase LNQ46_002600 PF02673 Bacitracin resistance protein BacA LNQ46_002605 PF01743 Poly A polymerase head domain LNQ46_002605 PF12627 Probable RNA and SrmB- binding site of polymerase A LNQ46_002605 PF01966 HD domain LNQ46_002610 PF08239 Bacterial SH3 domain LNQ46_002615 PF01928 CYTH domain LNQ46_002620 PF08335 GlnD PII-uridylyltransferase LNQ46_002620 PF03710 Glutamate-ammonia ligase adenylyltransferase LNQ46_002625 PF01467 Cytidylyltransferase-like LNQ46_002625 PF00294 pfkB family carbohydrate kinase LNQ46_002630 PF04380 Membrane fusogenic activity LNQ46_002635 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LNQ46_002640 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LNQ46_002645 PF03738 Glutathionylspermidine synthase preATP-grasp LNQ46_002650 PF06693 Protein of unknown function (DUF1190) LNQ46_002655 PF02321 Outer membrane efflux protein LNQ46_002660 PF00293 NUDIX domain LNQ46_002665 PF06853 Protein of unknown function (DUF1249) LNQ46_002670 PF00149 Calcineurin-like phosphoesterase LNQ46_002675 PF05728 Uncharacterised protein family (UPF0227) LNQ46_002680 PF00204 DNA gyrase B LNQ46_002680 PF00986 DNA gyrase B subunit, carboxyl terminus LNQ46_002680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_002680 PF01751 Toprim domain LNQ46_002685 PF03466 LysR substrate binding domain LNQ46_002685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_002690 PF02525 Flavodoxin-like fold LNQ46_002695 PF03989 DNA gyrase C-terminal domain, beta-propeller LNQ46_002695 PF00521 DNA gyrase/topoisomerase IV, subunit A LNQ46_002700 PF01553 Acyltransferase LNQ46_002705 PF07732 Multicopper oxidase LNQ46_002705 PF07731 Multicopper oxidase LNQ46_002710 PF11842 Domain of unknown function (DUF3362) LNQ46_002710 PF04055 Radical SAM superfamily LNQ46_002710 PF08497 Radical SAM N-terminal LNQ46_002715 PF00248 Aldo/keto reductase family LNQ46_002720 PF00465 Iron-containing alcohol dehydrogenase LNQ46_002725 PF06719 AraC-type transcriptional regulator N-terminus LNQ46_002725 PF12833 Helix-turn-helix domain LNQ46_002730 PF09335 SNARE associated Golgi protein LNQ46_002735 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ46_002740 PF01618 MotA/TolQ/ExbB proton channel family LNQ46_002745 PF02472 Biopolymer transport protein ExbD/TolR LNQ46_002780 PF00437 Type II/IV secretion system protein LNQ46_002795 PF04972 BON domain LNQ46_002795 PF00263 Bacterial type II and III secretion system protein LNQ46_002795 PF13629 Pilus formation protein N terminal region LNQ46_002820 PF08501 Shikimate dehydrogenase substrate binding domain LNQ46_002825 PF00593 TonB dependent receptor LNQ46_002825 PF07715 TonB-dependent Receptor Plug Domain LNQ46_002830 PF00756 Putative esterase LNQ46_002830 PF11806 Domain of unknown function (DUF3327) LNQ46_002835 PF03621 MbtH-like protein LNQ46_002840 PF00501 AMP-binding enzyme LNQ46_002840 PF00668 Condensation domain LNQ46_002840 PF00550 Phosphopantetheine attachment site LNQ46_002840 PF00975 Thioesterase domain LNQ46_002840 PF13193 AMP-binding enzyme C-terminal domain LNQ46_002850 PF00005 ABC transporter LNQ46_002855 PF01032 FecCD transport family LNQ46_002860 PF01032 FecCD transport family LNQ46_002865 PF05977 Transmembrane secretion effector LNQ46_002870 PF01497 Periplasmic binding protein LNQ46_002875 PF00425 chorismate binding enzyme LNQ46_002880 PF00501 AMP-binding enzyme LNQ46_002880 PF13193 AMP-binding enzyme C-terminal domain LNQ46_002885 PF00550 Phosphopantetheine attachment site LNQ46_002885 PF00857 Isochorismatase family LNQ46_002895 PF13193 AMP-binding enzyme C-terminal domain LNQ46_002895 PF00668 Condensation domain LNQ46_002895 PF00550 Phosphopantetheine attachment site LNQ46_002895 PF00975 Thioesterase domain LNQ46_002895 PF00501 AMP-binding enzyme LNQ46_002900 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_002905 PF01490 Transmembrane amino acid transporter protein LNQ46_002910 PF00871 Acetokinase family LNQ46_002915 PF01228 Glycine radical LNQ46_002915 PF02901 Pyruvate formate lyase-like LNQ46_002920 PF00294 pfkB family carbohydrate kinase LNQ46_002955 PF01464 Transglycosylase SLT domain LNQ46_002955 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LNQ46_002960 PF04362 Bacterial Fe(2+) trafficking LNQ46_002965 PF00633 Helix-hairpin-helix motif LNQ46_002965 PF00730 HhH-GPD superfamily base excision DNA repair protein LNQ46_002965 PF10576 Iron-sulfur binding domain of endonuclease III LNQ46_002965 PF14815 NUDIX domain LNQ46_002970 PF02390 Putative methyltransferase LNQ46_002975 PF04320 Protein with unknown function (DUF469) LNQ46_002980 PF04960 Glutaminase LNQ46_002985 PF11101 Protein of unknown function (DUF2884) LNQ46_002990 PF04055 Radical SAM superfamily LNQ46_002990 PF06969 HemN C-terminal domain LNQ46_002995 PF01725 Ham1 family LNQ46_003000 PF02594 Uncharacterised ACR, YggU family COG1872 LNQ46_003005 PF02325 YGGT family LNQ46_003010 PF03807 NADP oxidoreductase coenzyme F420-dependent LNQ46_003010 PF14748 Pyrroline-5-carboxylate reductase dimerisation LNQ46_003015 PF01168 Alanine racemase, N-terminal domain LNQ46_003020 PF00437 Type II/IV secretion system protein LNQ46_003025 PF04371 Porphyromonas-type peptidyl-arginine deiminase LNQ46_003030 PF00795 Carbon-nitrogen hydrolase LNQ46_003035 PF03652 Holliday junction resolvase LNQ46_003040 PF02622 Uncharacterized ACR, COG1678 LNQ46_003045 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LNQ46_003045 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LNQ46_003050 PF04452 RNA methyltransferase LNQ46_003055 PF04231 Endonuclease I LNQ46_003060 PF10263 SprT-like family LNQ46_003060 PF17283 SprT-like zinc ribbon domain LNQ46_003070 PF04143 Sulphur transport LNQ46_003080 PF02773 S-adenosylmethionine synthetase, C-terminal domain LNQ46_003080 PF00438 S-adenosylmethionine synthetase, N-terminal domain LNQ46_003080 PF02772 S-adenosylmethionine synthetase, central domain LNQ46_003085 PF17944 Arginine decarboxylase C-terminal helical extension LNQ46_003085 PF17810 Arginine decarboxylase helical bundle domain LNQ46_003085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNQ46_003095 PF02779 Transketolase, pyrimidine binding domain LNQ46_003095 PF02780 Transketolase, C-terminal domain LNQ46_003095 PF00456 Transketolase, thiamine diphosphate binding domain LNQ46_003100 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LNQ46_003100 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LNQ46_003105 PF00162 Phosphoglycerate kinase LNQ46_003110 PF01116 Fructose-bisphosphate aldolase class-II LNQ46_003115 PF00924 Mechanosensitive ion channel LNQ46_003115 PF05552 Conserved TM helix LNQ46_003120 PF01810 LysE type translocator LNQ46_003125 PF04402 Protein of unknown function (DUF541) LNQ46_003130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_003130 PF03466 LysR substrate binding domain LNQ46_003135 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LNQ46_003140 PF01842 ACT domain LNQ46_003140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ46_003140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ46_003145 PF01812 5-formyltetrahydrofolate cyclo-ligase family LNQ46_003155 PF05164 Cell division protein ZapA LNQ46_003160 PF03695 Uncharacterised protein family (UPF0149) LNQ46_003165 PF00557 Metallopeptidase family M24 LNQ46_003165 PF05195 Aminopeptidase P, N-terminal domain LNQ46_003170 PF01494 FAD binding domain LNQ46_003175 PF01494 FAD binding domain LNQ46_003180 PF01571 Aminomethyltransferase folate-binding domain LNQ46_003180 PF08669 Glycine cleavage T-protein C-terminal barrel domain LNQ46_003185 PF01597 Glycine cleavage H-protein LNQ46_003190 PF02347 Glycine cleavage system P-protein LNQ46_003200 PF03006 Haemolysin-III related LNQ46_003205 PF01571 Aminomethyltransferase folate-binding domain LNQ46_003210 PF03937 Flavinator of succinate dehydrogenase LNQ46_003215 PF07254 Membrane-bound toxin component of toxin-antitoxin system LNQ46_003220 PF00258 Flavodoxin LNQ46_003225 PF02899 Phage integrase, N-terminal SAM-like domain LNQ46_003225 PF00589 Phage integrase family LNQ46_003230 PF10411 Disulfide bond isomerase protein N-terminus LNQ46_003230 PF13098 Thioredoxin-like domain LNQ46_003235 PF01368 DHH family LNQ46_003235 PF02272 DHHA1 domain LNQ46_003235 PF17768 RecJ OB domain LNQ46_003245 PF00152 tRNA synthetases class II (D, K and N) LNQ46_003245 PF01336 OB-fold nucleic acid binding domain LNQ46_003255 PF02405 Permease MlaE LNQ46_003260 PF00005 ABC transporter LNQ46_003285 PF00263 Bacterial type II and III secretion system protein LNQ46_003285 PF03958 Bacterial type II/III secretion system short domain LNQ46_003290 PF00437 Type II/IV secretion system protein LNQ46_003295 PF00482 Type II secretion system (T2SS), protein F LNQ46_003300 PF07963 Prokaryotic N-terminal methylation motif LNQ46_003300 PF08334 Type II secretion system (T2SS), protein G LNQ46_003310 PF07963 Prokaryotic N-terminal methylation motif LNQ46_003310 PF02501 Type II secretion system (T2SS), protein I LNQ46_003315 PF07963 Prokaryotic N-terminal methylation motif LNQ46_003315 PF11612 Type II secretion system (T2SS), protein J LNQ46_003355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_003355 PF03466 LysR substrate binding domain LNQ46_003360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_003360 PF03466 LysR substrate binding domain LNQ46_003365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNQ46_003365 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LNQ46_003370 PF00356 Bacterial regulatory proteins, lacI family LNQ46_003375 PF01553 Acyltransferase LNQ46_003375 PF00501 AMP-binding enzyme LNQ46_003375 PF13193 AMP-binding enzyme C-terminal domain LNQ46_003380 PF07690 Major Facilitator Superfamily LNQ46_003385 PF00248 Aldo/keto reductase family LNQ46_003390 PF03741 Integral membrane protein TerC family LNQ46_003395 PF02976 DNA mismatch repair enzyme MutH LNQ46_003400 PF00293 NUDIX domain LNQ46_003405 PF00391 PEP-utilising enzyme, mobile domain LNQ46_003405 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ46_003405 PF05524 PEP-utilising enzyme, N-terminal LNQ46_003405 PF01590 GAF domain LNQ46_003410 PF01790 Prolipoprotein diacylglyceryl transferase LNQ46_003415 PF00303 Thymidylate synthase LNQ46_003420 PF07963 Prokaryotic N-terminal methylation motif LNQ46_003420 PF00114 Pilin (bacterial filament) LNQ46_003435 PF07963 Prokaryotic N-terminal methylation motif LNQ46_003435 PF12528 Type II secretion prepilin peptidase dependent protein C LNQ46_003440 PF17946 RecC C-terminal domain LNQ46_003445 PF00675 Insulinase (Peptidase family M16) LNQ46_003445 PF05193 Peptidase M16 inactive domain LNQ46_003445 PF16187 Middle or third domain of peptidase_M16 LNQ46_003450 PF12705 PD-(D/E)XK nuclease superfamily LNQ46_003450 PF00580 UvrD/REP helicase N-terminal domain LNQ46_003450 PF13361 UvrD-like helicase C-terminal domain LNQ46_003455 PF13538 UvrD-like helicase C-terminal domain LNQ46_003460 PF00696 Amino acid kinase family LNQ46_003460 PF00583 Acetyltransferase (GNAT) family LNQ46_003465 PF01520 N-acetylmuramoyl-L-alanine amidase LNQ46_003465 PF11741 AMIN domain LNQ46_003485 PF06725 3D domain LNQ46_003485 PF03562 MltA specific insert domain LNQ46_003490 PF00899 ThiF family LNQ46_003495 PF02657 Fe-S metabolism associated domain LNQ46_003500 PF00266 Aminotransferase class-V LNQ46_003505 PF06004 Bacterial protein of unknown function (DUF903) LNQ46_003510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_003510 PF03466 LysR substrate binding domain LNQ46_003515 PF04241 Protein of unknown function (DUF423) LNQ46_003520 PF01728 FtsJ-like methyltransferase LNQ46_003520 PF18125 RlmM ferredoxin-like domain LNQ46_003525 PF01367 5'-3' exonuclease, C-terminal SAM fold LNQ46_003525 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNQ46_003530 PF11892 Domain of unknown function (DUF3412) LNQ46_003530 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LNQ46_003530 PF03641 Possible lysine decarboxylase LNQ46_003535 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LNQ46_003535 PF14489 QueF-like protein LNQ46_003540 PF07348 Syd protein (SUKH-2) LNQ46_003545 PF04287 tRNA pseudouridine synthase C LNQ46_003550 PF00849 RNA pseudouridylate synthase LNQ46_003555 PF00258 Flavodoxin LNQ46_003560 PF11944 Protein of unknown function (DUF3461) LNQ46_003565 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ46_003565 PF14602 Hexapeptide repeat of succinyl-transferase LNQ46_003565 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LNQ46_003570 PF01842 ACT domain LNQ46_003570 PF08335 GlnD PII-uridylyltransferase LNQ46_003570 PF01966 HD domain LNQ46_003570 PF01909 Nucleotidyltransferase domain LNQ46_003575 PF00557 Metallopeptidase family M24 LNQ46_003580 PF00318 Ribosomal protein S2 LNQ46_003585 PF00889 Elongation factor TS LNQ46_003590 PF00696 Amino acid kinase family LNQ46_003595 PF01765 Ribosome recycling factor LNQ46_003600 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LNQ46_003600 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LNQ46_003600 PF13288 DXP reductoisomerase C-terminal domain LNQ46_003605 PF01255 Putative undecaprenyl diphosphate synthase LNQ46_003615 PF17820 PDZ domain LNQ46_003615 PF02163 Peptidase family M50 LNQ46_003620 PF01103 Surface antigen LNQ46_003620 PF07244 Surface antigen variable number repeat LNQ46_003625 PF03938 Outer membrane protein (OmpH-like) LNQ46_003630 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ46_003630 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LNQ46_003635 PF07977 FabA-like domain LNQ46_003640 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ46_003640 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LNQ46_003645 PF02684 Lipid-A-disaccharide synthetase LNQ46_003650 PF01351 Ribonuclease HII LNQ46_003655 PF02811 PHP domain LNQ46_003655 PF14579 Helix-hairpin-helix motif LNQ46_003655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LNQ46_003655 PF07733 Bacterial DNA polymerase III alpha NTPase domain LNQ46_003655 PF01336 OB-fold nucleic acid binding domain LNQ46_003660 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LNQ46_003675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNQ46_003680 PF01171 PP-loop family LNQ46_003680 PF09179 TilS substrate binding domain LNQ46_003680 PF11734 TilS substrate C-terminal domain LNQ46_003685 PF00034 Cytochrome c LNQ46_003690 PF07073 Modulator of Rho-dependent transcription termination (ROF) LNQ46_003695 PF06786 Uncharacterised protein family (UPF0253) LNQ46_003700 PF07152 YaeQ protein LNQ46_003705 PF00472 RF-1 domain LNQ46_003710 PF17185 NlpE C-terminal OB domain LNQ46_003710 PF04170 NlpE N-terminal domain LNQ46_003715 PF03129 Anticodon binding domain LNQ46_003715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ46_003715 PF04073 Aminoacyl-tRNA editing domain LNQ46_003720 PF01980 tRNA-methyltransferase O LNQ46_003720 PF18389 TrmO C-terminal domain LNQ46_003725 PF16358 RcsF lipoprotein LNQ46_003730 PF03180 NLPA lipoprotein LNQ46_003735 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_003740 PF09383 NIL domain LNQ46_003740 PF00005 ABC transporter LNQ46_003775 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ46_003780 PF01464 Transglycosylase SLT domain LNQ46_003780 PF01476 LysM domain LNQ46_003785 PF16123 Hydroxyacylglutathione hydrolase C-terminus LNQ46_003785 PF00753 Metallo-beta-lactamase superfamily LNQ46_003790 PF08241 Methyltransferase domain LNQ46_003795 PF00075 RNase H LNQ46_003800 PF00929 Exonuclease LNQ46_003810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNQ46_003810 PF09317 Domain of unknown function (DUF1974) LNQ46_003810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNQ46_003815 PF13580 SIS domain LNQ46_003820 PF13230 Glutamine amidotransferases class-II LNQ46_003825 PF03734 L,D-transpeptidase catalytic domain LNQ46_003830 PF11973 NQRA C-terminal domain LNQ46_003830 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LNQ46_003835 PF03116 NQR2, RnfD, RnfE family LNQ46_003840 PF04205 FMN-binding domain LNQ46_003845 PF02508 Rnf-Nqr subunit, membrane protein LNQ46_003850 PF02508 Rnf-Nqr subunit, membrane protein LNQ46_003855 PF00970 Oxidoreductase FAD-binding domain LNQ46_003855 PF00175 Oxidoreductase NAD-binding domain LNQ46_003855 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ46_003860 PF02424 ApbE family LNQ46_003865 PF04400 (Na+)-NQR maturation NqrM LNQ46_003870 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ46_003875 PF11799 impB/mucB/samB family C-terminal domain LNQ46_003875 PF00817 impB/mucB/samB family LNQ46_003875 PF11798 IMS family HHH motif LNQ46_003880 PF07687 Peptidase dimerisation domain LNQ46_003880 PF01546 Peptidase family M20/M25/M40 LNQ46_003885 PF00156 Phosphoribosyl transferase domain LNQ46_003890 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LNQ46_003895 PF07417 Sigma factor-binding transcriptional regulator Crl LNQ46_003900 PF01472 PUA domain LNQ46_003900 PF00696 Amino acid kinase family LNQ46_003905 PF00171 Aldehyde dehydrogenase family LNQ46_003910 PF07238 PilZ domain LNQ46_003910 PF07317 Flagellar regulator YcgR LNQ46_003935 PF00593 TonB dependent receptor LNQ46_003935 PF07715 TonB-dependent Receptor Plug Domain LNQ46_003940 PF01202 Shikimate kinase LNQ46_003960 PF07302 AroM protein LNQ46_003965 PF06865 Pyrimidine/purine nucleoside phosphorylase LNQ46_003970 PF04381 Putative exonuclease, RdgC LNQ46_003975 PF00480 ROK family LNQ46_003980 PF13476 AAA domain LNQ46_003985 PF00149 Calcineurin-like phosphoesterase LNQ46_003985 PF12320 Type 5 capsule protein repressor C-terminal domain LNQ46_003990 PF00072 Response regulator receiver domain LNQ46_003990 PF00486 Transcriptional regulatory protein, C terminal LNQ46_003995 PF11808 Phosphate regulon sensor protein PhoR LNQ46_003995 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_003995 PF00989 PAS fold LNQ46_003995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_004000 PF12849 PBP superfamily domain LNQ46_004005 PF05525 Branched-chain amino acid transport protein LNQ46_004010 PF00324 Amino acid permease LNQ46_004015 PF00128 Alpha amylase, catalytic domain LNQ46_004015 PF02903 Alpha amylase, N-terminal ig-like domain LNQ46_004025 PF10417 C-terminal domain of 1-Cys peroxiredoxin LNQ46_004025 PF00578 AhpC/TSA family LNQ46_004030 PF04336 Acyl carrier protein phosphodiesterase LNQ46_004035 PF02547 Queuosine biosynthesis protein LNQ46_004040 PF01702 Queuine tRNA-ribosyltransferase LNQ46_004045 PF02699 Preprotein translocase subunit LNQ46_004050 PF07549 SecD/SecF GG Motif LNQ46_004050 PF02355 Protein export membrane protein LNQ46_004050 PF13721 SecD export protein N-terminal TM region LNQ46_004055 PF07549 SecD/SecF GG Motif LNQ46_004055 PF02355 Protein export membrane protein LNQ46_004060 PF03477 ATP cone domain LNQ46_004065 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ46_004065 PF01872 RibD C-terminal domain LNQ46_004070 PF00885 6,7-dimethyl-8-ribityllumazine synthase LNQ46_004075 PF01029 NusB family LNQ46_004080 PF00586 AIR synthase related protein, N-terminal domain LNQ46_004080 PF02769 AIR synthase related protein, C-terminal domain LNQ46_004085 PF04608 Phosphatidylglycerophosphatase A LNQ46_004090 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LNQ46_004090 PF02779 Transketolase, pyrimidine binding domain LNQ46_004090 PF02780 Transketolase, C-terminal domain LNQ46_004095 PF00348 Polyprenyl synthetase LNQ46_004100 PF02609 Exonuclease VII small subunit LNQ46_004105 PF02568 Thiamine biosynthesis protein (ThiI) LNQ46_004105 PF02926 THUMP domain LNQ46_004110 PF02954 Bacterial regulatory protein, Fis family LNQ46_004110 PF00072 Response regulator receiver domain LNQ46_004110 PF14532 Sigma-54 interaction domain LNQ46_004115 PF00672 HAMP domain LNQ46_004115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_004115 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_004125 PF07690 Major Facilitator Superfamily LNQ46_004130 PF01965 DJ-1/PfpI family LNQ46_004135 PF02558 Ketopantoate reductase PanE/ApbA LNQ46_004135 PF08546 Ketopantoate reductase PanE/ApbA C terminal LNQ46_004140 PF04461 Protein of unknown function (DUF520) LNQ46_004145 PF07690 Major Facilitator Superfamily LNQ46_004150 PF01040 UbiA prenyltransferase family LNQ46_004155 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LNQ46_004160 PF00510 Cytochrome c oxidase subunit III LNQ46_004165 PF00115 Cytochrome C and Quinol oxidase polypeptide I LNQ46_004170 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LNQ46_004170 PF06481 COX Aromatic Rich Motif LNQ46_004175 PF03502 Nucleoside-specific channel-forming protein, Tsx LNQ46_004180 PF07690 Major Facilitator Superfamily LNQ46_004185 PF03923 Uncharacterized lipoprotein LNQ46_004185 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LNQ46_004190 PF01722 BolA-like protein LNQ46_004195 PF05698 Bacterial trigger factor protein (TF) C-terminus LNQ46_004195 PF05697 Bacterial trigger factor protein (TF) LNQ46_004195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ46_004200 PF00574 Clp protease LNQ46_004205 PF06689 ClpX C4-type zinc finger LNQ46_004205 PF07724 AAA domain (Cdc48 subfamily) LNQ46_004205 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ46_004210 PF00004 ATPase family associated with various cellular activities (AAA) LNQ46_004210 PF05362 Lon protease (S16) C-terminal proteolytic domain LNQ46_004210 PF02190 ATP-dependent protease La (LON) substrate-binding domain LNQ46_004215 PF00216 Bacterial DNA-binding protein LNQ46_004220 PF13145 PPIC-type PPIASE domain LNQ46_004235 PF06508 Queuosine biosynthesis protein QueC LNQ46_004240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ46_004240 PF12793 Sugar transport-related sRNA regulator N-term LNQ46_004255 PF01037 Lrp/AsnC ligand binding domain LNQ46_004255 PF13404 AsnC-type helix-turn-helix domain LNQ46_004260 PF00664 ABC transporter transmembrane region LNQ46_004260 PF00005 ABC transporter LNQ46_004265 PF00005 ABC transporter LNQ46_004265 PF00664 ABC transporter transmembrane region LNQ46_004270 PF00543 Nitrogen regulatory protein P-II LNQ46_004275 PF00909 Ammonium Transporter Family LNQ46_004285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LNQ46_004295 PF05321 Haemolysin expression modulating protein LNQ46_004300 PF10757 Biofilm formation regulator YbaJ LNQ46_004310 PF00444 Ribosomal protein L36 LNQ46_004315 PF01197 Ribosomal protein L31 LNQ46_004320 PF00873 AcrB/AcrD/AcrF family LNQ46_004325 PF00529 HlyD membrane-fusion protein of T1SS LNQ46_004325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ46_004330 PF08361 MAATS-type transcriptional repressor, C-terminal region LNQ46_004330 PF00440 Bacterial regulatory proteins, tetR family LNQ46_004335 PF02635 DsrE/DsrF-like family LNQ46_004340 PF00924 Mechanosensitive ion channel LNQ46_004340 PF12795 Mechanosensitive ion channel porin domain LNQ46_004340 PF12794 Mechanosensitive ion channel inner membrane domain 1 LNQ46_004345 PF10689 Protein of unknown function (DUF2496) LNQ46_004355 PF04304 Protein of unknown function (DUF454) LNQ46_004360 PF00156 Phosphoribosyl transferase domain LNQ46_004365 PF01970 Tripartite tricarboxylate transporter TctA family LNQ46_004380 PF00072 Response regulator receiver domain LNQ46_004380 PF00486 Transcriptional regulatory protein, C terminal LNQ46_004385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_004385 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_004390 PF12170 DNA polymerase III tau subunit V interacting with alpha LNQ46_004390 PF12169 DNA polymerase III subunits gamma and tau domain III LNQ46_004390 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LNQ46_004395 PF02575 YbaB/EbfC DNA-binding family LNQ46_004400 PF13662 Toprim domain LNQ46_004400 PF02132 RecR protein LNQ46_004405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_004405 PF00183 Hsp90 protein LNQ46_004410 PF05191 Adenylate kinase, active site lid LNQ46_004415 PF00762 Ferrochelatase LNQ46_004420 PF02706 Chain length determinant protein LNQ46_004425 PF00294 pfkB family carbohydrate kinase LNQ46_004430 PF00999 Sodium/hydrogen exchanger family LNQ46_004430 PF02254 TrkA-N domain LNQ46_004435 PF02872 5'-nucleotidase, C-terminal domain LNQ46_004435 PF00149 Calcineurin-like phosphoesterase LNQ46_004440 PF04073 Aminoacyl-tRNA editing domain LNQ46_004445 PF01963 TraB family LNQ46_004450 PF00403 Heavy-metal-associated domain LNQ46_004455 PF13411 MerR HTH family regulatory protein LNQ46_004460 PF01957 NfeD-like C-terminal, partner-binding LNQ46_004465 PF16200 C-terminal region of band_7 LNQ46_004465 PF01145 SPFH domain / Band 7 family LNQ46_004470 PF00085 Thioredoxin LNQ46_004475 PF00106 short chain dehydrogenase LNQ46_004480 PF13472 GDSL-like Lipase/Acylhydrolase family LNQ46_004485 PF00005 ABC transporter LNQ46_004495 PF02222 ATP-grasp domain LNQ46_004495 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LNQ46_004500 PF00731 AIR carboxylase LNQ46_004505 PF00149 Calcineurin-like phosphoesterase LNQ46_004510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LNQ46_004515 PF01406 tRNA synthetases class I (C) catalytic domain LNQ46_004515 PF09190 DALR domain LNQ46_004535 PF00419 Fimbrial protein LNQ46_004540 PF13954 PapC N-terminal domain LNQ46_004540 PF00577 Outer membrane usher protein LNQ46_004540 PF13953 PapC C-terminal domain LNQ46_004545 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ46_004545 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ46_004580 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LNQ46_004580 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LNQ46_004590 PF01022 Bacterial regulatory protein, arsR family LNQ46_004595 PF02040 Arsenical pump membrane protein LNQ46_004600 PF03960 ArsC family LNQ46_004610 PF00501 AMP-binding enzyme LNQ46_004635 PF01292 Prokaryotic cytochrome b561 LNQ46_004645 PF00343 Carbohydrate phosphorylase LNQ46_004655 PF00486 Transcriptional regulatory protein, C terminal LNQ46_004655 PF00072 Response regulator receiver domain LNQ46_004665 PF00483 Nucleotidyl transferase LNQ46_004675 PF03552 Cellulose synthase LNQ46_004675 PF07238 PilZ domain LNQ46_004675 PF00535 Glycosyl transferase family 2 LNQ46_004695 PF16355 Domain of unknown function (DUF4982) LNQ46_004695 PF00703 Glycosyl hydrolases family 2 LNQ46_004695 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LNQ46_004695 PF02837 Glycosyl hydrolases family 2, sugar binding domain LNQ46_004700 PF00672 HAMP domain LNQ46_004700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_004700 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_004700 PF01627 Hpt domain LNQ46_004700 PF00072 Response regulator receiver domain LNQ46_004700 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNQ46_004705 PF00072 Response regulator receiver domain LNQ46_004705 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_004710 PF00440 Bacterial regulatory proteins, tetR family LNQ46_004740 PF00196 Bacterial regulatory proteins, luxR family LNQ46_004745 PF00313 'Cold-shock' DNA-binding domain LNQ46_004750 PF00313 'Cold-shock' DNA-binding domain LNQ46_004755 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LNQ46_004765 PF05230 MASE2 domain LNQ46_004765 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_004770 PF02416 mttA/Hcf106 family LNQ46_004775 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LNQ46_004775 PF04055 Radical SAM superfamily LNQ46_004780 PF03099 Biotin/lipoate A/B protein ligase family LNQ46_004785 PF04359 Protein of unknown function (DUF493) LNQ46_004790 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ46_004790 PF07943 Penicillin-binding protein 5, C-terminal domain LNQ46_004795 PF03330 Lytic transglycolase LNQ46_004795 PF05036 Sporulation related domain LNQ46_004800 PF01098 Cell cycle protein LNQ46_004805 PF03717 Penicillin-binding Protein dimerisation domain LNQ46_004805 PF00905 Penicillin binding protein transpeptidase domain LNQ46_004810 PF02590 Predicted SPOUT methyltransferase LNQ46_004820 PF00589 Phage integrase family LNQ46_004820 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LNQ46_004875 PF06630 Enterobacterial exodeoxyribonuclease VIII LNQ46_004875 PF12684 PDDEXK-like domain of unknown function (DUF3799) LNQ46_004930 PF06992 Replication protein P LNQ46_004945 PF05772 NinB protein LNQ46_004970 PF00959 Phage lysozyme LNQ46_004975 PF03245 Bacteriophage Rz lysis protein LNQ46_005060 PF01551 Peptidase family M23 LNQ46_005060 PF10145 Phage-related minor tail protein LNQ46_005060 PF01464 Transglycosylase SLT domain LNQ46_005110 PF07484 Phage Tail Collar Domain LNQ46_005110 PF03335 Phage tail fibre repeat LNQ46_005110 PF08400 Prophage tail fibre N-terminal LNQ46_005115 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ46_005120 PF01467 Cytidylyltransferase-like LNQ46_005125 PF06144 DNA polymerase III, delta subunit LNQ46_005125 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LNQ46_005130 PF04390 Lipopolysaccharide-assembly LNQ46_005135 PF08264 Anticodon-binding domain of tRNA LNQ46_005135 PF00133 tRNA synthetases class I (I, L, M and V) LNQ46_005135 PF13603 Leucyl-tRNA synthetase, Domain 2 LNQ46_005140 PF07295 Zinc-ribbon containing domain LNQ46_005145 PF00005 ABC transporter LNQ46_005150 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_005155 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_005160 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_005165 PF00795 Carbon-nitrogen hydrolase LNQ46_005170 PF00571 CBS domain LNQ46_005170 PF03471 Transporter associated domain LNQ46_005175 PF02130 Uncharacterized protein family UPF0054 LNQ46_005180 PF02562 PhoH-like protein LNQ46_005185 PF04055 Radical SAM superfamily LNQ46_005185 PF01938 TRAM domain LNQ46_005185 PF00919 Uncharacterized protein family UPF0004 LNQ46_005190 PF01494 FAD binding domain LNQ46_005225 PF00733 Asparagine synthase LNQ46_005225 PF13537 Glutamine amidotransferase domain LNQ46_005230 PF13344 Haloacid dehalogenase-like hydrolase LNQ46_005235 PF01047 MarR family LNQ46_005235 PF00480 ROK family LNQ46_005240 PF01979 Amidohydrolase family LNQ46_005245 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LNQ46_005250 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LNQ46_005250 PF00367 phosphotransferase system, EIIB LNQ46_005250 PF02378 Phosphotransferase system, EIIC LNQ46_005255 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ46_005255 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LNQ46_005260 PF03573 outer membrane porin, OprD family LNQ46_005265 PF13982 YbfN-like lipoprotein LNQ46_005270 PF03173 Putative carbohydrate binding domain LNQ46_005270 PF00728 Glycosyl hydrolase family 20, catalytic domain LNQ46_005270 PF02838 Glycosyl hydrolase family 20, domain 2 LNQ46_005270 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LNQ46_005275 PF01475 Ferric uptake regulator family LNQ46_005280 PF00258 Flavodoxin LNQ46_005285 PF02203 Tar ligand binding domain homologue LNQ46_005285 PF00672 HAMP domain LNQ46_005285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ46_005290 PF01402 Ribbon-helix-helix protein, copG family LNQ46_005295 PF12697 Alpha/beta hydrolase family LNQ46_005300 PF03925 SeqA protein C-terminal domain LNQ46_005300 PF17206 SeqA protein N-terminal domain LNQ46_005305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNQ46_005305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNQ46_005305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNQ46_005305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNQ46_005315 PF00072 Response regulator receiver domain LNQ46_005315 PF00486 Transcriptional regulatory protein, C terminal LNQ46_005320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_005320 PF02702 Osmosensitive K+ channel His kinase sensor domain LNQ46_005320 PF13493 Domain of unknown function (DUF4118) LNQ46_005320 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_005320 PF13492 GAF domain LNQ46_005325 PF02669 K+-transporting ATPase, c chain LNQ46_005335 PF03814 Potassium-transporting ATPase A subunit LNQ46_005340 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) LNQ46_005345 PF10725 Protein of unknown function (DUF2517) LNQ46_005350 PF08349 Protein of unknown function (DUF1722) LNQ46_005355 PF00875 DNA photolyase LNQ46_005355 PF03441 FAD binding domain of DNA photolyase LNQ46_005360 PF02112 cAMP phosphodiesterases class-II LNQ46_005365 PF01784 NIF3 (NGG1p interacting factor 3) LNQ46_005370 PF02682 Carboxyltransferase domain, subdomain C and D LNQ46_005375 PF02626 Carboxyltransferase domain, subdomain A and B LNQ46_005380 PF03746 LamB/YcsF family LNQ46_005395 PF01470 Pyroglutamyl peptidase LNQ46_005405 PF00285 Citrate synthase, C-terminal domain LNQ46_005410 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LNQ46_005415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LNQ46_005420 PF00890 FAD binding domain LNQ46_005420 PF02910 Fumarate reductase flavoprotein C-term LNQ46_005425 PF13085 2Fe-2S iron-sulfur cluster binding domain LNQ46_005430 PF02779 Transketolase, pyrimidine binding domain LNQ46_005430 PF16870 2-oxoglutarate dehydrogenase C-terminal LNQ46_005430 PF00676 Dehydrogenase E1 component LNQ46_005430 PF16078 2-oxoglutarate dehydrogenase N-terminus LNQ46_005435 PF02817 e3 binding domain LNQ46_005435 PF00364 Biotin-requiring enzyme LNQ46_005435 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNQ46_005440 PF00549 CoA-ligase LNQ46_005440 PF08442 ATP-grasp domain LNQ46_005445 PF00549 CoA-ligase LNQ46_005445 PF02629 CoA binding domain LNQ46_005450 PF00149 Calcineurin-like phosphoesterase LNQ46_005450 PF02872 5'-nucleotidase, C-terminal domain LNQ46_005455 PF01654 Cytochrome bd terminal oxidase subunit I LNQ46_005460 PF02322 Cytochrome bd terminal oxidase subunit II LNQ46_005465 PF08173 Membrane bound YbgT-like protein LNQ46_005470 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LNQ46_005475 PF03061 Thioesterase superfamily LNQ46_005480 PF01618 MotA/TolQ/ExbB proton channel family LNQ46_005485 PF02472 Biopolymer transport protein ExbD/TolR LNQ46_005490 PF06519 TolA C-terminal LNQ46_005490 PF06519 TolA C-terminal LNQ46_005495 PF07676 WD40-like Beta Propeller Repeat LNQ46_005495 PF04052 TolB amino-terminal domain LNQ46_005500 PF00691 OmpA family LNQ46_005505 PF16331 TolA binding protein trimerisation LNQ46_005505 PF13174 Tetratricopeptide repeat LNQ46_005535 PF02445 Quinolinate synthetase A protein LNQ46_005540 PF04973 Nicotinamide mononucleotide transporter LNQ46_005545 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_005545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_005545 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_005545 PF00072 Response regulator receiver domain LNQ46_005545 PF00989 PAS fold LNQ46_005545 PF01627 Hpt domain LNQ46_005550 PF00072 Response regulator receiver domain LNQ46_005550 PF00196 Bacterial regulatory proteins, luxR family LNQ46_005555 PF00793 DAHP synthetase I family LNQ46_005560 PF00300 Histidine phosphatase superfamily (branch 1) LNQ46_005570 PF01263 Aldose 1-epimerase LNQ46_005575 PF10509 Galactokinase galactose-binding signature LNQ46_005575 PF08544 GHMP kinases C terminal LNQ46_005575 PF00288 GHMP kinases N terminal domain LNQ46_005580 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LNQ46_005580 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LNQ46_005585 PF16363 GDP-mannose 4,6 dehydratase LNQ46_005600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_005600 PF03459 TOBE domain LNQ46_005605 PF10766 Multidrug efflux pump-associated protein AcrZ LNQ46_005615 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_005620 PF00005 ABC transporter LNQ46_005620 PF03459 TOBE domain LNQ46_005630 PF10282 Lactonase, 7-bladed beta-propeller LNQ46_005635 PF00202 Aminotransferase class-III LNQ46_005640 PF06968 Biotin and Thiamin Synthesis associated domain LNQ46_005640 PF04055 Radical SAM superfamily LNQ46_005645 PF00155 Aminotransferase class I and II LNQ46_005650 PF08241 Methyltransferase domain LNQ46_005660 PF00005 ABC transporter LNQ46_005665 PF04851 Type III restriction enzyme, res subunit LNQ46_005665 PF00271 Helicase conserved C-terminal domain LNQ46_005665 PF02151 UvrB/uvrC motif LNQ46_005665 PF12344 Ultra-violet resistance protein B LNQ46_005665 PF17757 UvrB interaction domain LNQ46_005670 PF09905 DNA-binding protein VF530 LNQ46_005685 PF01032 FecCD transport family LNQ46_005690 PF00005 ABC transporter LNQ46_005695 PF01933 Uncharacterised protein family UPF0052 LNQ46_005700 PF06463 Molybdenum Cofactor Synthesis C LNQ46_005700 PF04055 Radical SAM superfamily LNQ46_005705 PF01967 MoaC family LNQ46_005710 PF02597 ThiS family LNQ46_005715 PF02391 MoaE protein LNQ46_005720 PF01027 Inhibitor of apoptosis-promoting Bax1 LNQ46_005735 PF00005 ABC transporter LNQ46_005740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ46_005745 PF09209 Tetracyclin repressor-like, C-terminal domain LNQ46_005745 PF00440 Bacterial regulatory proteins, tetR family LNQ46_005750 PF00270 DEAD/DEAH box helicase LNQ46_005750 PF00271 Helicase conserved C-terminal domain LNQ46_005755 PF01207 Dihydrouridine synthase (Dus) LNQ46_005765 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ46_005770 PF01565 FAD binding domain LNQ46_005770 PF09330 D-lactate dehydrogenase, membrane binding LNQ46_005775 PF01928 CYTH domain LNQ46_005780 PF01844 HNH endonuclease LNQ46_005790 PF04226 Transglycosylase associated protein LNQ46_005795 PF00005 ABC transporter LNQ46_005805 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_005810 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_005815 PF07308 Protein of unknown function (DUF1456) LNQ46_005820 PF00581 Rhodanese-like domain LNQ46_005825 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LNQ46_005830 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_005835 PF00005 ABC transporter LNQ46_005840 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_005845 PF13520 Amino acid permease LNQ46_005850 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ46_005850 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ46_005850 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ46_005860 PF00892 EamA-like transporter family LNQ46_005865 PF00267 Gram-negative porin LNQ46_005870 PF13307 Helicase C-terminal domain LNQ46_005870 PF06733 DEAD_2 LNQ46_005875 PF02885 Glycosyl transferase family, helical bundle domain LNQ46_005880 PF05971 RNA methyltransferase LNQ46_005885 PF00005 ABC transporter LNQ46_005890 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_005895 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_005900 PF00210 Ferritin-like domain LNQ46_005905 PF13649 Methyltransferase domain LNQ46_005910 PF00892 EamA-like transporter family LNQ46_005915 PF13505 Outer membrane protein beta-barrel domain LNQ46_005920 PF01769 Divalent cation transporter LNQ46_005920 PF00571 CBS domain LNQ46_005920 PF03448 MgtE intracellular N domain LNQ46_005925 PF01545 Cation efflux family LNQ46_005925 PF16916 Dimerisation domain of Zinc Transporter LNQ46_005930 PF00005 ABC transporter LNQ46_005930 PF12848 ABC transporter LNQ46_005935 PF00899 ThiF family LNQ46_005940 PF00994 Probable molybdopterin binding domain LNQ46_005940 PF03453 MoeA N-terminal region (domain I and II) LNQ46_005940 PF03454 MoeA C-terminal region (domain IV) LNQ46_005950 PF00756 Putative esterase LNQ46_005955 PF08240 Alcohol dehydrogenase GroES-like domain LNQ46_005955 PF00107 Zinc-binding dehydrogenase LNQ46_005960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_005960 PF03466 LysR substrate binding domain LNQ46_005965 PF06779 Uncharacterised MFS-type transporter YbfB LNQ46_005970 PF01227 GTP cyclohydrolase I LNQ46_005975 PF04235 Protein of unknown function (DUF418) LNQ46_005980 PF00356 Bacterial regulatory proteins, lacI family LNQ46_005985 PF13407 Periplasmic binding protein domain LNQ46_005990 PF00005 ABC transporter LNQ46_005995 PF02653 Branched-chain amino acid transport system / permease component LNQ46_006000 PF02698 DUF218 domain LNQ46_006005 PF00390 Malic enzyme, N-terminal domain LNQ46_006005 PF03949 Malic enzyme, NAD binding domain LNQ46_006015 PF03466 LysR substrate binding domain LNQ46_006015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_006020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ46_006020 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ46_006025 PF04172 LrgB-like family LNQ46_006030 PF03788 LrgA family LNQ46_006040 PF01588 Putative tRNA binding domain LNQ46_006040 PF09334 tRNA synthetases class I (M) LNQ46_006045 PF10609 NUBPL iron-transfer P-loop NTPase LNQ46_006050 PF00485 Phosphoribulokinase / Uridine kinase family LNQ46_006055 PF00692 dUTPase LNQ46_006060 PF05170 AsmA family LNQ46_006065 PF03606 C4-dicarboxylate anaerobic carrier LNQ46_006070 PF03741 Integral membrane protein TerC family LNQ46_006070 PF00571 CBS domain LNQ46_006070 PF03471 Transporter associated domain LNQ46_006075 PF00483 Nucleotidyl transferase LNQ46_006080 PF00483 Nucleotidyl transferase LNQ46_006085 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LNQ46_006085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LNQ46_006095 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LNQ46_006095 PF01502 Phosphoribosyl-AMP cyclohydrolase LNQ46_006100 PF00977 Histidine biosynthesis protein LNQ46_006105 PF00977 Histidine biosynthesis protein LNQ46_006110 PF00117 Glutamine amidotransferase class-I LNQ46_006115 PF00475 Imidazoleglycerol-phosphate dehydratase LNQ46_006120 PF00155 Aminotransferase class I and II LNQ46_006125 PF00815 Histidinol dehydrogenase LNQ46_006130 PF01634 ATP phosphoribosyltransferase LNQ46_006130 PF08029 HisG, C-terminal domain LNQ46_006140 PF01370 NAD dependent epimerase/dehydratase family LNQ46_006145 PF00043 Glutathione S-transferase, C-terminal domain LNQ46_006145 PF13417 Glutathione S-transferase, N-terminal domain LNQ46_006160 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ46_006165 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_006165 PF00571 CBS domain LNQ46_006170 PF07943 Penicillin-binding protein 5, C-terminal domain LNQ46_006170 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ46_006175 PF03313 Serine dehydratase alpha chain LNQ46_006175 PF03315 Serine dehydratase beta chain LNQ46_006185 PF00455 DeoR C terminal sensor domain LNQ46_006185 PF08220 DeoR-like helix-turn-helix domain LNQ46_006190 PF01791 DeoC/LacD family aldolase LNQ46_006195 PF01569 PAP2 superfamily LNQ46_006205 PF02080 TrkA-C domain LNQ46_006205 PF06826 Predicted Permease Membrane Region LNQ46_006210 PF00462 Glutaredoxin LNQ46_006215 PF07214 Protein of unknown function (DUF1418) LNQ46_006220 PF10722 Putative bacterial sensory transduction regulator LNQ46_006225 PF13416 Bacterial extracellular solute-binding protein LNQ46_006230 PF08402 TOBE domain LNQ46_006230 PF00005 ABC transporter LNQ46_006235 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_006240 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_006245 PF10767 Protein of unknown function (DUF2593) LNQ46_006250 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ46_006255 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_006260 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_006265 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_006270 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_006275 PF00005 ABC transporter LNQ46_006280 PF12883 Protein of unknown function (DUF3828) LNQ46_006285 PF01906 Putative heavy-metal-binding LNQ46_006290 PF01370 NAD dependent epimerase/dehydratase family LNQ46_006295 PF13460 NAD(P)H-binding LNQ46_006295 PF11066 Protein of unknown function (DUF2867) LNQ46_006300 PF01212 Beta-eliminating lyase LNQ46_006305 PF00970 Oxidoreductase FAD-binding domain LNQ46_006305 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ46_006305 PF00175 Oxidoreductase NAD-binding domain LNQ46_006310 PF03063 Prismane/CO dehydrogenase family LNQ46_006315 PF03956 Lysine exporter LysO LNQ46_006320 PF11398 Protein of unknown function (DUF2813) LNQ46_006325 PF04393 Protein of unknown function (DUF535) LNQ46_006330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ46_006335 PF02687 FtsX-like permease family LNQ46_006335 PF12704 MacB-like periplasmic core domain LNQ46_006335 PF00005 ABC transporter LNQ46_006340 PF00313 'Cold-shock' DNA-binding domain LNQ46_006345 PF02617 ATP-dependent Clp protease adaptor protein ClpS LNQ46_006350 PF00004 ATPase family associated with various cellular activities (AAA) LNQ46_006350 PF07724 AAA domain (Cdc48 subfamily) LNQ46_006350 PF17871 AAA lid domain LNQ46_006350 PF02861 Clp amino terminal domain, pathogenicity island component LNQ46_006350 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ46_006355 PF01176 Translation initiation factor 1A / IF-1 LNQ46_006360 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LNQ46_006365 PF00005 ABC transporter LNQ46_006365 PF00664 ABC transporter transmembrane region LNQ46_006370 PF00664 ABC transporter transmembrane region LNQ46_006370 PF00005 ABC transporter LNQ46_006375 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_006380 PF01037 Lrp/AsnC ligand binding domain LNQ46_006385 PF09397 Ftsk gamma domain LNQ46_006385 PF01580 FtsK/SpoIIIE family LNQ46_006385 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LNQ46_006385 PF17854 FtsK alpha domain LNQ46_006390 PF03548 Outer membrane lipoprotein carrier protein LolA LNQ46_006395 PF00004 ATPase family associated with various cellular activities (AAA) LNQ46_006395 PF16193 AAA C-terminal domain LNQ46_006395 PF12002 MgsA AAA+ ATPase C terminal LNQ46_006400 PF02403 Seryl-tRNA synthetase N-terminal domain LNQ46_006400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ46_006405 PF07690 Major Facilitator Superfamily LNQ46_006410 PF04055 Radical SAM superfamily LNQ46_006415 PF02901 Pyruvate formate lyase-like LNQ46_006415 PF01228 Glycine radical LNQ46_006420 PF01226 Formate/nitrite transporter LNQ46_006425 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LNQ46_006425 PF18381 YcaO cyclodehydratase C-terminal domain LNQ46_006430 PF00710 Asparaginase, N-terminal LNQ46_006430 PF17763 Glutaminase/Asparaginase C-terminal domain LNQ46_006435 PF00266 Aminotransferase class-V LNQ46_006440 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNQ46_006445 PF02224 Cytidylate kinase LNQ46_006450 PF00575 S1 RNA binding domain LNQ46_006455 PF00216 Bacterial DNA-binding protein LNQ46_006460 PF03772 Competence protein LNQ46_006460 PF00753 Metallo-beta-lactamase superfamily LNQ46_006465 PF00664 ABC transporter transmembrane region LNQ46_006465 PF00005 ABC transporter LNQ46_006470 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LNQ46_006475 PF07063 Domain of unknown function (DUF1338) LNQ46_006480 PF00313 'Cold-shock' DNA-binding domain LNQ46_006485 PF00313 'Cold-shock' DNA-binding domain LNQ46_006490 PF03966 Trm112p-like protein LNQ46_006495 PF02348 Cytidylyltransferase LNQ46_006500 PF01636 Phosphotransferase enzyme family LNQ46_006505 PF02698 DUF218 domain LNQ46_006510 PF13847 Methyltransferase domain LNQ46_006515 PF17193 MukF C-terminal domain LNQ46_006515 PF03882 MukF winged-helix domain LNQ46_006515 PF17192 MukF middle domain LNQ46_006520 PF04288 MukE-like family LNQ46_006525 PF04310 MukB N-terminal LNQ46_006525 PF16330 MukB hinge domain LNQ46_006530 PF01471 Putative peptidoglycan binding domain LNQ46_006530 PF03734 L,D-transpeptidase catalytic domain LNQ46_006535 PF05951 Bacterial protein of unknown function (DUF882) LNQ46_006540 PF00753 Metallo-beta-lactamase superfamily LNQ46_006545 PF00155 Aminotransferase class I and II LNQ46_006550 PF00267 Gram-negative porin LNQ46_006555 PF00152 tRNA synthetases class II (D, K and N) LNQ46_006555 PF01336 OB-fold nucleic acid binding domain LNQ46_006560 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LNQ46_006560 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LNQ46_006565 PF01433 Peptidase family M1 domain LNQ46_006565 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LNQ46_006565 PF11940 Domain of unknown function (DUF3458) Ig-like fold LNQ46_006570 PF01180 Dihydroorotate dehydrogenase LNQ46_006575 PF07126 Cell-division protein ZapC LNQ46_006580 PF03476 MOSC N-terminal beta barrel domain LNQ46_006580 PF03473 MOSC domain LNQ46_006580 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ46_006585 PF02926 THUMP domain LNQ46_006585 PF10672 S-adenosylmethionine-dependent methyltransferase LNQ46_006585 PF01170 Putative RNA methylase family UPF0020 LNQ46_006590 PF00005 ABC transporter LNQ46_006590 PF16326 ABC transporter C-terminal domain LNQ46_006590 PF12848 ABC transporter LNQ46_006595 PF04403 Paraquat-inducible protein A LNQ46_006600 PF02470 MlaD protein LNQ46_006605 PF03886 ABC-type transport auxiliary lipoprotein component LNQ46_006610 PF04957 Ribosome modulation factor LNQ46_006615 PF07977 FabA-like domain LNQ46_006620 PF13654 AAA domain LNQ46_006620 PF05362 Lon protease (S16) C-terminal proteolytic domain LNQ46_006625 PF06303 MatP N-terminal domain LNQ46_006625 PF17414 MatP C-terminal ribbon-helix-helix domain LNQ46_006630 PF01389 OmpA-like transmembrane domain LNQ46_006630 PF00691 OmpA family LNQ46_006635 PF03846 Cell division inhibitor SulA LNQ46_006640 PF04993 TfoX N-terminal domain LNQ46_006640 PF04994 TfoX C-terminal domain LNQ46_006645 PF12805 FUSC-like inner membrane protein yccS LNQ46_006650 PF03733 Inner membrane component domain LNQ46_006655 PF00580 UvrD/REP helicase N-terminal domain LNQ46_006655 PF12462 DNA helicase IV / RNA helicase N terminal LNQ46_006655 PF13361 UvrD-like helicase C-terminal domain LNQ46_006660 PF02142 MGS-like domain LNQ46_006665 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LNQ46_006670 PF13380 CoA binding domain LNQ46_006675 PF08755 Hemimethylated DNA-binding protein YccV like LNQ46_006680 PF10672 S-adenosylmethionine-dependent methyltransferase LNQ46_006680 PF17785 PUA-like domain LNQ46_006685 PF00708 Acylphosphatase LNQ46_006690 PF04358 DsrC like protein LNQ46_006700 PF00484 Carbonic anhydrase LNQ46_006705 PF03471 Transporter associated domain LNQ46_006705 PF02080 TrkA-C domain LNQ46_006705 PF00999 Sodium/hydrogen exchanger family LNQ46_006715 PF01757 Acyltransferase family LNQ46_006720 PF04349 Periplasmic glucan biosynthesis protein, MdoG LNQ46_006725 PF00535 Glycosyl transferase family 2 LNQ46_006735 PF00854 POT family LNQ46_006745 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ46_006750 PF00581 Rhodanese-like domain LNQ46_006750 PF12368 Rhodanase C-terminal LNQ46_006750 PF17773 UPF0176 acylphosphatase like domain LNQ46_006755 PF01594 AI-2E family transporter LNQ46_006760 PF00196 Bacterial regulatory proteins, luxR family LNQ46_006765 PF01266 FAD dependent oxidoreductase LNQ46_006770 PF13991 BssS protein family LNQ46_006775 PF06183 DinI-like family LNQ46_006780 PF01979 Amidohydrolase family LNQ46_006785 PF03992 Antibiotic biosynthesis monooxygenase LNQ46_006795 PF12111 Polyribonucleotide phosphorylase C terminal LNQ46_006795 PF00575 S1 RNA binding domain LNQ46_006795 PF10150 Ribonuclease E/G family LNQ46_006800 PF01479 S4 domain LNQ46_006800 PF00849 RNA pseudouridylate synthase LNQ46_006805 PF02545 Maf-like protein LNQ46_006810 PF02620 Large ribosomal RNA subunit accumulation protein YceD LNQ46_006815 PF01783 Ribosomal L32p protein family LNQ46_006820 PF02504 Fatty acid synthesis protein LNQ46_006825 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LNQ46_006825 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LNQ46_006830 PF00698 Acyl transferase domain LNQ46_006840 PF00550 Phosphopantetheine attachment site LNQ46_006845 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ46_006845 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ46_006850 PF01063 Amino-transferase class IV LNQ46_006855 PF02618 YceG-like family LNQ46_006860 PF02223 Thymidylate kinase LNQ46_006865 PF09115 DNA polymerase III, delta subunit, C terminal LNQ46_006870 PF01026 TatD related DNase LNQ46_006875 PF00367 phosphotransferase system, EIIB LNQ46_006875 PF02378 Phosphotransferase system, EIIC LNQ46_006880 PF01230 HIT domain LNQ46_006885 PF07233 Protein of unknown function (DUF1425) LNQ46_006890 PF13036 Peptidoglycan-synthase activator LpoB LNQ46_006890 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LNQ46_006895 PF01636 Phosphotransferase enzyme family LNQ46_006900 PF00933 Glycosyl hydrolase family 3 N terminal domain LNQ46_006905 PF05728 Uncharacterised protein family (UPF0227) LNQ46_006910 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_006915 PF05433 Glycine zipper 2TM domain LNQ46_006920 PF02559 CarD-like/TRCF domain LNQ46_006920 PF00270 DEAD/DEAH box helicase LNQ46_006920 PF00271 Helicase conserved C-terminal domain LNQ46_006920 PF03461 TRCF domain LNQ46_006920 PF17757 UvrB interaction domain LNQ46_006925 PF12704 MacB-like periplasmic core domain LNQ46_006925 PF02687 FtsX-like permease family LNQ46_006930 PF00005 ABC transporter LNQ46_006935 PF02687 FtsX-like permease family LNQ46_006935 PF12704 MacB-like periplasmic core domain LNQ46_006940 PF00480 ROK family LNQ46_006945 PF02146 Sir2 family LNQ46_006950 PF01546 Peptidase family M20/M25/M40 LNQ46_006950 PF07687 Peptidase dimerisation domain LNQ46_006955 PF08007 Cupin superfamily protein LNQ46_006960 PF08918 PhoQ Sensor LNQ46_006960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_006965 PF00486 Transcriptional regulatory protein, C terminal LNQ46_006965 PF00072 Response regulator receiver domain LNQ46_006975 PF08328 Adenylosuccinate lyase C-terminal LNQ46_006975 PF00206 Lyase LNQ46_006980 PF04356 Protein of unknown function (DUF489) LNQ46_006990 PF00293 NUDIX domain LNQ46_006995 PF00849 RNA pseudouridylate synthase LNQ46_007000 PF00180 Isocitrate/isopropylmalate dehydrogenase LNQ46_007005 PF03472 Autoinducer binding domain LNQ46_007005 PF00196 Bacterial regulatory proteins, luxR family LNQ46_007010 PF00765 Autoinducer synthase LNQ46_007015 PF00232 Glycosyl hydrolase family 1 LNQ46_007025 PF01432 Peptidase family M3 LNQ46_007030 PF02203 Tar ligand binding domain homologue LNQ46_007030 PF00672 HAMP domain LNQ46_007030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ46_007035 PF03390 2-hydroxycarboxylate transporter family LNQ46_007040 PF00072 Response regulator receiver domain LNQ46_007045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_007045 PF00989 PAS fold LNQ46_007045 PF17203 Single cache domain 3 LNQ46_007045 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LNQ46_007050 PF00939 Sodium:sulfate symporter transmembrane region LNQ46_007055 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LNQ46_007055 PF00413 Matrixin LNQ46_007055 PF08548 Peptidase M10 serralysin C terminal LNQ46_007060 PF02974 Protease inhibitor Inh LNQ46_007065 PF00664 ABC transporter transmembrane region LNQ46_007065 PF00005 ABC transporter LNQ46_007070 PF00529 HlyD membrane-fusion protein of T1SS LNQ46_007075 PF02321 Outer membrane efflux protein LNQ46_007090 PF02311 AraC-like ligand binding domain LNQ46_007090 PF12833 Helix-turn-helix domain LNQ46_007095 PF02562 PhoH-like protein LNQ46_007100 PF01699 Sodium/calcium exchanger protein LNQ46_007105 PF04954 Siderophore-interacting protein LNQ46_007105 PF08021 Siderophore-interacting FAD-binding domain LNQ46_007110 PF00672 HAMP domain LNQ46_007110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_007110 PF07730 Histidine kinase LNQ46_007110 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LNQ46_007120 PF02322 Cytochrome bd terminal oxidase subunit II LNQ46_007125 PF01654 Cytochrome bd terminal oxidase subunit I LNQ46_007130 PF00392 Bacterial regulatory proteins, gntR family LNQ46_007130 PF00155 Aminotransferase class I and II LNQ46_007135 PF00202 Aminotransferase class-III LNQ46_007140 PF04958 Arginine N-succinyltransferase beta subunit LNQ46_007145 PF00171 Aldehyde dehydrogenase family LNQ46_007150 PF04996 Succinylarginine dihydrolase LNQ46_007160 PF00267 Gram-negative porin LNQ46_007170 PF01979 Amidohydrolase family LNQ46_007175 PF00392 Bacterial regulatory proteins, gntR family LNQ46_007175 PF07702 UTRA domain LNQ46_007180 PF01979 Amidohydrolase family LNQ46_007185 PF05962 HutD LNQ46_007190 PF03466 LysR substrate binding domain LNQ46_007190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_007200 PF03824 High-affinity nickel-transport protein LNQ46_007205 PF00708 Acylphosphatase LNQ46_007205 PF17788 HypF Kae1-like domain LNQ46_007205 PF01300 Telomere recombination LNQ46_007205 PF07503 HypF finger LNQ46_007210 PF01568 Molydopterin dinucleotide binding domain LNQ46_007210 PF00384 Molybdopterin oxidoreductase LNQ46_007210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ46_007215 PF13247 4Fe-4S dicluster domain LNQ46_007215 PF12800 4Fe-4S binding domain LNQ46_007220 PF01750 Hydrogenase maturation protease LNQ46_007225 PF07450 Formate hydrogenlyase maturation protein HycH LNQ46_007230 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LNQ46_007235 PF12838 4Fe-4S dicluster domain LNQ46_007240 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LNQ46_007240 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LNQ46_007240 PF00374 Nickel-dependent hydrogenase LNQ46_007245 PF00146 NADH dehydrogenase LNQ46_007250 PF00361 Proton-conducting membrane transporter LNQ46_007255 PF13247 4Fe-4S dicluster domain LNQ46_007260 PF11046 Transcriptional repressor of hyc and hyp operons LNQ46_007265 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LNQ46_007270 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNQ46_007275 PF01455 HupF/HypC family LNQ46_007280 PF01924 Hydrogenase formation hypA family LNQ46_007285 PF02769 AIR synthase related protein, C-terminal domain LNQ46_007285 PF00586 AIR synthase related protein, N-terminal domain LNQ46_007290 PF01590 GAF domain LNQ46_007290 PF00158 Sigma-54 interaction domain LNQ46_007290 PF02954 Bacterial regulatory protein, Fis family LNQ46_007300 PF13954 PapC N-terminal domain LNQ46_007300 PF00577 Outer membrane usher protein LNQ46_007305 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ46_007305 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ46_007320 PF12833 Helix-turn-helix domain LNQ46_007325 PF06071 Protein of unknown function (DUF933) LNQ46_007325 PF01926 50S ribosome-binding GTPase LNQ46_007335 PF01195 Peptidyl-tRNA hydrolase LNQ46_007340 PF10762 Protein of unknown function (DUF2583) LNQ46_007345 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LNQ46_007345 PF14572 Phosphoribosyl synthetase-associated domain LNQ46_007350 PF00288 GHMP kinases N terminal domain LNQ46_007350 PF08544 GHMP kinases C terminal LNQ46_007355 PF03550 Outer membrane lipoprotein LolB LNQ46_007360 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LNQ46_007360 PF01488 Shikimate / quinate 5-dehydrogenase LNQ46_007360 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LNQ46_007365 PF03462 PCRF domain LNQ46_007365 PF00472 RF-1 domain LNQ46_007370 PF13847 Methyltransferase domain LNQ46_007370 PF17827 PrmC N-terminal domain LNQ46_007375 PF04247 Invasion gene expression up-regulator, SirB LNQ46_007380 PF13369 Transglutaminase-like superfamily LNQ46_007385 PF00793 DAHP synthetase I family LNQ46_007390 PF00916 Sulfate permease family LNQ46_007390 PF01740 STAS domain LNQ46_007395 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_007405 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ46_007415 PF00854 POT family LNQ46_007420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ46_007425 PF02811 PHP domain LNQ46_007430 PF02613 Nitrate reductase delta subunit LNQ46_007435 PF07273 Protein of unknown function (DUF1439) LNQ46_007445 PF07690 Major Facilitator Superfamily LNQ46_007450 PF13302 Acetyltransferase (GNAT) domain LNQ46_007455 PF04337 Protein of unknown function, DUF480 LNQ46_007460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ46_007465 PF03023 Lipid II flippase MurJ LNQ46_007470 PF08479 POTRA domain, ShlB-type LNQ46_007470 PF17287 POTRA domain LNQ46_007470 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ46_007475 PF13332 Hemagglutinin repeat LNQ46_007475 PF05860 haemagglutination activity domain LNQ46_007485 PF00750 tRNA synthetases class I (R) LNQ46_007485 PF05746 DALR anticodon binding domain LNQ46_007485 PF03485 Arginyl tRNA synthetase N terminal domain LNQ46_007490 PF06185 YecM protein LNQ46_007495 PF03932 CutC family LNQ46_007500 PF08003 Protein of unknown function (DUF1698) LNQ46_007505 PF13649 Methyltransferase domain LNQ46_007510 PF01124 MAPEG family LNQ46_007515 PF01904 Protein of unknown function DUF72 LNQ46_007525 PF01336 OB-fold nucleic acid binding domain LNQ46_007525 PF00152 tRNA synthetases class II (D, K and N) LNQ46_007525 PF02938 GAD domain LNQ46_007530 PF00293 NUDIX domain LNQ46_007535 PF01709 Transcriptional regulator LNQ46_007540 PF02075 Crossover junction endodeoxyribonuclease RuvC LNQ46_007545 PF07499 RuvA, C-terminal domain LNQ46_007545 PF01330 RuvA N terminal domain LNQ46_007550 PF17864 RuvB AAA lid domain LNQ46_007550 PF05491 RuvB C-terminal winged helix domain LNQ46_007550 PF05496 Holliday junction DNA helicase RuvB P-loop domain LNQ46_007555 PF00854 POT family LNQ46_007560 PF00950 ABC 3 transport family LNQ46_007565 PF00005 ABC transporter LNQ46_007570 PF01297 Zinc-uptake complex component A periplasmic LNQ46_007575 PF08525 Opacity-associated protein A N-terminal motif LNQ46_007575 PF01551 Peptidase family M23 LNQ46_007575 PF01476 LysM domain LNQ46_007580 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ46_007585 PF00224 Pyruvate kinase, barrel domain LNQ46_007585 PF02887 Pyruvate kinase, alpha/beta domain LNQ46_007590 PF01418 Helix-turn-helix domain, rpiR family LNQ46_007590 PF01380 SIS domain LNQ46_007595 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LNQ46_007595 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LNQ46_007600 PF01081 KDPG and KHG aldolase LNQ46_007605 PF00893 Small Multidrug Resistance protein LNQ46_007610 PF00893 Small Multidrug Resistance protein LNQ46_007615 PF01042 Endoribonuclease L-PSP LNQ46_007620 PF13307 Helicase C-terminal domain LNQ46_007620 PF04851 Type III restriction enzyme, res subunit LNQ46_007625 PF00814 Glycoprotease family LNQ46_007630 PF03843 Outer membrane lipoprotein Slp family LNQ46_007635 PF00501 AMP-binding enzyme LNQ46_007635 PF13193 AMP-binding enzyme C-terminal domain LNQ46_007640 PF00570 HRDC domain LNQ46_007640 PF01612 3'-5' exonuclease LNQ46_007645 PF03776 Septum formation topological specificity factor MinE LNQ46_007650 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNQ46_007655 PF03775 Septum formation inhibitor MinC, C-terminal domain LNQ46_007655 PF05209 Septum formation inhibitor MinC, N-terminal domain LNQ46_007660 PF05166 YcgL domain LNQ46_007665 PF01557 Fumarylacetoacetate (FAA) hydrolase family LNQ46_007670 PF03692 Putative zinc- or iron-chelating domain LNQ46_007685 PF02600 Disulfide bond formation protein DsbB LNQ46_007690 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LNQ46_007695 PF07840 FadR C-terminal domain LNQ46_007695 PF00392 Bacterial regulatory proteins, gntR family LNQ46_007700 PF04293 SpoVR like protein LNQ46_007705 PF01266 FAD dependent oxidoreductase LNQ46_007710 PF00842 Alanine racemase, C-terminal domain LNQ46_007710 PF01168 Alanine racemase, N-terminal domain LNQ46_007715 PF07690 Major Facilitator Superfamily LNQ46_007725 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_007725 PF00563 EAL domain LNQ46_007725 PF13426 PAS domain LNQ46_007730 PF03466 LysR substrate binding domain LNQ46_007730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_007735 PF03306 Alpha-acetolactate decarboxylase LNQ46_007740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ46_007740 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ46_007740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ46_007745 PF04285 Protein of unknown function (DUF444) LNQ46_007750 PF08298 PrkA AAA domain LNQ46_007750 PF06798 PrkA serine protein kinase C-terminal domain LNQ46_007760 PF06629 MltA-interacting protein MipA LNQ46_007765 PF00884 Sulfatase LNQ46_007770 PF01263 Aldose 1-epimerase LNQ46_007775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LNQ46_007775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LNQ46_007780 PF01641 SelR domain LNQ46_007785 PF07023 Protein of unknown function (DUF1315) LNQ46_007790 PF00857 Isochorismatase family LNQ46_007795 PF17763 Glutaminase/Asparaginase C-terminal domain LNQ46_007795 PF00710 Asparaginase, N-terminal LNQ46_007800 PF01343 Peptidase family S49 LNQ46_007805 PF00881 Nitroreductase family LNQ46_007810 PF00586 AIR synthase related protein, N-terminal domain LNQ46_007810 PF02769 AIR synthase related protein, C-terminal domain LNQ46_007815 PF01131 DNA topoisomerase LNQ46_007815 PF01751 Toprim domain LNQ46_007820 PF07383 Protein of unknown function (DUF1496) LNQ46_007825 PF00293 NUDIX domain LNQ46_007830 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ46_007840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_007840 PF03466 LysR substrate binding domain LNQ46_007860 PF01842 ACT domain LNQ46_007860 PF00551 Formyl transferase LNQ46_007865 PF02810 SEC-C motif LNQ46_007870 PF01734 Patatin-like phospholipase LNQ46_007875 PF00072 Response regulator receiver domain LNQ46_007880 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNQ46_007880 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNQ46_007880 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNQ46_007885 PF00816 H-NS histone family LNQ46_007890 PF00265 Thymidine kinase LNQ46_007895 PF00171 Aldehyde dehydrogenase family LNQ46_007895 PF00465 Iron-containing alcohol dehydrogenase LNQ46_007905 PF01914 MarC family integral membrane protein LNQ46_007910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ46_007915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ46_007920 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_007925 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_007925 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ46_007930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ46_007930 PF00005 ABC transporter LNQ46_007935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ46_007935 PF00005 ABC transporter LNQ46_007940 PF04269 Protein of unknown function, DUF440 LNQ46_007945 PF13091 PLD-like domain LNQ46_007945 PF13396 Phospholipase_D-nuclease N-terminal LNQ46_007965 PF03795 YCII-related domain LNQ46_007980 PF00486 Transcriptional regulatory protein, C terminal LNQ46_007990 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ46_007990 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ46_007995 PF00577 Outer membrane usher protein LNQ46_007995 PF13954 PapC N-terminal domain LNQ46_007995 PF13953 PapC C-terminal domain LNQ46_008015 PF03544 Gram-negative bacterial TonB protein C-terminal LNQ46_008020 PF03061 Thioesterase superfamily LNQ46_008025 PF04279 Intracellular septation protein A LNQ46_008030 PF01740 STAS domain LNQ46_008030 PF00916 Sulfate permease family LNQ46_008040 PF03692 Putative zinc- or iron-chelating domain LNQ46_008045 PF03922 OmpW family LNQ46_008055 PF00290 Tryptophan synthase alpha chain LNQ46_008060 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_008065 PF00218 Indole-3-glycerol phosphate synthase LNQ46_008065 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LNQ46_008070 PF00591 Glycosyl transferase family, a/b domain LNQ46_008070 PF02885 Glycosyl transferase family, helical bundle domain LNQ46_008075 PF00117 Glutamine amidotransferase class-I LNQ46_008080 PF00425 chorismate binding enzyme LNQ46_008080 PF04715 Anthranilate synthase component I, N terminal region LNQ46_008085 PF02811 PHP domain LNQ46_008090 PF01300 Telomere recombination LNQ46_008095 PF00849 RNA pseudouridylate synthase LNQ46_008095 PF01479 S4 domain LNQ46_008100 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LNQ46_008105 PF00106 short chain dehydrogenase LNQ46_008110 PF01343 Peptidase family S49 LNQ46_008110 PF08496 Peptidase family S49 N-terminal LNQ46_008115 PF10692 Protein of unknown function (DUF2498) LNQ46_008120 PF08272 Topoisomerase I zinc-ribbon-like LNQ46_008120 PF01751 Toprim domain LNQ46_008120 PF01131 DNA topoisomerase LNQ46_008120 PF01396 Topoisomerase DNA binding C4 zinc finger LNQ46_008125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_008125 PF03466 LysR substrate binding domain LNQ46_008150 PF00330 Aconitase family (aconitate hydratase) LNQ46_008150 PF00694 Aconitase C-terminal domain LNQ46_008155 PF00925 GTP cyclohydrolase II LNQ46_008160 PF01569 PAP2 superfamily LNQ46_008165 PF06305 Lipopolysaccharide assembly protein A domain LNQ46_008170 PF18073 Rubredoxin metal binding domain LNQ46_008180 PF07338 Protein of unknown function (DUF1471) LNQ46_008185 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LNQ46_008190 PF01253 Translation initiation factor SUI1 LNQ46_008195 PF05433 Glycine zipper 2TM domain LNQ46_008200 PF00923 Transaldolase/Fructose-6-phosphate aldolase LNQ46_008205 PF08447 PAS fold LNQ46_008205 PF08448 PAS fold LNQ46_008205 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_008205 PF05231 MASE1 LNQ46_008205 PF13426 PAS domain LNQ46_008205 PF00563 EAL domain LNQ46_008210 PF00575 S1 RNA binding domain LNQ46_008210 PF00773 RNB domain LNQ46_008210 PF08206 Ribonuclease B OB domain LNQ46_008215 PF00730 HhH-GPD superfamily base excision DNA repair protein LNQ46_008215 PF00633 Helix-hairpin-helix motif LNQ46_008215 PF10576 Iron-sulfur binding domain of endonuclease III LNQ46_008220 PF02508 Rnf-Nqr subunit, membrane protein LNQ46_008225 PF04205 FMN-binding domain LNQ46_008230 PF03116 NQR2, RnfD, RnfE family LNQ46_008235 PF12833 Helix-turn-helix domain LNQ46_008235 PF06445 GyrI-like small molecule binding domain LNQ46_008240 PF13375 RnfC Barrel sandwich hybrid domain LNQ46_008240 PF13237 4Fe-4S dicluster domain LNQ46_008240 PF10531 SLBB domain LNQ46_008240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNQ46_008245 PF04060 Putative Fe-S cluster LNQ46_008250 PF02508 Rnf-Nqr subunit, membrane protein LNQ46_008255 PF10754 Protein of unknown function (DUF2569) LNQ46_008260 PF01268 Formate--tetrahydrofolate ligase LNQ46_008265 PF09313 Domain of unknown function (DUF1971) LNQ46_008265 PF03848 Tellurite resistance protein TehB LNQ46_008270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LNQ46_008270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ46_008275 PF13593 SBF-like CPA transporter family (DUF4137) LNQ46_008280 PF00962 Adenosine/AMP deaminase LNQ46_008285 PF06097 Bacterial protein of unknown function (DUF945) LNQ46_008290 PF01238 Phosphomannose isomerase type I LNQ46_008295 PF00206 Lyase LNQ46_008295 PF10415 Fumarase C C-terminus LNQ46_008300 PF05472 DNA replication terminus site-binding protein (Ter protein) LNQ46_008305 PF00480 ROK family LNQ46_008315 PF00654 Voltage gated chloride channel LNQ46_008320 PF06649 Protein of unknown function (DUF1161) LNQ46_008325 PF06932 Protein of unknown function (DUF1283) LNQ46_008330 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LNQ46_008335 PF00106 short chain dehydrogenase LNQ46_008340 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ46_008360 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LNQ46_008360 PF01048 Phosphorylase superfamily LNQ46_008400 PF13419 Haloacid dehalogenase-like hydrolase LNQ46_008410 PF06445 GyrI-like small molecule binding domain LNQ46_008415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LNQ46_008415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LNQ46_008420 PF00027 Cyclic nucleotide-binding domain LNQ46_008420 PF13545 Crp-like helix-turn-helix domain LNQ46_008425 PF00582 Universal stress protein family LNQ46_008435 PF00455 DeoR C terminal sensor domain LNQ46_008435 PF08220 DeoR-like helix-turn-helix domain LNQ46_008440 PF03611 PTS system sugar-specific permease component LNQ46_008445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ46_008450 PF00596 Class II Aldolase and Adducin N-terminal domain LNQ46_008455 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LNQ46_008460 PF01261 Xylose isomerase-like TIM barrel LNQ46_008465 PF02233 NAD(P) transhydrogenase beta subunit LNQ46_008470 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LNQ46_008470 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LNQ46_008470 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LNQ46_008475 PF07338 Protein of unknown function (DUF1471) LNQ46_008480 PF13520 Amino acid permease LNQ46_008490 PF00072 Response regulator receiver domain LNQ46_008490 PF00486 Transcriptional regulatory protein, C terminal LNQ46_008495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_008495 PF00672 HAMP domain LNQ46_008495 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_008500 PF00080 Copper/zinc superoxide dismutase (SODC) LNQ46_008510 PF12833 Helix-turn-helix domain LNQ46_008515 PF01161 Phosphatidylethanolamine-binding protein LNQ46_008525 PF00089 Trypsin LNQ46_008530 PF00270 DEAD/DEAH box helicase LNQ46_008530 PF11898 Domain of unknown function (DUF3418) LNQ46_008530 PF00271 Helicase conserved C-terminal domain LNQ46_008530 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LNQ46_008530 PF04408 Helicase associated domain (HA2) LNQ46_008535 PF02525 Flavodoxin-like fold LNQ46_008540 PF07027 Protein of unknown function (DUF1318) LNQ46_008545 PF13617 YnbE-like lipoprotein LNQ46_008555 PF11739 Dicarboxylate transport LNQ46_008560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ46_008560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ46_008565 PF03724 META domain LNQ46_008570 PF03891 Domain of unknown function (DUF333) LNQ46_008575 PF02308 MgtC family LNQ46_008580 PF00893 Small Multidrug Resistance protein LNQ46_008585 PF10371 Domain of unknown function LNQ46_008585 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LNQ46_008585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ46_008585 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LNQ46_008585 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LNQ46_008590 PF01171 PP-loop family LNQ46_008595 PF01544 CorA-like Mg2+ transporter protein LNQ46_008600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ46_008605 PF00246 Zinc carboxypeptidase LNQ46_008610 PF13378 Enolase C-terminal domain-like LNQ46_008610 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LNQ46_008615 PF08534 Redoxin LNQ46_008620 PF18024 Helix-turn-helix domain LNQ46_008620 PF00158 Sigma-54 interaction domain LNQ46_008625 PF09722 Protein of unknown function (DUF2384) LNQ46_008630 PF08808 RES domain LNQ46_008635 PF05128 Domain of unknown function (DUF697) LNQ46_008640 PF04317 YcjX-like family, DUF463 LNQ46_008645 PF09584 Phage shock protein PspD (Phageshock_PspD) LNQ46_008650 PF04024 PspC domain LNQ46_008655 PF06667 Phage shock protein B LNQ46_008660 PF04012 PspA/IM30 family LNQ46_008665 PF02954 Bacterial regulatory protein, Fis family LNQ46_008665 PF00158 Sigma-54 interaction domain LNQ46_008675 PF02917 Pertussis toxin, subunit 1 LNQ46_008680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ46_008685 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_008690 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ46_008690 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_008695 PF00005 ABC transporter LNQ46_008695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ46_008700 PF00005 ABC transporter LNQ46_008710 PF00854 POT family LNQ46_008720 PF00226 DnaJ domain LNQ46_008720 PF01556 DnaJ C terminal domain LNQ46_008730 PF04893 Yip1 domain LNQ46_008740 PF11656 YjbD family (DUF3811) LNQ46_008745 PF00043 Glutathione S-transferase, C-terminal domain LNQ46_008745 PF02798 Glutathione S-transferase, N-terminal domain LNQ46_008750 PF08543 Phosphomethylpyrimidine kinase LNQ46_008755 PF00579 tRNA synthetases class I (W and Y) LNQ46_008755 PF01479 S4 domain LNQ46_008760 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LNQ46_008760 PF01243 Pyridoxamine 5'-phosphate oxidase LNQ46_008765 PF03702 Anhydro-N-acetylmuramic acid kinase LNQ46_008770 PF05433 Glycine zipper 2TM domain LNQ46_008775 PF01047 MarR family LNQ46_008785 PF00248 Aldo/keto reductase family LNQ46_008790 PF06945 Protein of unknown function (DUF1289) LNQ46_008795 PF08019 Phosphoethanolamine transferase EptA/EptB LNQ46_008795 PF00884 Sulfatase LNQ46_008800 PF16925 Tetracyclin repressor-like, C-terminal domain LNQ46_008800 PF00440 Bacterial regulatory proteins, tetR family LNQ46_008805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNQ46_008810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNQ46_008815 PF00929 Exonuclease LNQ46_008820 PF00462 Glutaredoxin LNQ46_008825 PF00877 NlpC/P60 family LNQ46_008830 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNQ46_008830 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNQ46_008840 PF00356 Bacterial regulatory proteins, lacI family LNQ46_008845 PF03466 LysR substrate binding domain LNQ46_008845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_008850 PF07690 Major Facilitator Superfamily LNQ46_008860 PF00677 Lumazine binding domain LNQ46_008865 PF01554 MatE LNQ46_008885 PF00224 Pyruvate kinase, barrel domain LNQ46_008885 PF02887 Pyruvate kinase, alpha/beta domain LNQ46_008890 PF04728 Lipoprotein leucine-zipper LNQ46_008895 PF03734 L,D-transpeptidase catalytic domain LNQ46_008895 PF01476 LysM domain LNQ46_008895 PF17969 L,D-transpeptidase C-terminal domain LNQ46_008900 PF02657 Fe-S metabolism associated domain LNQ46_008905 PF00266 Aminotransferase class-V LNQ46_008910 PF01458 Uncharacterized protein family (UPF0051) LNQ46_008915 PF00005 ABC transporter LNQ46_008920 PF01458 Uncharacterized protein family (UPF0051) LNQ46_008925 PF01521 Iron-sulphur cluster biosynthesis LNQ46_008930 PF03061 Thioesterase superfamily LNQ46_008935 PF02913 FAD linked oxidases, C-terminal domain LNQ46_008935 PF13183 4Fe-4S dicluster domain LNQ46_008935 PF01565 FAD binding domain LNQ46_008940 PF01594 AI-2E family transporter LNQ46_008950 PF00391 PEP-utilising enzyme, mobile domain LNQ46_008950 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ46_008950 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LNQ46_008955 PF03618 Kinase/pyrophosphorylase LNQ46_008960 PF00793 DAHP synthetase I family LNQ46_008965 PF10636 Hemin uptake protein hemP LNQ46_008970 PF07715 TonB-dependent Receptor Plug Domain LNQ46_008970 PF00593 TonB dependent receptor LNQ46_008975 PF05171 Haemin-degrading HemS.ChuX domain LNQ46_008980 PF01497 Periplasmic binding protein LNQ46_008985 PF01032 FecCD transport family LNQ46_008990 PF00005 ABC transporter LNQ46_008995 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LNQ46_009000 PF10437 Bacterial lipoate protein ligase C-terminus LNQ46_009000 PF03099 Biotin/lipoate A/B protein ligase family LNQ46_009005 PF00877 NlpC/P60 family LNQ46_009015 PF00892 EamA-like transporter family LNQ46_009020 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LNQ46_009025 PF01522 Polysaccharide deacetylase LNQ46_009030 PF01370 NAD dependent epimerase/dehydratase family LNQ46_009030 PF02911 Formyl transferase, C-terminal domain LNQ46_009030 PF00551 Formyl transferase LNQ46_009035 PF00535 Glycosyl transferase family 2 LNQ46_009040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ46_009045 PF00005 ABC transporter LNQ46_009050 PF01032 FecCD transport family LNQ46_009055 PF00589 Phage integrase family LNQ46_009055 PF02899 Phage integrase, N-terminal SAM-like domain LNQ46_009085 PF04606 Ogr/Delta-like zinc finger LNQ46_009095 PF00216 Bacterial DNA-binding protein LNQ46_009100 PF03483 B3/4 domain LNQ46_009100 PF03484 tRNA synthetase B5 domain LNQ46_009100 PF03147 Ferredoxin-fold anticodon binding domain LNQ46_009100 PF01588 Putative tRNA binding domain LNQ46_009100 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LNQ46_009105 PF01409 tRNA synthetases class II core domain (F) LNQ46_009105 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LNQ46_009110 PF00453 Ribosomal protein L20 LNQ46_009115 PF01632 Ribosomal protein L35 LNQ46_009120 PF05198 Translation initiation factor IF-3, N-terminal domain LNQ46_009120 PF00707 Translation initiation factor IF-3, C-terminal domain LNQ46_009125 PF03129 Anticodon binding domain LNQ46_009125 PF02824 TGS domain LNQ46_009125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ46_009125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ46_009155 PF01914 MarC family integral membrane protein LNQ46_009160 PF01464 Transglycosylase SLT domain LNQ46_009165 PF01297 Zinc-uptake complex component A periplasmic LNQ46_009170 PF00005 ABC transporter LNQ46_009175 PF00950 ABC 3 transport family LNQ46_009180 PF00950 ABC 3 transport family LNQ46_009185 PF03881 Fructosamine kinase LNQ46_009190 PF14002 YniB-like protein LNQ46_009195 PF13419 Haloacid dehalogenase-like hydrolase LNQ46_009200 PF04307 LexA-binding, inner membrane-associated putative hydrolase LNQ46_009205 PF00375 Sodium:dicarboxylate symporter family LNQ46_009210 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ46_009215 PF09339 IclR helix-turn-helix domain LNQ46_009215 PF01614 Bacterial transcriptional regulator LNQ46_009220 PF07690 Major Facilitator Superfamily LNQ46_009230 PF01435 Peptidase family M48 LNQ46_009235 PF11818 C-terminal domain of tail specific protease (DUF3340) LNQ46_009235 PF00595 PDZ domain LNQ46_009235 PF03572 Peptidase family S41 LNQ46_009235 PF17804 Tail specific protease N-terminal domain LNQ46_009240 PF17516 ProQ C-terminal domain LNQ46_009240 PF04352 ProQ/FINO family LNQ46_009245 PF13185 GAF domain LNQ46_009250 PF04403 Paraquat-inducible protein A LNQ46_009255 PF02470 MlaD protein LNQ46_009260 PF01590 GAF domain LNQ46_009260 PF00563 EAL domain LNQ46_009260 PF00360 Phytochrome region LNQ46_009260 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_009265 PF07351 Protein of unknown function (DUF1480) LNQ46_009290 PF05643 Putative bacterial lipoprotein (DUF799) LNQ46_009300 PF03783 Curli production assembly/transport component CsgG LNQ46_009305 PF10753 Toxin GhoT_OrtT LNQ46_009325 PF00144 Beta-lactamase LNQ46_009335 PF10709 Protein of unknown function (DUF2511) LNQ46_009340 PF05425 Copper resistance protein D LNQ46_009345 PF04234 CopC domain LNQ46_009350 PF00210 Ferritin-like domain LNQ46_009355 PF06440 DNA polymerase III, theta subunit LNQ46_009360 PF00561 alpha/beta hydrolase fold LNQ46_009365 PF00929 Exonuclease LNQ46_009370 PF00326 Prolyl oligopeptidase family LNQ46_009370 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LNQ46_009375 PF13995 YebF-like protein LNQ46_009380 PF04266 ASCH domain LNQ46_009385 PF07130 YebG protein LNQ46_009390 PF03880 DbpA RNA binding domain LNQ46_009390 PF00271 Helicase conserved C-terminal domain LNQ46_009390 PF00270 DEAD/DEAH box helicase LNQ46_009395 PF02222 ATP-grasp domain LNQ46_009400 PF03701 Uncharacterised protein family (UPF0181) LNQ46_009405 PF04715 Anthranilate synthase component I, N terminal region LNQ46_009405 PF00425 chorismate binding enzyme LNQ46_009410 PF00293 NUDIX domain LNQ46_009415 PF03313 Serine dehydratase alpha chain LNQ46_009415 PF03315 Serine dehydratase beta chain LNQ46_009420 PF03471 Transporter associated domain LNQ46_009420 PF03741 Integral membrane protein TerC family LNQ46_009425 PF03610 PTS system fructose IIA component LNQ46_009425 PF03830 PTS system sorbose subfamily IIB component LNQ46_009430 PF03609 PTS system sorbose-specific iic component LNQ46_009435 PF03613 PTS system mannose/fructose/sorbose family IID component LNQ46_009440 PF06173 Protein of unknown function (DUF986) LNQ46_009445 PF02659 Putative manganese efflux pump LNQ46_009450 PF02441 Flavoprotein LNQ46_009465 PF02770 Acyl-CoA dehydrogenase, middle domain LNQ46_009465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNQ46_009465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNQ46_009475 PF05199 GMC oxidoreductase LNQ46_009475 PF00732 GMC oxidoreductase LNQ46_009480 PF00501 AMP-binding enzyme LNQ46_009480 PF13193 AMP-binding enzyme C-terminal domain LNQ46_009480 PF00668 Condensation domain LNQ46_009480 PF00550 Phosphopantetheine attachment site LNQ46_009485 PF07690 Major Facilitator Superfamily LNQ46_009505 PF13847 Methyltransferase domain LNQ46_009510 PF03717 Penicillin-binding Protein dimerisation domain LNQ46_009510 PF00905 Penicillin binding protein transpeptidase domain LNQ46_009515 PF02578 Multi-copper polyphenol oxidoreductase laccase LNQ46_009520 PF00313 'Cold-shock' DNA-binding domain LNQ46_009525 PF10736 Protein of unknown function (DUF2627) LNQ46_009530 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LNQ46_009535 PF00324 Amino acid permease LNQ46_009550 PF13974 YebO-like protein LNQ46_009555 PF13998 MgrB protein LNQ46_009560 PF13996 YobH-like protein LNQ46_009565 PF10964 Protein of unknown function (DUF2766) LNQ46_009570 PF12833 Helix-turn-helix domain LNQ46_009585 PF13520 Amino acid permease LNQ46_009590 PF00664 ABC transporter transmembrane region LNQ46_009590 PF00005 ABC transporter LNQ46_009600 PF00563 EAL domain LNQ46_009600 PF01590 GAF domain LNQ46_009600 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_009600 PF00360 Phytochrome region LNQ46_009605 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ46_009615 PF06411 HdeA/HdeB family LNQ46_009620 PF07478 D-ala D-ala ligase C-terminus LNQ46_009620 PF01820 D-ala D-ala ligase N-terminus LNQ46_009635 PF08241 Methyltransferase domain LNQ46_009640 PF00313 'Cold-shock' DNA-binding domain LNQ46_009645 PF00313 'Cold-shock' DNA-binding domain LNQ46_009650 PF00313 'Cold-shock' DNA-binding domain LNQ46_009660 PF04794 YdjC-like protein LNQ46_009665 PF12833 Helix-turn-helix domain LNQ46_009665 PF07883 Cupin domain LNQ46_009670 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LNQ46_009675 PF00232 Glycosyl hydrolase family 1 LNQ46_009680 PF02378 Phosphotransferase system, EIIC LNQ46_009685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ46_009690 PF01479 S4 domain LNQ46_009690 PF00849 RNA pseudouridylate synthase LNQ46_009705 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LNQ46_009710 PF03553 Na+/H+ antiporter family LNQ46_009720 PF13520 Amino acid permease LNQ46_009735 PF00849 RNA pseudouridylate synthase LNQ46_009740 PF00282 Pyridoxal-dependent decarboxylase conserved domain LNQ46_009745 PF13520 Amino acid permease LNQ46_009750 PF04960 Glutaminase LNQ46_009780 PF13673 Acetyltransferase (GNAT) domain LNQ46_009790 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LNQ46_009790 PF00034 Cytochrome c LNQ46_009800 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_009805 PF00005 ABC transporter LNQ46_009815 PF00672 HAMP domain LNQ46_009815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ46_009815 PF02203 Tar ligand binding domain homologue LNQ46_009820 PF13333 Integrase core domain LNQ46_009820 PF00665 Integrase core domain LNQ46_009820 PF13276 HTH-like domain LNQ46_009880 PF02086 D12 class N6 adenine-specific DNA methyltransferase LNQ46_009885 PF05840 Bacteriophage replication gene A protein (GPA) LNQ46_009890 PF05840 Bacteriophage replication gene A protein (GPA) LNQ46_009950 PF01066 CDP-alcohol phosphatidyltransferase LNQ46_009955 PF01541 GIY-YIG catalytic domain LNQ46_009955 PF02151 UvrB/uvrC motif LNQ46_009955 PF08459 UvrC Helix-hairpin-helix N-terminal LNQ46_009960 PF00196 Bacterial regulatory proteins, luxR family LNQ46_009960 PF00072 Response regulator receiver domain LNQ46_009965 PF10769 Protein of unknown function (DUF2594) LNQ46_009985 PF00324 Amino acid permease LNQ46_009990 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ46_009990 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ46_009990 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ46_009995 PF13520 Amino acid permease LNQ46_010000 PF18500 CadC C-terminal domain 1 LNQ46_010000 PF00486 Transcriptional regulatory protein, C terminal LNQ46_010005 PF00474 Sodium:solute symporter family LNQ46_010010 PF01619 Proline dehydrogenase LNQ46_010010 PF00171 Aldehyde dehydrogenase family LNQ46_010010 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LNQ46_010010 PF14850 DNA-binding domain of Proline dehydrogenase LNQ46_010015 PF00005 ABC transporter LNQ46_010020 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_010025 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_010030 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_010035 PF02899 Phage integrase, N-terminal SAM-like domain LNQ46_010040 PF04542 Sigma-70 region 2 LNQ46_010040 PF04539 Sigma-70 region 3 LNQ46_010040 PF04545 Sigma-70, region 4 LNQ46_010045 PF00700 Bacterial flagellin C-terminal helical region LNQ46_010045 PF00669 Bacterial flagellin N-terminal helical region LNQ46_010045 PF08884 Flagellin D3 domain LNQ46_010050 PF00700 Bacterial flagellin C-terminal helical region LNQ46_010050 PF08884 Flagellin D3 domain LNQ46_010050 PF00669 Bacterial flagellin N-terminal helical region LNQ46_010055 PF07196 Flagellin hook IN motif LNQ46_010055 PF07195 Flagellar hook-associated protein 2 C-terminus LNQ46_010055 PF02465 Flagellar hook-associated protein 2 N-terminus LNQ46_010060 PF02561 Flagellar protein FliS LNQ46_010065 PF05400 Flagellar protein FliT LNQ46_010070 PF12833 Helix-turn-helix domain LNQ46_010075 PF01966 HD domain LNQ46_010080 PF07885 Ion channel LNQ46_010080 PF02254 TrkA-N domain LNQ46_010085 PF01223 DNA/RNA non-specific endonuclease LNQ46_010095 PF02049 Flagellar hook-basal body complex protein FliE LNQ46_010100 PF01514 Secretory protein of YscJ/FliF family LNQ46_010100 PF08345 Flagellar M-ring protein C-terminal LNQ46_010105 PF01706 FliG C-terminal domain LNQ46_010105 PF14841 FliG middle domain LNQ46_010105 PF14842 FliG N-terminal domain LNQ46_010110 PF02108 Flagellar assembly protein FliH LNQ46_010115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ46_010115 PF18269 T3SS EscN ATPase C-terminal domain LNQ46_010120 PF02050 Flagellar FliJ protein LNQ46_010125 PF02120 Flagellar hook-length control protein FliK LNQ46_010130 PF03748 Flagellar basal body-associated protein FliL LNQ46_010135 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ46_010135 PF02154 Flagellar motor switch protein FliM LNQ46_010140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ46_010140 PF16973 Flagellar motor switch protein FliN N-terminal LNQ46_010145 PF04347 Flagellar biosynthesis protein, FliO LNQ46_010150 PF00813 FliP family LNQ46_010155 PF01313 Bacterial export proteins, family 3 LNQ46_010160 PF01311 Bacterial export proteins, family 1 LNQ46_010165 PF00669 Bacterial flagellin N-terminal helical region LNQ46_010170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ46_010170 PF00460 Flagella basal body rod protein LNQ46_010175 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LNQ46_010175 PF10135 Rod binding protein LNQ46_010180 PF02119 Flagellar P-ring protein LNQ46_010185 PF02107 Flagellar L-ring protein LNQ46_010190 PF00460 Flagella basal body rod protein LNQ46_010190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ46_010195 PF00460 Flagella basal body rod protein LNQ46_010195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ46_010200 PF07559 Flagellar basal body protein FlaE LNQ46_010200 PF00460 Flagella basal body rod protein LNQ46_010200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ46_010205 PF13860 FlgD Ig-like domain LNQ46_010205 PF03963 Flagellar hook capping protein - N-terminal region LNQ46_010205 PF13861 FlgD Tudor-like domain LNQ46_010210 PF00460 Flagella basal body rod protein LNQ46_010210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ46_010215 PF00460 Flagella basal body rod protein LNQ46_010220 PF13144 Chaperone for flagella basal body P-ring formation LNQ46_010220 PF17656 FlgA N-terminal domain LNQ46_010225 PF04316 Anti-sigma-28 factor, FlgM LNQ46_010230 PF05130 FlgN protein LNQ46_010235 PF06366 Flagellar protein FlhE LNQ46_010240 PF00771 FHIPEP family LNQ46_010245 PF01312 FlhB HrpN YscU SpaS Family LNQ46_010250 PF00082 Subtilase family LNQ46_010250 PF01483 Proprotein convertase P-domain LNQ46_010255 PF04344 Chemotaxis phosphatase, CheZ LNQ46_010260 PF00072 Response regulator receiver domain LNQ46_010265 PF00072 Response regulator receiver domain LNQ46_010265 PF01339 CheB methylesterase LNQ46_010270 PF03705 CheR methyltransferase, all-alpha domain LNQ46_010270 PF01739 CheR methyltransferase, SAM binding domain LNQ46_010275 PF02203 Tar ligand binding domain homologue LNQ46_010275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ46_010275 PF00672 HAMP domain LNQ46_010280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ46_010280 PF02203 Tar ligand binding domain homologue LNQ46_010280 PF00672 HAMP domain LNQ46_010285 PF01584 CheW-like domain LNQ46_010290 PF01584 CheW-like domain LNQ46_010290 PF09078 CheY binding LNQ46_010290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_010290 PF01627 Hpt domain LNQ46_010290 PF02895 Signal transducing histidine kinase, homodimeric domain LNQ46_010295 PF13677 Membrane MotB of proton-channel complex MotA/MotB LNQ46_010295 PF00691 OmpA family LNQ46_010300 PF01618 MotA/TolQ/ExbB proton channel family LNQ46_010305 PF05280 Flagellar transcriptional activator (FlhC) LNQ46_010310 PF05247 Flagellar transcriptional activator (FlhD) LNQ46_010315 PF00582 Universal stress protein family LNQ46_010320 PF02308 MgtC family LNQ46_010325 PF02203 Tar ligand binding domain homologue LNQ46_010325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ46_010325 PF00672 HAMP domain LNQ46_010330 PF10781 Dextransucrase DSRB LNQ46_010335 PF00313 'Cold-shock' DNA-binding domain LNQ46_010340 PF00356 Bacterial regulatory proteins, lacI family LNQ46_010345 PF16353 Domain of unknown function(DUF4981) LNQ46_010345 PF02929 Beta galactosidase small chain LNQ46_010345 PF02837 Glycosyl hydrolases family 2, sugar binding domain LNQ46_010345 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LNQ46_010345 PF00703 Glycosyl hydrolases family 2 LNQ46_010350 PF00698 Acyl transferase domain LNQ46_010350 PF08240 Alcohol dehydrogenase GroES-like domain LNQ46_010350 PF00107 Zinc-binding dehydrogenase LNQ46_010350 PF16197 Ketoacyl-synthetase C-terminal extension LNQ46_010350 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ46_010350 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ46_010350 PF08659 KR domain LNQ46_010350 PF00550 Phosphopantetheine attachment site LNQ46_010350 PF14765 Polyketide synthase dehydratase LNQ46_010355 PF10777 Inner membrane protein YlaC LNQ46_010370 PF14001 YdfZ protein LNQ46_010380 PF06167 Glucose-regulated metallo-peptidase M90 LNQ46_010400 PF01648 4'-phosphopantetheinyl transferase superfamily LNQ46_010400 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LNQ46_010405 PF00939 Sodium:sulfate symporter transmembrane region LNQ46_010410 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LNQ46_010415 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase LNQ46_010420 PF04223 Citrate lyase, alpha subunit (CitF) LNQ46_010425 PF03328 HpcH/HpaI aldolase/citrate lyase family LNQ46_010430 PF06857 Malonate decarboxylase delta subunit (MdcD) LNQ46_010435 PF08218 Citrate lyase ligase C-terminal domain LNQ46_010440 PF17203 Single cache domain 3 LNQ46_010440 PF00989 PAS fold LNQ46_010440 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LNQ46_010440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_010445 PF12431 Transcriptional regulator LNQ46_010445 PF00072 Response regulator receiver domain LNQ46_010450 PF00196 Bacterial regulatory proteins, luxR family LNQ46_010450 PF00072 Response regulator receiver domain LNQ46_010455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_010455 PF05231 MASE1 LNQ46_010455 PF07730 Histidine kinase LNQ46_010460 PF07690 Major Facilitator Superfamily LNQ46_010470 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_010475 PF00005 ABC transporter LNQ46_010475 PF08402 TOBE domain LNQ46_010490 PF04363 Protein of unknown function (DUF496) LNQ46_010495 PF04632 Fusaric acid resistance protein family LNQ46_010505 PF08411 Exonuclease C-terminal LNQ46_010505 PF00929 Exonuclease LNQ46_010510 PF13520 Amino acid permease LNQ46_010515 PF00593 TonB dependent receptor LNQ46_010515 PF07715 TonB-dependent Receptor Plug Domain LNQ46_010520 PF00005 ABC transporter LNQ46_010525 PF01032 FecCD transport family LNQ46_010535 PF00324 Amino acid permease LNQ46_010540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_010540 PF03466 LysR substrate binding domain LNQ46_010550 PF03601 Conserved hypothetical protein 698 LNQ46_010555 PF01261 Xylose isomerase-like TIM barrel LNQ46_010560 PF02378 Phosphotransferase system, EIIC LNQ46_010560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ46_010565 PF00294 pfkB family carbohydrate kinase LNQ46_010570 PF00381 PTS HPr component phosphorylation site LNQ46_010570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ46_010575 PF00293 NUDIX domain LNQ46_010580 PF03264 NapC/NirT cytochrome c family, N-terminal region LNQ46_010585 PF18364 Molybdopterin oxidoreductase N-terminal domain LNQ46_010585 PF00384 Molybdopterin oxidoreductase LNQ46_010585 PF01568 Molydopterin dinucleotide binding domain LNQ46_010590 PF03692 Putative zinc- or iron-chelating domain LNQ46_010595 PF03222 Tryptophan/tyrosine permease family LNQ46_010600 PF08207 Elongation factor P (EF-P) KOW-like domain LNQ46_010600 PF01132 Elongation factor P (EF-P) OB domain LNQ46_010600 PF09285 Elongation factor P, C-terminal LNQ46_010605 PF03786 D-mannonate dehydratase (UxuA) LNQ46_010610 PF08125 Mannitol dehydrogenase C-terminal domain LNQ46_010610 PF01232 Mannitol dehydrogenase Rossmann domain LNQ46_010620 PF07683 Cobalamin synthesis protein cobW C-terminal domain LNQ46_010620 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNQ46_010625 PF01569 PAP2 superfamily LNQ46_010630 PF00877 NlpC/P60 family LNQ46_010635 PF12792 CSS motif domain associated with EAL LNQ46_010635 PF00563 EAL domain LNQ46_010640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ46_010645 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_010650 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_010650 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ46_010655 PF00005 ABC transporter LNQ46_010655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ46_010660 PF13989 YejG-like protein LNQ46_010665 PF07690 Major Facilitator Superfamily LNQ46_010670 PF01479 S4 domain LNQ46_010670 PF00849 RNA pseudouridylate synthase LNQ46_010675 PF00271 Helicase conserved C-terminal domain LNQ46_010675 PF04851 Type III restriction enzyme, res subunit LNQ46_010680 PF01386 Ribosomal L25p family LNQ46_010685 PF04245 37-kD nucleoid-associated bacterial protein LNQ46_010690 PF07208 Protein of unknown function (DUF1414) LNQ46_010695 PF11893 Domain of unknown function (DUF3413) LNQ46_010695 PF00884 Sulfatase LNQ46_010710 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ46_010720 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) LNQ46_010725 PF04865 Baseplate J-like protein LNQ46_010770 PF17482 Phage tail sheath C-terminal domain LNQ46_010770 PF04984 Phage tail sheath protein subtilisin-like domain LNQ46_010820 PF03354 Phage Terminase LNQ46_010840 PF03245 Bacteriophage Rz lysis protein LNQ46_010845 PF13539 D-alanyl-D-alanine carboxypeptidase LNQ46_010875 PF03793 PASTA domain LNQ46_010875 PF00069 Protein kinase domain LNQ46_010880 PF01555 DNA methylase LNQ46_010890 PF06147 Protein of unknown function (DUF968) LNQ46_010905 PF05869 DNA N-6-adenine-methyltransferase (Dam) LNQ46_010910 PF03354 Phage Terminase LNQ46_010945 PF10065 Uncharacterized conserved protein (DUF2303) LNQ46_010990 PF06183 DinI-like family LNQ46_010995 PF12706 Beta-lactamase superfamily domain LNQ46_011000 PF00144 Beta-lactamase LNQ46_011005 PF13302 Acetyltransferase (GNAT) domain LNQ46_011020 PF00267 Gram-negative porin LNQ46_011025 PF07690 Major Facilitator Superfamily LNQ46_011030 PF16359 RcsD-ABL domain LNQ46_011030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_011030 PF01627 Hpt domain LNQ46_011035 PF00196 Bacterial regulatory proteins, luxR family LNQ46_011035 PF00072 Response regulator receiver domain LNQ46_011040 PF09456 RcsC Alpha-Beta-Loop (ABL) LNQ46_011040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_011040 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_011040 PF00072 Response regulator receiver domain LNQ46_011045 PF03989 DNA gyrase C-terminal domain, beta-propeller LNQ46_011045 PF00521 DNA gyrase/topoisomerase IV, subunit A LNQ46_011055 PF02867 Ribonucleotide reductase, barrel domain LNQ46_011055 PF00317 Ribonucleotide reductase, all-alpha domain LNQ46_011055 PF03477 ATP cone domain LNQ46_011060 PF00268 Ribonucleotide reductase, small chain LNQ46_011065 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ46_011075 PF03974 Ecotin LNQ46_011080 PF00994 Probable molybdopterin binding domain LNQ46_011085 PF04138 GtrA-like protein LNQ46_011090 PF00535 Glycosyl transferase family 2 LNQ46_011100 PF03222 Tryptophan/tyrosine permease family LNQ46_011105 PF07437 YfaZ precursor LNQ46_011110 PF00199 Catalase LNQ46_011110 PF06628 Catalase-related immune-responsive LNQ46_011115 PF00501 AMP-binding enzyme LNQ46_011115 PF13193 AMP-binding enzyme C-terminal domain LNQ46_011120 PF13378 Enolase C-terminal domain-like LNQ46_011125 PF00378 Enoyl-CoA hydratase/isomerase LNQ46_011130 PF12697 Alpha/beta hydrolase family LNQ46_011135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ46_011135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ46_011135 PF16582 Middle domain of thiamine pyrophosphate LNQ46_011140 PF00425 chorismate binding enzyme LNQ46_011145 PF05957 Bacterial protein of unknown function (DUF883) LNQ46_011150 PF06496 Protein of unknown function (DUF1097) LNQ46_011155 PF00361 Proton-conducting membrane transporter LNQ46_011160 PF00361 Proton-conducting membrane transporter LNQ46_011165 PF00361 Proton-conducting membrane transporter LNQ46_011165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LNQ46_011170 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LNQ46_011175 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LNQ46_011180 PF12838 4Fe-4S dicluster domain LNQ46_011185 PF00146 NADH dehydrogenase LNQ46_011190 PF01568 Molydopterin dinucleotide binding domain LNQ46_011190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ46_011190 PF00384 Molybdopterin oxidoreductase LNQ46_011190 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LNQ46_011195 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNQ46_011195 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNQ46_011195 PF10531 SLBB domain LNQ46_011205 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LNQ46_011205 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LNQ46_011210 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LNQ46_011215 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LNQ46_011220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_011220 PF03466 LysR substrate binding domain LNQ46_011225 PF00155 Aminotransferase class I and II LNQ46_011235 PF02080 TrkA-C domain LNQ46_011235 PF03600 Citrate transporter LNQ46_011245 PF03887 YfbU domain LNQ46_011250 PF04217 Protein of unknown function, DUF412 LNQ46_011255 PF00871 Acetokinase family LNQ46_011260 PF07085 DRTGG domain LNQ46_011260 PF01515 Phosphate acetyl/butaryl transferase LNQ46_011265 PF00356 Bacterial regulatory proteins, lacI family LNQ46_011265 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ46_011270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ46_011280 PF03611 PTS system sugar-specific permease component LNQ46_011285 PF00293 NUDIX domain LNQ46_011290 PF12850 Calcineurin-like phosphoesterase superfamily domain LNQ46_011300 PF00043 Glutathione S-transferase, C-terminal domain LNQ46_011300 PF02798 Glutathione S-transferase, N-terminal domain LNQ46_011305 PF08338 Domain of unknown function (DUF1731) LNQ46_011305 PF01370 NAD dependent epimerase/dehydratase family LNQ46_011310 PF00005 ABC transporter LNQ46_011315 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_011320 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_011325 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_011335 PF02441 Flavoprotein LNQ46_011340 PF00156 Phosphoribosyl transferase domain LNQ46_011345 PF02674 Colicin V production protein LNQ46_011350 PF05036 Sporulation related domain LNQ46_011355 PF02875 Mur ligase family, glutamate ligase domain LNQ46_011355 PF08245 Mur ligase middle domain LNQ46_011360 PF01039 Carboxyl transferase domain LNQ46_011360 PF17848 Acetyl-coA carboxylase zinc finger domain LNQ46_011365 PF09335 SNARE associated Golgi protein LNQ46_011370 PF01416 tRNA pseudouridine synthase LNQ46_011375 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ46_011375 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ46_011380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ46_011380 PF11890 Domain of unknown function (DUF3410) LNQ46_011380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ46_011400 PF00155 Aminotransferase class I and II LNQ46_011405 PF00578 AhpC/TSA family LNQ46_011435 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ46_011435 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ46_011440 PF01266 FAD dependent oxidoreductase LNQ46_011440 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LNQ46_011445 PF08891 YfcL protein LNQ46_011450 PF04315 Elongation factor P hydroxylase LNQ46_011455 PF01925 Sulfite exporter TauE/SafE LNQ46_011460 PF03411 Penicillin-insensitive murein endopeptidase LNQ46_011465 PF01264 Chorismate synthase LNQ46_011470 PF05175 Methyltransferase small domain LNQ46_011475 PF01713 Smr domain LNQ46_011480 PF00300 Histidine phosphatase superfamily (branch 1) LNQ46_011485 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNQ46_011485 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNQ46_011485 PF00378 Enoyl-CoA hydratase/isomerase LNQ46_011490 PF02803 Thiolase, C-terminal domain LNQ46_011490 PF00108 Thiolase, N-terminal domain LNQ46_011495 PF04175 Protein of unknown function (DUF406) LNQ46_011500 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LNQ46_011505 PF04333 MlaA lipoprotein LNQ46_011510 PF03918 Cytochrome C biogenesis protein LNQ46_011515 PF03918 Cytochrome C biogenesis protein LNQ46_011520 PF08534 Redoxin LNQ46_011525 PF01578 Cytochrome C assembly protein LNQ46_011525 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LNQ46_011530 PF03100 CcmE LNQ46_011535 PF04995 Heme exporter protein D (CcmD) LNQ46_011540 PF01578 Cytochrome C assembly protein LNQ46_011545 PF03379 CcmB protein LNQ46_011550 PF00005 ABC transporter LNQ46_011565 PF03831 PhnA domain LNQ46_011565 PF08274 PhnA Zinc-Ribbon LNQ46_011570 PF13406 Transglycosylase SLT domain LNQ46_011585 PF01292 Prokaryotic cytochrome b561 LNQ46_011605 PF07350 Protein of unknown function (DUF1479) LNQ46_011610 PF07694 5TMR of 5TMR-LYT LNQ46_011610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_011610 PF06580 Histidine kinase LNQ46_011615 PF04397 LytTr DNA-binding domain LNQ46_011615 PF00072 Response regulator receiver domain LNQ46_011620 PF07690 Major Facilitator Superfamily LNQ46_011625 PF02685 Glucokinase LNQ46_011635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_011635 PF03466 LysR substrate binding domain LNQ46_011645 PF01566 Natural resistance-associated macrophage protein LNQ46_011650 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ46_011650 PF07670 Nucleoside recognition LNQ46_011650 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ46_011680 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ46_011705 PF12843 Putative quorum-sensing-regulated virulence factor LNQ46_011710 PF00533 BRCA1 C Terminus (BRCT) domain LNQ46_011710 PF01653 NAD-dependent DNA ligase adenylation domain LNQ46_011710 PF03120 NAD-dependent DNA ligase OB-fold domain LNQ46_011710 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LNQ46_011710 PF12826 Helix-hairpin-helix motif LNQ46_011715 PF04354 ZipA, C-terminal FtsZ-binding domain LNQ46_011725 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_011730 PF00381 PTS HPr component phosphorylation site LNQ46_011735 PF05524 PEP-utilising enzyme, N-terminal LNQ46_011735 PF00391 PEP-utilising enzyme, mobile domain LNQ46_011735 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ46_011740 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LNQ46_011745 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_011750 PF00005 ABC transporter LNQ46_011755 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_011760 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_011770 PF07690 Major Facilitator Superfamily LNQ46_011775 PF01380 SIS domain LNQ46_011775 PF01418 Helix-turn-helix domain, rpiR family LNQ46_011780 PF04074 YhcH/YjgK/YiaL LNQ46_011785 PF00480 ROK family LNQ46_011790 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LNQ46_011795 PF00701 Dihydrodipicolinate synthetase family LNQ46_011800 PF04261 Dyp-type peroxidase family LNQ46_011805 PF06572 Protein of unknown function (DUF1131) LNQ46_011810 PF04076 Bacterial OB fold (BOF) protein LNQ46_011875 PF00583 Acetyltransferase (GNAT) family LNQ46_011880 PF01218 Coproporphyrinogen III oxidase LNQ46_011885 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LNQ46_011890 PF00390 Malic enzyme, N-terminal domain LNQ46_011890 PF03949 Malic enzyme, NAD binding domain LNQ46_011890 PF01515 Phosphate acetyl/butaryl transferase LNQ46_011895 PF00293 NUDIX domain LNQ46_011900 PF03264 NapC/NirT cytochrome c family, N-terminal region LNQ46_011905 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LNQ46_011910 PF01568 Molydopterin dinucleotide binding domain LNQ46_011910 PF10518 TAT (twin-arginine translocation) pathway signal sequence LNQ46_011910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ46_011910 PF00384 Molybdopterin oxidoreductase LNQ46_011915 PF03927 NapD protein LNQ46_011920 PF00037 4Fe-4S binding domain LNQ46_011920 PF12800 4Fe-4S binding domain LNQ46_011920 PF13187 4Fe-4S dicluster domain LNQ46_011925 PF00196 Bacterial regulatory proteins, luxR family LNQ46_011925 PF00072 Response regulator receiver domain LNQ46_011935 PF00873 AcrB/AcrD/AcrF family LNQ46_011945 PF01817 Chorismate mutase type II LNQ46_011950 PF03960 ArsC family LNQ46_011955 PF01546 Peptidase family M20/M25/M40 LNQ46_011955 PF07687 Peptidase dimerisation domain LNQ46_011960 PF02557 D-alanyl-D-alanine carboxypeptidase LNQ46_011965 PF13980 Uncharacterised protein family (UPF0370) LNQ46_011970 PF02230 Phospholipase/Carboxylesterase LNQ46_011975 PF17176 tRNA-binding domain LNQ46_011975 PF05127 Helicase LNQ46_011975 PF13718 GNAT acetyltransferase 2 LNQ46_011975 PF08351 Domain of unknown function (DUF1726) LNQ46_011980 PF04284 Protein of unknown function (DUF441) LNQ46_011985 PF01259 SAICAR synthetase LNQ46_011990 PF06804 NlpB/DapX lipoprotein LNQ46_011995 PF00701 Dihydrodipicolinate synthetase family LNQ46_012000 PF01842 ACT domain LNQ46_012005 PF00578 AhpC/TSA family LNQ46_012010 PF01594 AI-2E family transporter LNQ46_012015 PF01435 Peptidase family M48 LNQ46_012015 PF07720 Tetratricopeptide repeat LNQ46_012020 PF03960 ArsC family LNQ46_012025 PF00308 Bacterial dnaA protein LNQ46_012030 PF00860 Permease family LNQ46_012040 PF00586 AIR synthase related protein, N-terminal domain LNQ46_012040 PF02769 AIR synthase related protein, C-terminal domain LNQ46_012045 PF00551 Formyl transferase LNQ46_012050 PF13302 Acetyltransferase (GNAT) domain LNQ46_012055 PF00005 ABC transporter LNQ46_012060 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_012065 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_012070 PF17941 Polyphosphate kinase C-terminal domain 1 LNQ46_012070 PF13089 Polyphosphate kinase N-terminal domain LNQ46_012070 PF02503 Polyphosphate kinase middle domain LNQ46_012070 PF13090 Polyphosphate kinase C-terminal domain 2 LNQ46_012075 PF02541 Ppx/GppA phosphatase family LNQ46_012085 PF00571 CBS domain LNQ46_012085 PF03448 MgtE intracellular N domain LNQ46_012085 PF01769 Divalent cation transporter LNQ46_012090 PF00012 Hsp70 protein LNQ46_012100 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ46_012100 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ46_012105 PF13954 PapC N-terminal domain LNQ46_012105 PF00577 Outer membrane usher protein LNQ46_012105 PF13953 PapC C-terminal domain LNQ46_012120 PF13533 Biotin-lipoyl like LNQ46_012125 PF00873 AcrB/AcrD/AcrF family LNQ46_012130 PF00873 AcrB/AcrD/AcrF family LNQ46_012135 PF07690 Major Facilitator Superfamily LNQ46_012140 PF00672 HAMP domain LNQ46_012140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_012140 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_012145 PF00072 Response regulator receiver domain LNQ46_012145 PF00486 Transcriptional regulatory protein, C terminal LNQ46_012150 PF07411 Domain of unknown function (DUF1508) LNQ46_012155 PF01136 Peptidase family U32 LNQ46_012155 PF16325 Peptidase family U32 C-terminal domain LNQ46_012160 PF00781 Diacylglycerol kinase catalytic domain LNQ46_012175 PF08543 Phosphomethylpyrimidine kinase LNQ46_012185 PF00117 Glutamine amidotransferase class-I LNQ46_012185 PF02540 NAD synthase LNQ46_012185 PF00958 GMP synthase C terminal domain LNQ46_012190 PF00571 CBS domain LNQ46_012190 PF00478 IMP dehydrogenase / GMP reductase domain LNQ46_012195 PF02601 Exonuclease VII, large subunit LNQ46_012195 PF13742 OB-fold nucleic acid binding domain LNQ46_012200 PF07191 zinc-ribbons LNQ46_012205 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LNQ46_012205 PF01926 50S ribosome-binding GTPase LNQ46_012210 PF13360 PQQ-like domain LNQ46_012215 PF09976 Tetratricopeptide repeat-like domain LNQ46_012220 PF13393 Histidyl-tRNA synthetase LNQ46_012220 PF03129 Anticodon binding domain LNQ46_012225 PF04551 GcpE protein LNQ46_012230 PF13464 Domain of unknown function (DUF4115) LNQ46_012240 PF04055 Radical SAM superfamily LNQ46_012245 PF00334 Nucleoside diphosphate kinase LNQ46_012255 PF00905 Penicillin binding protein transpeptidase domain LNQ46_012255 PF06832 Penicillin-Binding Protein C-terminus Family LNQ46_012255 PF00912 Transglycosylase LNQ46_012260 PF00207 Alpha-2-macroglobulin family LNQ46_012260 PF07703 Alpha-2-macroglobulin bait region domain LNQ46_012260 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LNQ46_012260 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LNQ46_012260 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LNQ46_012260 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LNQ46_012260 PF17962 Bacterial macroglobulin domain 6 LNQ46_012260 PF01835 MG2 domain LNQ46_012260 PF07678 A-macroglobulin TED domain LNQ46_012265 PF07179 SseB protein N-terminal domain LNQ46_012265 PF14581 SseB protein C-terminal domain LNQ46_012270 PF12404 Peptidase LNQ46_012270 PF00883 Cytosol aminopeptidase family, catalytic domain LNQ46_012275 PF04384 Iron-sulphur cluster assembly LNQ46_012280 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ46_012285 PF00012 Hsp70 protein LNQ46_012290 PF00226 DnaJ domain LNQ46_012290 PF07743 HSCB C-terminal oligomerisation domain LNQ46_012295 PF01521 Iron-sulphur cluster biosynthesis LNQ46_012300 PF01592 NifU-like N terminal domain LNQ46_012305 PF00266 Aminotransferase class-V LNQ46_012310 PF02082 Transcriptional regulator LNQ46_012315 PF00588 SpoU rRNA Methylase family LNQ46_012320 PF00459 Inositol monophosphatase family LNQ46_012325 PF03824 High-affinity nickel-transport protein LNQ46_012330 PF06226 Protein of unknown function (DUF1007) LNQ46_012335 PF00874 PRD domain LNQ46_012340 PF12832 MFS_1 like family LNQ46_012345 PF00464 Serine hydroxymethyltransferase LNQ46_012350 PF00970 Oxidoreductase FAD-binding domain LNQ46_012350 PF00175 Oxidoreductase NAD-binding domain LNQ46_012350 PF00042 Globin LNQ46_012355 PF14502 Helix-turn-helix domain LNQ46_012355 PF14503 YhfZ C-terminal domain LNQ46_012365 PF01168 Alanine racemase, N-terminal domain LNQ46_012370 PF02126 Phosphotriesterase family LNQ46_012375 PF10941 Protein of unknown function DUF2620 LNQ46_012380 PF10797 Protein of unknown function LNQ46_012385 PF00543 Nitrogen regulatory protein P-II LNQ46_012390 PF00795 Carbon-nitrogen hydrolase LNQ46_012390 PF02540 NAD synthase LNQ46_012395 PF00158 Sigma-54 interaction domain LNQ46_012395 PF00072 Response regulator receiver domain LNQ46_012400 PF13942 YfhG lipoprotein LNQ46_012405 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_012405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_012415 PF02769 AIR synthase related protein, C-terminal domain LNQ46_012415 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LNQ46_012415 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LNQ46_012420 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_012420 PF01464 Transglycosylase SLT domain LNQ46_012425 PF14437 MafB19-like deaminase LNQ46_012435 PF02378 Phosphotransferase system, EIIC LNQ46_012435 PF00367 phosphotransferase system, EIIB LNQ46_012440 PF01380 SIS domain LNQ46_012445 PF01418 Helix-turn-helix domain, rpiR family LNQ46_012445 PF01380 SIS domain LNQ46_012450 PF12838 4Fe-4S dicluster domain LNQ46_012455 PF01648 4'-phosphopantetheinyl transferase superfamily LNQ46_012460 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LNQ46_012465 PF02565 Recombination protein O C terminal LNQ46_012465 PF11967 Recombination protein O N terminal LNQ46_012470 PF07650 KH domain LNQ46_012470 PF01926 50S ribosome-binding GTPase LNQ46_012475 PF00035 Double-stranded RNA binding motif LNQ46_012475 PF14622 Ribonuclease-III-like LNQ46_012480 PF10502 Signal peptidase, peptidase S26 LNQ46_012485 PF03144 Elongation factor Tu domain 2 LNQ46_012485 PF06421 GTP-binding protein LepA C-terminus LNQ46_012485 PF00679 Elongation factor G C-terminus LNQ46_012485 PF00009 Elongation factor Tu GTP binding domain LNQ46_012495 PF03888 MucB/RseB N-terminal domain LNQ46_012495 PF17188 MucB/RseB C-terminal domain LNQ46_012500 PF03873 Anti sigma-E protein RseA, C-terminal domain LNQ46_012500 PF03872 Anti sigma-E protein RseA, N-terminal domain LNQ46_012505 PF04542 Sigma-70 region 2 LNQ46_012505 PF08281 Sigma-70, region 4 LNQ46_012510 PF02910 Fumarate reductase flavoprotein C-term LNQ46_012510 PF00890 FAD binding domain LNQ46_012515 PF05175 Methyltransferase small domain LNQ46_012520 PF00270 DEAD/DEAH box helicase LNQ46_012520 PF00271 Helicase conserved C-terminal domain LNQ46_012525 PF12796 Ankyrin repeats (3 copies) LNQ46_012535 PF01228 Glycine radical LNQ46_012540 PF03167 Uracil DNA glycosylase superfamily LNQ46_012545 PF01025 GrpE LNQ46_012550 PF01513 ATP-NAD kinase LNQ46_012555 PF02463 RecF/RecN/SMC N terminal domain LNQ46_012560 PF04355 SmpA / OmlA family LNQ46_012565 PF03658 RnfH family Ubiquitin LNQ46_012570 PF03364 Polyketide cyclase / dehydrase and lipid transport LNQ46_012575 PF01668 SmpB protein LNQ46_012590 PF00571 CBS domain LNQ46_012590 PF01380 SIS domain LNQ46_012595 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNQ46_012595 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNQ46_012605 PF02653 Branched-chain amino acid transport system / permease component LNQ46_012610 PF00005 ABC transporter LNQ46_012620 PF00561 alpha/beta hydrolase fold LNQ46_012625 PF03466 LysR substrate binding domain LNQ46_012625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_012630 PF02652 L-lactate permease LNQ46_012635 PF01070 FMN-dependent dehydrogenase LNQ46_012640 PF06039 Malate:quinone oxidoreductase (Mqo) LNQ46_012645 PF00313 'Cold-shock' DNA-binding domain LNQ46_012655 PF06711 Protein of unknown function (DUF1198) LNQ46_012660 PF09400 Protein of unknown function (DUF2002) LNQ46_012675 PF07972 NrdI Flavodoxin like LNQ46_012680 PF02867 Ribonucleotide reductase, barrel domain LNQ46_012680 PF00317 Ribonucleotide reductase, all-alpha domain LNQ46_012680 PF08343 Ribonucleotide reductase N-terminal LNQ46_012685 PF00268 Ribonucleotide reductase, small chain LNQ46_012690 PF00005 ABC transporter LNQ46_012690 PF00571 CBS domain LNQ46_012695 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_012700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LNQ46_012705 PF07690 Major Facilitator Superfamily LNQ46_012710 PF01047 MarR family LNQ46_012720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ46_012720 PF00529 HlyD membrane-fusion protein of T1SS LNQ46_012725 PF07690 Major Facilitator Superfamily LNQ46_012730 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNQ46_012730 PF00588 SpoU rRNA Methylase family LNQ46_012735 PF00085 Thioredoxin LNQ46_012740 PF03942 DTW domain LNQ46_012745 PF13607 Succinyl-CoA ligase like flavodoxin domain LNQ46_012745 PF13380 CoA binding domain LNQ46_012745 PF00583 Acetyltransferase (GNAT) family LNQ46_012750 PF13091 PLD-like domain LNQ46_012755 PF10043 Predicted periplasmic lipoprotein (DUF2279) LNQ46_012785 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ46_012785 PF17871 AAA lid domain LNQ46_012785 PF07724 AAA domain (Cdc48 subfamily) LNQ46_012785 PF00004 ATPase family associated with various cellular activities (AAA) LNQ46_012785 PF02861 Clp amino terminal domain, pathogenicity island component LNQ46_012790 PF02578 Multi-copper polyphenol oxidoreductase laccase LNQ46_012795 PF01479 S4 domain LNQ46_012795 PF00849 RNA pseudouridylate synthase LNQ46_012800 PF13525 Outer membrane lipoprotein LNQ46_012805 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LNQ46_012815 PF01817 Chorismate mutase type II LNQ46_012815 PF00800 Prephenate dehydratase LNQ46_012820 PF01817 Chorismate mutase type II LNQ46_012820 PF02153 Prephenate dehydrogenase LNQ46_012825 PF00793 DAHP synthetase I family LNQ46_012830 PF00072 Response regulator receiver domain LNQ46_012830 PF04397 LytTr DNA-binding domain LNQ46_012835 PF03605 Anaerobic c4-dicarboxylate membrane transporter LNQ46_012840 PF04338 Protein of unknown function, DUF481 LNQ46_012845 PF01245 Ribosomal protein L19 LNQ46_012850 PF01746 tRNA (Guanine-1)-methyltransferase LNQ46_012855 PF05239 PRC-barrel domain LNQ46_012855 PF01782 RimM N-terminal domain LNQ46_012860 PF00886 Ribosomal protein S16 LNQ46_012865 PF00448 SRP54-type protein, GTPase domain LNQ46_012865 PF02881 SRP54-type protein, helical bundle domain LNQ46_012865 PF02978 Signal peptide binding domain LNQ46_012870 PF01578 Cytochrome C assembly protein LNQ46_012875 PF03471 Transporter associated domain LNQ46_012875 PF01595 Cyclin M transmembrane N-terminal domain LNQ46_012875 PF00571 CBS domain LNQ46_012880 PF02664 S-Ribosylhomocysteinase (LuxS) LNQ46_012885 PF04262 Glutamate-cysteine ligase LNQ46_012890 PF09335 SNARE associated Golgi protein LNQ46_012895 PF13419 Haloacid dehalogenase-like hydrolase LNQ46_012925 PF02599 Global regulator protein family LNQ46_012930 PF01411 tRNA synthetases class II (A) LNQ46_012930 PF02272 DHHA1 domain LNQ46_012930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ46_012935 PF02631 RecX family LNQ46_012940 PF00154 recA bacterial DNA recombination protein LNQ46_012945 PF02464 Competence-damaged protein LNQ46_012950 PF07690 Major Facilitator Superfamily LNQ46_012955 PF05681 Fumarate hydratase (Fumerase) LNQ46_012955 PF05683 Fumarase C-terminus LNQ46_012980 PF11356 Type II secretion system protein C LNQ46_012985 PF00263 Bacterial type II and III secretion system protein LNQ46_012985 PF03958 Bacterial type II/III secretion system short domain LNQ46_012990 PF00437 Type II/IV secretion system protein LNQ46_012995 PF00482 Type II secretion system (T2SS), protein F LNQ46_013000 PF07963 Prokaryotic N-terminal methylation motif LNQ46_013000 PF08334 Type II secretion system (T2SS), protein G LNQ46_013010 PF07963 Prokaryotic N-terminal methylation motif LNQ46_013010 PF02501 Type II secretion system (T2SS), protein I LNQ46_013015 PF07963 Prokaryotic N-terminal methylation motif LNQ46_013015 PF11612 Type II secretion system (T2SS), protein J LNQ46_013020 PF03934 Type II secretion system (T2SS), protein K LNQ46_013025 PF05134 Type II secretion system (T2SS), protein L LNQ46_013025 PF12693 GspL periplasmic domain LNQ46_013035 PF01478 Type IV leader peptidase family LNQ46_013035 PF06750 Bacterial Peptidase A24 N-terminal domain LNQ46_013040 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LNQ46_013045 PF18416 N-acetylglucosamine binding protein domain 2 LNQ46_013045 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ46_013065 PF00550 Phosphopantetheine attachment site LNQ46_013090 PF07720 Tetratricopeptide repeat LNQ46_013095 PF01312 FlhB HrpN YscU SpaS Family LNQ46_013100 PF01311 Bacterial export proteins, family 1 LNQ46_013105 PF01313 Bacterial export proteins, family 3 LNQ46_013110 PF00813 FliP family LNQ46_013115 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ46_013130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ46_013130 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ46_013130 PF18269 T3SS EscN ATPase C-terminal domain LNQ46_013140 PF00771 FHIPEP family LNQ46_013145 PF07201 HrpJ-like domain LNQ46_013150 PF00263 Bacterial type II and III secretion system protein LNQ46_013150 PF03958 Bacterial type II/III secretion system short domain LNQ46_013155 PF12833 Helix-turn-helix domain LNQ46_013175 PF01514 Secretory protein of YscJ/FliF family LNQ46_013195 PF01464 Transglycosylase SLT domain LNQ46_013210 PF00196 Bacterial regulatory proteins, luxR family LNQ46_013210 PF00072 Response regulator receiver domain LNQ46_013215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_013215 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_013215 PF00072 Response regulator receiver domain LNQ46_013215 PF09308 LuxQ, periplasmic LNQ46_013255 PF00501 AMP-binding enzyme LNQ46_013255 PF13193 AMP-binding enzyme C-terminal domain LNQ46_013255 PF00668 Condensation domain LNQ46_013255 PF00550 Phosphopantetheine attachment site LNQ46_013290 PF01624 MutS domain I LNQ46_013290 PF05188 MutS domain II LNQ46_013290 PF05192 MutS domain III LNQ46_013290 PF05190 MutS family domain IV LNQ46_013290 PF00488 MutS domain V LNQ46_013295 PF00140 Sigma-70 factor, region 1.2 LNQ46_013295 PF04539 Sigma-70 region 3 LNQ46_013295 PF04545 Sigma-70, region 4 LNQ46_013295 PF04542 Sigma-70 region 2 LNQ46_013300 PF01476 LysM domain LNQ46_013300 PF01551 Peptidase family M23 LNQ46_013310 PF01975 Survival protein SurE LNQ46_013315 PF01142 tRNA pseudouridine synthase D (TruD) LNQ46_013320 PF02542 YgbB family LNQ46_013325 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LNQ46_013330 PF04977 Septum formation initiator LNQ46_013335 PF12084 Protein of unknown function (DUF3561) LNQ46_013345 PF00009 Elongation factor Tu GTP binding domain LNQ46_013350 PF01507 Phosphoadenosine phosphosulfate reductase family LNQ46_013355 PF10414 Sirohaem synthase dimerisation region LNQ46_013355 PF14824 Sirohaem biosynthesis protein central LNQ46_013355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ46_013360 PF04389 Peptidase family M28 LNQ46_013375 PF01507 Phosphoadenosine phosphosulfate reductase family LNQ46_013380 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNQ46_013380 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNQ46_013385 PF00667 FAD binding domain LNQ46_013385 PF00258 Flavodoxin LNQ46_013385 PF00175 Oxidoreductase NAD-binding domain LNQ46_013390 PF01242 6-pyruvoyl tetrahydropterin synthase LNQ46_013395 PF04055 Radical SAM superfamily LNQ46_013400 PF00113 Enolase, C-terminal TIM barrel domain LNQ46_013400 PF03952 Enolase, N-terminal domain LNQ46_013405 PF00117 Glutamine amidotransferase class-I LNQ46_013405 PF06418 CTP synthase N-terminus LNQ46_013410 PF03819 MazG nucleotide pyrophosphohydrolase domain LNQ46_013415 PF04607 Region found in RelA / SpoT proteins LNQ46_013415 PF13291 ACT domain LNQ46_013415 PF02824 TGS domain LNQ46_013420 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ46_013420 PF01938 TRAM domain LNQ46_013425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_013425 PF00672 HAMP domain LNQ46_013425 PF00072 Response regulator receiver domain LNQ46_013425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNQ46_013425 PF01627 Hpt domain LNQ46_013425 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_013430 PF00595 PDZ domain LNQ46_013435 PF13286 Phosphohydrolase-associated domain LNQ46_013435 PF01966 HD domain LNQ46_013440 PF01048 Phosphorylase superfamily LNQ46_013445 PF01497 Periplasmic binding protein LNQ46_013450 PF03458 UPF0126 domain LNQ46_013455 PF01521 Iron-sulphur cluster biosynthesis LNQ46_013460 PF00654 Voltage gated chloride channel LNQ46_013465 PF00202 Aminotransferase class-III LNQ46_013470 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LNQ46_013470 PF00905 Penicillin binding protein transpeptidase domain LNQ46_013470 PF14814 Bifunctional transglycosylase second domain LNQ46_013470 PF00912 Transglycosylase LNQ46_013475 PF08482 ATP-dependent helicase C-terminal LNQ46_013475 PF00270 DEAD/DEAH box helicase LNQ46_013475 PF04408 Helicase associated domain (HA2) LNQ46_013475 PF00271 Helicase conserved C-terminal domain LNQ46_013480 PF02834 LigT like Phosphoesterase LNQ46_013485 PF17746 SfsA N-terminal OB domain LNQ46_013485 PF03749 Sugar fermentation stimulation protein RE domain LNQ46_013490 PF01258 Prokaryotic dksA/traR C4-type zinc finger LNQ46_013495 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ46_013500 PF12627 Probable RNA and SrmB- binding site of polymerase A LNQ46_013500 PF12626 Polymerase A arginine-rich C-terminus LNQ46_013500 PF01743 Poly A polymerase head domain LNQ46_013505 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LNQ46_013510 PF02548 Ketopantoate hydroxymethyltransferase LNQ46_013515 PF02569 Pantoate-beta-alanine ligase LNQ46_013520 PF02261 Aspartate decarboxylase LNQ46_013525 PF01522 Polysaccharide deacetylase LNQ46_013530 PF01061 ABC-2 type transporter LNQ46_013535 PF00005 ABC transporter LNQ46_013540 PF00484 Carbonic anhydrase LNQ46_013545 PF00156 Phosphoribosyl transferase domain LNQ46_013550 PF10518 TAT (twin-arginine translocation) pathway signal sequence LNQ46_013550 PF00394 Multicopper oxidase LNQ46_013550 PF07731 Multicopper oxidase LNQ46_013550 PF07732 Multicopper oxidase LNQ46_013555 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LNQ46_013560 PF17284 Spermidine synthase tetramerisation domain LNQ46_013565 PF02675 S-adenosylmethionine decarboxylase LNQ46_013570 PF00892 EamA-like transporter family LNQ46_013575 PF06062 Uncharacterised protein family (UPF0231) LNQ46_013580 PF11791 Aconitate B N-terminal domain LNQ46_013580 PF06434 Aconitate hydratase 2 N-terminus LNQ46_013580 PF00330 Aconitase family (aconitate hydratase) LNQ46_013590 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_013590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ46_013595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNQ46_013595 PF00364 Biotin-requiring enzyme LNQ46_013595 PF02817 e3 binding domain LNQ46_013600 PF00456 Transketolase, thiamine diphosphate binding domain LNQ46_013600 PF17831 Pyruvate dehydrogenase E1 component middle domain LNQ46_013605 PF07729 FCD domain LNQ46_013605 PF00392 Bacterial regulatory proteins, gntR family LNQ46_013610 PF00324 Amino acid permease LNQ46_013615 PF17113 Regulatory signalling modulator protein AmpE LNQ46_013620 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ46_013625 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LNQ46_013625 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LNQ46_013630 PF07963 Prokaryotic N-terminal methylation motif LNQ46_013635 PF00437 Type II/IV secretion system protein LNQ46_013635 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LNQ46_013640 PF00482 Type II secretion system (T2SS), protein F LNQ46_013645 PF00478 IMP dehydrogenase / GMP reductase domain LNQ46_013650 PF01121 Dephospho-CoA kinase LNQ46_013655 PF07072 Cell division protein LNQ46_013660 PF03884 DNA gyrase inhibitor YacG LNQ46_013665 PF00293 NUDIX domain LNQ46_013670 PF02810 SEC-C motif LNQ46_013670 PF07517 SecA DEAD-like domain LNQ46_013670 PF01043 SecA preprotein cross-linking domain LNQ46_013670 PF07516 SecA Wing and Scaffold domain LNQ46_013675 PF06558 Secretion monitor precursor protein (SecM) LNQ46_013685 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LNQ46_013690 PF00091 Tubulin/FtsZ family, GTPase domain LNQ46_013690 PF12327 FtsZ family, C-terminal domain LNQ46_013695 PF02491 SHS2 domain inserted in FTSA LNQ46_013700 PF08478 POTRA domain, FtsQ-type LNQ46_013700 PF03799 Cell division protein FtsQ LNQ46_013705 PF01820 D-ala D-ala ligase N-terminus LNQ46_013705 PF07478 D-ala D-ala ligase C-terminus LNQ46_013710 PF08245 Mur ligase middle domain LNQ46_013710 PF02875 Mur ligase family, glutamate ligase domain LNQ46_013710 PF01225 Mur ligase family, catalytic domain LNQ46_013715 PF04101 Glycosyltransferase family 28 C-terminal domain LNQ46_013715 PF03033 Glycosyltransferase family 28 N-terminal domain LNQ46_013720 PF01098 Cell cycle protein LNQ46_013725 PF02875 Mur ligase family, glutamate ligase domain LNQ46_013725 PF08245 Mur ligase middle domain LNQ46_013730 PF00953 Glycosyl transferase family 4 LNQ46_013730 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LNQ46_013735 PF02875 Mur ligase family, glutamate ligase domain LNQ46_013735 PF08245 Mur ligase middle domain LNQ46_013735 PF01225 Mur ligase family, catalytic domain LNQ46_013740 PF01225 Mur ligase family, catalytic domain LNQ46_013740 PF08245 Mur ligase middle domain LNQ46_013740 PF02875 Mur ligase family, glutamate ligase domain LNQ46_013745 PF00905 Penicillin binding protein transpeptidase domain LNQ46_013745 PF03717 Penicillin-binding Protein dimerisation domain LNQ46_013750 PF04999 Cell division protein FtsL LNQ46_013755 PF01795 MraW methylase family LNQ46_013760 PF02381 MraZ protein, putative antitoxin-like LNQ46_013765 PF06610 L-alanine exporter LNQ46_013770 PF00356 Bacterial regulatory proteins, lacI family LNQ46_013770 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ46_013775 PF12323 Helix-turn-helix domain LNQ46_013775 PF01385 Probable transposase LNQ46_013775 PF07282 Putative transposase DNA-binding domain LNQ46_013780 PF01797 Transposase IS200 like LNQ46_013785 PF10369 Small subunit of acetolactate synthase LNQ46_013790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ46_013790 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ46_013790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ46_013795 PF00501 AMP-binding enzyme LNQ46_013800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_013800 PF03466 LysR substrate binding domain LNQ46_013805 PF00682 HMGL-like LNQ46_013805 PF08502 LeuA allosteric (dimerisation) domain LNQ46_013810 PF00180 Isocitrate/isopropylmalate dehydrogenase LNQ46_013815 PF00330 Aconitase family (aconitate hydratase) LNQ46_013820 PF00694 Aconitase C-terminal domain LNQ46_013825 PF07690 Major Facilitator Superfamily LNQ46_013835 PF12793 Sugar transport-related sRNA regulator N-term LNQ46_013835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ46_013845 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_013850 PF00005 ABC transporter LNQ46_013855 PF09335 SNARE associated Golgi protein LNQ46_013860 PF00136 DNA polymerase family B LNQ46_013860 PF03104 DNA polymerase family B, exonuclease domain LNQ46_013865 PF00176 SNF2 family N-terminal domain LNQ46_013865 PF18339 RapA N-terminal Tudor like domain 1 LNQ46_013865 PF18337 RapA N-terminal Tudor like domain LNQ46_013865 PF00271 Helicase conserved C-terminal domain LNQ46_013865 PF12137 RNA polymerase recycling family C-terminal LNQ46_013870 PF00849 RNA pseudouridylate synthase LNQ46_013875 PF00226 DnaJ domain LNQ46_013875 PF05099 Tellurite resistance protein TerB LNQ46_013880 PF03968 OstA-like protein LNQ46_013880 PF04453 LPS transport system D LNQ46_013885 PF00639 PPIC-type PPIASE domain LNQ46_013885 PF09312 SurA N-terminal domain LNQ46_013890 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LNQ46_013895 PF00398 Ribosomal RNA adenine dimethylase LNQ46_013900 PF04379 ApaG domain LNQ46_013905 PF00149 Calcineurin-like phosphoesterase LNQ46_013915 PF00186 Dihydrofolate reductase LNQ46_013920 PF12821 Threonine/Serine exporter, ThrE LNQ46_013925 PF06738 Putative threonine/serine exporter LNQ46_013930 PF01810 LysE type translocator LNQ46_013935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNQ46_013935 PF02142 MGS-like domain LNQ46_013935 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LNQ46_013940 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LNQ46_013940 PF00117 Glutamine amidotransferase class-I LNQ46_013945 PF05173 Dihydrodipicolinate reductase, C-terminus LNQ46_013945 PF01113 Dihydrodipicolinate reductase, N-terminus LNQ46_013950 PF02401 LytB protein LNQ46_013955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ46_013960 PF01252 Signal peptidase (SPase) II LNQ46_013965 PF00133 tRNA synthetases class I (I, L, M and V) LNQ46_013965 PF06827 Zinc finger found in FPG and IleRS LNQ46_013965 PF08264 Anticodon-binding domain of tRNA LNQ46_013970 PF06574 FAD synthetase LNQ46_013970 PF01687 Riboflavin kinase LNQ46_013975 PF01649 Ribosomal protein S20 LNQ46_013980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_013980 PF03466 LysR substrate binding domain LNQ46_013985 PF06965 Na+/H+ antiporter 1 LNQ46_013990 PF00684 DnaJ central domain LNQ46_013990 PF00226 DnaJ domain LNQ46_013990 PF01556 DnaJ C terminal domain LNQ46_013995 PF00012 Hsp70 protein LNQ46_014000 PF01184 GPR1/FUN34/yaaH family LNQ46_014010 PF07690 Major Facilitator Superfamily LNQ46_014015 PF00994 Probable molybdopterin binding domain LNQ46_014020 PF00923 Transaldolase/Fructose-6-phosphate aldolase LNQ46_014025 PF03883 Peroxide stress protein YaaA LNQ46_014030 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_014030 PF14821 Threonine synthase N terminus LNQ46_014035 PF00288 GHMP kinases N terminal domain LNQ46_014035 PF08544 GHMP kinases C terminal LNQ46_014040 PF01842 ACT domain LNQ46_014040 PF03447 Homoserine dehydrogenase, NAD binding domain LNQ46_014040 PF00742 Homoserine dehydrogenase LNQ46_014040 PF13840 ACT domain LNQ46_014040 PF00696 Amino acid kinase family LNQ46_014045 PF08254 Threonine leader peptide LNQ46_014055 PF00486 Transcriptional regulatory protein, C terminal LNQ46_014055 PF00072 Response regulator receiver domain LNQ46_014060 PF05981 CreA protein LNQ46_014065 PF12833 Helix-turn-helix domain LNQ46_014065 PF06445 GyrI-like small molecule binding domain LNQ46_014070 PF00300 Histidine phosphatase superfamily (branch 1) LNQ46_014075 PF01931 Protein of unknown function DUF84 LNQ46_014080 PF01371 Trp repressor protein LNQ46_014085 PF01464 Transglycosylase SLT domain LNQ46_014085 PF14718 Soluble lytic murein transglycosylase L domain LNQ46_014090 PF00689 Cation transporting ATPase, C-terminus LNQ46_014090 PF00690 Cation transporter/ATPase, N-terminus LNQ46_014105 PF12848 ABC transporter LNQ46_014105 PF00005 ABC transporter LNQ46_014110 PF13521 AAA domain LNQ46_014110 PF01381 Helix-turn-helix LNQ46_014115 PF18073 Rubredoxin metal binding domain LNQ46_014120 PF18429 Domain of unknown function (DUF5609) LNQ46_014125 PF10144 Bacterial virulence factor haemolysin LNQ46_014130 PF01048 Phosphorylase superfamily LNQ46_014135 PF01676 Metalloenzyme superfamily LNQ46_014140 PF00591 Glycosyl transferase family, a/b domain LNQ46_014140 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LNQ46_014140 PF02885 Glycosyl transferase family, helical bundle domain LNQ46_014145 PF01791 DeoC/LacD family aldolase LNQ46_014150 PF07670 Nucleoside recognition LNQ46_014150 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ46_014150 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ46_014155 PF01026 TatD related DNase LNQ46_014160 PF01734 Patatin-like phospholipase LNQ46_014165 PF07043 Protein of unknown function (DUF1328) LNQ46_014170 PF04972 BON domain LNQ46_014175 PF00009 Elongation factor Tu GTP binding domain LNQ46_014175 PF03144 Elongation factor Tu domain 2 LNQ46_014175 PF16658 Class II release factor RF3, C-terminal domain LNQ46_014180 PF00583 Acetyltransferase (GNAT) family LNQ46_014185 PF03603 DNA polymerase III psi subunit LNQ46_014190 PF08468 Methyltransferase small domain N-terminal LNQ46_014190 PF05175 Methyltransferase small domain LNQ46_014210 PF07256 Protein of unknown function (DUF1435) LNQ46_014215 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_014220 PF00158 Sigma-54 interaction domain LNQ46_014220 PF00989 PAS fold LNQ46_014220 PF02954 Bacterial regulatory protein, Fis family LNQ46_014225 PF00381 PTS HPr component phosphorylation site LNQ46_014225 PF00391 PEP-utilising enzyme, mobile domain LNQ46_014225 PF05524 PEP-utilising enzyme, N-terminal LNQ46_014225 PF03610 PTS system fructose IIA component LNQ46_014230 PF02734 DAK2 domain LNQ46_014235 PF02733 Dak1 domain LNQ46_014240 PF00465 Iron-containing alcohol dehydrogenase LNQ46_014245 PF00873 AcrB/AcrD/AcrF family LNQ46_014250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ46_014265 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ46_014270 PF10696 Protein of unknown function (DUF2501) LNQ46_014280 PF01116 Fructose-bisphosphate aldolase class-II LNQ46_014290 PF00884 Sulfatase LNQ46_014295 PF13186 Iron-sulfur cluster-binding domain LNQ46_014295 PF04055 Radical SAM superfamily LNQ46_014300 PF07470 Glycosyl Hydrolase Family 88 LNQ46_014310 PF04962 KduI/IolB family LNQ46_014315 PF01979 Amidohydrolase family LNQ46_014325 PF03613 PTS system mannose/fructose/sorbose family IID component LNQ46_014330 PF03609 PTS system sorbose-specific iic component LNQ46_014335 PF03830 PTS system sorbose subfamily IIB component LNQ46_014340 PF01380 SIS domain LNQ46_014345 PF08013 Tagatose 6 phosphate kinase LNQ46_014350 PF00455 DeoR C terminal sensor domain LNQ46_014350 PF08220 DeoR-like helix-turn-helix domain LNQ46_014355 PF00884 Sulfatase LNQ46_014360 PF02278 Polysaccharide lyase family 8, super-sandwich domain LNQ46_014360 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LNQ46_014360 PF09092 Lyase, N terminal LNQ46_014360 PF09093 Lyase, catalytic LNQ46_014375 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain LNQ46_014375 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LNQ46_014375 PF02278 Polysaccharide lyase family 8, super-sandwich domain LNQ46_014380 PF06178 Oligogalacturonate-specific porin protein (KdgM) LNQ46_014385 PF01344 Kelch motif LNQ46_014460 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LNQ46_014465 PF04221 RelB antitoxin LNQ46_014495 PF01420 Type I restriction modification DNA specificity domain LNQ46_014500 PF02384 N-6 DNA Methylase LNQ46_014505 PF08463 EcoEI R protein C-terminal LNQ46_014505 PF04851 Type III restriction enzyme, res subunit LNQ46_014505 PF00271 Helicase conserved C-terminal domain LNQ46_014505 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LNQ46_014520 PF03739 Lipopolysaccharide export system permease LptF/LptG LNQ46_014525 PF03739 Lipopolysaccharide export system permease LptF/LptG LNQ46_014530 PF02789 Cytosol aminopeptidase family, N-terminal domain LNQ46_014530 PF00883 Cytosol aminopeptidase family, catalytic domain LNQ46_014535 PF04364 DNA polymerase III chi subunit, HolC LNQ46_014540 PF10458 Valyl tRNA synthetase tRNA binding arm LNQ46_014540 PF00133 tRNA synthetases class I (I, L, M and V) LNQ46_014540 PF08264 Anticodon-binding domain of tRNA LNQ46_014545 PF00583 Acetyltransferase (GNAT) family LNQ46_014550 PF06877 Regulator of ribonuclease activity B LNQ46_014555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNQ46_014555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNQ46_014560 PF13597 Anaerobic ribonucleoside-triphosphate reductase LNQ46_014560 PF03477 ATP cone domain LNQ46_014570 PF06754 Phosphonate metabolism protein PhnG LNQ46_014575 PF05845 Bacterial phosphonate metabolism protein (PhnH) LNQ46_014580 PF05861 Bacterial phosphonate metabolism protein (PhnI) LNQ46_014585 PF06007 Phosphonate metabolism protein PhnJ LNQ46_014590 PF00005 ABC transporter LNQ46_014595 PF00005 ABC transporter LNQ46_014600 PF07969 Amidohydrolase family LNQ46_014610 PF12706 Beta-lactamase superfamily domain LNQ46_014615 PF13460 NAD(P)H-binding LNQ46_014625 PF10940 Protein of unknown function (DUF2618) LNQ46_014630 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ46_014630 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ46_014630 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ46_014635 PF13520 Amino acid permease LNQ46_014640 PF01541 GIY-YIG catalytic domain LNQ46_014645 PF13508 Acetyltransferase (GNAT) domain LNQ46_014650 PF02036 SCP-2 sterol transfer family LNQ46_014655 PF01136 Peptidase family U32 LNQ46_014660 PF01136 Peptidase family U32 LNQ46_014665 PF03313 Serine dehydratase alpha chain LNQ46_014675 PF00296 Luciferase-like monooxygenase LNQ46_014680 PF00271 Helicase conserved C-terminal domain LNQ46_014680 PF12343 Cold shock protein DEAD box A LNQ46_014680 PF00270 DEAD/DEAH box helicase LNQ46_014680 PF03880 DbpA RNA binding domain LNQ46_014685 PF13181 Tetratricopeptide repeat LNQ46_014685 PF07719 Tetratricopeptide repeat LNQ46_014690 PF00575 S1 RNA binding domain LNQ46_014690 PF03725 3' exoribonuclease family, domain 2 LNQ46_014690 PF01138 3' exoribonuclease family, domain 1 LNQ46_014690 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LNQ46_014690 PF00013 KH domain LNQ46_014695 PF00312 Ribosomal protein S15 LNQ46_014700 PF16198 tRNA pseudouridylate synthase B C-terminal domain LNQ46_014700 PF09157 Pseudouridine synthase II TruB, C-terminal LNQ46_014700 PF01509 TruB family pseudouridylate synthase (N terminal domain) LNQ46_014705 PF02033 Ribosome-binding factor A LNQ46_014710 PF00009 Elongation factor Tu GTP binding domain LNQ46_014710 PF03144 Elongation factor Tu domain 2 LNQ46_014710 PF11987 Translation-initiation factor 2 LNQ46_014710 PF08364 Bacterial translation initiation factor IF-2 associated region LNQ46_014710 PF04760 Translation initiation factor IF-2, N-terminal region LNQ46_014715 PF00575 S1 RNA binding domain LNQ46_014715 PF13184 NusA-like KH domain LNQ46_014715 PF08529 NusA N-terminal domain LNQ46_014720 PF02576 RimP N-terminal domain LNQ46_014720 PF17384 RimP C-terminal SH3 domain LNQ46_014735 PF03840 Preprotein translocase SecG subunit LNQ46_014740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNQ46_014740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNQ46_014740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNQ46_014740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNQ46_014745 PF00809 Pterin binding enzyme LNQ46_014750 PF01434 Peptidase family M41 LNQ46_014750 PF06480 FtsH Extracellular LNQ46_014750 PF17862 AAA+ lid domain LNQ46_014750 PF00004 ATPase family associated with various cellular activities (AAA) LNQ46_014755 PF01728 FtsJ-like methyltransferase LNQ46_014760 PF01985 CRS1 / YhbY (CRM) domain LNQ46_014765 PF03449 Transcription elongation factor, N-terminal LNQ46_014765 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ46_014770 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LNQ46_014775 PF00072 Response regulator receiver domain LNQ46_014775 PF00486 Transcriptional regulatory protein, C terminal LNQ46_014780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_014780 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_014780 PF00672 HAMP domain LNQ46_014785 PF01926 50S ribosome-binding GTPase LNQ46_014785 PF01018 GTP1/OBG LNQ46_014790 PF00892 EamA-like transporter family LNQ46_014795 PF01016 Ribosomal L27 protein LNQ46_014800 PF00829 Ribosomal prokaryotic L21 protein LNQ46_014805 PF00348 Polyprenyl synthetase LNQ46_014820 PF13693 Winged helix-turn-helix DNA-binding LNQ46_014825 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LNQ46_014825 PF00056 lactate/malate dehydrogenase, NAD binding domain LNQ46_014830 PF01316 Arginine repressor, DNA binding domain LNQ46_014830 PF02863 Arginine repressor, C-terminal domain LNQ46_014835 PF08245 Mur ligase middle domain LNQ46_014835 PF01225 Mur ligase family, catalytic domain LNQ46_014835 PF02875 Mur ligase family, glutamate ligase domain LNQ46_014840 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LNQ46_014845 PF00719 Inorganic pyrophosphatase LNQ46_014850 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LNQ46_014855 PF04357 TamB, inner membrane protein subunit of TAM complex LNQ46_014860 PF01103 Surface antigen LNQ46_014860 PF07244 Surface antigen variable number repeat LNQ46_014860 PF17243 POTRA domain TamA domain 1 LNQ46_014865 PF01625 Peptide methionine sulfoxide reductase LNQ46_014870 PF00571 CBS domain LNQ46_014870 PF03471 Transporter associated domain LNQ46_014870 PF01595 Cyclin M transmembrane N-terminal domain LNQ46_014875 PF06526 Protein of unknown function (DUF1107) LNQ46_014880 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LNQ46_014885 PF00459 Inositol monophosphatase family LNQ46_014890 PF02872 5'-nucleotidase, C-terminal domain LNQ46_014890 PF00149 Calcineurin-like phosphoesterase LNQ46_014895 PF01814 Hemerythrin HHE cation binding domain LNQ46_014895 PF04405 Domain of Unknown function (DUF542) LNQ46_014900 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LNQ46_014900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ46_014905 PF08525 Opacity-associated protein A N-terminal motif LNQ46_014905 PF04225 Opacity-associated protein A LysM-like domain LNQ46_014910 PF01281 Ribosomal protein L9, N-terminal domain LNQ46_014910 PF03948 Ribosomal protein L9, C-terminal domain LNQ46_014915 PF01084 Ribosomal protein S18 LNQ46_014920 PF00436 Single-strand binding protein family LNQ46_014925 PF01250 Ribosomal protein S6 LNQ46_014935 PF00326 Prolyl oligopeptidase family LNQ46_014955 PF00577 Outer membrane usher protein LNQ46_014955 PF13953 PapC C-terminal domain LNQ46_014955 PF13954 PapC N-terminal domain LNQ46_014960 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ46_014980 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNQ46_014980 PF00588 SpoU rRNA Methylase family LNQ46_014985 PF00575 S1 RNA binding domain LNQ46_014985 PF00773 RNB domain LNQ46_014985 PF08206 Ribonuclease B OB domain LNQ46_014985 PF08461 Ribonuclease R winged-helix domain LNQ46_014985 PF17876 Cold shock domain LNQ46_014990 PF02082 Transcriptional regulator LNQ46_014995 PF00709 Adenylosuccinate synthetase LNQ46_015000 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LNQ46_015005 PF01145 SPFH domain / Band 7 family LNQ46_015010 PF12221 Bacterial membrane protein N terminal LNQ46_015010 PF01145 SPFH domain / Band 7 family LNQ46_015015 PF01926 50S ribosome-binding GTPase LNQ46_015015 PF13167 GTP-binding GTPase N-terminal LNQ46_015015 PF16360 GTP-binding GTPase Middle Region LNQ46_015020 PF17209 Hfq protein LNQ46_015030 PF08676 MutL C terminal dimerisation domain LNQ46_015030 PF01119 DNA mismatch repair protein, C-terminal domain LNQ46_015035 PF01520 N-acetylmuramoyl-L-alanine amidase LNQ46_015040 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LNQ46_015045 PF03853 YjeF-related protein N-terminus LNQ46_015045 PF01256 Carbohydrate kinase LNQ46_015050 PF08331 Domain of unknown function (DUF1730) LNQ46_015070 PF00929 Exonuclease LNQ46_015075 PF03193 RsgA GTPase LNQ46_015080 PF02666 Phosphatidylserine decarboxylase LNQ46_015085 PF12794 Mechanosensitive ion channel inner membrane domain 1 LNQ46_015085 PF00924 Mechanosensitive ion channel LNQ46_015085 PF12795 Mechanosensitive ion channel porin domain LNQ46_015090 PF00152 tRNA synthetases class II (D, K and N) LNQ46_015095 PF02910 Fumarate reductase flavoprotein C-term LNQ46_015095 PF00890 FAD binding domain LNQ46_015100 PF13183 4Fe-4S dicluster domain LNQ46_015100 PF13085 2Fe-2S iron-sulfur cluster binding domain LNQ46_015105 PF02300 Fumarate reductase subunit C LNQ46_015110 PF02313 Fumarate reductase subunit D LNQ46_015115 PF08212 Lipocalin-like domain LNQ46_015120 PF00893 Small Multidrug Resistance protein LNQ46_015125 PF00419 Fimbrial protein LNQ46_015130 PF00577 Outer membrane usher protein LNQ46_015130 PF13953 PapC C-terminal domain LNQ46_015130 PF13954 PapC N-terminal domain LNQ46_015135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ46_015135 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ46_015145 PF00196 Bacterial regulatory proteins, luxR family LNQ46_015150 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ46_015150 PF18416 N-acetylglucosamine binding protein domain 2 LNQ46_015155 PF08207 Elongation factor P (EF-P) KOW-like domain LNQ46_015155 PF09285 Elongation factor P, C-terminal LNQ46_015155 PF01132 Elongation factor P (EF-P) OB domain LNQ46_015160 PF04055 Radical SAM superfamily LNQ46_015165 PF13698 Domain of unknown function (DUF4156) LNQ46_015170 PF04851 Type III restriction enzyme, res subunit LNQ46_015175 PF01555 DNA methylase LNQ46_015185 PF01443 Viral (Superfamily 1) RNA helicase LNQ46_015185 PF03389 MobA/MobL family LNQ46_015185 PF17841 BID domain of Bartonella effector protein (Bep) LNQ46_015215 PF13356 Arm DNA-binding domain LNQ46_015215 PF00589 Phage integrase family LNQ46_015220 PF00118 TCP-1/cpn60 chaperonin family LNQ46_015225 PF00166 Chaperonin 10 Kd subunit LNQ46_015230 PF04186 FxsA cytoplasmic membrane protein LNQ46_015235 PF10415 Fumarase C C-terminus LNQ46_015235 PF00206 Lyase LNQ46_015240 PF03605 Anaerobic c4-dicarboxylate membrane transporter LNQ46_015245 PF03091 CutA1 divalent ion tolerance protein LNQ46_015250 PF02683 Cytochrome C biogenesis protein transmembrane region LNQ46_015250 PF11412 Disulphide bond corrector protein DsbC LNQ46_015275 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ46_015280 PF01370 NAD dependent epimerase/dehydratase family LNQ46_015285 PF02719 Polysaccharide biosynthesis protein LNQ46_015285 PF08485 Polysaccharide biosynthesis protein C-terminal LNQ46_015290 PF00977 Histidine biosynthesis protein LNQ46_015295 PF00117 Glutamine amidotransferase class-I LNQ46_015300 PF00795 Carbon-nitrogen hydrolase LNQ46_015300 PF02540 NAD synthase LNQ46_015325 PF13472 GDSL-like Lipase/Acylhydrolase family LNQ46_015325 PF02348 Cytidylyltransferase LNQ46_015335 PF00483 Nucleotidyl transferase LNQ46_015345 PF03102 NeuB family LNQ46_015345 PF08666 SAF domain LNQ46_015350 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ46_015355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ46_015360 PF02719 Polysaccharide biosynthesis protein LNQ46_015365 PF01206 Sulfurtransferase TusA LNQ46_015370 PF04143 Sulphur transport LNQ46_015375 PF00375 Sodium:dicarboxylate symporter family LNQ46_015380 PF00501 AMP-binding enzyme LNQ46_015380 PF16177 Acetyl-coenzyme A synthetase N-terminus LNQ46_015380 PF13193 AMP-binding enzyme C-terminal domain LNQ46_015385 PF04341 Protein of unknown function, DUF485 LNQ46_015390 PF00474 Sodium:solute symporter family LNQ46_015420 PF12724 Flavodoxin domain LNQ46_015425 PF02386 Cation transport protein LNQ46_015430 PF09186 Domain of unknown function (DUF1949) LNQ46_015430 PF01205 Uncharacterized protein family UPF0029 LNQ46_015435 PF00557 Metallopeptidase family M24 LNQ46_015440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNQ46_015440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNQ46_015440 PF00378 Enoyl-CoA hydratase/isomerase LNQ46_015445 PF02803 Thiolase, C-terminal domain LNQ46_015445 PF00108 Thiolase, N-terminal domain LNQ46_015450 PF00970 Oxidoreductase FAD-binding domain LNQ46_015450 PF00175 Oxidoreductase NAD-binding domain LNQ46_015455 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LNQ46_015465 PF02357 Transcription termination factor nusG LNQ46_015470 PF00490 Delta-aminolevulinic acid dehydratase LNQ46_015475 PF01026 TatD related DNase LNQ46_015480 PF00902 Sec-independent protein translocase protein (TatC) LNQ46_015490 PF02416 mttA/Hcf106 family LNQ46_015495 PF03109 ABC1 family LNQ46_015500 PF02036 SCP-2 sterol transfer family LNQ46_015505 PF01209 ubiE/COQ5 methyltransferase family LNQ46_015510 PF02646 RmuC family LNQ46_015515 PF09335 SNARE associated Golgi protein LNQ46_015520 PF02554 Carbon starvation protein CstA LNQ46_015520 PF13722 5TM C-terminal transporter carbon starvation CstA LNQ46_015530 PF01048 Phosphorylase superfamily LNQ46_015535 PF01738 Dienelactone hydrolase family LNQ46_015540 PF01717 Cobalamin-independent synthase, Catalytic domain LNQ46_015540 PF08267 Cobalamin-independent synthase, N-terminal domain LNQ46_015545 PF03466 LysR substrate binding domain LNQ46_015545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_015550 PF00892 EamA-like transporter family LNQ46_015560 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ46_015565 PF00005 ABC transporter LNQ46_015565 PF17912 MalK OB fold domain LNQ46_015570 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_015575 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_015580 PF13416 Bacterial extracellular solute-binding protein LNQ46_015615 PF00005 ABC transporter LNQ46_015620 PF12399 Branched-chain amino acid ATP-binding cassette transporter LNQ46_015620 PF00005 ABC transporter LNQ46_015625 PF02653 Branched-chain amino acid transport system / permease component LNQ46_015625 PF11862 Domain of unknown function (DUF3382) LNQ46_015630 PF02653 Branched-chain amino acid transport system / permease component LNQ46_015635 PF13458 Periplasmic binding protein LNQ46_015640 PF12568 Acetyltransferase (GNAT) domain, PanZ LNQ46_015645 PF02595 Glycerate kinase family LNQ46_015650 PF02447 GntP family permease LNQ46_015655 PF13556 PucR C-terminal helix-turn-helix domain LNQ46_015655 PF17853 GGDEF-like domain LNQ46_015655 PF05651 Putative sugar diacid recognition LNQ46_015660 PF00140 Sigma-70 factor, region 1.2 LNQ46_015660 PF04542 Sigma-70 region 2 LNQ46_015660 PF04545 Sigma-70, region 4 LNQ46_015665 PF18075 FtsX extracellular domain LNQ46_015665 PF02687 FtsX-like permease family LNQ46_015670 PF00005 ABC transporter LNQ46_015675 PF02881 SRP54-type protein, helical bundle domain LNQ46_015675 PF00448 SRP54-type protein, GTPase domain LNQ46_015675 PF02881 SRP54-type protein, helical bundle domain LNQ46_015675 PF00448 SRP54-type protein, GTPase domain LNQ46_015685 PF06611 Protein of unknown function (DUF1145) LNQ46_015700 PF07947 YhhN family LNQ46_015705 PF00403 Heavy-metal-associated domain LNQ46_015710 PF01206 Sulfurtransferase TusA LNQ46_015715 PF02592 Putative vitamin uptake transporter LNQ46_015720 PF08786 DcrB LNQ46_015725 PF13183 4Fe-4S dicluster domain LNQ46_015725 PF02754 Cysteine-rich domain LNQ46_015730 PF00890 FAD binding domain LNQ46_015735 PF01266 FAD dependent oxidoreductase LNQ46_015735 PF04324 BFD-like [2Fe-2S] binding domain LNQ46_015745 PF07690 Major Facilitator Superfamily LNQ46_015750 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ46_015760 PF12146 Serine aminopeptidase, S33 LNQ46_015765 PF01810 LysE type translocator LNQ46_015770 PF09382 RQC domain LNQ46_015770 PF16124 RecQ zinc-binding LNQ46_015770 PF00570 HRDC domain LNQ46_015770 PF00271 Helicase conserved C-terminal domain LNQ46_015770 PF00270 DEAD/DEAH box helicase LNQ46_015775 PF02253 Phospholipase A1 LNQ46_015780 PF03061 Thioesterase superfamily LNQ46_015785 PF00892 EamA-like transporter family LNQ46_015790 PF01544 CorA-like Mg2+ transporter protein LNQ46_015800 PF09370 Phosphoenolpyruvate hydrolase-like LNQ46_015815 PF13361 UvrD-like helicase C-terminal domain LNQ46_015815 PF00580 UvrD/REP helicase N-terminal domain LNQ46_015820 PF13419 Haloacid dehalogenase-like hydrolase LNQ46_015825 PF00589 Phage integrase family LNQ46_015825 PF02899 Phage integrase, N-terminal SAM-like domain LNQ46_015830 PF04340 Protein of unknown function, DUF484 LNQ46_015835 PF01678 Diaminopimelate epimerase LNQ46_015840 PF13627 Prokaryotic lipoprotein-attachment site LNQ46_015845 PF01491 Frataxin-like domain LNQ46_015850 PF12633 Adenylate cyclase NT domain LNQ46_015850 PF01295 Adenylate cyclase, class-I LNQ46_015855 PF03900 Porphobilinogen deaminase, C-terminal domain LNQ46_015855 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LNQ46_015860 PF02602 Uroporphyrinogen-III synthase HemD LNQ46_015865 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LNQ46_015870 PF07719 Tetratricopeptide repeat LNQ46_015870 PF07219 HemY protein N-terminus LNQ46_015900 PF00324 Amino acid permease LNQ46_015905 PF03808 Glycosyl transferase WecB/TagA/CpsF family LNQ46_015910 PF06899 WzyE protein, O-antigen assembly polymerase LNQ46_015915 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LNQ46_015920 PF01943 Polysaccharide biosynthesis protein LNQ46_015925 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ46_015935 PF00483 Nucleotidyl transferase LNQ46_015940 PF16363 GDP-mannose 4,6 dehydratase LNQ46_015945 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNQ46_015945 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNQ46_015945 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNQ46_015950 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ46_015955 PF02706 Chain length determinant protein LNQ46_015960 PF00953 Glycosyl transferase family 4 LNQ46_015965 PF07497 Rho termination factor, RNA-binding domain LNQ46_015965 PF07498 Rho termination factor, N-terminal domain LNQ46_015965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ46_015970 PF00085 Thioredoxin LNQ46_015975 PF00271 Helicase conserved C-terminal domain LNQ46_015975 PF00270 DEAD/DEAH box helicase LNQ46_015980 PF02541 Ppx/GppA phosphatase family LNQ46_015985 PF13361 UvrD-like helicase C-terminal domain LNQ46_015985 PF00580 UvrD/REP helicase N-terminal domain LNQ46_015995 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LNQ46_015995 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LNQ46_016000 PF03466 LysR substrate binding domain LNQ46_016000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_016005 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ46_016005 PF18416 N-acetylglucosamine binding protein domain 2 LNQ46_016010 PF00585 C-terminal regulatory domain of Threonine dehydratase LNQ46_016010 PF00291 Pyridoxal-phosphate dependent enzyme LNQ46_016015 PF00920 Dehydratase family LNQ46_016020 PF01063 Amino-transferase class IV LNQ46_016030 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ46_016030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ46_016030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ46_016035 PF08046 IlvGEDA operon leader peptide LNQ46_016040 PF13335 Magnesium chelatase, subunit ChlI C-terminal LNQ46_016040 PF01078 Magnesium chelatase, subunit ChlI LNQ46_016045 PF04219 Protein of unknown function, DUF LNQ46_016050 PF03466 LysR substrate binding domain LNQ46_016050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_016105 PF01177 Asp/Glu/Hydantoin racemase LNQ46_016110 PF00593 TonB dependent receptor LNQ46_016110 PF07715 TonB-dependent Receptor Plug Domain LNQ46_016115 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ46_016120 PF07226 Protein of unknown function (DUF1422) LNQ46_016125 PF00440 Bacterial regulatory proteins, tetR family LNQ46_016130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ46_016130 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_016135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_016135 PF03466 LysR substrate binding domain LNQ46_016140 PF00462 Glutaredoxin LNQ46_016140 PF08534 Redoxin LNQ46_016145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ46_016145 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ46_016165 PF00529 HlyD membrane-fusion protein of T1SS LNQ46_016170 PF00005 ABC transporter LNQ46_016170 PF00664 ABC transporter transmembrane region LNQ46_016180 PF07715 TonB-dependent Receptor Plug Domain LNQ46_016180 PF00593 TonB dependent receptor LNQ46_016185 PF14698 Argininosuccinate lyase C-terminal LNQ46_016185 PF00206 Lyase LNQ46_016190 PF00764 Arginosuccinate synthase LNQ46_016195 PF00696 Amino acid kinase family LNQ46_016200 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ46_016200 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ46_016205 PF07687 Peptidase dimerisation domain LNQ46_016205 PF01546 Peptidase family M20/M25/M40 LNQ46_016210 PF00311 Phosphoenolpyruvate carboxylase LNQ46_016220 PF02219 Methylenetetrahydrofolate reductase LNQ46_016240 PF00696 Amino acid kinase family LNQ46_016240 PF00742 Homoserine dehydrogenase LNQ46_016240 PF03447 Homoserine dehydrogenase, NAD binding domain LNQ46_016245 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ46_016250 PF01340 Met Apo-repressor, MetJ LNQ46_016255 PF01197 Ribosomal protein L31 LNQ46_016260 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LNQ46_016260 PF18074 Primosomal protein N C-terminal domain LNQ46_016260 PF17764 3′ DNA-binding domain (3′BD) LNQ46_016260 PF00271 Helicase conserved C-terminal domain LNQ46_016260 PF00270 DEAD/DEAH box helicase LNQ46_016265 PF00356 Bacterial regulatory proteins, lacI family LNQ46_016270 PF05036 Sporulation related domain LNQ46_016275 PF00227 Proteasome subunit LNQ46_016280 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ46_016280 PF07724 AAA domain (Cdc48 subfamily) LNQ46_016280 PF00004 ATPase family associated with various cellular activities (AAA) LNQ46_016285 PF01040 UbiA prenyltransferase family LNQ46_016290 PF03737 Aldolase/RraA LNQ46_016295 PF06005 Cell division protein ZapB LNQ46_016300 PF00230 Major intrinsic protein LNQ46_016305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNQ46_016305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNQ46_016310 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LNQ46_016315 PF07690 Major Facilitator Superfamily LNQ46_016320 PF00175 Oxidoreductase NAD-binding domain LNQ46_016320 PF00970 Oxidoreductase FAD-binding domain LNQ46_016325 PF05656 Protein of unknown function (DUF805) LNQ46_016330 PF07305 Protein of unknown function (DUF1454) LNQ46_016335 PF00121 Triosephosphate isomerase LNQ46_016345 PF00365 Phosphofructokinase LNQ46_016350 PF16916 Dimerisation domain of Zinc Transporter LNQ46_016350 PF01545 Cation efflux family LNQ46_016355 PF07813 LTXXQ motif family protein LNQ46_016360 PF00486 Transcriptional regulatory protein, C terminal LNQ46_016360 PF00072 Response regulator receiver domain LNQ46_016365 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_016365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_016365 PF00672 HAMP domain LNQ46_016365 PF16527 Two-component sensor protein CpxA, periplasmic domain LNQ46_016370 PF00588 SpoU rRNA Methylase family LNQ46_016375 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ46_016375 PF06426 Serine acetyltransferase, N-terminal LNQ46_016380 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LNQ46_016380 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LNQ46_016385 PF02556 Preprotein translocase subunit SecB LNQ46_016390 PF00462 Glutaredoxin LNQ46_016395 PF00581 Rhodanese-like domain LNQ46_016400 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LNQ46_016400 PF01676 Metalloenzyme superfamily LNQ46_016405 PF01551 Peptidase family M23 LNQ46_016410 PF04748 Divergent polysaccharide deacetylase LNQ46_016415 PF08240 Alcohol dehydrogenase GroES-like domain LNQ46_016415 PF00107 Zinc-binding dehydrogenase LNQ46_016420 PF00155 Aminotransferase class I and II LNQ46_016425 PF01370 NAD dependent epimerase/dehydratase family LNQ46_016430 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ46_016435 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ46_016440 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LNQ46_016445 PF00535 Glycosyl transferase family 2 LNQ46_016450 PF01467 Cytidylyltransferase-like LNQ46_016455 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LNQ46_016455 PF06827 Zinc finger found in FPG and IleRS LNQ46_016455 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LNQ46_016460 PF00471 Ribosomal protein L33 LNQ46_016465 PF00830 Ribosomal L28 family LNQ46_016470 PF04002 RadC-like JAB domain LNQ46_016475 PF02441 Flavoprotein LNQ46_016475 PF04127 DNA / pantothenate metabolism flavoprotein LNQ46_016480 PF00692 dUTPase LNQ46_016485 PF00440 Bacterial regulatory proteins, tetR family LNQ46_016490 PF00156 Phosphoribosyl transferase domain LNQ46_016495 PF03725 3' exoribonuclease family, domain 2 LNQ46_016495 PF01138 3' exoribonuclease family, domain 1 LNQ46_016500 PF03755 YicC-like family, N-terminal region LNQ46_016500 PF08340 Domain of unknown function (DUF1732) LNQ46_016535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ46_016535 PF03466 LysR substrate binding domain LNQ46_016545 PF00990 Diguanylate cyclase, GGDEF domain LNQ46_016545 PF13426 PAS domain LNQ46_016545 PF00563 EAL domain LNQ46_016550 PF00378 Enoyl-CoA hydratase/isomerase LNQ46_016555 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ46_016555 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ46_016555 PF07670 Nucleoside recognition LNQ46_016565 PF03458 UPF0126 domain LNQ46_016570 PF03120 NAD-dependent DNA ligase OB-fold domain LNQ46_016570 PF01653 NAD-dependent DNA ligase adenylation domain LNQ46_016575 PF00625 Guanylate kinase LNQ46_016580 PF01192 RNA polymerase Rpb6 LNQ46_016585 PF13291 ACT domain LNQ46_016585 PF04607 Region found in RelA / SpoT proteins LNQ46_016585 PF02824 TGS domain LNQ46_016590 PF12105 SpoU, rRNA methylase, C-terminal LNQ46_016590 PF00588 SpoU rRNA Methylase family LNQ46_016595 PF17191 RecG wedge domain LNQ46_016595 PF00270 DEAD/DEAH box helicase LNQ46_016595 PF00271 Helicase conserved C-terminal domain LNQ46_016600 PF03616 Sodium/glutamate symporter LNQ46_016605 PF00860 Permease family LNQ46_016610 PF05170 AsmA family LNQ46_016615 PF00583 Acetyltransferase (GNAT) family LNQ46_016615 PF09500 Putative thioesterase (yiiD_Cterm) LNQ46_016620 PF02580 D-Tyr-tRNA(Tyr) deacylase LNQ46_016625 PF03631 Virulence factor BrkB LNQ46_016630 PF13419 Haloacid dehalogenase-like hydrolase LNQ46_016635 PF00009 Elongation factor Tu GTP binding domain LNQ46_016635 PF03144 Elongation factor Tu domain 2 LNQ46_016635 PF00679 Elongation factor G C-terminus LNQ46_016640 PF03951 Glutamine synthetase, beta-Grasp domain LNQ46_016640 PF00120 Glutamine synthetase, catalytic domain LNQ46_016645 PF00512 His Kinase A (phospho-acceptor) domain LNQ46_016645 PF00989 PAS fold LNQ46_016645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ46_016650 PF02954 Bacterial regulatory protein, Fis family LNQ46_016650 PF00072 Response regulator receiver domain LNQ46_016650 PF00158 Sigma-54 interaction domain LNQ46_016655 PF06969 HemN C-terminal domain LNQ46_016655 PF04055 Radical SAM superfamily LNQ46_016660 PF04220 Der GTPase activator (YihI) LNQ46_016665 PF01926 50S ribosome-binding GTPase LNQ46_016670 PF01367 5'-3' exonuclease, C-terminal SAM fold LNQ46_016670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNQ46_016670 PF00476 DNA polymerase family A LNQ46_016670 PF01612 3'-5' exonuclease LNQ46_016675 PF01323 DSBA-like thioredoxin domain LNQ46_016680 PF01636 Phosphotransferase enzyme family LNQ46_016685 PF06288 Protein of unknown function (DUF1040) LNQ46_016690 PF12804 MobA-like NTP transferase domain LNQ46_016695 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LNQ46_016720 PF07729 FCD domain LNQ46_016720 PF00392 Bacterial regulatory proteins, gntR family LNQ46_016725 PF00356 Bacterial regulatory proteins, lacI family LNQ46_016730 PF00294 pfkB family carbohydrate kinase LNQ46_016735 PF13407 Periplasmic binding protein domain LNQ46_016740 PF02653 Branched-chain amino acid transport system / permease component LNQ46_016745 PF00005 ABC transporter LNQ46_016750 PF05025 RbsD / FucU transport protein family LNQ46_016755 PF02705 K+ potassium transporter LNQ46_016760 PF17868 AAA lid domain LNQ46_016760 PF12592 Protein of unknown function (DUF3763) LNQ46_016760 PF07728 AAA domain (dynein-related subfamily) LNQ46_016765 PF05762 VWA domain containing CoxE-like protein LNQ46_016775 PF03590 Aspartate-ammonia ligase LNQ46_016780 PF01037 Lrp/AsnC ligand binding domain LNQ46_016785 PF00258 Flavodoxin LNQ46_016790 PF01134 Glucose inhibited division protein A LNQ46_016790 PF13932 GidA associated domain LNQ46_016795 PF02527 rRNA small subunit methyltransferase G LNQ46_016800 PF03899 ATP synthase I chain LNQ46_016805 PF00119 ATP synthase A chain LNQ46_016810 PF00137 ATP synthase subunit C LNQ46_016815 PF00430 ATP synthase B/B' CF(0) LNQ46_016820 PF00213 ATP synthase delta (OSCP) subunit LNQ46_016825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ46_016825 PF00306 ATP synthase alpha/beta chain, C terminal domain LNQ46_016825 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ46_016830 PF00231 ATP synthase LNQ46_016835 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ46_016835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ46_016840 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LNQ46_016840 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LNQ46_016845 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ46_016845 PF12804 MobA-like NTP transferase domain LNQ46_016850 PF01380 SIS domain LNQ46_016855 PF12849 PBP superfamily domain LNQ46_016860 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_016865 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_016870 PF00005 ABC transporter LNQ46_016875 PF01895 PhoU domain LNQ46_016880 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ46_016885 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_016890 PF00528 Binding-protein-dependent transport system inner membrane component LNQ46_016895 PF00860 Permease family LNQ46_016900 PF02203 Tar ligand binding domain homologue LNQ46_016900 PF00672 HAMP domain LNQ46_016900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ46_016910 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ46_016910 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ46_016915 PF13954 PapC N-terminal domain LNQ46_016915 PF13953 PapC C-terminal domain LNQ46_016915 PF00577 Outer membrane usher protein LNQ46_016925 PF01926 50S ribosome-binding GTPase LNQ46_016925 PF12631 MnmE helical domain LNQ46_016925 PF10396 GTP-binding protein TrmE N-terminus LNQ46_016930 PF02096 60Kd inner membrane protein LNQ46_016930 PF14849 YidC periplasmic domain LNQ46_016935 PF01809 Putative membrane protein insertion efficiency factor LNQ46_016940 PF00825 Ribonuclease P LNQ46_016945 PF00468 Ribosomal protein L34 LNQ46_016950 PF03389 MobA/MobL family LNQ46_016950 PF16793 RepB DNA-primase from phage plasmid