locus-tag	class	description
LNQ46_000010	COG0592	DNA-directed DNA polymerase activity
LNQ46_000020	COG0187	DNA topoisomerase II activity
LNQ46_000025	COG0561	phosphatase activity
LNQ46_000030	COG0823	Involved in the tonB-independent uptake of proteins
LNQ46_000035	COG5645	(Lipo)protein
LNQ46_000050	COG0569	domain protein
LNQ46_000050	COG2985	domain, Protein
LNQ46_000055	COG3977	Valine--pyruvate aminotransferase
LNQ46_000060	COG2885	chlorophyll binding
LNQ46_000080	COG2818	Glycosylase
LNQ46_000130	COG2213	PTS system mannitol-specific
LNQ46_000130	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ46_000140	COG3722	fumarate hydratase activity
LNQ46_000150	COG2258	MOSC domain
LNQ46_000155	COG0840	transmembrane signaling receptor activity
LNQ46_000160	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LNQ46_000175	COG0437	4 iron, 4 sulfur cluster binding
LNQ46_000180	COG2864	formate dehydrogenase
LNQ46_000190	COG1921	L-seryl-tRNASec selenium transferase activity
LNQ46_000195	COG3276	selenocysteine insertion sequence binding
LNQ46_000200	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
LNQ46_000210	COG3274	enterobacterial common antigen metabolic process
LNQ46_000245	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LNQ46_000250	COG2986	histidine ammonia-lyase
LNQ46_000270	COG2194	sulfuric ester hydrolase activity
LNQ46_000275	COG2197	response regulator
LNQ46_000280	COG3851	Histidine kinase
LNQ46_000285	COG2271	Major facilitator Superfamily
LNQ46_000295	COG0747	negative chemotaxis
LNQ46_000300	COG0601	transmembrane transport
LNQ46_000305	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNQ46_000310	COG0444	Belongs to the ABC transporter superfamily
LNQ46_000315	COG4608	Belongs to the ABC transporter superfamily
LNQ46_000320	COG2194	sulfuric ester hydrolase activity
LNQ46_000345	COG1215	transferase activity, transferring glycosyl groups
LNQ46_000350	COG1215	transferase activity, transferring glycosyl groups
LNQ46_000355	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LNQ46_000360	COG0457	Tetratricopeptide repeat
LNQ46_000360	COG3118	belongs to the thioredoxin family
LNQ46_000365	COG2199	diguanylate cyclase activity
LNQ46_000365	COG2200	EAL domain
LNQ46_000370	COG1301	dicarboxylic acid transport
LNQ46_000375	COG0612	Peptidase, M16
LNQ46_000380	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LNQ46_000385	COG1942	4-Oxalocrotonate Tautomerase
LNQ46_000390	COG2200	EAL domain
LNQ46_000395	COG2134	cdp-diacylglycerol pyrophosphatase
LNQ46_000400	COG1295	ribonuclease BN
LNQ46_000410	COG1301	dicarboxylic acid transport
LNQ46_000415	COG0626	cystathionine gamma-synthase activity
LNQ46_000445	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNQ46_000450	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LNQ46_000455	COG0339	signal peptide processing
LNQ46_000460	COG0742	ribosomal rna small subunit methyltransferase
LNQ46_000470	COG0589	response to stress
LNQ46_000480	COG0306	phosphate transporter
LNQ46_000485	COG2081	HI0933 family
LNQ46_000495	COG1247	-acetyltransferase
LNQ46_000500	COG1741	Belongs to the pirin family
LNQ46_000505	COG1609	Transcriptional regulator
LNQ46_000510	COG2610	gluconate transmembrane transporter activity
LNQ46_000515	COG3265	gluconokinase activity
LNQ46_000520	COG2095	MarC family integral membrane protein
LNQ46_000525	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LNQ46_000530	COG3275	phosphorelay sensor kinase activity
LNQ46_000535	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LNQ46_000540	COG1523	belongs to the glycosyl hydrolase 13 family
LNQ46_000545	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LNQ46_000550	COG0297	glycogen (starch) synthase activity
LNQ46_000555	COG0058	SHG alpha-glucan phosphorylase activity
LNQ46_000560	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LNQ46_000565	COG1349	DNA-binding transcription factor activity
LNQ46_000570	COG0705	Rhomboid family
LNQ46_000580	COG2909	trisaccharide binding
LNQ46_000585	COG0058	SHG alpha-glucan phosphorylase activity
LNQ46_000590	COG1640	4-alpha-glucanotransferase
LNQ46_000600	COG1040	competence protein
LNQ46_000605	COG0596	Alpha beta hydrolase
LNQ46_000625	COG1918	ferrous iron import across plasma membrane
LNQ46_000630	COG2183	response to ionizing radiation
LNQ46_000655	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LNQ46_000670	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LNQ46_000680	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LNQ46_000685	COG1011	Hydrolase
LNQ46_000695	COG0494	nUDIX hydrolase
LNQ46_000700	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LNQ46_000725	COG4796	Type ii and iii secretion system protein
LNQ46_000730	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LNQ46_000750	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LNQ46_000760	COG0180	Tryptophanyl-tRNA synthetase
LNQ46_000780	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LNQ46_000785	COG0402	S-adenosylhomocysteine deaminase activity
LNQ46_000790	COG0738	Major facilitator superfamily
LNQ46_000805	COG1609	Transcriptional regulator
LNQ46_000810	COG1486	melibiose metabolic process
LNQ46_000815	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LNQ46_000830	COG1289	transmembrane transporter activity
LNQ46_000835	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LNQ46_000840	COG1765	OsmC-like protein
LNQ46_000865	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LNQ46_000870	COG3954	Phosphoribulokinase
LNQ46_000880	COG0429	hydrolase of the alpha beta-hydrolase fold
LNQ46_000890	COG0859	PFAM glycosyl transferase family 9
LNQ46_000895	COG1216	Glycosyl transferase, family 2
LNQ46_000900	COG0488	(ABC) transporter
LNQ46_000905	COG2249	NAD(P)H dehydrogenase (quinone) activity
LNQ46_000915	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LNQ46_000920	COG1047	Peptidyl-prolyl cis-trans
LNQ46_000930	COG0545	Peptidyl-prolyl cis-trans isomerase
LNQ46_000935	COG2964	Protein conserved in bacteria
LNQ46_000945	COG2923	Belongs to the DsrF TusC family
LNQ46_000950	COG2168	tRNA wobble position uridine thiolation
LNQ46_000955	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LNQ46_000960	COG0049	tRNA binding
LNQ46_000970	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LNQ46_000985	COG0051	transcription antitermination factor activity, RNA binding
LNQ46_000990	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LNQ46_001000	COG0089	rRNA binding
LNQ46_001005	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LNQ46_001010	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LNQ46_001015	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LNQ46_001025	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LNQ46_001030	COG0255	Belongs to the universal ribosomal protein uL29 family
LNQ46_001035	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LNQ46_001040	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LNQ46_001050	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LNQ46_001075	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LNQ46_001080	COG1841	ribosomal large subunit assembly
LNQ46_001085	COG0200	Binds to the 23S rRNA
LNQ46_001090	COG0201	protein transport
LNQ46_001095	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LNQ46_001100	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LNQ46_001110	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LNQ46_001120	COG0203	ribosomal protein L17
LNQ46_001125	COG0789	Transcriptional regulator
LNQ46_001130	COG3036	rescue of stalled ribosome
LNQ46_001135	COG1970	mechanosensitive ion channel activity
LNQ46_001145	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LNQ46_001145	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LNQ46_001150	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LNQ46_001155	COG0242	peptide deformylase activity
LNQ46_001160	COG0758	DNA mediated transformation
LNQ46_001165	COG2922	Belongs to the Smg family
LNQ46_001170	COG0551	DNA topoisomerase type I activity
LNQ46_001175	COG0009	L-threonylcarbamoyladenylate synthase
LNQ46_001185	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LNQ46_001210	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LNQ46_001255	COG0250	Participates in transcription elongation, termination and antitermination
LNQ46_001260	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LNQ46_001270	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LNQ46_001275	COG0222	ribosome binding
LNQ46_001280	COG0085	RNA polymerase activity
LNQ46_001285	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LNQ46_001295	COG2022	thiamine diphosphate biosynthetic process
LNQ46_001300	COG2104	thiamine diphosphate biosynthetic process
LNQ46_001305	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LNQ46_001320	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
LNQ46_001325	COG2816	NAD+ diphosphatase activity
LNQ46_001330	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LNQ46_001335	COG1515	deoxyribonuclease V activity
LNQ46_001355	COG0151	Belongs to the GarS family
LNQ46_001360	COG0138	bifunctional purine biosynthesis protein purh
LNQ46_001400	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LNQ46_001435	COG0583	DNA-binding transcription factor activity
LNQ46_001515	COG1222	aaa ATPase
LNQ46_001540	COG0527	aspartate kinase activity
LNQ46_001550	COG3223	Belongs to the PsiE family
LNQ46_001555	COG3833	ABC-type maltose transport systems, permease component
LNQ46_001560	COG1175	transmembrane transport
LNQ46_001565	COG2182	Extracellular solute-binding protein
LNQ46_001580	COG4580	involved in the transport of maltose and maltodextrins
LNQ46_001600	COG2937	Belongs to the GPAT DAPAT family
LNQ46_001605	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LNQ46_001610	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LNQ46_001615	COG0735	belongs to the Fur family
LNQ46_001620	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LNQ46_001630	COG0604	alcohol dehydrogenase
LNQ46_001645	COG1448	Aminotransferase
LNQ46_001650	COG2315	Protein conserved in bacteria
LNQ46_001655	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LNQ46_001670	COG2252	PERMEase
LNQ46_001675	COG0025	NhaP-type Na H and K H
LNQ46_001680	COG0583	DNA-binding transcription factor activity
LNQ46_001685	COG1380	Effector of murein hydrolase LrgA
LNQ46_001690	COG1346	cytolysis
LNQ46_001700	COG1560	Kdo2-lipid A biosynthetic process
LNQ46_001710	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LNQ46_001715	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LNQ46_001720	COG2264	protein methyltransferase activity
LNQ46_001725	COG4145	pantothenate transmembrane transporter activity
LNQ46_001730	COG3924	membrane
LNQ46_001735	COG0439	Biotin carboxylase
LNQ46_001740	COG0511	ligase activity, forming carbon-carbon bonds
LNQ46_001750	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
LNQ46_001755	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LNQ46_001760	COG0604	alcohol dehydrogenase
LNQ46_001765	COG2199	diguanylate cyclase activity
LNQ46_001765	COG2200	EAL domain
LNQ46_001770	COG1077	Cell shape determining protein MreB Mrl
LNQ46_001775	COG1792	Involved in formation and maintenance of cell shape
LNQ46_001780	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LNQ46_001785	COG0424	maF-like protein
LNQ46_001795	COG3164	Protein of unknown function
LNQ46_001800	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNQ46_001805	COG0312	modulator of DNA gyrase
LNQ46_001810	COG0583	DNA-binding transcription factor activity
LNQ46_001820	COG1566	PFAM secretion protein HlyD family protein
LNQ46_001825	COG1289	transmembrane transporter activity
LNQ46_001835	COG4290	ribonuclease
LNQ46_001840	COG2732	(Barnase) inhibitor
LNQ46_001845	COG3028	Belongs to the UPF0307 family
LNQ46_001850	COG0312	modulator of DNA gyrase
LNQ46_001855	COG3783	Cytochrome b(562)
LNQ46_001860	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LNQ46_001870	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LNQ46_001880	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ46_001880	COG1263	PTS System
LNQ46_001885	COG0366	Alpha amylase catalytic
LNQ46_001895	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LNQ46_001900	COG0540	Belongs to the ATCase OTCase family
LNQ46_001905	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ46_001925	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LNQ46_001930	COG1137	ATPase activity
LNQ46_001935	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LNQ46_001940	COG3117	lipopolysaccharide transmembrane transporter activity
LNQ46_001945	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LNQ46_001950	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LNQ46_001950	COG0517	IMP dehydrogenase activity
LNQ46_001955	COG0530	calcium, potassium:sodium antiporter activity
LNQ46_001960	COG1127	ABC transporter
LNQ46_001965	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LNQ46_001970	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LNQ46_001975	COG2854	intermembrane phospholipid transfer
LNQ46_001980	COG3113	response to antibiotic
LNQ46_001985	COG5007	Belongs to the BolA IbaG family
LNQ46_001990	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LNQ46_002000	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LNQ46_002005	COG3105	Protein conserved in bacteria
LNQ46_002010	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LNQ46_002015	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LNQ46_002020	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LNQ46_002025	COG0625	glutathione transferase activity
LNQ46_002030	COG2969	positive regulation of protein catabolic process
LNQ46_002040	COG0493	'glutamate synthase
LNQ46_002045	COG0067	glutamate synthase
LNQ46_002045	COG0069	glutamate synthase activity
LNQ46_002045	COG0070	glutamate synthase
LNQ46_002050	COG1242	4 iron, 4 sulfur cluster binding
LNQ46_002055	COG5002	protein histidine kinase activity
LNQ46_002055	COG0784	Response regulator, receiver
LNQ46_002055	COG2198	Histidine kinase
LNQ46_002060	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
LNQ46_002065	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LNQ46_002070	COG2823	Periplasmic or secreted lipoprotein
LNQ46_002075	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LNQ46_002090	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LNQ46_002105	COG1741	Belongs to the pirin family
LNQ46_002110	COG0583	DNA-binding transcription factor activity
LNQ46_002115	COG2259	Doxx family
LNQ46_002125	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
LNQ46_002130	COG4575	ribosome binding
LNQ46_002145	COG0586	Pfam SNARE associated Golgi protein
LNQ46_002160	COG2271	Major facilitator Superfamily
LNQ46_002175	COG2721	sulfolactate sulfo-lyase activity
LNQ46_002185	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LNQ46_002190	COG0861	Integral membrane protein TerC family
LNQ46_002195	COG0673	inositol 2-dehydrogenase activity
LNQ46_002200	COG1451	nucleotide metabolic process
LNQ46_002215	COG0446	pyridine nucleotide-disulphide oxidoreductase
LNQ46_002215	COG1902	pentaerythritol trinitrate reductase activity
LNQ46_002220	COG2831	hemolysin activation secretion protein
LNQ46_002225	COG3210	domain, Protein
LNQ46_002250	COG0463	Glycosyl transferase, family 2
LNQ46_002280	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ46_002325	COG4983	Phage plasmid primase, P4 family domain protein
LNQ46_002380	COG4974	Belongs to the 'phage' integrase family
LNQ46_002440	COG4695	Portal protein
LNQ46_002575	COG0358	DNA primase activity
LNQ46_002580	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LNQ46_002585	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LNQ46_002590	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LNQ46_002595	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LNQ46_002600	COG1968	undecaprenyl-diphosphatase activity
LNQ46_002605	COG0617	tRNA 3'-terminal CCA addition
LNQ46_002610	COG4991	sh3 domain protein
LNQ46_002615	COG3025	triphosphatase activity
LNQ46_002625	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LNQ46_002625	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LNQ46_002635	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LNQ46_002640	COG3384	dioxygenase
LNQ46_002645	COG0754	glutathionylspermidine amidase activity
LNQ46_002650	COG5463	Belongs to the UPF0441 family
LNQ46_002655	COG1538	Outer membrane efflux protein
LNQ46_002660	COG0494	nUDIX hydrolase
LNQ46_002665	COG3151	Protein conserved in bacteria
LNQ46_002670	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LNQ46_002675	COG3150	esterase
LNQ46_002680	COG0187	DNA topoisomerase II activity
LNQ46_002685	COG0583	DNA-binding transcription factor activity
LNQ46_002690	COG2249	NAD(P)H dehydrogenase (quinone) activity
LNQ46_002695	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LNQ46_002705	COG2132	Multicopper oxidase
LNQ46_002715	COG0656	L-ascorbic acid biosynthetic process
LNQ46_002720	COG1979	alcohol dehydrogenase
LNQ46_002725	COG2207	Transcriptional regulator
LNQ46_002730	COG0586	Pfam SNARE associated Golgi protein
LNQ46_002735	COG0626	cystathionine gamma-synthase activity
LNQ46_002740	COG0811	peptide transport
LNQ46_002745	COG0848	biopolymer transport protein
LNQ46_002795	COG4964	Belongs to the GSP D family
LNQ46_002820	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LNQ46_002825	COG4774	siderophore transport
LNQ46_002835	COG3251	PFAM MbtH domain protein
LNQ46_002840	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LNQ46_002850	COG1120	ATPase activity
LNQ46_002855	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ46_002860	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ46_002870	COG4592	Periplasmic binding protein
LNQ46_002875	COG1169	isochorismate synthase
LNQ46_002880	COG1021	2,3-dihydroxybenzoate-AMP ligase
LNQ46_002885	COG1535	isochorismatase
LNQ46_002885	COG3433	isochorismatase activity
LNQ46_002890	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ46_002905	COG0814	amino acid
LNQ46_002910	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LNQ46_002915	COG1882	Formate acetyltransferase
LNQ46_002920	COG1105	Belongs to the carbohydrate kinase PfkB family
LNQ46_002955	COG0741	lytic transglycosylase activity
LNQ46_002960	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LNQ46_002965	COG1194	a g-specific adenine glycosylase
LNQ46_002975	COG3171	Protein conserved in bacteria
LNQ46_002990	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LNQ46_002995	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LNQ46_003000	COG1872	DUF167
LNQ46_003005	COG0762	integral membrane protein
LNQ46_003010	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LNQ46_003015	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LNQ46_003020	COG2805	Type II/IV secretion system protein
LNQ46_003030	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNQ46_003035	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LNQ46_003040	COG1678	Uncharacterized ACR, COG1678
LNQ46_003045	COG0189	ligase activity
LNQ46_003050	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LNQ46_003055	COG2356	endonuclease I
LNQ46_003060	COG3091	SprT-like family
LNQ46_003065	COG0640	Transcriptional regulator
LNQ46_003080	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LNQ46_003085	COG1166	arginine decarboxylase activity
LNQ46_003095	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LNQ46_003100	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LNQ46_003105	COG0126	phosphoglycerate kinase activity
LNQ46_003110	COG0191	fructose-bisphosphate aldolase activity
LNQ46_003120	COG1279	arginine transmembrane transporter activity
LNQ46_003135	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LNQ46_003140	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LNQ46_003145	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LNQ46_003155	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LNQ46_003165	COG0006	proline dipeptidase activity
LNQ46_003170	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LNQ46_003175	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LNQ46_003180	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LNQ46_003200	COG1272	protein, Hemolysin III
LNQ46_003210	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LNQ46_003220	COG0716	FMN binding
LNQ46_003225	COG4974	Belongs to the 'phage' integrase family
LNQ46_003230	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LNQ46_003235	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LNQ46_003245	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LNQ46_003255	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LNQ46_003260	COG1127	ABC transporter
LNQ46_003290	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LNQ46_003300	COG2165	general secretion pathway protein
LNQ46_003355	COG0583	DNA-binding transcription factor activity
LNQ46_003360	COG0583	DNA-binding transcription factor activity
LNQ46_003370	COG1609	Transcriptional regulator
LNQ46_003375	COG0204	Acyl-transferase
LNQ46_003375	COG0318	PFAM AMP-dependent synthetase and ligase
LNQ46_003380	COG0477	Major facilitator Superfamily
LNQ46_003385	COG0667	Aldo Keto reductase
LNQ46_003390	COG0861	Integral membrane protein TerC family
LNQ46_003395	COG3066	DNA modification
LNQ46_003405	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
LNQ46_003410	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LNQ46_003435	COG4967	type IV pilus modification protein PilV
LNQ46_003440	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LNQ46_003445	COG1025	Belongs to the peptidase M16 family
LNQ46_003450	COG1074	ATP-dependent DNA helicase activity
LNQ46_003455	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LNQ46_003460	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LNQ46_003460	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LNQ46_003465	COG0860	N-Acetylmuramoyl-L-alanine amidase
LNQ46_003485	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
LNQ46_003490	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LNQ46_003495	COG2166	iron-sulfur cluster assembly
LNQ46_003500	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LNQ46_003510	COG0583	DNA-binding transcription factor activity
LNQ46_003515	COG2363	Small membrane protein
LNQ46_003520	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
LNQ46_003530	COG1611	Belongs to the LOG family
LNQ46_003545	COG3098	single-species biofilm formation
LNQ46_003550	COG0564	pseudouridine synthase activity
LNQ46_003565	COG2171	N-acyltransferase activity
LNQ46_003570	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LNQ46_003585	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LNQ46_003590	COG0528	UMP kinase activity
LNQ46_003610	COG0575	Belongs to the CDS family
LNQ46_003615	COG0750	zinc metalloprotease
LNQ46_003625	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
LNQ46_003630	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LNQ46_003650	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LNQ46_003655	COG0587	DNA-directed DNA polymerase activity
LNQ46_003660	COG0825	malonyl-CoA metabolic process
LNQ46_003675	COG0346	lactoylglutathione lyase activity
LNQ46_003690	COG4568	rho-dependent transcription termination
LNQ46_003700	COG4681	YaeQ
LNQ46_003710	COG3015	lipoprotein NlpE involved in copper resistance
LNQ46_003715	COG0442	prolyl-tRNA aminoacylation
LNQ46_003720	COG1720	tRNA m6t6A37 methyltransferase activity
LNQ46_003730	COG1464	Belongs to the NlpA lipoprotein family
LNQ46_003735	COG2011	ABC-type metal ion transport system permease component
LNQ46_003745	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LNQ46_003775	COG3021	interspecies interaction between organisms
LNQ46_003780	COG1388	LysM domain
LNQ46_003780	COG0741	lytic transglycosylase activity
LNQ46_003790	COG2226	methyltransferase
LNQ46_003800	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LNQ46_003810	COG1960	acyl-CoA dehydrogenase activity
LNQ46_003815	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LNQ46_003820	COG0121	glutamine amidotransferase
LNQ46_003825	COG3034	peptidoglycan biosynthetic process
LNQ46_003835	COG1805	sodium ion transport
LNQ46_003840	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LNQ46_003845	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LNQ46_003850	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LNQ46_003860	COG1477	protein flavinylation
LNQ46_003865	COG2991	Protein conserved in bacteria
LNQ46_003875	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LNQ46_003880	COG2195	Cleaves the N-terminal amino acid of tripeptides
LNQ46_003885	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LNQ46_003890	COG1073	alpha beta
LNQ46_003905	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LNQ46_003940	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LNQ46_003960	COG4126	flavin adenine dinucleotide binding
LNQ46_003970	COG2974	May be involved in recombination
LNQ46_003975	COG1940	carbohydrate kinase activity
LNQ46_003980	COG0419	ATPase involved in DNA repair
LNQ46_003985	COG0420	3'-5' exonuclease activity
LNQ46_003990	COG0745	RESPONSE REGULATOR receiver
LNQ46_003995	COG5002	protein histidine kinase activity
LNQ46_004010	COG1113	amino acid transport
LNQ46_004015	COG0366	Alpha amylase catalytic
LNQ46_004020	COG0300	oxidoreductase activity
LNQ46_004025	COG0450	alkyl hydroperoxide reductase
LNQ46_004030	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
LNQ46_004045	COG1862	Preprotein translocase
LNQ46_004050	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LNQ46_004055	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LNQ46_004060	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LNQ46_004065	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LNQ46_004065	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LNQ46_004070	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LNQ46_004080	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LNQ46_004085	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LNQ46_004090	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LNQ46_004095	COG0142	geranyltranstransferase activity
LNQ46_004130	COG0693	protein deglycase activity
LNQ46_004135	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LNQ46_004140	COG1666	GTP binding
LNQ46_004145	COG2814	Major facilitator Superfamily
LNQ46_004155	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LNQ46_004160	COG1845	cytochrome c oxidase, subunit III
LNQ46_004165	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LNQ46_004170	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LNQ46_004180	COG2223	nitrite transmembrane transporter activity
LNQ46_004185	COG3056	Lipoprotein
LNQ46_004190	COG0271	Belongs to the BolA IbaG family
LNQ46_004200	COG0740	serine-type endopeptidase activity
LNQ46_004205	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LNQ46_004210	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LNQ46_004215	COG0776	regulation of translation
LNQ46_004220	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LNQ46_004225	COG1555	photosystem II stabilization
LNQ46_004230	COG0824	Thioesterase
LNQ46_004235	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LNQ46_004240	COG4533	DNA binding
LNQ46_004255	COG1522	sequence-specific DNA binding
LNQ46_004260	COG1132	(ABC) transporter
LNQ46_004265	COG1132	(ABC) transporter
LNQ46_004270	COG0347	Belongs to the P(II) protein family
LNQ46_004275	COG0004	ammonium transporteR
LNQ46_004280	COG1946	Acyl-CoA thioesterase
LNQ46_004285	COG3695	enzyme binding
LNQ46_004310	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LNQ46_004315	COG0254	rRNA binding
LNQ46_004320	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LNQ46_004325	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ46_004330	COG1309	transcriptional regulator
LNQ46_004335	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
LNQ46_004340	COG1196	nuclear chromosome segregation
LNQ46_004340	COG3264	Mechanosensitive ion channel
LNQ46_004355	COG2832	Protein of unknown function (DUF454)
LNQ46_004360	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LNQ46_004400	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LNQ46_004405	COG0326	Molecular chaperone. Has ATPase activity
LNQ46_004420	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
LNQ46_004425	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LNQ46_004430	COG4651	solute:proton antiporter activity
LNQ46_004430	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LNQ46_004435	COG0737	Belongs to the 5'-nucleotidase family
LNQ46_004440	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LNQ46_004445	COG3735	TraB family
LNQ46_004450	COG2217	Heavy metal translocating P-type atpase
LNQ46_004455	COG0789	Transcriptional regulator
LNQ46_004460	COG1585	Membrane protein implicated in regulation of membrane protease activity
LNQ46_004465	COG0330	HflC and HflK could
LNQ46_004470	COG3118	belongs to the thioredoxin family
LNQ46_004475	COG0300	oxidoreductase activity
LNQ46_004480	COG2755	lipolytic protein G-D-S-L family
LNQ46_004485	COG4181	ATPase activity
LNQ46_004490	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LNQ46_004495	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LNQ46_004500	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LNQ46_004505	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LNQ46_004510	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LNQ46_004540	COG3188	usher protein
LNQ46_004545	COG3121	Chaperone
LNQ46_004575	COG2501	S4 domain
LNQ46_004580	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LNQ46_004595	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LNQ46_004600	COG1393	Belongs to the ArsC family
LNQ46_004610	COG1022	Amp-dependent synthetase and ligase
LNQ46_004635	COG3038	cytochrome b561
LNQ46_004665	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LNQ46_004675	COG1215	transferase activity, transferring glycosyl groups
LNQ46_004695	COG3250	beta-galactosidase activity
LNQ46_004710	COG1309	transcriptional regulator
LNQ46_004740	COG2197	response regulator
LNQ46_004745	COG1278	Cold shock
LNQ46_004765	COG3706	GGDEF domain
LNQ46_004775	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LNQ46_004785	COG2921	Belongs to the UPF0250 family
LNQ46_004790	COG1686	Belongs to the peptidase S11 family
LNQ46_004795	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LNQ46_004800	COG0772	Belongs to the SEDS family
LNQ46_004805	COG0768	penicillin binding
LNQ46_004810	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LNQ46_004815	COG0799	negative regulation of ribosome biogenesis
LNQ46_004820	COG0582	viral genome integration into host DNA
LNQ46_004875	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LNQ46_004970	COG3772	lysozyme
LNQ46_005060	COG0739	heme binding
LNQ46_005060	COG1196	nuclear chromosome segregation
LNQ46_005060	COG0741	lytic transglycosylase activity
LNQ46_005110	COG5301	cellulose 1,4-beta-cellobiosidase activity
LNQ46_005120	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LNQ46_005125	COG1466	dna polymerase III delta subunit
LNQ46_005130	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
LNQ46_005140	COG2888	peptidyl-tyrosine sulfation
LNQ46_005145	COG1126	abc transporter atp-binding protein
LNQ46_005150	COG0765	amino acid transport
LNQ46_005155	COG0765	amino acid transport
LNQ46_005165	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LNQ46_005170	COG4535	Mg2 and Co2 transporter CorC
LNQ46_005175	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LNQ46_005180	COG1702	phosphate starvation-inducible protein PhoH
LNQ46_005185	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LNQ46_005190	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LNQ46_005225	COG0367	asparagine synthase
LNQ46_005230	COG0647	UMP catabolic process
LNQ46_005235	COG1940	carbohydrate kinase activity
LNQ46_005235	COG1846	Transcriptional regulator
LNQ46_005240	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LNQ46_005250	COG1263	PTS System
LNQ46_005250	COG2190	(PTS) system
LNQ46_005250	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ46_005275	COG0735	belongs to the Fur family
LNQ46_005285	COG0840	transmembrane signaling receptor activity
LNQ46_005295	COG0596	Alpha beta hydrolase
LNQ46_005300	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
LNQ46_005305	COG0033	Phosphoglucomutase
LNQ46_005315	COG0745	RESPONSE REGULATOR receiver
LNQ46_005320	COG2205	protein histidine kinase activity
LNQ46_005325	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
LNQ46_005330	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
LNQ46_005350	COG3272	Protein of unknown function (DUF1722)
LNQ46_005355	COG0415	Belongs to the DNA photolyase family
LNQ46_005360	COG5212	phosphodiesterase
LNQ46_005365	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LNQ46_005370	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LNQ46_005375	COG1984	allophanate hydrolase subunit 2
LNQ46_005380	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LNQ46_005415	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LNQ46_005420	COG1053	succinate dehydrogenase
LNQ46_005425	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LNQ46_005430	COG0567	Dehydrogenase, E1 component
LNQ46_005435	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNQ46_005440	COG0045	succinate-CoA ligase (ADP-forming) activity
LNQ46_005445	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LNQ46_005450	COG0737	Belongs to the 5'-nucleotidase family
LNQ46_005455	COG1271	oxidase subunit
LNQ46_005460	COG1294	oxidase, subunit
LNQ46_005465	COG4890	Cyd operon protein YbgT
LNQ46_005470	COG3790	cyd operon protein YbgE
LNQ46_005475	COG0824	Thioesterase
LNQ46_005480	COG0811	peptide transport
LNQ46_005485	COG0848	biopolymer transport protein
LNQ46_005490	COG3064	Membrane
LNQ46_005490	COG3064	Membrane
LNQ46_005495	COG0823	Involved in the tonB-independent uptake of proteins
LNQ46_005500	COG2885	chlorophyll binding
LNQ46_005505	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
LNQ46_005535	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LNQ46_005545	COG2205	protein histidine kinase activity
LNQ46_005545	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ46_005555	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LNQ46_005560	COG0588	phosphoglycerate mutase activity
LNQ46_005570	COG2017	converts alpha-aldose to the beta-anomer
LNQ46_005580	COG1085	galactose-1-phosphate uridylyltransferase
LNQ46_005585	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LNQ46_005600	COG3585	molybdate ion transport
LNQ46_005600	COG2005	Transcriptional regulator
LNQ46_005610	COG0725	ABC transporter, periplasmic molybdate-binding protein
LNQ46_005615	COG4149	molybdate abc transporter
LNQ46_005625	COG0561	phosphatase activity
LNQ46_005630	COG2706	6-phosphogluconolactonase activity
LNQ46_005645	COG0156	8-amino-7-oxononanoate synthase activity
LNQ46_005650	COG2226	methyltransferase
LNQ46_005665	COG0556	nucleotide-excision repair
LNQ46_005670	COG4628	conserved protein (DUF2132)
LNQ46_005685	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ46_005690	COG1120	ATPase activity
LNQ46_005695	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LNQ46_005700	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LNQ46_005710	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LNQ46_005715	COG0314	molybdopterin synthase activity
LNQ46_005720	COG0670	Belongs to the BI1 family
LNQ46_005725	COG0842	Transport permease protein
LNQ46_005730	COG0842	Transport permease protein
LNQ46_005735	COG1131	(ABC) transporter
LNQ46_005740	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ46_005745	COG1309	transcriptional regulator
LNQ46_005750	COG0513	Belongs to the DEAD box helicase family
LNQ46_005755	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LNQ46_005765	COG1686	Belongs to the peptidase S11 family
LNQ46_005770	COG0277	FAD linked oxidase domain protein
LNQ46_005790	COG2261	transglycosylase associated protein
LNQ46_005800	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
LNQ46_005810	COG3639	organic phosphonate transmembrane transporter activity
LNQ46_005815	COG4807	Protein conserved in bacteria
LNQ46_005820	COG2897	thiosulfate sulfurtransferase activity
LNQ46_005825	COG1732	Glycine betaine
LNQ46_005830	COG1174	glycine betaine transport
LNQ46_005835	COG1125	glycine betaine transport
LNQ46_005840	COG1174	glycine betaine transport
LNQ46_005845	COG0531	amino acid
LNQ46_005850	COG1982	Orn Lys Arg decarboxylase major
LNQ46_005860	COG0697	spore germination
LNQ46_005875	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LNQ46_005880	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
LNQ46_005885	COG1126	abc transporter atp-binding protein
LNQ46_005890	COG0765	amino acid transport
LNQ46_005895	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ46_005915	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LNQ46_005920	COG2239	Acts as a magnesium transporter
LNQ46_005925	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LNQ46_005930	COG0488	(ABC) transporter
LNQ46_005935	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LNQ46_005940	COG0303	'Molybdopterin
LNQ46_005960	COG0583	DNA-binding transcription factor activity
LNQ46_005965	COG0477	Major facilitator Superfamily
LNQ46_005970	COG0302	gtp cyclohydrolase
LNQ46_005975	COG2311	Membrane
LNQ46_006000	COG2949	membrane
LNQ46_006005	COG0281	malic enzyme
LNQ46_006015	COG0583	DNA-binding transcription factor activity
LNQ46_006025	COG1346	cytolysis
LNQ46_006030	COG1380	Effector of murein hydrolase LrgA
LNQ46_006040	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LNQ46_006040	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LNQ46_006045	COG0489	protein tyrosine kinase activity
LNQ46_006050	COG0572	uridine kinase
LNQ46_006055	COG0717	Belongs to the dCTP deaminase family
LNQ46_006060	COG2982	Protein involved in outer membrane biogenesis
LNQ46_006065	COG3069	C4-dicarboxylate transmembrane transporter activity
LNQ46_006070	COG1253	flavin adenine dinucleotide binding
LNQ46_006075	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LNQ46_006080	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LNQ46_006085	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LNQ46_006095	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LNQ46_006095	COG0140	phosphoribosyl-ATP diphosphatase activity
LNQ46_006105	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LNQ46_006120	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LNQ46_006125	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LNQ46_006140	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LNQ46_006145	COG0625	glutathione transferase activity
LNQ46_006160	COG0626	cystathionine gamma-synthase activity
LNQ46_006170	COG1686	Belongs to the peptidase S11 family
LNQ46_006175	COG1760	l-serine dehydratase
LNQ46_006180	COG0814	amino acid
LNQ46_006185	COG1349	DNA-binding transcription factor activity
LNQ46_006195	COG0671	phosphoesterase, PA-phosphatase related
LNQ46_006205	COG0569	domain protein
LNQ46_006205	COG2985	domain, Protein
LNQ46_006225	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LNQ46_006230	COG3842	ATPase activity
LNQ46_006235	COG1176	ABC-type spermidine putrescine transport system, permease component I
LNQ46_006240	COG1177	transmembrane transport
LNQ46_006255	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ46_006260	COG4160	amino acid transport
LNQ46_006265	COG4215	(ABC) transporter
LNQ46_006270	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ46_006275	COG1126	abc transporter atp-binding protein
LNQ46_006285	COG0393	Putative heavy-metal-binding
LNQ46_006290	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LNQ46_006295	COG0702	epimerase
LNQ46_006300	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LNQ46_006305	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LNQ46_006310	COG1151	hydroxylamine reductase activity
LNQ46_006315	COG2431	L-lysine efflux transmembrane transporter activity
LNQ46_006320	COG3593	DNA synthesis involved in DNA repair
LNQ46_006325	COG2990	Protein conserved in bacteria
LNQ46_006330	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ46_006340	COG1278	Cold shock
LNQ46_006345	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LNQ46_006350	COG0542	response to heat
LNQ46_006355	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LNQ46_006365	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LNQ46_006375	COG0492	ferredoxin-NADP+ reductase activity
LNQ46_006380	COG1522	sequence-specific DNA binding
LNQ46_006385	COG1674	ftsk spoiiie
LNQ46_006385	COG3107	peptidoglycan biosynthetic process
LNQ46_006390	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LNQ46_006395	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LNQ46_006400	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LNQ46_006405	COG2814	Major facilitator Superfamily
LNQ46_006410	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LNQ46_006415	COG1882	Formate acetyltransferase
LNQ46_006420	COG2116	formate transmembrane transporter activity
LNQ46_006425	COG1944	ATP diphosphatase activity
LNQ46_006430	COG0252	asparaginase activity
LNQ46_006440	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LNQ46_006450	COG0539	negative regulation of cytoplasmic translation
LNQ46_006460	COG2333	competence protein COMEC
LNQ46_006460	COG0658	competence protein
LNQ46_006470	COG1663	tetraacyldisaccharide 4'-kinase activity
LNQ46_006475	COG5383	Protein conserved in bacteria
LNQ46_006485	COG1278	Cold shock
LNQ46_006490	COG2835	tetraacyldisaccharide 4'-kinase activity
LNQ46_006495	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LNQ46_006500	COG3173	Aminoglycoside phosphotransferase
LNQ46_006505	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LNQ46_006510	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LNQ46_006515	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
LNQ46_006525	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LNQ46_006530	COG2989	Protein conserved in bacteria
LNQ46_006535	COG3108	Peptidase M15
LNQ46_006540	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LNQ46_006545	COG1448	Aminotransferase
LNQ46_006560	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LNQ46_006565	COG0308	aminopeptidase N
LNQ46_006570	COG0167	dihydroorotate dehydrogenase activity
LNQ46_006580	COG3217	Mosc domain protein beta barrel domain protein
LNQ46_006580	COG0633	Ferredoxin
LNQ46_006585	COG0116	Belongs to the methyltransferase superfamily
LNQ46_006585	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LNQ46_006590	COG0488	(ABC) transporter
LNQ46_006595	COG2995	paraquat-inducible protein a
LNQ46_006600	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LNQ46_006600	COG3008	intermembrane lipid transfer
LNQ46_006605	COG3009	Protein conserved in bacteria
LNQ46_006610	COG3130	regulation of translation
LNQ46_006615	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LNQ46_006620	COG1067	ATP-dependent peptidase activity
LNQ46_006625	COG3120	sequence-specific DNA binding
LNQ46_006635	COG5404	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division
LNQ46_006640	COG3070	regulator of competence-specific genes
LNQ46_006645	COG1289	transmembrane transporter activity
LNQ46_006650	COG3304	Inner membrane component domain
LNQ46_006655	COG0210	DNA helicase
LNQ46_006660	COG1803	Methylglyoxal synthase
LNQ46_006670	COG1832	CoA-binding protein
LNQ46_006675	COG3785	DNA binding
LNQ46_006680	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LNQ46_006685	COG1254	Belongs to the acylphosphatase family
LNQ46_006690	COG2920	part of a sulfur-relay system
LNQ46_006700	COG0288	reversible hydration of carbon dioxide
LNQ46_006720	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
LNQ46_006725	COG2943	transferase activity, transferring hexosyl groups
LNQ46_006745	COG1560	Kdo2-lipid A biosynthetic process
LNQ46_006755	COG0628	permease
LNQ46_006780	COG0418	dihydroorotase activity
LNQ46_006785	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LNQ46_006795	COG1530	ribonuclease E activity
LNQ46_006800	COG0564	pseudouridine synthase activity
LNQ46_006805	COG0424	maF-like protein
LNQ46_006810	COG1399	metal-binding, possibly nucleic acid-binding protein
LNQ46_006815	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LNQ46_006825	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LNQ46_006830	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LNQ46_006840	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LNQ46_006845	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LNQ46_006850	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LNQ46_006855	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LNQ46_006860	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LNQ46_006865	COG0470	DNA polymerase III
LNQ46_006870	COG0084	hydrolase, TatD family'
LNQ46_006875	COG1263	PTS System
LNQ46_006875	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ46_006880	COG0537	adenosine 5'-monophosphoramidase activity
LNQ46_006885	COG5633	Lipoprotein
LNQ46_006890	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
LNQ46_006905	COG3150	esterase
LNQ46_006910	COG1252	NADH dehydrogenase
LNQ46_006915	COG3134	Outer membrane lipoprotein
LNQ46_006920	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LNQ46_006925	COG4591	ABC-type transport system involved in lipoprotein release permease component
LNQ46_006935	COG4591	ABC-type transport system involved in lipoprotein release permease component
LNQ46_006955	COG2850	peptidyl-arginine hydroxylation
LNQ46_006960	COG2205	protein histidine kinase activity
LNQ46_006965	COG0745	RESPONSE REGULATOR receiver
LNQ46_006975	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LNQ46_006985	COG0482	sulfurtransferase activity
LNQ46_006995	COG1187	pseudouridine synthase activity
LNQ46_007000	COG0538	isocitrate dehydrogenase activity
LNQ46_007005	COG2771	luxR family
LNQ46_007010	COG3916	Acyl-homoserine-lactone synthase
LNQ46_007015	COG2723	6-phospho-beta-galactosidase activity
LNQ46_007025	COG0339	signal peptide processing
LNQ46_007030	COG0840	transmembrane signaling receptor activity
LNQ46_007035	COG3493	citrate carrier protein
LNQ46_007040	COG4565	transcriptional regulatory protein
LNQ46_007045	COG3290	protein histidine kinase activity
LNQ46_007050	COG0471	metal ion transport
LNQ46_007090	COG4977	sequence-specific DNA binding
LNQ46_007095	COG1702	phosphate starvation-inducible protein PhoH
LNQ46_007100	COG0387	Pfam Sodium calcium exchanger
LNQ46_007105	COG2375	cellular response to nickel ion
LNQ46_007110	COG3850	Histidine kinase
LNQ46_007120	COG1294	oxidase, subunit
LNQ46_007125	COG1271	oxidase subunit
LNQ46_007130	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LNQ46_007135	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LNQ46_007140	COG3138	arginine N-succinyltransferase
LNQ46_007150	COG3724	N-succinylarginine dihydrolase activity
LNQ46_007170	COG1228	amidohydrolase
LNQ46_007180	COG0402	S-adenosylhomocysteine deaminase activity
LNQ46_007200	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
LNQ46_007205	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
LNQ46_007210	COG3383	formate dehydrogenase (NAD+) activity
LNQ46_007215	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ46_007220	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
LNQ46_007230	COG3260	NADH ubiquinone oxidoreductase 20
LNQ46_007235	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ46_007240	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
LNQ46_007240	COG3261	NADH dehydrogenase
LNQ46_007245	COG0650	Formate hydrogenlyase subunit 4
LNQ46_007250	COG0651	ATP synthesis coupled electron transport
LNQ46_007255	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ46_007265	COG0375	protein maturation
LNQ46_007270	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
LNQ46_007275	COG0298	carbon dioxide binding
LNQ46_007280	COG0409	Hydrogenase expression formation protein
LNQ46_007285	COG0309	Hydrogenase expression formation protein (HypE)
LNQ46_007320	COG2207	Transcriptional regulator
LNQ46_007320	COG3708	Transcriptional regulator
LNQ46_007325	COG0012	GTP binding
LNQ46_007335	COG0193	aminoacyl-tRNA hydrolase activity
LNQ46_007345	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LNQ46_007355	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LNQ46_007360	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LNQ46_007365	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LNQ46_007370	COG2890	protein-(glutamine-N5) methyltransferase activity
LNQ46_007385	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LNQ46_007390	COG0659	secondary active sulfate transmembrane transporter activity
LNQ46_007395	COG3706	GGDEF domain
LNQ46_007420	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LNQ46_007430	COG3381	protein complex oligomerization
LNQ46_007450	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNQ46_007460	COG0673	inositol 2-dehydrogenase activity
LNQ46_007465	COG0728	peptidoglycan biosynthetic process
LNQ46_007490	COG3102	Protein conserved in bacteria
LNQ46_007495	COG3142	Participates in the control of copper homeostasis
LNQ46_007510	COG3788	relative of glutathione S-transferase, MAPEG superfamily
LNQ46_007515	COG1801	Protein of unknown function DUF72
LNQ46_007525	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LNQ46_007530	COG0494	nUDIX hydrolase
LNQ46_007540	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LNQ46_007550	COG2255	four-way junction helicase activity
LNQ46_007555	COG3104	oligopeptide transport
LNQ46_007560	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LNQ46_007565	COG1121	(ABC) transporter
LNQ46_007570	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
LNQ46_007575	COG0739	heme binding
LNQ46_007580	COG1560	Kdo2-lipid A biosynthetic process
LNQ46_007585	COG0469	pyruvate kinase activity
LNQ46_007590	COG1737	Transcriptional regulator
LNQ46_007595	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LNQ46_007600	COG0800	Aldolase
LNQ46_007610	COG2076	Multidrug Resistance protein
LNQ46_007615	COG0251	oxidation-reduction process
LNQ46_007620	COG1199	ATP-dependent helicase activity
LNQ46_007625	COG1214	PFAM Peptidase M22, glycoprotease
LNQ46_007630	COG3065	identical protein binding
LNQ46_007635	COG0318	PFAM AMP-dependent synthetase and ligase
LNQ46_007640	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LNQ46_007645	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LNQ46_007650	COG2894	cell division
LNQ46_007655	COG0850	regulation of cytokinetic process
LNQ46_007660	COG3100	YcgL domain-containing protein
LNQ46_007665	COG0179	Fumarylacetoacetate (FAA) hydrolase
LNQ46_007670	COG2983	Belongs to the UPF0260 family
LNQ46_007690	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LNQ46_007700	COG2719	SpoVR family
LNQ46_007705	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LNQ46_007710	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LNQ46_007715	COG2814	Major facilitator Superfamily
LNQ46_007725	COG2200	EAL domain
LNQ46_007725	COG2199	diguanylate cyclase activity
LNQ46_007725	COG2202	Pas domain
LNQ46_007745	COG2718	Belongs to the UPF0229 family
LNQ46_007750	COG2766	serine protein kinase
LNQ46_007760	COG3713	MltA-interacting MipA family protein
LNQ46_007765	COG2194	sulfuric ester hydrolase activity
LNQ46_007780	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LNQ46_007785	COG3139	Protein of unknown function (DUF1315)
LNQ46_007790	COG1335	isochorismatase
LNQ46_007795	COG0252	asparaginase activity
LNQ46_007800	COG0616	signal peptide processing
LNQ46_007805	COG0778	Nitroreductase
LNQ46_007815	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LNQ46_007825	COG0494	nUDIX hydrolase
LNQ46_007830	COG0708	Exodeoxyribonuclease III
LNQ46_007860	COG0788	formyltetrahydrofolate deformylase activity
LNQ46_007870	COG1752	Esterase of the alpha-beta hydrolase superfamily
LNQ46_007875	COG0745	RESPONSE REGULATOR receiver
LNQ46_007895	COG1012	belongs to the aldehyde dehydrogenase family
LNQ46_007895	COG1454	alcohol dehydrogenase
LNQ46_007905	COG2095	MarC family integral membrane protein
LNQ46_007910	COG4166	transmembrane transport
LNQ46_007925	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNQ46_007940	COG3099	Belongs to the UPF0263 family
LNQ46_007945	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LNQ46_007965	COG2350	Protein conserved in bacteria
LNQ46_007980	COG3710	Transcriptional regulator
LNQ46_008015	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LNQ46_008040	COG0727	PFAM Uncharacterised protein family (UPF0153)
LNQ46_008045	COG3047	cAMP biosynthetic process
LNQ46_008060	COG0133	tryptophan synthase activity
LNQ46_008065	COG0134	indole-3-glycerol-phosphate synthase activity
LNQ46_008065	COG0135	phosphoribosylanthranilate isomerase activity
LNQ46_008075	COG0512	Glutamine amidotransferase of anthranilate synthase
LNQ46_008085	COG0613	PHP domain protein
LNQ46_008090	COG0009	L-threonylcarbamoyladenylate synthase
LNQ46_008095	COG1187	pseudouridine synthase activity
LNQ46_008105	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ46_008110	COG0616	signal peptide processing
LNQ46_008125	COG0583	DNA-binding transcription factor activity
LNQ46_008150	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LNQ46_008160	COG0671	phosphoesterase, PA-phosphatase related
LNQ46_008165	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
LNQ46_008170	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LNQ46_008190	COG0023	Translation Initiation Factor
LNQ46_008200	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LNQ46_008205	COG5002	protein histidine kinase activity
LNQ46_008205	COG5001	Diguanylate cyclase
LNQ46_008205	COG3447	MASE1 domain protein
LNQ46_008210	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
LNQ46_008215	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LNQ46_008225	COG4659	FMN binding
LNQ46_008235	COG2207	Transcriptional regulator
LNQ46_008235	COG3708	Transcriptional regulator
LNQ46_008250	COG4657	Part of a membrane complex involved in electron transport
LNQ46_008260	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LNQ46_008270	COG0673	inositol 2-dehydrogenase activity
LNQ46_008275	COG0385	Bile acid
LNQ46_008280	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LNQ46_008285	COG5339	Protein conserved in bacteria
LNQ46_008290	COG1482	cell wall glycoprotein biosynthetic process
LNQ46_008295	COG0114	fumarate hydratase activity
LNQ46_008305	COG1940	carbohydrate kinase activity
LNQ46_008310	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LNQ46_008330	COG1742	UPF0060 membrane protein
LNQ46_008335	COG4221	oxidoreductase activity
LNQ46_008340	COG3023	N-Acetylmuramoyl-L-alanine amidase
LNQ46_008360	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LNQ46_008400	COG1011	Hydrolase
LNQ46_008410	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
LNQ46_008415	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LNQ46_008420	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LNQ46_008425	COG0589	response to stress
LNQ46_008455	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
LNQ46_008460	COG3623	hexulose-6-phosphate isomerase
LNQ46_008465	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LNQ46_008470	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LNQ46_008480	COG0531	amino acid
LNQ46_008490	COG0745	RESPONSE REGULATOR receiver
LNQ46_008495	COG2205	protein histidine kinase activity
LNQ46_008510	COG2207	Transcriptional regulator
LNQ46_008515	COG1881	PFAM PEBP family protein
LNQ46_008525	COG3591	Belongs to the peptidase S1B family
LNQ46_008530	COG1643	Atp-dependent helicase
LNQ46_008535	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LNQ46_008540	COG3784	Protein of unknown function (DUF1318)
LNQ46_008555	COG2911	Protein conserved in bacteria
LNQ46_008560	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LNQ46_008565	COG3187	Heat shock protein
LNQ46_008570	COG3042	response to heat
LNQ46_008575	COG1285	pathogenesis
LNQ46_008585	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ46_008585	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LNQ46_008585	COG0674	pyruvate-flavodoxin oxidoreductase activity
LNQ46_008585	COG1013	pyruvate-flavodoxin oxidoreductase activity
LNQ46_008600	COG4166	transmembrane transport
LNQ46_008605	COG2866	Carboxypeptidase
LNQ46_008610	COG4948	Mandelate Racemase Muconate Lactonizing
LNQ46_008615	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LNQ46_008625	COG5642	Protein of unknown function (DUF2384)
LNQ46_008630	COG5654	RES domain protein
LNQ46_008635	COG3768	UPF0283 membrane protein
LNQ46_008640	COG3106	COG3106 Predicted ATPase
LNQ46_008650	COG1983	PspC domain protein
LNQ46_008660	COG1842	Phage shock protein A
LNQ46_008665	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LNQ46_008680	COG4166	transmembrane transport
LNQ46_008690	COG4171	peptide transport system, permease
LNQ46_008695	COG4172	Belongs to the ABC transporter superfamily
LNQ46_008700	COG4172	Belongs to the ABC transporter superfamily
LNQ46_008710	COG3104	oligopeptide transport
LNQ46_008720	COG0484	heat shock protein binding
LNQ46_008765	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LNQ46_008770	COG3133	Outer membrane lipoprotein
LNQ46_008775	COG1846	Transcriptional regulator
LNQ46_008785	COG4989	oxidoreductase activity
LNQ46_008790	COG3313	Fe-S protein
LNQ46_008795	COG2194	sulfuric ester hydrolase activity
LNQ46_008800	COG1309	transcriptional regulator
LNQ46_008805	COG1902	pentaerythritol trinitrate reductase activity
LNQ46_008820	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LNQ46_008825	COG0791	NLP P60 protein
LNQ46_008830	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LNQ46_008840	COG1609	Transcriptional regulator
LNQ46_008845	COG0583	DNA-binding transcription factor activity
LNQ46_008850	COG2814	Major facilitator Superfamily
LNQ46_008855	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LNQ46_008860	COG0307	riboflavin synthase, alpha
LNQ46_008895	COG1388	LysM domain
LNQ46_008895	COG1376	ErfK ybiS ycfS ynhG family protein
LNQ46_008900	COG2166	iron-sulfur cluster assembly
LNQ46_008910	COG0719	Fe-S assembly protein
LNQ46_008915	COG0396	ATPase activity
LNQ46_008920	COG0719	Fe-S assembly protein
LNQ46_008925	COG0316	Belongs to the HesB IscA family
LNQ46_008930	COG2050	protein possibly involved in aromatic compounds catabolism
LNQ46_008935	COG0247	lactate metabolic process
LNQ46_008935	COG0277	FAD linked oxidase domain protein
LNQ46_008940	COG0628	permease
LNQ46_008950	COG0574	Belongs to the PEP-utilizing enzyme family
LNQ46_008950	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNQ46_008955	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LNQ46_008960	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LNQ46_008970	COG4771	TonB-dependent receptor
LNQ46_008975	COG3720	iron ion transport
LNQ46_008980	COG4558	Periplasmic binding protein
LNQ46_008985	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ46_008990	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LNQ46_009000	COG0095	Lipoate-protein ligase
LNQ46_009005	COG0791	NLP P60 protein
LNQ46_009010	COG2076	Multidrug Resistance protein
LNQ46_009015	COG2076	Multidrug Resistance protein
LNQ46_009020	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LNQ46_009035	COG0463	Glycosyl transferase, family 2
LNQ46_009040	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LNQ46_009050	COG4139	cobalamin transport
LNQ46_009055	COG4974	Belongs to the 'phage' integrase family
LNQ46_009095	COG0776	regulation of translation
LNQ46_009165	COG0803	Belongs to the bacterial solute-binding protein 9 family
LNQ46_009170	COG1121	(ABC) transporter
LNQ46_009175	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LNQ46_009180	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LNQ46_009185	COG3001	Fructosamine kinase
LNQ46_009195	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LNQ46_009200	COG1988	membrane-bound metal-dependent
LNQ46_009205	COG1823	symporter activity
LNQ46_009210	COG3023	N-Acetylmuramoyl-L-alanine amidase
LNQ46_009220	COG2814	Major facilitator Superfamily
LNQ46_009230	COG0501	Belongs to the peptidase M48B family
LNQ46_009235	COG0793	Belongs to the peptidase S41A family
LNQ46_009245	COG1956	GAF domain-containing protein
LNQ46_009250	COG2995	paraquat-inducible protein a
LNQ46_009255	COG3008	intermembrane lipid transfer
LNQ46_009260	COG2203	Gaf domain
LNQ46_009260	COG3706	GGDEF domain
LNQ46_009260	COG4251	negative regulation of phosphorylation
LNQ46_009260	COG5001	Diguanylate cyclase
LNQ46_009340	COG1276	copper resistance
LNQ46_009345	COG2372	response to copper ion
LNQ46_009350	COG1528	Iron-storage protein
LNQ46_009365	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LNQ46_009370	COG1770	oligopeptidase
LNQ46_009380	COG3097	Belongs to the UPF0267 family
LNQ46_009385	COG3141	response to X-ray
LNQ46_009390	COG0513	Belongs to the DEAD box helicase family
LNQ46_009410	COG0494	nUDIX hydrolase
LNQ46_009415	COG1760	l-serine dehydratase
LNQ46_009420	COG1253	flavin adenine dinucleotide binding
LNQ46_009425	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ46_009425	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ46_009430	COG3715	PTS system
LNQ46_009435	COG3716	PTS system mannose fructose sorbose family IID component
LNQ46_009440	COG4811	Protein of unknown function (DUF986)
LNQ46_009445	COG1971	Probably functions as a manganese efflux pump
LNQ46_009465	COG1960	acyl-CoA dehydrogenase activity
LNQ46_009475	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
LNQ46_009505	COG2226	methyltransferase
LNQ46_009510	COG0768	penicillin binding
LNQ46_009515	COG1496	oxidoreductase activity
LNQ46_009535	COG1113	amino acid transport
LNQ46_009570	COG2207	Transcriptional regulator
LNQ46_009590	COG1132	(ABC) transporter
LNQ46_009600	COG5001	Diguanylate cyclase
LNQ46_009600	COG3706	GGDEF domain
LNQ46_009600	COG4251	negative regulation of phosphorylation
LNQ46_009600	COG2203	Gaf domain
LNQ46_009620	COG1181	Belongs to the D-alanine--D-alanine ligase family
LNQ46_009640	COG1278	Cold shock
LNQ46_009645	COG1278	Cold shock
LNQ46_009650	COG1278	Cold shock
LNQ46_009665	COG2169	Transcriptional regulator
LNQ46_009665	COG1917	Cupin 2, conserved barrel domain protein
LNQ46_009670	COG1447	Phosphotransferase system cellobiose-specific component IIA
LNQ46_009675	COG2723	6-phospho-beta-galactosidase activity
LNQ46_009680	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LNQ46_009685	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LNQ46_009690	COG1187	pseudouridine synthase activity
LNQ46_009705	COG3122	Protein conserved in bacteria
LNQ46_009710	COG1757	Na H antiporter
LNQ46_009740	COG0076	glutamate decarboxylase activity
LNQ46_009745	COG0531	amino acid
LNQ46_009780	COG2153	protein acetylation
LNQ46_009785	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LNQ46_009815	COG0840	transmembrane signaling receptor activity
LNQ46_009820	COG2801	Transposase and inactivated derivatives
LNQ46_009950	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LNQ46_009955	COG0322	excinuclease ABC activity
LNQ46_009960	COG2197	response regulator
LNQ46_009985	COG1113	amino acid transport
LNQ46_009995	COG0531	amino acid
LNQ46_010000	COG3710	Transcriptional regulator
LNQ46_010005	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LNQ46_010010	COG0506	proline dehydrogenase activity
LNQ46_010010	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LNQ46_010010	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LNQ46_010015	COG1126	abc transporter atp-binding protein
LNQ46_010020	COG0765	amino acid transport
LNQ46_010025	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ46_010030	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LNQ46_010040	COG1191	sigma factor activity
LNQ46_010075	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LNQ46_010080	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LNQ46_010095	COG1677	Flagellar hook-basal body complex protein FliE
LNQ46_010105	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LNQ46_010115	COG1157	protein secretion by the type III secretion system
LNQ46_010130	COG1580	Controls the rotational direction of flagella during chemotaxis
LNQ46_010210	COG1558	bacterial-type flagellum-dependent cell motility
LNQ46_010215	COG1815	bacterial-type flagellum-dependent cell motility
LNQ46_010225	COG2747	anti-sigma28 factor FlgM
LNQ46_010230	COG3418	PFAM FlgN family protein
LNQ46_010240	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LNQ46_010245	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LNQ46_010250	COG1404	Belongs to the peptidase S8 family
LNQ46_010250	COG4935	Belongs to the peptidase S8 family
LNQ46_010255	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
LNQ46_010260	COG0745	RESPONSE REGULATOR receiver
LNQ46_010270	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LNQ46_010275	COG0840	transmembrane signaling receptor activity
LNQ46_010280	COG0840	transmembrane signaling receptor activity
LNQ46_010285	COG0835	chemotaxis
LNQ46_010290	COG2198	Histidine kinase
LNQ46_010290	COG0643	Histidine kinase
LNQ46_010295	COG1360	Flagellar Motor Protein
LNQ46_010315	COG0589	response to stress
LNQ46_010320	COG1285	pathogenesis
LNQ46_010325	COG0840	transmembrane signaling receptor activity
LNQ46_010340	COG1609	Transcriptional regulator
LNQ46_010350	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ46_010350	COG3321	synthase
LNQ46_010350	COG0604	alcohol dehydrogenase
LNQ46_010405	COG0471	metal ion transport
LNQ46_010420	COG3051	citrate lyase alpha subunit
LNQ46_010425	COG2301	Belongs to the HpcH HpaI aldolase family
LNQ46_010430	COG3052	prosthetic group binding
LNQ46_010435	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
LNQ46_010440	COG3290	protein histidine kinase activity
LNQ46_010445	COG4565	transcriptional regulatory protein
LNQ46_010460	COG2271	Major facilitator Superfamily
LNQ46_010465	COG1840	ABC-type Fe3 transport system, periplasmic component
LNQ46_010475	COG3842	ATPase activity
LNQ46_010495	COG1289	transmembrane transporter activity
LNQ46_010505	COG2925	Exonuclease
LNQ46_010510	COG0531	amino acid
LNQ46_010515	COG4771	TonB-dependent receptor
LNQ46_010525	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ46_010535	COG0833	amino acid
LNQ46_010540	COG0583	DNA-binding transcription factor activity
LNQ46_010550	COG2855	membrane
LNQ46_010555	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LNQ46_010560	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LNQ46_010560	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LNQ46_010560	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LNQ46_010565	COG1105	Belongs to the carbohydrate kinase PfkB family
LNQ46_010580	COG3005	denitrification pathway
LNQ46_010585	COG0243	molybdopterin cofactor binding
LNQ46_010600	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LNQ46_010610	COG0246	Mannitol dehydrogenase
LNQ46_010620	COG0523	cobalamin synthesis protein
LNQ46_010625	COG0671	phosphoesterase, PA-phosphatase related
LNQ46_010630	COG0791	NLP P60 protein
LNQ46_010635	COG2200	EAL domain
LNQ46_010640	COG4166	transmembrane transport
LNQ46_010645	COG4174	ABC transporter (Permease)
LNQ46_010650	COG4239	(ABC) transporter, permease
LNQ46_010655	COG4172	Belongs to the ABC transporter superfamily
LNQ46_010665	COG2814	Major facilitator Superfamily
LNQ46_010670	COG1187	pseudouridine synthase activity
LNQ46_010675	COG1061	Type III restriction enzyme res subunit
LNQ46_010690	COG3082	Protein of unknown function (DUF1414)
LNQ46_010695	COG3083	sulfuric ester hydrolase activity
LNQ46_010720	COG3778	Protein conserved in bacteria
LNQ46_010725	COG3299	homolog of phage Mu protein gp47
LNQ46_010770	COG4386	tail sheath protein
LNQ46_010820	COG1802	Transcriptional regulator
LNQ46_010820	COG4626	Terminase
LNQ46_010845	COG1876	peptidase activity
LNQ46_010875	COG2815	serine threonine protein kinase
LNQ46_010875	COG0515	serine threonine protein kinase
LNQ46_010890	COG1403	HNH endonuclease
LNQ46_010905	COG4725	Belongs to the MT-A70-like family
LNQ46_010910	COG1802	Transcriptional regulator
LNQ46_010910	COG4626	Terminase
LNQ46_010945	COG5532	Uncharacterized conserved protein (DUF2303)
LNQ46_010950	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LNQ46_011000	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LNQ46_011005	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNQ46_011025	COG2223	nitrite transmembrane transporter activity
LNQ46_011030	COG2198	Histidine kinase
LNQ46_011030	COG0642	Histidine kinase
LNQ46_011040	COG0784	Response regulator, receiver
LNQ46_011040	COG2205	protein histidine kinase activity
LNQ46_011050	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LNQ46_011055	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LNQ46_011065	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LNQ46_011075	COG4574	serine-type endopeptidase inhibitor activity
LNQ46_011085	COG2246	polysaccharide biosynthetic process
LNQ46_011100	COG0814	amino acid
LNQ46_011125	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LNQ46_011130	COG0596	Alpha beta hydrolase
LNQ46_011135	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LNQ46_011140	COG1169	isochorismate synthase
LNQ46_011145	COG4575	ribosome binding
LNQ46_011160	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ46_011165	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LNQ46_011175	COG0839	Belongs to the complex I subunit 6 family
LNQ46_011180	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ46_011185	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LNQ46_011190	COG1034	ATP synthesis coupled electron transport
LNQ46_011210	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ46_011215	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ46_011220	COG0583	DNA-binding transcription factor activity
LNQ46_011225	COG0436	Aminotransferase
LNQ46_011230	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LNQ46_011235	COG0471	metal ion transport
LNQ46_011235	COG0490	domain, Protein
LNQ46_011245	COG3013	Belongs to the UPF0304 family
LNQ46_011250	COG3092	negative regulation of chromosome organization
LNQ46_011260	COG0280	phosphate acetyltransferase
LNQ46_011260	COG0857	belongs to the CobB CobQ family
LNQ46_011265	COG1609	Transcriptional regulator
LNQ46_011280	COG3037	sugar-specific permease SgaT UlaA
LNQ46_011285	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
LNQ46_011290	COG0622	Phosphoesterase
LNQ46_011300	COG0625	glutathione transferase activity
LNQ46_011305	COG1090	epimerase
LNQ46_011315	COG4160	amino acid transport
LNQ46_011320	COG4215	(ABC) transporter
LNQ46_011335	COG0163	prenyltransferase activity
LNQ46_011340	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LNQ46_011345	COG1286	toxin biosynthetic process
LNQ46_011350	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
LNQ46_011355	COG0285	dihydrofolate synthase activity
LNQ46_011365	COG0586	Pfam SNARE associated Golgi protein
LNQ46_011375	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LNQ46_011400	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LNQ46_011405	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LNQ46_011435	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LNQ46_011450	COG3101	peptidyl-lysine hydroxylation
LNQ46_011455	COG0730	response to heat
LNQ46_011460	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
LNQ46_011470	COG2890	protein-(glutamine-N5) methyltransferase activity
LNQ46_011475	COG2840	Smr protein MutS2
LNQ46_011480	COG2062	phosphohistidine phosphatase, SixA
LNQ46_011485	COG1250	3-hydroxyacyl-CoA dehydrogenase
LNQ46_011485	COG1024	Enoyl-CoA hydratase
LNQ46_011490	COG0183	Belongs to the thiolase family
LNQ46_011495	COG3691	Protein conserved in bacteria
LNQ46_011510	COG3088	subunit of a heme lyase
LNQ46_011510	COG4235	cytochrome complex assembly
LNQ46_011515	COG4235	cytochrome complex assembly
LNQ46_011515	COG3088	subunit of a heme lyase
LNQ46_011520	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LNQ46_011525	COG1138	Cytochrome C-type biogenesis protein
LNQ46_011530	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LNQ46_011535	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LNQ46_011540	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LNQ46_011545	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LNQ46_011565	COG2824	Alkylphosphonate utilization operon protein PhnA
LNQ46_011570	COG2951	lytic endotransglycosylase activity
LNQ46_011585	COG3038	cytochrome b561
LNQ46_011610	COG3275	phosphorelay sensor kinase activity
LNQ46_011615	COG3279	Response regulator of the LytR AlgR family
LNQ46_011620	COG2223	nitrite transmembrane transporter activity
LNQ46_011625	COG0837	glucose binding
LNQ46_011645	COG1914	H( )-stimulated, divalent metal cation uptake system
LNQ46_011650	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LNQ46_011705	COG3530	Putative quorum-sensing-regulated virulence factor
LNQ46_011710	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LNQ46_011720	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
LNQ46_011730	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ46_011745	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LNQ46_011755	COG4208	sulfate ABC transporter
LNQ46_011760	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LNQ46_011765	COG4150	thiosulfate binding
LNQ46_011775	COG1737	Transcriptional regulator
LNQ46_011780	COG2731	YhcH YjgK YiaL family protein
LNQ46_011795	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LNQ46_011800	COG2837	iron assimilation
LNQ46_011810	COG3111	PFAM Bacterial OB fold (BOF) protein
LNQ46_011885	COG1671	Belongs to the UPF0178 family
LNQ46_011890	COG0281	malic enzyme
LNQ46_011890	COG0280	phosphate acetyltransferase
LNQ46_011895	COG0494	nUDIX hydrolase
LNQ46_011900	COG3005	denitrification pathway
LNQ46_011905	COG3043	anaerobic respiration
LNQ46_011910	COG0243	molybdopterin cofactor binding
LNQ46_011915	COG3062	negative regulation of establishment of protein localization
LNQ46_011920	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ46_011920	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ46_011925	COG2197	response regulator
LNQ46_011935	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LNQ46_011945	COG1605	Chorismate mutase
LNQ46_011950	COG1393	Belongs to the ArsC family
LNQ46_011955	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LNQ46_011960	COG1876	peptidase activity
LNQ46_011970	COG0400	carboxylic ester hydrolase activity
LNQ46_011990	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LNQ46_011995	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LNQ46_012000	COG2716	regulation of RNA biosynthetic process
LNQ46_012005	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LNQ46_012010	COG0628	permease
LNQ46_012015	COG4783	chaperone-mediated protein folding
LNQ46_012020	COG1393	Belongs to the ArsC family
LNQ46_012025	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LNQ46_012030	COG2233	PERMEase
LNQ46_012035	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LNQ46_012040	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LNQ46_012045	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LNQ46_012050	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNQ46_012060	COG0581	inorganic phosphate transmembrane transporter activity
LNQ46_012065	COG0573	inorganic phosphate transmembrane transporter activity
LNQ46_012070	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LNQ46_012085	COG2239	Acts as a magnesium transporter
LNQ46_012090	COG0443	Heat shock 70 kDa protein
LNQ46_012100	COG3121	Chaperone
LNQ46_012120	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ46_012130	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LNQ46_012135	COG0477	Major facilitator Superfamily
LNQ46_012140	COG2205	protein histidine kinase activity
LNQ46_012145	COG0745	RESPONSE REGULATOR receiver
LNQ46_012150	COG3422	double-strand break repair
LNQ46_012155	COG0826	peptidase U32
LNQ46_012160	COG1597	lipid kinase activity
LNQ46_012175	COG0351	phosphomethylpyrimidine kinase
LNQ46_012185	COG0519	Catalyzes the synthesis of GMP from XMP
LNQ46_012185	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LNQ46_012190	COG0516	GMP reductase activity
LNQ46_012190	COG0517	IMP dehydrogenase activity
LNQ46_012195	COG1570	exodeoxyribonuclease VII activity
LNQ46_012200	COG1645	bacterial-type flagellum-dependent swarming motility
LNQ46_012210	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LNQ46_012215	COG2976	Protein conserved in bacteria
LNQ46_012220	COG0124	histidyl-tRNA synthetase
LNQ46_012240	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LNQ46_012255	COG4953	penicillin-binding protein 1C
LNQ46_012260	COG2373	Large extracellular alpha-helical protein
LNQ46_012275	COG2975	iron-sulfur cluster assembly
LNQ46_012280	COG0633	Ferredoxin
LNQ46_012285	COG0443	Heat shock 70 kDa protein
LNQ46_012300	COG0822	iron-sulfur transferase activity
LNQ46_012310	COG1959	2 iron, 2 sulfur cluster binding
LNQ46_012315	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
LNQ46_012325	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
LNQ46_012330	COG3683	transport system, periplasmic component
LNQ46_012335	COG3711	transcriptional antiterminator
LNQ46_012340	COG2814	Major facilitator Superfamily
LNQ46_012350	COG1017	nitric oxide dioxygenase activity
LNQ46_012350	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LNQ46_012355	COG2188	Transcriptional regulator
LNQ46_012365	COG3457	Alanine racemase
LNQ46_012370	COG1735	metal-dependent hydrolase with the TIM-barrel fold
LNQ46_012385	COG0347	Belongs to the P(II) protein family
LNQ46_012390	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNQ46_012390	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LNQ46_012395	COG2204	response regulator
LNQ46_012400	COG3170	Tfp pilus assembly protein FimV
LNQ46_012405	COG2205	protein histidine kinase activity
LNQ46_012420	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LNQ46_012430	COG0560	Phosphoserine phosphatase
LNQ46_012435	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ46_012435	COG1263	PTS System
LNQ46_012445	COG1737	Transcriptional regulator
LNQ46_012450	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ46_012460	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LNQ46_012470	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LNQ46_012485	COG0481	GTPase activity
LNQ46_012490	COG3086	response to oxidative stress
LNQ46_012500	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
LNQ46_012510	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LNQ46_012520	COG0513	Belongs to the DEAD box helicase family
LNQ46_012535	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
LNQ46_012545	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LNQ46_012550	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LNQ46_012555	COG0497	DNA recombination
LNQ46_012560	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LNQ46_012570	COG2867	negative regulation of translational initiation
LNQ46_012575	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LNQ46_012595	COG1069	ribulokinase activity
LNQ46_012605	COG1172	Belongs to the binding-protein-dependent transport system permease family
LNQ46_012610	COG1129	ABC transporter
LNQ46_012630	COG1620	l-lactate permease
LNQ46_012635	COG1304	FMN binding
LNQ46_012640	COG0579	oxidoreductase
LNQ46_012645	COG1278	Cold shock
LNQ46_012675	COG1780	Probably involved in ribonucleotide reductase function
LNQ46_012680	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LNQ46_012690	COG4175	Glycine betaine
LNQ46_012695	COG4176	ABC-type proline glycine betaine transport system permease component
LNQ46_012700	COG2113	Glycine betaine
LNQ46_012705	COG2814	Major facilitator Superfamily
LNQ46_012710	COG1846	Transcriptional regulator
LNQ46_012720	COG1566	PFAM secretion protein HlyD family protein
LNQ46_012725	COG2814	Major facilitator Superfamily
LNQ46_012730	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LNQ46_012735	COG3118	belongs to the thioredoxin family
LNQ46_012740	COG3148	PFAM DTW domain containing protein
LNQ46_012745	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNQ46_012745	COG1042	CoA-binding domain protein
LNQ46_012745	COG0045	succinate-CoA ligase (ADP-forming) activity
LNQ46_012750	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LNQ46_012755	COG5544	Lipoprotein
LNQ46_012785	COG0542	response to heat
LNQ46_012790	COG1496	oxidoreductase activity
LNQ46_012795	COG0564	pseudouridine synthase activity
LNQ46_012800	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LNQ46_012805	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LNQ46_012815	COG0077	Prephenate dehydratase
LNQ46_012815	COG1605	Chorismate mutase
LNQ46_012820	COG0287	Prephenate dehydrogenase
LNQ46_012820	COG1605	Chorismate mutase
LNQ46_012825	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LNQ46_012830	COG3279	Response regulator of the LytR AlgR family
LNQ46_012835	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LNQ46_012840	COG3137	Salt-induced outer membrane protein
LNQ46_012845	COG0335	large ribosomal subunit rRNA binding
LNQ46_012850	COG0336	Belongs to the RNA methyltransferase TrmD family
LNQ46_012855	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LNQ46_012865	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LNQ46_012870	COG4137	Cytochrome C assembly protein
LNQ46_012875	COG4536	flavin adenine dinucleotide binding
LNQ46_012880	COG1854	S-ribosylhomocysteine lyase activity
LNQ46_012885	COG2918	glutathione biosynthetic process
LNQ46_012890	COG1238	metal cluster binding
LNQ46_012895	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LNQ46_012925	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LNQ46_012930	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LNQ46_012935	COG2137	regulation of response to DNA damage stimulus
LNQ46_012940	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LNQ46_012955	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
LNQ46_012955	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
LNQ46_012980	COG3031	protein transport across the cell outer membrane
LNQ46_012990	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LNQ46_013035	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LNQ46_013045	COG3397	chitin binding
LNQ46_013065	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LNQ46_013195	COG0741	lytic transglycosylase activity
LNQ46_013215	COG2205	protein histidine kinase activity
LNQ46_013215	COG0784	Response regulator, receiver
LNQ46_013290	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LNQ46_013295	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LNQ46_013300	COG4942	peptidase
LNQ46_013300	COG1388	LysM domain
LNQ46_013310	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LNQ46_013315	COG0585	pseudouridine synthase activity
LNQ46_013320	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LNQ46_013330	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LNQ46_013340	COG0529	Catalyzes the synthesis of activated sulfate
LNQ46_013345	COG2895	sulfate adenylyltransferase (ATP) activity
LNQ46_013350	COG0175	sulfate reduction
LNQ46_013355	COG1648	precorrin-2 dehydrogenase activity
LNQ46_013355	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LNQ46_013360	COG2234	aminopeptidase activity
LNQ46_013375	COG0175	sulfate reduction
LNQ46_013385	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LNQ46_013390	COG0720	synthase
LNQ46_013395	COG0602	queuosine metabolic process
LNQ46_013405	COG0504	CTP synthase activity
LNQ46_013410	COG3956	TIGRFAM MazG family protein
LNQ46_013415	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LNQ46_013420	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LNQ46_013430	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LNQ46_013435	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LNQ46_013440	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LNQ46_013450	COG2860	membrane
LNQ46_013455	COG0316	Belongs to the HesB IscA family
LNQ46_013465	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LNQ46_013470	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LNQ46_013475	COG1643	Atp-dependent helicase
LNQ46_013480	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LNQ46_013485	COG1489	DNA binding
LNQ46_013500	COG0617	tRNA 3'-terminal CCA addition
LNQ46_013505	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LNQ46_013510	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LNQ46_013515	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LNQ46_013520	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
LNQ46_013525	COG0726	polysaccharide deacetylase
LNQ46_013530	COG0842	Transport permease protein
LNQ46_013535	COG1131	(ABC) transporter
LNQ46_013540	COG0288	reversible hydration of carbon dioxide
LNQ46_013550	COG2132	Multicopper oxidase
LNQ46_013560	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LNQ46_013575	COG3112	Uncharacterised protein family (UPF0231)
LNQ46_013580	COG1049	propionate catabolic process, 2-methylcitrate cycle
LNQ46_013590	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNQ46_013595	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNQ46_013600	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
LNQ46_013605	COG2186	Transcriptional regulator
LNQ46_013610	COG1113	amino acid transport
LNQ46_013615	COG3725	Membrane protein required for beta-lactamase induction
LNQ46_013630	COG4969	Belongs to the N-Me-Phe pilin family
LNQ46_013635	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LNQ46_013640	COG1459	type II secretion system
LNQ46_013645	COG0516	GMP reductase activity
LNQ46_013665	COG0494	nUDIX hydrolase
LNQ46_013690	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LNQ46_013695	COG0849	cell division
LNQ46_013700	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LNQ46_013710	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LNQ46_013715	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LNQ46_013720	COG0772	Belongs to the SEDS family
LNQ46_013735	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LNQ46_013740	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LNQ46_013745	COG0768	penicillin binding
LNQ46_013750	COG3116	cell division
LNQ46_013755	COG0275	rRNA processing
LNQ46_013775	COG0675	Transposase, IS605 OrfB family
LNQ46_013790	COG0028	Belongs to the TPP enzyme family
LNQ46_013795	COG1022	Amp-dependent synthetase and ligase
LNQ46_013810	COG0473	3-isopropylmalate dehydrogenase activity
LNQ46_013815	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LNQ46_013825	COG2814	Major facilitator Superfamily
LNQ46_013840	COG4143	(ABC) transporter
LNQ46_013845	COG1178	ABC-type Fe3 transport system permease component
LNQ46_013855	COG0586	Pfam SNARE associated Golgi protein
LNQ46_013860	COG0417	DNA replication proofreading
LNQ46_013865	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LNQ46_013870	COG0564	pseudouridine synthase activity
LNQ46_013880	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LNQ46_013890	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LNQ46_013895	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LNQ46_013900	COG2967	ApaG domain
LNQ46_013925	COG2966	Psort location CytoplasmicMembrane, score
LNQ46_013935	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LNQ46_013950	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LNQ46_013955	COG1047	Peptidyl-prolyl cis-trans
LNQ46_013960	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LNQ46_013970	COG0196	riboflavin kinase activity
LNQ46_013980	COG0583	DNA-binding transcription factor activity
LNQ46_013985	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LNQ46_013995	COG0443	Heat shock 70 kDa protein
LNQ46_014000	COG1584	GPR1 FUN34 yaaH family protein
LNQ46_014010	COG0477	Major facilitator Superfamily
LNQ46_014015	COG0521	Mo-molybdopterin cofactor biosynthetic process
LNQ46_014020	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LNQ46_014055	COG0745	RESPONSE REGULATOR receiver
LNQ46_014060	COG3045	CreA protein
LNQ46_014065	COG3708	Transcriptional regulator
LNQ46_014065	COG2207	Transcriptional regulator
LNQ46_014070	COG0406	alpha-ribazole phosphatase activity
LNQ46_014075	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
LNQ46_014080	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
LNQ46_014085	COG0741	lytic transglycosylase activity
LNQ46_014105	COG0488	(ABC) transporter
LNQ46_014120	COG0560	Phosphoserine phosphatase
LNQ46_014125	COG3726	membrane protein affecting hemolysin expression
LNQ46_014135	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LNQ46_014150	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LNQ46_014155	COG0084	hydrolase, TatD family'
LNQ46_014160	COG4667	esterase of the alpha-beta hydrolase superfamily
LNQ46_014170	COG2823	Periplasmic or secreted lipoprotein
LNQ46_014185	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
LNQ46_014225	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ46_014225	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
LNQ46_014225	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNQ46_014230	COG1461	Dihydroxyacetone kinase
LNQ46_014235	COG2376	Dihydroxyacetone kinase
LNQ46_014245	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LNQ46_014250	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ46_014265	COG0859	PFAM glycosyl transferase family 9
LNQ46_014290	COG3119	arylsulfatase activity
LNQ46_014295	COG0641	radical SAM
LNQ46_014305	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ46_014315	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LNQ46_014325	COG3716	PTS system mannose fructose sorbose family IID component
LNQ46_014330	COG3715	PTS system
LNQ46_014335	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ46_014340	COG2222	sugar isomerase
LNQ46_014350	COG1349	DNA-binding transcription factor activity
LNQ46_014355	COG3119	arylsulfatase activity
LNQ46_014375	COG5492	domain, Protein
LNQ46_014465	COG3077	Addiction module antitoxin, RelB DinJ family
LNQ46_014495	COG0732	type I restriction modification DNA specificity domain
LNQ46_014505	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
LNQ46_014520	COG0795	lipopolysaccharide-transporting ATPase activity
LNQ46_014525	COG0795	lipopolysaccharide-transporting ATPase activity
LNQ46_014530	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LNQ46_014535	COG2927	DNA polymerase III (CHI subunit)
LNQ46_014550	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
LNQ46_014570	COG3624	Phosphonate C-P lyase system protein PhnG
LNQ46_014575	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
LNQ46_014580	COG3626	phosphonate metabolism
LNQ46_014585	COG3627	carbon phosphorus lyase activity
LNQ46_014590	COG4107	phosphonate C-P lyase system protein PhnK
LNQ46_014595	COG4778	phosphonate C-P lyase system protein PhnL
LNQ46_014600	COG3454	Phosphonate metabolism
LNQ46_014605	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
LNQ46_014610	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LNQ46_014615	COG0702	epimerase
LNQ46_014620	COG3787	Belongs to the UPF0306 family
LNQ46_014630	COG1982	Orn Lys Arg decarboxylase major
LNQ46_014635	COG0531	amino acid
LNQ46_014640	COG2827	Endonuclease containing a URI domain
LNQ46_014645	COG3153	acetyltransferase
LNQ46_014650	COG3154	lipid carrier protein
LNQ46_014655	COG0826	peptidase U32
LNQ46_014660	COG0826	peptidase U32
LNQ46_014670	COG0814	amino acid
LNQ46_014675	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LNQ46_014680	COG0513	Belongs to the DEAD box helicase family
LNQ46_014690	COG1185	polyribonucleotide nucleotidyltransferase activity
LNQ46_014705	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LNQ46_014715	COG0195	Participates in both transcription termination and antitermination
LNQ46_014735	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LNQ46_014740	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LNQ46_014745	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LNQ46_014755	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LNQ46_014760	COG1534	Rna-binding protein
LNQ46_014770	COG2027	D-alanyl-D-alanine carboxypeptidase
LNQ46_014775	COG0745	RESPONSE REGULATOR receiver
LNQ46_014780	COG0642	Histidine kinase
LNQ46_014785	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LNQ46_014790	COG0697	spore germination
LNQ46_014805	COG0142	geranyltranstransferase activity
LNQ46_014820	COG3423	Transcriptional regulator
LNQ46_014835	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LNQ46_014845	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LNQ46_014850	COG2105	PFAM AIG2 family protein
LNQ46_014855	COG2911	Protein conserved in bacteria
LNQ46_014860	COG0729	surface antigen
LNQ46_014865	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LNQ46_014870	COG1253	flavin adenine dinucleotide binding
LNQ46_014880	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
LNQ46_014885	COG1218	3'(2'),5'-bisphosphate nucleotidase
LNQ46_014890	COG0737	Belongs to the 5'-nucleotidase family
LNQ46_014900	COG0545	Peptidyl-prolyl cis-trans isomerase
LNQ46_014905	COG3061	Opacity-associated protein A
LNQ46_014910	COG0359	binds to the 23S rRNA
LNQ46_014915	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LNQ46_014920	COG2965	DNA replication, synthesis of RNA primer
LNQ46_014925	COG0360	Binds together with S18 to 16S ribosomal RNA
LNQ46_014935	COG1073	alpha beta
LNQ46_014955	COG3188	usher protein
LNQ46_014960	COG3121	Chaperone
LNQ46_014980	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LNQ46_014985	COG0557	exoribonuclease II activity
LNQ46_014990	COG1959	2 iron, 2 sulfur cluster binding
LNQ46_014995	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LNQ46_015000	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
LNQ46_015005	COG0330	HflC and HflK could
LNQ46_015010	COG0330	HflC and HflK could
LNQ46_015015	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LNQ46_015025	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LNQ46_015035	COG0860	N-Acetylmuramoyl-L-alanine amidase
LNQ46_015040	COG0802	atpase or kinase
LNQ46_015045	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LNQ46_015045	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LNQ46_015050	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LNQ46_015070	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LNQ46_015075	COG1162	GTPase activity
LNQ46_015080	COG0688	phosphatidylethanolamine metabolic process
LNQ46_015085	COG3264	Mechanosensitive ion channel
LNQ46_015085	COG1511	domain protein
LNQ46_015090	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LNQ46_015095	COG1053	succinate dehydrogenase
LNQ46_015100	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LNQ46_015105	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LNQ46_015110	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LNQ46_015130	COG3188	usher protein
LNQ46_015150	COG3397	chitin binding
LNQ46_015160	COG1509	lysine 2,3-aminomutase activity
LNQ46_015170	COG3421	Type III restriction
LNQ46_015175	COG2189	Belongs to the N(4) N(6)-methyltransferase family
LNQ46_015215	COG0582	viral genome integration into host DNA
LNQ46_015240	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LNQ46_015250	COG4232	protein-disulfide reductase activity
LNQ46_015255	COG1309	transcriptional regulator
LNQ46_015275	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LNQ46_015295	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LNQ46_015300	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LNQ46_015300	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNQ46_015320	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ46_015325	COG2755	lipolytic protein G-D-S-L family
LNQ46_015325	COG1083	cytidylyl-transferase
LNQ46_015345	COG2089	acid synthase
LNQ46_015350	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LNQ46_015355	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LNQ46_015360	COG1086	Polysaccharide biosynthesis protein
LNQ46_015365	COG0425	Belongs to the sulfur carrier protein TusA family
LNQ46_015370	COG2391	methyltransferase activity
LNQ46_015375	COG1301	dicarboxylic acid transport
LNQ46_015380	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LNQ46_015385	COG3162	membrane
LNQ46_015390	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LNQ46_015420	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
LNQ46_015425	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LNQ46_015430	COG1739	Uncharacterized protein family UPF0029
LNQ46_015440	COG1250	3-hydroxyacyl-CoA dehydrogenase
LNQ46_015440	COG1024	Enoyl-CoA hydratase
LNQ46_015450	COG0543	2 iron, 2 sulfur cluster binding
LNQ46_015465	COG0250	Participates in transcription elongation, termination and antitermination
LNQ46_015480	COG0805	protein transport
LNQ46_015485	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LNQ46_015490	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LNQ46_015495	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LNQ46_015500	COG3165	ubiquinone biosynthetic process from chorismate
LNQ46_015505	COG2226	methyltransferase
LNQ46_015510	COG1322	Protein conserved in bacteria
LNQ46_015515	COG0586	Pfam SNARE associated Golgi protein
LNQ46_015520	COG1966	Carbon starvation protein
LNQ46_015535	COG0412	Dienelactone hydrolase
LNQ46_015540	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LNQ46_015545	COG0583	DNA-binding transcription factor activity
LNQ46_015550	COG0697	spore germination
LNQ46_015560	COG0584	glycerophosphoryl diester phosphodiesterase
LNQ46_015570	COG0395	ABC-type sugar transport system, permease component
LNQ46_015575	COG1175	transmembrane transport
LNQ46_015580	COG1653	transport
LNQ46_015615	COG0410	ABC transporter
LNQ46_015625	COG4177	L-phenylalanine transmembrane transporter activity
LNQ46_015645	COG1929	Belongs to the glycerate kinase type-1 family
LNQ46_015650	COG2610	gluconate transmembrane transporter activity
LNQ46_015655	COG3835	regulator
LNQ46_015665	COG2177	Part of the ABC transporter FtsEX involved in
LNQ46_015670	COG2884	Cell division ATP-binding protein ftsE
LNQ46_015675	COG0552	protein localization to endoplasmic reticulum
LNQ46_015675	COG0552	protein localization to endoplasmic reticulum
LNQ46_015680	COG0742	ribosomal rna small subunit methyltransferase
LNQ46_015685	COG3776	membrane
LNQ46_015700	COG3714	YhhN family
LNQ46_015715	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LNQ46_015725	COG0247	lactate metabolic process
LNQ46_015735	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LNQ46_015745	COG2271	Major facilitator Superfamily
LNQ46_015750	COG0584	glycerophosphoryl diester phosphodiesterase
LNQ46_015755	COG0561	phosphatase activity
LNQ46_015760	COG2267	carboxylic ester hydrolase activity
LNQ46_015765	COG1280	lysine exporter protein (LysE YggA)
LNQ46_015770	COG0514	ATP-dependent DNA helicase (RecQ)
LNQ46_015775	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
LNQ46_015780	COG2050	protein possibly involved in aromatic compounds catabolism
LNQ46_015800	COG5564	TIM-barrel signal transduction protein
LNQ46_015805	COG5441	Belongs to the UPF0261 family
LNQ46_015815	COG0210	DNA helicase
LNQ46_015820	COG1011	Hydrolase
LNQ46_015825	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LNQ46_015830	COG3159	Protein conserved in bacteria
LNQ46_015835	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LNQ46_015840	COG5567	small periplasmic lipoprotein
LNQ46_015850	COG3072	Adenylate cyclase
LNQ46_015855	COG0181	hydroxymethylbilane synthase activity
LNQ46_015860	COG1587	Uroporphyrinogen-III synthase
LNQ46_015865	COG2959	enzyme of heme biosynthesis
LNQ46_015870	COG3071	HemY protein
LNQ46_015920	COG2244	polysaccharide biosynthetic process
LNQ46_015925	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LNQ46_015930	COG0456	acetyltransferase
LNQ46_015935	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LNQ46_015940	COG1088	dTDP-glucose 4,6-dehydratase activity
LNQ46_015945	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LNQ46_015950	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LNQ46_015955	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
LNQ46_015960	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LNQ46_015965	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LNQ46_015970	COG3118	belongs to the thioredoxin family
LNQ46_015980	COG0248	Ppx GppA phosphatase
LNQ46_015990	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LNQ46_016005	COG3397	chitin binding
LNQ46_016015	COG0129	dihydroxy-acid dehydratase activity
LNQ46_016025	COG3978	acetolactate synthase activity
LNQ46_016045	COG3085	chromosome segregation
LNQ46_016050	COG0583	DNA-binding transcription factor activity
LNQ46_016130	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNQ46_016140	COG0678	peroxiredoxin activity
LNQ46_016140	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LNQ46_016145	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNQ46_016180	COG1629	transport
LNQ46_016185	COG0165	Argininosuccinate lyase
LNQ46_016190	COG0137	argininosuccinate synthase activity
LNQ46_016195	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LNQ46_016240	COG0460	homoserine dehydrogenase
LNQ46_016240	COG0527	aspartate kinase activity
LNQ46_016245	COG0626	cystathionine gamma-synthase activity
LNQ46_016250	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
LNQ46_016260	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LNQ46_016265	COG1609	Transcriptional regulator
LNQ46_016270	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LNQ46_016275	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LNQ46_016280	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LNQ46_016285	COG1575	Belongs to the MenA family. Type 1 subfamily
LNQ46_016290	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LNQ46_016295	COG3074	FtsZ-dependent cytokinesis
LNQ46_016300	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LNQ46_016305	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LNQ46_016310	COG1494	fructose-1,6-bisphosphatase
LNQ46_016315	COG2814	Major facilitator Superfamily
LNQ46_016325	COG3152	Membrane
LNQ46_016340	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LNQ46_016350	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LNQ46_016355	COG3678	ATP-independent chaperone mediated protein folding
LNQ46_016360	COG0745	RESPONSE REGULATOR receiver
LNQ46_016365	COG2205	protein histidine kinase activity
LNQ46_016370	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LNQ46_016375	COG1045	serine acetyltransferase
LNQ46_016380	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LNQ46_016385	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LNQ46_016390	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LNQ46_016395	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LNQ46_016400	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LNQ46_016405	COG4942	peptidase
LNQ46_016410	COG2861	carbohydrate metabolic process
LNQ46_016425	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LNQ46_016430	COG0859	PFAM glycosyl transferase family 9
LNQ46_016435	COG0859	PFAM glycosyl transferase family 9
LNQ46_016440	COG1519	Transferase
LNQ46_016460	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LNQ46_016465	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LNQ46_016470	COG2003	Belongs to the UPF0758 family
LNQ46_016475	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LNQ46_016480	COG0756	dUTP diphosphatase activity
LNQ46_016485	COG1309	transcriptional regulator
LNQ46_016490	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LNQ46_016495	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LNQ46_016500	COG1561	YicC-like family, N-terminal region
LNQ46_016545	COG5001	Diguanylate cyclase
LNQ46_016550	COG1024	Enoyl-CoA hydratase
LNQ46_016555	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LNQ46_016565	COG2860	membrane
LNQ46_016570	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LNQ46_016580	COG1758	RNA polymerase activity
LNQ46_016585	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LNQ46_016590	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LNQ46_016595	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LNQ46_016600	COG0786	glutamate:sodium symporter activity
LNQ46_016605	COG2233	PERMEase
LNQ46_016610	COG2982	Protein involved in outer membrane biogenesis
LNQ46_016615	COG0456	acetyltransferase
LNQ46_016630	COG1011	Hydrolase
LNQ46_016645	COG3852	Histidine kinase
LNQ46_016655	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LNQ46_016665	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LNQ46_016670	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNQ46_016670	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNQ46_016675	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LNQ46_016680	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LNQ46_016685	COG3084	Protein conserved in bacteria
LNQ46_016695	COG1763	Mo-molybdopterin cofactor biosynthetic process
LNQ46_016720	COG2186	Transcriptional regulator
LNQ46_016725	COG1609	Transcriptional regulator
LNQ46_016730	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LNQ46_016740	COG1172	Belongs to the binding-protein-dependent transport system permease family
LNQ46_016745	COG1129	ABC transporter
LNQ46_016750	COG1869	D-ribose catabolic process
LNQ46_016755	COG3158	transport of potassium into the cell
LNQ46_016760	COG0714	Associated with various cellular activities
LNQ46_016765	COG2425	protein containing a von Willebrand factor type A (vWA) domain
LNQ46_016775	COG2502	aspartate--ammonia ligase
LNQ46_016780	COG1522	sequence-specific DNA binding
LNQ46_016785	COG0716	FMN binding
LNQ46_016790	COG0445	tRNA wobble uridine modification
LNQ46_016795	COG0357	Ribosomal RNA small subunit methyltransferase G
LNQ46_016800	COG3312	ion transport
LNQ46_016805	COG0356	it plays a direct role in the translocation of protons across the membrane
LNQ46_016815	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LNQ46_016825	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LNQ46_016830	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LNQ46_016840	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LNQ46_016855	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LNQ46_016860	COG0573	inorganic phosphate transmembrane transporter activity
LNQ46_016865	COG0581	inorganic phosphate transmembrane transporter activity
LNQ46_016875	COG0704	Plays a role in the regulation of phosphate uptake
LNQ46_016880	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ46_016885	COG0765	amino acid transport
LNQ46_016890	COG0765	amino acid transport
LNQ46_016895	COG2252	PERMEase
LNQ46_016900	COG0840	transmembrane signaling receptor activity
LNQ46_016910	COG3121	Chaperone
LNQ46_016925	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LNQ46_016930	COG0706	membrane insertase activity
LNQ46_016940	COG0594	ribonuclease P activity
LNQ46_016945	COG0230	Belongs to the bacterial ribosomal protein bL34 family