locus-tag class description LNQ40_000005 PF00308 Bacterial dnaA protein LNQ40_000005 PF08299 Bacterial dnaA protein helix-turn-helix LNQ40_000005 PF11638 DnaA N-terminal domain LNQ40_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain LNQ40_000010 PF02767 DNA polymerase III beta subunit, central domain LNQ40_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain LNQ40_000015 PF02463 RecF/RecN/SMC N terminal domain LNQ40_000020 PF00204 DNA gyrase B LNQ40_000020 PF00986 DNA gyrase B subunit, carboxyl terminus LNQ40_000020 PF18053 DNA gyrase B subunit insert domain LNQ40_000020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_000020 PF01751 Toprim domain LNQ40_000030 PF12566 Protein of unknown function (DUF3748) LNQ40_000030 PF07676 WD40-like Beta Propeller Repeat LNQ40_000035 PF07119 Protein of unknown function (DUF1375) LNQ40_000040 PF00011 Hsp20/alpha crystallin family LNQ40_000045 PF00011 Hsp20/alpha crystallin family LNQ40_000050 PF06826 Predicted Permease Membrane Region LNQ40_000050 PF02080 TrkA-C domain LNQ40_000055 PF00155 Aminotransferase class I and II LNQ40_000060 PF13488 Glycine zipper LNQ40_000060 PF00691 OmpA family LNQ40_000080 PF03352 Methyladenine glycosylase LNQ40_000090 PF02091 Glycyl-tRNA synthetase alpha subunit LNQ40_000095 PF05746 DALR anticodon binding domain LNQ40_000095 PF02092 Glycyl-tRNA synthetase beta subunit LNQ40_000100 PF11254 Protein of unknown function (DUF3053) LNQ40_000130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ40_000130 PF02378 Phosphotransferase system, EIIC LNQ40_000130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ40_000135 PF01232 Mannitol dehydrogenase Rossmann domain LNQ40_000135 PF08125 Mannitol dehydrogenase C-terminal domain LNQ40_000140 PF05068 Mannitol repressor LNQ40_000145 PF10928 Protein of unknown function (DUF2810) LNQ40_000150 PF03475 3-alpha domain LNQ40_000150 PF03473 MOSC domain LNQ40_000155 PF00672 HAMP domain LNQ40_000155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ40_000155 PF02203 Tar ligand binding domain homologue LNQ40_000160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNQ40_000160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNQ40_000165 PF02634 FdhD/NarQ family LNQ40_000175 PF09163 Formate dehydrogenase N, transmembrane LNQ40_000175 PF13247 4Fe-4S dicluster domain LNQ40_000180 PF01292 Prokaryotic cytochrome b561 LNQ40_000185 PF04216 Protein involved in formate dehydrogenase formation LNQ40_000190 PF03841 L-seryl-tRNA selenium transferase LNQ40_000190 PF12390 Selenocysteine synthase N terminal LNQ40_000195 PF03144 Elongation factor Tu domain 2 LNQ40_000195 PF09107 Elongation factor SelB, winged helix LNQ40_000195 PF09106 Elongation factor SelB, winged helix LNQ40_000195 PF00009 Elongation factor Tu GTP binding domain LNQ40_000200 PF01427 D-ala-D-ala dipeptidase LNQ40_000205 PF07690 Major Facilitator Superfamily LNQ40_000210 PF01757 Acyltransferase family LNQ40_000220 PF14659 Phage integrase, N-terminal SAM-like domain LNQ40_000220 PF00589 Phage integrase family LNQ40_000220 PF13356 Arm DNA-binding domain LNQ40_000235 PF04606 Ogr/Delta-like zinc finger LNQ40_000260 PF01175 Urocanase Rossmann-like domain LNQ40_000260 PF17392 Urocanase C-terminal domain LNQ40_000260 PF17391 Urocanase N-terminal domain LNQ40_000265 PF00221 Aromatic amino acid lyase LNQ40_000270 PF00324 Amino acid permease LNQ40_000280 PF12146 Serine aminopeptidase, S33 LNQ40_000285 PF00884 Sulfatase LNQ40_000285 PF08019 Phosphoethanolamine transferase EptA/EptB LNQ40_000290 PF00196 Bacterial regulatory proteins, luxR family LNQ40_000290 PF00072 Response regulator receiver domain LNQ40_000295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_000295 PF07730 Histidine kinase LNQ40_000295 PF05231 MASE1 LNQ40_000300 PF07690 Major Facilitator Superfamily LNQ40_000310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ40_000315 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_000320 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_000320 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ40_000325 PF00005 ABC transporter LNQ40_000325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ40_000330 PF00005 ABC transporter LNQ40_000330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ40_000335 PF11658 Cellulose biosynthesis protein BcsG LNQ40_000340 PF11120 Cellulose biosynthesis protein BcsF LNQ40_000345 PF10995 Cellulose biosynthesis GIL LNQ40_000355 PF06564 Cellulose biosynthesis protein BcsQ LNQ40_000360 PF07238 PilZ domain LNQ40_000360 PF00535 Glycosyl transferase family 2 LNQ40_000360 PF03552 Cellulose synthase LNQ40_000365 PF03170 Bacterial cellulose synthase subunit LNQ40_000370 PF01270 Glycosyl hydrolases family 8 LNQ40_000375 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LNQ40_000380 PF00672 HAMP domain LNQ40_000380 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_000380 PF17154 Gammaproteobacterial periplasmic sensor domain LNQ40_000380 PF00563 EAL domain LNQ40_000385 PF00375 Sodium:dicarboxylate symporter family LNQ40_000390 PF00675 Insulinase (Peptidase family M16) LNQ40_000390 PF05193 Peptidase M16 inactive domain LNQ40_000395 PF00294 pfkB family carbohydrate kinase LNQ40_000400 PF01361 Tautomerase enzyme LNQ40_000405 PF00563 EAL domain LNQ40_000410 PF02611 CDP-diacylglycerol pyrophosphatase LNQ40_000415 PF03631 Virulence factor BrkB LNQ40_000420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_000420 PF03466 LysR substrate binding domain LNQ40_000425 PF00375 Sodium:dicarboxylate symporter family LNQ40_000430 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ40_000435 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_000435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ40_000440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LNQ40_000445 PF01432 Peptidase family M3 LNQ40_000450 PF04445 Putative SAM-dependent methyltransferase LNQ40_000455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LNQ40_000455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LNQ40_000460 PF00582 Universal stress protein family LNQ40_000465 PF10625 Universal stress protein B (UspB) LNQ40_000470 PF01384 Phosphate transporter family LNQ40_000480 PF01810 LysE type translocator LNQ40_000485 PF00583 Acetyltransferase (GNAT) family LNQ40_000495 PF17954 Quercetinase C-terminal cupin domain LNQ40_000495 PF02678 Pirin LNQ40_000500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ40_000500 PF00356 Bacterial regulatory proteins, lacI family LNQ40_000505 PF02447 GntP family permease LNQ40_000510 PF01202 Shikimate kinase LNQ40_000515 PF01914 MarC family integral membrane protein LNQ40_000520 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ40_000520 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ40_000525 PF07694 5TMR of 5TMR-LYT LNQ40_000525 PF06580 Histidine kinase LNQ40_000530 PF00128 Alpha amylase, catalytic domain LNQ40_000530 PF02806 Alpha amylase, C-terminal all-beta domain LNQ40_000530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNQ40_000535 PF00128 Alpha amylase, catalytic domain LNQ40_000535 PF18390 Glycogen debranching enzyme C-terminal domain LNQ40_000535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNQ40_000540 PF00483 Nucleotidyl transferase LNQ40_000545 PF08323 Starch synthase catalytic domain LNQ40_000545 PF00534 Glycosyl transferases group 1 LNQ40_000550 PF00343 Carbohydrate phosphorylase LNQ40_000555 PF01266 FAD dependent oxidoreductase LNQ40_000555 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LNQ40_000560 PF00455 DeoR C terminal sensor domain LNQ40_000560 PF08220 DeoR-like helix-turn-helix domain LNQ40_000565 PF01694 Rhomboid family LNQ40_000565 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LNQ40_000570 PF00581 Rhodanese-like domain LNQ40_000575 PF17874 MalT-like TPR region LNQ40_000575 PF00196 Bacterial regulatory proteins, luxR family LNQ40_000580 PF00343 Carbohydrate phosphorylase LNQ40_000585 PF02446 4-alpha-glucanotransferase LNQ40_000590 PF01521 Iron-sulphur cluster biosynthesis LNQ40_000590 PF01106 NifU-like domain LNQ40_000595 PF00156 Phosphoribosyl transferase domain LNQ40_000600 PF00561 alpha/beta hydrolase fold LNQ40_000610 PF09012 FeoC like transcriptional regulator LNQ40_000615 PF07670 Nucleoside recognition LNQ40_000615 PF02421 Ferrous iron transport protein B LNQ40_000615 PF17910 FeoB cytosolic helical domain LNQ40_000615 PF07664 Ferrous iron transport protein B C terminus LNQ40_000620 PF04023 FeoA domain LNQ40_000625 PF16921 Tex protein YqgF-like domain LNQ40_000625 PF09371 Tex-like protein N-terminal domain LNQ40_000625 PF00575 S1 RNA binding domain LNQ40_000625 PF17674 HHH domain LNQ40_000650 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ40_000650 PF03449 Transcription elongation factor, N-terminal LNQ40_000655 PF00072 Response regulator receiver domain LNQ40_000655 PF00486 Transcriptional regulatory protein, C terminal LNQ40_000660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_000660 PF00672 HAMP domain LNQ40_000660 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_000665 PF01293 Phosphoenolpyruvate carboxykinase LNQ40_000670 PF01430 Hsp33 protein LNQ40_000675 PF01479 S4 domain LNQ40_000680 PF13419 Haloacid dehalogenase-like hydrolase LNQ40_000685 PF07095 Intracellular growth attenuator protein IgaA LNQ40_000690 PF00293 NUDIX domain LNQ40_000695 PF00905 Penicillin binding protein transpeptidase domain LNQ40_000695 PF00912 Transglycosylase LNQ40_000695 PF17092 Penicillin-binding protein OB-like domain LNQ40_000720 PF03958 Bacterial type II/III secretion system short domain LNQ40_000720 PF00263 Bacterial type II and III secretion system protein LNQ40_000725 PF01202 Shikimate kinase LNQ40_000730 PF01761 3-dehydroquinate synthase LNQ40_000735 PF05036 Sporulation related domain LNQ40_000740 PF02086 D12 class N6 adenine-specific DNA methyltransferase LNQ40_000745 PF00834 Ribulose-phosphate 3 epimerase family LNQ40_000750 PF13419 Haloacid dehalogenase-like hydrolase LNQ40_000755 PF00579 tRNA synthetases class I (W and Y) LNQ40_000760 PF10414 Sirohaem synthase dimerisation region LNQ40_000760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ40_000760 PF14824 Sirohaem biosynthesis protein central LNQ40_000765 PF01226 Formate/nitrite transporter LNQ40_000770 PF13806 Rieske-like [2Fe-2S] domain LNQ40_000775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNQ40_000775 PF04324 BFD-like [2Fe-2S] binding domain LNQ40_000775 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_000775 PF18267 Rubredoxin NAD+ reductase C-terminal domain LNQ40_000775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNQ40_000780 PF07969 Amidohydrolase family LNQ40_000785 PF07690 Major Facilitator Superfamily LNQ40_000800 PF00356 Bacterial regulatory proteins, lacI family LNQ40_000805 PF02056 Family 4 glycosyl hydrolase LNQ40_000805 PF11975 Family 4 glycosyl hydrolase C-terminal domain LNQ40_000810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LNQ40_000815 PF00117 Glutamine amidotransferase class-I LNQ40_000820 PF00202 Aminotransferase class-III LNQ40_000825 PF12805 FUSC-like inner membrane protein yccS LNQ40_000830 PF00027 Cyclic nucleotide-binding domain LNQ40_000830 PF13545 Crp-like helix-turn-helix domain LNQ40_000835 PF02566 OsmC-like protein LNQ40_000855 PF00156 Phosphoribosyl transferase domain LNQ40_000860 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_000865 PF00485 Phosphoribulokinase / Uridine kinase family LNQ40_000870 PF06794 Uncharacterised protein family (UPF0270) LNQ40_000875 PF00561 alpha/beta hydrolase fold LNQ40_000880 PF01810 LysE type translocator LNQ40_000885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ40_000890 PF00535 Glycosyl transferase family 2 LNQ40_000895 PF12848 ABC transporter LNQ40_000895 PF00005 ABC transporter LNQ40_000900 PF02525 Flavodoxin-like fold LNQ40_000905 PF02254 TrkA-N domain LNQ40_000905 PF00999 Sodium/hydrogen exchanger family LNQ40_000910 PF09526 Probable metal-binding protein (DUF2387) LNQ40_000915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ40_000920 PF04102 SlyX LNQ40_000925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ40_000925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LNQ40_000930 PF08348 YheO-like PAS domain LNQ40_000930 PF13309 HTH domain LNQ40_000935 PF02635 DsrE/DsrF-like family LNQ40_000940 PF02635 DsrE/DsrF-like family LNQ40_000945 PF04077 DsrH like protein LNQ40_000950 PF00164 Ribosomal protein S12/S23 LNQ40_000955 PF00177 Ribosomal protein S7p/S5e LNQ40_000960 PF00009 Elongation factor Tu GTP binding domain LNQ40_000960 PF00679 Elongation factor G C-terminus LNQ40_000960 PF14492 Elongation Factor G, domain II LNQ40_000960 PF03144 Elongation factor Tu domain 2 LNQ40_000960 PF03764 Elongation factor G, domain IV LNQ40_000965 PF03143 Elongation factor Tu C-terminal domain LNQ40_000965 PF00009 Elongation factor Tu GTP binding domain LNQ40_000965 PF03144 Elongation factor Tu domain 2 LNQ40_000970 PF04324 BFD-like [2Fe-2S] binding domain LNQ40_000975 PF00210 Ferritin-like domain LNQ40_000980 PF00338 Ribosomal protein S10p/S20e LNQ40_000985 PF00297 Ribosomal protein L3 LNQ40_000990 PF00573 Ribosomal protein L4/L1 family LNQ40_000995 PF00276 Ribosomal protein L23 LNQ40_001000 PF00181 Ribosomal Proteins L2, RNA binding domain LNQ40_001000 PF03947 Ribosomal Proteins L2, C-terminal domain LNQ40_001005 PF00203 Ribosomal protein S19 LNQ40_001010 PF00237 Ribosomal protein L22p/L17e LNQ40_001015 PF07650 KH domain LNQ40_001015 PF00189 Ribosomal protein S3, C-terminal domain LNQ40_001020 PF00252 Ribosomal protein L16p/L10e LNQ40_001025 PF00831 Ribosomal L29 protein LNQ40_001030 PF00366 Ribosomal protein S17 LNQ40_001035 PF00238 Ribosomal protein L14p/L23e LNQ40_001040 PF00467 KOW motif LNQ40_001040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LNQ40_001045 PF00281 Ribosomal protein L5 LNQ40_001045 PF00673 ribosomal L5P family C-terminus LNQ40_001050 PF00253 Ribosomal protein S14p/S29e LNQ40_001055 PF00410 Ribosomal protein S8 LNQ40_001060 PF00347 Ribosomal protein L6 LNQ40_001065 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LNQ40_001070 PF00333 Ribosomal protein S5, N-terminal domain LNQ40_001070 PF03719 Ribosomal protein S5, C-terminal domain LNQ40_001075 PF00327 Ribosomal protein L30p/L7e LNQ40_001080 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LNQ40_001085 PF00344 SecY translocase LNQ40_001090 PF00444 Ribosomal protein L36 LNQ40_001095 PF00416 Ribosomal protein S13/S18 LNQ40_001100 PF00411 Ribosomal protein S11 LNQ40_001105 PF00163 Ribosomal protein S4/S9 N-terminal domain LNQ40_001105 PF01479 S4 domain LNQ40_001110 PF01000 RNA polymerase Rpb3/RpoA insert domain LNQ40_001110 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LNQ40_001110 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LNQ40_001115 PF01196 Ribosomal protein L17 LNQ40_001120 PF13411 MerR HTH family regulatory protein LNQ40_001125 PF03889 Alternative ribosome-rescue factor A LNQ40_001130 PF01741 Large-conductance mechanosensitive channel, MscL LNQ40_001135 PF02080 TrkA-C domain LNQ40_001135 PF02254 TrkA-N domain LNQ40_001140 PF01029 NusB family LNQ40_001140 PF01189 16S rRNA methyltransferase RsmB/F LNQ40_001145 PF02911 Formyl transferase, C-terminal domain LNQ40_001145 PF00551 Formyl transferase LNQ40_001150 PF01327 Polypeptide deformylase LNQ40_001155 PF02481 DNA recombination-mediator protein A LNQ40_001155 PF17782 DprA winged helix domain LNQ40_001160 PF04361 Protein of unknown function (DUF494) LNQ40_001165 PF01396 Topoisomerase DNA binding C4 zinc finger LNQ40_001170 PF01300 Telomere recombination LNQ40_001175 PF08501 Shikimate dehydrogenase substrate binding domain LNQ40_001175 PF01488 Shikimate / quinate 5-dehydrogenase LNQ40_001175 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LNQ40_001180 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ40_001210 PF00474 Sodium:solute symporter family LNQ40_001215 PF04341 Protein of unknown function, DUF485 LNQ40_001220 PF16177 Acetyl-coenzyme A synthetase N-terminus LNQ40_001220 PF00501 AMP-binding enzyme LNQ40_001220 PF13193 AMP-binding enzyme C-terminal domain LNQ40_001225 PF00375 Sodium:dicarboxylate symporter family LNQ40_001230 PF04143 Sulphur transport LNQ40_001235 PF01206 Sulfurtransferase TusA LNQ40_001240 PF02719 Polysaccharide biosynthesis protein LNQ40_001245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ40_001250 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ40_001255 PF03102 NeuB family LNQ40_001255 PF08666 SAF domain LNQ40_001265 PF00483 Nucleotidyl transferase LNQ40_001275 PF02348 Cytidylyltransferase LNQ40_001275 PF13472 GDSL-like Lipase/Acylhydrolase family LNQ40_001300 PF00795 Carbon-nitrogen hydrolase LNQ40_001300 PF02540 NAD synthase LNQ40_001305 PF00117 Glutamine amidotransferase class-I LNQ40_001310 PF00977 Histidine biosynthesis protein LNQ40_001315 PF08485 Polysaccharide biosynthesis protein C-terminal LNQ40_001315 PF02719 Polysaccharide biosynthesis protein LNQ40_001320 PF01370 NAD dependent epimerase/dehydratase family LNQ40_001325 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ40_001350 PF02683 Cytochrome C biogenesis protein transmembrane region LNQ40_001350 PF11412 Disulphide bond corrector protein DsbC LNQ40_001355 PF03091 CutA1 divalent ion tolerance protein LNQ40_001360 PF03605 Anaerobic c4-dicarboxylate membrane transporter LNQ40_001365 PF00206 Lyase LNQ40_001365 PF10415 Fumarase C C-terminus LNQ40_001370 PF04186 FxsA cytoplasmic membrane protein LNQ40_001375 PF00166 Chaperonin 10 Kd subunit LNQ40_001380 PF00118 TCP-1/cpn60 chaperonin family LNQ40_001385 PF13698 Domain of unknown function (DUF4156) LNQ40_001390 PF04055 Radical SAM superfamily LNQ40_001395 PF01132 Elongation factor P (EF-P) OB domain LNQ40_001395 PF08207 Elongation factor P (EF-P) KOW-like domain LNQ40_001395 PF09285 Elongation factor P, C-terminal LNQ40_001400 PF18416 N-acetylglucosamine binding protein domain 2 LNQ40_001400 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ40_001405 PF00196 Bacterial regulatory proteins, luxR family LNQ40_001415 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ40_001415 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ40_001420 PF00577 Outer membrane usher protein LNQ40_001420 PF13953 PapC C-terminal domain LNQ40_001420 PF13954 PapC N-terminal domain LNQ40_001425 PF00419 Fimbrial protein LNQ40_001430 PF00893 Small Multidrug Resistance protein LNQ40_001435 PF08212 Lipocalin-like domain LNQ40_001440 PF02313 Fumarate reductase subunit D LNQ40_001445 PF02300 Fumarate reductase subunit C LNQ40_001450 PF13183 4Fe-4S dicluster domain LNQ40_001450 PF13085 2Fe-2S iron-sulfur cluster binding domain LNQ40_001455 PF02910 Fumarate reductase flavoprotein C-term LNQ40_001455 PF00890 FAD binding domain LNQ40_001460 PF00152 tRNA synthetases class II (D, K and N) LNQ40_001465 PF12795 Mechanosensitive ion channel porin domain LNQ40_001465 PF12794 Mechanosensitive ion channel inner membrane domain 1 LNQ40_001465 PF00924 Mechanosensitive ion channel LNQ40_001470 PF02666 Phosphatidylserine decarboxylase LNQ40_001475 PF03193 RsgA GTPase LNQ40_001480 PF00929 Exonuclease LNQ40_001500 PF08331 Domain of unknown function (DUF1730) LNQ40_001505 PF01256 Carbohydrate kinase LNQ40_001505 PF03853 YjeF-related protein N-terminus LNQ40_001510 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LNQ40_001515 PF01520 N-acetylmuramoyl-L-alanine amidase LNQ40_001520 PF01119 DNA mismatch repair protein, C-terminal domain LNQ40_001520 PF08676 MutL C terminal dimerisation domain LNQ40_001530 PF17209 Hfq protein LNQ40_001535 PF16360 GTP-binding GTPase Middle Region LNQ40_001535 PF13167 GTP-binding GTPase N-terminal LNQ40_001535 PF01926 50S ribosome-binding GTPase LNQ40_001540 PF12221 Bacterial membrane protein N terminal LNQ40_001540 PF01145 SPFH domain / Band 7 family LNQ40_001545 PF01145 SPFH domain / Band 7 family LNQ40_001550 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LNQ40_001555 PF00709 Adenylosuccinate synthetase LNQ40_001560 PF02082 Transcriptional regulator LNQ40_001565 PF08461 Ribonuclease R winged-helix domain LNQ40_001565 PF08206 Ribonuclease B OB domain LNQ40_001565 PF17876 Cold shock domain LNQ40_001565 PF00773 RNB domain LNQ40_001565 PF00575 S1 RNA binding domain LNQ40_001570 PF00588 SpoU rRNA Methylase family LNQ40_001570 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNQ40_001590 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ40_001595 PF13953 PapC C-terminal domain LNQ40_001595 PF13954 PapC N-terminal domain LNQ40_001595 PF00577 Outer membrane usher protein LNQ40_001615 PF00326 Prolyl oligopeptidase family LNQ40_001625 PF01250 Ribosomal protein S6 LNQ40_001630 PF00436 Single-strand binding protein family LNQ40_001635 PF01084 Ribosomal protein S18 LNQ40_001640 PF03948 Ribosomal protein L9, C-terminal domain LNQ40_001640 PF01281 Ribosomal protein L9, N-terminal domain LNQ40_001645 PF04225 Opacity-associated protein A LysM-like domain LNQ40_001645 PF08525 Opacity-associated protein A N-terminal motif LNQ40_001650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ40_001650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LNQ40_001655 PF01814 Hemerythrin HHE cation binding domain LNQ40_001655 PF04405 Domain of Unknown function (DUF542) LNQ40_001660 PF02872 5'-nucleotidase, C-terminal domain LNQ40_001660 PF00149 Calcineurin-like phosphoesterase LNQ40_001665 PF00459 Inositol monophosphatase family LNQ40_001670 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LNQ40_001675 PF06526 Protein of unknown function (DUF1107) LNQ40_001680 PF00571 CBS domain LNQ40_001680 PF03471 Transporter associated domain LNQ40_001680 PF01595 Cyclin M transmembrane N-terminal domain LNQ40_001685 PF01625 Peptide methionine sulfoxide reductase LNQ40_001690 PF07244 Surface antigen variable number repeat LNQ40_001690 PF01103 Surface antigen LNQ40_001690 PF17243 POTRA domain TamA domain 1 LNQ40_001695 PF04357 TamB, inner membrane protein subunit of TAM complex LNQ40_001700 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LNQ40_001705 PF00719 Inorganic pyrophosphatase LNQ40_001710 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LNQ40_001715 PF01225 Mur ligase family, catalytic domain LNQ40_001715 PF02875 Mur ligase family, glutamate ligase domain LNQ40_001715 PF08245 Mur ligase middle domain LNQ40_001720 PF02863 Arginine repressor, C-terminal domain LNQ40_001720 PF01316 Arginine repressor, DNA binding domain LNQ40_001725 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LNQ40_001725 PF00056 lactate/malate dehydrogenase, NAD binding domain LNQ40_001730 PF13693 Winged helix-turn-helix DNA-binding LNQ40_001745 PF00348 Polyprenyl synthetase LNQ40_001750 PF00829 Ribosomal prokaryotic L21 protein LNQ40_001755 PF01016 Ribosomal L27 protein LNQ40_001760 PF00892 EamA-like transporter family LNQ40_001765 PF01926 50S ribosome-binding GTPase LNQ40_001765 PF01018 GTP1/OBG LNQ40_001770 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_001770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_001770 PF00672 HAMP domain LNQ40_001775 PF00486 Transcriptional regulatory protein, C terminal LNQ40_001775 PF00072 Response regulator receiver domain LNQ40_001780 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LNQ40_001785 PF03449 Transcription elongation factor, N-terminal LNQ40_001785 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ40_001790 PF01985 CRS1 / YhbY (CRM) domain LNQ40_001795 PF01728 FtsJ-like methyltransferase LNQ40_001800 PF17862 AAA+ lid domain LNQ40_001800 PF06480 FtsH Extracellular LNQ40_001800 PF01434 Peptidase family M41 LNQ40_001800 PF00004 ATPase family associated with various cellular activities (AAA) LNQ40_001805 PF00809 Pterin binding enzyme LNQ40_001810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNQ40_001810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNQ40_001810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNQ40_001810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNQ40_001815 PF03840 Preprotein translocase SecG subunit LNQ40_001830 PF17384 RimP C-terminal SH3 domain LNQ40_001830 PF02576 RimP N-terminal domain LNQ40_001835 PF00575 S1 RNA binding domain LNQ40_001835 PF08529 NusA N-terminal domain LNQ40_001835 PF13184 NusA-like KH domain LNQ40_001840 PF00009 Elongation factor Tu GTP binding domain LNQ40_001840 PF03144 Elongation factor Tu domain 2 LNQ40_001840 PF11987 Translation-initiation factor 2 LNQ40_001840 PF08364 Bacterial translation initiation factor IF-2 associated region LNQ40_001840 PF04760 Translation initiation factor IF-2, N-terminal region LNQ40_001845 PF02033 Ribosome-binding factor A LNQ40_001850 PF09157 Pseudouridine synthase II TruB, C-terminal LNQ40_001850 PF01509 TruB family pseudouridylate synthase (N terminal domain) LNQ40_001850 PF16198 tRNA pseudouridylate synthase B C-terminal domain LNQ40_001855 PF00312 Ribosomal protein S15 LNQ40_001860 PF00575 S1 RNA binding domain LNQ40_001860 PF03725 3' exoribonuclease family, domain 2 LNQ40_001860 PF01138 3' exoribonuclease family, domain 1 LNQ40_001860 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LNQ40_001860 PF00013 KH domain LNQ40_001865 PF07719 Tetratricopeptide repeat LNQ40_001865 PF13181 Tetratricopeptide repeat LNQ40_001870 PF00271 Helicase conserved C-terminal domain LNQ40_001870 PF00270 DEAD/DEAH box helicase LNQ40_001870 PF03880 DbpA RNA binding domain LNQ40_001870 PF12343 Cold shock protein DEAD box A LNQ40_001875 PF00296 Luciferase-like monooxygenase LNQ40_001885 PF03313 Serine dehydratase alpha chain LNQ40_001890 PF01136 Peptidase family U32 LNQ40_001895 PF01136 Peptidase family U32 LNQ40_001900 PF02036 SCP-2 sterol transfer family LNQ40_001905 PF13508 Acetyltransferase (GNAT) domain LNQ40_001910 PF01541 GIY-YIG catalytic domain LNQ40_001915 PF13520 Amino acid permease LNQ40_001920 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ40_001920 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ40_001920 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ40_001925 PF10940 Protein of unknown function (DUF2618) LNQ40_001935 PF13460 NAD(P)H-binding LNQ40_001940 PF12706 Beta-lactamase superfamily domain LNQ40_001950 PF07969 Amidohydrolase family LNQ40_001955 PF00005 ABC transporter LNQ40_001960 PF00005 ABC transporter LNQ40_001965 PF06007 Phosphonate metabolism protein PhnJ LNQ40_001970 PF05861 Bacterial phosphonate metabolism protein (PhnI) LNQ40_001975 PF05845 Bacterial phosphonate metabolism protein (PhnH) LNQ40_001980 PF06754 Phosphonate metabolism protein PhnG LNQ40_001990 PF03477 ATP cone domain LNQ40_001990 PF13597 Anaerobic ribonucleoside-triphosphate reductase LNQ40_001995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNQ40_001995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNQ40_002000 PF06877 Regulator of ribonuclease activity B LNQ40_002005 PF00583 Acetyltransferase (GNAT) family LNQ40_002010 PF08264 Anticodon-binding domain of tRNA LNQ40_002010 PF10458 Valyl tRNA synthetase tRNA binding arm LNQ40_002010 PF00133 tRNA synthetases class I (I, L, M and V) LNQ40_002015 PF04364 DNA polymerase III chi subunit, HolC LNQ40_002020 PF00883 Cytosol aminopeptidase family, catalytic domain LNQ40_002020 PF02789 Cytosol aminopeptidase family, N-terminal domain LNQ40_002025 PF03739 Lipopolysaccharide export system permease LptF/LptG LNQ40_002030 PF03739 Lipopolysaccharide export system permease LptF/LptG LNQ40_002040 PF13356 Arm DNA-binding domain LNQ40_002040 PF00589 Phage integrase family LNQ40_002045 PF04851 Type III restriction enzyme, res subunit LNQ40_002045 PF00271 Helicase conserved C-terminal domain LNQ40_002045 PF08463 EcoEI R protein C-terminal LNQ40_002045 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LNQ40_002050 PF02384 N-6 DNA Methylase LNQ40_002055 PF01420 Type I restriction modification DNA specificity domain LNQ40_002080 PF13676 TIR domain LNQ40_002095 PF04221 RelB antitoxin LNQ40_002100 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LNQ40_002175 PF01344 Kelch motif LNQ40_002180 PF06178 Oligogalacturonate-specific porin protein (KdgM) LNQ40_002185 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LNQ40_002185 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain LNQ40_002185 PF02278 Polysaccharide lyase family 8, super-sandwich domain LNQ40_002200 PF02278 Polysaccharide lyase family 8, super-sandwich domain LNQ40_002200 PF09093 Lyase, catalytic LNQ40_002200 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LNQ40_002200 PF09092 Lyase, N terminal LNQ40_002205 PF00884 Sulfatase LNQ40_002210 PF08220 DeoR-like helix-turn-helix domain LNQ40_002210 PF00455 DeoR C terminal sensor domain LNQ40_002215 PF08013 Tagatose 6 phosphate kinase LNQ40_002220 PF01380 SIS domain LNQ40_002225 PF03830 PTS system sorbose subfamily IIB component LNQ40_002230 PF03609 PTS system sorbose-specific iic component LNQ40_002235 PF03613 PTS system mannose/fructose/sorbose family IID component LNQ40_002245 PF01979 Amidohydrolase family LNQ40_002250 PF04962 KduI/IolB family LNQ40_002260 PF07470 Glycosyl Hydrolase Family 88 LNQ40_002265 PF13186 Iron-sulfur cluster-binding domain LNQ40_002265 PF04055 Radical SAM superfamily LNQ40_002270 PF00884 Sulfatase LNQ40_002280 PF01116 Fructose-bisphosphate aldolase class-II LNQ40_002290 PF10696 Protein of unknown function (DUF2501) LNQ40_002295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ40_002310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ40_002315 PF00873 AcrB/AcrD/AcrF family LNQ40_002320 PF00465 Iron-containing alcohol dehydrogenase LNQ40_002325 PF02733 Dak1 domain LNQ40_002330 PF02734 DAK2 domain LNQ40_002335 PF03610 PTS system fructose IIA component LNQ40_002335 PF00381 PTS HPr component phosphorylation site LNQ40_002335 PF00391 PEP-utilising enzyme, mobile domain LNQ40_002335 PF05524 PEP-utilising enzyme, N-terminal LNQ40_002340 PF00989 PAS fold LNQ40_002340 PF00158 Sigma-54 interaction domain LNQ40_002340 PF02954 Bacterial regulatory protein, Fis family LNQ40_002345 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_002350 PF07256 Protein of unknown function (DUF1435) LNQ40_002370 PF08468 Methyltransferase small domain N-terminal LNQ40_002370 PF05175 Methyltransferase small domain LNQ40_002375 PF03603 DNA polymerase III psi subunit LNQ40_002380 PF00583 Acetyltransferase (GNAT) family LNQ40_002385 PF16658 Class II release factor RF3, C-terminal domain LNQ40_002385 PF03144 Elongation factor Tu domain 2 LNQ40_002385 PF00009 Elongation factor Tu GTP binding domain LNQ40_002390 PF04972 BON domain LNQ40_002395 PF07043 Protein of unknown function (DUF1328) LNQ40_002400 PF01734 Patatin-like phospholipase LNQ40_002405 PF01026 TatD related DNase LNQ40_002410 PF07670 Nucleoside recognition LNQ40_002410 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ40_002410 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ40_002415 PF01791 DeoC/LacD family aldolase LNQ40_002420 PF00591 Glycosyl transferase family, a/b domain LNQ40_002420 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LNQ40_002420 PF02885 Glycosyl transferase family, helical bundle domain LNQ40_002425 PF01676 Metalloenzyme superfamily LNQ40_002430 PF01048 Phosphorylase superfamily LNQ40_002435 PF10144 Bacterial virulence factor haemolysin LNQ40_002440 PF18429 Domain of unknown function (DUF5609) LNQ40_002445 PF18073 Rubredoxin metal binding domain LNQ40_002450 PF13521 AAA domain LNQ40_002450 PF01381 Helix-turn-helix LNQ40_002455 PF12848 ABC transporter LNQ40_002455 PF00005 ABC transporter LNQ40_002470 PF00689 Cation transporting ATPase, C-terminus LNQ40_002470 PF00690 Cation transporter/ATPase, N-terminus LNQ40_002475 PF01464 Transglycosylase SLT domain LNQ40_002475 PF14718 Soluble lytic murein transglycosylase L domain LNQ40_002480 PF01371 Trp repressor protein LNQ40_002485 PF01931 Protein of unknown function DUF84 LNQ40_002490 PF00300 Histidine phosphatase superfamily (branch 1) LNQ40_002495 PF06445 GyrI-like small molecule binding domain LNQ40_002495 PF12833 Helix-turn-helix domain LNQ40_002500 PF05981 CreA protein LNQ40_002505 PF00486 Transcriptional regulatory protein, C terminal LNQ40_002505 PF00072 Response regulator receiver domain LNQ40_002515 PF08254 Threonine leader peptide LNQ40_002520 PF00742 Homoserine dehydrogenase LNQ40_002520 PF00696 Amino acid kinase family LNQ40_002520 PF01842 ACT domain LNQ40_002520 PF13840 ACT domain LNQ40_002520 PF03447 Homoserine dehydrogenase, NAD binding domain LNQ40_002525 PF00288 GHMP kinases N terminal domain LNQ40_002525 PF08544 GHMP kinases C terminal LNQ40_002530 PF14821 Threonine synthase N terminus LNQ40_002530 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_002535 PF03883 Peroxide stress protein YaaA LNQ40_002540 PF00923 Transaldolase/Fructose-6-phosphate aldolase LNQ40_002545 PF00994 Probable molybdopterin binding domain LNQ40_002550 PF07690 Major Facilitator Superfamily LNQ40_002560 PF01184 GPR1/FUN34/yaaH family LNQ40_002565 PF00012 Hsp70 protein LNQ40_002570 PF01556 DnaJ C terminal domain LNQ40_002570 PF00684 DnaJ central domain LNQ40_002570 PF00226 DnaJ domain LNQ40_002575 PF06965 Na+/H+ antiporter 1 LNQ40_002580 PF03466 LysR substrate binding domain LNQ40_002580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_002585 PF01649 Ribosomal protein S20 LNQ40_002590 PF06574 FAD synthetase LNQ40_002590 PF01687 Riboflavin kinase LNQ40_002595 PF08264 Anticodon-binding domain of tRNA LNQ40_002595 PF00133 tRNA synthetases class I (I, L, M and V) LNQ40_002595 PF06827 Zinc finger found in FPG and IleRS LNQ40_002600 PF01252 Signal peptidase (SPase) II LNQ40_002605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ40_002610 PF02401 LytB protein LNQ40_002615 PF01113 Dihydrodipicolinate reductase, N-terminus LNQ40_002615 PF05173 Dihydrodipicolinate reductase, C-terminus LNQ40_002620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LNQ40_002620 PF00117 Glutamine amidotransferase class-I LNQ40_002625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNQ40_002625 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LNQ40_002625 PF02142 MGS-like domain LNQ40_002630 PF01810 LysE type translocator LNQ40_002635 PF06738 Putative threonine/serine exporter LNQ40_002640 PF12821 Threonine/Serine exporter, ThrE LNQ40_002645 PF00186 Dihydrofolate reductase LNQ40_002655 PF00149 Calcineurin-like phosphoesterase LNQ40_002660 PF04379 ApaG domain LNQ40_002665 PF00398 Ribosomal RNA adenine dimethylase LNQ40_002670 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LNQ40_002675 PF00639 PPIC-type PPIASE domain LNQ40_002675 PF09312 SurA N-terminal domain LNQ40_002680 PF04453 LPS transport system D LNQ40_002680 PF03968 OstA-like protein LNQ40_002685 PF00226 DnaJ domain LNQ40_002685 PF05099 Tellurite resistance protein TerB LNQ40_002690 PF00849 RNA pseudouridylate synthase LNQ40_002695 PF00271 Helicase conserved C-terminal domain LNQ40_002695 PF12137 RNA polymerase recycling family C-terminal LNQ40_002695 PF00176 SNF2 family N-terminal domain LNQ40_002695 PF18339 RapA N-terminal Tudor like domain 1 LNQ40_002695 PF18337 RapA N-terminal Tudor like domain LNQ40_002700 PF03104 DNA polymerase family B, exonuclease domain LNQ40_002700 PF00136 DNA polymerase family B LNQ40_002705 PF09335 SNARE associated Golgi protein LNQ40_002710 PF00005 ABC transporter LNQ40_002715 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_002725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ40_002725 PF12793 Sugar transport-related sRNA regulator N-term LNQ40_002735 PF07690 Major Facilitator Superfamily LNQ40_002740 PF00694 Aconitase C-terminal domain LNQ40_002745 PF00330 Aconitase family (aconitate hydratase) LNQ40_002750 PF00180 Isocitrate/isopropylmalate dehydrogenase LNQ40_002755 PF00682 HMGL-like LNQ40_002755 PF08502 LeuA allosteric (dimerisation) domain LNQ40_002760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_002760 PF03466 LysR substrate binding domain LNQ40_002765 PF00501 AMP-binding enzyme LNQ40_002770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ40_002770 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ40_002770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ40_002775 PF10369 Small subunit of acetolactate synthase LNQ40_002780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ40_002780 PF00356 Bacterial regulatory proteins, lacI family LNQ40_002785 PF01797 Transposase IS200 like LNQ40_002790 PF01385 Probable transposase LNQ40_002790 PF07282 Putative transposase DNA-binding domain LNQ40_002790 PF12323 Helix-turn-helix domain LNQ40_002795 PF06610 L-alanine exporter LNQ40_002800 PF02381 MraZ protein, putative antitoxin-like LNQ40_002805 PF01795 MraW methylase family LNQ40_002810 PF04999 Cell division protein FtsL LNQ40_002815 PF03717 Penicillin-binding Protein dimerisation domain LNQ40_002815 PF00905 Penicillin binding protein transpeptidase domain LNQ40_002820 PF01225 Mur ligase family, catalytic domain LNQ40_002820 PF02875 Mur ligase family, glutamate ligase domain LNQ40_002820 PF08245 Mur ligase middle domain LNQ40_002825 PF08245 Mur ligase middle domain LNQ40_002825 PF02875 Mur ligase family, glutamate ligase domain LNQ40_002825 PF01225 Mur ligase family, catalytic domain LNQ40_002830 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LNQ40_002830 PF00953 Glycosyl transferase family 4 LNQ40_002835 PF08245 Mur ligase middle domain LNQ40_002835 PF02875 Mur ligase family, glutamate ligase domain LNQ40_002840 PF01098 Cell cycle protein LNQ40_002845 PF03033 Glycosyltransferase family 28 N-terminal domain LNQ40_002845 PF04101 Glycosyltransferase family 28 C-terminal domain LNQ40_002850 PF01225 Mur ligase family, catalytic domain LNQ40_002850 PF08245 Mur ligase middle domain LNQ40_002850 PF02875 Mur ligase family, glutamate ligase domain LNQ40_002855 PF01820 D-ala D-ala ligase N-terminus LNQ40_002855 PF07478 D-ala D-ala ligase C-terminus LNQ40_002860 PF03799 Cell division protein FtsQ LNQ40_002860 PF08478 POTRA domain, FtsQ-type LNQ40_002865 PF02491 SHS2 domain inserted in FTSA LNQ40_002870 PF12327 FtsZ family, C-terminal domain LNQ40_002870 PF00091 Tubulin/FtsZ family, GTPase domain LNQ40_002875 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LNQ40_002885 PF06558 Secretion monitor precursor protein (SecM) LNQ40_002890 PF02810 SEC-C motif LNQ40_002890 PF07517 SecA DEAD-like domain LNQ40_002890 PF07516 SecA Wing and Scaffold domain LNQ40_002890 PF01043 SecA preprotein cross-linking domain LNQ40_002895 PF00293 NUDIX domain LNQ40_002900 PF03884 DNA gyrase inhibitor YacG LNQ40_002905 PF07072 Cell division protein LNQ40_002910 PF01121 Dephospho-CoA kinase LNQ40_002915 PF00478 IMP dehydrogenase / GMP reductase domain LNQ40_002920 PF00482 Type II secretion system (T2SS), protein F LNQ40_002925 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LNQ40_002925 PF00437 Type II/IV secretion system protein LNQ40_002930 PF07963 Prokaryotic N-terminal methylation motif LNQ40_002935 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LNQ40_002935 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LNQ40_002940 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ40_002945 PF17113 Regulatory signalling modulator protein AmpE LNQ40_002950 PF00324 Amino acid permease LNQ40_002955 PF00392 Bacterial regulatory proteins, gntR family LNQ40_002955 PF07729 FCD domain LNQ40_002960 PF00456 Transketolase, thiamine diphosphate binding domain LNQ40_002960 PF17831 Pyruvate dehydrogenase E1 component middle domain LNQ40_002965 PF02817 e3 binding domain LNQ40_002965 PF00364 Biotin-requiring enzyme LNQ40_002965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNQ40_002970 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_002970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ40_002980 PF11791 Aconitate B N-terminal domain LNQ40_002980 PF06434 Aconitate hydratase 2 N-terminus LNQ40_002980 PF00330 Aconitase family (aconitate hydratase) LNQ40_002985 PF06062 Uncharacterised protein family (UPF0231) LNQ40_002990 PF00892 EamA-like transporter family LNQ40_002995 PF02675 S-adenosylmethionine decarboxylase LNQ40_003000 PF17284 Spermidine synthase tetramerisation domain LNQ40_003005 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LNQ40_003010 PF07731 Multicopper oxidase LNQ40_003010 PF07732 Multicopper oxidase LNQ40_003010 PF10518 TAT (twin-arginine translocation) pathway signal sequence LNQ40_003010 PF00394 Multicopper oxidase LNQ40_003015 PF00156 Phosphoribosyl transferase domain LNQ40_003020 PF00484 Carbonic anhydrase LNQ40_003025 PF00005 ABC transporter LNQ40_003030 PF01061 ABC-2 type transporter LNQ40_003035 PF01522 Polysaccharide deacetylase LNQ40_003040 PF02261 Aspartate decarboxylase LNQ40_003045 PF02569 Pantoate-beta-alanine ligase LNQ40_003050 PF02548 Ketopantoate hydroxymethyltransferase LNQ40_003055 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LNQ40_003060 PF12626 Polymerase A arginine-rich C-terminus LNQ40_003060 PF12627 Probable RNA and SrmB- binding site of polymerase A LNQ40_003060 PF01743 Poly A polymerase head domain LNQ40_003065 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ40_003070 PF01258 Prokaryotic dksA/traR C4-type zinc finger LNQ40_003075 PF03749 Sugar fermentation stimulation protein RE domain LNQ40_003075 PF17746 SfsA N-terminal OB domain LNQ40_003080 PF02834 LigT like Phosphoesterase LNQ40_003085 PF08482 ATP-dependent helicase C-terminal LNQ40_003085 PF00271 Helicase conserved C-terminal domain LNQ40_003085 PF00270 DEAD/DEAH box helicase LNQ40_003085 PF04408 Helicase associated domain (HA2) LNQ40_003090 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LNQ40_003090 PF00912 Transglycosylase LNQ40_003090 PF00905 Penicillin binding protein transpeptidase domain LNQ40_003090 PF14814 Bifunctional transglycosylase second domain LNQ40_003095 PF00202 Aminotransferase class-III LNQ40_003100 PF00654 Voltage gated chloride channel LNQ40_003105 PF01521 Iron-sulphur cluster biosynthesis LNQ40_003110 PF03458 UPF0126 domain LNQ40_003115 PF01497 Periplasmic binding protein LNQ40_003120 PF01048 Phosphorylase superfamily LNQ40_003125 PF13286 Phosphohydrolase-associated domain LNQ40_003125 PF01966 HD domain LNQ40_003130 PF00595 PDZ domain LNQ40_003135 PF00672 HAMP domain LNQ40_003135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_003135 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_003135 PF01627 Hpt domain LNQ40_003135 PF00072 Response regulator receiver domain LNQ40_003135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNQ40_003140 PF01938 TRAM domain LNQ40_003140 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ40_003145 PF02824 TGS domain LNQ40_003145 PF04607 Region found in RelA / SpoT proteins LNQ40_003145 PF13291 ACT domain LNQ40_003150 PF03819 MazG nucleotide pyrophosphohydrolase domain LNQ40_003155 PF06418 CTP synthase N-terminus LNQ40_003155 PF00117 Glutamine amidotransferase class-I LNQ40_003160 PF00113 Enolase, C-terminal TIM barrel domain LNQ40_003160 PF03952 Enolase, N-terminal domain LNQ40_003165 PF04055 Radical SAM superfamily LNQ40_003170 PF01242 6-pyruvoyl tetrahydropterin synthase LNQ40_003175 PF00667 FAD binding domain LNQ40_003175 PF00258 Flavodoxin LNQ40_003175 PF00175 Oxidoreductase NAD-binding domain LNQ40_003180 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNQ40_003180 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNQ40_003185 PF01507 Phosphoadenosine phosphosulfate reductase family LNQ40_003200 PF04389 Peptidase family M28 LNQ40_003205 PF14824 Sirohaem biosynthesis protein central LNQ40_003205 PF10414 Sirohaem synthase dimerisation region LNQ40_003205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ40_003210 PF01507 Phosphoadenosine phosphosulfate reductase family LNQ40_003215 PF00009 Elongation factor Tu GTP binding domain LNQ40_003225 PF12084 Protein of unknown function (DUF3561) LNQ40_003230 PF04977 Septum formation initiator LNQ40_003235 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LNQ40_003240 PF02542 YgbB family LNQ40_003245 PF01142 tRNA pseudouridine synthase D (TruD) LNQ40_003250 PF01975 Survival protein SurE LNQ40_003260 PF01551 Peptidase family M23 LNQ40_003260 PF01476 LysM domain LNQ40_003265 PF04542 Sigma-70 region 2 LNQ40_003265 PF00140 Sigma-70 factor, region 1.2 LNQ40_003265 PF04545 Sigma-70, region 4 LNQ40_003265 PF04539 Sigma-70 region 3 LNQ40_003270 PF01624 MutS domain I LNQ40_003270 PF05188 MutS domain II LNQ40_003270 PF05192 MutS domain III LNQ40_003270 PF05190 MutS family domain IV LNQ40_003270 PF00488 MutS domain V LNQ40_003305 PF13193 AMP-binding enzyme C-terminal domain LNQ40_003305 PF00550 Phosphopantetheine attachment site LNQ40_003305 PF00668 Condensation domain LNQ40_003305 PF00501 AMP-binding enzyme LNQ40_003340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_003340 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_003340 PF09308 LuxQ, periplasmic LNQ40_003340 PF00072 Response regulator receiver domain LNQ40_003345 PF00072 Response regulator receiver domain LNQ40_003345 PF00196 Bacterial regulatory proteins, luxR family LNQ40_003360 PF01464 Transglycosylase SLT domain LNQ40_003380 PF01514 Secretory protein of YscJ/FliF family LNQ40_003400 PF12833 Helix-turn-helix domain LNQ40_003405 PF03958 Bacterial type II/III secretion system short domain LNQ40_003405 PF00263 Bacterial type II and III secretion system protein LNQ40_003410 PF07201 HrpJ-like domain LNQ40_003415 PF00771 FHIPEP family LNQ40_003425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ40_003425 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ40_003425 PF18269 T3SS EscN ATPase C-terminal domain LNQ40_003440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ40_003445 PF00813 FliP family LNQ40_003450 PF01313 Bacterial export proteins, family 3 LNQ40_003455 PF01311 Bacterial export proteins, family 1 LNQ40_003460 PF01312 FlhB HrpN YscU SpaS Family LNQ40_003465 PF07720 Tetratricopeptide repeat LNQ40_003490 PF00550 Phosphopantetheine attachment site LNQ40_003510 PF18416 N-acetylglucosamine binding protein domain 2 LNQ40_003510 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ40_003515 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LNQ40_003520 PF06750 Bacterial Peptidase A24 N-terminal domain LNQ40_003520 PF01478 Type IV leader peptidase family LNQ40_003530 PF12693 GspL periplasmic domain LNQ40_003530 PF05134 Type II secretion system (T2SS), protein L LNQ40_003535 PF03934 Type II secretion system (T2SS), protein K LNQ40_003540 PF07963 Prokaryotic N-terminal methylation motif LNQ40_003540 PF11612 Type II secretion system (T2SS), protein J LNQ40_003545 PF07963 Prokaryotic N-terminal methylation motif LNQ40_003545 PF02501 Type II secretion system (T2SS), protein I LNQ40_003555 PF07963 Prokaryotic N-terminal methylation motif LNQ40_003555 PF08334 Type II secretion system (T2SS), protein G LNQ40_003560 PF00482 Type II secretion system (T2SS), protein F LNQ40_003565 PF00437 Type II/IV secretion system protein LNQ40_003570 PF00263 Bacterial type II and III secretion system protein LNQ40_003570 PF03958 Bacterial type II/III secretion system short domain LNQ40_003575 PF11356 Type II secretion system protein C LNQ40_003600 PF05683 Fumarase C-terminus LNQ40_003600 PF05681 Fumarate hydratase (Fumerase) LNQ40_003605 PF07690 Major Facilitator Superfamily LNQ40_003610 PF02464 Competence-damaged protein LNQ40_003615 PF00154 recA bacterial DNA recombination protein LNQ40_003620 PF02631 RecX family LNQ40_003625 PF02272 DHHA1 domain LNQ40_003625 PF01411 tRNA synthetases class II (A) LNQ40_003625 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ40_003630 PF02599 Global regulator protein family LNQ40_003660 PF01411 tRNA synthetases class II (A) LNQ40_003660 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ40_003665 PF13419 Haloacid dehalogenase-like hydrolase LNQ40_003670 PF09335 SNARE associated Golgi protein LNQ40_003675 PF04262 Glutamate-cysteine ligase LNQ40_003680 PF02664 S-Ribosylhomocysteinase (LuxS) LNQ40_003685 PF01595 Cyclin M transmembrane N-terminal domain LNQ40_003685 PF03471 Transporter associated domain LNQ40_003685 PF00571 CBS domain LNQ40_003690 PF01578 Cytochrome C assembly protein LNQ40_003695 PF02978 Signal peptide binding domain LNQ40_003695 PF02881 SRP54-type protein, helical bundle domain LNQ40_003695 PF00448 SRP54-type protein, GTPase domain LNQ40_003700 PF00886 Ribosomal protein S16 LNQ40_003705 PF05239 PRC-barrel domain LNQ40_003705 PF01782 RimM N-terminal domain LNQ40_003710 PF01746 tRNA (Guanine-1)-methyltransferase LNQ40_003715 PF01245 Ribosomal protein L19 LNQ40_003720 PF04338 Protein of unknown function, DUF481 LNQ40_003725 PF03605 Anaerobic c4-dicarboxylate membrane transporter LNQ40_003730 PF00072 Response regulator receiver domain LNQ40_003730 PF04397 LytTr DNA-binding domain LNQ40_003735 PF00793 DAHP synthetase I family LNQ40_003740 PF01817 Chorismate mutase type II LNQ40_003740 PF02153 Prephenate dehydrogenase LNQ40_003745 PF01817 Chorismate mutase type II LNQ40_003745 PF00800 Prephenate dehydratase LNQ40_003755 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LNQ40_003760 PF13525 Outer membrane lipoprotein LNQ40_003765 PF00849 RNA pseudouridylate synthase LNQ40_003765 PF01479 S4 domain LNQ40_003770 PF02578 Multi-copper polyphenol oxidoreductase laccase LNQ40_003775 PF07724 AAA domain (Cdc48 subfamily) LNQ40_003775 PF17871 AAA lid domain LNQ40_003775 PF02861 Clp amino terminal domain, pathogenicity island component LNQ40_003775 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ40_003775 PF00004 ATPase family associated with various cellular activities (AAA) LNQ40_003810 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ40_003815 PF01476 LysM domain LNQ40_003815 PF01464 Transglycosylase SLT domain LNQ40_003820 PF16123 Hydroxyacylglutathione hydrolase C-terminus LNQ40_003820 PF00753 Metallo-beta-lactamase superfamily LNQ40_003825 PF08241 Methyltransferase domain LNQ40_003830 PF00075 RNase H LNQ40_003835 PF00929 Exonuclease LNQ40_003845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNQ40_003845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNQ40_003845 PF09317 Domain of unknown function (DUF1974) LNQ40_003850 PF13580 SIS domain LNQ40_003855 PF13230 Glutamine amidotransferases class-II LNQ40_003860 PF03734 L,D-transpeptidase catalytic domain LNQ40_003865 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LNQ40_003865 PF11973 NQRA C-terminal domain LNQ40_003870 PF03116 NQR2, RnfD, RnfE family LNQ40_003875 PF04205 FMN-binding domain LNQ40_003880 PF02508 Rnf-Nqr subunit, membrane protein LNQ40_003885 PF02508 Rnf-Nqr subunit, membrane protein LNQ40_003890 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ40_003890 PF00175 Oxidoreductase NAD-binding domain LNQ40_003890 PF00970 Oxidoreductase FAD-binding domain LNQ40_003895 PF02424 ApbE family LNQ40_003900 PF04400 (Na+)-NQR maturation NqrM LNQ40_003905 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ40_003910 PF00817 impB/mucB/samB family LNQ40_003910 PF11799 impB/mucB/samB family C-terminal domain LNQ40_003910 PF11798 IMS family HHH motif LNQ40_003915 PF07687 Peptidase dimerisation domain LNQ40_003915 PF01546 Peptidase family M20/M25/M40 LNQ40_003920 PF00156 Phosphoribosyl transferase domain LNQ40_003925 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LNQ40_003930 PF07417 Sigma factor-binding transcriptional regulator Crl LNQ40_003935 PF00696 Amino acid kinase family LNQ40_003935 PF01472 PUA domain LNQ40_003940 PF00171 Aldehyde dehydrogenase family LNQ40_003945 PF07238 PilZ domain LNQ40_003945 PF07317 Flagellar regulator YcgR LNQ40_003970 PF07715 TonB-dependent Receptor Plug Domain LNQ40_003970 PF00593 TonB dependent receptor LNQ40_003975 PF01202 Shikimate kinase LNQ40_003995 PF07302 AroM protein LNQ40_004000 PF06865 Pyrimidine/purine nucleoside phosphorylase LNQ40_004005 PF04381 Putative exonuclease, RdgC LNQ40_004010 PF00480 ROK family LNQ40_004015 PF13476 AAA domain LNQ40_004020 PF00149 Calcineurin-like phosphoesterase LNQ40_004020 PF12320 Type 5 capsule protein repressor C-terminal domain LNQ40_004025 PF00072 Response regulator receiver domain LNQ40_004025 PF00486 Transcriptional regulatory protein, C terminal LNQ40_004030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_004030 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_004030 PF00989 PAS fold LNQ40_004030 PF11808 Phosphate regulon sensor protein PhoR LNQ40_004035 PF12849 PBP superfamily domain LNQ40_004040 PF05525 Branched-chain amino acid transport protein LNQ40_004045 PF00324 Amino acid permease LNQ40_004050 PF02903 Alpha amylase, N-terminal ig-like domain LNQ40_004050 PF00128 Alpha amylase, catalytic domain LNQ40_004060 PF10417 C-terminal domain of 1-Cys peroxiredoxin LNQ40_004060 PF00578 AhpC/TSA family LNQ40_004065 PF04336 Acyl carrier protein phosphodiesterase LNQ40_004070 PF02547 Queuosine biosynthesis protein LNQ40_004075 PF01702 Queuine tRNA-ribosyltransferase LNQ40_004080 PF02699 Preprotein translocase subunit LNQ40_004085 PF02355 Protein export membrane protein LNQ40_004085 PF07549 SecD/SecF GG Motif LNQ40_004085 PF13721 SecD export protein N-terminal TM region LNQ40_004090 PF07549 SecD/SecF GG Motif LNQ40_004090 PF02355 Protein export membrane protein LNQ40_004095 PF03477 ATP cone domain LNQ40_004100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ40_004100 PF01872 RibD C-terminal domain LNQ40_004105 PF00885 6,7-dimethyl-8-ribityllumazine synthase LNQ40_004110 PF01029 NusB family LNQ40_004115 PF02769 AIR synthase related protein, C-terminal domain LNQ40_004115 PF00586 AIR synthase related protein, N-terminal domain LNQ40_004120 PF04608 Phosphatidylglycerophosphatase A LNQ40_004125 PF02779 Transketolase, pyrimidine binding domain LNQ40_004125 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LNQ40_004125 PF02780 Transketolase, C-terminal domain LNQ40_004130 PF00348 Polyprenyl synthetase LNQ40_004135 PF02609 Exonuclease VII small subunit LNQ40_004140 PF02568 Thiamine biosynthesis protein (ThiI) LNQ40_004140 PF02926 THUMP domain LNQ40_004145 PF14532 Sigma-54 interaction domain LNQ40_004145 PF02954 Bacterial regulatory protein, Fis family LNQ40_004145 PF00072 Response regulator receiver domain LNQ40_004150 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_004150 PF00672 HAMP domain LNQ40_004150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_004160 PF07690 Major Facilitator Superfamily LNQ40_004165 PF01965 DJ-1/PfpI family LNQ40_004170 PF08546 Ketopantoate reductase PanE/ApbA C terminal LNQ40_004170 PF02558 Ketopantoate reductase PanE/ApbA LNQ40_004175 PF04461 Protein of unknown function (DUF520) LNQ40_004180 PF07690 Major Facilitator Superfamily LNQ40_004185 PF01040 UbiA prenyltransferase family LNQ40_004190 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LNQ40_004195 PF00510 Cytochrome c oxidase subunit III LNQ40_004200 PF00115 Cytochrome C and Quinol oxidase polypeptide I LNQ40_004205 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LNQ40_004205 PF06481 COX Aromatic Rich Motif LNQ40_004210 PF03502 Nucleoside-specific channel-forming protein, Tsx LNQ40_004215 PF07690 Major Facilitator Superfamily LNQ40_004220 PF03923 Uncharacterized lipoprotein LNQ40_004220 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LNQ40_004225 PF01722 BolA-like protein LNQ40_004230 PF05698 Bacterial trigger factor protein (TF) C-terminus LNQ40_004230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ40_004230 PF05697 Bacterial trigger factor protein (TF) LNQ40_004235 PF00574 Clp protease LNQ40_004240 PF07724 AAA domain (Cdc48 subfamily) LNQ40_004240 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ40_004240 PF06689 ClpX C4-type zinc finger LNQ40_004245 PF00004 ATPase family associated with various cellular activities (AAA) LNQ40_004245 PF05362 Lon protease (S16) C-terminal proteolytic domain LNQ40_004245 PF02190 ATP-dependent protease La (LON) substrate-binding domain LNQ40_004250 PF00216 Bacterial DNA-binding protein LNQ40_004255 PF13145 PPIC-type PPIASE domain LNQ40_004270 PF06508 Queuosine biosynthesis protein QueC LNQ40_004275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ40_004275 PF12793 Sugar transport-related sRNA regulator N-term LNQ40_004290 PF01037 Lrp/AsnC ligand binding domain LNQ40_004290 PF13404 AsnC-type helix-turn-helix domain LNQ40_004295 PF00005 ABC transporter LNQ40_004295 PF00664 ABC transporter transmembrane region LNQ40_004300 PF00005 ABC transporter LNQ40_004300 PF00664 ABC transporter transmembrane region LNQ40_004305 PF00543 Nitrogen regulatory protein P-II LNQ40_004310 PF00909 Ammonium Transporter Family LNQ40_004320 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LNQ40_004330 PF05321 Haemolysin expression modulating protein LNQ40_004335 PF10757 Biofilm formation regulator YbaJ LNQ40_004345 PF00444 Ribosomal protein L36 LNQ40_004350 PF01197 Ribosomal protein L31 LNQ40_004355 PF00873 AcrB/AcrD/AcrF family LNQ40_004360 PF00529 HlyD membrane-fusion protein of T1SS LNQ40_004360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ40_004365 PF08361 MAATS-type transcriptional repressor, C-terminal region LNQ40_004365 PF00440 Bacterial regulatory proteins, tetR family LNQ40_004370 PF02635 DsrE/DsrF-like family LNQ40_004375 PF00924 Mechanosensitive ion channel LNQ40_004375 PF12795 Mechanosensitive ion channel porin domain LNQ40_004375 PF12794 Mechanosensitive ion channel inner membrane domain 1 LNQ40_004380 PF10689 Protein of unknown function (DUF2496) LNQ40_004390 PF04304 Protein of unknown function (DUF454) LNQ40_004395 PF00156 Phosphoribosyl transferase domain LNQ40_004400 PF01970 Tripartite tricarboxylate transporter TctA family LNQ40_004415 PF00072 Response regulator receiver domain LNQ40_004415 PF00486 Transcriptional regulatory protein, C terminal LNQ40_004420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_004420 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_004425 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LNQ40_004425 PF12170 DNA polymerase III tau subunit V interacting with alpha LNQ40_004425 PF12169 DNA polymerase III subunits gamma and tau domain III LNQ40_004430 PF02575 YbaB/EbfC DNA-binding family LNQ40_004435 PF13662 Toprim domain LNQ40_004435 PF02132 RecR protein LNQ40_004440 PF00183 Hsp90 protein LNQ40_004440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_004445 PF05191 Adenylate kinase, active site lid LNQ40_004450 PF00762 Ferrochelatase LNQ40_004455 PF02706 Chain length determinant protein LNQ40_004460 PF00294 pfkB family carbohydrate kinase LNQ40_004465 PF00999 Sodium/hydrogen exchanger family LNQ40_004465 PF02254 TrkA-N domain LNQ40_004470 PF00149 Calcineurin-like phosphoesterase LNQ40_004470 PF02872 5'-nucleotidase, C-terminal domain LNQ40_004475 PF04073 Aminoacyl-tRNA editing domain LNQ40_004480 PF01963 TraB family LNQ40_004485 PF00403 Heavy-metal-associated domain LNQ40_004490 PF13411 MerR HTH family regulatory protein LNQ40_004495 PF01957 NfeD-like C-terminal, partner-binding LNQ40_004500 PF16200 C-terminal region of band_7 LNQ40_004500 PF01145 SPFH domain / Band 7 family LNQ40_004505 PF00085 Thioredoxin LNQ40_004510 PF00106 short chain dehydrogenase LNQ40_004515 PF13472 GDSL-like Lipase/Acylhydrolase family LNQ40_004520 PF00005 ABC transporter LNQ40_004530 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LNQ40_004530 PF02222 ATP-grasp domain LNQ40_004535 PF00731 AIR carboxylase LNQ40_004540 PF00149 Calcineurin-like phosphoesterase LNQ40_004545 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LNQ40_004550 PF01406 tRNA synthetases class I (C) catalytic domain LNQ40_004550 PF09190 DALR domain LNQ40_004565 PF00419 Fimbrial protein LNQ40_004570 PF13954 PapC N-terminal domain LNQ40_004570 PF13953 PapC C-terminal domain LNQ40_004570 PF00577 Outer membrane usher protein LNQ40_004575 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ40_004575 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ40_004610 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LNQ40_004610 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LNQ40_004620 PF01022 Bacterial regulatory protein, arsR family LNQ40_004625 PF02040 Arsenical pump membrane protein LNQ40_004630 PF03960 ArsC family LNQ40_004640 PF00501 AMP-binding enzyme LNQ40_004665 PF01292 Prokaryotic cytochrome b561 LNQ40_004675 PF00343 Carbohydrate phosphorylase LNQ40_004685 PF00486 Transcriptional regulatory protein, C terminal LNQ40_004685 PF00072 Response regulator receiver domain LNQ40_004695 PF00483 Nucleotidyl transferase LNQ40_004705 PF07238 PilZ domain LNQ40_004705 PF03552 Cellulose synthase LNQ40_004705 PF00535 Glycosyl transferase family 2 LNQ40_004725 PF16355 Domain of unknown function (DUF4982) LNQ40_004725 PF00703 Glycosyl hydrolases family 2 LNQ40_004725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LNQ40_004725 PF02837 Glycosyl hydrolases family 2, sugar binding domain LNQ40_004730 PF00072 Response regulator receiver domain LNQ40_004730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNQ40_004730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_004730 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_004730 PF01627 Hpt domain LNQ40_004730 PF00672 HAMP domain LNQ40_004735 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_004735 PF00072 Response regulator receiver domain LNQ40_004740 PF00440 Bacterial regulatory proteins, tetR family LNQ40_004770 PF00196 Bacterial regulatory proteins, luxR family LNQ40_004775 PF00313 'Cold-shock' DNA-binding domain LNQ40_004780 PF00313 'Cold-shock' DNA-binding domain LNQ40_004785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LNQ40_004795 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_004795 PF05230 MASE2 domain LNQ40_004800 PF02416 mttA/Hcf106 family LNQ40_004805 PF04055 Radical SAM superfamily LNQ40_004805 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LNQ40_004810 PF03099 Biotin/lipoate A/B protein ligase family LNQ40_004815 PF04359 Protein of unknown function (DUF493) LNQ40_004820 PF07943 Penicillin-binding protein 5, C-terminal domain LNQ40_004820 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ40_004825 PF05036 Sporulation related domain LNQ40_004825 PF03330 Lytic transglycolase LNQ40_004830 PF01098 Cell cycle protein LNQ40_004835 PF00905 Penicillin binding protein transpeptidase domain LNQ40_004835 PF03717 Penicillin-binding Protein dimerisation domain LNQ40_004840 PF02590 Predicted SPOUT methyltransferase LNQ40_004850 PF00589 Phage integrase family LNQ40_004850 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LNQ40_004940 PF01381 Helix-turn-helix LNQ40_004940 PF00717 Peptidase S24-like LNQ40_004965 PF00772 DnaB-like helicase N terminal domain LNQ40_004965 PF03796 DnaB-like helicase C terminal domain LNQ40_005010 PF03245 Bacteriophage Rz lysis protein LNQ40_005015 PF10549 ORF11CD3 domain LNQ40_005015 PF09669 Phage regulatory protein Rha (Phage_pRha) LNQ40_005040 PF06381 Protein of unknown function (DUF1073) LNQ40_005045 PF04233 Phage Mu protein F like protein LNQ40_005120 PF03869 Arc-like DNA binding domain LNQ40_005175 PF07484 Phage Tail Collar Domain LNQ40_005175 PF08400 Prophage tail fibre N-terminal LNQ40_005175 PF03335 Phage tail fibre repeat LNQ40_005180 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ40_005185 PF01467 Cytidylyltransferase-like LNQ40_005190 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LNQ40_005190 PF06144 DNA polymerase III, delta subunit LNQ40_005195 PF04390 Lipopolysaccharide-assembly LNQ40_005200 PF08264 Anticodon-binding domain of tRNA LNQ40_005200 PF00133 tRNA synthetases class I (I, L, M and V) LNQ40_005200 PF13603 Leucyl-tRNA synthetase, Domain 2 LNQ40_005205 PF07295 Zinc-ribbon containing domain LNQ40_005210 PF00005 ABC transporter LNQ40_005215 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_005220 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_005225 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_005230 PF00795 Carbon-nitrogen hydrolase LNQ40_005235 PF03471 Transporter associated domain LNQ40_005235 PF00571 CBS domain LNQ40_005240 PF02130 Uncharacterized protein family UPF0054 LNQ40_005245 PF02562 PhoH-like protein LNQ40_005250 PF01938 TRAM domain LNQ40_005250 PF04055 Radical SAM superfamily LNQ40_005250 PF00919 Uncharacterized protein family UPF0004 LNQ40_005255 PF01494 FAD binding domain LNQ40_005290 PF00733 Asparagine synthase LNQ40_005290 PF13537 Glutamine amidotransferase domain LNQ40_005295 PF13344 Haloacid dehalogenase-like hydrolase LNQ40_005300 PF01047 MarR family LNQ40_005300 PF00480 ROK family LNQ40_005305 PF01979 Amidohydrolase family LNQ40_005310 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LNQ40_005315 PF00367 phosphotransferase system, EIIB LNQ40_005315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LNQ40_005315 PF02378 Phosphotransferase system, EIIC LNQ40_005320 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ40_005320 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LNQ40_005325 PF03573 outer membrane porin, OprD family LNQ40_005330 PF13982 YbfN-like lipoprotein LNQ40_005335 PF00728 Glycosyl hydrolase family 20, catalytic domain LNQ40_005335 PF03173 Putative carbohydrate binding domain LNQ40_005335 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LNQ40_005335 PF02838 Glycosyl hydrolase family 20, domain 2 LNQ40_005340 PF07282 Putative transposase DNA-binding domain LNQ40_005340 PF01385 Probable transposase LNQ40_005340 PF12323 Helix-turn-helix domain LNQ40_005345 PF01797 Transposase IS200 like LNQ40_005350 PF01475 Ferric uptake regulator family LNQ40_005355 PF00258 Flavodoxin LNQ40_005360 PF00672 HAMP domain LNQ40_005360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ40_005360 PF02203 Tar ligand binding domain homologue LNQ40_005365 PF01402 Ribbon-helix-helix protein, copG family LNQ40_005370 PF12697 Alpha/beta hydrolase family LNQ40_005375 PF17206 SeqA protein N-terminal domain LNQ40_005375 PF03925 SeqA protein C-terminal domain LNQ40_005380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNQ40_005380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNQ40_005380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNQ40_005380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNQ40_005390 PF00486 Transcriptional regulatory protein, C terminal LNQ40_005390 PF00072 Response regulator receiver domain LNQ40_005395 PF13493 Domain of unknown function (DUF4118) LNQ40_005395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_005395 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_005395 PF02702 Osmosensitive K+ channel His kinase sensor domain LNQ40_005395 PF13492 GAF domain LNQ40_005400 PF02669 K+-transporting ATPase, c chain LNQ40_005410 PF03814 Potassium-transporting ATPase A subunit LNQ40_005415 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) LNQ40_005420 PF10725 Protein of unknown function (DUF2517) LNQ40_005425 PF08349 Protein of unknown function (DUF1722) LNQ40_005430 PF00875 DNA photolyase LNQ40_005430 PF03441 FAD binding domain of DNA photolyase LNQ40_005435 PF02112 cAMP phosphodiesterases class-II LNQ40_005440 PF01784 NIF3 (NGG1p interacting factor 3) LNQ40_005445 PF02682 Carboxyltransferase domain, subdomain C and D LNQ40_005450 PF02626 Carboxyltransferase domain, subdomain A and B LNQ40_005455 PF03746 LamB/YcsF family LNQ40_005470 PF01470 Pyroglutamyl peptidase LNQ40_005480 PF00285 Citrate synthase, C-terminal domain LNQ40_005485 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LNQ40_005490 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LNQ40_005495 PF00890 FAD binding domain LNQ40_005495 PF02910 Fumarate reductase flavoprotein C-term LNQ40_005500 PF13085 2Fe-2S iron-sulfur cluster binding domain LNQ40_005505 PF02779 Transketolase, pyrimidine binding domain LNQ40_005505 PF00676 Dehydrogenase E1 component LNQ40_005505 PF16078 2-oxoglutarate dehydrogenase N-terminus LNQ40_005505 PF16870 2-oxoglutarate dehydrogenase C-terminal LNQ40_005510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNQ40_005510 PF00364 Biotin-requiring enzyme LNQ40_005510 PF02817 e3 binding domain LNQ40_005515 PF08442 ATP-grasp domain LNQ40_005515 PF00549 CoA-ligase LNQ40_005520 PF02629 CoA binding domain LNQ40_005520 PF00549 CoA-ligase LNQ40_005525 PF00149 Calcineurin-like phosphoesterase LNQ40_005525 PF02872 5'-nucleotidase, C-terminal domain LNQ40_005530 PF01654 Cytochrome bd terminal oxidase subunit I LNQ40_005535 PF02322 Cytochrome bd terminal oxidase subunit II LNQ40_005540 PF08173 Membrane bound YbgT-like protein LNQ40_005545 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LNQ40_005550 PF03061 Thioesterase superfamily LNQ40_005555 PF01618 MotA/TolQ/ExbB proton channel family LNQ40_005560 PF02472 Biopolymer transport protein ExbD/TolR LNQ40_005565 PF06519 TolA C-terminal LNQ40_005565 PF06519 TolA C-terminal LNQ40_005570 PF07676 WD40-like Beta Propeller Repeat LNQ40_005570 PF04052 TolB amino-terminal domain LNQ40_005575 PF00691 OmpA family LNQ40_005580 PF16331 TolA binding protein trimerisation LNQ40_005580 PF13174 Tetratricopeptide repeat LNQ40_005610 PF02445 Quinolinate synthetase A protein LNQ40_005615 PF04973 Nicotinamide mononucleotide transporter LNQ40_005620 PF00072 Response regulator receiver domain LNQ40_005620 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_005620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_005620 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_005620 PF01627 Hpt domain LNQ40_005620 PF00989 PAS fold LNQ40_005625 PF00196 Bacterial regulatory proteins, luxR family LNQ40_005625 PF00072 Response regulator receiver domain LNQ40_005630 PF00793 DAHP synthetase I family LNQ40_005635 PF00300 Histidine phosphatase superfamily (branch 1) LNQ40_005645 PF01263 Aldose 1-epimerase LNQ40_005650 PF10509 Galactokinase galactose-binding signature LNQ40_005650 PF08544 GHMP kinases C terminal LNQ40_005650 PF00288 GHMP kinases N terminal domain LNQ40_005655 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LNQ40_005655 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LNQ40_005660 PF16363 GDP-mannose 4,6 dehydratase LNQ40_005675 PF03459 TOBE domain LNQ40_005675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_005680 PF10766 Multidrug efflux pump-associated protein AcrZ LNQ40_005690 PF13356 Arm DNA-binding domain LNQ40_005690 PF00589 Phage integrase family LNQ40_005760 PF00717 Peptidase S24-like LNQ40_005760 PF01381 Helix-turn-helix LNQ40_005820 PF03245 Bacteriophage Rz lysis protein LNQ40_005860 PF01343 Peptidase family S49 LNQ40_005900 PF17482 Phage tail sheath C-terminal domain LNQ40_005900 PF04984 Phage tail sheath protein subtilisin-like domain LNQ40_005940 PF04865 Baseplate J-like protein LNQ40_005955 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ40_005960 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ40_005970 PF02796 Helix-turn-helix domain of resolvase LNQ40_005970 PF00239 Resolvase, N terminal domain LNQ40_005985 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_005990 PF00005 ABC transporter LNQ40_005990 PF03459 TOBE domain LNQ40_006000 PF10282 Lactonase, 7-bladed beta-propeller LNQ40_006005 PF00202 Aminotransferase class-III LNQ40_006010 PF06968 Biotin and Thiamin Synthesis associated domain LNQ40_006010 PF04055 Radical SAM superfamily LNQ40_006015 PF00155 Aminotransferase class I and II LNQ40_006020 PF08241 Methyltransferase domain LNQ40_006030 PF00005 ABC transporter LNQ40_006035 PF04851 Type III restriction enzyme, res subunit LNQ40_006035 PF12344 Ultra-violet resistance protein B LNQ40_006035 PF02151 UvrB/uvrC motif LNQ40_006035 PF17757 UvrB interaction domain LNQ40_006035 PF00271 Helicase conserved C-terminal domain LNQ40_006040 PF09905 DNA-binding protein VF530 LNQ40_006055 PF01032 FecCD transport family LNQ40_006060 PF00005 ABC transporter LNQ40_006065 PF01933 Uncharacterised protein family UPF0052 LNQ40_006070 PF06463 Molybdenum Cofactor Synthesis C LNQ40_006070 PF04055 Radical SAM superfamily LNQ40_006075 PF01967 MoaC family LNQ40_006080 PF02597 ThiS family LNQ40_006085 PF02391 MoaE protein LNQ40_006090 PF01027 Inhibitor of apoptosis-promoting Bax1 LNQ40_006105 PF00005 ABC transporter LNQ40_006110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ40_006115 PF00440 Bacterial regulatory proteins, tetR family LNQ40_006115 PF09209 Tetracyclin repressor-like, C-terminal domain LNQ40_006120 PF00271 Helicase conserved C-terminal domain LNQ40_006120 PF00270 DEAD/DEAH box helicase LNQ40_006125 PF01207 Dihydrouridine synthase (Dus) LNQ40_006135 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ40_006140 PF01565 FAD binding domain LNQ40_006140 PF09330 D-lactate dehydrogenase, membrane binding LNQ40_006145 PF01928 CYTH domain LNQ40_006150 PF01844 HNH endonuclease LNQ40_006160 PF04226 Transglycosylase associated protein LNQ40_006165 PF00005 ABC transporter LNQ40_006175 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006180 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006185 PF07308 Protein of unknown function (DUF1456) LNQ40_006190 PF00581 Rhodanese-like domain LNQ40_006195 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LNQ40_006200 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006205 PF00005 ABC transporter LNQ40_006210 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006215 PF13520 Amino acid permease LNQ40_006220 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ40_006220 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ40_006220 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ40_006230 PF00892 EamA-like transporter family LNQ40_006235 PF00267 Gram-negative porin LNQ40_006240 PF06733 DEAD_2 LNQ40_006240 PF13307 Helicase C-terminal domain LNQ40_006245 PF02885 Glycosyl transferase family, helical bundle domain LNQ40_006250 PF05971 RNA methyltransferase LNQ40_006255 PF00005 ABC transporter LNQ40_006260 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006265 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_006270 PF00210 Ferritin-like domain LNQ40_006275 PF13649 Methyltransferase domain LNQ40_006280 PF00892 EamA-like transporter family LNQ40_006285 PF13505 Outer membrane protein beta-barrel domain LNQ40_006290 PF00571 CBS domain LNQ40_006290 PF01769 Divalent cation transporter LNQ40_006290 PF03448 MgtE intracellular N domain LNQ40_006295 PF01545 Cation efflux family LNQ40_006295 PF16916 Dimerisation domain of Zinc Transporter LNQ40_006300 PF12848 ABC transporter LNQ40_006300 PF00005 ABC transporter LNQ40_006305 PF00899 ThiF family LNQ40_006310 PF00994 Probable molybdopterin binding domain LNQ40_006310 PF03454 MoeA C-terminal region (domain IV) LNQ40_006310 PF03453 MoeA N-terminal region (domain I and II) LNQ40_006320 PF00756 Putative esterase LNQ40_006325 PF08240 Alcohol dehydrogenase GroES-like domain LNQ40_006325 PF00107 Zinc-binding dehydrogenase LNQ40_006330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_006330 PF03466 LysR substrate binding domain LNQ40_006335 PF06779 Uncharacterised MFS-type transporter YbfB LNQ40_006340 PF01227 GTP cyclohydrolase I LNQ40_006345 PF04235 Protein of unknown function (DUF418) LNQ40_006350 PF00356 Bacterial regulatory proteins, lacI family LNQ40_006355 PF13407 Periplasmic binding protein domain LNQ40_006360 PF00005 ABC transporter LNQ40_006365 PF02653 Branched-chain amino acid transport system / permease component LNQ40_006370 PF02698 DUF218 domain LNQ40_006375 PF03949 Malic enzyme, NAD binding domain LNQ40_006375 PF00390 Malic enzyme, N-terminal domain LNQ40_006385 PF01385 Probable transposase LNQ40_006385 PF07282 Putative transposase DNA-binding domain LNQ40_006385 PF12323 Helix-turn-helix domain LNQ40_006390 PF01797 Transposase IS200 like LNQ40_006400 PF03466 LysR substrate binding domain LNQ40_006400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_006405 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ40_006405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ40_006410 PF04172 LrgB-like family LNQ40_006415 PF03788 LrgA family LNQ40_006425 PF01588 Putative tRNA binding domain LNQ40_006425 PF09334 tRNA synthetases class I (M) LNQ40_006430 PF10609 NUBPL iron-transfer P-loop NTPase LNQ40_006435 PF00485 Phosphoribulokinase / Uridine kinase family LNQ40_006440 PF00692 dUTPase LNQ40_006445 PF05170 AsmA family LNQ40_006450 PF03606 C4-dicarboxylate anaerobic carrier LNQ40_006455 PF03741 Integral membrane protein TerC family LNQ40_006455 PF03471 Transporter associated domain LNQ40_006455 PF00571 CBS domain LNQ40_006460 PF00483 Nucleotidyl transferase LNQ40_006465 PF00483 Nucleotidyl transferase LNQ40_006470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LNQ40_006470 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LNQ40_006480 PF01502 Phosphoribosyl-AMP cyclohydrolase LNQ40_006480 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LNQ40_006485 PF00977 Histidine biosynthesis protein LNQ40_006490 PF00977 Histidine biosynthesis protein LNQ40_006495 PF00117 Glutamine amidotransferase class-I LNQ40_006500 PF00475 Imidazoleglycerol-phosphate dehydratase LNQ40_006505 PF00155 Aminotransferase class I and II LNQ40_006510 PF00815 Histidinol dehydrogenase LNQ40_006515 PF01634 ATP phosphoribosyltransferase LNQ40_006515 PF08029 HisG, C-terminal domain LNQ40_006525 PF01370 NAD dependent epimerase/dehydratase family LNQ40_006530 PF00043 Glutathione S-transferase, C-terminal domain LNQ40_006530 PF13417 Glutathione S-transferase, N-terminal domain LNQ40_006545 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ40_006550 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_006550 PF00571 CBS domain LNQ40_006555 PF07943 Penicillin-binding protein 5, C-terminal domain LNQ40_006555 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ40_006560 PF03315 Serine dehydratase beta chain LNQ40_006560 PF03313 Serine dehydratase alpha chain LNQ40_006570 PF00455 DeoR C terminal sensor domain LNQ40_006570 PF08220 DeoR-like helix-turn-helix domain LNQ40_006575 PF01791 DeoC/LacD family aldolase LNQ40_006580 PF01569 PAP2 superfamily LNQ40_006590 PF06826 Predicted Permease Membrane Region LNQ40_006590 PF02080 TrkA-C domain LNQ40_006595 PF00462 Glutaredoxin LNQ40_006600 PF07214 Protein of unknown function (DUF1418) LNQ40_006605 PF10722 Putative bacterial sensory transduction regulator LNQ40_006610 PF13416 Bacterial extracellular solute-binding protein LNQ40_006615 PF00005 ABC transporter LNQ40_006615 PF08402 TOBE domain LNQ40_006620 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006625 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006630 PF10767 Protein of unknown function (DUF2593) LNQ40_006635 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ40_006640 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_006645 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006650 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_006655 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_006660 PF00005 ABC transporter LNQ40_006665 PF12883 Protein of unknown function (DUF3828) LNQ40_006670 PF01906 Putative heavy-metal-binding LNQ40_006675 PF01370 NAD dependent epimerase/dehydratase family LNQ40_006680 PF11066 Protein of unknown function (DUF2867) LNQ40_006680 PF13460 NAD(P)H-binding LNQ40_006685 PF01212 Beta-eliminating lyase LNQ40_006690 PF00175 Oxidoreductase NAD-binding domain LNQ40_006690 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ40_006690 PF00970 Oxidoreductase FAD-binding domain LNQ40_006695 PF03063 Prismane/CO dehydrogenase family LNQ40_006700 PF03956 Lysine exporter LysO LNQ40_006705 PF11398 Protein of unknown function (DUF2813) LNQ40_006710 PF04393 Protein of unknown function (DUF535) LNQ40_006715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ40_006720 PF02687 FtsX-like permease family LNQ40_006720 PF12704 MacB-like periplasmic core domain LNQ40_006720 PF00005 ABC transporter LNQ40_006725 PF00313 'Cold-shock' DNA-binding domain LNQ40_006730 PF02617 ATP-dependent Clp protease adaptor protein ClpS LNQ40_006735 PF00004 ATPase family associated with various cellular activities (AAA) LNQ40_006735 PF07724 AAA domain (Cdc48 subfamily) LNQ40_006735 PF17871 AAA lid domain LNQ40_006735 PF02861 Clp amino terminal domain, pathogenicity island component LNQ40_006735 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ40_006740 PF01176 Translation initiation factor 1A / IF-1 LNQ40_006745 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LNQ40_006750 PF00664 ABC transporter transmembrane region LNQ40_006750 PF00005 ABC transporter LNQ40_006755 PF00005 ABC transporter LNQ40_006755 PF00664 ABC transporter transmembrane region LNQ40_006760 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_006765 PF01037 Lrp/AsnC ligand binding domain LNQ40_006770 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LNQ40_006770 PF17854 FtsK alpha domain LNQ40_006770 PF09397 Ftsk gamma domain LNQ40_006770 PF01580 FtsK/SpoIIIE family LNQ40_006775 PF03548 Outer membrane lipoprotein carrier protein LolA LNQ40_006780 PF00004 ATPase family associated with various cellular activities (AAA) LNQ40_006780 PF16193 AAA C-terminal domain LNQ40_006780 PF12002 MgsA AAA+ ATPase C terminal LNQ40_006785 PF02403 Seryl-tRNA synthetase N-terminal domain LNQ40_006785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ40_006790 PF07690 Major Facilitator Superfamily LNQ40_006795 PF04055 Radical SAM superfamily LNQ40_006800 PF02901 Pyruvate formate lyase-like LNQ40_006800 PF01228 Glycine radical LNQ40_006805 PF01226 Formate/nitrite transporter LNQ40_006810 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LNQ40_006810 PF18381 YcaO cyclodehydratase C-terminal domain LNQ40_006815 PF00710 Asparaginase, N-terminal LNQ40_006815 PF17763 Glutaminase/Asparaginase C-terminal domain LNQ40_006820 PF00266 Aminotransferase class-V LNQ40_006825 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNQ40_006830 PF02224 Cytidylate kinase LNQ40_006835 PF00575 S1 RNA binding domain LNQ40_006840 PF00216 Bacterial DNA-binding protein LNQ40_006845 PF03772 Competence protein LNQ40_006845 PF00753 Metallo-beta-lactamase superfamily LNQ40_006850 PF00664 ABC transporter transmembrane region LNQ40_006850 PF00005 ABC transporter LNQ40_006855 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LNQ40_006860 PF07063 Domain of unknown function (DUF1338) LNQ40_006865 PF00313 'Cold-shock' DNA-binding domain LNQ40_006870 PF00313 'Cold-shock' DNA-binding domain LNQ40_006875 PF03966 Trm112p-like protein LNQ40_006880 PF02348 Cytidylyltransferase LNQ40_006885 PF01636 Phosphotransferase enzyme family LNQ40_006890 PF02698 DUF218 domain LNQ40_006895 PF13847 Methyltransferase domain LNQ40_006900 PF03882 MukF winged-helix domain LNQ40_006900 PF17193 MukF C-terminal domain LNQ40_006900 PF17192 MukF middle domain LNQ40_006905 PF04288 MukE-like family LNQ40_006910 PF04310 MukB N-terminal LNQ40_006910 PF16330 MukB hinge domain LNQ40_006915 PF01471 Putative peptidoglycan binding domain LNQ40_006915 PF03734 L,D-transpeptidase catalytic domain LNQ40_006920 PF05951 Bacterial protein of unknown function (DUF882) LNQ40_006925 PF00753 Metallo-beta-lactamase superfamily LNQ40_006930 PF00155 Aminotransferase class I and II LNQ40_006935 PF00267 Gram-negative porin LNQ40_006940 PF01336 OB-fold nucleic acid binding domain LNQ40_006940 PF00152 tRNA synthetases class II (D, K and N) LNQ40_006945 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LNQ40_006945 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LNQ40_006950 PF01433 Peptidase family M1 domain LNQ40_006950 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LNQ40_006950 PF11940 Domain of unknown function (DUF3458) Ig-like fold LNQ40_006955 PF01180 Dihydroorotate dehydrogenase LNQ40_006960 PF07126 Cell-division protein ZapC LNQ40_006965 PF03476 MOSC N-terminal beta barrel domain LNQ40_006965 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ40_006965 PF03473 MOSC domain LNQ40_006970 PF10672 S-adenosylmethionine-dependent methyltransferase LNQ40_006970 PF02926 THUMP domain LNQ40_006970 PF01170 Putative RNA methylase family UPF0020 LNQ40_006975 PF12848 ABC transporter LNQ40_006975 PF16326 ABC transporter C-terminal domain LNQ40_006975 PF00005 ABC transporter LNQ40_006980 PF04403 Paraquat-inducible protein A LNQ40_006985 PF02470 MlaD protein LNQ40_006990 PF03886 ABC-type transport auxiliary lipoprotein component LNQ40_006995 PF04957 Ribosome modulation factor LNQ40_007000 PF07977 FabA-like domain LNQ40_007005 PF13654 AAA domain LNQ40_007005 PF05362 Lon protease (S16) C-terminal proteolytic domain LNQ40_007010 PF06303 MatP N-terminal domain LNQ40_007010 PF17414 MatP C-terminal ribbon-helix-helix domain LNQ40_007015 PF00691 OmpA family LNQ40_007015 PF01389 OmpA-like transmembrane domain LNQ40_007020 PF03846 Cell division inhibitor SulA LNQ40_007025 PF04994 TfoX C-terminal domain LNQ40_007025 PF04993 TfoX N-terminal domain LNQ40_007030 PF12805 FUSC-like inner membrane protein yccS LNQ40_007035 PF03733 Inner membrane component domain LNQ40_007040 PF12462 DNA helicase IV / RNA helicase N terminal LNQ40_007040 PF13361 UvrD-like helicase C-terminal domain LNQ40_007040 PF00580 UvrD/REP helicase N-terminal domain LNQ40_007045 PF02142 MGS-like domain LNQ40_007050 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LNQ40_007055 PF13380 CoA binding domain LNQ40_007060 PF08755 Hemimethylated DNA-binding protein YccV like LNQ40_007065 PF17785 PUA-like domain LNQ40_007065 PF10672 S-adenosylmethionine-dependent methyltransferase LNQ40_007070 PF00708 Acylphosphatase LNQ40_007075 PF04358 DsrC like protein LNQ40_007085 PF00484 Carbonic anhydrase LNQ40_007090 PF03471 Transporter associated domain LNQ40_007090 PF00999 Sodium/hydrogen exchanger family LNQ40_007090 PF02080 TrkA-C domain LNQ40_007100 PF01757 Acyltransferase family LNQ40_007105 PF04349 Periplasmic glucan biosynthesis protein, MdoG LNQ40_007110 PF00535 Glycosyl transferase family 2 LNQ40_007120 PF00854 POT family LNQ40_007130 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ40_007135 PF17773 UPF0176 acylphosphatase like domain LNQ40_007135 PF12368 Rhodanase C-terminal LNQ40_007135 PF00581 Rhodanese-like domain LNQ40_007140 PF01594 AI-2E family transporter LNQ40_007145 PF00196 Bacterial regulatory proteins, luxR family LNQ40_007150 PF01266 FAD dependent oxidoreductase LNQ40_007155 PF13991 BssS protein family LNQ40_007160 PF06183 DinI-like family LNQ40_007165 PF01979 Amidohydrolase family LNQ40_007170 PF03992 Antibiotic biosynthesis monooxygenase LNQ40_007180 PF12111 Polyribonucleotide phosphorylase C terminal LNQ40_007180 PF10150 Ribonuclease E/G family LNQ40_007180 PF00575 S1 RNA binding domain LNQ40_007185 PF00849 RNA pseudouridylate synthase LNQ40_007185 PF01479 S4 domain LNQ40_007190 PF02545 Maf-like protein LNQ40_007195 PF02620 Large ribosomal RNA subunit accumulation protein YceD LNQ40_007200 PF01783 Ribosomal L32p protein family LNQ40_007205 PF02504 Fatty acid synthesis protein LNQ40_007210 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LNQ40_007210 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LNQ40_007215 PF00698 Acyl transferase domain LNQ40_007225 PF00550 Phosphopantetheine attachment site LNQ40_007230 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ40_007230 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ40_007235 PF01063 Amino-transferase class IV LNQ40_007240 PF02618 YceG-like family LNQ40_007245 PF02223 Thymidylate kinase LNQ40_007250 PF09115 DNA polymerase III, delta subunit, C terminal LNQ40_007255 PF01026 TatD related DNase LNQ40_007260 PF02378 Phosphotransferase system, EIIC LNQ40_007260 PF00367 phosphotransferase system, EIIB LNQ40_007265 PF01230 HIT domain LNQ40_007270 PF07233 Protein of unknown function (DUF1425) LNQ40_007275 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LNQ40_007275 PF13036 Peptidoglycan-synthase activator LpoB LNQ40_007280 PF01636 Phosphotransferase enzyme family LNQ40_007285 PF00933 Glycosyl hydrolase family 3 N terminal domain LNQ40_007290 PF05728 Uncharacterised protein family (UPF0227) LNQ40_007295 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_007300 PF05433 Glycine zipper 2TM domain LNQ40_007305 PF17757 UvrB interaction domain LNQ40_007305 PF00271 Helicase conserved C-terminal domain LNQ40_007305 PF03461 TRCF domain LNQ40_007305 PF02559 CarD-like/TRCF domain LNQ40_007305 PF00270 DEAD/DEAH box helicase LNQ40_007310 PF02687 FtsX-like permease family LNQ40_007310 PF12704 MacB-like periplasmic core domain LNQ40_007315 PF00005 ABC transporter LNQ40_007320 PF02687 FtsX-like permease family LNQ40_007320 PF12704 MacB-like periplasmic core domain LNQ40_007325 PF00480 ROK family LNQ40_007330 PF02146 Sir2 family LNQ40_007335 PF07687 Peptidase dimerisation domain LNQ40_007335 PF01546 Peptidase family M20/M25/M40 LNQ40_007340 PF08007 Cupin superfamily protein LNQ40_007345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_007345 PF08918 PhoQ Sensor LNQ40_007350 PF00072 Response regulator receiver domain LNQ40_007350 PF00486 Transcriptional regulatory protein, C terminal LNQ40_007360 PF00206 Lyase LNQ40_007360 PF08328 Adenylosuccinate lyase C-terminal LNQ40_007365 PF04356 Protein of unknown function (DUF489) LNQ40_007375 PF00293 NUDIX domain LNQ40_007380 PF00849 RNA pseudouridylate synthase LNQ40_007385 PF00180 Isocitrate/isopropylmalate dehydrogenase LNQ40_007390 PF03472 Autoinducer binding domain LNQ40_007390 PF00196 Bacterial regulatory proteins, luxR family LNQ40_007395 PF00765 Autoinducer synthase LNQ40_007400 PF00232 Glycosyl hydrolase family 1 LNQ40_007410 PF01432 Peptidase family M3 LNQ40_007415 PF02203 Tar ligand binding domain homologue LNQ40_007415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ40_007415 PF00672 HAMP domain LNQ40_007420 PF03390 2-hydroxycarboxylate transporter family LNQ40_007425 PF01797 Transposase IS200 like LNQ40_007430 PF07282 Putative transposase DNA-binding domain LNQ40_007430 PF01385 Probable transposase LNQ40_007430 PF12323 Helix-turn-helix domain LNQ40_007440 PF00072 Response regulator receiver domain LNQ40_007445 PF17203 Single cache domain 3 LNQ40_007445 PF00989 PAS fold LNQ40_007445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_007445 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LNQ40_007450 PF00939 Sodium:sulfate symporter transmembrane region LNQ40_007455 PF00413 Matrixin LNQ40_007455 PF08548 Peptidase M10 serralysin C terminal LNQ40_007455 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LNQ40_007460 PF02974 Protease inhibitor Inh LNQ40_007465 PF00664 ABC transporter transmembrane region LNQ40_007465 PF00005 ABC transporter LNQ40_007470 PF00529 HlyD membrane-fusion protein of T1SS LNQ40_007475 PF02321 Outer membrane efflux protein LNQ40_007490 PF02311 AraC-like ligand binding domain LNQ40_007490 PF12833 Helix-turn-helix domain LNQ40_007495 PF02562 PhoH-like protein LNQ40_007500 PF01699 Sodium/calcium exchanger protein LNQ40_007505 PF08021 Siderophore-interacting FAD-binding domain LNQ40_007505 PF04954 Siderophore-interacting protein LNQ40_007510 PF00672 HAMP domain LNQ40_007510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_007510 PF07730 Histidine kinase LNQ40_007510 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LNQ40_007520 PF02322 Cytochrome bd terminal oxidase subunit II LNQ40_007525 PF01654 Cytochrome bd terminal oxidase subunit I LNQ40_007530 PF00392 Bacterial regulatory proteins, gntR family LNQ40_007530 PF00155 Aminotransferase class I and II LNQ40_007535 PF00202 Aminotransferase class-III LNQ40_007540 PF04958 Arginine N-succinyltransferase beta subunit LNQ40_007545 PF00171 Aldehyde dehydrogenase family LNQ40_007550 PF04996 Succinylarginine dihydrolase LNQ40_007560 PF00267 Gram-negative porin LNQ40_007570 PF01979 Amidohydrolase family LNQ40_007575 PF00392 Bacterial regulatory proteins, gntR family LNQ40_007575 PF07702 UTRA domain LNQ40_007580 PF01979 Amidohydrolase family LNQ40_007585 PF05962 HutD LNQ40_007590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_007590 PF03466 LysR substrate binding domain LNQ40_007600 PF03824 High-affinity nickel-transport protein LNQ40_007605 PF01300 Telomere recombination LNQ40_007605 PF07503 HypF finger LNQ40_007605 PF17788 HypF Kae1-like domain LNQ40_007605 PF00708 Acylphosphatase LNQ40_007610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ40_007610 PF00384 Molybdopterin oxidoreductase LNQ40_007610 PF01568 Molydopterin dinucleotide binding domain LNQ40_007615 PF13247 4Fe-4S dicluster domain LNQ40_007615 PF12800 4Fe-4S binding domain LNQ40_007620 PF01750 Hydrogenase maturation protease LNQ40_007625 PF07450 Formate hydrogenlyase maturation protein HycH LNQ40_007630 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LNQ40_007635 PF12838 4Fe-4S dicluster domain LNQ40_007640 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LNQ40_007640 PF00374 Nickel-dependent hydrogenase LNQ40_007640 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LNQ40_007645 PF00146 NADH dehydrogenase LNQ40_007650 PF00361 Proton-conducting membrane transporter LNQ40_007655 PF13247 4Fe-4S dicluster domain LNQ40_007660 PF11046 Transcriptional repressor of hyc and hyp operons LNQ40_007665 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LNQ40_007670 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNQ40_007675 PF01455 HupF/HypC family LNQ40_007680 PF01924 Hydrogenase formation hypA family LNQ40_007685 PF00586 AIR synthase related protein, N-terminal domain LNQ40_007685 PF02769 AIR synthase related protein, C-terminal domain LNQ40_007690 PF00158 Sigma-54 interaction domain LNQ40_007690 PF02954 Bacterial regulatory protein, Fis family LNQ40_007690 PF01590 GAF domain LNQ40_007700 PF13954 PapC N-terminal domain LNQ40_007700 PF00577 Outer membrane usher protein LNQ40_007705 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ40_007705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ40_007720 PF12833 Helix-turn-helix domain LNQ40_007725 PF01926 50S ribosome-binding GTPase LNQ40_007725 PF06071 Protein of unknown function (DUF933) LNQ40_007735 PF01195 Peptidyl-tRNA hydrolase LNQ40_007740 PF10762 Protein of unknown function (DUF2583) LNQ40_007745 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LNQ40_007745 PF14572 Phosphoribosyl synthetase-associated domain LNQ40_007750 PF08544 GHMP kinases C terminal LNQ40_007750 PF00288 GHMP kinases N terminal domain LNQ40_007755 PF03550 Outer membrane lipoprotein LolB LNQ40_007760 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LNQ40_007760 PF01488 Shikimate / quinate 5-dehydrogenase LNQ40_007760 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LNQ40_007765 PF03462 PCRF domain LNQ40_007765 PF00472 RF-1 domain LNQ40_007770 PF17827 PrmC N-terminal domain LNQ40_007770 PF13847 Methyltransferase domain LNQ40_007775 PF04247 Invasion gene expression up-regulator, SirB LNQ40_007780 PF13369 Transglutaminase-like superfamily LNQ40_007785 PF00793 DAHP synthetase I family LNQ40_007790 PF01740 STAS domain LNQ40_007790 PF00916 Sulfate permease family LNQ40_007795 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_007805 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ40_007815 PF00854 POT family LNQ40_007820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ40_007825 PF02811 PHP domain LNQ40_007830 PF02613 Nitrate reductase delta subunit LNQ40_007835 PF07273 Protein of unknown function (DUF1439) LNQ40_007845 PF07690 Major Facilitator Superfamily LNQ40_007850 PF13302 Acetyltransferase (GNAT) domain LNQ40_007855 PF04337 Protein of unknown function, DUF480 LNQ40_007860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ40_007865 PF03023 Lipid II flippase MurJ LNQ40_007870 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ40_007870 PF17287 POTRA domain LNQ40_007870 PF08479 POTRA domain, ShlB-type LNQ40_007880 PF05860 haemagglutination activity domain LNQ40_007880 PF13332 Hemagglutinin repeat LNQ40_007890 PF03485 Arginyl tRNA synthetase N terminal domain LNQ40_007890 PF00750 tRNA synthetases class I (R) LNQ40_007890 PF05746 DALR anticodon binding domain LNQ40_007895 PF06185 YecM protein LNQ40_007900 PF03932 CutC family LNQ40_007905 PF08003 Protein of unknown function (DUF1698) LNQ40_007910 PF13649 Methyltransferase domain LNQ40_007915 PF01124 MAPEG family LNQ40_007920 PF01904 Protein of unknown function DUF72 LNQ40_007930 PF00152 tRNA synthetases class II (D, K and N) LNQ40_007930 PF01336 OB-fold nucleic acid binding domain LNQ40_007930 PF02938 GAD domain LNQ40_007935 PF00293 NUDIX domain LNQ40_007940 PF01709 Transcriptional regulator LNQ40_007945 PF02075 Crossover junction endodeoxyribonuclease RuvC LNQ40_007950 PF07499 RuvA, C-terminal domain LNQ40_007950 PF01330 RuvA N terminal domain LNQ40_007955 PF05491 RuvB C-terminal winged helix domain LNQ40_007955 PF05496 Holliday junction DNA helicase RuvB P-loop domain LNQ40_007955 PF17864 RuvB AAA lid domain LNQ40_007960 PF00854 POT family LNQ40_007965 PF00950 ABC 3 transport family LNQ40_007970 PF00005 ABC transporter LNQ40_007975 PF01297 Zinc-uptake complex component A periplasmic LNQ40_007980 PF08525 Opacity-associated protein A N-terminal motif LNQ40_007980 PF01551 Peptidase family M23 LNQ40_007980 PF01476 LysM domain LNQ40_007985 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ40_007990 PF02887 Pyruvate kinase, alpha/beta domain LNQ40_007990 PF00224 Pyruvate kinase, barrel domain LNQ40_007995 PF01380 SIS domain LNQ40_007995 PF01418 Helix-turn-helix domain, rpiR family LNQ40_008000 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LNQ40_008000 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LNQ40_008005 PF01081 KDPG and KHG aldolase LNQ40_008010 PF00893 Small Multidrug Resistance protein LNQ40_008015 PF00893 Small Multidrug Resistance protein LNQ40_008020 PF01042 Endoribonuclease L-PSP LNQ40_008025 PF04851 Type III restriction enzyme, res subunit LNQ40_008025 PF13307 Helicase C-terminal domain LNQ40_008030 PF00814 Glycoprotease family LNQ40_008035 PF03843 Outer membrane lipoprotein Slp family LNQ40_008040 PF00501 AMP-binding enzyme LNQ40_008040 PF13193 AMP-binding enzyme C-terminal domain LNQ40_008045 PF01612 3'-5' exonuclease LNQ40_008045 PF00570 HRDC domain LNQ40_008050 PF03776 Septum formation topological specificity factor MinE LNQ40_008055 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNQ40_008060 PF05209 Septum formation inhibitor MinC, N-terminal domain LNQ40_008060 PF03775 Septum formation inhibitor MinC, C-terminal domain LNQ40_008065 PF05166 YcgL domain LNQ40_008070 PF01557 Fumarylacetoacetate (FAA) hydrolase family LNQ40_008075 PF03692 Putative zinc- or iron-chelating domain LNQ40_008090 PF02600 Disulfide bond formation protein DsbB LNQ40_008095 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LNQ40_008100 PF07840 FadR C-terminal domain LNQ40_008100 PF00392 Bacterial regulatory proteins, gntR family LNQ40_008105 PF04293 SpoVR like protein LNQ40_008110 PF01266 FAD dependent oxidoreductase LNQ40_008115 PF00842 Alanine racemase, C-terminal domain LNQ40_008115 PF01168 Alanine racemase, N-terminal domain LNQ40_008120 PF07690 Major Facilitator Superfamily LNQ40_008130 PF13426 PAS domain LNQ40_008130 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_008130 PF00563 EAL domain LNQ40_008135 PF03466 LysR substrate binding domain LNQ40_008135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_008140 PF03306 Alpha-acetolactate decarboxylase LNQ40_008145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ40_008145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ40_008145 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ40_008150 PF04285 Protein of unknown function (DUF444) LNQ40_008155 PF08298 PrkA AAA domain LNQ40_008155 PF06798 PrkA serine protein kinase C-terminal domain LNQ40_008160 PF06629 MltA-interacting protein MipA LNQ40_008165 PF00884 Sulfatase LNQ40_008170 PF01263 Aldose 1-epimerase LNQ40_008175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LNQ40_008175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LNQ40_008180 PF01641 SelR domain LNQ40_008185 PF07023 Protein of unknown function (DUF1315) LNQ40_008190 PF00857 Isochorismatase family LNQ40_008195 PF00710 Asparaginase, N-terminal LNQ40_008195 PF17763 Glutaminase/Asparaginase C-terminal domain LNQ40_008200 PF01343 Peptidase family S49 LNQ40_008205 PF00881 Nitroreductase family LNQ40_008210 PF02769 AIR synthase related protein, C-terminal domain LNQ40_008210 PF00586 AIR synthase related protein, N-terminal domain LNQ40_008215 PF01751 Toprim domain LNQ40_008215 PF01131 DNA topoisomerase LNQ40_008220 PF07383 Protein of unknown function (DUF1496) LNQ40_008225 PF00293 NUDIX domain LNQ40_008230 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ40_008240 PF03466 LysR substrate binding domain LNQ40_008240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_008265 PF00551 Formyl transferase LNQ40_008265 PF01842 ACT domain LNQ40_008270 PF02810 SEC-C motif LNQ40_008275 PF01734 Patatin-like phospholipase LNQ40_008280 PF00072 Response regulator receiver domain LNQ40_008285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNQ40_008285 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNQ40_008285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNQ40_008290 PF00816 H-NS histone family LNQ40_008295 PF00265 Thymidine kinase LNQ40_008300 PF00171 Aldehyde dehydrogenase family LNQ40_008300 PF00465 Iron-containing alcohol dehydrogenase LNQ40_008310 PF01914 MarC family integral membrane protein LNQ40_008315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ40_008320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ40_008325 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_008330 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ40_008330 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_008335 PF00005 ABC transporter LNQ40_008335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ40_008340 PF00005 ABC transporter LNQ40_008340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ40_008345 PF04269 Protein of unknown function, DUF440 LNQ40_008350 PF13091 PLD-like domain LNQ40_008350 PF13396 Phospholipase_D-nuclease N-terminal LNQ40_008370 PF03795 YCII-related domain LNQ40_008385 PF00486 Transcriptional regulatory protein, C terminal LNQ40_008395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ40_008395 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ40_008400 PF13953 PapC C-terminal domain LNQ40_008400 PF13954 PapC N-terminal domain LNQ40_008400 PF00577 Outer membrane usher protein LNQ40_008420 PF03544 Gram-negative bacterial TonB protein C-terminal LNQ40_008425 PF03061 Thioesterase superfamily LNQ40_008430 PF04279 Intracellular septation protein A LNQ40_008435 PF00916 Sulfate permease family LNQ40_008435 PF01740 STAS domain LNQ40_008445 PF03692 Putative zinc- or iron-chelating domain LNQ40_008450 PF03922 OmpW family LNQ40_008460 PF00290 Tryptophan synthase alpha chain LNQ40_008465 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_008470 PF00218 Indole-3-glycerol phosphate synthase LNQ40_008470 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LNQ40_008475 PF02885 Glycosyl transferase family, helical bundle domain LNQ40_008475 PF00591 Glycosyl transferase family, a/b domain LNQ40_008480 PF00117 Glutamine amidotransferase class-I LNQ40_008485 PF04715 Anthranilate synthase component I, N terminal region LNQ40_008485 PF00425 chorismate binding enzyme LNQ40_008490 PF02811 PHP domain LNQ40_008495 PF01300 Telomere recombination LNQ40_008500 PF00849 RNA pseudouridylate synthase LNQ40_008500 PF01479 S4 domain LNQ40_008505 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LNQ40_008510 PF00106 short chain dehydrogenase LNQ40_008515 PF01343 Peptidase family S49 LNQ40_008515 PF08496 Peptidase family S49 N-terminal LNQ40_008520 PF10692 Protein of unknown function (DUF2498) LNQ40_008525 PF08272 Topoisomerase I zinc-ribbon-like LNQ40_008525 PF01131 DNA topoisomerase LNQ40_008525 PF01751 Toprim domain LNQ40_008525 PF01396 Topoisomerase DNA binding C4 zinc finger LNQ40_008530 PF03466 LysR substrate binding domain LNQ40_008530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_008545 PF00694 Aconitase C-terminal domain LNQ40_008545 PF00330 Aconitase family (aconitate hydratase) LNQ40_008550 PF00925 GTP cyclohydrolase II LNQ40_008555 PF01569 PAP2 superfamily LNQ40_008560 PF06305 Lipopolysaccharide assembly protein A domain LNQ40_008565 PF18073 Rubredoxin metal binding domain LNQ40_008575 PF07338 Protein of unknown function (DUF1471) LNQ40_008580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LNQ40_008585 PF01253 Translation initiation factor SUI1 LNQ40_008590 PF05433 Glycine zipper 2TM domain LNQ40_008595 PF00923 Transaldolase/Fructose-6-phosphate aldolase LNQ40_008600 PF00563 EAL domain LNQ40_008600 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_008600 PF05231 MASE1 LNQ40_008600 PF08447 PAS fold LNQ40_008600 PF08448 PAS fold LNQ40_008600 PF13426 PAS domain LNQ40_008605 PF00575 S1 RNA binding domain LNQ40_008605 PF00773 RNB domain LNQ40_008605 PF08206 Ribonuclease B OB domain LNQ40_008610 PF10576 Iron-sulfur binding domain of endonuclease III LNQ40_008610 PF00633 Helix-hairpin-helix motif LNQ40_008610 PF00730 HhH-GPD superfamily base excision DNA repair protein LNQ40_008615 PF02508 Rnf-Nqr subunit, membrane protein LNQ40_008620 PF04205 FMN-binding domain LNQ40_008625 PF03116 NQR2, RnfD, RnfE family LNQ40_008630 PF12833 Helix-turn-helix domain LNQ40_008630 PF06445 GyrI-like small molecule binding domain LNQ40_008635 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNQ40_008635 PF13237 4Fe-4S dicluster domain LNQ40_008635 PF13375 RnfC Barrel sandwich hybrid domain LNQ40_008635 PF10531 SLBB domain LNQ40_008640 PF04060 Putative Fe-S cluster LNQ40_008645 PF02508 Rnf-Nqr subunit, membrane protein LNQ40_008650 PF10754 Protein of unknown function (DUF2569) LNQ40_008655 PF01268 Formate--tetrahydrofolate ligase LNQ40_008660 PF03848 Tellurite resistance protein TehB LNQ40_008660 PF09313 Domain of unknown function (DUF1971) LNQ40_008665 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ40_008665 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LNQ40_008670 PF13593 SBF-like CPA transporter family (DUF4137) LNQ40_008675 PF00962 Adenosine/AMP deaminase LNQ40_008680 PF06097 Bacterial protein of unknown function (DUF945) LNQ40_008685 PF01238 Phosphomannose isomerase type I LNQ40_008690 PF00206 Lyase LNQ40_008690 PF10415 Fumarase C C-terminus LNQ40_008695 PF05472 DNA replication terminus site-binding protein (Ter protein) LNQ40_008700 PF00480 ROK family LNQ40_008710 PF00654 Voltage gated chloride channel LNQ40_008715 PF06649 Protein of unknown function (DUF1161) LNQ40_008720 PF06932 Protein of unknown function (DUF1283) LNQ40_008725 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LNQ40_008730 PF00106 short chain dehydrogenase LNQ40_008735 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ40_008760 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LNQ40_008760 PF01048 Phosphorylase superfamily LNQ40_008790 PF14863 Alkyl sulfatase dimerisation LNQ40_008790 PF00753 Metallo-beta-lactamase superfamily LNQ40_008790 PF14864 Alkyl sulfatase C-terminal LNQ40_008810 PF13419 Haloacid dehalogenase-like hydrolase LNQ40_008820 PF06445 GyrI-like small molecule binding domain LNQ40_008825 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LNQ40_008825 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LNQ40_008830 PF00027 Cyclic nucleotide-binding domain LNQ40_008830 PF13545 Crp-like helix-turn-helix domain LNQ40_008835 PF00582 Universal stress protein family LNQ40_008845 PF00455 DeoR C terminal sensor domain LNQ40_008845 PF08220 DeoR-like helix-turn-helix domain LNQ40_008850 PF03611 PTS system sugar-specific permease component LNQ40_008855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ40_008860 PF00596 Class II Aldolase and Adducin N-terminal domain LNQ40_008865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LNQ40_008870 PF01261 Xylose isomerase-like TIM barrel LNQ40_008875 PF02233 NAD(P) transhydrogenase beta subunit LNQ40_008880 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LNQ40_008880 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LNQ40_008880 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LNQ40_008885 PF07338 Protein of unknown function (DUF1471) LNQ40_008890 PF13520 Amino acid permease LNQ40_008900 PF00072 Response regulator receiver domain LNQ40_008900 PF00486 Transcriptional regulatory protein, C terminal LNQ40_008905 PF00672 HAMP domain LNQ40_008905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_008905 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_008910 PF00080 Copper/zinc superoxide dismutase (SODC) LNQ40_008920 PF12833 Helix-turn-helix domain LNQ40_008925 PF01161 Phosphatidylethanolamine-binding protein LNQ40_008935 PF00089 Trypsin LNQ40_008940 PF00270 DEAD/DEAH box helicase LNQ40_008940 PF11898 Domain of unknown function (DUF3418) LNQ40_008940 PF04408 Helicase associated domain (HA2) LNQ40_008940 PF00271 Helicase conserved C-terminal domain LNQ40_008940 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LNQ40_008945 PF02525 Flavodoxin-like fold LNQ40_008950 PF07027 Protein of unknown function (DUF1318) LNQ40_008955 PF13617 YnbE-like lipoprotein LNQ40_008965 PF11739 Dicarboxylate transport LNQ40_008970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ40_008970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ40_008975 PF03724 META domain LNQ40_008980 PF03891 Domain of unknown function (DUF333) LNQ40_008985 PF02308 MgtC family LNQ40_008990 PF00893 Small Multidrug Resistance protein LNQ40_008995 PF10371 Domain of unknown function LNQ40_008995 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LNQ40_008995 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LNQ40_008995 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LNQ40_008995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ40_009000 PF01171 PP-loop family LNQ40_009005 PF01544 CorA-like Mg2+ transporter protein LNQ40_009010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ40_009015 PF00246 Zinc carboxypeptidase LNQ40_009020 PF13378 Enolase C-terminal domain-like LNQ40_009020 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LNQ40_009025 PF08534 Redoxin LNQ40_009030 PF00158 Sigma-54 interaction domain LNQ40_009030 PF18024 Helix-turn-helix domain LNQ40_009035 PF09722 Protein of unknown function (DUF2384) LNQ40_009040 PF08808 RES domain LNQ40_009045 PF05128 Domain of unknown function (DUF697) LNQ40_009050 PF04317 YcjX-like family, DUF463 LNQ40_009055 PF09584 Phage shock protein PspD (Phageshock_PspD) LNQ40_009060 PF04024 PspC domain LNQ40_009065 PF06667 Phage shock protein B LNQ40_009070 PF04012 PspA/IM30 family LNQ40_009075 PF02954 Bacterial regulatory protein, Fis family LNQ40_009075 PF00158 Sigma-54 interaction domain LNQ40_009085 PF02917 Pertussis toxin, subunit 1 LNQ40_009090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ40_009095 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_009100 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_009100 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ40_009105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ40_009105 PF00005 ABC transporter LNQ40_009110 PF00005 ABC transporter LNQ40_009120 PF00854 POT family LNQ40_009130 PF01556 DnaJ C terminal domain LNQ40_009130 PF00226 DnaJ domain LNQ40_009140 PF04893 Yip1 domain LNQ40_009150 PF11656 YjbD family (DUF3811) LNQ40_009155 PF00043 Glutathione S-transferase, C-terminal domain LNQ40_009155 PF02798 Glutathione S-transferase, N-terminal domain LNQ40_009160 PF08543 Phosphomethylpyrimidine kinase LNQ40_009165 PF01479 S4 domain LNQ40_009165 PF00579 tRNA synthetases class I (W and Y) LNQ40_009170 PF01243 Pyridoxamine 5'-phosphate oxidase LNQ40_009170 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LNQ40_009175 PF03702 Anhydro-N-acetylmuramic acid kinase LNQ40_009180 PF05433 Glycine zipper 2TM domain LNQ40_009185 PF01047 MarR family LNQ40_009195 PF00248 Aldo/keto reductase family LNQ40_009200 PF06945 Protein of unknown function (DUF1289) LNQ40_009205 PF08019 Phosphoethanolamine transferase EptA/EptB LNQ40_009205 PF00884 Sulfatase LNQ40_009210 PF16925 Tetracyclin repressor-like, C-terminal domain LNQ40_009210 PF00440 Bacterial regulatory proteins, tetR family LNQ40_009215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNQ40_009220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNQ40_009225 PF00929 Exonuclease LNQ40_009230 PF00462 Glutaredoxin LNQ40_009235 PF00877 NlpC/P60 family LNQ40_009240 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNQ40_009240 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNQ40_009250 PF00356 Bacterial regulatory proteins, lacI family LNQ40_009255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_009255 PF03466 LysR substrate binding domain LNQ40_009260 PF07690 Major Facilitator Superfamily LNQ40_009270 PF00677 Lumazine binding domain LNQ40_009275 PF01554 MatE LNQ40_009300 PF00224 Pyruvate kinase, barrel domain LNQ40_009300 PF02887 Pyruvate kinase, alpha/beta domain LNQ40_009305 PF04728 Lipoprotein leucine-zipper LNQ40_009310 PF17969 L,D-transpeptidase C-terminal domain LNQ40_009310 PF01476 LysM domain LNQ40_009310 PF03734 L,D-transpeptidase catalytic domain LNQ40_009315 PF02657 Fe-S metabolism associated domain LNQ40_009320 PF00266 Aminotransferase class-V LNQ40_009325 PF01458 Uncharacterized protein family (UPF0051) LNQ40_009330 PF00005 ABC transporter LNQ40_009335 PF01458 Uncharacterized protein family (UPF0051) LNQ40_009340 PF01521 Iron-sulphur cluster biosynthesis LNQ40_009345 PF03061 Thioesterase superfamily LNQ40_009350 PF02913 FAD linked oxidases, C-terminal domain LNQ40_009350 PF01565 FAD binding domain LNQ40_009350 PF13183 4Fe-4S dicluster domain LNQ40_009355 PF01594 AI-2E family transporter LNQ40_009365 PF00391 PEP-utilising enzyme, mobile domain LNQ40_009365 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ40_009365 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LNQ40_009370 PF03618 Kinase/pyrophosphorylase LNQ40_009375 PF00793 DAHP synthetase I family LNQ40_009380 PF10636 Hemin uptake protein hemP LNQ40_009385 PF07715 TonB-dependent Receptor Plug Domain LNQ40_009385 PF00593 TonB dependent receptor LNQ40_009390 PF05171 Haemin-degrading HemS.ChuX domain LNQ40_009395 PF01497 Periplasmic binding protein LNQ40_009400 PF01032 FecCD transport family LNQ40_009405 PF00005 ABC transporter LNQ40_009410 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LNQ40_009415 PF03099 Biotin/lipoate A/B protein ligase family LNQ40_009415 PF10437 Bacterial lipoate protein ligase C-terminus LNQ40_009420 PF00877 NlpC/P60 family LNQ40_009430 PF00892 EamA-like transporter family LNQ40_009435 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LNQ40_009440 PF01522 Polysaccharide deacetylase LNQ40_009445 PF00551 Formyl transferase LNQ40_009445 PF01370 NAD dependent epimerase/dehydratase family LNQ40_009445 PF02911 Formyl transferase, C-terminal domain LNQ40_009450 PF00535 Glycosyl transferase family 2 LNQ40_009455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ40_009460 PF00005 ABC transporter LNQ40_009465 PF01032 FecCD transport family LNQ40_009500 PF04606 Ogr/Delta-like zinc finger LNQ40_009510 PF00216 Bacterial DNA-binding protein LNQ40_009515 PF03483 B3/4 domain LNQ40_009515 PF03484 tRNA synthetase B5 domain LNQ40_009515 PF03147 Ferredoxin-fold anticodon binding domain LNQ40_009515 PF01588 Putative tRNA binding domain LNQ40_009515 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LNQ40_009520 PF01409 tRNA synthetases class II core domain (F) LNQ40_009520 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LNQ40_009525 PF00453 Ribosomal protein L20 LNQ40_009530 PF01632 Ribosomal protein L35 LNQ40_009535 PF05198 Translation initiation factor IF-3, N-terminal domain LNQ40_009535 PF00707 Translation initiation factor IF-3, C-terminal domain LNQ40_009540 PF03129 Anticodon binding domain LNQ40_009540 PF02824 TGS domain LNQ40_009540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ40_009540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ40_009570 PF01914 MarC family integral membrane protein LNQ40_009575 PF01464 Transglycosylase SLT domain LNQ40_009580 PF01297 Zinc-uptake complex component A periplasmic LNQ40_009585 PF00005 ABC transporter LNQ40_009590 PF00950 ABC 3 transport family LNQ40_009595 PF00950 ABC 3 transport family LNQ40_009600 PF03881 Fructosamine kinase LNQ40_009605 PF14002 YniB-like protein LNQ40_009610 PF13419 Haloacid dehalogenase-like hydrolase LNQ40_009615 PF04307 LexA-binding, inner membrane-associated putative hydrolase LNQ40_009620 PF00375 Sodium:dicarboxylate symporter family LNQ40_009625 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ40_009630 PF01614 Bacterial transcriptional regulator LNQ40_009630 PF09339 IclR helix-turn-helix domain LNQ40_009635 PF07690 Major Facilitator Superfamily LNQ40_009645 PF01435 Peptidase family M48 LNQ40_009650 PF11818 C-terminal domain of tail specific protease (DUF3340) LNQ40_009650 PF00595 PDZ domain LNQ40_009650 PF03572 Peptidase family S41 LNQ40_009650 PF17804 Tail specific protease N-terminal domain LNQ40_009655 PF04352 ProQ/FINO family LNQ40_009655 PF17516 ProQ C-terminal domain LNQ40_009660 PF13185 GAF domain LNQ40_009665 PF04403 Paraquat-inducible protein A LNQ40_009670 PF02470 MlaD protein LNQ40_009675 PF00563 EAL domain LNQ40_009675 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_009675 PF00360 Phytochrome region LNQ40_009675 PF01590 GAF domain LNQ40_009680 PF07351 Protein of unknown function (DUF1480) LNQ40_009705 PF05643 Putative bacterial lipoprotein (DUF799) LNQ40_009715 PF03783 Curli production assembly/transport component CsgG LNQ40_009720 PF10753 Toxin GhoT_OrtT LNQ40_009740 PF00144 Beta-lactamase LNQ40_009750 PF10709 Protein of unknown function (DUF2511) LNQ40_009755 PF05425 Copper resistance protein D LNQ40_009760 PF04234 CopC domain LNQ40_009765 PF00210 Ferritin-like domain LNQ40_009770 PF06440 DNA polymerase III, theta subunit LNQ40_009775 PF00561 alpha/beta hydrolase fold LNQ40_009780 PF00929 Exonuclease LNQ40_009785 PF00326 Prolyl oligopeptidase family LNQ40_009785 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LNQ40_009790 PF13995 YebF-like protein LNQ40_009795 PF04266 ASCH domain LNQ40_009800 PF07130 YebG protein LNQ40_009805 PF00271 Helicase conserved C-terminal domain LNQ40_009805 PF03880 DbpA RNA binding domain LNQ40_009805 PF00270 DEAD/DEAH box helicase LNQ40_009810 PF02222 ATP-grasp domain LNQ40_009815 PF03701 Uncharacterised protein family (UPF0181) LNQ40_009820 PF04715 Anthranilate synthase component I, N terminal region LNQ40_009820 PF00425 chorismate binding enzyme LNQ40_009825 PF00293 NUDIX domain LNQ40_009830 PF03313 Serine dehydratase alpha chain LNQ40_009830 PF03315 Serine dehydratase beta chain LNQ40_009835 PF03471 Transporter associated domain LNQ40_009835 PF03741 Integral membrane protein TerC family LNQ40_009840 PF03610 PTS system fructose IIA component LNQ40_009840 PF03830 PTS system sorbose subfamily IIB component LNQ40_009845 PF03609 PTS system sorbose-specific iic component LNQ40_009850 PF03613 PTS system mannose/fructose/sorbose family IID component LNQ40_009855 PF06173 Protein of unknown function (DUF986) LNQ40_009860 PF02659 Putative manganese efflux pump LNQ40_009865 PF02441 Flavoprotein LNQ40_009880 PF02770 Acyl-CoA dehydrogenase, middle domain LNQ40_009880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNQ40_009880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNQ40_009890 PF05199 GMC oxidoreductase LNQ40_009890 PF00732 GMC oxidoreductase LNQ40_009895 PF00550 Phosphopantetheine attachment site LNQ40_009895 PF00668 Condensation domain LNQ40_009895 PF00501 AMP-binding enzyme LNQ40_009895 PF13193 AMP-binding enzyme C-terminal domain LNQ40_009900 PF07690 Major Facilitator Superfamily LNQ40_009920 PF13847 Methyltransferase domain LNQ40_009925 PF03717 Penicillin-binding Protein dimerisation domain LNQ40_009925 PF00905 Penicillin binding protein transpeptidase domain LNQ40_009930 PF02578 Multi-copper polyphenol oxidoreductase laccase LNQ40_009935 PF00313 'Cold-shock' DNA-binding domain LNQ40_009940 PF10736 Protein of unknown function (DUF2627) LNQ40_009945 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LNQ40_009950 PF00324 Amino acid permease LNQ40_009965 PF13974 YebO-like protein LNQ40_009970 PF13998 MgrB protein LNQ40_009975 PF13996 YobH-like protein LNQ40_009980 PF10964 Protein of unknown function (DUF2766) LNQ40_009985 PF12833 Helix-turn-helix domain LNQ40_010000 PF13520 Amino acid permease LNQ40_010005 PF00664 ABC transporter transmembrane region LNQ40_010005 PF00005 ABC transporter LNQ40_010015 PF01590 GAF domain LNQ40_010015 PF00360 Phytochrome region LNQ40_010015 PF00563 EAL domain LNQ40_010015 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_010020 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ40_010030 PF06411 HdeA/HdeB family LNQ40_010035 PF07478 D-ala D-ala ligase C-terminus LNQ40_010035 PF01820 D-ala D-ala ligase N-terminus LNQ40_010050 PF08241 Methyltransferase domain LNQ40_010055 PF00313 'Cold-shock' DNA-binding domain LNQ40_010060 PF00313 'Cold-shock' DNA-binding domain LNQ40_010065 PF00313 'Cold-shock' DNA-binding domain LNQ40_010075 PF04794 YdjC-like protein LNQ40_010080 PF07883 Cupin domain LNQ40_010080 PF12833 Helix-turn-helix domain LNQ40_010085 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LNQ40_010090 PF00232 Glycosyl hydrolase family 1 LNQ40_010095 PF02378 Phosphotransferase system, EIIC LNQ40_010100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ40_010105 PF00849 RNA pseudouridylate synthase LNQ40_010105 PF01479 S4 domain LNQ40_010120 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LNQ40_010125 PF03553 Na+/H+ antiporter family LNQ40_010135 PF13520 Amino acid permease LNQ40_010150 PF00849 RNA pseudouridylate synthase LNQ40_010155 PF00282 Pyridoxal-dependent decarboxylase conserved domain LNQ40_010160 PF13520 Amino acid permease LNQ40_010165 PF04960 Glutaminase LNQ40_010195 PF13673 Acetyltransferase (GNAT) domain LNQ40_010205 PF00034 Cytochrome c LNQ40_010205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LNQ40_010220 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_010225 PF00005 ABC transporter LNQ40_010235 PF00672 HAMP domain LNQ40_010235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ40_010235 PF02203 Tar ligand binding domain homologue LNQ40_010240 PF13276 HTH-like domain LNQ40_010240 PF00665 Integrase core domain LNQ40_010240 PF13333 Integrase core domain LNQ40_010295 PF02086 D12 class N6 adenine-specific DNA methyltransferase LNQ40_010300 PF05840 Bacteriophage replication gene A protein (GPA) LNQ40_010305 PF05840 Bacteriophage replication gene A protein (GPA) LNQ40_010360 PF02899 Phage integrase, N-terminal SAM-like domain LNQ40_010360 PF00589 Phage integrase family LNQ40_010365 PF12826 Helix-hairpin-helix motif LNQ40_010365 PF03120 NAD-dependent DNA ligase OB-fold domain LNQ40_010365 PF01653 NAD-dependent DNA ligase adenylation domain LNQ40_010365 PF00533 BRCA1 C Terminus (BRCT) domain LNQ40_010365 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LNQ40_010370 PF16452 Bacteriophage CI repressor C-terminal domain LNQ40_010370 PF07022 Bacteriophage CI repressor helix-turn-helix domain LNQ40_010380 PF06892 Phage regulatory protein CII (CP76) LNQ40_010400 PF05840 Bacteriophage replication gene A protein (GPA) LNQ40_010510 PF07484 Phage Tail Collar Domain LNQ40_010515 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ40_010555 PF04606 Ogr/Delta-like zinc finger LNQ40_010575 PF01066 CDP-alcohol phosphatidyltransferase LNQ40_010580 PF01541 GIY-YIG catalytic domain LNQ40_010580 PF02151 UvrB/uvrC motif LNQ40_010580 PF08459 UvrC Helix-hairpin-helix N-terminal LNQ40_010585 PF00072 Response regulator receiver domain LNQ40_010585 PF00196 Bacterial regulatory proteins, luxR family LNQ40_010590 PF10769 Protein of unknown function (DUF2594) LNQ40_010610 PF00324 Amino acid permease LNQ40_010615 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ40_010615 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ40_010615 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ40_010620 PF13520 Amino acid permease LNQ40_010625 PF18500 CadC C-terminal domain 1 LNQ40_010625 PF00486 Transcriptional regulatory protein, C terminal LNQ40_010630 PF00474 Sodium:solute symporter family LNQ40_010635 PF00171 Aldehyde dehydrogenase family LNQ40_010635 PF01619 Proline dehydrogenase LNQ40_010635 PF14850 DNA-binding domain of Proline dehydrogenase LNQ40_010635 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LNQ40_010640 PF00005 ABC transporter LNQ40_010645 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_010650 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_010655 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_010660 PF02899 Phage integrase, N-terminal SAM-like domain LNQ40_010665 PF04542 Sigma-70 region 2 LNQ40_010665 PF04539 Sigma-70 region 3 LNQ40_010665 PF04545 Sigma-70, region 4 LNQ40_010670 PF00700 Bacterial flagellin C-terminal helical region LNQ40_010670 PF08884 Flagellin D3 domain LNQ40_010670 PF00669 Bacterial flagellin N-terminal helical region LNQ40_010675 PF00669 Bacterial flagellin N-terminal helical region LNQ40_010675 PF00700 Bacterial flagellin C-terminal helical region LNQ40_010675 PF08884 Flagellin D3 domain LNQ40_010680 PF00700 Bacterial flagellin C-terminal helical region LNQ40_010680 PF08884 Flagellin D3 domain LNQ40_010680 PF00669 Bacterial flagellin N-terminal helical region LNQ40_010685 PF07196 Flagellin hook IN motif LNQ40_010685 PF07195 Flagellar hook-associated protein 2 C-terminus LNQ40_010685 PF02465 Flagellar hook-associated protein 2 N-terminus LNQ40_010690 PF02561 Flagellar protein FliS LNQ40_010695 PF05400 Flagellar protein FliT LNQ40_010700 PF12833 Helix-turn-helix domain LNQ40_010705 PF01966 HD domain LNQ40_010710 PF07885 Ion channel LNQ40_010710 PF02254 TrkA-N domain LNQ40_010715 PF01223 DNA/RNA non-specific endonuclease LNQ40_010725 PF02049 Flagellar hook-basal body complex protein FliE LNQ40_010730 PF01514 Secretory protein of YscJ/FliF family LNQ40_010730 PF08345 Flagellar M-ring protein C-terminal LNQ40_010735 PF14842 FliG N-terminal domain LNQ40_010735 PF14841 FliG middle domain LNQ40_010735 PF01706 FliG C-terminal domain LNQ40_010740 PF02108 Flagellar assembly protein FliH LNQ40_010745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ40_010745 PF18269 T3SS EscN ATPase C-terminal domain LNQ40_010750 PF02050 Flagellar FliJ protein LNQ40_010755 PF02120 Flagellar hook-length control protein FliK LNQ40_010760 PF03748 Flagellar basal body-associated protein FliL LNQ40_010765 PF02154 Flagellar motor switch protein FliM LNQ40_010765 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ40_010770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ40_010770 PF16973 Flagellar motor switch protein FliN N-terminal LNQ40_010775 PF04347 Flagellar biosynthesis protein, FliO LNQ40_010780 PF00813 FliP family LNQ40_010785 PF01313 Bacterial export proteins, family 3 LNQ40_010790 PF01311 Bacterial export proteins, family 1 LNQ40_010795 PF00669 Bacterial flagellin N-terminal helical region LNQ40_010800 PF00460 Flagella basal body rod protein LNQ40_010800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ40_010805 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LNQ40_010805 PF10135 Rod binding protein LNQ40_010810 PF02119 Flagellar P-ring protein LNQ40_010815 PF02107 Flagellar L-ring protein LNQ40_010820 PF00460 Flagella basal body rod protein LNQ40_010820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ40_010825 PF00460 Flagella basal body rod protein LNQ40_010825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ40_010830 PF07559 Flagellar basal body protein FlaE LNQ40_010830 PF00460 Flagella basal body rod protein LNQ40_010830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ40_010835 PF13861 FlgD Tudor-like domain LNQ40_010835 PF13860 FlgD Ig-like domain LNQ40_010835 PF03963 Flagellar hook capping protein - N-terminal region LNQ40_010840 PF00460 Flagella basal body rod protein LNQ40_010840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ40_010845 PF00460 Flagella basal body rod protein LNQ40_010850 PF13144 Chaperone for flagella basal body P-ring formation LNQ40_010850 PF17656 FlgA N-terminal domain LNQ40_010855 PF04316 Anti-sigma-28 factor, FlgM LNQ40_010860 PF05130 FlgN protein LNQ40_010865 PF06366 Flagellar protein FlhE LNQ40_010870 PF00771 FHIPEP family LNQ40_010875 PF01312 FlhB HrpN YscU SpaS Family LNQ40_010880 PF00082 Subtilase family LNQ40_010880 PF01483 Proprotein convertase P-domain LNQ40_010885 PF00196 Bacterial regulatory proteins, luxR family LNQ40_010895 PF00419 Fimbrial protein LNQ40_010900 PF00577 Outer membrane usher protein LNQ40_010900 PF13954 PapC N-terminal domain LNQ40_010900 PF13953 PapC C-terminal domain LNQ40_010905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ40_010905 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ40_010915 PF00419 Fimbrial protein LNQ40_010945 PF04344 Chemotaxis phosphatase, CheZ LNQ40_010950 PF00072 Response regulator receiver domain LNQ40_010955 PF00072 Response regulator receiver domain LNQ40_010955 PF01339 CheB methylesterase LNQ40_010960 PF01739 CheR methyltransferase, SAM binding domain LNQ40_010960 PF03705 CheR methyltransferase, all-alpha domain LNQ40_010965 PF00672 HAMP domain LNQ40_010965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ40_010965 PF02203 Tar ligand binding domain homologue LNQ40_010970 PF00672 HAMP domain LNQ40_010970 PF02203 Tar ligand binding domain homologue LNQ40_010970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ40_010975 PF01584 CheW-like domain LNQ40_010980 PF02895 Signal transducing histidine kinase, homodimeric domain LNQ40_010980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_010980 PF01627 Hpt domain LNQ40_010980 PF01584 CheW-like domain LNQ40_010980 PF09078 CheY binding LNQ40_010985 PF13677 Membrane MotB of proton-channel complex MotA/MotB LNQ40_010985 PF00691 OmpA family LNQ40_010990 PF01618 MotA/TolQ/ExbB proton channel family LNQ40_010995 PF05280 Flagellar transcriptional activator (FlhC) LNQ40_011000 PF05247 Flagellar transcriptional activator (FlhD) LNQ40_011005 PF00582 Universal stress protein family LNQ40_011010 PF02308 MgtC family LNQ40_011015 PF00672 HAMP domain LNQ40_011015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ40_011015 PF02203 Tar ligand binding domain homologue LNQ40_011020 PF10781 Dextransucrase DSRB LNQ40_011025 PF00313 'Cold-shock' DNA-binding domain LNQ40_011035 PF00356 Bacterial regulatory proteins, lacI family LNQ40_011040 PF16353 Domain of unknown function(DUF4981) LNQ40_011040 PF00703 Glycosyl hydrolases family 2 LNQ40_011040 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LNQ40_011040 PF02837 Glycosyl hydrolases family 2, sugar binding domain LNQ40_011040 PF02929 Beta galactosidase small chain LNQ40_011045 PF00698 Acyl transferase domain LNQ40_011045 PF08240 Alcohol dehydrogenase GroES-like domain LNQ40_011045 PF00107 Zinc-binding dehydrogenase LNQ40_011045 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ40_011045 PF14765 Polyketide synthase dehydratase LNQ40_011045 PF08659 KR domain LNQ40_011045 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ40_011045 PF16197 Ketoacyl-synthetase C-terminal extension LNQ40_011045 PF00550 Phosphopantetheine attachment site LNQ40_011050 PF10777 Inner membrane protein YlaC LNQ40_011060 PF14001 YdfZ protein LNQ40_011100 PF01024 Colicin pore forming domain LNQ40_011105 PF03526 Colicin E1 (microcin) immunity protein LNQ40_011125 PF13362 Toprim domain LNQ40_011125 PF08401 Domain of unknown function (DUF1738) LNQ40_011125 PF18818 Metallopeptidase superfamily domain LNQ40_011230 PF03245 Bacteriophage Rz lysis protein LNQ40_011235 PF00959 Phage lysozyme LNQ40_011240 PF04971 Bacteriophage P21 holin S LNQ40_011270 PF07102 Protein of unknown function (DUF1364) LNQ40_011290 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LNQ40_011290 PF17854 FtsK alpha domain LNQ40_011290 PF09397 Ftsk gamma domain LNQ40_011290 PF01580 FtsK/SpoIIIE family LNQ40_011325 PF00717 Peptidase S24-like LNQ40_011325 PF01381 Helix-turn-helix LNQ40_011390 PF06167 Glucose-regulated metallo-peptidase M90 LNQ40_011410 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LNQ40_011410 PF01648 4'-phosphopantetheinyl transferase superfamily LNQ40_011415 PF00939 Sodium:sulfate symporter transmembrane region LNQ40_011420 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LNQ40_011425 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase LNQ40_011430 PF04223 Citrate lyase, alpha subunit (CitF) LNQ40_011435 PF03328 HpcH/HpaI aldolase/citrate lyase family LNQ40_011440 PF06857 Malonate decarboxylase delta subunit (MdcD) LNQ40_011445 PF08218 Citrate lyase ligase C-terminal domain LNQ40_011450 PF17203 Single cache domain 3 LNQ40_011450 PF00989 PAS fold LNQ40_011450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_011450 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LNQ40_011455 PF00072 Response regulator receiver domain LNQ40_011455 PF12431 Transcriptional regulator LNQ40_011460 PF00196 Bacterial regulatory proteins, luxR family LNQ40_011460 PF00072 Response regulator receiver domain LNQ40_011465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_011465 PF07730 Histidine kinase LNQ40_011465 PF05231 MASE1 LNQ40_011470 PF07690 Major Facilitator Superfamily LNQ40_011480 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_011485 PF08402 TOBE domain LNQ40_011485 PF00005 ABC transporter LNQ40_011500 PF04363 Protein of unknown function (DUF496) LNQ40_011505 PF04632 Fusaric acid resistance protein family LNQ40_011515 PF08411 Exonuclease C-terminal LNQ40_011515 PF00929 Exonuclease LNQ40_011520 PF13520 Amino acid permease LNQ40_011525 PF00593 TonB dependent receptor LNQ40_011525 PF07715 TonB-dependent Receptor Plug Domain LNQ40_011530 PF00005 ABC transporter LNQ40_011535 PF01032 FecCD transport family LNQ40_011545 PF00324 Amino acid permease LNQ40_011550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_011550 PF03466 LysR substrate binding domain LNQ40_011560 PF03601 Conserved hypothetical protein 698 LNQ40_011565 PF01261 Xylose isomerase-like TIM barrel LNQ40_011570 PF02378 Phosphotransferase system, EIIC LNQ40_011570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ40_011575 PF00294 pfkB family carbohydrate kinase LNQ40_011580 PF00381 PTS HPr component phosphorylation site LNQ40_011580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ40_011585 PF00293 NUDIX domain LNQ40_011590 PF03264 NapC/NirT cytochrome c family, N-terminal region LNQ40_011595 PF01568 Molydopterin dinucleotide binding domain LNQ40_011595 PF18364 Molybdopterin oxidoreductase N-terminal domain LNQ40_011595 PF00384 Molybdopterin oxidoreductase LNQ40_011600 PF03692 Putative zinc- or iron-chelating domain LNQ40_011605 PF03222 Tryptophan/tyrosine permease family LNQ40_011615 PF01132 Elongation factor P (EF-P) OB domain LNQ40_011615 PF08207 Elongation factor P (EF-P) KOW-like domain LNQ40_011615 PF09285 Elongation factor P, C-terminal LNQ40_011620 PF03786 D-mannonate dehydratase (UxuA) LNQ40_011625 PF01232 Mannitol dehydrogenase Rossmann domain LNQ40_011625 PF08125 Mannitol dehydrogenase C-terminal domain LNQ40_011635 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNQ40_011635 PF07683 Cobalamin synthesis protein cobW C-terminal domain LNQ40_011640 PF01569 PAP2 superfamily LNQ40_011645 PF00877 NlpC/P60 family LNQ40_011650 PF12792 CSS motif domain associated with EAL LNQ40_011650 PF00563 EAL domain LNQ40_011655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ40_011660 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_011665 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_011665 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ40_011670 PF00005 ABC transporter LNQ40_011670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ40_011675 PF13989 YejG-like protein LNQ40_011680 PF07690 Major Facilitator Superfamily LNQ40_011685 PF01479 S4 domain LNQ40_011685 PF00849 RNA pseudouridylate synthase LNQ40_011690 PF04851 Type III restriction enzyme, res subunit LNQ40_011690 PF00271 Helicase conserved C-terminal domain LNQ40_011695 PF01386 Ribosomal L25p family LNQ40_011700 PF04245 37-kD nucleoid-associated bacterial protein LNQ40_011705 PF07208 Protein of unknown function (DUF1414) LNQ40_011710 PF11893 Domain of unknown function (DUF3413) LNQ40_011710 PF00884 Sulfatase LNQ40_011725 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ40_011735 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) LNQ40_011740 PF04865 Baseplate J-like protein LNQ40_011785 PF04984 Phage tail sheath protein subtilisin-like domain LNQ40_011785 PF17482 Phage tail sheath C-terminal domain LNQ40_011835 PF03354 Phage Terminase LNQ40_011855 PF03245 Bacteriophage Rz lysis protein LNQ40_011885 PF06147 Protein of unknown function (DUF968) LNQ40_011905 PF05869 DNA N-6-adenine-methyltransferase (Dam) LNQ40_011910 PF03354 Phage Terminase LNQ40_011935 PF01381 Helix-turn-helix LNQ40_011935 PF00717 Peptidase S24-like LNQ40_011955 PF10065 Uncharacterized conserved protein (DUF2303) LNQ40_011980 PF12697 Alpha/beta hydrolase family LNQ40_011980 PF08241 Methyltransferase domain LNQ40_012015 PF06183 DinI-like family LNQ40_012020 PF12706 Beta-lactamase superfamily domain LNQ40_012025 PF00144 Beta-lactamase LNQ40_012030 PF13302 Acetyltransferase (GNAT) domain LNQ40_012045 PF00267 Gram-negative porin LNQ40_012050 PF07690 Major Facilitator Superfamily LNQ40_012055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_012055 PF01627 Hpt domain LNQ40_012055 PF16359 RcsD-ABL domain LNQ40_012060 PF00196 Bacterial regulatory proteins, luxR family LNQ40_012060 PF00072 Response regulator receiver domain LNQ40_012065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_012065 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_012065 PF09456 RcsC Alpha-Beta-Loop (ABL) LNQ40_012065 PF00072 Response regulator receiver domain LNQ40_012070 PF03989 DNA gyrase C-terminal domain, beta-propeller LNQ40_012070 PF00521 DNA gyrase/topoisomerase IV, subunit A LNQ40_012080 PF03477 ATP cone domain LNQ40_012080 PF02867 Ribonucleotide reductase, barrel domain LNQ40_012080 PF00317 Ribonucleotide reductase, all-alpha domain LNQ40_012085 PF00268 Ribonucleotide reductase, small chain LNQ40_012090 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ40_012100 PF03974 Ecotin LNQ40_012105 PF00994 Probable molybdopterin binding domain LNQ40_012110 PF04138 GtrA-like protein LNQ40_012115 PF00535 Glycosyl transferase family 2 LNQ40_012125 PF03222 Tryptophan/tyrosine permease family LNQ40_012130 PF07437 YfaZ precursor LNQ40_012135 PF00199 Catalase LNQ40_012135 PF06628 Catalase-related immune-responsive LNQ40_012140 PF00501 AMP-binding enzyme LNQ40_012140 PF13193 AMP-binding enzyme C-terminal domain LNQ40_012145 PF13378 Enolase C-terminal domain-like LNQ40_012150 PF00378 Enoyl-CoA hydratase/isomerase LNQ40_012155 PF12697 Alpha/beta hydrolase family LNQ40_012160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ40_012160 PF16582 Middle domain of thiamine pyrophosphate LNQ40_012160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ40_012165 PF00425 chorismate binding enzyme LNQ40_012170 PF05957 Bacterial protein of unknown function (DUF883) LNQ40_012175 PF06496 Protein of unknown function (DUF1097) LNQ40_012180 PF00361 Proton-conducting membrane transporter LNQ40_012185 PF00361 Proton-conducting membrane transporter LNQ40_012190 PF00361 Proton-conducting membrane transporter LNQ40_012190 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LNQ40_012195 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LNQ40_012200 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LNQ40_012205 PF12838 4Fe-4S dicluster domain LNQ40_012210 PF00146 NADH dehydrogenase LNQ40_012215 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LNQ40_012215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ40_012215 PF00384 Molybdopterin oxidoreductase LNQ40_012215 PF01568 Molydopterin dinucleotide binding domain LNQ40_012220 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNQ40_012220 PF10531 SLBB domain LNQ40_012220 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNQ40_012230 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LNQ40_012230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LNQ40_012235 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LNQ40_012240 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LNQ40_012245 PF03466 LysR substrate binding domain LNQ40_012245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_012250 PF00155 Aminotransferase class I and II LNQ40_012260 PF03600 Citrate transporter LNQ40_012260 PF02080 TrkA-C domain LNQ40_012270 PF03887 YfbU domain LNQ40_012275 PF04217 Protein of unknown function, DUF412 LNQ40_012280 PF00871 Acetokinase family LNQ40_012285 PF07085 DRTGG domain LNQ40_012285 PF01515 Phosphate acetyl/butaryl transferase LNQ40_012290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ40_012290 PF00356 Bacterial regulatory proteins, lacI family LNQ40_012295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ40_012305 PF03611 PTS system sugar-specific permease component LNQ40_012310 PF00293 NUDIX domain LNQ40_012315 PF12850 Calcineurin-like phosphoesterase superfamily domain LNQ40_012325 PF00043 Glutathione S-transferase, C-terminal domain LNQ40_012325 PF02798 Glutathione S-transferase, N-terminal domain LNQ40_012330 PF08338 Domain of unknown function (DUF1731) LNQ40_012330 PF01370 NAD dependent epimerase/dehydratase family LNQ40_012335 PF00005 ABC transporter LNQ40_012340 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_012345 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_012350 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_012360 PF02441 Flavoprotein LNQ40_012365 PF00156 Phosphoribosyl transferase domain LNQ40_012370 PF02674 Colicin V production protein LNQ40_012375 PF05036 Sporulation related domain LNQ40_012380 PF02875 Mur ligase family, glutamate ligase domain LNQ40_012380 PF08245 Mur ligase middle domain LNQ40_012385 PF01039 Carboxyl transferase domain LNQ40_012385 PF17848 Acetyl-coA carboxylase zinc finger domain LNQ40_012390 PF09335 SNARE associated Golgi protein LNQ40_012395 PF01416 tRNA pseudouridine synthase LNQ40_012400 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ40_012400 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ40_012405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ40_012405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ40_012405 PF11890 Domain of unknown function (DUF3410) LNQ40_012425 PF00155 Aminotransferase class I and II LNQ40_012430 PF00578 AhpC/TSA family LNQ40_012460 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ40_012460 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ40_012465 PF01266 FAD dependent oxidoreductase LNQ40_012465 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LNQ40_012470 PF08891 YfcL protein LNQ40_012475 PF04315 Elongation factor P hydroxylase LNQ40_012480 PF01925 Sulfite exporter TauE/SafE LNQ40_012485 PF03411 Penicillin-insensitive murein endopeptidase LNQ40_012490 PF01264 Chorismate synthase LNQ40_012495 PF05175 Methyltransferase small domain LNQ40_012500 PF01713 Smr domain LNQ40_012505 PF00300 Histidine phosphatase superfamily (branch 1) LNQ40_012510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNQ40_012510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNQ40_012510 PF00378 Enoyl-CoA hydratase/isomerase LNQ40_012515 PF02803 Thiolase, C-terminal domain LNQ40_012515 PF00108 Thiolase, N-terminal domain LNQ40_012520 PF04175 Protein of unknown function (DUF406) LNQ40_012525 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LNQ40_012530 PF04333 MlaA lipoprotein LNQ40_012535 PF03918 Cytochrome C biogenesis protein LNQ40_012540 PF03918 Cytochrome C biogenesis protein LNQ40_012545 PF08534 Redoxin LNQ40_012550 PF01578 Cytochrome C assembly protein LNQ40_012550 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LNQ40_012555 PF03100 CcmE LNQ40_012560 PF04995 Heme exporter protein D (CcmD) LNQ40_012565 PF01578 Cytochrome C assembly protein LNQ40_012570 PF03379 CcmB protein LNQ40_012575 PF00005 ABC transporter LNQ40_012590 PF03831 PhnA domain LNQ40_012590 PF08274 PhnA Zinc-Ribbon LNQ40_012595 PF13406 Transglycosylase SLT domain LNQ40_012610 PF01292 Prokaryotic cytochrome b561 LNQ40_012615 PF00155 Aminotransferase class I and II LNQ40_012620 PF07350 Protein of unknown function (DUF1479) LNQ40_012625 PF07694 5TMR of 5TMR-LYT LNQ40_012625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_012625 PF06580 Histidine kinase LNQ40_012635 PF00239 Resolvase, N terminal domain LNQ40_012635 PF02796 Helix-turn-helix domain of resolvase LNQ40_012645 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ40_012650 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ40_012705 PF04984 Phage tail sheath protein subtilisin-like domain LNQ40_012705 PF17482 Phage tail sheath C-terminal domain LNQ40_012730 PF10124 Mu-like prophage major head subunit gpT LNQ40_012755 PF06074 Protein of unknown function (DUF935) LNQ40_012810 PF06252 Protein of unknown function (DUF1018) LNQ40_012875 PF13693 Winged helix-turn-helix DNA-binding LNQ40_012890 PF07690 Major Facilitator Superfamily LNQ40_012895 PF02685 Glucokinase LNQ40_012905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_012905 PF03466 LysR substrate binding domain LNQ40_012915 PF01566 Natural resistance-associated macrophage protein LNQ40_012920 PF07670 Nucleoside recognition LNQ40_012920 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ40_012920 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ40_012965 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ40_012995 PF12843 Putative quorum-sensing-regulated virulence factor LNQ40_013000 PF01653 NAD-dependent DNA ligase adenylation domain LNQ40_013000 PF03120 NAD-dependent DNA ligase OB-fold domain LNQ40_013000 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LNQ40_013000 PF12826 Helix-hairpin-helix motif LNQ40_013000 PF00533 BRCA1 C Terminus (BRCT) domain LNQ40_013005 PF04354 ZipA, C-terminal FtsZ-binding domain LNQ40_013015 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_013020 PF00381 PTS HPr component phosphorylation site LNQ40_013025 PF05524 PEP-utilising enzyme, N-terminal LNQ40_013025 PF00391 PEP-utilising enzyme, mobile domain LNQ40_013025 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ40_013030 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LNQ40_013035 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_013040 PF00005 ABC transporter LNQ40_013045 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_013050 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_013060 PF07690 Major Facilitator Superfamily LNQ40_013065 PF01418 Helix-turn-helix domain, rpiR family LNQ40_013065 PF01380 SIS domain LNQ40_013070 PF04074 YhcH/YjgK/YiaL LNQ40_013075 PF00480 ROK family LNQ40_013080 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LNQ40_013085 PF00701 Dihydrodipicolinate synthetase family LNQ40_013090 PF04261 Dyp-type peroxidase family LNQ40_013095 PF06572 Protein of unknown function (DUF1131) LNQ40_013100 PF04076 Bacterial OB fold (BOF) protein LNQ40_013160 PF00004 ATPase family associated with various cellular activities (AAA) LNQ40_013160 PF06480 FtsH Extracellular LNQ40_013160 PF01434 Peptidase family M41 LNQ40_013160 PF17862 AAA+ lid domain LNQ40_013165 PF00589 Phage integrase family LNQ40_013175 PF00583 Acetyltransferase (GNAT) family LNQ40_013180 PF01218 Coproporphyrinogen III oxidase LNQ40_013185 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LNQ40_013190 PF00390 Malic enzyme, N-terminal domain LNQ40_013190 PF03949 Malic enzyme, NAD binding domain LNQ40_013190 PF01515 Phosphate acetyl/butaryl transferase LNQ40_013195 PF00293 NUDIX domain LNQ40_013200 PF03264 NapC/NirT cytochrome c family, N-terminal region LNQ40_013205 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LNQ40_013210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ40_013210 PF01568 Molydopterin dinucleotide binding domain LNQ40_013210 PF00384 Molybdopterin oxidoreductase LNQ40_013210 PF10518 TAT (twin-arginine translocation) pathway signal sequence LNQ40_013215 PF03927 NapD protein LNQ40_013220 PF00037 4Fe-4S binding domain LNQ40_013220 PF12800 4Fe-4S binding domain LNQ40_013220 PF13187 4Fe-4S dicluster domain LNQ40_013225 PF00196 Bacterial regulatory proteins, luxR family LNQ40_013225 PF00072 Response regulator receiver domain LNQ40_013235 PF00873 AcrB/AcrD/AcrF family LNQ40_013245 PF01817 Chorismate mutase type II LNQ40_013250 PF03960 ArsC family LNQ40_013255 PF07687 Peptidase dimerisation domain LNQ40_013255 PF01546 Peptidase family M20/M25/M40 LNQ40_013260 PF02557 D-alanyl-D-alanine carboxypeptidase LNQ40_013265 PF13980 Uncharacterised protein family (UPF0370) LNQ40_013270 PF02230 Phospholipase/Carboxylesterase LNQ40_013275 PF13718 GNAT acetyltransferase 2 LNQ40_013275 PF17176 tRNA-binding domain LNQ40_013275 PF08351 Domain of unknown function (DUF1726) LNQ40_013275 PF05127 Helicase LNQ40_013280 PF04284 Protein of unknown function (DUF441) LNQ40_013285 PF01259 SAICAR synthetase LNQ40_013290 PF06804 NlpB/DapX lipoprotein LNQ40_013295 PF00701 Dihydrodipicolinate synthetase family LNQ40_013300 PF01842 ACT domain LNQ40_013305 PF00578 AhpC/TSA family LNQ40_013310 PF01594 AI-2E family transporter LNQ40_013315 PF07720 Tetratricopeptide repeat LNQ40_013315 PF01435 Peptidase family M48 LNQ40_013320 PF03960 ArsC family LNQ40_013325 PF00308 Bacterial dnaA protein LNQ40_013330 PF00860 Permease family LNQ40_013340 PF00586 AIR synthase related protein, N-terminal domain LNQ40_013340 PF02769 AIR synthase related protein, C-terminal domain LNQ40_013345 PF00551 Formyl transferase LNQ40_013350 PF13302 Acetyltransferase (GNAT) domain LNQ40_013355 PF00005 ABC transporter LNQ40_013360 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_013365 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_013370 PF17941 Polyphosphate kinase C-terminal domain 1 LNQ40_013370 PF13090 Polyphosphate kinase C-terminal domain 2 LNQ40_013370 PF13089 Polyphosphate kinase N-terminal domain LNQ40_013370 PF02503 Polyphosphate kinase middle domain LNQ40_013375 PF02541 Ppx/GppA phosphatase family LNQ40_013385 PF00571 CBS domain LNQ40_013385 PF03448 MgtE intracellular N domain LNQ40_013385 PF01769 Divalent cation transporter LNQ40_013390 PF00012 Hsp70 protein LNQ40_013400 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ40_013400 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ40_013405 PF13953 PapC C-terminal domain LNQ40_013405 PF13954 PapC N-terminal domain LNQ40_013405 PF00577 Outer membrane usher protein LNQ40_013425 PF13533 Biotin-lipoyl like LNQ40_013430 PF00873 AcrB/AcrD/AcrF family LNQ40_013435 PF00873 AcrB/AcrD/AcrF family LNQ40_013440 PF07690 Major Facilitator Superfamily LNQ40_013445 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_013445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_013445 PF00672 HAMP domain LNQ40_013450 PF00072 Response regulator receiver domain LNQ40_013450 PF00486 Transcriptional regulatory protein, C terminal LNQ40_013455 PF07411 Domain of unknown function (DUF1508) LNQ40_013460 PF16325 Peptidase family U32 C-terminal domain LNQ40_013460 PF01136 Peptidase family U32 LNQ40_013465 PF00781 Diacylglycerol kinase catalytic domain LNQ40_013480 PF08543 Phosphomethylpyrimidine kinase LNQ40_013490 PF00958 GMP synthase C terminal domain LNQ40_013490 PF02540 NAD synthase LNQ40_013490 PF00117 Glutamine amidotransferase class-I LNQ40_013495 PF00478 IMP dehydrogenase / GMP reductase domain LNQ40_013495 PF00571 CBS domain LNQ40_013500 PF02601 Exonuclease VII, large subunit LNQ40_013500 PF13742 OB-fold nucleic acid binding domain LNQ40_013505 PF07191 zinc-ribbons LNQ40_013510 PF01926 50S ribosome-binding GTPase LNQ40_013510 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LNQ40_013515 PF13360 PQQ-like domain LNQ40_013520 PF09976 Tetratricopeptide repeat-like domain LNQ40_013525 PF03129 Anticodon binding domain LNQ40_013525 PF13393 Histidyl-tRNA synthetase LNQ40_013530 PF04551 GcpE protein LNQ40_013535 PF13464 Domain of unknown function (DUF4115) LNQ40_013545 PF04055 Radical SAM superfamily LNQ40_013550 PF00334 Nucleoside diphosphate kinase LNQ40_013560 PF06832 Penicillin-Binding Protein C-terminus Family LNQ40_013560 PF00905 Penicillin binding protein transpeptidase domain LNQ40_013560 PF00912 Transglycosylase LNQ40_013565 PF17962 Bacterial macroglobulin domain 6 LNQ40_013565 PF07703 Alpha-2-macroglobulin bait region domain LNQ40_013565 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LNQ40_013565 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LNQ40_013565 PF07678 A-macroglobulin TED domain LNQ40_013565 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LNQ40_013565 PF01835 MG2 domain LNQ40_013565 PF00207 Alpha-2-macroglobulin family LNQ40_013565 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LNQ40_013575 PF12404 Peptidase LNQ40_013575 PF00883 Cytosol aminopeptidase family, catalytic domain LNQ40_013580 PF04384 Iron-sulphur cluster assembly LNQ40_013585 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ40_013590 PF00012 Hsp70 protein LNQ40_013595 PF00226 DnaJ domain LNQ40_013595 PF07743 HSCB C-terminal oligomerisation domain LNQ40_013600 PF01521 Iron-sulphur cluster biosynthesis LNQ40_013605 PF01592 NifU-like N terminal domain LNQ40_013610 PF00266 Aminotransferase class-V LNQ40_013615 PF02082 Transcriptional regulator LNQ40_013620 PF00588 SpoU rRNA Methylase family LNQ40_013625 PF00459 Inositol monophosphatase family LNQ40_013630 PF03824 High-affinity nickel-transport protein LNQ40_013635 PF06226 Protein of unknown function (DUF1007) LNQ40_013640 PF00874 PRD domain LNQ40_013645 PF12832 MFS_1 like family LNQ40_013650 PF00464 Serine hydroxymethyltransferase LNQ40_013655 PF00970 Oxidoreductase FAD-binding domain LNQ40_013655 PF00042 Globin LNQ40_013655 PF00175 Oxidoreductase NAD-binding domain LNQ40_013660 PF14502 Helix-turn-helix domain LNQ40_013660 PF14503 YhfZ C-terminal domain LNQ40_013670 PF01168 Alanine racemase, N-terminal domain LNQ40_013675 PF02126 Phosphotriesterase family LNQ40_013680 PF10941 Protein of unknown function DUF2620 LNQ40_013685 PF10797 Protein of unknown function LNQ40_013690 PF00543 Nitrogen regulatory protein P-II LNQ40_013695 PF00795 Carbon-nitrogen hydrolase LNQ40_013695 PF02540 NAD synthase LNQ40_013700 PF00072 Response regulator receiver domain LNQ40_013700 PF00158 Sigma-54 interaction domain LNQ40_013705 PF13942 YfhG lipoprotein LNQ40_013710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_013710 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_013720 PF02769 AIR synthase related protein, C-terminal domain LNQ40_013720 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LNQ40_013720 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LNQ40_013725 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_013725 PF01464 Transglycosylase SLT domain LNQ40_013730 PF14437 MafB19-like deaminase LNQ40_013740 PF00367 phosphotransferase system, EIIB LNQ40_013740 PF02378 Phosphotransferase system, EIIC LNQ40_013745 PF01380 SIS domain LNQ40_013750 PF01418 Helix-turn-helix domain, rpiR family LNQ40_013750 PF01380 SIS domain LNQ40_013755 PF12838 4Fe-4S dicluster domain LNQ40_013760 PF01648 4'-phosphopantetheinyl transferase superfamily LNQ40_013765 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LNQ40_013770 PF02565 Recombination protein O C terminal LNQ40_013770 PF11967 Recombination protein O N terminal LNQ40_013775 PF07650 KH domain LNQ40_013775 PF01926 50S ribosome-binding GTPase LNQ40_013780 PF00035 Double-stranded RNA binding motif LNQ40_013780 PF14622 Ribonuclease-III-like LNQ40_013785 PF10502 Signal peptidase, peptidase S26 LNQ40_013790 PF06421 GTP-binding protein LepA C-terminus LNQ40_013790 PF00009 Elongation factor Tu GTP binding domain LNQ40_013790 PF00679 Elongation factor G C-terminus LNQ40_013790 PF03144 Elongation factor Tu domain 2 LNQ40_013800 PF03888 MucB/RseB N-terminal domain LNQ40_013800 PF17188 MucB/RseB C-terminal domain LNQ40_013805 PF03873 Anti sigma-E protein RseA, C-terminal domain LNQ40_013805 PF03872 Anti sigma-E protein RseA, N-terminal domain LNQ40_013810 PF04542 Sigma-70 region 2 LNQ40_013810 PF08281 Sigma-70, region 4 LNQ40_013815 PF00890 FAD binding domain LNQ40_013815 PF02910 Fumarate reductase flavoprotein C-term LNQ40_013820 PF05175 Methyltransferase small domain LNQ40_013825 PF00270 DEAD/DEAH box helicase LNQ40_013825 PF00271 Helicase conserved C-terminal domain LNQ40_013830 PF12796 Ankyrin repeats (3 copies) LNQ40_013840 PF01228 Glycine radical LNQ40_013845 PF03167 Uracil DNA glycosylase superfamily LNQ40_013850 PF01025 GrpE LNQ40_013855 PF01513 ATP-NAD kinase LNQ40_013860 PF02463 RecF/RecN/SMC N terminal domain LNQ40_013865 PF04355 SmpA / OmlA family LNQ40_013870 PF03658 RnfH family Ubiquitin LNQ40_013875 PF03364 Polyketide cyclase / dehydrase and lipid transport LNQ40_013880 PF01668 SmpB protein LNQ40_013890 PF13356 Arm DNA-binding domain LNQ40_013890 PF00589 Phage integrase family LNQ40_013895 PF03793 PASTA domain LNQ40_013895 PF00069 Protein kinase domain LNQ40_013900 PF00069 Protein kinase domain LNQ40_013900 PF03793 PASTA domain LNQ40_013925 PF05930 Prophage CP4-57 regulatory protein (AlpA) LNQ40_013960 PF06067 Domain of unknown function (DUF932) LNQ40_013965 PF04002 RadC-like JAB domain LNQ40_013970 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LNQ40_013980 PF00271 Helicase conserved C-terminal domain LNQ40_013995 PF00571 CBS domain LNQ40_013995 PF01380 SIS domain LNQ40_014000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNQ40_014000 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNQ40_014010 PF02653 Branched-chain amino acid transport system / permease component LNQ40_014015 PF00005 ABC transporter LNQ40_014025 PF00561 alpha/beta hydrolase fold LNQ40_014030 PF03466 LysR substrate binding domain LNQ40_014030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_014035 PF02652 L-lactate permease LNQ40_014040 PF01070 FMN-dependent dehydrogenase LNQ40_014045 PF06039 Malate:quinone oxidoreductase (Mqo) LNQ40_014050 PF00313 'Cold-shock' DNA-binding domain LNQ40_014060 PF06711 Protein of unknown function (DUF1198) LNQ40_014065 PF09400 Protein of unknown function (DUF2002) LNQ40_014080 PF07972 NrdI Flavodoxin like LNQ40_014085 PF02867 Ribonucleotide reductase, barrel domain LNQ40_014085 PF00317 Ribonucleotide reductase, all-alpha domain LNQ40_014085 PF08343 Ribonucleotide reductase N-terminal LNQ40_014090 PF00268 Ribonucleotide reductase, small chain LNQ40_014095 PF00005 ABC transporter LNQ40_014095 PF00571 CBS domain LNQ40_014100 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_014105 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LNQ40_014115 PF07690 Major Facilitator Superfamily LNQ40_014120 PF01047 MarR family LNQ40_014130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ40_014130 PF00529 HlyD membrane-fusion protein of T1SS LNQ40_014135 PF07690 Major Facilitator Superfamily LNQ40_014140 PF00588 SpoU rRNA Methylase family LNQ40_014140 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNQ40_014145 PF00085 Thioredoxin LNQ40_014150 PF03942 DTW domain LNQ40_014155 PF00583 Acetyltransferase (GNAT) family LNQ40_014155 PF13607 Succinyl-CoA ligase like flavodoxin domain LNQ40_014155 PF13380 CoA binding domain LNQ40_014160 PF13091 PLD-like domain LNQ40_014165 PF10043 Predicted periplasmic lipoprotein (DUF2279) LNQ40_014195 PF00005 ABC transporter LNQ40_014195 PF09383 NIL domain LNQ40_014200 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_014205 PF03180 NLPA lipoprotein LNQ40_014210 PF16358 RcsF lipoprotein LNQ40_014215 PF18389 TrmO C-terminal domain LNQ40_014215 PF01980 tRNA-methyltransferase O LNQ40_014220 PF03129 Anticodon binding domain LNQ40_014220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ40_014220 PF04073 Aminoacyl-tRNA editing domain LNQ40_014225 PF04170 NlpE N-terminal domain LNQ40_014225 PF17185 NlpE C-terminal OB domain LNQ40_014230 PF00472 RF-1 domain LNQ40_014235 PF07152 YaeQ protein LNQ40_014240 PF06786 Uncharacterised protein family (UPF0253) LNQ40_014245 PF07073 Modulator of Rho-dependent transcription termination (ROF) LNQ40_014250 PF00034 Cytochrome c LNQ40_014255 PF09179 TilS substrate binding domain LNQ40_014255 PF01171 PP-loop family LNQ40_014255 PF11734 TilS substrate C-terminal domain LNQ40_014260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNQ40_014275 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LNQ40_014280 PF07733 Bacterial DNA polymerase III alpha NTPase domain LNQ40_014280 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LNQ40_014280 PF14579 Helix-hairpin-helix motif LNQ40_014280 PF02811 PHP domain LNQ40_014280 PF01336 OB-fold nucleic acid binding domain LNQ40_014285 PF01351 Ribonuclease HII LNQ40_014290 PF02684 Lipid-A-disaccharide synthetase LNQ40_014295 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LNQ40_014295 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ40_014300 PF07977 FabA-like domain LNQ40_014305 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LNQ40_014305 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ40_014310 PF03938 Outer membrane protein (OmpH-like) LNQ40_014315 PF01103 Surface antigen LNQ40_014315 PF07244 Surface antigen variable number repeat LNQ40_014320 PF17820 PDZ domain LNQ40_014320 PF02163 Peptidase family M50 LNQ40_014330 PF01255 Putative undecaprenyl diphosphate synthase LNQ40_014335 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LNQ40_014335 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LNQ40_014335 PF13288 DXP reductoisomerase C-terminal domain LNQ40_014340 PF01765 Ribosome recycling factor LNQ40_014345 PF00696 Amino acid kinase family LNQ40_014350 PF00889 Elongation factor TS LNQ40_014355 PF00318 Ribosomal protein S2 LNQ40_014365 PF00557 Metallopeptidase family M24 LNQ40_014370 PF01842 ACT domain LNQ40_014370 PF01909 Nucleotidyltransferase domain LNQ40_014370 PF08335 GlnD PII-uridylyltransferase LNQ40_014370 PF01966 HD domain LNQ40_014375 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ40_014375 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LNQ40_014375 PF14602 Hexapeptide repeat of succinyl-transferase LNQ40_014380 PF11944 Protein of unknown function (DUF3461) LNQ40_014385 PF00258 Flavodoxin LNQ40_014390 PF00849 RNA pseudouridylate synthase LNQ40_014395 PF04287 tRNA pseudouridine synthase C LNQ40_014400 PF07348 Syd protein (SUKH-2) LNQ40_014405 PF14489 QueF-like protein LNQ40_014405 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LNQ40_014410 PF11892 Domain of unknown function (DUF3412) LNQ40_014410 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LNQ40_014410 PF03641 Possible lysine decarboxylase LNQ40_014415 PF01367 5'-3' exonuclease, C-terminal SAM fold LNQ40_014415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNQ40_014420 PF01728 FtsJ-like methyltransferase LNQ40_014420 PF18125 RlmM ferredoxin-like domain LNQ40_014425 PF04241 Protein of unknown function (DUF423) LNQ40_014430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_014430 PF03466 LysR substrate binding domain LNQ40_014435 PF06004 Bacterial protein of unknown function (DUF903) LNQ40_014440 PF00266 Aminotransferase class-V LNQ40_014445 PF02657 Fe-S metabolism associated domain LNQ40_014450 PF00899 ThiF family LNQ40_014455 PF06725 3D domain LNQ40_014455 PF03562 MltA specific insert domain LNQ40_014475 PF01520 N-acetylmuramoyl-L-alanine amidase LNQ40_014475 PF11741 AMIN domain LNQ40_014480 PF00583 Acetyltransferase (GNAT) family LNQ40_014480 PF00696 Amino acid kinase family LNQ40_014485 PF13538 UvrD-like helicase C-terminal domain LNQ40_014490 PF00580 UvrD/REP helicase N-terminal domain LNQ40_014490 PF13361 UvrD-like helicase C-terminal domain LNQ40_014490 PF12705 PD-(D/E)XK nuclease superfamily LNQ40_014495 PF00675 Insulinase (Peptidase family M16) LNQ40_014495 PF05193 Peptidase M16 inactive domain LNQ40_014495 PF16187 Middle or third domain of peptidase_M16 LNQ40_014500 PF17946 RecC C-terminal domain LNQ40_014505 PF12528 Type II secretion prepilin peptidase dependent protein C LNQ40_014505 PF07963 Prokaryotic N-terminal methylation motif LNQ40_014525 PF00303 Thymidylate synthase LNQ40_014530 PF01790 Prolipoprotein diacylglyceryl transferase LNQ40_014535 PF01590 GAF domain LNQ40_014535 PF05524 PEP-utilising enzyme, N-terminal LNQ40_014535 PF00391 PEP-utilising enzyme, mobile domain LNQ40_014535 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ40_014540 PF00293 NUDIX domain LNQ40_014545 PF02976 DNA mismatch repair enzyme MutH LNQ40_014550 PF03741 Integral membrane protein TerC family LNQ40_014555 PF00248 Aldo/keto reductase family LNQ40_014560 PF07690 Major Facilitator Superfamily LNQ40_014565 PF01553 Acyltransferase LNQ40_014565 PF00501 AMP-binding enzyme LNQ40_014565 PF13193 AMP-binding enzyme C-terminal domain LNQ40_014570 PF00356 Bacterial regulatory proteins, lacI family LNQ40_014575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNQ40_014575 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LNQ40_014580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_014580 PF03466 LysR substrate binding domain LNQ40_014585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_014585 PF03466 LysR substrate binding domain LNQ40_014625 PF07963 Prokaryotic N-terminal methylation motif LNQ40_014625 PF11612 Type II secretion system (T2SS), protein J LNQ40_014630 PF02501 Type II secretion system (T2SS), protein I LNQ40_014630 PF07963 Prokaryotic N-terminal methylation motif LNQ40_014640 PF08334 Type II secretion system (T2SS), protein G LNQ40_014640 PF07963 Prokaryotic N-terminal methylation motif LNQ40_014645 PF00482 Type II secretion system (T2SS), protein F LNQ40_014650 PF00437 Type II/IV secretion system protein LNQ40_014655 PF00263 Bacterial type II and III secretion system protein LNQ40_014655 PF03958 Bacterial type II/III secretion system short domain LNQ40_014680 PF00005 ABC transporter LNQ40_014685 PF02405 Permease MlaE LNQ40_014695 PF01336 OB-fold nucleic acid binding domain LNQ40_014695 PF00152 tRNA synthetases class II (D, K and N) LNQ40_014705 PF01368 DHH family LNQ40_014705 PF17768 RecJ OB domain LNQ40_014705 PF02272 DHHA1 domain LNQ40_014710 PF10411 Disulfide bond isomerase protein N-terminus LNQ40_014710 PF13098 Thioredoxin-like domain LNQ40_014715 PF02899 Phage integrase, N-terminal SAM-like domain LNQ40_014715 PF00589 Phage integrase family LNQ40_014720 PF00258 Flavodoxin LNQ40_014725 PF07254 Membrane-bound toxin component of toxin-antitoxin system LNQ40_014730 PF03937 Flavinator of succinate dehydrogenase LNQ40_014735 PF01571 Aminomethyltransferase folate-binding domain LNQ40_014740 PF03006 Haemolysin-III related LNQ40_014750 PF02347 Glycine cleavage system P-protein LNQ40_014755 PF01597 Glycine cleavage H-protein LNQ40_014760 PF01571 Aminomethyltransferase folate-binding domain LNQ40_014760 PF08669 Glycine cleavage T-protein C-terminal barrel domain LNQ40_014765 PF01494 FAD binding domain LNQ40_014770 PF01494 FAD binding domain LNQ40_014775 PF05195 Aminopeptidase P, N-terminal domain LNQ40_014775 PF00557 Metallopeptidase family M24 LNQ40_014780 PF03695 Uncharacterised protein family (UPF0149) LNQ40_014785 PF05164 Cell division protein ZapA LNQ40_014795 PF01812 5-formyltetrahydrofolate cyclo-ligase family LNQ40_014800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ40_014800 PF01842 ACT domain LNQ40_014800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ40_014805 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LNQ40_014810 PF03466 LysR substrate binding domain LNQ40_014810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_014815 PF04402 Protein of unknown function (DUF541) LNQ40_014820 PF01810 LysE type translocator LNQ40_014825 PF00924 Mechanosensitive ion channel LNQ40_014825 PF05552 Conserved TM helix LNQ40_014830 PF01116 Fructose-bisphosphate aldolase class-II LNQ40_014835 PF00162 Phosphoglycerate kinase LNQ40_014840 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LNQ40_014840 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LNQ40_014845 PF02780 Transketolase, C-terminal domain LNQ40_014845 PF00456 Transketolase, thiamine diphosphate binding domain LNQ40_014845 PF02779 Transketolase, pyrimidine binding domain LNQ40_014855 PF17810 Arginine decarboxylase helical bundle domain LNQ40_014855 PF17944 Arginine decarboxylase C-terminal helical extension LNQ40_014855 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNQ40_014860 PF00438 S-adenosylmethionine synthetase, N-terminal domain LNQ40_014860 PF02773 S-adenosylmethionine synthetase, C-terminal domain LNQ40_014860 PF02772 S-adenosylmethionine synthetase, central domain LNQ40_014870 PF04143 Sulphur transport LNQ40_014880 PF10263 SprT-like family LNQ40_014880 PF17283 SprT-like zinc ribbon domain LNQ40_014885 PF04231 Endonuclease I LNQ40_014890 PF04452 RNA methyltransferase LNQ40_014895 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LNQ40_014895 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LNQ40_014900 PF02622 Uncharacterized ACR, COG1678 LNQ40_014905 PF03652 Holliday junction resolvase LNQ40_014910 PF00795 Carbon-nitrogen hydrolase LNQ40_014915 PF04371 Porphyromonas-type peptidyl-arginine deiminase LNQ40_014920 PF00437 Type II/IV secretion system protein LNQ40_014925 PF01168 Alanine racemase, N-terminal domain LNQ40_014930 PF14748 Pyrroline-5-carboxylate reductase dimerisation LNQ40_014930 PF03807 NADP oxidoreductase coenzyme F420-dependent LNQ40_014935 PF02325 YGGT family LNQ40_014940 PF02594 Uncharacterised ACR, YggU family COG1872 LNQ40_014945 PF01725 Ham1 family LNQ40_014950 PF06969 HemN C-terminal domain LNQ40_014950 PF04055 Radical SAM superfamily LNQ40_014955 PF11101 Protein of unknown function (DUF2884) LNQ40_014960 PF04960 Glutaminase LNQ40_014965 PF04320 Protein with unknown function (DUF469) LNQ40_014970 PF02390 Putative methyltransferase LNQ40_014975 PF10576 Iron-sulfur binding domain of endonuclease III LNQ40_014975 PF00633 Helix-hairpin-helix motif LNQ40_014975 PF00730 HhH-GPD superfamily base excision DNA repair protein LNQ40_014975 PF14815 NUDIX domain LNQ40_014980 PF04362 Bacterial Fe(2+) trafficking LNQ40_014985 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LNQ40_014985 PF01464 Transglycosylase SLT domain LNQ40_015020 PF00294 pfkB family carbohydrate kinase LNQ40_015030 PF01228 Glycine radical LNQ40_015030 PF02901 Pyruvate formate lyase-like LNQ40_015035 PF00871 Acetokinase family LNQ40_015040 PF01490 Transmembrane amino acid transporter protein LNQ40_015045 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_015050 PF00501 AMP-binding enzyme LNQ40_015050 PF13193 AMP-binding enzyme C-terminal domain LNQ40_015050 PF00975 Thioesterase domain LNQ40_015050 PF00668 Condensation domain LNQ40_015050 PF00550 Phosphopantetheine attachment site LNQ40_015060 PF00550 Phosphopantetheine attachment site LNQ40_015060 PF00857 Isochorismatase family LNQ40_015065 PF00501 AMP-binding enzyme LNQ40_015065 PF13193 AMP-binding enzyme C-terminal domain LNQ40_015070 PF00425 chorismate binding enzyme LNQ40_015075 PF01497 Periplasmic binding protein LNQ40_015080 PF05977 Transmembrane secretion effector LNQ40_015085 PF01032 FecCD transport family LNQ40_015090 PF01032 FecCD transport family LNQ40_015095 PF00005 ABC transporter LNQ40_015105 PF00501 AMP-binding enzyme LNQ40_015105 PF13193 AMP-binding enzyme C-terminal domain LNQ40_015105 PF00550 Phosphopantetheine attachment site LNQ40_015105 PF00975 Thioesterase domain LNQ40_015105 PF00668 Condensation domain LNQ40_015110 PF03621 MbtH-like protein LNQ40_015115 PF11806 Domain of unknown function (DUF3327) LNQ40_015115 PF00756 Putative esterase LNQ40_015120 PF07715 TonB-dependent Receptor Plug Domain LNQ40_015120 PF00593 TonB dependent receptor LNQ40_015125 PF08501 Shikimate dehydrogenase substrate binding domain LNQ40_015150 PF00263 Bacterial type II and III secretion system protein LNQ40_015150 PF13629 Pilus formation protein N terminal region LNQ40_015150 PF04972 BON domain LNQ40_015165 PF00437 Type II/IV secretion system protein LNQ40_015200 PF02472 Biopolymer transport protein ExbD/TolR LNQ40_015205 PF01618 MotA/TolQ/ExbB proton channel family LNQ40_015210 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ40_015215 PF09335 SNARE associated Golgi protein LNQ40_015220 PF06719 AraC-type transcriptional regulator N-terminus LNQ40_015220 PF12833 Helix-turn-helix domain LNQ40_015225 PF00465 Iron-containing alcohol dehydrogenase LNQ40_015230 PF00248 Aldo/keto reductase family LNQ40_015235 PF11842 Domain of unknown function (DUF3362) LNQ40_015235 PF04055 Radical SAM superfamily LNQ40_015235 PF08497 Radical SAM N-terminal LNQ40_015240 PF07731 Multicopper oxidase LNQ40_015240 PF07732 Multicopper oxidase LNQ40_015245 PF01553 Acyltransferase LNQ40_015250 PF03989 DNA gyrase C-terminal domain, beta-propeller LNQ40_015250 PF00521 DNA gyrase/topoisomerase IV, subunit A LNQ40_015255 PF02525 Flavodoxin-like fold LNQ40_015260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_015260 PF03466 LysR substrate binding domain LNQ40_015265 PF00204 DNA gyrase B LNQ40_015265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_015265 PF01751 Toprim domain LNQ40_015265 PF00986 DNA gyrase B subunit, carboxyl terminus LNQ40_015270 PF05728 Uncharacterised protein family (UPF0227) LNQ40_015275 PF00149 Calcineurin-like phosphoesterase LNQ40_015280 PF06853 Protein of unknown function (DUF1249) LNQ40_015285 PF00293 NUDIX domain LNQ40_015290 PF02321 Outer membrane efflux protein LNQ40_015295 PF06693 Protein of unknown function (DUF1190) LNQ40_015300 PF03738 Glutathionylspermidine synthase preATP-grasp LNQ40_015305 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LNQ40_015310 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LNQ40_015315 PF04380 Membrane fusogenic activity LNQ40_015320 PF00294 pfkB family carbohydrate kinase LNQ40_015320 PF01467 Cytidylyltransferase-like LNQ40_015325 PF01548 Transposase LNQ40_015325 PF02371 Transposase IS116/IS110/IS902 family LNQ40_015330 PF08335 GlnD PII-uridylyltransferase LNQ40_015330 PF03710 Glutamate-ammonia ligase adenylyltransferase LNQ40_015335 PF01928 CYTH domain LNQ40_015340 PF08239 Bacterial SH3 domain LNQ40_015345 PF01966 HD domain LNQ40_015345 PF12627 Probable RNA and SrmB- binding site of polymerase A LNQ40_015345 PF01743 Poly A polymerase head domain LNQ40_015350 PF02673 Bacitracin resistance protein BacA LNQ40_015355 PF02152 Dihydroneopterin aldolase LNQ40_015360 PF02660 Glycerol-3-phosphate acyltransferase LNQ40_015365 PF00814 Glycoprotease family LNQ40_015370 PF01165 Ribosomal protein S21 LNQ40_015375 PF10410 DnaB-helicase binding domain of primase LNQ40_015375 PF01807 CHC2 zinc finger LNQ40_015375 PF08278 DNA primase DnaG DnaB-binding LNQ40_015375 PF08275 DNA primase catalytic core, N-terminal domain LNQ40_015380 PF00140 Sigma-70 factor, region 1.2 LNQ40_015380 PF04546 Sigma-70, non-essential region LNQ40_015380 PF03979 Sigma-70 factor, region 1.1 LNQ40_015380 PF04542 Sigma-70 region 2 LNQ40_015380 PF04539 Sigma-70 region 3 LNQ40_015380 PF04545 Sigma-70, region 4 LNQ40_015405 PF00106 short chain dehydrogenase LNQ40_015430 PF08241 Methyltransferase domain LNQ40_015435 PF00535 Glycosyl transferase family 2 LNQ40_015485 PF08479 POTRA domain, ShlB-type LNQ40_015485 PF17287 POTRA domain LNQ40_015485 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ40_015490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNQ40_015490 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_015495 PF05175 Methyltransferase small domain LNQ40_015505 PF01863 Protein of unknown function DUF45 LNQ40_015510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ40_015515 PF03741 Integral membrane protein TerC family LNQ40_015520 PF00375 Sodium:dicarboxylate symporter family LNQ40_015525 PF10688 Bacterial inner membrane protein LNQ40_015530 PF08666 SAF domain LNQ40_015530 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LNQ40_015535 PF01232 Mannitol dehydrogenase Rossmann domain LNQ40_015535 PF08125 Mannitol dehydrogenase C-terminal domain LNQ40_015540 PF02614 Glucuronate isomerase LNQ40_015545 PF07690 Major Facilitator Superfamily LNQ40_015550 PF07729 FCD domain LNQ40_015550 PF00392 Bacterial regulatory proteins, gntR family LNQ40_015560 PF09335 SNARE associated Golgi protein LNQ40_015565 PF13721 SecD export protein N-terminal TM region LNQ40_015575 PF05957 Bacterial protein of unknown function (DUF883) LNQ40_015580 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LNQ40_015585 PF13997 YqjK-like protein LNQ40_015590 PF07681 DoxX LNQ40_015595 PF03466 LysR substrate binding domain LNQ40_015595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_015600 PF02678 Pirin LNQ40_015600 PF17954 Quercetinase C-terminal cupin domain LNQ40_015615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ40_015620 PF04348 LppC putative lipoprotein LNQ40_015625 PF02021 Uncharacterised protein family UPF0102 LNQ40_015630 PF13580 SIS domain LNQ40_015635 PF04972 BON domain LNQ40_015640 PF00912 Transglycosylase LNQ40_015650 PF01627 Hpt domain LNQ40_015650 PF00072 Response regulator receiver domain LNQ40_015650 PF00989 PAS fold LNQ40_015650 PF18415 Histidine kinase receptor ArcB trans-membrane domain LNQ40_015650 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_015650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_015655 PF16199 Radical_SAM C-terminal domain LNQ40_015655 PF04055 Radical SAM superfamily LNQ40_015660 PF01493 GXGXG motif LNQ40_015660 PF01645 Conserved region in glutamate synthase LNQ40_015660 PF04898 Glutamate synthase central domain LNQ40_015660 PF00310 Glutamine amidotransferases class-II LNQ40_015665 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_015665 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNQ40_015675 PF04386 Stringent starvation protein B LNQ40_015680 PF02798 Glutathione S-transferase, N-terminal domain LNQ40_015680 PF00043 Glutathione S-transferase, C-terminal domain LNQ40_015685 PF00380 Ribosomal protein S9/S16 LNQ40_015690 PF00572 Ribosomal protein L13 LNQ40_015695 PF03969 AFG1-like ATPase LNQ40_015700 PF06295 Protein of unknown function (DUF1043) LNQ40_015705 PF13180 PDZ domain LNQ40_015705 PF00595 PDZ domain LNQ40_015710 PF13180 PDZ domain LNQ40_015715 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNQ40_015720 PF01722 BolA-like protein LNQ40_015725 PF13466 STAS domain LNQ40_015730 PF05494 MlaC protein LNQ40_015735 PF02470 MlaD protein LNQ40_015740 PF02405 Permease MlaE LNQ40_015745 PF00005 ABC transporter LNQ40_015750 PF01699 Sodium/calcium exchanger protein LNQ40_015755 PF00571 CBS domain LNQ40_015755 PF01380 SIS domain LNQ40_015765 PF06835 Lipopolysaccharide-assembly, LptC-related LNQ40_015770 PF03968 OstA-like protein LNQ40_015775 PF00005 ABC transporter LNQ40_015775 PF12399 Branched-chain amino acid ATP-binding cassette transporter LNQ40_015780 PF04552 Sigma-54, DNA binding domain LNQ40_015780 PF04963 Sigma-54 factor, core binding domain LNQ40_015780 PF00309 Sigma-54 factor, Activator interacting domain (AID) LNQ40_015785 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LNQ40_015790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ40_015795 PF03668 P-loop ATPase protein family LNQ40_015800 PF00381 PTS HPr component phosphorylation site LNQ40_015805 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNQ40_015805 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNQ40_015810 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LNQ40_015810 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LNQ40_015815 PF01042 Endoribonuclease L-PSP LNQ40_015820 PF00128 Alpha amylase, catalytic domain LNQ40_015820 PF11941 Domain of unknown function (DUF3459) LNQ40_015825 PF00367 phosphotransferase system, EIIB LNQ40_015825 PF02378 Phosphotransferase system, EIIC LNQ40_015830 PF00356 Bacterial regulatory proteins, lacI family LNQ40_015835 PF00689 Cation transporting ATPase, C-terminus LNQ40_015835 PF00690 Cation transporter/ATPase, N-terminus LNQ40_015845 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ40_015845 PF14760 Rnk N-terminus LNQ40_015850 PF07361 Cytochrome b562 LNQ40_015855 PF01523 Putative modulator of DNA gyrase LNQ40_015860 PF04751 Protein of unknown function (DUF615) LNQ40_015865 PF01337 Barstar (barnase inhibitor) LNQ40_015870 PF00545 ribonuclease LNQ40_015875 PF00171 Aldehyde dehydrogenase family LNQ40_015880 PF04632 Fusaric acid resistance protein family LNQ40_015885 PF13533 Biotin-lipoyl like LNQ40_015890 PF07869 Protein of unknown function (DUF1656) LNQ40_015895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_015895 PF03466 LysR substrate binding domain LNQ40_015900 PF01523 Putative modulator of DNA gyrase LNQ40_015905 PF00795 Carbon-nitrogen hydrolase LNQ40_015910 PF13116 Protein of unknown function LNQ40_015910 PF13502 AsmA-like C-terminal region LNQ40_015915 PF10150 Ribonuclease E/G family LNQ40_015915 PF00575 S1 RNA binding domain LNQ40_015920 PF02545 Maf-like protein LNQ40_015925 PF04093 rod shape-determining protein MreD LNQ40_015930 PF04085 rod shape-determining protein MreC LNQ40_015940 PF00563 EAL domain LNQ40_015940 PF17157 Gammaproteobacterial periplasmic sensor domain LNQ40_015940 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_015945 PF08240 Alcohol dehydrogenase GroES-like domain LNQ40_015945 PF00107 Zinc-binding dehydrogenase LNQ40_015950 PF00174 Oxidoreductase molybdopterin binding domain LNQ40_015955 PF01794 Ferric reductase like transmembrane component LNQ40_015960 PF01220 Dehydroquinase class II LNQ40_015965 PF00364 Biotin-requiring enzyme LNQ40_015970 PF02785 Biotin carboxylase C-terminal domain LNQ40_015970 PF00289 Biotin carboxylase, N-terminal domain LNQ40_015970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNQ40_015975 PF06196 Protein of unknown function (DUF997) LNQ40_015980 PF00474 Sodium:solute symporter family LNQ40_015990 PF01207 Dihydrouridine synthase (Dus) LNQ40_015995 PF02954 Bacterial regulatory protein, Fis family LNQ40_016005 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ40_016010 PF00484 Carbonic anhydrase LNQ40_016015 PF04172 LrgB-like family LNQ40_016020 PF03788 LrgA family LNQ40_016025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_016025 PF03466 LysR substrate binding domain LNQ40_016030 PF00999 Sodium/hydrogen exchanger family LNQ40_016035 PF00860 Permease family LNQ40_016045 PF00436 Single-strand binding protein family LNQ40_016050 PF00005 ABC transporter LNQ40_016050 PF17755 UvrA DNA-binding domain LNQ40_016050 PF17760 UvrA interaction domain LNQ40_016055 PF04237 YjbR LNQ40_016060 PF00155 Aminotransferase class I and II LNQ40_016065 PF00842 Alanine racemase, C-terminal domain LNQ40_016065 PF01168 Alanine racemase, N-terminal domain LNQ40_016070 PF00772 DnaB-like helicase N terminal domain LNQ40_016070 PF03796 DnaB-like helicase C terminal domain LNQ40_016075 PF08240 Alcohol dehydrogenase GroES-like domain LNQ40_016075 PF00107 Zinc-binding dehydrogenase LNQ40_016080 PF09583 Phage shock protein G (Phageshock_PspG) LNQ40_016085 PF01207 Dihydrouridine synthase (Dus) LNQ40_016090 PF01475 Ferric uptake regulator family LNQ40_016095 PF01726 LexA DNA binding domain LNQ40_016095 PF00717 Peptidase S24-like LNQ40_016100 PF01219 Prokaryotic diacylglycerol kinase LNQ40_016105 PF01553 Acyltransferase LNQ40_016110 PF01040 UbiA prenyltransferase family LNQ40_016115 PF04345 Chorismate lyase LNQ40_016120 PF07148 Maltose operon periplasmic protein precursor (MalM) LNQ40_016125 PF02264 LamB porin LNQ40_016130 PF00005 ABC transporter LNQ40_016130 PF17912 MalK OB fold domain LNQ40_016140 PF01547 Bacterial extracellular solute-binding protein LNQ40_016145 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_016145 PF14785 Maltose transport system permease protein MalF P2 domain LNQ40_016150 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_016155 PF06146 Phosphate-starvation-inducible E LNQ40_016160 PF00342 Phosphoglucose isomerase LNQ40_016165 PF00696 Amino acid kinase family LNQ40_016165 PF01842 ACT domain LNQ40_016170 PF08479 POTRA domain, ShlB-type LNQ40_016170 PF17287 POTRA domain LNQ40_016170 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ40_016175 PF13332 Hemagglutinin repeat LNQ40_016175 PF05860 haemagglutination activity domain LNQ40_016180 PF04488 Glycosyltransferase sugar-binding region containing DXD motif LNQ40_016190 PF17758 Proteasomal ATPase OB N-terminal domain LNQ40_016190 PF16450 Proteasomal ATPase OB C-terminal domain LNQ40_016190 PF00004 ATPase family associated with various cellular activities (AAA) LNQ40_016270 PF03466 LysR substrate binding domain LNQ40_016270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_016285 PF02965 Vitamin B12 dependent methionine synthase, activation domain LNQ40_016285 PF02310 B12 binding domain LNQ40_016285 PF00809 Pterin binding enzyme LNQ40_016285 PF02574 Homocysteine S-methyltransferase LNQ40_016285 PF02607 B12 binding domain LNQ40_016290 PF09339 IclR helix-turn-helix domain LNQ40_016290 PF01614 Bacterial transcriptional regulator LNQ40_016295 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LNQ40_016300 PF00463 Isocitrate lyase family LNQ40_016305 PF01274 Malate synthase LNQ40_016310 PF04204 Homoserine O-succinyltransferase LNQ40_016345 PF01808 AICARFT/IMPCHase bienzyme LNQ40_016345 PF02142 MGS-like domain LNQ40_016350 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LNQ40_016350 PF02843 Phosphoribosylglycinamide synthetase, C domain LNQ40_016350 PF02844 Phosphoribosylglycinamide synthetase, N domain LNQ40_016355 PF07356 Protein of unknown function (DUF1481) LNQ40_016360 PF00216 Bacterial DNA-binding protein LNQ40_016365 PF04222 Protein of unknown function (DUF416) LNQ40_016370 PF04493 Endonuclease V LNQ40_016375 PF01208 Uroporphyrinogen decarboxylase (URO-D) LNQ40_016380 PF09297 NADH pyrophosphatase zinc ribbon domain LNQ40_016380 PF00293 NUDIX domain LNQ40_016385 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LNQ40_016390 PF13667 ThiC-associated domain LNQ40_016390 PF01964 Radical SAM ThiC family LNQ40_016395 PF02581 Thiamine monophosphate synthase LNQ40_016400 PF00899 ThiF family LNQ40_016405 PF02597 ThiS family LNQ40_016410 PF05690 Thiazole biosynthesis protein ThiG LNQ40_016415 PF04055 Radical SAM superfamily LNQ40_016415 PF06968 Biotin and Thiamin Synthesis associated domain LNQ40_016420 PF04998 RNA polymerase Rpb1, domain 5 LNQ40_016420 PF05000 RNA polymerase Rpb1, domain 4 LNQ40_016420 PF04983 RNA polymerase Rpb1, domain 3 LNQ40_016420 PF00623 RNA polymerase Rpb1, domain 2 LNQ40_016420 PF04997 RNA polymerase Rpb1, domain 1 LNQ40_016425 PF04561 RNA polymerase Rpb2, domain 2 LNQ40_016425 PF04565 RNA polymerase Rpb2, domain 3 LNQ40_016425 PF10385 RNA polymerase beta subunit external 1 domain LNQ40_016425 PF00562 RNA polymerase Rpb2, domain 6 LNQ40_016425 PF04560 RNA polymerase Rpb2, domain 7 LNQ40_016425 PF04563 RNA polymerase beta subunit LNQ40_016430 PF16320 Ribosomal protein L7/L12 dimerisation domain LNQ40_016430 PF00542 Ribosomal protein L7/L12 C-terminal domain LNQ40_016435 PF00466 Ribosomal protein L10 LNQ40_016440 PF00687 Ribosomal protein L1p/L10e family LNQ40_016445 PF00298 Ribosomal protein L11, RNA binding domain LNQ40_016445 PF03946 Ribosomal protein L11, N-terminal domain LNQ40_016450 PF00467 KOW motif LNQ40_016450 PF02357 Transcription termination factor nusG LNQ40_016455 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LNQ40_016460 PF00009 Elongation factor Tu GTP binding domain LNQ40_016460 PF03143 Elongation factor Tu C-terminal domain LNQ40_016460 PF03144 Elongation factor Tu domain 2 LNQ40_016485 PF00485 Phosphoribulokinase / Uridine kinase family LNQ40_016490 PF02237 Biotin protein ligase C terminal domain LNQ40_016490 PF03099 Biotin/lipoate A/B protein ligase family LNQ40_016490 PF08279 HTH domain LNQ40_016495 PF01565 FAD binding domain LNQ40_016495 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LNQ40_016520 PF12724 Flavodoxin domain LNQ40_016525 PF02386 Cation transport protein LNQ40_016530 PF09186 Domain of unknown function (DUF1949) LNQ40_016530 PF01205 Uncharacterized protein family UPF0029 LNQ40_016535 PF00557 Metallopeptidase family M24 LNQ40_016540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNQ40_016540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNQ40_016540 PF00378 Enoyl-CoA hydratase/isomerase LNQ40_016545 PF02803 Thiolase, C-terminal domain LNQ40_016545 PF00108 Thiolase, N-terminal domain LNQ40_016550 PF00970 Oxidoreductase FAD-binding domain LNQ40_016550 PF00175 Oxidoreductase NAD-binding domain LNQ40_016555 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LNQ40_016565 PF02357 Transcription termination factor nusG LNQ40_016570 PF00490 Delta-aminolevulinic acid dehydratase LNQ40_016575 PF01026 TatD related DNase LNQ40_016580 PF00902 Sec-independent protein translocase protein (TatC) LNQ40_016590 PF02416 mttA/Hcf106 family LNQ40_016595 PF03109 ABC1 family LNQ40_016600 PF02036 SCP-2 sterol transfer family LNQ40_016605 PF01209 ubiE/COQ5 methyltransferase family LNQ40_016610 PF02646 RmuC family LNQ40_016615 PF09335 SNARE associated Golgi protein LNQ40_016620 PF13722 5TM C-terminal transporter carbon starvation CstA LNQ40_016620 PF02554 Carbon starvation protein CstA LNQ40_016630 PF01048 Phosphorylase superfamily LNQ40_016635 PF01738 Dienelactone hydrolase family LNQ40_016640 PF08267 Cobalamin-independent synthase, N-terminal domain LNQ40_016640 PF01717 Cobalamin-independent synthase, Catalytic domain LNQ40_016645 PF03466 LysR substrate binding domain LNQ40_016645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_016650 PF00892 EamA-like transporter family LNQ40_016660 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ40_016665 PF00005 ABC transporter LNQ40_016665 PF17912 MalK OB fold domain LNQ40_016670 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_016675 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_016680 PF13416 Bacterial extracellular solute-binding protein LNQ40_016715 PF00005 ABC transporter LNQ40_016720 PF00005 ABC transporter LNQ40_016720 PF12399 Branched-chain amino acid ATP-binding cassette transporter LNQ40_016725 PF02653 Branched-chain amino acid transport system / permease component LNQ40_016725 PF11862 Domain of unknown function (DUF3382) LNQ40_016730 PF02653 Branched-chain amino acid transport system / permease component LNQ40_016735 PF13458 Periplasmic binding protein LNQ40_016740 PF12568 Acetyltransferase (GNAT) domain, PanZ LNQ40_016745 PF02595 Glycerate kinase family LNQ40_016750 PF02447 GntP family permease LNQ40_016755 PF05651 Putative sugar diacid recognition LNQ40_016755 PF17853 GGDEF-like domain LNQ40_016755 PF13556 PucR C-terminal helix-turn-helix domain LNQ40_016760 PF00140 Sigma-70 factor, region 1.2 LNQ40_016760 PF04542 Sigma-70 region 2 LNQ40_016760 PF04545 Sigma-70, region 4 LNQ40_016765 PF18075 FtsX extracellular domain LNQ40_016765 PF02687 FtsX-like permease family LNQ40_016770 PF00005 ABC transporter LNQ40_016775 PF02881 SRP54-type protein, helical bundle domain LNQ40_016775 PF00448 SRP54-type protein, GTPase domain LNQ40_016775 PF02881 SRP54-type protein, helical bundle domain LNQ40_016775 PF00448 SRP54-type protein, GTPase domain LNQ40_016785 PF06611 Protein of unknown function (DUF1145) LNQ40_016800 PF07947 YhhN family LNQ40_016805 PF00403 Heavy-metal-associated domain LNQ40_016810 PF01206 Sulfurtransferase TusA LNQ40_016815 PF02592 Putative vitamin uptake transporter LNQ40_016820 PF08786 DcrB LNQ40_016825 PF13183 4Fe-4S dicluster domain LNQ40_016825 PF02754 Cysteine-rich domain LNQ40_016830 PF00890 FAD binding domain LNQ40_016835 PF01266 FAD dependent oxidoreductase LNQ40_016835 PF04324 BFD-like [2Fe-2S] binding domain LNQ40_016845 PF07690 Major Facilitator Superfamily LNQ40_016850 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ40_016860 PF12146 Serine aminopeptidase, S33 LNQ40_016865 PF01810 LysE type translocator LNQ40_016870 PF00570 HRDC domain LNQ40_016870 PF16124 RecQ zinc-binding LNQ40_016870 PF09382 RQC domain LNQ40_016870 PF00270 DEAD/DEAH box helicase LNQ40_016870 PF00271 Helicase conserved C-terminal domain LNQ40_016875 PF02253 Phospholipase A1 LNQ40_016880 PF03061 Thioesterase superfamily LNQ40_016885 PF00892 EamA-like transporter family LNQ40_016890 PF01544 CorA-like Mg2+ transporter protein LNQ40_016900 PF09370 Phosphoenolpyruvate hydrolase-like LNQ40_016915 PF00580 UvrD/REP helicase N-terminal domain LNQ40_016915 PF13361 UvrD-like helicase C-terminal domain LNQ40_016920 PF13419 Haloacid dehalogenase-like hydrolase LNQ40_016925 PF02899 Phage integrase, N-terminal SAM-like domain LNQ40_016925 PF00589 Phage integrase family LNQ40_016930 PF04340 Protein of unknown function, DUF484 LNQ40_016935 PF01678 Diaminopimelate epimerase LNQ40_016940 PF13627 Prokaryotic lipoprotein-attachment site LNQ40_016945 PF01491 Frataxin-like domain LNQ40_016950 PF01295 Adenylate cyclase, class-I LNQ40_016950 PF12633 Adenylate cyclase NT domain LNQ40_016955 PF03900 Porphobilinogen deaminase, C-terminal domain LNQ40_016955 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LNQ40_016960 PF02602 Uroporphyrinogen-III synthase HemD LNQ40_016965 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LNQ40_016970 PF07719 Tetratricopeptide repeat LNQ40_016970 PF07219 HemY protein N-terminus LNQ40_016995 PF00324 Amino acid permease LNQ40_017000 PF03808 Glycosyl transferase WecB/TagA/CpsF family LNQ40_017005 PF06899 WzyE protein, O-antigen assembly polymerase LNQ40_017010 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LNQ40_017015 PF01943 Polysaccharide biosynthesis protein LNQ40_017020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ40_017030 PF00483 Nucleotidyl transferase LNQ40_017035 PF16363 GDP-mannose 4,6 dehydratase LNQ40_017040 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNQ40_017040 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNQ40_017040 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNQ40_017045 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ40_017050 PF02706 Chain length determinant protein LNQ40_017055 PF00953 Glycosyl transferase family 4 LNQ40_017060 PF07497 Rho termination factor, RNA-binding domain LNQ40_017060 PF07498 Rho termination factor, N-terminal domain LNQ40_017060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ40_017065 PF00085 Thioredoxin LNQ40_017070 PF00271 Helicase conserved C-terminal domain LNQ40_017070 PF00270 DEAD/DEAH box helicase LNQ40_017075 PF02541 Ppx/GppA phosphatase family LNQ40_017080 PF00580 UvrD/REP helicase N-terminal domain LNQ40_017080 PF13361 UvrD-like helicase C-terminal domain LNQ40_017090 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LNQ40_017090 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LNQ40_017095 PF03466 LysR substrate binding domain LNQ40_017095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_017100 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ40_017100 PF18416 N-acetylglucosamine binding protein domain 2 LNQ40_017105 PF00291 Pyridoxal-phosphate dependent enzyme LNQ40_017105 PF00585 C-terminal regulatory domain of Threonine dehydratase LNQ40_017110 PF00920 Dehydratase family LNQ40_017115 PF01063 Amino-transferase class IV LNQ40_017125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ40_017125 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ40_017125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ40_017130 PF08046 IlvGEDA operon leader peptide LNQ40_017135 PF13335 Magnesium chelatase, subunit ChlI C-terminal LNQ40_017135 PF01078 Magnesium chelatase, subunit ChlI LNQ40_017140 PF04219 Protein of unknown function, DUF LNQ40_017145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_017145 PF03466 LysR substrate binding domain LNQ40_017190 PF01177 Asp/Glu/Hydantoin racemase LNQ40_017195 PF07715 TonB-dependent Receptor Plug Domain LNQ40_017195 PF00593 TonB dependent receptor LNQ40_017200 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ40_017205 PF07226 Protein of unknown function (DUF1422) LNQ40_017210 PF00440 Bacterial regulatory proteins, tetR family LNQ40_017215 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_017215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ40_017220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_017220 PF03466 LysR substrate binding domain LNQ40_017225 PF00462 Glutaredoxin LNQ40_017225 PF08534 Redoxin LNQ40_017230 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ40_017230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ40_017250 PF00529 HlyD membrane-fusion protein of T1SS LNQ40_017255 PF00664 ABC transporter transmembrane region LNQ40_017255 PF00005 ABC transporter LNQ40_017265 PF07715 TonB-dependent Receptor Plug Domain LNQ40_017265 PF00593 TonB dependent receptor LNQ40_017270 PF14698 Argininosuccinate lyase C-terminal LNQ40_017270 PF00206 Lyase LNQ40_017275 PF00764 Arginosuccinate synthase LNQ40_017280 PF00696 Amino acid kinase family LNQ40_017285 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ40_017285 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ40_017290 PF07687 Peptidase dimerisation domain LNQ40_017290 PF01546 Peptidase family M20/M25/M40 LNQ40_017295 PF00311 Phosphoenolpyruvate carboxylase LNQ40_017305 PF02219 Methylenetetrahydrofolate reductase LNQ40_017325 PF00696 Amino acid kinase family LNQ40_017325 PF00742 Homoserine dehydrogenase LNQ40_017325 PF03447 Homoserine dehydrogenase, NAD binding domain LNQ40_017330 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ40_017335 PF01340 Met Apo-repressor, MetJ LNQ40_017340 PF01197 Ribosomal protein L31 LNQ40_017345 PF18074 Primosomal protein N C-terminal domain LNQ40_017345 PF17764 3′ DNA-binding domain (3′BD) LNQ40_017345 PF00271 Helicase conserved C-terminal domain LNQ40_017345 PF00270 DEAD/DEAH box helicase LNQ40_017345 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LNQ40_017350 PF00356 Bacterial regulatory proteins, lacI family LNQ40_017355 PF05036 Sporulation related domain LNQ40_017360 PF00227 Proteasome subunit LNQ40_017365 PF00004 ATPase family associated with various cellular activities (AAA) LNQ40_017365 PF07724 AAA domain (Cdc48 subfamily) LNQ40_017365 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ40_017370 PF01040 UbiA prenyltransferase family LNQ40_017375 PF03737 Aldolase/RraA LNQ40_017380 PF06005 Cell division protein ZapB LNQ40_017385 PF00230 Major intrinsic protein LNQ40_017390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNQ40_017390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNQ40_017395 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LNQ40_017400 PF07690 Major Facilitator Superfamily LNQ40_017405 PF00175 Oxidoreductase NAD-binding domain LNQ40_017405 PF00970 Oxidoreductase FAD-binding domain LNQ40_017410 PF05656 Protein of unknown function (DUF805) LNQ40_017415 PF07305 Protein of unknown function (DUF1454) LNQ40_017420 PF00121 Triosephosphate isomerase LNQ40_017430 PF00365 Phosphofructokinase LNQ40_017435 PF01545 Cation efflux family LNQ40_017435 PF16916 Dimerisation domain of Zinc Transporter LNQ40_017440 PF07813 LTXXQ motif family protein LNQ40_017445 PF00486 Transcriptional regulatory protein, C terminal LNQ40_017445 PF00072 Response regulator receiver domain LNQ40_017450 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_017450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_017450 PF00672 HAMP domain LNQ40_017450 PF16527 Two-component sensor protein CpxA, periplasmic domain LNQ40_017455 PF00588 SpoU rRNA Methylase family LNQ40_017460 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ40_017460 PF06426 Serine acetyltransferase, N-terminal LNQ40_017465 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LNQ40_017465 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LNQ40_017470 PF02556 Preprotein translocase subunit SecB LNQ40_017475 PF00462 Glutaredoxin LNQ40_017480 PF00581 Rhodanese-like domain LNQ40_017485 PF01676 Metalloenzyme superfamily LNQ40_017485 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LNQ40_017490 PF01551 Peptidase family M23 LNQ40_017495 PF04748 Divergent polysaccharide deacetylase LNQ40_017500 PF08240 Alcohol dehydrogenase GroES-like domain LNQ40_017500 PF00107 Zinc-binding dehydrogenase LNQ40_017505 PF00155 Aminotransferase class I and II LNQ40_017510 PF01370 NAD dependent epimerase/dehydratase family LNQ40_017515 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ40_017520 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ40_017525 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LNQ40_017530 PF00535 Glycosyl transferase family 2 LNQ40_017535 PF01467 Cytidylyltransferase-like LNQ40_017540 PF06827 Zinc finger found in FPG and IleRS LNQ40_017540 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LNQ40_017540 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LNQ40_017545 PF00471 Ribosomal protein L33 LNQ40_017550 PF00830 Ribosomal L28 family LNQ40_017555 PF04002 RadC-like JAB domain LNQ40_017560 PF02441 Flavoprotein LNQ40_017560 PF04127 DNA / pantothenate metabolism flavoprotein LNQ40_017565 PF00692 dUTPase LNQ40_017570 PF00440 Bacterial regulatory proteins, tetR family LNQ40_017575 PF00156 Phosphoribosyl transferase domain LNQ40_017580 PF01138 3' exoribonuclease family, domain 1 LNQ40_017580 PF03725 3' exoribonuclease family, domain 2 LNQ40_017585 PF08340 Domain of unknown function (DUF1732) LNQ40_017585 PF03755 YicC-like family, N-terminal region LNQ40_017595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ40_017595 PF03466 LysR substrate binding domain LNQ40_017600 PF00990 Diguanylate cyclase, GGDEF domain LNQ40_017600 PF13426 PAS domain LNQ40_017600 PF00563 EAL domain LNQ40_017605 PF00378 Enoyl-CoA hydratase/isomerase LNQ40_017610 PF07670 Nucleoside recognition LNQ40_017610 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ40_017610 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ40_017625 PF03458 UPF0126 domain LNQ40_017630 PF03120 NAD-dependent DNA ligase OB-fold domain LNQ40_017630 PF01653 NAD-dependent DNA ligase adenylation domain LNQ40_017635 PF00625 Guanylate kinase LNQ40_017640 PF01192 RNA polymerase Rpb6 LNQ40_017645 PF02824 TGS domain LNQ40_017645 PF04607 Region found in RelA / SpoT proteins LNQ40_017645 PF13291 ACT domain LNQ40_017650 PF12105 SpoU, rRNA methylase, C-terminal LNQ40_017650 PF00588 SpoU rRNA Methylase family LNQ40_017655 PF00270 DEAD/DEAH box helicase LNQ40_017655 PF00271 Helicase conserved C-terminal domain LNQ40_017655 PF17191 RecG wedge domain LNQ40_017660 PF03616 Sodium/glutamate symporter LNQ40_017665 PF00860 Permease family LNQ40_017670 PF05170 AsmA family LNQ40_017675 PF09500 Putative thioesterase (yiiD_Cterm) LNQ40_017675 PF00583 Acetyltransferase (GNAT) family LNQ40_017680 PF02580 D-Tyr-tRNA(Tyr) deacylase LNQ40_017685 PF03631 Virulence factor BrkB LNQ40_017690 PF13419 Haloacid dehalogenase-like hydrolase LNQ40_017695 PF03144 Elongation factor Tu domain 2 LNQ40_017695 PF00009 Elongation factor Tu GTP binding domain LNQ40_017695 PF00679 Elongation factor G C-terminus LNQ40_017700 PF03951 Glutamine synthetase, beta-Grasp domain LNQ40_017700 PF00120 Glutamine synthetase, catalytic domain LNQ40_017705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ40_017705 PF00512 His Kinase A (phospho-acceptor) domain LNQ40_017705 PF00989 PAS fold LNQ40_017710 PF02954 Bacterial regulatory protein, Fis family LNQ40_017710 PF00072 Response regulator receiver domain LNQ40_017710 PF00158 Sigma-54 interaction domain LNQ40_017715 PF06969 HemN C-terminal domain LNQ40_017715 PF04055 Radical SAM superfamily LNQ40_017720 PF04220 Der GTPase activator (YihI) LNQ40_017725 PF01926 50S ribosome-binding GTPase LNQ40_017730 PF01612 3'-5' exonuclease LNQ40_017730 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNQ40_017730 PF01367 5'-3' exonuclease, C-terminal SAM fold LNQ40_017730 PF00476 DNA polymerase family A LNQ40_017735 PF01323 DSBA-like thioredoxin domain LNQ40_017740 PF01636 Phosphotransferase enzyme family LNQ40_017745 PF06288 Protein of unknown function (DUF1040) LNQ40_017750 PF12804 MobA-like NTP transferase domain LNQ40_017755 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LNQ40_017780 PF00392 Bacterial regulatory proteins, gntR family LNQ40_017780 PF07729 FCD domain LNQ40_017785 PF00356 Bacterial regulatory proteins, lacI family LNQ40_017790 PF00294 pfkB family carbohydrate kinase LNQ40_017795 PF13407 Periplasmic binding protein domain LNQ40_017800 PF02653 Branched-chain amino acid transport system / permease component LNQ40_017805 PF00005 ABC transporter LNQ40_017810 PF05025 RbsD / FucU transport protein family LNQ40_017815 PF02705 K+ potassium transporter LNQ40_017820 PF07728 AAA domain (dynein-related subfamily) LNQ40_017820 PF12592 Protein of unknown function (DUF3763) LNQ40_017820 PF17868 AAA lid domain LNQ40_017825 PF05762 VWA domain containing CoxE-like protein LNQ40_017835 PF03590 Aspartate-ammonia ligase LNQ40_017840 PF01037 Lrp/AsnC ligand binding domain LNQ40_017845 PF00258 Flavodoxin LNQ40_017850 PF01134 Glucose inhibited division protein A LNQ40_017850 PF13932 GidA associated domain LNQ40_017855 PF02527 rRNA small subunit methyltransferase G LNQ40_017860 PF03899 ATP synthase I chain LNQ40_017865 PF00119 ATP synthase A chain LNQ40_017870 PF00137 ATP synthase subunit C LNQ40_017875 PF00430 ATP synthase B/B' CF(0) LNQ40_017880 PF00213 ATP synthase delta (OSCP) subunit LNQ40_017885 PF00306 ATP synthase alpha/beta chain, C terminal domain LNQ40_017885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ40_017885 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ40_017890 PF00231 ATP synthase LNQ40_017895 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ40_017895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ40_017900 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LNQ40_017900 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LNQ40_017905 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ40_017905 PF12804 MobA-like NTP transferase domain LNQ40_017910 PF01380 SIS domain LNQ40_017915 PF12849 PBP superfamily domain LNQ40_017920 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_017925 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_017930 PF00005 ABC transporter LNQ40_017935 PF01895 PhoU domain LNQ40_017940 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ40_017945 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_017950 PF00528 Binding-protein-dependent transport system inner membrane component LNQ40_017955 PF00860 Permease family LNQ40_017960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ40_017960 PF02203 Tar ligand binding domain homologue LNQ40_017960 PF00672 HAMP domain LNQ40_017970 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ40_017970 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ40_017975 PF00577 Outer membrane usher protein LNQ40_017975 PF13953 PapC C-terminal domain LNQ40_017975 PF13954 PapC N-terminal domain LNQ40_017985 PF01926 50S ribosome-binding GTPase LNQ40_017985 PF12631 MnmE helical domain LNQ40_017985 PF10396 GTP-binding protein TrmE N-terminus LNQ40_017990 PF02096 60Kd inner membrane protein LNQ40_017990 PF14849 YidC periplasmic domain LNQ40_017995 PF01809 Putative membrane protein insertion efficiency factor LNQ40_018000 PF00825 Ribonuclease P LNQ40_018005 PF00468 Ribosomal protein L34