locus-tag	class	description
LOR96_000010	COG0592	DNA-directed DNA polymerase activity
LOR96_000020	COG0187	DNA topoisomerase II activity
LOR96_000025	COG0561	phosphatase activity
LOR96_000030	COG0823	Involved in the tonB-independent uptake of proteins
LOR96_000035	COG5645	(Lipo)protein
LOR96_000050	COG0569	domain protein
LOR96_000050	COG2985	domain, Protein
LOR96_000055	COG3977	Valine--pyruvate aminotransferase
LOR96_000060	COG2885	chlorophyll binding
LOR96_000080	COG2818	Glycosylase
LOR96_000130	COG2213	PTS system mannitol-specific
LOR96_000130	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_000140	COG3722	fumarate hydratase activity
LOR96_000150	COG2258	MOSC domain
LOR96_000155	COG0840	transmembrane signaling receptor activity
LOR96_000160	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LOR96_000175	COG0437	4 iron, 4 sulfur cluster binding
LOR96_000180	COG2864	formate dehydrogenase
LOR96_000190	COG1921	L-seryl-tRNASec selenium transferase activity
LOR96_000195	COG3276	selenocysteine insertion sequence binding
LOR96_000200	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
LOR96_000210	COG3274	enterobacterial common antigen metabolic process
LOR96_000220	COG0582	viral genome integration into host DNA
LOR96_000255	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LOR96_000260	COG2986	histidine ammonia-lyase
LOR96_000280	COG2194	sulfuric ester hydrolase activity
LOR96_000285	COG2197	response regulator
LOR96_000290	COG3851	Histidine kinase
LOR96_000295	COG2271	Major facilitator Superfamily
LOR96_000305	COG0747	negative chemotaxis
LOR96_000310	COG0601	transmembrane transport
LOR96_000315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LOR96_000320	COG0444	Belongs to the ABC transporter superfamily
LOR96_000325	COG4608	Belongs to the ABC transporter superfamily
LOR96_000330	COG2194	sulfuric ester hydrolase activity
LOR96_000355	COG1215	transferase activity, transferring glycosyl groups
LOR96_000360	COG1215	transferase activity, transferring glycosyl groups
LOR96_000365	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LOR96_000370	COG3118	belongs to the thioredoxin family
LOR96_000370	COG0457	Tetratricopeptide repeat
LOR96_000375	COG2199	diguanylate cyclase activity
LOR96_000375	COG2200	EAL domain
LOR96_000380	COG1301	dicarboxylic acid transport
LOR96_000385	COG0612	Peptidase, M16
LOR96_000390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LOR96_000395	COG1942	4-Oxalocrotonate Tautomerase
LOR96_000400	COG2200	EAL domain
LOR96_000405	COG2134	cdp-diacylglycerol pyrophosphatase
LOR96_000410	COG1295	ribonuclease BN
LOR96_000420	COG1301	dicarboxylic acid transport
LOR96_000425	COG0626	cystathionine gamma-synthase activity
LOR96_000435	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LOR96_000440	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LOR96_000445	COG0339	signal peptide processing
LOR96_000450	COG0742	ribosomal rna small subunit methyltransferase
LOR96_000460	COG0589	response to stress
LOR96_000470	COG0306	phosphate transporter
LOR96_000475	COG2081	HI0933 family
LOR96_000485	COG1247	-acetyltransferase
LOR96_000495	COG1741	Belongs to the pirin family
LOR96_000500	COG1609	Transcriptional regulator
LOR96_000505	COG2610	gluconate transmembrane transporter activity
LOR96_000510	COG3265	gluconokinase activity
LOR96_000515	COG2095	MarC family integral membrane protein
LOR96_000520	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LOR96_000525	COG3275	phosphorelay sensor kinase activity
LOR96_000530	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LOR96_000535	COG1523	belongs to the glycosyl hydrolase 13 family
LOR96_000540	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LOR96_000545	COG0297	glycogen (starch) synthase activity
LOR96_000550	COG0058	SHG alpha-glucan phosphorylase activity
LOR96_000555	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LOR96_000560	COG1349	DNA-binding transcription factor activity
LOR96_000565	COG0705	Rhomboid family
LOR96_000575	COG2909	trisaccharide binding
LOR96_000580	COG0058	SHG alpha-glucan phosphorylase activity
LOR96_000585	COG1640	4-alpha-glucanotransferase
LOR96_000595	COG1040	competence protein
LOR96_000600	COG0596	Alpha beta hydrolase
LOR96_000620	COG1918	ferrous iron import across plasma membrane
LOR96_000625	COG2183	response to ionizing radiation
LOR96_000650	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LOR96_000665	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LOR96_000675	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LOR96_000680	COG1011	Hydrolase
LOR96_000690	COG0494	nUDIX hydrolase
LOR96_000695	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LOR96_000720	COG4796	Type ii and iii secretion system protein
LOR96_000725	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LOR96_000745	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LOR96_000755	COG0180	Tryptophanyl-tRNA synthetase
LOR96_000775	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LOR96_000780	COG0402	S-adenosylhomocysteine deaminase activity
LOR96_000785	COG0738	Major facilitator superfamily
LOR96_000800	COG1609	Transcriptional regulator
LOR96_000805	COG1486	melibiose metabolic process
LOR96_000810	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LOR96_000825	COG1289	transmembrane transporter activity
LOR96_000830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LOR96_000835	COG1765	OsmC-like protein
LOR96_000860	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LOR96_000865	COG3954	Phosphoribulokinase
LOR96_000875	COG0429	hydrolase of the alpha beta-hydrolase fold
LOR96_000885	COG0859	PFAM glycosyl transferase family 9
LOR96_000890	COG1216	Glycosyl transferase, family 2
LOR96_000895	COG0488	(ABC) transporter
LOR96_000900	COG2249	NAD(P)H dehydrogenase (quinone) activity
LOR96_000910	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LOR96_000915	COG1047	Peptidyl-prolyl cis-trans
LOR96_000925	COG0545	Peptidyl-prolyl cis-trans isomerase
LOR96_000930	COG2964	Protein conserved in bacteria
LOR96_000940	COG2923	Belongs to the DsrF TusC family
LOR96_000945	COG2168	tRNA wobble position uridine thiolation
LOR96_000950	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LOR96_000955	COG0049	tRNA binding
LOR96_000965	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LOR96_000980	COG0051	transcription antitermination factor activity, RNA binding
LOR96_000985	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LOR96_000995	COG0089	rRNA binding
LOR96_001000	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LOR96_001005	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LOR96_001010	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LOR96_001020	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LOR96_001025	COG0255	Belongs to the universal ribosomal protein uL29 family
LOR96_001030	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LOR96_001035	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LOR96_001045	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LOR96_001070	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LOR96_001075	COG1841	ribosomal large subunit assembly
LOR96_001080	COG0200	Binds to the 23S rRNA
LOR96_001085	COG0201	protein transport
LOR96_001090	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LOR96_001095	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LOR96_001105	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LOR96_001115	COG0203	ribosomal protein L17
LOR96_001120	COG0789	Transcriptional regulator
LOR96_001125	COG3036	rescue of stalled ribosome
LOR96_001130	COG1970	mechanosensitive ion channel activity
LOR96_001140	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LOR96_001140	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LOR96_001145	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LOR96_001150	COG0242	peptide deformylase activity
LOR96_001155	COG0758	DNA mediated transformation
LOR96_001160	COG2922	Belongs to the Smg family
LOR96_001165	COG0551	DNA topoisomerase type I activity
LOR96_001170	COG0009	L-threonylcarbamoyladenylate synthase
LOR96_001180	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LOR96_001210	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LOR96_001215	COG3162	membrane
LOR96_001220	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LOR96_001225	COG1301	dicarboxylic acid transport
LOR96_001235	COG2391	methyltransferase activity
LOR96_001240	COG0425	Belongs to the sulfur carrier protein TusA family
LOR96_001245	COG1086	Polysaccharide biosynthesis protein
LOR96_001250	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LOR96_001255	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LOR96_001260	COG2089	acid synthase
LOR96_001280	COG1083	cytidylyl-transferase
LOR96_001280	COG2755	lipolytic protein G-D-S-L family
LOR96_001285	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_001305	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LOR96_001305	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LOR96_001310	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LOR96_001330	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LOR96_001350	COG1309	transcriptional regulator
LOR96_001355	COG4232	protein-disulfide reductase activity
LOR96_001365	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LOR96_001395	COG1509	lysine 2,3-aminomutase activity
LOR96_001405	COG3397	chitin binding
LOR96_001425	COG3188	usher protein
LOR96_001445	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LOR96_001450	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LOR96_001455	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LOR96_001460	COG1053	succinate dehydrogenase
LOR96_001465	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LOR96_001470	COG3264	Mechanosensitive ion channel
LOR96_001470	COG1511	domain protein
LOR96_001475	COG0688	phosphatidylethanolamine metabolic process
LOR96_001480	COG1162	GTPase activity
LOR96_001485	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LOR96_001505	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LOR96_001510	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LOR96_001510	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LOR96_001515	COG0802	atpase or kinase
LOR96_001520	COG0860	N-Acetylmuramoyl-L-alanine amidase
LOR96_001530	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LOR96_001540	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LOR96_001545	COG0330	HflC and HflK could
LOR96_001550	COG0330	HflC and HflK could
LOR96_001555	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
LOR96_001560	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LOR96_001565	COG1959	2 iron, 2 sulfur cluster binding
LOR96_001570	COG0557	exoribonuclease II activity
LOR96_001575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LOR96_001595	COG3121	Chaperone
LOR96_001600	COG3188	usher protein
LOR96_001620	COG1073	alpha beta
LOR96_001630	COG0360	Binds together with S18 to 16S ribosomal RNA
LOR96_001635	COG2965	DNA replication, synthesis of RNA primer
LOR96_001640	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LOR96_001645	COG0359	binds to the 23S rRNA
LOR96_001650	COG3061	Opacity-associated protein A
LOR96_001655	COG0545	Peptidyl-prolyl cis-trans isomerase
LOR96_001665	COG0737	Belongs to the 5'-nucleotidase family
LOR96_001670	COG1218	3'(2'),5'-bisphosphate nucleotidase
LOR96_001675	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
LOR96_001685	COG1253	flavin adenine dinucleotide binding
LOR96_001690	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LOR96_001695	COG0729	surface antigen
LOR96_001700	COG2911	Protein conserved in bacteria
LOR96_001705	COG2105	PFAM AIG2 family protein
LOR96_001710	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LOR96_001720	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LOR96_001735	COG3423	Transcriptional regulator
LOR96_001750	COG0142	geranyltranstransferase activity
LOR96_001765	COG0697	spore germination
LOR96_001770	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LOR96_001775	COG0642	Histidine kinase
LOR96_001780	COG0745	RESPONSE REGULATOR receiver
LOR96_001785	COG2027	D-alanyl-D-alanine carboxypeptidase
LOR96_001795	COG1534	Rna-binding protein
LOR96_001800	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LOR96_001810	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LOR96_001815	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LOR96_001820	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LOR96_001840	COG0195	Participates in both transcription termination and antitermination
LOR96_001850	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LOR96_001865	COG1185	polyribonucleotide nucleotidyltransferase activity
LOR96_001875	COG0513	Belongs to the DEAD box helicase family
LOR96_001880	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LOR96_001895	COG0826	peptidase U32
LOR96_001900	COG0826	peptidase U32
LOR96_001905	COG3154	lipid carrier protein
LOR96_001910	COG3153	acetyltransferase
LOR96_001915	COG2827	Endonuclease containing a URI domain
LOR96_001920	COG0531	amino acid
LOR96_001925	COG1982	Orn Lys Arg decarboxylase major
LOR96_001935	COG3787	Belongs to the UPF0306 family
LOR96_001940	COG0702	epimerase
LOR96_001945	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LOR96_001950	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
LOR96_001955	COG3454	Phosphonate metabolism
LOR96_001960	COG4778	phosphonate C-P lyase system protein PhnL
LOR96_001965	COG4107	phosphonate C-P lyase system protein PhnK
LOR96_001970	COG3627	carbon phosphorus lyase activity
LOR96_001975	COG3626	phosphonate metabolism
LOR96_001980	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
LOR96_001985	COG3624	Phosphonate C-P lyase system protein PhnG
LOR96_002005	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
LOR96_002020	COG2927	DNA polymerase III (CHI subunit)
LOR96_002025	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LOR96_002030	COG0795	lipopolysaccharide-transporting ATPase activity
LOR96_002035	COG0795	lipopolysaccharide-transporting ATPase activity
LOR96_002075	COG3077	Addiction module antitoxin, RelB DinJ family
LOR96_002180	COG5492	domain, Protein
LOR96_002200	COG3119	arylsulfatase activity
LOR96_002205	COG1349	DNA-binding transcription factor activity
LOR96_002215	COG2222	sugar isomerase
LOR96_002220	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_002225	COG3715	PTS system
LOR96_002230	COG3716	PTS system mannose fructose sorbose family IID component
LOR96_002240	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LOR96_002250	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_002260	COG0641	radical SAM
LOR96_002265	COG3119	arylsulfatase activity
LOR96_002290	COG0859	PFAM glycosyl transferase family 9
LOR96_002305	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_002310	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LOR96_002320	COG2376	Dihydroxyacetone kinase
LOR96_002325	COG1461	Dihydroxyacetone kinase
LOR96_002330	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
LOR96_002330	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_002330	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LOR96_002370	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
LOR96_002385	COG2823	Periplasmic or secreted lipoprotein
LOR96_002395	COG4667	esterase of the alpha-beta hydrolase superfamily
LOR96_002400	COG0084	hydrolase, TatD family'
LOR96_002405	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LOR96_002420	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LOR96_002430	COG3726	membrane protein affecting hemolysin expression
LOR96_002435	COG0560	Phosphoserine phosphatase
LOR96_002450	COG0488	(ABC) transporter
LOR96_002475	COG0741	lytic transglycosylase activity
LOR96_002480	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
LOR96_002485	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
LOR96_002490	COG0406	alpha-ribazole phosphatase activity
LOR96_002495	COG3708	Transcriptional regulator
LOR96_002495	COG2207	Transcriptional regulator
LOR96_002500	COG3045	CreA protein
LOR96_002505	COG0745	RESPONSE REGULATOR receiver
LOR96_002540	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LOR96_002545	COG0521	Mo-molybdopterin cofactor biosynthetic process
LOR96_002550	COG0477	Major facilitator Superfamily
LOR96_002560	COG1584	GPR1 FUN34 yaaH family protein
LOR96_002565	COG0443	Heat shock 70 kDa protein
LOR96_002575	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LOR96_002580	COG0583	DNA-binding transcription factor activity
LOR96_002590	COG0196	riboflavin kinase activity
LOR96_002600	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LOR96_002605	COG1047	Peptidyl-prolyl cis-trans
LOR96_002610	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LOR96_002625	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LOR96_002635	COG2966	Psort location CytoplasmicMembrane, score
LOR96_002660	COG2967	ApaG domain
LOR96_002665	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LOR96_002670	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LOR96_002680	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LOR96_002690	COG0564	pseudouridine synthase activity
LOR96_002695	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LOR96_002700	COG0417	DNA replication proofreading
LOR96_002705	COG0586	Pfam SNARE associated Golgi protein
LOR96_002715	COG1178	ABC-type Fe3 transport system permease component
LOR96_002720	COG4143	(ABC) transporter
LOR96_002735	COG2814	Major facilitator Superfamily
LOR96_002745	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LOR96_002750	COG0473	3-isopropylmalate dehydrogenase activity
LOR96_002765	COG1022	Amp-dependent synthetase and ligase
LOR96_002770	COG0028	Belongs to the TPP enzyme family
LOR96_002795	COG0275	rRNA processing
LOR96_002800	COG3116	cell division
LOR96_002805	COG0768	penicillin binding
LOR96_002810	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LOR96_002815	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LOR96_002830	COG0772	Belongs to the SEDS family
LOR96_002835	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LOR96_002840	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LOR96_002850	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LOR96_002855	COG0849	cell division
LOR96_002860	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LOR96_002885	COG0494	nUDIX hydrolase
LOR96_002905	COG0516	GMP reductase activity
LOR96_002910	COG1459	type II secretion system
LOR96_002915	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LOR96_002920	COG4969	Belongs to the N-Me-Phe pilin family
LOR96_002935	COG3725	Membrane protein required for beta-lactamase induction
LOR96_002940	COG1113	amino acid transport
LOR96_002945	COG2186	Transcriptional regulator
LOR96_002950	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
LOR96_002955	COG0508	dehydrogenase complex catalyzes the overall conversion of
LOR96_002960	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LOR96_002970	COG1049	propionate catabolic process, 2-methylcitrate cycle
LOR96_002975	COG3112	Uncharacterised protein family (UPF0231)
LOR96_002990	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LOR96_003000	COG2132	Multicopper oxidase
LOR96_003010	COG0288	reversible hydration of carbon dioxide
LOR96_003015	COG1131	(ABC) transporter
LOR96_003020	COG0842	Transport permease protein
LOR96_003025	COG0726	polysaccharide deacetylase
LOR96_003030	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
LOR96_003035	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LOR96_003040	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LOR96_003045	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LOR96_003050	COG0617	tRNA 3'-terminal CCA addition
LOR96_003065	COG1489	DNA binding
LOR96_003070	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LOR96_003075	COG1643	Atp-dependent helicase
LOR96_003080	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LOR96_003085	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LOR96_003095	COG0316	Belongs to the HesB IscA family
LOR96_003100	COG2860	membrane
LOR96_003110	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LOR96_003115	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LOR96_003120	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LOR96_003130	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LOR96_003135	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LOR96_003140	COG3956	TIGRFAM MazG family protein
LOR96_003145	COG0504	CTP synthase activity
LOR96_003155	COG0602	queuosine metabolic process
LOR96_003160	COG0720	synthase
LOR96_003165	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LOR96_003175	COG0175	sulfate reduction
LOR96_003190	COG2234	aminopeptidase activity
LOR96_003195	COG1648	precorrin-2 dehydrogenase activity
LOR96_003195	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LOR96_003200	COG0175	sulfate reduction
LOR96_003205	COG2895	sulfate adenylyltransferase (ATP) activity
LOR96_003210	COG0529	Catalyzes the synthesis of activated sulfate
LOR96_003220	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LOR96_003230	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LOR96_003235	COG0585	pseudouridine synthase activity
LOR96_003240	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LOR96_003250	COG1388	LysM domain
LOR96_003250	COG4942	peptidase
LOR96_003255	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LOR96_003260	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LOR96_003330	COG0784	Response regulator, receiver
LOR96_003330	COG2205	protein histidine kinase activity
LOR96_003350	COG0741	lytic transglycosylase activity
LOR96_003480	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LOR96_003500	COG3397	chitin binding
LOR96_003510	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LOR96_003555	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LOR96_003565	COG3031	protein transport across the cell outer membrane
LOR96_003590	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
LOR96_003590	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
LOR96_003605	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LOR96_003610	COG2137	regulation of response to DNA damage stimulus
LOR96_003615	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LOR96_003620	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LOR96_003660	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LOR96_003665	COG1238	metal cluster binding
LOR96_003670	COG2918	glutathione biosynthetic process
LOR96_003675	COG1854	S-ribosylhomocysteine lyase activity
LOR96_003680	COG4536	flavin adenine dinucleotide binding
LOR96_003685	COG4137	Cytochrome C assembly protein
LOR96_003690	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LOR96_003700	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LOR96_003705	COG0336	Belongs to the RNA methyltransferase TrmD family
LOR96_003710	COG0335	large ribosomal subunit rRNA binding
LOR96_003715	COG3137	Salt-induced outer membrane protein
LOR96_003720	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LOR96_003725	COG3279	Response regulator of the LytR AlgR family
LOR96_003730	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LOR96_003735	COG1605	Chorismate mutase
LOR96_003735	COG0287	Prephenate dehydrogenase
LOR96_003740	COG1605	Chorismate mutase
LOR96_003740	COG0077	Prephenate dehydratase
LOR96_003750	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LOR96_003755	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LOR96_003760	COG0564	pseudouridine synthase activity
LOR96_003765	COG1496	oxidoreductase activity
LOR96_003770	COG0542	response to heat
LOR96_003805	COG3021	interspecies interaction between organisms
LOR96_003810	COG0741	lytic transglycosylase activity
LOR96_003810	COG1388	LysM domain
LOR96_003820	COG2226	methyltransferase
LOR96_003830	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LOR96_003840	COG1960	acyl-CoA dehydrogenase activity
LOR96_003845	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LOR96_003850	COG0121	glutamine amidotransferase
LOR96_003855	COG3034	peptidoglycan biosynthetic process
LOR96_003865	COG1805	sodium ion transport
LOR96_003870	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LOR96_003875	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LOR96_003880	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LOR96_003890	COG1477	protein flavinylation
LOR96_003895	COG2991	Protein conserved in bacteria
LOR96_003905	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LOR96_003910	COG2195	Cleaves the N-terminal amino acid of tripeptides
LOR96_003915	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LOR96_003920	COG1073	alpha beta
LOR96_003935	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LOR96_003970	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LOR96_003990	COG4126	flavin adenine dinucleotide binding
LOR96_004000	COG2974	May be involved in recombination
LOR96_004005	COG1940	carbohydrate kinase activity
LOR96_004010	COG0419	ATPase involved in DNA repair
LOR96_004015	COG0420	3'-5' exonuclease activity
LOR96_004020	COG0745	RESPONSE REGULATOR receiver
LOR96_004025	COG5002	protein histidine kinase activity
LOR96_004040	COG1113	amino acid transport
LOR96_004045	COG0366	Alpha amylase catalytic
LOR96_004050	COG0300	oxidoreductase activity
LOR96_004055	COG0450	alkyl hydroperoxide reductase
LOR96_004060	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
LOR96_004075	COG1862	Preprotein translocase
LOR96_004080	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LOR96_004085	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LOR96_004090	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LOR96_004095	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LOR96_004095	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LOR96_004100	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LOR96_004110	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LOR96_004115	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LOR96_004120	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LOR96_004125	COG0142	geranyltranstransferase activity
LOR96_004160	COG0693	protein deglycase activity
LOR96_004165	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LOR96_004170	COG1666	GTP binding
LOR96_004175	COG2814	Major facilitator Superfamily
LOR96_004185	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LOR96_004190	COG1845	cytochrome c oxidase, subunit III
LOR96_004195	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LOR96_004200	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LOR96_004210	COG2223	nitrite transmembrane transporter activity
LOR96_004215	COG3056	Lipoprotein
LOR96_004220	COG0271	Belongs to the BolA IbaG family
LOR96_004230	COG0740	serine-type endopeptidase activity
LOR96_004235	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LOR96_004240	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LOR96_004245	COG0776	regulation of translation
LOR96_004250	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LOR96_004255	COG1555	photosystem II stabilization
LOR96_004260	COG0824	Thioesterase
LOR96_004265	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LOR96_004270	COG4533	DNA binding
LOR96_004285	COG1522	sequence-specific DNA binding
LOR96_004290	COG1132	(ABC) transporter
LOR96_004295	COG1132	(ABC) transporter
LOR96_004300	COG0347	Belongs to the P(II) protein family
LOR96_004305	COG0004	ammonium transporteR
LOR96_004310	COG1946	Acyl-CoA thioesterase
LOR96_004315	COG3695	enzyme binding
LOR96_004340	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LOR96_004345	COG0254	rRNA binding
LOR96_004350	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LOR96_004355	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_004360	COG1309	transcriptional regulator
LOR96_004365	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
LOR96_004370	COG1196	nuclear chromosome segregation
LOR96_004370	COG3264	Mechanosensitive ion channel
LOR96_004385	COG2832	Protein of unknown function (DUF454)
LOR96_004390	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LOR96_004430	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LOR96_004435	COG0326	Molecular chaperone. Has ATPase activity
LOR96_004450	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
LOR96_004455	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LOR96_004460	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LOR96_004460	COG4651	solute:proton antiporter activity
LOR96_004465	COG0737	Belongs to the 5'-nucleotidase family
LOR96_004470	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LOR96_004475	COG3735	TraB family
LOR96_004480	COG2217	Heavy metal translocating P-type atpase
LOR96_004485	COG0789	Transcriptional regulator
LOR96_004490	COG1585	Membrane protein implicated in regulation of membrane protease activity
LOR96_004495	COG0330	HflC and HflK could
LOR96_004500	COG3118	belongs to the thioredoxin family
LOR96_004505	COG0300	oxidoreductase activity
LOR96_004510	COG2755	lipolytic protein G-D-S-L family
LOR96_004515	COG4181	ATPase activity
LOR96_004520	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LOR96_004525	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LOR96_004530	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LOR96_004535	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LOR96_004540	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LOR96_004565	COG3188	usher protein
LOR96_004570	COG3121	Chaperone
LOR96_004600	COG2501	S4 domain
LOR96_004605	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LOR96_004620	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LOR96_004625	COG1393	Belongs to the ArsC family
LOR96_004635	COG1022	Amp-dependent synthetase and ligase
LOR96_004660	COG3038	cytochrome b561
LOR96_004690	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LOR96_004700	COG1215	transferase activity, transferring glycosyl groups
LOR96_004720	COG3250	beta-galactosidase activity
LOR96_004735	COG1309	transcriptional regulator
LOR96_004765	COG2197	response regulator
LOR96_004770	COG1278	Cold shock
LOR96_004790	COG3706	GGDEF domain
LOR96_004800	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LOR96_004810	COG2921	Belongs to the UPF0250 family
LOR96_004815	COG1686	Belongs to the peptidase S11 family
LOR96_004820	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LOR96_004825	COG0772	Belongs to the SEDS family
LOR96_004830	COG0768	penicillin binding
LOR96_004835	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LOR96_004840	COG0799	negative regulation of ribosome biogenesis
LOR96_004845	COG0582	viral genome integration into host DNA
LOR96_004905	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LOR96_004970	COG0305	Participates in initiation and elongation during chromosome replication
LOR96_004995	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LOR96_005070	COG0616	signal peptide processing
LOR96_005110	COG4386	tail sheath protein
LOR96_005150	COG3299	homolog of phage Mu protein gp47
LOR96_005165	COG5301	cellulose 1,4-beta-cellobiosidase activity
LOR96_005175	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LOR96_005180	COG1466	dna polymerase III delta subunit
LOR96_005185	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
LOR96_005195	COG2888	peptidyl-tyrosine sulfation
LOR96_005200	COG1126	abc transporter atp-binding protein
LOR96_005205	COG0765	amino acid transport
LOR96_005210	COG0765	amino acid transport
LOR96_005220	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LOR96_005225	COG4535	Mg2 and Co2 transporter CorC
LOR96_005230	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LOR96_005235	COG1702	phosphate starvation-inducible protein PhoH
LOR96_005240	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LOR96_005245	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LOR96_005280	COG0367	asparagine synthase
LOR96_005285	COG0647	UMP catabolic process
LOR96_005290	COG1846	Transcriptional regulator
LOR96_005290	COG1940	carbohydrate kinase activity
LOR96_005295	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LOR96_005305	COG1263	PTS System
LOR96_005305	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_005305	COG2190	(PTS) system
LOR96_005330	COG0735	belongs to the Fur family
LOR96_005340	COG0840	transmembrane signaling receptor activity
LOR96_005350	COG0596	Alpha beta hydrolase
LOR96_005355	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
LOR96_005360	COG0033	Phosphoglucomutase
LOR96_005370	COG0745	RESPONSE REGULATOR receiver
LOR96_005375	COG2205	protein histidine kinase activity
LOR96_005380	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
LOR96_005385	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
LOR96_005405	COG3272	Protein of unknown function (DUF1722)
LOR96_005410	COG0415	Belongs to the DNA photolyase family
LOR96_005415	COG5212	phosphodiesterase
LOR96_005420	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LOR96_005425	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LOR96_005430	COG1984	allophanate hydrolase subunit 2
LOR96_005435	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LOR96_005470	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LOR96_005475	COG1053	succinate dehydrogenase
LOR96_005480	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LOR96_005485	COG0567	Dehydrogenase, E1 component
LOR96_005490	COG0508	dehydrogenase complex catalyzes the overall conversion of
LOR96_005495	COG0045	succinate-CoA ligase (ADP-forming) activity
LOR96_005500	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LOR96_005505	COG0737	Belongs to the 5'-nucleotidase family
LOR96_005510	COG1271	oxidase subunit
LOR96_005515	COG1294	oxidase, subunit
LOR96_005520	COG4890	Cyd operon protein YbgT
LOR96_005525	COG3790	cyd operon protein YbgE
LOR96_005530	COG0824	Thioesterase
LOR96_005535	COG0811	peptide transport
LOR96_005540	COG0848	biopolymer transport protein
LOR96_005545	COG3064	Membrane
LOR96_005545	COG3064	Membrane
LOR96_005550	COG0823	Involved in the tonB-independent uptake of proteins
LOR96_005555	COG2885	chlorophyll binding
LOR96_005560	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
LOR96_005600	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LOR96_005610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_005610	COG2205	protein histidine kinase activity
LOR96_005620	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LOR96_005625	COG0588	phosphoglycerate mutase activity
LOR96_005635	COG2017	converts alpha-aldose to the beta-anomer
LOR96_005645	COG1085	galactose-1-phosphate uridylyltransferase
LOR96_005650	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LOR96_005665	COG2005	Transcriptional regulator
LOR96_005665	COG3585	molybdate ion transport
LOR96_005675	COG0725	ABC transporter, periplasmic molybdate-binding protein
LOR96_005680	COG4149	molybdate abc transporter
LOR96_005690	COG0561	phosphatase activity
LOR96_005695	COG2706	6-phosphogluconolactonase activity
LOR96_005710	COG0156	8-amino-7-oxononanoate synthase activity
LOR96_005715	COG2226	methyltransferase
LOR96_005730	COG0556	nucleotide-excision repair
LOR96_005735	COG4628	conserved protein (DUF2132)
LOR96_005750	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_005755	COG1120	ATPase activity
LOR96_005760	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LOR96_005765	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LOR96_005775	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LOR96_005780	COG0314	molybdopterin synthase activity
LOR96_005785	COG0670	Belongs to the BI1 family
LOR96_005790	COG0842	Transport permease protein
LOR96_005795	COG0842	Transport permease protein
LOR96_005800	COG1131	(ABC) transporter
LOR96_005805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_005810	COG1309	transcriptional regulator
LOR96_005815	COG0513	Belongs to the DEAD box helicase family
LOR96_005820	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LOR96_005830	COG1686	Belongs to the peptidase S11 family
LOR96_005835	COG0277	FAD linked oxidase domain protein
LOR96_005855	COG2261	transglycosylase associated protein
LOR96_005865	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
LOR96_005875	COG3639	organic phosphonate transmembrane transporter activity
LOR96_005880	COG4807	Protein conserved in bacteria
LOR96_005885	COG2897	thiosulfate sulfurtransferase activity
LOR96_005890	COG1732	Glycine betaine
LOR96_005895	COG1174	glycine betaine transport
LOR96_005900	COG1125	glycine betaine transport
LOR96_005905	COG1174	glycine betaine transport
LOR96_005910	COG0531	amino acid
LOR96_005915	COG1982	Orn Lys Arg decarboxylase major
LOR96_005925	COG0697	spore germination
LOR96_005940	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LOR96_005945	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
LOR96_005950	COG1126	abc transporter atp-binding protein
LOR96_005955	COG0765	amino acid transport
LOR96_005960	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_005980	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LOR96_005985	COG2239	Acts as a magnesium transporter
LOR96_005990	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LOR96_005995	COG0488	(ABC) transporter
LOR96_006000	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LOR96_006005	COG0303	'Molybdopterin
LOR96_006025	COG0583	DNA-binding transcription factor activity
LOR96_006030	COG0477	Major facilitator Superfamily
LOR96_006035	COG0302	gtp cyclohydrolase
LOR96_006040	COG2311	Membrane
LOR96_006065	COG2949	membrane
LOR96_006070	COG0281	malic enzyme
LOR96_006080	COG0583	DNA-binding transcription factor activity
LOR96_006090	COG1346	cytolysis
LOR96_006095	COG1380	Effector of murein hydrolase LrgA
LOR96_006105	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LOR96_006105	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LOR96_006110	COG0489	protein tyrosine kinase activity
LOR96_006115	COG0572	uridine kinase
LOR96_006120	COG0717	Belongs to the dCTP deaminase family
LOR96_006125	COG2982	Protein involved in outer membrane biogenesis
LOR96_006130	COG3069	C4-dicarboxylate transmembrane transporter activity
LOR96_006135	COG1253	flavin adenine dinucleotide binding
LOR96_006140	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LOR96_006145	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LOR96_006150	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LOR96_006160	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LOR96_006160	COG0140	phosphoribosyl-ATP diphosphatase activity
LOR96_006170	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LOR96_006180	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LOR96_006180	COG0131	Imidazoleglycerol-phosphate dehydratase
LOR96_006185	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LOR96_006190	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LOR96_006205	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LOR96_006210	COG0625	glutathione transferase activity
LOR96_006225	COG0626	cystathionine gamma-synthase activity
LOR96_006235	COG1686	Belongs to the peptidase S11 family
LOR96_006240	COG1760	l-serine dehydratase
LOR96_006245	COG0814	amino acid
LOR96_006250	COG1349	DNA-binding transcription factor activity
LOR96_006260	COG0671	phosphoesterase, PA-phosphatase related
LOR96_006270	COG2985	domain, Protein
LOR96_006270	COG0569	domain protein
LOR96_006290	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LOR96_006295	COG3842	ATPase activity
LOR96_006300	COG1176	ABC-type spermidine putrescine transport system, permease component I
LOR96_006305	COG1177	transmembrane transport
LOR96_006320	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_006325	COG4160	amino acid transport
LOR96_006330	COG4215	(ABC) transporter
LOR96_006335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_006340	COG1126	abc transporter atp-binding protein
LOR96_006350	COG0393	Putative heavy-metal-binding
LOR96_006355	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LOR96_006360	COG0702	epimerase
LOR96_006365	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LOR96_006370	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LOR96_006375	COG1151	hydroxylamine reductase activity
LOR96_006380	COG2431	L-lysine efflux transmembrane transporter activity
LOR96_006385	COG3593	DNA synthesis involved in DNA repair
LOR96_006390	COG2990	Protein conserved in bacteria
LOR96_006395	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_006405	COG1278	Cold shock
LOR96_006410	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LOR96_006415	COG0542	response to heat
LOR96_006420	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LOR96_006430	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LOR96_006440	COG0492	ferredoxin-NADP+ reductase activity
LOR96_006445	COG1522	sequence-specific DNA binding
LOR96_006450	COG1674	ftsk spoiiie
LOR96_006450	COG3107	peptidoglycan biosynthetic process
LOR96_006455	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LOR96_006460	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LOR96_006465	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LOR96_006470	COG2814	Major facilitator Superfamily
LOR96_006475	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LOR96_006480	COG1882	Formate acetyltransferase
LOR96_006485	COG2116	formate transmembrane transporter activity
LOR96_006490	COG1944	ATP diphosphatase activity
LOR96_006495	COG0252	asparaginase activity
LOR96_006505	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LOR96_006515	COG0539	negative regulation of cytoplasmic translation
LOR96_006525	COG2333	competence protein COMEC
LOR96_006525	COG0658	competence protein
LOR96_006535	COG1663	tetraacyldisaccharide 4'-kinase activity
LOR96_006540	COG5383	Protein conserved in bacteria
LOR96_006550	COG1278	Cold shock
LOR96_006555	COG2835	tetraacyldisaccharide 4'-kinase activity
LOR96_006560	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LOR96_006565	COG3173	Aminoglycoside phosphotransferase
LOR96_006570	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LOR96_006575	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LOR96_006580	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
LOR96_006590	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LOR96_006595	COG2989	Protein conserved in bacteria
LOR96_006600	COG3108	Peptidase M15
LOR96_006605	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LOR96_006610	COG1448	Aminotransferase
LOR96_006625	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LOR96_006630	COG0308	aminopeptidase N
LOR96_006635	COG0167	dihydroorotate dehydrogenase activity
LOR96_006645	COG3217	Mosc domain protein beta barrel domain protein
LOR96_006645	COG0633	Ferredoxin
LOR96_006650	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LOR96_006650	COG0116	Belongs to the methyltransferase superfamily
LOR96_006655	COG0488	(ABC) transporter
LOR96_006660	COG2995	paraquat-inducible protein a
LOR96_006665	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LOR96_006665	COG3008	intermembrane lipid transfer
LOR96_006670	COG3009	Protein conserved in bacteria
LOR96_006675	COG3130	regulation of translation
LOR96_006680	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LOR96_006685	COG1067	ATP-dependent peptidase activity
LOR96_006690	COG3120	sequence-specific DNA binding
LOR96_006700	COG5404	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division
LOR96_006705	COG3070	regulator of competence-specific genes
LOR96_006710	COG1289	transmembrane transporter activity
LOR96_006715	COG3304	Inner membrane component domain
LOR96_006720	COG0210	DNA helicase
LOR96_006725	COG1803	Methylglyoxal synthase
LOR96_006735	COG1832	CoA-binding protein
LOR96_006740	COG3785	DNA binding
LOR96_006745	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LOR96_006750	COG1254	Belongs to the acylphosphatase family
LOR96_006755	COG2920	part of a sulfur-relay system
LOR96_006765	COG0288	reversible hydration of carbon dioxide
LOR96_006785	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
LOR96_006790	COG2943	transferase activity, transferring hexosyl groups
LOR96_006805	COG0675	Transposase, IS605 OrfB family
LOR96_006820	COG1560	Kdo2-lipid A biosynthetic process
LOR96_006830	COG0628	permease
LOR96_006855	COG0418	dihydroorotase activity
LOR96_006860	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LOR96_006870	COG1530	ribonuclease E activity
LOR96_006875	COG0564	pseudouridine synthase activity
LOR96_006880	COG0424	maF-like protein
LOR96_006885	COG1399	metal-binding, possibly nucleic acid-binding protein
LOR96_006890	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LOR96_006900	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LOR96_006905	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LOR96_006915	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LOR96_006920	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LOR96_006925	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LOR96_006930	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LOR96_006935	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LOR96_006940	COG0470	DNA polymerase III
LOR96_006945	COG0084	hydrolase, TatD family'
LOR96_006950	COG1263	PTS System
LOR96_006950	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_006955	COG0537	adenosine 5'-monophosphoramidase activity
LOR96_006960	COG5633	Lipoprotein
LOR96_006965	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
LOR96_006980	COG3150	esterase
LOR96_006985	COG1252	NADH dehydrogenase
LOR96_006990	COG3134	Outer membrane lipoprotein
LOR96_006995	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LOR96_007000	COG4591	ABC-type transport system involved in lipoprotein release permease component
LOR96_007010	COG4591	ABC-type transport system involved in lipoprotein release permease component
LOR96_007030	COG2850	peptidyl-arginine hydroxylation
LOR96_007035	COG2205	protein histidine kinase activity
LOR96_007040	COG0745	RESPONSE REGULATOR receiver
LOR96_007050	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LOR96_007055	COG2915	High frequency lysogenization protein hflD homolog
LOR96_007060	COG0482	sulfurtransferase activity
LOR96_007070	COG1187	pseudouridine synthase activity
LOR96_007075	COG0538	isocitrate dehydrogenase activity
LOR96_007080	COG2771	luxR family
LOR96_007085	COG3916	Acyl-homoserine-lactone synthase
LOR96_007090	COG2723	6-phospho-beta-galactosidase activity
LOR96_007100	COG0339	signal peptide processing
LOR96_007105	COG0840	transmembrane signaling receptor activity
LOR96_007130	COG0675	Transposase, IS605 OrfB family
LOR96_007140	COG4565	transcriptional regulatory protein
LOR96_007145	COG3290	protein histidine kinase activity
LOR96_007150	COG0471	metal ion transport
LOR96_007190	COG4977	sequence-specific DNA binding
LOR96_007195	COG1702	phosphate starvation-inducible protein PhoH
LOR96_007200	COG0387	Pfam Sodium calcium exchanger
LOR96_007205	COG2375	cellular response to nickel ion
LOR96_007210	COG3850	Histidine kinase
LOR96_007220	COG1294	oxidase, subunit
LOR96_007225	COG1271	oxidase subunit
LOR96_007230	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LOR96_007235	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LOR96_007240	COG3138	arginine N-succinyltransferase
LOR96_007250	COG3724	N-succinylarginine dihydrolase activity
LOR96_007270	COG1228	amidohydrolase
LOR96_007280	COG0402	S-adenosylhomocysteine deaminase activity
LOR96_007300	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
LOR96_007305	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
LOR96_007310	COG3383	formate dehydrogenase (NAD+) activity
LOR96_007315	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_007320	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
LOR96_007330	COG3260	NADH ubiquinone oxidoreductase 20
LOR96_007335	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_007340	COG3261	NADH dehydrogenase
LOR96_007340	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
LOR96_007345	COG0650	Formate hydrogenlyase subunit 4
LOR96_007350	COG0651	ATP synthesis coupled electron transport
LOR96_007355	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_007365	COG0375	protein maturation
LOR96_007370	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
LOR96_007375	COG0298	carbon dioxide binding
LOR96_007380	COG0409	Hydrogenase expression formation protein
LOR96_007385	COG0309	Hydrogenase expression formation protein (HypE)
LOR96_007420	COG2207	Transcriptional regulator
LOR96_007420	COG3708	Transcriptional regulator
LOR96_007425	COG0012	GTP binding
LOR96_007435	COG0193	aminoacyl-tRNA hydrolase activity
LOR96_007445	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LOR96_007455	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LOR96_007460	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LOR96_007465	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LOR96_007470	COG2890	protein-(glutamine-N5) methyltransferase activity
LOR96_007485	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LOR96_007490	COG0659	secondary active sulfate transmembrane transporter activity
LOR96_007495	COG3706	GGDEF domain
LOR96_007520	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LOR96_007530	COG3381	protein complex oligomerization
LOR96_007550	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LOR96_007560	COG0673	inositol 2-dehydrogenase activity
LOR96_007565	COG0728	peptidoglycan biosynthetic process
LOR96_007590	COG3102	Protein conserved in bacteria
LOR96_007595	COG3142	Participates in the control of copper homeostasis
LOR96_007610	COG3788	relative of glutathione S-transferase, MAPEG superfamily
LOR96_007615	COG1801	Protein of unknown function DUF72
LOR96_007625	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LOR96_007630	COG0494	nUDIX hydrolase
LOR96_007640	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LOR96_007650	COG2255	four-way junction helicase activity
LOR96_007655	COG3104	oligopeptide transport
LOR96_007660	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LOR96_007665	COG1121	(ABC) transporter
LOR96_007670	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
LOR96_007675	COG0739	heme binding
LOR96_007680	COG1560	Kdo2-lipid A biosynthetic process
LOR96_007685	COG0469	pyruvate kinase activity
LOR96_007690	COG1737	Transcriptional regulator
LOR96_007695	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LOR96_007700	COG0800	Aldolase
LOR96_007710	COG2076	Multidrug Resistance protein
LOR96_007715	COG0251	oxidation-reduction process
LOR96_007720	COG1199	ATP-dependent helicase activity
LOR96_007725	COG1214	PFAM Peptidase M22, glycoprotease
LOR96_007730	COG3065	identical protein binding
LOR96_007735	COG0318	PFAM AMP-dependent synthetase and ligase
LOR96_007740	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LOR96_007745	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LOR96_007750	COG2894	cell division
LOR96_007755	COG0850	regulation of cytokinetic process
LOR96_007760	COG3100	YcgL domain-containing protein
LOR96_007765	COG0179	Fumarylacetoacetate (FAA) hydrolase
LOR96_007770	COG2983	Belongs to the UPF0260 family
LOR96_007790	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LOR96_007800	COG2719	SpoVR family
LOR96_007805	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LOR96_007810	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LOR96_007815	COG2814	Major facilitator Superfamily
LOR96_007825	COG2200	EAL domain
LOR96_007825	COG2202	Pas domain
LOR96_007825	COG2199	diguanylate cyclase activity
LOR96_007845	COG2718	Belongs to the UPF0229 family
LOR96_007850	COG2766	serine protein kinase
LOR96_007860	COG3713	MltA-interacting MipA family protein
LOR96_007865	COG2194	sulfuric ester hydrolase activity
LOR96_007880	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LOR96_007885	COG3139	Protein of unknown function (DUF1315)
LOR96_007890	COG1335	isochorismatase
LOR96_007895	COG0252	asparaginase activity
LOR96_007900	COG0616	signal peptide processing
LOR96_007905	COG0778	Nitroreductase
LOR96_007915	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LOR96_007925	COG0494	nUDIX hydrolase
LOR96_007930	COG0708	Exodeoxyribonuclease III
LOR96_007960	COG0788	formyltetrahydrofolate deformylase activity
LOR96_007970	COG1752	Esterase of the alpha-beta hydrolase superfamily
LOR96_007975	COG0745	RESPONSE REGULATOR receiver
LOR96_007995	COG1454	alcohol dehydrogenase
LOR96_007995	COG1012	belongs to the aldehyde dehydrogenase family
LOR96_008005	COG2095	MarC family integral membrane protein
LOR96_008010	COG4166	transmembrane transport
LOR96_008025	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LOR96_008040	COG3099	Belongs to the UPF0263 family
LOR96_008045	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LOR96_008065	COG2350	Protein conserved in bacteria
LOR96_008080	COG3710	Transcriptional regulator
LOR96_008115	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LOR96_008140	COG0727	PFAM Uncharacterised protein family (UPF0153)
LOR96_008145	COG3047	cAMP biosynthetic process
LOR96_008160	COG0133	tryptophan synthase activity
LOR96_008165	COG0134	indole-3-glycerol-phosphate synthase activity
LOR96_008165	COG0135	phosphoribosylanthranilate isomerase activity
LOR96_008175	COG0512	Glutamine amidotransferase of anthranilate synthase
LOR96_008185	COG0613	PHP domain protein
LOR96_008190	COG0009	L-threonylcarbamoyladenylate synthase
LOR96_008210	COG1187	pseudouridine synthase activity
LOR96_008220	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_008225	COG0616	signal peptide processing
LOR96_008240	COG0583	DNA-binding transcription factor activity
LOR96_008255	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LOR96_008265	COG0671	phosphoesterase, PA-phosphatase related
LOR96_008270	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
LOR96_008275	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LOR96_008295	COG0023	Translation Initiation Factor
LOR96_008305	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LOR96_008310	COG5001	Diguanylate cyclase
LOR96_008310	COG5002	protein histidine kinase activity
LOR96_008310	COG3447	MASE1 domain protein
LOR96_008315	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
LOR96_008320	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LOR96_008330	COG4659	FMN binding
LOR96_008340	COG2207	Transcriptional regulator
LOR96_008340	COG3708	Transcriptional regulator
LOR96_008355	COG4657	Part of a membrane complex involved in electron transport
LOR96_008365	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LOR96_008375	COG0673	inositol 2-dehydrogenase activity
LOR96_008380	COG0385	Bile acid
LOR96_008385	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LOR96_008390	COG5339	Protein conserved in bacteria
LOR96_008395	COG1482	cell wall glycoprotein biosynthetic process
LOR96_008400	COG0114	fumarate hydratase activity
LOR96_008410	COG1940	carbohydrate kinase activity
LOR96_008415	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LOR96_008435	COG1742	UPF0060 membrane protein
LOR96_008440	COG4221	oxidoreductase activity
LOR96_008445	COG3023	N-Acetylmuramoyl-L-alanine amidase
LOR96_008465	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LOR96_008505	COG1011	Hydrolase
LOR96_008515	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
LOR96_008520	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LOR96_008525	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LOR96_008530	COG0589	response to stress
LOR96_008560	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
LOR96_008565	COG3623	hexulose-6-phosphate isomerase
LOR96_008570	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LOR96_008575	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LOR96_008585	COG0531	amino acid
LOR96_008595	COG0745	RESPONSE REGULATOR receiver
LOR96_008600	COG2205	protein histidine kinase activity
LOR96_008615	COG2207	Transcriptional regulator
LOR96_008620	COG1881	PFAM PEBP family protein
LOR96_008630	COG3591	Belongs to the peptidase S1B family
LOR96_008635	COG1643	Atp-dependent helicase
LOR96_008640	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LOR96_008645	COG3784	Protein of unknown function (DUF1318)
LOR96_008660	COG2911	Protein conserved in bacteria
LOR96_008665	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LOR96_008670	COG3187	Heat shock protein
LOR96_008675	COG3042	response to heat
LOR96_008680	COG1285	pathogenesis
LOR96_008690	COG0674	pyruvate-flavodoxin oxidoreductase activity
LOR96_008690	COG1013	pyruvate-flavodoxin oxidoreductase activity
LOR96_008690	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_008690	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LOR96_008705	COG4166	transmembrane transport
LOR96_008710	COG2866	Carboxypeptidase
LOR96_008715	COG4948	Mandelate Racemase Muconate Lactonizing
LOR96_008720	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LOR96_008730	COG5642	Protein of unknown function (DUF2384)
LOR96_008735	COG5654	RES domain protein
LOR96_008740	COG3768	UPF0283 membrane protein
LOR96_008745	COG3106	COG3106 Predicted ATPase
LOR96_008755	COG1983	PspC domain protein
LOR96_008765	COG1842	Phage shock protein A
LOR96_008770	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LOR96_008785	COG4166	transmembrane transport
LOR96_008795	COG4171	peptide transport system, permease
LOR96_008800	COG4172	Belongs to the ABC transporter superfamily
LOR96_008805	COG4172	Belongs to the ABC transporter superfamily
LOR96_008815	COG3104	oligopeptide transport
LOR96_008825	COG0484	heat shock protein binding
LOR96_008870	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LOR96_008875	COG3133	Outer membrane lipoprotein
LOR96_008880	COG1846	Transcriptional regulator
LOR96_008890	COG4989	oxidoreductase activity
LOR96_008895	COG3313	Fe-S protein
LOR96_008900	COG2194	sulfuric ester hydrolase activity
LOR96_008905	COG1309	transcriptional regulator
LOR96_008910	COG1902	pentaerythritol trinitrate reductase activity
LOR96_008925	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LOR96_008930	COG0791	NLP P60 protein
LOR96_008935	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LOR96_008945	COG1609	Transcriptional regulator
LOR96_008950	COG0583	DNA-binding transcription factor activity
LOR96_008955	COG2814	Major facilitator Superfamily
LOR96_008960	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LOR96_008965	COG0307	riboflavin synthase, alpha
LOR96_009000	COG1376	ErfK ybiS ycfS ynhG family protein
LOR96_009000	COG1388	LysM domain
LOR96_009005	COG2166	iron-sulfur cluster assembly
LOR96_009015	COG0719	Fe-S assembly protein
LOR96_009020	COG0396	ATPase activity
LOR96_009025	COG0719	Fe-S assembly protein
LOR96_009030	COG0316	Belongs to the HesB IscA family
LOR96_009035	COG2050	protein possibly involved in aromatic compounds catabolism
LOR96_009040	COG0277	FAD linked oxidase domain protein
LOR96_009040	COG0247	lactate metabolic process
LOR96_009045	COG0628	permease
LOR96_009055	COG0574	Belongs to the PEP-utilizing enzyme family
LOR96_009055	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LOR96_009060	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LOR96_009065	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LOR96_009075	COG4771	TonB-dependent receptor
LOR96_009080	COG3720	iron ion transport
LOR96_009085	COG4558	Periplasmic binding protein
LOR96_009090	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_009095	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LOR96_009105	COG0095	Lipoate-protein ligase
LOR96_009110	COG0791	NLP P60 protein
LOR96_009115	COG2076	Multidrug Resistance protein
LOR96_009120	COG2076	Multidrug Resistance protein
LOR96_009125	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LOR96_009140	COG0463	Glycosyl transferase, family 2
LOR96_009145	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LOR96_009155	COG4139	cobalamin transport
LOR96_009200	COG2184	nucleotidyltransferase activity
LOR96_009215	COG2314	TM2 domain
LOR96_009220	COG0776	regulation of translation
LOR96_009290	COG0803	Belongs to the bacterial solute-binding protein 9 family
LOR96_009295	COG1121	(ABC) transporter
LOR96_009300	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LOR96_009305	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LOR96_009310	COG3001	Fructosamine kinase
LOR96_009320	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LOR96_009325	COG1988	membrane-bound metal-dependent
LOR96_009330	COG1823	symporter activity
LOR96_009335	COG3023	N-Acetylmuramoyl-L-alanine amidase
LOR96_009345	COG2814	Major facilitator Superfamily
LOR96_009355	COG0501	Belongs to the peptidase M48B family
LOR96_009360	COG0793	Belongs to the peptidase S41A family
LOR96_009370	COG1956	GAF domain-containing protein
LOR96_009375	COG2995	paraquat-inducible protein a
LOR96_009380	COG3008	intermembrane lipid transfer
LOR96_009385	COG4251	negative regulation of phosphorylation
LOR96_009385	COG2203	Gaf domain
LOR96_009385	COG5001	Diguanylate cyclase
LOR96_009385	COG3706	GGDEF domain
LOR96_009595	COG3772	lysozyme
LOR96_009645	COG1674	ftsk spoiiie
LOR96_009645	COG1178	ABC-type Fe3 transport system permease component
LOR96_009765	COG1276	copper resistance
LOR96_009770	COG2372	response to copper ion
LOR96_009775	COG1528	Iron-storage protein
LOR96_009795	COG1770	oligopeptidase
LOR96_009805	COG3097	Belongs to the UPF0267 family
LOR96_009810	COG3141	response to X-ray
LOR96_009815	COG0513	Belongs to the DEAD box helicase family
LOR96_009835	COG0494	nUDIX hydrolase
LOR96_009840	COG1760	l-serine dehydratase
LOR96_009845	COG1253	flavin adenine dinucleotide binding
LOR96_009850	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_009850	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_009855	COG3715	PTS system
LOR96_009860	COG3716	PTS system mannose fructose sorbose family IID component
LOR96_009865	COG4811	Protein of unknown function (DUF986)
LOR96_009870	COG1971	Probably functions as a manganese efflux pump
LOR96_009890	COG1960	acyl-CoA dehydrogenase activity
LOR96_009900	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
LOR96_009930	COG2226	methyltransferase
LOR96_009935	COG0768	penicillin binding
LOR96_009940	COG1496	oxidoreductase activity
LOR96_009960	COG1113	amino acid transport
LOR96_009995	COG2207	Transcriptional regulator
LOR96_010015	COG1132	(ABC) transporter
LOR96_010025	COG2203	Gaf domain
LOR96_010025	COG3706	GGDEF domain
LOR96_010025	COG4251	negative regulation of phosphorylation
LOR96_010025	COG5001	Diguanylate cyclase
LOR96_010045	COG1181	Belongs to the D-alanine--D-alanine ligase family
LOR96_010065	COG1278	Cold shock
LOR96_010070	COG1278	Cold shock
LOR96_010075	COG1278	Cold shock
LOR96_010090	COG1917	Cupin 2, conserved barrel domain protein
LOR96_010090	COG2169	Transcriptional regulator
LOR96_010095	COG1447	Phosphotransferase system cellobiose-specific component IIA
LOR96_010100	COG2723	6-phospho-beta-galactosidase activity
LOR96_010105	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LOR96_010110	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LOR96_010115	COG1187	pseudouridine synthase activity
LOR96_010125	COG3122	Protein conserved in bacteria
LOR96_010130	COG1757	Na H antiporter
LOR96_010145	COG2235	arginine
LOR96_010160	COG0076	glutamate decarboxylase activity
LOR96_010165	COG0531	amino acid
LOR96_010200	COG2153	protein acetylation
LOR96_010205	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LOR96_010235	COG0840	transmembrane signaling receptor activity
LOR96_010240	COG2801	Transposase and inactivated derivatives
LOR96_010260	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LOR96_010265	COG0322	excinuclease ABC activity
LOR96_010270	COG2197	response regulator
LOR96_010295	COG1113	amino acid transport
LOR96_010305	COG0531	amino acid
LOR96_010310	COG3710	Transcriptional regulator
LOR96_010315	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LOR96_010320	COG0506	proline dehydrogenase activity
LOR96_010320	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LOR96_010320	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LOR96_010325	COG1126	abc transporter atp-binding protein
LOR96_010330	COG0765	amino acid transport
LOR96_010335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_010340	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LOR96_010350	COG1191	sigma factor activity
LOR96_010390	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LOR96_010395	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LOR96_010410	COG1677	Flagellar hook-basal body complex protein FliE
LOR96_010420	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LOR96_010425	COG1317	bacterial-type flagellum organization
LOR96_010430	COG1157	protein secretion by the type III secretion system
LOR96_010445	COG1580	Controls the rotational direction of flagella during chemotaxis
LOR96_010525	COG1558	bacterial-type flagellum-dependent cell motility
LOR96_010530	COG1815	bacterial-type flagellum-dependent cell motility
LOR96_010540	COG2747	anti-sigma28 factor FlgM
LOR96_010545	COG3418	PFAM FlgN family protein
LOR96_010555	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LOR96_010560	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LOR96_010565	COG4935	Belongs to the peptidase S8 family
LOR96_010565	COG1404	Belongs to the peptidase S8 family
LOR96_010570	COG2197	response regulator
LOR96_010585	COG3188	usher protein
LOR96_010590	COG3121	Chaperone
LOR96_010600	COG3539	Fimbrial protein
LOR96_010630	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
LOR96_010635	COG0745	RESPONSE REGULATOR receiver
LOR96_010645	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LOR96_010650	COG0840	transmembrane signaling receptor activity
LOR96_010655	COG0840	transmembrane signaling receptor activity
LOR96_010660	COG0835	chemotaxis
LOR96_010665	COG0643	Histidine kinase
LOR96_010665	COG2198	Histidine kinase
LOR96_010670	COG1360	Flagellar Motor Protein
LOR96_010690	COG0589	response to stress
LOR96_010695	COG1285	pathogenesis
LOR96_010700	COG0840	transmembrane signaling receptor activity
LOR96_010720	COG1609	Transcriptional regulator
LOR96_010730	COG0604	alcohol dehydrogenase
LOR96_010730	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_010730	COG3321	synthase
LOR96_010765	COG0582	viral genome integration into host DNA
LOR96_010780	COG3423	Transcriptional regulator
LOR96_010815	COG3451	type IV secretory pathway VirB4
LOR96_010835	COG3736	Type IV secretory pathway, component VirB8
LOR96_010850	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
LOR96_010865	COG4227	nucleotidyltransferase activity
LOR96_010925	COG0471	metal ion transport
LOR96_010940	COG3051	citrate lyase alpha subunit
LOR96_010945	COG2301	Belongs to the HpcH HpaI aldolase family
LOR96_010950	COG3052	prosthetic group binding
LOR96_010955	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
LOR96_010960	COG3290	protein histidine kinase activity
LOR96_010965	COG4565	transcriptional regulatory protein
LOR96_010980	COG2271	Major facilitator Superfamily
LOR96_010985	COG1840	ABC-type Fe3 transport system, periplasmic component
LOR96_010995	COG3842	ATPase activity
LOR96_011015	COG1289	transmembrane transporter activity
LOR96_011025	COG2925	Exonuclease
LOR96_011030	COG0531	amino acid
LOR96_011035	COG4771	TonB-dependent receptor
LOR96_011045	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_011055	COG0833	amino acid
LOR96_011060	COG0583	DNA-binding transcription factor activity
LOR96_011070	COG2855	membrane
LOR96_011075	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LOR96_011080	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LOR96_011080	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LOR96_011080	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LOR96_011085	COG1105	Belongs to the carbohydrate kinase PfkB family
LOR96_011100	COG3005	denitrification pathway
LOR96_011105	COG0243	molybdopterin cofactor binding
LOR96_011125	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LOR96_011135	COG0246	Mannitol dehydrogenase
LOR96_011145	COG0523	cobalamin synthesis protein
LOR96_011150	COG0671	phosphoesterase, PA-phosphatase related
LOR96_011155	COG0791	NLP P60 protein
LOR96_011160	COG2200	EAL domain
LOR96_011165	COG4166	transmembrane transport
LOR96_011170	COG4174	ABC transporter (Permease)
LOR96_011175	COG4239	(ABC) transporter, permease
LOR96_011180	COG4172	Belongs to the ABC transporter superfamily
LOR96_011190	COG2814	Major facilitator Superfamily
LOR96_011195	COG1187	pseudouridine synthase activity
LOR96_011200	COG1061	Type III restriction enzyme res subunit
LOR96_011215	COG3082	Protein of unknown function (DUF1414)
LOR96_011220	COG3083	sulfuric ester hydrolase activity
LOR96_011245	COG3778	Protein conserved in bacteria
LOR96_011250	COG3299	homolog of phage Mu protein gp47
LOR96_011295	COG4386	tail sheath protein
LOR96_011345	COG4626	Terminase
LOR96_011345	COG1802	Transcriptional regulator
LOR96_011370	COG1876	peptidase activity
LOR96_011400	COG2815	serine threonine protein kinase
LOR96_011400	COG0515	serine threonine protein kinase
LOR96_011415	COG1403	HNH endonuclease
LOR96_011430	COG4725	Belongs to the MT-A70-like family
LOR96_011435	COG4626	Terminase
LOR96_011435	COG1802	Transcriptional regulator
LOR96_011470	COG5532	Uncharacterized conserved protein (DUF2303)
LOR96_011475	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LOR96_011525	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LOR96_011530	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LOR96_011550	COG2223	nitrite transmembrane transporter activity
LOR96_011555	COG0642	Histidine kinase
LOR96_011555	COG2198	Histidine kinase
LOR96_011565	COG0784	Response regulator, receiver
LOR96_011565	COG2205	protein histidine kinase activity
LOR96_011575	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LOR96_011580	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LOR96_011590	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LOR96_011600	COG4574	serine-type endopeptidase inhibitor activity
LOR96_011610	COG2246	polysaccharide biosynthetic process
LOR96_011625	COG0814	amino acid
LOR96_011650	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LOR96_011655	COG0596	Alpha beta hydrolase
LOR96_011660	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LOR96_011665	COG1169	isochorismate synthase
LOR96_011670	COG4575	ribosome binding
LOR96_011685	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_011690	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LOR96_011700	COG0839	Belongs to the complex I subunit 6 family
LOR96_011705	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_011710	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LOR96_011715	COG1034	ATP synthesis coupled electron transport
LOR96_011735	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_011740	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_011745	COG0583	DNA-binding transcription factor activity
LOR96_011750	COG0436	Aminotransferase
LOR96_011755	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LOR96_011760	COG0471	metal ion transport
LOR96_011760	COG0490	domain, Protein
LOR96_011770	COG3013	Belongs to the UPF0304 family
LOR96_011775	COG3092	negative regulation of chromosome organization
LOR96_011785	COG0280	phosphate acetyltransferase
LOR96_011785	COG0857	belongs to the CobB CobQ family
LOR96_011790	COG1609	Transcriptional regulator
LOR96_011805	COG3037	sugar-specific permease SgaT UlaA
LOR96_011810	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
LOR96_011815	COG0622	Phosphoesterase
LOR96_011830	COG0625	glutathione transferase activity
LOR96_011835	COG1090	epimerase
LOR96_011845	COG4160	amino acid transport
LOR96_011850	COG4215	(ABC) transporter
LOR96_011865	COG0163	prenyltransferase activity
LOR96_011870	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LOR96_011875	COG1286	toxin biosynthetic process
LOR96_011880	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
LOR96_011885	COG0285	dihydrofolate synthase activity
LOR96_011895	COG0586	Pfam SNARE associated Golgi protein
LOR96_011905	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LOR96_011930	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LOR96_011935	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LOR96_011965	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LOR96_011980	COG3101	peptidyl-lysine hydroxylation
LOR96_011985	COG0730	response to heat
LOR96_011990	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
LOR96_012000	COG2890	protein-(glutamine-N5) methyltransferase activity
LOR96_012005	COG2840	Smr protein MutS2
LOR96_012010	COG2062	phosphohistidine phosphatase, SixA
LOR96_012015	COG1250	3-hydroxyacyl-CoA dehydrogenase
LOR96_012015	COG1024	Enoyl-CoA hydratase
LOR96_012020	COG0183	Belongs to the thiolase family
LOR96_012025	COG3691	Protein conserved in bacteria
LOR96_012040	COG4235	cytochrome complex assembly
LOR96_012040	COG3088	subunit of a heme lyase
LOR96_012045	COG3088	subunit of a heme lyase
LOR96_012045	COG4235	cytochrome complex assembly
LOR96_012050	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LOR96_012055	COG1138	Cytochrome C-type biogenesis protein
LOR96_012060	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LOR96_012065	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LOR96_012070	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LOR96_012075	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LOR96_012090	COG0582	viral genome integration into host DNA
LOR96_012095	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LOR96_012150	COG2824	Alkylphosphonate utilization operon protein PhnA
LOR96_012155	COG2951	lytic endotransglycosylase activity
LOR96_012160	COG1598	PFAM Uncharacterised protein family UPF0150
LOR96_012170	COG3038	cytochrome b561
LOR96_012175	COG0436	Aminotransferase
LOR96_012185	COG3275	phosphorelay sensor kinase activity
LOR96_012190	COG3279	Response regulator of the LytR AlgR family
LOR96_012195	COG2223	nitrite transmembrane transporter activity
LOR96_012200	COG0837	glucose binding
LOR96_012220	COG1914	H( )-stimulated, divalent metal cation uptake system
LOR96_012225	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LOR96_012300	COG3530	Putative quorum-sensing-regulated virulence factor
LOR96_012305	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LOR96_012315	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
LOR96_012325	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_012340	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LOR96_012350	COG4208	sulfate ABC transporter
LOR96_012355	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LOR96_012360	COG4150	thiosulfate binding
LOR96_012370	COG1737	Transcriptional regulator
LOR96_012375	COG2731	YhcH YjgK YiaL family protein
LOR96_012390	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LOR96_012395	COG2837	iron assimilation
LOR96_012405	COG3111	PFAM Bacterial OB fold (BOF) protein
LOR96_012465	COG1671	Belongs to the UPF0178 family
LOR96_012470	COG0281	malic enzyme
LOR96_012470	COG0280	phosphate acetyltransferase
LOR96_012475	COG0494	nUDIX hydrolase
LOR96_012480	COG3005	denitrification pathway
LOR96_012485	COG3043	anaerobic respiration
LOR96_012490	COG0243	molybdopterin cofactor binding
LOR96_012495	COG3062	negative regulation of establishment of protein localization
LOR96_012500	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_012500	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_012505	COG2197	response regulator
LOR96_012515	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LOR96_012525	COG1605	Chorismate mutase
LOR96_012530	COG1393	Belongs to the ArsC family
LOR96_012535	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LOR96_012540	COG1876	peptidase activity
LOR96_012550	COG0400	carboxylic ester hydrolase activity
LOR96_012570	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LOR96_012575	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LOR96_012580	COG2716	regulation of RNA biosynthetic process
LOR96_012585	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LOR96_012590	COG0628	permease
LOR96_012595	COG4783	chaperone-mediated protein folding
LOR96_012600	COG1393	Belongs to the ArsC family
LOR96_012605	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LOR96_012610	COG2233	PERMEase
LOR96_012615	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LOR96_012620	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LOR96_012625	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LOR96_012630	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LOR96_012640	COG0581	inorganic phosphate transmembrane transporter activity
LOR96_012645	COG0573	inorganic phosphate transmembrane transporter activity
LOR96_012650	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LOR96_012665	COG2239	Acts as a magnesium transporter
LOR96_012670	COG0443	Heat shock 70 kDa protein
LOR96_012680	COG3121	Chaperone
LOR96_012700	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_012710	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LOR96_012715	COG0477	Major facilitator Superfamily
LOR96_012720	COG2205	protein histidine kinase activity
LOR96_012725	COG0745	RESPONSE REGULATOR receiver
LOR96_012730	COG3422	double-strand break repair
LOR96_012735	COG0826	peptidase U32
LOR96_012740	COG1597	lipid kinase activity
LOR96_012755	COG0351	phosphomethylpyrimidine kinase
LOR96_012770	COG0519	Catalyzes the synthesis of GMP from XMP
LOR96_012770	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LOR96_012775	COG0517	IMP dehydrogenase activity
LOR96_012775	COG0516	GMP reductase activity
LOR96_012780	COG1570	exodeoxyribonuclease VII activity
LOR96_012785	COG1645	bacterial-type flagellum-dependent swarming motility
LOR96_012795	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LOR96_012800	COG2976	Protein conserved in bacteria
LOR96_012805	COG0124	histidyl-tRNA synthetase
LOR96_012825	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LOR96_012840	COG4953	penicillin-binding protein 1C
LOR96_012845	COG2373	Large extracellular alpha-helical protein
LOR96_012860	COG2975	iron-sulfur cluster assembly
LOR96_012865	COG0633	Ferredoxin
LOR96_012870	COG0443	Heat shock 70 kDa protein
LOR96_012885	COG0822	iron-sulfur transferase activity
LOR96_012895	COG1959	2 iron, 2 sulfur cluster binding
LOR96_012900	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
LOR96_012910	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
LOR96_012915	COG3683	transport system, periplasmic component
LOR96_012920	COG3711	transcriptional antiterminator
LOR96_012925	COG2814	Major facilitator Superfamily
LOR96_012935	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LOR96_012935	COG1017	nitric oxide dioxygenase activity
LOR96_012940	COG2188	Transcriptional regulator
LOR96_012950	COG3457	Alanine racemase
LOR96_012955	COG1735	metal-dependent hydrolase with the TIM-barrel fold
LOR96_012970	COG0347	Belongs to the P(II) protein family
LOR96_012975	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LOR96_012975	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LOR96_012980	COG2204	response regulator
LOR96_012985	COG3170	Tfp pilus assembly protein FimV
LOR96_012990	COG2205	protein histidine kinase activity
LOR96_013005	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LOR96_013015	COG0560	Phosphoserine phosphatase
LOR96_013020	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_013020	COG1263	PTS System
LOR96_013030	COG1737	Transcriptional regulator
LOR96_013035	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_013045	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LOR96_013055	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LOR96_013070	COG0481	GTPase activity
LOR96_013075	COG3086	response to oxidative stress
LOR96_013085	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
LOR96_013095	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LOR96_013105	COG0513	Belongs to the DEAD box helicase family
LOR96_013120	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
LOR96_013130	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LOR96_013135	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LOR96_013140	COG0497	DNA recombination
LOR96_013145	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LOR96_013155	COG2867	negative regulation of translational initiation
LOR96_013160	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LOR96_013170	COG0582	viral genome integration into host DNA
LOR96_013200	COG3596	GTP binding
LOR96_013205	COG2378	regulation of single-species biofilm formation
LOR96_013215	COG2378	regulation of single-species biofilm formation
LOR96_013240	COG2003	Belongs to the UPF0758 family
LOR96_013295	COG3121	Chaperone
LOR96_013300	COG3188	usher protein
LOR96_013325	COG0583	DNA-binding transcription factor activity
LOR96_013400	COG1069	ribulokinase activity
LOR96_013410	COG1172	Belongs to the binding-protein-dependent transport system permease family
LOR96_013415	COG1129	ABC transporter
LOR96_013435	COG1620	l-lactate permease
LOR96_013440	COG1304	FMN binding
LOR96_013445	COG0579	oxidoreductase
LOR96_013450	COG1278	Cold shock
LOR96_013480	COG1780	Probably involved in ribonucleotide reductase function
LOR96_013485	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LOR96_013495	COG4175	Glycine betaine
LOR96_013500	COG4176	ABC-type proline glycine betaine transport system permease component
LOR96_013505	COG2113	Glycine betaine
LOR96_013515	COG2814	Major facilitator Superfamily
LOR96_013520	COG1846	Transcriptional regulator
LOR96_013530	COG1566	PFAM secretion protein HlyD family protein
LOR96_013535	COG2814	Major facilitator Superfamily
LOR96_013540	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LOR96_013545	COG3118	belongs to the thioredoxin family
LOR96_013550	COG3148	PFAM DTW domain containing protein
LOR96_013555	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LOR96_013555	COG1042	CoA-binding domain protein
LOR96_013555	COG0045	succinate-CoA ligase (ADP-forming) activity
LOR96_013560	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LOR96_013565	COG5544	Lipoprotein
LOR96_013590	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LOR96_013600	COG2011	ABC-type metal ion transport system permease component
LOR96_013605	COG1464	Belongs to the NlpA lipoprotein family
LOR96_013615	COG1720	tRNA m6t6A37 methyltransferase activity
LOR96_013620	COG0442	prolyl-tRNA aminoacylation
LOR96_013625	COG3015	lipoprotein NlpE involved in copper resistance
LOR96_013635	COG4681	YaeQ
LOR96_013645	COG4568	rho-dependent transcription termination
LOR96_013660	COG0346	lactoylglutathione lyase activity
LOR96_013675	COG0825	malonyl-CoA metabolic process
LOR96_013680	COG0587	DNA-directed DNA polymerase activity
LOR96_013685	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LOR96_013705	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LOR96_013710	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
LOR96_013720	COG0750	zinc metalloprotease
LOR96_013725	COG0575	Belongs to the CDS family
LOR96_013745	COG0528	UMP kinase activity
LOR96_013750	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LOR96_013765	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LOR96_013770	COG2171	N-acyltransferase activity
LOR96_013785	COG0564	pseudouridine synthase activity
LOR96_013790	COG3098	single-species biofilm formation
LOR96_013805	COG1611	Belongs to the LOG family
LOR96_013815	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
LOR96_013820	COG2363	Small membrane protein
LOR96_013825	COG0583	DNA-binding transcription factor activity
LOR96_013835	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LOR96_013840	COG2166	iron-sulfur cluster assembly
LOR96_013845	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LOR96_013850	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
LOR96_013870	COG0860	N-Acetylmuramoyl-L-alanine amidase
LOR96_013875	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LOR96_013875	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LOR96_013880	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LOR96_013885	COG1074	ATP-dependent DNA helicase activity
LOR96_013890	COG1025	Belongs to the peptidase M16 family
LOR96_013895	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LOR96_013900	COG4967	type IV pilus modification protein PilV
LOR96_013925	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LOR96_013930	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
LOR96_013940	COG3066	DNA modification
LOR96_013945	COG0861	Integral membrane protein TerC family
LOR96_013950	COG0667	Aldo Keto reductase
LOR96_013955	COG0477	Major facilitator Superfamily
LOR96_013960	COG0318	PFAM AMP-dependent synthetase and ligase
LOR96_013960	COG0204	Acyl-transferase
LOR96_013965	COG1609	Transcriptional regulator
LOR96_013975	COG0583	DNA-binding transcription factor activity
LOR96_013980	COG0583	DNA-binding transcription factor activity
LOR96_014035	COG2165	general secretion pathway protein
LOR96_014045	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LOR96_014075	COG1127	ABC transporter
LOR96_014080	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LOR96_014090	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LOR96_014100	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LOR96_014105	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LOR96_014110	COG4974	Belongs to the 'phage' integrase family
LOR96_014115	COG0716	FMN binding
LOR96_014125	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LOR96_014135	COG1272	protein, Hemolysin III
LOR96_014155	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LOR96_014160	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LOR96_014165	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LOR96_014170	COG0006	proline dipeptidase activity
LOR96_014180	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LOR96_014190	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LOR96_014195	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LOR96_014200	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LOR96_014215	COG1279	arginine transmembrane transporter activity
LOR96_014225	COG0191	fructose-bisphosphate aldolase activity
LOR96_014230	COG0126	phosphoglycerate kinase activity
LOR96_014235	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LOR96_014240	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LOR96_014250	COG1166	arginine decarboxylase activity
LOR96_014255	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LOR96_014270	COG0640	Transcriptional regulator
LOR96_014275	COG3091	SprT-like family
LOR96_014280	COG2356	endonuclease I
LOR96_014285	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LOR96_014290	COG0189	ligase activity
LOR96_014295	COG1678	Uncharacterized ACR, COG1678
LOR96_014300	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LOR96_014305	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LOR96_014315	COG2805	Type II/IV secretion system protein
LOR96_014320	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LOR96_014325	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LOR96_014330	COG0762	integral membrane protein
LOR96_014335	COG1872	DUF167
LOR96_014340	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LOR96_014345	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LOR96_014360	COG3171	Protein conserved in bacteria
LOR96_014370	COG1194	a g-specific adenine glycosylase
LOR96_014375	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LOR96_014380	COG0741	lytic transglycosylase activity
LOR96_014425	COG1105	Belongs to the carbohydrate kinase PfkB family
LOR96_014430	COG1882	Formate acetyltransferase
LOR96_014435	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LOR96_014440	COG0814	amino acid
LOR96_014455	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_014460	COG1535	isochorismatase
LOR96_014460	COG3433	isochorismatase activity
LOR96_014465	COG1021	2,3-dihydroxybenzoate-AMP ligase
LOR96_014470	COG1169	isochorismate synthase
LOR96_014475	COG4592	Periplasmic binding protein
LOR96_014485	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_014490	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_014495	COG1120	ATPase activity
LOR96_014505	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LOR96_014510	COG3251	PFAM MbtH domain protein
LOR96_014520	COG4774	siderophore transport
LOR96_014525	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LOR96_014550	COG4964	Belongs to the GSP D family
LOR96_014610	COG0848	biopolymer transport protein
LOR96_014615	COG0811	peptide transport
LOR96_014620	COG0626	cystathionine gamma-synthase activity
LOR96_014625	COG0586	Pfam SNARE associated Golgi protein
LOR96_014630	COG2207	Transcriptional regulator
LOR96_014635	COG1979	alcohol dehydrogenase
LOR96_014640	COG0656	L-ascorbic acid biosynthetic process
LOR96_014650	COG2132	Multicopper oxidase
LOR96_014665	COG2249	NAD(P)H dehydrogenase (quinone) activity
LOR96_014670	COG0583	DNA-binding transcription factor activity
LOR96_014675	COG0187	DNA topoisomerase II activity
LOR96_014680	COG3150	esterase
LOR96_014685	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LOR96_014690	COG3151	Protein conserved in bacteria
LOR96_014695	COG0494	nUDIX hydrolase
LOR96_014700	COG1538	Outer membrane efflux protein
LOR96_014705	COG5463	Belongs to the UPF0441 family
LOR96_014710	COG0754	glutathionylspermidine amidase activity
LOR96_014715	COG3384	dioxygenase
LOR96_014720	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LOR96_014735	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LOR96_014735	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LOR96_014745	COG3025	triphosphatase activity
LOR96_014750	COG4991	sh3 domain protein
LOR96_014755	COG0617	tRNA 3'-terminal CCA addition
LOR96_014760	COG1968	undecaprenyl-diphosphatase activity
LOR96_014765	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LOR96_014770	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LOR96_014775	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LOR96_014780	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LOR96_014785	COG0358	DNA primase activity
LOR96_014815	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_014845	COG0463	Glycosyl transferase, family 2
LOR96_014880	COG3210	domain, Protein
LOR96_014885	COG3210	domain, Protein
LOR96_014895	COG2831	hemolysin activation secretion protein
LOR96_014900	COG0446	pyridine nucleotide-disulphide oxidoreductase
LOR96_014900	COG1902	pentaerythritol trinitrate reductase activity
LOR96_014915	COG1451	nucleotide metabolic process
LOR96_014920	COG0673	inositol 2-dehydrogenase activity
LOR96_014925	COG0861	Integral membrane protein TerC family
LOR96_014930	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LOR96_014940	COG2721	sulfolactate sulfo-lyase activity
LOR96_014955	COG2271	Major facilitator Superfamily
LOR96_014970	COG0586	Pfam SNARE associated Golgi protein
LOR96_014985	COG4575	ribosome binding
LOR96_014990	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
LOR96_015000	COG2259	Doxx family
LOR96_015005	COG0583	DNA-binding transcription factor activity
LOR96_015010	COG1741	Belongs to the pirin family
LOR96_015025	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LOR96_015040	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LOR96_015045	COG2823	Periplasmic or secreted lipoprotein
LOR96_015050	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LOR96_015055	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
LOR96_015060	COG5002	protein histidine kinase activity
LOR96_015060	COG2198	Histidine kinase
LOR96_015060	COG0784	Response regulator, receiver
LOR96_015065	COG1242	4 iron, 4 sulfur cluster binding
LOR96_015070	COG0070	glutamate synthase
LOR96_015070	COG0069	glutamate synthase activity
LOR96_015070	COG0067	glutamate synthase
LOR96_015075	COG0493	'glutamate synthase
LOR96_015085	COG2969	positive regulation of protein catabolic process
LOR96_015090	COG0625	glutathione transferase activity
LOR96_015095	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LOR96_015100	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LOR96_015105	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LOR96_015110	COG3105	Protein conserved in bacteria
LOR96_015115	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LOR96_015125	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LOR96_015130	COG5007	Belongs to the BolA IbaG family
LOR96_015135	COG3113	response to antibiotic
LOR96_015140	COG2854	intermembrane phospholipid transfer
LOR96_015145	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LOR96_015150	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LOR96_015155	COG1127	ABC transporter
LOR96_015160	COG0530	calcium, potassium:sodium antiporter activity
LOR96_015165	COG0517	IMP dehydrogenase activity
LOR96_015165	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LOR96_015170	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LOR96_015175	COG3117	lipopolysaccharide transmembrane transporter activity
LOR96_015180	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LOR96_015185	COG1137	ATPase activity
LOR96_015190	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LOR96_015210	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_015215	COG0540	Belongs to the ATCase OTCase family
LOR96_015220	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LOR96_015230	COG0366	Alpha amylase catalytic
LOR96_015235	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_015235	COG1263	PTS System
LOR96_015245	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LOR96_015255	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LOR96_015260	COG3783	Cytochrome b(562)
LOR96_015265	COG0312	modulator of DNA gyrase
LOR96_015270	COG3028	Belongs to the UPF0307 family
LOR96_015275	COG2732	(Barnase) inhibitor
LOR96_015280	COG4290	ribonuclease
LOR96_015290	COG1289	transmembrane transporter activity
LOR96_015295	COG1566	PFAM secretion protein HlyD family protein
LOR96_015305	COG0583	DNA-binding transcription factor activity
LOR96_015310	COG0312	modulator of DNA gyrase
LOR96_015315	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LOR96_015320	COG3164	Protein of unknown function
LOR96_015330	COG0424	maF-like protein
LOR96_015335	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LOR96_015340	COG1792	Involved in formation and maintenance of cell shape
LOR96_015345	COG1077	Cell shape determining protein MreB Mrl
LOR96_015350	COG2199	diguanylate cyclase activity
LOR96_015350	COG2200	EAL domain
LOR96_015355	COG0604	alcohol dehydrogenase
LOR96_015360	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LOR96_015365	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
LOR96_015375	COG0511	ligase activity, forming carbon-carbon bonds
LOR96_015380	COG0439	Biotin carboxylase
LOR96_015385	COG3924	membrane
LOR96_015390	COG4145	pantothenate transmembrane transporter activity
LOR96_015395	COG2264	protein methyltransferase activity
LOR96_015400	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LOR96_015405	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LOR96_015415	COG1560	Kdo2-lipid A biosynthetic process
LOR96_015425	COG1346	cytolysis
LOR96_015430	COG1380	Effector of murein hydrolase LrgA
LOR96_015435	COG0583	DNA-binding transcription factor activity
LOR96_015440	COG0025	NhaP-type Na H and K H
LOR96_015445	COG2252	PERMEase
LOR96_015460	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LOR96_015465	COG2315	Protein conserved in bacteria
LOR96_015470	COG1448	Aminotransferase
LOR96_015495	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LOR96_015500	COG0735	belongs to the Fur family
LOR96_015505	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LOR96_015510	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LOR96_015515	COG2937	Belongs to the GPAT DAPAT family
LOR96_015535	COG4580	involved in the transport of maltose and maltodextrins
LOR96_015550	COG2182	Extracellular solute-binding protein
LOR96_015555	COG1175	transmembrane transport
LOR96_015560	COG3833	ABC-type maltose transport systems, permease component
LOR96_015565	COG3223	Belongs to the PsiE family
LOR96_015575	COG0527	aspartate kinase activity
LOR96_015590	COG3328	transposase activity
LOR96_015600	COG3328	transposase activity
LOR96_015625	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LOR96_015705	COG0583	DNA-binding transcription factor activity
LOR96_015745	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LOR96_015785	COG0138	bifunctional purine biosynthesis protein purh
LOR96_015790	COG0151	Belongs to the GarS family
LOR96_015810	COG1515	deoxyribonuclease V activity
LOR96_015815	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LOR96_015820	COG2816	NAD+ diphosphatase activity
LOR96_015825	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
LOR96_015840	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LOR96_015845	COG2104	thiamine diphosphate biosynthetic process
LOR96_015850	COG2022	thiamine diphosphate biosynthetic process
LOR96_015860	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LOR96_015865	COG0085	RNA polymerase activity
LOR96_015870	COG0222	ribosome binding
LOR96_015875	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LOR96_015885	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LOR96_015890	COG0250	Participates in transcription elongation, termination and antitermination
LOR96_015935	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LOR96_015960	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
LOR96_015965	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LOR96_015970	COG1739	Uncharacterized protein family UPF0029
LOR96_015980	COG1024	Enoyl-CoA hydratase
LOR96_015980	COG1250	3-hydroxyacyl-CoA dehydrogenase
LOR96_015990	COG0543	2 iron, 2 sulfur cluster binding
LOR96_016005	COG0250	Participates in transcription elongation, termination and antitermination
LOR96_016020	COG0805	protein transport
LOR96_016025	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LOR96_016030	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LOR96_016035	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LOR96_016040	COG3165	ubiquinone biosynthetic process from chorismate
LOR96_016045	COG2226	methyltransferase
LOR96_016050	COG1322	Protein conserved in bacteria
LOR96_016055	COG0586	Pfam SNARE associated Golgi protein
LOR96_016060	COG1966	Carbon starvation protein
LOR96_016075	COG0412	Dienelactone hydrolase
LOR96_016080	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LOR96_016085	COG0583	DNA-binding transcription factor activity
LOR96_016090	COG0697	spore germination
LOR96_016100	COG0584	glycerophosphoryl diester phosphodiesterase
LOR96_016110	COG0395	ABC-type sugar transport system, permease component
LOR96_016115	COG1175	transmembrane transport
LOR96_016120	COG1653	transport
LOR96_016155	COG0410	ABC transporter
LOR96_016165	COG4177	L-phenylalanine transmembrane transporter activity
LOR96_016185	COG1929	Belongs to the glycerate kinase type-1 family
LOR96_016190	COG2610	gluconate transmembrane transporter activity
LOR96_016195	COG3835	regulator
LOR96_016205	COG2177	Part of the ABC transporter FtsEX involved in
LOR96_016210	COG2884	Cell division ATP-binding protein ftsE
LOR96_016215	COG0552	protein localization to endoplasmic reticulum
LOR96_016215	COG0552	protein localization to endoplasmic reticulum
LOR96_016220	COG0742	ribosomal rna small subunit methyltransferase
LOR96_016225	COG3776	membrane
LOR96_016240	COG3714	YhhN family
LOR96_016255	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LOR96_016265	COG0247	lactate metabolic process
LOR96_016275	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LOR96_016285	COG2271	Major facilitator Superfamily
LOR96_016290	COG0584	glycerophosphoryl diester phosphodiesterase
LOR96_016295	COG0561	phosphatase activity
LOR96_016300	COG2267	carboxylic ester hydrolase activity
LOR96_016305	COG1280	lysine exporter protein (LysE YggA)
LOR96_016310	COG0514	ATP-dependent DNA helicase (RecQ)
LOR96_016315	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
LOR96_016320	COG2050	protein possibly involved in aromatic compounds catabolism
LOR96_016340	COG5564	TIM-barrel signal transduction protein
LOR96_016345	COG5441	Belongs to the UPF0261 family
LOR96_016355	COG0210	DNA helicase
LOR96_016360	COG1011	Hydrolase
LOR96_016365	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LOR96_016370	COG3159	Protein conserved in bacteria
LOR96_016375	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LOR96_016380	COG5567	small periplasmic lipoprotein
LOR96_016390	COG3072	Adenylate cyclase
LOR96_016395	COG0181	hydroxymethylbilane synthase activity
LOR96_016400	COG1587	Uroporphyrinogen-III synthase
LOR96_016405	COG2959	enzyme of heme biosynthesis
LOR96_016410	COG3071	HemY protein
LOR96_016460	COG2244	polysaccharide biosynthetic process
LOR96_016465	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LOR96_016470	COG0456	acetyltransferase
LOR96_016475	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LOR96_016480	COG1088	dTDP-glucose 4,6-dehydratase activity
LOR96_016485	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LOR96_016490	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LOR96_016495	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
LOR96_016500	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LOR96_016505	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LOR96_016510	COG3118	belongs to the thioredoxin family
LOR96_016520	COG0248	Ppx GppA phosphatase
LOR96_016530	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LOR96_016545	COG3397	chitin binding
LOR96_016555	COG0129	dihydroxy-acid dehydratase activity
LOR96_016565	COG3978	acetolactate synthase activity
LOR96_016585	COG3085	chromosome segregation
LOR96_016590	COG0583	DNA-binding transcription factor activity
LOR96_016665	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LOR96_016675	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LOR96_016675	COG0678	peroxiredoxin activity
LOR96_016680	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LOR96_016715	COG1629	transport
LOR96_016720	COG0165	Argininosuccinate lyase
LOR96_016725	COG0137	argininosuccinate synthase activity
LOR96_016730	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LOR96_016775	COG0460	homoserine dehydrogenase
LOR96_016775	COG0527	aspartate kinase activity
LOR96_016780	COG0626	cystathionine gamma-synthase activity
LOR96_016785	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
LOR96_016795	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LOR96_016800	COG1609	Transcriptional regulator
LOR96_016805	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LOR96_016810	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LOR96_016815	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LOR96_016820	COG1575	Belongs to the MenA family. Type 1 subfamily
LOR96_016825	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LOR96_016830	COG3074	FtsZ-dependent cytokinesis
LOR96_016835	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LOR96_016840	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LOR96_016845	COG1494	fructose-1,6-bisphosphatase
LOR96_016850	COG2814	Major facilitator Superfamily
LOR96_016860	COG3152	Membrane
LOR96_016875	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LOR96_016885	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LOR96_016890	COG3678	ATP-independent chaperone mediated protein folding
LOR96_016895	COG0745	RESPONSE REGULATOR receiver
LOR96_016900	COG2205	protein histidine kinase activity
LOR96_016905	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LOR96_016910	COG1045	serine acetyltransferase
LOR96_016915	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LOR96_016920	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LOR96_016925	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LOR96_016930	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LOR96_016935	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LOR96_016940	COG4942	peptidase
LOR96_016945	COG2861	carbohydrate metabolic process
LOR96_016960	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LOR96_016965	COG0859	PFAM glycosyl transferase family 9
LOR96_016970	COG0859	PFAM glycosyl transferase family 9
LOR96_016975	COG1519	Transferase
LOR96_016995	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LOR96_017000	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LOR96_017005	COG2003	Belongs to the UPF0758 family
LOR96_017010	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LOR96_017015	COG0756	dUTP diphosphatase activity
LOR96_017020	COG1309	transcriptional regulator
LOR96_017025	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LOR96_017030	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LOR96_017035	COG1561	YicC-like family, N-terminal region
LOR96_017050	COG5001	Diguanylate cyclase
LOR96_017055	COG1024	Enoyl-CoA hydratase
LOR96_017060	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LOR96_017070	COG2860	membrane
LOR96_017075	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LOR96_017085	COG1758	RNA polymerase activity
LOR96_017090	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LOR96_017095	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LOR96_017100	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LOR96_017105	COG0786	glutamate:sodium symporter activity
LOR96_017110	COG2233	PERMEase
LOR96_017115	COG2982	Protein involved in outer membrane biogenesis
LOR96_017120	COG0456	acetyltransferase
LOR96_017135	COG1011	Hydrolase
LOR96_017150	COG3852	Histidine kinase
LOR96_017160	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LOR96_017170	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LOR96_017175	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LOR96_017175	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LOR96_017180	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LOR96_017185	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LOR96_017190	COG3084	Protein conserved in bacteria
LOR96_017200	COG1763	Mo-molybdopterin cofactor biosynthetic process
LOR96_017225	COG2186	Transcriptional regulator
LOR96_017230	COG1609	Transcriptional regulator
LOR96_017235	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LOR96_017245	COG1172	Belongs to the binding-protein-dependent transport system permease family
LOR96_017250	COG1129	ABC transporter
LOR96_017255	COG1869	D-ribose catabolic process
LOR96_017260	COG3158	transport of potassium into the cell
LOR96_017265	COG0714	Associated with various cellular activities
LOR96_017270	COG2425	protein containing a von Willebrand factor type A (vWA) domain
LOR96_017280	COG2502	aspartate--ammonia ligase
LOR96_017285	COG1522	sequence-specific DNA binding
LOR96_017290	COG0716	FMN binding
LOR96_017295	COG0445	tRNA wobble uridine modification
LOR96_017300	COG0357	Ribosomal RNA small subunit methyltransferase G
LOR96_017305	COG3312	ion transport
LOR96_017310	COG0356	it plays a direct role in the translocation of protons across the membrane
LOR96_017320	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LOR96_017330	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LOR96_017335	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LOR96_017345	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LOR96_017360	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LOR96_017365	COG0573	inorganic phosphate transmembrane transporter activity
LOR96_017370	COG0581	inorganic phosphate transmembrane transporter activity
LOR96_017380	COG0704	Plays a role in the regulation of phosphate uptake
LOR96_017385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_017390	COG0765	amino acid transport
LOR96_017395	COG0765	amino acid transport
LOR96_017400	COG2252	PERMEase
LOR96_017405	COG0840	transmembrane signaling receptor activity
LOR96_017415	COG3121	Chaperone
LOR96_017430	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LOR96_017435	COG0706	membrane insertase activity
LOR96_017445	COG0594	ribonuclease P activity
LOR96_017450	COG0230	Belongs to the bacterial ribosomal protein bL34 family
LOR96_017510	COG1454	alcohol dehydrogenase
LOR96_017615	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LOR96_017630	COG0741	lytic transglycosylase activity
LOR96_017645	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LOR96_017685	COG1192	Involved in chromosome partitioning
LOR96_017755	COG2944	sequence-specific DNA binding
LOR96_017920	COG3423	Transcriptional regulator
LOR96_017985	COG4382	Mu-like prophage protein Gp16
LOR96_018040	COG4383	Mu-like prophage protein gp29
LOR96_018065	COG4397	Mu-like prophage major head subunit gpT
LOR96_018090	COG4386	tail sheath protein