locus-tag	class	description
LNQ40_000010	COG0592	DNA-directed DNA polymerase activity
LNQ40_000020	COG0187	DNA topoisomerase II activity
LNQ40_000025	COG0561	phosphatase activity
LNQ40_000030	COG0823	Involved in the tonB-independent uptake of proteins
LNQ40_000035	COG5645	(Lipo)protein
LNQ40_000050	COG0569	domain protein
LNQ40_000050	COG2985	domain, Protein
LNQ40_000055	COG3977	Valine--pyruvate aminotransferase
LNQ40_000060	COG2885	chlorophyll binding
LNQ40_000080	COG2818	Glycosylase
LNQ40_000130	COG2213	PTS system mannitol-specific
LNQ40_000130	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ40_000140	COG3722	fumarate hydratase activity
LNQ40_000150	COG2258	MOSC domain
LNQ40_000155	COG0840	transmembrane signaling receptor activity
LNQ40_000160	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LNQ40_000175	COG0437	4 iron, 4 sulfur cluster binding
LNQ40_000180	COG2864	formate dehydrogenase
LNQ40_000190	COG1921	L-seryl-tRNASec selenium transferase activity
LNQ40_000195	COG3276	selenocysteine insertion sequence binding
LNQ40_000200	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
LNQ40_000210	COG3274	enterobacterial common antigen metabolic process
LNQ40_000220	COG0582	viral genome integration into host DNA
LNQ40_000260	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LNQ40_000265	COG2986	histidine ammonia-lyase
LNQ40_000285	COG2194	sulfuric ester hydrolase activity
LNQ40_000290	COG2197	response regulator
LNQ40_000295	COG3851	Histidine kinase
LNQ40_000300	COG2271	Major facilitator Superfamily
LNQ40_000310	COG0747	negative chemotaxis
LNQ40_000315	COG0601	transmembrane transport
LNQ40_000320	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNQ40_000325	COG0444	Belongs to the ABC transporter superfamily
LNQ40_000330	COG4608	Belongs to the ABC transporter superfamily
LNQ40_000335	COG2194	sulfuric ester hydrolase activity
LNQ40_000360	COG1215	transferase activity, transferring glycosyl groups
LNQ40_000365	COG1215	transferase activity, transferring glycosyl groups
LNQ40_000370	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LNQ40_000375	COG0457	Tetratricopeptide repeat
LNQ40_000375	COG3118	belongs to the thioredoxin family
LNQ40_000380	COG2199	diguanylate cyclase activity
LNQ40_000380	COG2200	EAL domain
LNQ40_000385	COG1301	dicarboxylic acid transport
LNQ40_000390	COG0612	Peptidase, M16
LNQ40_000395	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LNQ40_000400	COG1942	4-Oxalocrotonate Tautomerase
LNQ40_000405	COG2200	EAL domain
LNQ40_000410	COG2134	cdp-diacylglycerol pyrophosphatase
LNQ40_000415	COG1295	ribonuclease BN
LNQ40_000425	COG1301	dicarboxylic acid transport
LNQ40_000430	COG0626	cystathionine gamma-synthase activity
LNQ40_000435	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNQ40_000440	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LNQ40_000445	COG0339	signal peptide processing
LNQ40_000450	COG0742	ribosomal rna small subunit methyltransferase
LNQ40_000460	COG0589	response to stress
LNQ40_000470	COG0306	phosphate transporter
LNQ40_000475	COG2081	HI0933 family
LNQ40_000485	COG1247	-acetyltransferase
LNQ40_000495	COG1741	Belongs to the pirin family
LNQ40_000500	COG1609	Transcriptional regulator
LNQ40_000505	COG2610	gluconate transmembrane transporter activity
LNQ40_000510	COG3265	gluconokinase activity
LNQ40_000515	COG2095	MarC family integral membrane protein
LNQ40_000520	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LNQ40_000525	COG3275	phosphorelay sensor kinase activity
LNQ40_000530	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LNQ40_000535	COG1523	belongs to the glycosyl hydrolase 13 family
LNQ40_000540	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LNQ40_000545	COG0297	glycogen (starch) synthase activity
LNQ40_000550	COG0058	SHG alpha-glucan phosphorylase activity
LNQ40_000555	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LNQ40_000560	COG1349	DNA-binding transcription factor activity
LNQ40_000565	COG0705	Rhomboid family
LNQ40_000575	COG2909	trisaccharide binding
LNQ40_000580	COG0058	SHG alpha-glucan phosphorylase activity
LNQ40_000585	COG1640	4-alpha-glucanotransferase
LNQ40_000595	COG1040	competence protein
LNQ40_000600	COG0596	Alpha beta hydrolase
LNQ40_000620	COG1918	ferrous iron import across plasma membrane
LNQ40_000625	COG2183	response to ionizing radiation
LNQ40_000650	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LNQ40_000665	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LNQ40_000675	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LNQ40_000680	COG1011	Hydrolase
LNQ40_000690	COG0494	nUDIX hydrolase
LNQ40_000695	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LNQ40_000720	COG4796	Type ii and iii secretion system protein
LNQ40_000725	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LNQ40_000745	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LNQ40_000755	COG0180	Tryptophanyl-tRNA synthetase
LNQ40_000775	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LNQ40_000780	COG0402	S-adenosylhomocysteine deaminase activity
LNQ40_000785	COG0738	Major facilitator superfamily
LNQ40_000800	COG1609	Transcriptional regulator
LNQ40_000805	COG1486	melibiose metabolic process
LNQ40_000810	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LNQ40_000825	COG1289	transmembrane transporter activity
LNQ40_000830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LNQ40_000835	COG1765	OsmC-like protein
LNQ40_000860	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LNQ40_000865	COG3954	Phosphoribulokinase
LNQ40_000875	COG0429	hydrolase of the alpha beta-hydrolase fold
LNQ40_000885	COG0859	PFAM glycosyl transferase family 9
LNQ40_000890	COG1216	Glycosyl transferase, family 2
LNQ40_000895	COG0488	(ABC) transporter
LNQ40_000900	COG2249	NAD(P)H dehydrogenase (quinone) activity
LNQ40_000910	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LNQ40_000915	COG1047	Peptidyl-prolyl cis-trans
LNQ40_000925	COG0545	Peptidyl-prolyl cis-trans isomerase
LNQ40_000930	COG2964	Protein conserved in bacteria
LNQ40_000940	COG2923	Belongs to the DsrF TusC family
LNQ40_000945	COG2168	tRNA wobble position uridine thiolation
LNQ40_000950	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LNQ40_000955	COG0049	tRNA binding
LNQ40_000965	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LNQ40_000980	COG0051	transcription antitermination factor activity, RNA binding
LNQ40_000985	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LNQ40_000995	COG0089	rRNA binding
LNQ40_001000	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LNQ40_001005	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LNQ40_001010	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LNQ40_001020	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LNQ40_001025	COG0255	Belongs to the universal ribosomal protein uL29 family
LNQ40_001030	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LNQ40_001035	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LNQ40_001045	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LNQ40_001070	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LNQ40_001075	COG1841	ribosomal large subunit assembly
LNQ40_001080	COG0200	Binds to the 23S rRNA
LNQ40_001085	COG0201	protein transport
LNQ40_001090	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LNQ40_001095	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LNQ40_001105	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LNQ40_001115	COG0203	ribosomal protein L17
LNQ40_001120	COG0789	Transcriptional regulator
LNQ40_001125	COG3036	rescue of stalled ribosome
LNQ40_001130	COG1970	mechanosensitive ion channel activity
LNQ40_001140	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LNQ40_001140	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LNQ40_001145	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LNQ40_001150	COG0242	peptide deformylase activity
LNQ40_001155	COG0758	DNA mediated transformation
LNQ40_001160	COG2922	Belongs to the Smg family
LNQ40_001165	COG0551	DNA topoisomerase type I activity
LNQ40_001170	COG0009	L-threonylcarbamoyladenylate synthase
LNQ40_001180	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LNQ40_001210	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LNQ40_001215	COG3162	membrane
LNQ40_001220	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LNQ40_001225	COG1301	dicarboxylic acid transport
LNQ40_001230	COG2391	methyltransferase activity
LNQ40_001235	COG0425	Belongs to the sulfur carrier protein TusA family
LNQ40_001240	COG1086	Polysaccharide biosynthesis protein
LNQ40_001245	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LNQ40_001250	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LNQ40_001255	COG2089	acid synthase
LNQ40_001275	COG2755	lipolytic protein G-D-S-L family
LNQ40_001275	COG1083	cytidylyl-transferase
LNQ40_001280	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ40_001300	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNQ40_001300	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LNQ40_001305	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LNQ40_001325	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LNQ40_001345	COG1309	transcriptional regulator
LNQ40_001350	COG4232	protein-disulfide reductase activity
LNQ40_001360	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LNQ40_001390	COG1509	lysine 2,3-aminomutase activity
LNQ40_001400	COG3397	chitin binding
LNQ40_001420	COG3188	usher protein
LNQ40_001440	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LNQ40_001445	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LNQ40_001450	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LNQ40_001455	COG1053	succinate dehydrogenase
LNQ40_001460	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LNQ40_001465	COG1511	domain protein
LNQ40_001465	COG3264	Mechanosensitive ion channel
LNQ40_001470	COG0688	phosphatidylethanolamine metabolic process
LNQ40_001475	COG1162	GTPase activity
LNQ40_001480	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LNQ40_001500	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LNQ40_001505	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LNQ40_001505	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LNQ40_001510	COG0802	atpase or kinase
LNQ40_001515	COG0860	N-Acetylmuramoyl-L-alanine amidase
LNQ40_001525	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LNQ40_001535	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LNQ40_001540	COG0330	HflC and HflK could
LNQ40_001545	COG0330	HflC and HflK could
LNQ40_001550	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
LNQ40_001555	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LNQ40_001560	COG1959	2 iron, 2 sulfur cluster binding
LNQ40_001565	COG0557	exoribonuclease II activity
LNQ40_001570	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LNQ40_001590	COG3121	Chaperone
LNQ40_001595	COG3188	usher protein
LNQ40_001615	COG1073	alpha beta
LNQ40_001625	COG0360	Binds together with S18 to 16S ribosomal RNA
LNQ40_001630	COG2965	DNA replication, synthesis of RNA primer
LNQ40_001635	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LNQ40_001640	COG0359	binds to the 23S rRNA
LNQ40_001645	COG3061	Opacity-associated protein A
LNQ40_001650	COG0545	Peptidyl-prolyl cis-trans isomerase
LNQ40_001660	COG0737	Belongs to the 5'-nucleotidase family
LNQ40_001665	COG1218	3'(2'),5'-bisphosphate nucleotidase
LNQ40_001670	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
LNQ40_001680	COG1253	flavin adenine dinucleotide binding
LNQ40_001685	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LNQ40_001690	COG0729	surface antigen
LNQ40_001695	COG2911	Protein conserved in bacteria
LNQ40_001700	COG2105	PFAM AIG2 family protein
LNQ40_001705	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LNQ40_001715	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LNQ40_001730	COG3423	Transcriptional regulator
LNQ40_001745	COG0142	geranyltranstransferase activity
LNQ40_001760	COG0697	spore germination
LNQ40_001765	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LNQ40_001770	COG0642	Histidine kinase
LNQ40_001775	COG0745	RESPONSE REGULATOR receiver
LNQ40_001780	COG2027	D-alanyl-D-alanine carboxypeptidase
LNQ40_001790	COG1534	Rna-binding protein
LNQ40_001795	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LNQ40_001805	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LNQ40_001810	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LNQ40_001815	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LNQ40_001835	COG0195	Participates in both transcription termination and antitermination
LNQ40_001845	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LNQ40_001860	COG1185	polyribonucleotide nucleotidyltransferase activity
LNQ40_001870	COG0513	Belongs to the DEAD box helicase family
LNQ40_001875	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LNQ40_001880	COG0814	amino acid
LNQ40_001890	COG0826	peptidase U32
LNQ40_001895	COG0826	peptidase U32
LNQ40_001900	COG3154	lipid carrier protein
LNQ40_001905	COG3153	acetyltransferase
LNQ40_001910	COG2827	Endonuclease containing a URI domain
LNQ40_001915	COG0531	amino acid
LNQ40_001920	COG1982	Orn Lys Arg decarboxylase major
LNQ40_001930	COG3787	Belongs to the UPF0306 family
LNQ40_001935	COG0702	epimerase
LNQ40_001940	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LNQ40_001945	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
LNQ40_001950	COG3454	Phosphonate metabolism
LNQ40_001955	COG4778	phosphonate C-P lyase system protein PhnL
LNQ40_001960	COG4107	phosphonate C-P lyase system protein PhnK
LNQ40_001965	COG3627	carbon phosphorus lyase activity
LNQ40_001970	COG3626	phosphonate metabolism
LNQ40_001975	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
LNQ40_001980	COG3624	Phosphonate C-P lyase system protein PhnG
LNQ40_002000	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
LNQ40_002015	COG2927	DNA polymerase III (CHI subunit)
LNQ40_002020	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LNQ40_002025	COG0795	lipopolysaccharide-transporting ATPase activity
LNQ40_002030	COG0795	lipopolysaccharide-transporting ATPase activity
LNQ40_002040	COG0582	viral genome integration into host DNA
LNQ40_002045	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
LNQ40_002065	COG1196	nuclear chromosome segregation
LNQ40_002080	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LNQ40_002095	COG3077	Addiction module antitoxin, RelB DinJ family
LNQ40_002185	COG5492	domain, Protein
LNQ40_002205	COG3119	arylsulfatase activity
LNQ40_002210	COG1349	DNA-binding transcription factor activity
LNQ40_002220	COG2222	sugar isomerase
LNQ40_002225	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ40_002230	COG3715	PTS system
LNQ40_002235	COG3716	PTS system mannose fructose sorbose family IID component
LNQ40_002245	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LNQ40_002255	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ40_002265	COG0641	radical SAM
LNQ40_002270	COG3119	arylsulfatase activity
LNQ40_002295	COG0859	PFAM glycosyl transferase family 9
LNQ40_002310	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ40_002315	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LNQ40_002325	COG2376	Dihydroxyacetone kinase
LNQ40_002330	COG1461	Dihydroxyacetone kinase
LNQ40_002335	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
LNQ40_002335	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ40_002335	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNQ40_002375	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
LNQ40_002390	COG2823	Periplasmic or secreted lipoprotein
LNQ40_002400	COG4667	esterase of the alpha-beta hydrolase superfamily
LNQ40_002405	COG0084	hydrolase, TatD family'
LNQ40_002410	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LNQ40_002425	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LNQ40_002435	COG3726	membrane protein affecting hemolysin expression
LNQ40_002440	COG0560	Phosphoserine phosphatase
LNQ40_002455	COG0488	(ABC) transporter
LNQ40_002475	COG0741	lytic transglycosylase activity
LNQ40_002480	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
LNQ40_002485	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
LNQ40_002490	COG0406	alpha-ribazole phosphatase activity
LNQ40_002495	COG2207	Transcriptional regulator
LNQ40_002495	COG3708	Transcriptional regulator
LNQ40_002500	COG3045	CreA protein
LNQ40_002505	COG0745	RESPONSE REGULATOR receiver
LNQ40_002540	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LNQ40_002545	COG0521	Mo-molybdopterin cofactor biosynthetic process
LNQ40_002550	COG0477	Major facilitator Superfamily
LNQ40_002560	COG1584	GPR1 FUN34 yaaH family protein
LNQ40_002565	COG0443	Heat shock 70 kDa protein
LNQ40_002575	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LNQ40_002580	COG0583	DNA-binding transcription factor activity
LNQ40_002590	COG0196	riboflavin kinase activity
LNQ40_002600	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LNQ40_002605	COG1047	Peptidyl-prolyl cis-trans
LNQ40_002610	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LNQ40_002625	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LNQ40_002635	COG2966	Psort location CytoplasmicMembrane, score
LNQ40_002660	COG2967	ApaG domain
LNQ40_002665	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LNQ40_002670	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LNQ40_002680	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LNQ40_002690	COG0564	pseudouridine synthase activity
LNQ40_002695	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LNQ40_002700	COG0417	DNA replication proofreading
LNQ40_002705	COG0586	Pfam SNARE associated Golgi protein
LNQ40_002715	COG1178	ABC-type Fe3 transport system permease component
LNQ40_002720	COG4143	(ABC) transporter
LNQ40_002735	COG2814	Major facilitator Superfamily
LNQ40_002745	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LNQ40_002750	COG0473	3-isopropylmalate dehydrogenase activity
LNQ40_002765	COG1022	Amp-dependent synthetase and ligase
LNQ40_002770	COG0028	Belongs to the TPP enzyme family
LNQ40_002790	COG0675	Transposase, IS605 OrfB family
LNQ40_002805	COG0275	rRNA processing
LNQ40_002810	COG3116	cell division
LNQ40_002815	COG0768	penicillin binding
LNQ40_002820	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LNQ40_002825	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LNQ40_002840	COG0772	Belongs to the SEDS family
LNQ40_002845	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LNQ40_002850	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LNQ40_002860	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LNQ40_002865	COG0849	cell division
LNQ40_002870	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LNQ40_002895	COG0494	nUDIX hydrolase
LNQ40_002915	COG0516	GMP reductase activity
LNQ40_002920	COG1459	type II secretion system
LNQ40_002925	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LNQ40_002930	COG4969	Belongs to the N-Me-Phe pilin family
LNQ40_002945	COG3725	Membrane protein required for beta-lactamase induction
LNQ40_002950	COG1113	amino acid transport
LNQ40_002955	COG2186	Transcriptional regulator
LNQ40_002960	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
LNQ40_002965	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNQ40_002970	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNQ40_002980	COG1049	propionate catabolic process, 2-methylcitrate cycle
LNQ40_002985	COG3112	Uncharacterised protein family (UPF0231)
LNQ40_003000	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LNQ40_003010	COG2132	Multicopper oxidase
LNQ40_003020	COG0288	reversible hydration of carbon dioxide
LNQ40_003025	COG1131	(ABC) transporter
LNQ40_003030	COG0842	Transport permease protein
LNQ40_003035	COG0726	polysaccharide deacetylase
LNQ40_003040	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
LNQ40_003045	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LNQ40_003050	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LNQ40_003055	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LNQ40_003060	COG0617	tRNA 3'-terminal CCA addition
LNQ40_003075	COG1489	DNA binding
LNQ40_003080	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LNQ40_003085	COG1643	Atp-dependent helicase
LNQ40_003090	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LNQ40_003095	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LNQ40_003105	COG0316	Belongs to the HesB IscA family
LNQ40_003110	COG2860	membrane
LNQ40_003120	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LNQ40_003125	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LNQ40_003130	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LNQ40_003140	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LNQ40_003145	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LNQ40_003150	COG3956	TIGRFAM MazG family protein
LNQ40_003155	COG0504	CTP synthase activity
LNQ40_003165	COG0602	queuosine metabolic process
LNQ40_003170	COG0720	synthase
LNQ40_003175	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LNQ40_003185	COG0175	sulfate reduction
LNQ40_003200	COG2234	aminopeptidase activity
LNQ40_003205	COG1648	precorrin-2 dehydrogenase activity
LNQ40_003205	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LNQ40_003210	COG0175	sulfate reduction
LNQ40_003215	COG2895	sulfate adenylyltransferase (ATP) activity
LNQ40_003220	COG0529	Catalyzes the synthesis of activated sulfate
LNQ40_003230	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LNQ40_003240	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LNQ40_003245	COG0585	pseudouridine synthase activity
LNQ40_003250	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LNQ40_003260	COG1388	LysM domain
LNQ40_003260	COG4942	peptidase
LNQ40_003265	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LNQ40_003270	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LNQ40_003340	COG0784	Response regulator, receiver
LNQ40_003340	COG2205	protein histidine kinase activity
LNQ40_003360	COG0741	lytic transglycosylase activity
LNQ40_003490	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LNQ40_003510	COG3397	chitin binding
LNQ40_003520	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LNQ40_003565	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LNQ40_003575	COG3031	protein transport across the cell outer membrane
LNQ40_003600	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
LNQ40_003600	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
LNQ40_003615	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LNQ40_003620	COG2137	regulation of response to DNA damage stimulus
LNQ40_003625	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LNQ40_003630	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LNQ40_003665	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LNQ40_003670	COG1238	metal cluster binding
LNQ40_003675	COG2918	glutathione biosynthetic process
LNQ40_003680	COG1854	S-ribosylhomocysteine lyase activity
LNQ40_003685	COG4536	flavin adenine dinucleotide binding
LNQ40_003690	COG4137	Cytochrome C assembly protein
LNQ40_003695	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LNQ40_003705	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LNQ40_003710	COG0336	Belongs to the RNA methyltransferase TrmD family
LNQ40_003715	COG0335	large ribosomal subunit rRNA binding
LNQ40_003720	COG3137	Salt-induced outer membrane protein
LNQ40_003725	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LNQ40_003730	COG3279	Response regulator of the LytR AlgR family
LNQ40_003735	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LNQ40_003740	COG0287	Prephenate dehydrogenase
LNQ40_003740	COG1605	Chorismate mutase
LNQ40_003745	COG0077	Prephenate dehydratase
LNQ40_003745	COG1605	Chorismate mutase
LNQ40_003755	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LNQ40_003760	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LNQ40_003765	COG0564	pseudouridine synthase activity
LNQ40_003770	COG1496	oxidoreductase activity
LNQ40_003775	COG0542	response to heat
LNQ40_003810	COG3021	interspecies interaction between organisms
LNQ40_003815	COG1388	LysM domain
LNQ40_003815	COG0741	lytic transglycosylase activity
LNQ40_003825	COG2226	methyltransferase
LNQ40_003835	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LNQ40_003845	COG1960	acyl-CoA dehydrogenase activity
LNQ40_003850	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LNQ40_003855	COG0121	glutamine amidotransferase
LNQ40_003860	COG3034	peptidoglycan biosynthetic process
LNQ40_003870	COG1805	sodium ion transport
LNQ40_003875	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LNQ40_003880	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LNQ40_003885	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LNQ40_003895	COG1477	protein flavinylation
LNQ40_003900	COG2991	Protein conserved in bacteria
LNQ40_003910	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LNQ40_003915	COG2195	Cleaves the N-terminal amino acid of tripeptides
LNQ40_003920	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LNQ40_003925	COG1073	alpha beta
LNQ40_003940	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LNQ40_003975	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LNQ40_003995	COG4126	flavin adenine dinucleotide binding
LNQ40_004005	COG2974	May be involved in recombination
LNQ40_004010	COG1940	carbohydrate kinase activity
LNQ40_004015	COG0419	ATPase involved in DNA repair
LNQ40_004020	COG0420	3'-5' exonuclease activity
LNQ40_004025	COG0745	RESPONSE REGULATOR receiver
LNQ40_004030	COG5002	protein histidine kinase activity
LNQ40_004045	COG1113	amino acid transport
LNQ40_004050	COG0366	Alpha amylase catalytic
LNQ40_004055	COG0300	oxidoreductase activity
LNQ40_004060	COG0450	alkyl hydroperoxide reductase
LNQ40_004065	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
LNQ40_004080	COG1862	Preprotein translocase
LNQ40_004085	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LNQ40_004090	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LNQ40_004095	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LNQ40_004100	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LNQ40_004100	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LNQ40_004105	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LNQ40_004115	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LNQ40_004120	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LNQ40_004125	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LNQ40_004130	COG0142	geranyltranstransferase activity
LNQ40_004165	COG0693	protein deglycase activity
LNQ40_004170	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LNQ40_004175	COG1666	GTP binding
LNQ40_004180	COG2814	Major facilitator Superfamily
LNQ40_004190	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LNQ40_004195	COG1845	cytochrome c oxidase, subunit III
LNQ40_004200	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LNQ40_004205	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LNQ40_004215	COG2223	nitrite transmembrane transporter activity
LNQ40_004220	COG3056	Lipoprotein
LNQ40_004225	COG0271	Belongs to the BolA IbaG family
LNQ40_004235	COG0740	serine-type endopeptidase activity
LNQ40_004240	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LNQ40_004245	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LNQ40_004250	COG0776	regulation of translation
LNQ40_004255	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LNQ40_004260	COG1555	photosystem II stabilization
LNQ40_004265	COG0824	Thioesterase
LNQ40_004270	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LNQ40_004275	COG4533	DNA binding
LNQ40_004290	COG1522	sequence-specific DNA binding
LNQ40_004295	COG1132	(ABC) transporter
LNQ40_004300	COG1132	(ABC) transporter
LNQ40_004305	COG0347	Belongs to the P(II) protein family
LNQ40_004310	COG0004	ammonium transporteR
LNQ40_004315	COG1946	Acyl-CoA thioesterase
LNQ40_004320	COG3695	enzyme binding
LNQ40_004345	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LNQ40_004350	COG0254	rRNA binding
LNQ40_004355	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LNQ40_004360	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ40_004365	COG1309	transcriptional regulator
LNQ40_004370	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
LNQ40_004375	COG3264	Mechanosensitive ion channel
LNQ40_004375	COG1196	nuclear chromosome segregation
LNQ40_004390	COG2832	Protein of unknown function (DUF454)
LNQ40_004395	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LNQ40_004435	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LNQ40_004440	COG0326	Molecular chaperone. Has ATPase activity
LNQ40_004455	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
LNQ40_004460	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LNQ40_004465	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LNQ40_004465	COG4651	solute:proton antiporter activity
LNQ40_004470	COG0737	Belongs to the 5'-nucleotidase family
LNQ40_004475	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LNQ40_004480	COG3735	TraB family
LNQ40_004485	COG2217	Heavy metal translocating P-type atpase
LNQ40_004490	COG0789	Transcriptional regulator
LNQ40_004495	COG1585	Membrane protein implicated in regulation of membrane protease activity
LNQ40_004500	COG0330	HflC and HflK could
LNQ40_004505	COG3118	belongs to the thioredoxin family
LNQ40_004510	COG0300	oxidoreductase activity
LNQ40_004515	COG2755	lipolytic protein G-D-S-L family
LNQ40_004520	COG4181	ATPase activity
LNQ40_004525	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LNQ40_004530	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LNQ40_004535	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LNQ40_004545	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LNQ40_004570	COG3188	usher protein
LNQ40_004575	COG3121	Chaperone
LNQ40_004605	COG2501	S4 domain
LNQ40_004610	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LNQ40_004625	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LNQ40_004630	COG1393	Belongs to the ArsC family
LNQ40_004640	COG1022	Amp-dependent synthetase and ligase
LNQ40_004665	COG3038	cytochrome b561
LNQ40_004695	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LNQ40_004705	COG1215	transferase activity, transferring glycosyl groups
LNQ40_004725	COG3250	beta-galactosidase activity
LNQ40_004740	COG1309	transcriptional regulator
LNQ40_004770	COG2197	response regulator
LNQ40_004775	COG1278	Cold shock
LNQ40_004795	COG3706	GGDEF domain
LNQ40_004805	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LNQ40_004815	COG2921	Belongs to the UPF0250 family
LNQ40_004820	COG1686	Belongs to the peptidase S11 family
LNQ40_004825	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LNQ40_004830	COG0772	Belongs to the SEDS family
LNQ40_004835	COG0768	penicillin binding
LNQ40_004840	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LNQ40_004845	COG0799	negative regulation of ribosome biogenesis
LNQ40_004850	COG0582	viral genome integration into host DNA
LNQ40_004965	COG0305	Participates in initiation and elongation during chromosome replication
LNQ40_005015	COG3646	Phage regulatory protein
LNQ40_005040	COG3567	Phage-associated protein, HI1409 family
LNQ40_005045	COG2369	cell adhesion
LNQ40_005175	COG5301	cellulose 1,4-beta-cellobiosidase activity
LNQ40_005185	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LNQ40_005190	COG1466	dna polymerase III delta subunit
LNQ40_005195	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
LNQ40_005205	COG2888	peptidyl-tyrosine sulfation
LNQ40_005210	COG1126	abc transporter atp-binding protein
LNQ40_005215	COG0765	amino acid transport
LNQ40_005220	COG0765	amino acid transport
LNQ40_005230	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LNQ40_005235	COG4535	Mg2 and Co2 transporter CorC
LNQ40_005240	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LNQ40_005245	COG1702	phosphate starvation-inducible protein PhoH
LNQ40_005250	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LNQ40_005255	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LNQ40_005290	COG0367	asparagine synthase
LNQ40_005295	COG0647	UMP catabolic process
LNQ40_005300	COG1940	carbohydrate kinase activity
LNQ40_005300	COG1846	Transcriptional regulator
LNQ40_005305	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LNQ40_005315	COG1263	PTS System
LNQ40_005315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ40_005315	COG2190	(PTS) system
LNQ40_005340	COG0675	Transposase, IS605 OrfB family
LNQ40_005350	COG0735	belongs to the Fur family
LNQ40_005360	COG0840	transmembrane signaling receptor activity
LNQ40_005370	COG0596	Alpha beta hydrolase
LNQ40_005375	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
LNQ40_005380	COG0033	Phosphoglucomutase
LNQ40_005390	COG0745	RESPONSE REGULATOR receiver
LNQ40_005395	COG2205	protein histidine kinase activity
LNQ40_005400	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
LNQ40_005405	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
LNQ40_005425	COG3272	Protein of unknown function (DUF1722)
LNQ40_005430	COG0415	Belongs to the DNA photolyase family
LNQ40_005435	COG5212	phosphodiesterase
LNQ40_005440	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LNQ40_005445	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LNQ40_005450	COG1984	allophanate hydrolase subunit 2
LNQ40_005455	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LNQ40_005490	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LNQ40_005495	COG1053	succinate dehydrogenase
LNQ40_005500	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LNQ40_005505	COG0567	Dehydrogenase, E1 component
LNQ40_005510	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNQ40_005515	COG0045	succinate-CoA ligase (ADP-forming) activity
LNQ40_005520	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LNQ40_005525	COG0737	Belongs to the 5'-nucleotidase family
LNQ40_005530	COG1271	oxidase subunit
LNQ40_005535	COG1294	oxidase, subunit
LNQ40_005540	COG4890	Cyd operon protein YbgT
LNQ40_005545	COG3790	cyd operon protein YbgE
LNQ40_005550	COG0824	Thioesterase
LNQ40_005555	COG0811	peptide transport
LNQ40_005560	COG0848	biopolymer transport protein
LNQ40_005565	COG3064	Membrane
LNQ40_005565	COG3064	Membrane
LNQ40_005570	COG0823	Involved in the tonB-independent uptake of proteins
LNQ40_005575	COG2885	chlorophyll binding
LNQ40_005580	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
LNQ40_005610	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LNQ40_005620	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ40_005620	COG2205	protein histidine kinase activity
LNQ40_005630	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LNQ40_005635	COG0588	phosphoglycerate mutase activity
LNQ40_005645	COG2017	converts alpha-aldose to the beta-anomer
LNQ40_005650	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LNQ40_005655	COG1085	galactose-1-phosphate uridylyltransferase
LNQ40_005660	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LNQ40_005675	COG3585	molybdate ion transport
LNQ40_005675	COG2005	Transcriptional regulator
LNQ40_005685	COG0725	ABC transporter, periplasmic molybdate-binding protein
LNQ40_005690	COG0582	viral genome integration into host DNA
LNQ40_005860	COG0616	signal peptide processing
LNQ40_005900	COG4386	tail sheath protein
LNQ40_005940	COG3299	homolog of phage Mu protein gp47
LNQ40_005970	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LNQ40_005985	COG4149	molybdate abc transporter
LNQ40_005995	COG0561	phosphatase activity
LNQ40_006000	COG2706	6-phosphogluconolactonase activity
LNQ40_006015	COG0156	8-amino-7-oxononanoate synthase activity
LNQ40_006020	COG2226	methyltransferase
LNQ40_006035	COG0556	nucleotide-excision repair
LNQ40_006040	COG4628	conserved protein (DUF2132)
LNQ40_006055	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ40_006060	COG1120	ATPase activity
LNQ40_006065	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LNQ40_006070	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LNQ40_006080	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LNQ40_006085	COG0314	molybdopterin synthase activity
LNQ40_006090	COG0670	Belongs to the BI1 family
LNQ40_006095	COG0842	Transport permease protein
LNQ40_006100	COG0842	Transport permease protein
LNQ40_006105	COG1131	(ABC) transporter
LNQ40_006110	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ40_006115	COG1309	transcriptional regulator
LNQ40_006120	COG0513	Belongs to the DEAD box helicase family
LNQ40_006125	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LNQ40_006135	COG1686	Belongs to the peptidase S11 family
LNQ40_006140	COG0277	FAD linked oxidase domain protein
LNQ40_006160	COG2261	transglycosylase associated protein
LNQ40_006170	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
LNQ40_006180	COG3639	organic phosphonate transmembrane transporter activity
LNQ40_006185	COG4807	Protein conserved in bacteria
LNQ40_006190	COG2897	thiosulfate sulfurtransferase activity
LNQ40_006195	COG1732	Glycine betaine
LNQ40_006200	COG1174	glycine betaine transport
LNQ40_006205	COG1125	glycine betaine transport
LNQ40_006210	COG1174	glycine betaine transport
LNQ40_006215	COG0531	amino acid
LNQ40_006220	COG1982	Orn Lys Arg decarboxylase major
LNQ40_006230	COG0697	spore germination
LNQ40_006245	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LNQ40_006250	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
LNQ40_006255	COG1126	abc transporter atp-binding protein
LNQ40_006260	COG0765	amino acid transport
LNQ40_006265	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ40_006285	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LNQ40_006290	COG2239	Acts as a magnesium transporter
LNQ40_006295	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LNQ40_006300	COG0488	(ABC) transporter
LNQ40_006305	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LNQ40_006310	COG0303	'Molybdopterin
LNQ40_006330	COG0583	DNA-binding transcription factor activity
LNQ40_006335	COG0477	Major facilitator Superfamily
LNQ40_006340	COG0302	gtp cyclohydrolase
LNQ40_006345	COG2311	Membrane
LNQ40_006370	COG2949	membrane
LNQ40_006375	COG0281	malic enzyme
LNQ40_006385	COG0675	Transposase, IS605 OrfB family
LNQ40_006400	COG0583	DNA-binding transcription factor activity
LNQ40_006410	COG1346	cytolysis
LNQ40_006415	COG1380	Effector of murein hydrolase LrgA
LNQ40_006425	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LNQ40_006425	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LNQ40_006430	COG0489	protein tyrosine kinase activity
LNQ40_006435	COG0572	uridine kinase
LNQ40_006440	COG0717	Belongs to the dCTP deaminase family
LNQ40_006445	COG2982	Protein involved in outer membrane biogenesis
LNQ40_006450	COG3069	C4-dicarboxylate transmembrane transporter activity
LNQ40_006455	COG1253	flavin adenine dinucleotide binding
LNQ40_006460	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LNQ40_006465	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LNQ40_006470	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LNQ40_006480	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LNQ40_006480	COG0140	phosphoribosyl-ATP diphosphatase activity
LNQ40_006490	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LNQ40_006500	COG0131	Imidazoleglycerol-phosphate dehydratase
LNQ40_006500	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LNQ40_006505	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LNQ40_006510	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LNQ40_006525	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LNQ40_006530	COG0625	glutathione transferase activity
LNQ40_006545	COG0626	cystathionine gamma-synthase activity
LNQ40_006555	COG1686	Belongs to the peptidase S11 family
LNQ40_006560	COG1760	l-serine dehydratase
LNQ40_006565	COG0814	amino acid
LNQ40_006570	COG1349	DNA-binding transcription factor activity
LNQ40_006580	COG0671	phosphoesterase, PA-phosphatase related
LNQ40_006590	COG0569	domain protein
LNQ40_006590	COG2985	domain, Protein
LNQ40_006610	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LNQ40_006615	COG3842	ATPase activity
LNQ40_006620	COG1176	ABC-type spermidine putrescine transport system, permease component I
LNQ40_006625	COG1177	transmembrane transport
LNQ40_006640	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ40_006645	COG4160	amino acid transport
LNQ40_006650	COG4215	(ABC) transporter
LNQ40_006655	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ40_006660	COG1126	abc transporter atp-binding protein
LNQ40_006670	COG0393	Putative heavy-metal-binding
LNQ40_006675	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LNQ40_006680	COG0702	epimerase
LNQ40_006685	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LNQ40_006690	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LNQ40_006695	COG1151	hydroxylamine reductase activity
LNQ40_006700	COG2431	L-lysine efflux transmembrane transporter activity
LNQ40_006705	COG3593	DNA synthesis involved in DNA repair
LNQ40_006710	COG2990	Protein conserved in bacteria
LNQ40_006715	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ40_006725	COG1278	Cold shock
LNQ40_006730	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LNQ40_006735	COG0542	response to heat
LNQ40_006740	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LNQ40_006750	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LNQ40_006760	COG0492	ferredoxin-NADP+ reductase activity
LNQ40_006765	COG1522	sequence-specific DNA binding
LNQ40_006770	COG1674	ftsk spoiiie
LNQ40_006770	COG3107	peptidoglycan biosynthetic process
LNQ40_006775	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LNQ40_006780	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LNQ40_006785	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LNQ40_006790	COG2814	Major facilitator Superfamily
LNQ40_006795	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LNQ40_006800	COG1882	Formate acetyltransferase
LNQ40_006805	COG2116	formate transmembrane transporter activity
LNQ40_006810	COG1944	ATP diphosphatase activity
LNQ40_006815	COG0252	asparaginase activity
LNQ40_006825	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LNQ40_006835	COG0539	negative regulation of cytoplasmic translation
LNQ40_006845	COG0658	competence protein
LNQ40_006845	COG2333	competence protein COMEC
LNQ40_006855	COG1663	tetraacyldisaccharide 4'-kinase activity
LNQ40_006860	COG5383	Protein conserved in bacteria
LNQ40_006870	COG1278	Cold shock
LNQ40_006875	COG2835	tetraacyldisaccharide 4'-kinase activity
LNQ40_006880	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LNQ40_006885	COG3173	Aminoglycoside phosphotransferase
LNQ40_006890	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LNQ40_006895	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LNQ40_006900	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
LNQ40_006910	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LNQ40_006915	COG2989	Protein conserved in bacteria
LNQ40_006920	COG3108	Peptidase M15
LNQ40_006925	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LNQ40_006930	COG1448	Aminotransferase
LNQ40_006945	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LNQ40_006950	COG0308	aminopeptidase N
LNQ40_006955	COG0167	dihydroorotate dehydrogenase activity
LNQ40_006965	COG0633	Ferredoxin
LNQ40_006965	COG3217	Mosc domain protein beta barrel domain protein
LNQ40_006970	COG0116	Belongs to the methyltransferase superfamily
LNQ40_006970	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LNQ40_006975	COG0488	(ABC) transporter
LNQ40_006980	COG2995	paraquat-inducible protein a
LNQ40_006985	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LNQ40_006985	COG3008	intermembrane lipid transfer
LNQ40_006990	COG3009	Protein conserved in bacteria
LNQ40_006995	COG3130	regulation of translation
LNQ40_007000	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LNQ40_007005	COG1067	ATP-dependent peptidase activity
LNQ40_007010	COG3120	sequence-specific DNA binding
LNQ40_007020	COG5404	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division
LNQ40_007025	COG3070	regulator of competence-specific genes
LNQ40_007030	COG1289	transmembrane transporter activity
LNQ40_007035	COG3304	Inner membrane component domain
LNQ40_007040	COG0210	DNA helicase
LNQ40_007045	COG1803	Methylglyoxal synthase
LNQ40_007055	COG1832	CoA-binding protein
LNQ40_007060	COG3785	DNA binding
LNQ40_007065	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LNQ40_007070	COG1254	Belongs to the acylphosphatase family
LNQ40_007075	COG2920	part of a sulfur-relay system
LNQ40_007085	COG0288	reversible hydration of carbon dioxide
LNQ40_007105	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
LNQ40_007110	COG2943	transferase activity, transferring hexosyl groups
LNQ40_007130	COG1560	Kdo2-lipid A biosynthetic process
LNQ40_007140	COG0628	permease
LNQ40_007165	COG0418	dihydroorotase activity
LNQ40_007170	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LNQ40_007180	COG1530	ribonuclease E activity
LNQ40_007185	COG0564	pseudouridine synthase activity
LNQ40_007190	COG0424	maF-like protein
LNQ40_007195	COG1399	metal-binding, possibly nucleic acid-binding protein
LNQ40_007200	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LNQ40_007210	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LNQ40_007215	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LNQ40_007225	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LNQ40_007230	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LNQ40_007235	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LNQ40_007240	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LNQ40_007245	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LNQ40_007250	COG0470	DNA polymerase III
LNQ40_007255	COG0084	hydrolase, TatD family'
LNQ40_007260	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ40_007260	COG1263	PTS System
LNQ40_007265	COG0537	adenosine 5'-monophosphoramidase activity
LNQ40_007270	COG5633	Lipoprotein
LNQ40_007275	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
LNQ40_007290	COG3150	esterase
LNQ40_007295	COG1252	NADH dehydrogenase
LNQ40_007300	COG3134	Outer membrane lipoprotein
LNQ40_007305	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LNQ40_007310	COG4591	ABC-type transport system involved in lipoprotein release permease component
LNQ40_007320	COG4591	ABC-type transport system involved in lipoprotein release permease component
LNQ40_007340	COG2850	peptidyl-arginine hydroxylation
LNQ40_007345	COG2205	protein histidine kinase activity
LNQ40_007350	COG0745	RESPONSE REGULATOR receiver
LNQ40_007360	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LNQ40_007370	COG0482	sulfurtransferase activity
LNQ40_007380	COG1187	pseudouridine synthase activity
LNQ40_007385	COG0538	isocitrate dehydrogenase activity
LNQ40_007390	COG2771	luxR family
LNQ40_007395	COG3916	Acyl-homoserine-lactone synthase
LNQ40_007400	COG2723	6-phospho-beta-galactosidase activity
LNQ40_007410	COG0339	signal peptide processing
LNQ40_007415	COG0840	transmembrane signaling receptor activity
LNQ40_007420	COG3493	citrate carrier protein
LNQ40_007430	COG0675	Transposase, IS605 OrfB family
LNQ40_007440	COG4565	transcriptional regulatory protein
LNQ40_007445	COG3290	protein histidine kinase activity
LNQ40_007450	COG0471	metal ion transport
LNQ40_007490	COG4977	sequence-specific DNA binding
LNQ40_007495	COG1702	phosphate starvation-inducible protein PhoH
LNQ40_007500	COG0387	Pfam Sodium calcium exchanger
LNQ40_007505	COG2375	cellular response to nickel ion
LNQ40_007510	COG3850	Histidine kinase
LNQ40_007520	COG1294	oxidase, subunit
LNQ40_007525	COG1271	oxidase subunit
LNQ40_007530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LNQ40_007535	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LNQ40_007540	COG3138	arginine N-succinyltransferase
LNQ40_007550	COG3724	N-succinylarginine dihydrolase activity
LNQ40_007570	COG1228	amidohydrolase
LNQ40_007580	COG0402	S-adenosylhomocysteine deaminase activity
LNQ40_007600	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
LNQ40_007605	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
LNQ40_007610	COG3383	formate dehydrogenase (NAD+) activity
LNQ40_007615	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ40_007620	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
LNQ40_007630	COG3260	NADH ubiquinone oxidoreductase 20
LNQ40_007635	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ40_007640	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
LNQ40_007640	COG3261	NADH dehydrogenase
LNQ40_007645	COG0650	Formate hydrogenlyase subunit 4
LNQ40_007650	COG0651	ATP synthesis coupled electron transport
LNQ40_007655	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ40_007665	COG0375	protein maturation
LNQ40_007670	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
LNQ40_007675	COG0298	carbon dioxide binding
LNQ40_007680	COG0409	Hydrogenase expression formation protein
LNQ40_007685	COG0309	Hydrogenase expression formation protein (HypE)
LNQ40_007720	COG3708	Transcriptional regulator
LNQ40_007720	COG2207	Transcriptional regulator
LNQ40_007725	COG0012	GTP binding
LNQ40_007735	COG0193	aminoacyl-tRNA hydrolase activity
LNQ40_007745	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LNQ40_007755	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LNQ40_007760	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LNQ40_007765	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LNQ40_007770	COG2890	protein-(glutamine-N5) methyltransferase activity
LNQ40_007785	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LNQ40_007790	COG0659	secondary active sulfate transmembrane transporter activity
LNQ40_007795	COG3706	GGDEF domain
LNQ40_007820	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LNQ40_007830	COG3381	protein complex oligomerization
LNQ40_007850	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNQ40_007860	COG0673	inositol 2-dehydrogenase activity
LNQ40_007865	COG0728	peptidoglycan biosynthetic process
LNQ40_007895	COG3102	Protein conserved in bacteria
LNQ40_007900	COG3142	Participates in the control of copper homeostasis
LNQ40_007915	COG3788	relative of glutathione S-transferase, MAPEG superfamily
LNQ40_007920	COG1801	Protein of unknown function DUF72
LNQ40_007930	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LNQ40_007935	COG0494	nUDIX hydrolase
LNQ40_007945	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LNQ40_007955	COG2255	four-way junction helicase activity
LNQ40_007960	COG3104	oligopeptide transport
LNQ40_007965	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LNQ40_007970	COG1121	(ABC) transporter
LNQ40_007975	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
LNQ40_007980	COG0739	heme binding
LNQ40_007985	COG1560	Kdo2-lipid A biosynthetic process
LNQ40_007990	COG0469	pyruvate kinase activity
LNQ40_007995	COG1737	Transcriptional regulator
LNQ40_008000	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LNQ40_008005	COG0800	Aldolase
LNQ40_008015	COG2076	Multidrug Resistance protein
LNQ40_008020	COG0251	oxidation-reduction process
LNQ40_008025	COG1199	ATP-dependent helicase activity
LNQ40_008030	COG1214	PFAM Peptidase M22, glycoprotease
LNQ40_008035	COG3065	identical protein binding
LNQ40_008040	COG0318	PFAM AMP-dependent synthetase and ligase
LNQ40_008045	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LNQ40_008050	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LNQ40_008055	COG2894	cell division
LNQ40_008060	COG0850	regulation of cytokinetic process
LNQ40_008065	COG3100	YcgL domain-containing protein
LNQ40_008070	COG0179	Fumarylacetoacetate (FAA) hydrolase
LNQ40_008075	COG2983	Belongs to the UPF0260 family
LNQ40_008095	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LNQ40_008105	COG2719	SpoVR family
LNQ40_008110	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LNQ40_008115	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LNQ40_008120	COG2814	Major facilitator Superfamily
LNQ40_008130	COG2199	diguanylate cyclase activity
LNQ40_008130	COG2202	Pas domain
LNQ40_008130	COG2200	EAL domain
LNQ40_008150	COG2718	Belongs to the UPF0229 family
LNQ40_008155	COG2766	serine protein kinase
LNQ40_008160	COG3713	MltA-interacting MipA family protein
LNQ40_008165	COG2194	sulfuric ester hydrolase activity
LNQ40_008180	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LNQ40_008185	COG3139	Protein of unknown function (DUF1315)
LNQ40_008190	COG1335	isochorismatase
LNQ40_008195	COG0252	asparaginase activity
LNQ40_008200	COG0616	signal peptide processing
LNQ40_008205	COG0778	Nitroreductase
LNQ40_008215	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LNQ40_008225	COG0494	nUDIX hydrolase
LNQ40_008230	COG0708	Exodeoxyribonuclease III
LNQ40_008265	COG0788	formyltetrahydrofolate deformylase activity
LNQ40_008275	COG1752	Esterase of the alpha-beta hydrolase superfamily
LNQ40_008280	COG0745	RESPONSE REGULATOR receiver
LNQ40_008300	COG1454	alcohol dehydrogenase
LNQ40_008300	COG1012	belongs to the aldehyde dehydrogenase family
LNQ40_008310	COG2095	MarC family integral membrane protein
LNQ40_008315	COG4166	transmembrane transport
LNQ40_008330	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNQ40_008345	COG3099	Belongs to the UPF0263 family
LNQ40_008350	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LNQ40_008370	COG2350	Protein conserved in bacteria
LNQ40_008385	COG3710	Transcriptional regulator
LNQ40_008420	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LNQ40_008445	COG0727	PFAM Uncharacterised protein family (UPF0153)
LNQ40_008450	COG3047	cAMP biosynthetic process
LNQ40_008465	COG0133	tryptophan synthase activity
LNQ40_008470	COG0134	indole-3-glycerol-phosphate synthase activity
LNQ40_008470	COG0135	phosphoribosylanthranilate isomerase activity
LNQ40_008480	COG0512	Glutamine amidotransferase of anthranilate synthase
LNQ40_008490	COG0613	PHP domain protein
LNQ40_008495	COG0009	L-threonylcarbamoyladenylate synthase
LNQ40_008500	COG1187	pseudouridine synthase activity
LNQ40_008510	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ40_008515	COG0616	signal peptide processing
LNQ40_008530	COG0583	DNA-binding transcription factor activity
LNQ40_008545	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LNQ40_008555	COG0671	phosphoesterase, PA-phosphatase related
LNQ40_008560	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
LNQ40_008565	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LNQ40_008585	COG0023	Translation Initiation Factor
LNQ40_008595	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LNQ40_008600	COG3447	MASE1 domain protein
LNQ40_008600	COG5002	protein histidine kinase activity
LNQ40_008600	COG5001	Diguanylate cyclase
LNQ40_008605	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
LNQ40_008610	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LNQ40_008620	COG4659	FMN binding
LNQ40_008630	COG2207	Transcriptional regulator
LNQ40_008630	COG3708	Transcriptional regulator
LNQ40_008645	COG4657	Part of a membrane complex involved in electron transport
LNQ40_008655	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LNQ40_008665	COG0673	inositol 2-dehydrogenase activity
LNQ40_008670	COG0385	Bile acid
LNQ40_008675	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LNQ40_008680	COG5339	Protein conserved in bacteria
LNQ40_008685	COG1482	cell wall glycoprotein biosynthetic process
LNQ40_008690	COG0114	fumarate hydratase activity
LNQ40_008700	COG1940	carbohydrate kinase activity
LNQ40_008705	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LNQ40_008725	COG1742	UPF0060 membrane protein
LNQ40_008730	COG4221	oxidoreductase activity
LNQ40_008735	COG3023	N-Acetylmuramoyl-L-alanine amidase
LNQ40_008760	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LNQ40_008790	COG2015	COG2015, Alkyl sulfatase and related hydrolases
LNQ40_008810	COG1011	Hydrolase
LNQ40_008820	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
LNQ40_008825	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LNQ40_008830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LNQ40_008835	COG0589	response to stress
LNQ40_008865	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
LNQ40_008870	COG3623	hexulose-6-phosphate isomerase
LNQ40_008875	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LNQ40_008880	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LNQ40_008890	COG0531	amino acid
LNQ40_008900	COG0745	RESPONSE REGULATOR receiver
LNQ40_008905	COG2205	protein histidine kinase activity
LNQ40_008920	COG2207	Transcriptional regulator
LNQ40_008925	COG1881	PFAM PEBP family protein
LNQ40_008935	COG3591	Belongs to the peptidase S1B family
LNQ40_008940	COG1643	Atp-dependent helicase
LNQ40_008945	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LNQ40_008950	COG3784	Protein of unknown function (DUF1318)
LNQ40_008965	COG2911	Protein conserved in bacteria
LNQ40_008970	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LNQ40_008975	COG3187	Heat shock protein
LNQ40_008980	COG3042	response to heat
LNQ40_008985	COG1285	pathogenesis
LNQ40_008995	COG1013	pyruvate-flavodoxin oxidoreductase activity
LNQ40_008995	COG0674	pyruvate-flavodoxin oxidoreductase activity
LNQ40_008995	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ40_008995	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LNQ40_009010	COG4166	transmembrane transport
LNQ40_009015	COG2866	Carboxypeptidase
LNQ40_009020	COG4948	Mandelate Racemase Muconate Lactonizing
LNQ40_009025	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LNQ40_009035	COG5642	Protein of unknown function (DUF2384)
LNQ40_009040	COG5654	RES domain protein
LNQ40_009045	COG3768	UPF0283 membrane protein
LNQ40_009050	COG3106	COG3106 Predicted ATPase
LNQ40_009060	COG1983	PspC domain protein
LNQ40_009070	COG1842	Phage shock protein A
LNQ40_009075	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LNQ40_009090	COG4166	transmembrane transport
LNQ40_009100	COG4171	peptide transport system, permease
LNQ40_009105	COG4172	Belongs to the ABC transporter superfamily
LNQ40_009110	COG4172	Belongs to the ABC transporter superfamily
LNQ40_009120	COG3104	oligopeptide transport
LNQ40_009130	COG0484	heat shock protein binding
LNQ40_009175	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LNQ40_009180	COG3133	Outer membrane lipoprotein
LNQ40_009185	COG1846	Transcriptional regulator
LNQ40_009195	COG4989	oxidoreductase activity
LNQ40_009200	COG3313	Fe-S protein
LNQ40_009205	COG2194	sulfuric ester hydrolase activity
LNQ40_009210	COG1309	transcriptional regulator
LNQ40_009215	COG1902	pentaerythritol trinitrate reductase activity
LNQ40_009230	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LNQ40_009235	COG0791	NLP P60 protein
LNQ40_009240	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LNQ40_009250	COG1609	Transcriptional regulator
LNQ40_009255	COG0583	DNA-binding transcription factor activity
LNQ40_009260	COG2814	Major facilitator Superfamily
LNQ40_009265	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LNQ40_009270	COG0307	riboflavin synthase, alpha
LNQ40_009275	COG0534	Mate efflux family protein
LNQ40_009310	COG1376	ErfK ybiS ycfS ynhG family protein
LNQ40_009310	COG1388	LysM domain
LNQ40_009315	COG2166	iron-sulfur cluster assembly
LNQ40_009325	COG0719	Fe-S assembly protein
LNQ40_009330	COG0396	ATPase activity
LNQ40_009335	COG0719	Fe-S assembly protein
LNQ40_009340	COG0316	Belongs to the HesB IscA family
LNQ40_009345	COG2050	protein possibly involved in aromatic compounds catabolism
LNQ40_009350	COG0247	lactate metabolic process
LNQ40_009350	COG0277	FAD linked oxidase domain protein
LNQ40_009355	COG0628	permease
LNQ40_009365	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNQ40_009365	COG0574	Belongs to the PEP-utilizing enzyme family
LNQ40_009370	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LNQ40_009375	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LNQ40_009385	COG4771	TonB-dependent receptor
LNQ40_009390	COG3720	iron ion transport
LNQ40_009395	COG4558	Periplasmic binding protein
LNQ40_009400	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ40_009405	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LNQ40_009415	COG0095	Lipoate-protein ligase
LNQ40_009420	COG0791	NLP P60 protein
LNQ40_009425	COG2076	Multidrug Resistance protein
LNQ40_009430	COG2076	Multidrug Resistance protein
LNQ40_009435	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LNQ40_009450	COG0463	Glycosyl transferase, family 2
LNQ40_009455	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LNQ40_009465	COG4139	cobalamin transport
LNQ40_009510	COG0776	regulation of translation
LNQ40_009580	COG0803	Belongs to the bacterial solute-binding protein 9 family
LNQ40_009585	COG1121	(ABC) transporter
LNQ40_009590	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LNQ40_009595	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LNQ40_009600	COG3001	Fructosamine kinase
LNQ40_009610	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LNQ40_009615	COG1988	membrane-bound metal-dependent
LNQ40_009620	COG1823	symporter activity
LNQ40_009625	COG3023	N-Acetylmuramoyl-L-alanine amidase
LNQ40_009635	COG2814	Major facilitator Superfamily
LNQ40_009645	COG0501	Belongs to the peptidase M48B family
LNQ40_009650	COG0793	Belongs to the peptidase S41A family
LNQ40_009660	COG1956	GAF domain-containing protein
LNQ40_009665	COG2995	paraquat-inducible protein a
LNQ40_009670	COG3008	intermembrane lipid transfer
LNQ40_009675	COG2203	Gaf domain
LNQ40_009675	COG4251	negative regulation of phosphorylation
LNQ40_009675	COG5001	Diguanylate cyclase
LNQ40_009675	COG3706	GGDEF domain
LNQ40_009755	COG1276	copper resistance
LNQ40_009760	COG2372	response to copper ion
LNQ40_009765	COG1528	Iron-storage protein
LNQ40_009780	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LNQ40_009785	COG1770	oligopeptidase
LNQ40_009795	COG3097	Belongs to the UPF0267 family
LNQ40_009800	COG3141	response to X-ray
LNQ40_009805	COG0513	Belongs to the DEAD box helicase family
LNQ40_009825	COG0494	nUDIX hydrolase
LNQ40_009830	COG1760	l-serine dehydratase
LNQ40_009835	COG1253	flavin adenine dinucleotide binding
LNQ40_009840	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ40_009840	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ40_009845	COG3715	PTS system
LNQ40_009850	COG3716	PTS system mannose fructose sorbose family IID component
LNQ40_009855	COG4811	Protein of unknown function (DUF986)
LNQ40_009860	COG1971	Probably functions as a manganese efflux pump
LNQ40_009880	COG1960	acyl-CoA dehydrogenase activity
LNQ40_009890	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
LNQ40_009920	COG2226	methyltransferase
LNQ40_009925	COG0768	penicillin binding
LNQ40_009930	COG1496	oxidoreductase activity
LNQ40_009950	COG1113	amino acid transport
LNQ40_009985	COG2207	Transcriptional regulator
LNQ40_010005	COG1132	(ABC) transporter
LNQ40_010015	COG2203	Gaf domain
LNQ40_010015	COG3706	GGDEF domain
LNQ40_010015	COG4251	negative regulation of phosphorylation
LNQ40_010015	COG5001	Diguanylate cyclase
LNQ40_010035	COG1181	Belongs to the D-alanine--D-alanine ligase family
LNQ40_010055	COG1278	Cold shock
LNQ40_010060	COG1278	Cold shock
LNQ40_010065	COG1278	Cold shock
LNQ40_010080	COG2169	Transcriptional regulator
LNQ40_010080	COG1917	Cupin 2, conserved barrel domain protein
LNQ40_010085	COG1447	Phosphotransferase system cellobiose-specific component IIA
LNQ40_010090	COG2723	6-phospho-beta-galactosidase activity
LNQ40_010095	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LNQ40_010100	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LNQ40_010105	COG1187	pseudouridine synthase activity
LNQ40_010120	COG3122	Protein conserved in bacteria
LNQ40_010125	COG1757	Na H antiporter
LNQ40_010140	COG2235	arginine
LNQ40_010155	COG0076	glutamate decarboxylase activity
LNQ40_010160	COG0531	amino acid
LNQ40_010195	COG2153	protein acetylation
LNQ40_010200	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LNQ40_010235	COG0840	transmembrane signaling receptor activity
LNQ40_010240	COG2801	Transposase and inactivated derivatives
LNQ40_010360	COG4974	Belongs to the 'phage' integrase family
LNQ40_010365	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LNQ40_010420	COG4695	Portal protein
LNQ40_010515	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
LNQ40_010575	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LNQ40_010580	COG0322	excinuclease ABC activity
LNQ40_010585	COG2197	response regulator
LNQ40_010610	COG1113	amino acid transport
LNQ40_010620	COG0531	amino acid
LNQ40_010625	COG3710	Transcriptional regulator
LNQ40_010630	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LNQ40_010635	COG0506	proline dehydrogenase activity
LNQ40_010635	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LNQ40_010635	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LNQ40_010640	COG1126	abc transporter atp-binding protein
LNQ40_010645	COG0765	amino acid transport
LNQ40_010650	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ40_010655	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LNQ40_010665	COG1191	sigma factor activity
LNQ40_010705	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LNQ40_010710	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LNQ40_010725	COG1677	Flagellar hook-basal body complex protein FliE
LNQ40_010735	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LNQ40_010740	COG1317	bacterial-type flagellum organization
LNQ40_010745	COG1157	protein secretion by the type III secretion system
LNQ40_010760	COG1580	Controls the rotational direction of flagella during chemotaxis
LNQ40_010840	COG1558	bacterial-type flagellum-dependent cell motility
LNQ40_010845	COG1815	bacterial-type flagellum-dependent cell motility
LNQ40_010855	COG2747	anti-sigma28 factor FlgM
LNQ40_010860	COG3418	PFAM FlgN family protein
LNQ40_010870	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LNQ40_010875	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LNQ40_010880	COG4935	Belongs to the peptidase S8 family
LNQ40_010880	COG1404	Belongs to the peptidase S8 family
LNQ40_010885	COG2197	response regulator
LNQ40_010900	COG3188	usher protein
LNQ40_010905	COG3121	Chaperone
LNQ40_010915	COG3539	Fimbrial protein
LNQ40_010945	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
LNQ40_010950	COG0745	RESPONSE REGULATOR receiver
LNQ40_010960	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LNQ40_010965	COG0840	transmembrane signaling receptor activity
LNQ40_010970	COG0840	transmembrane signaling receptor activity
LNQ40_010975	COG0835	chemotaxis
LNQ40_010980	COG2198	Histidine kinase
LNQ40_010980	COG0643	Histidine kinase
LNQ40_010985	COG1360	Flagellar Motor Protein
LNQ40_011005	COG0589	response to stress
LNQ40_011010	COG1285	pathogenesis
LNQ40_011015	COG0840	transmembrane signaling receptor activity
LNQ40_011035	COG1609	Transcriptional regulator
LNQ40_011045	COG0604	alcohol dehydrogenase
LNQ40_011045	COG3321	synthase
LNQ40_011045	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ40_011235	COG3772	lysozyme
LNQ40_011290	COG1178	ABC-type Fe3 transport system permease component
LNQ40_011290	COG1674	ftsk spoiiie
LNQ40_011415	COG0471	metal ion transport
LNQ40_011430	COG3051	citrate lyase alpha subunit
LNQ40_011435	COG2301	Belongs to the HpcH HpaI aldolase family
LNQ40_011440	COG3052	prosthetic group binding
LNQ40_011445	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
LNQ40_011450	COG3290	protein histidine kinase activity
LNQ40_011455	COG4565	transcriptional regulatory protein
LNQ40_011470	COG2271	Major facilitator Superfamily
LNQ40_011475	COG1840	ABC-type Fe3 transport system, periplasmic component
LNQ40_011485	COG3842	ATPase activity
LNQ40_011505	COG1289	transmembrane transporter activity
LNQ40_011515	COG2925	Exonuclease
LNQ40_011520	COG0531	amino acid
LNQ40_011525	COG4771	TonB-dependent receptor
LNQ40_011535	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ40_011545	COG0833	amino acid
LNQ40_011550	COG0583	DNA-binding transcription factor activity
LNQ40_011560	COG2855	membrane
LNQ40_011565	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LNQ40_011570	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LNQ40_011570	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LNQ40_011570	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LNQ40_011575	COG1105	Belongs to the carbohydrate kinase PfkB family
LNQ40_011590	COG3005	denitrification pathway
LNQ40_011595	COG0243	molybdopterin cofactor binding
LNQ40_011615	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LNQ40_011625	COG0246	Mannitol dehydrogenase
LNQ40_011635	COG0523	cobalamin synthesis protein
LNQ40_011640	COG0671	phosphoesterase, PA-phosphatase related
LNQ40_011645	COG0791	NLP P60 protein
LNQ40_011650	COG2200	EAL domain
LNQ40_011655	COG4166	transmembrane transport
LNQ40_011660	COG4174	ABC transporter (Permease)
LNQ40_011665	COG4239	(ABC) transporter, permease
LNQ40_011670	COG4172	Belongs to the ABC transporter superfamily
LNQ40_011680	COG2814	Major facilitator Superfamily
LNQ40_011685	COG1187	pseudouridine synthase activity
LNQ40_011690	COG1061	Type III restriction enzyme res subunit
LNQ40_011705	COG3082	Protein of unknown function (DUF1414)
LNQ40_011710	COG3083	sulfuric ester hydrolase activity
LNQ40_011735	COG3778	Protein conserved in bacteria
LNQ40_011740	COG3299	homolog of phage Mu protein gp47
LNQ40_011785	COG4386	tail sheath protein
LNQ40_011835	COG1802	Transcriptional regulator
LNQ40_011835	COG4626	Terminase
LNQ40_011885	COG1403	HNH endonuclease
LNQ40_011905	COG4725	Belongs to the MT-A70-like family
LNQ40_011910	COG4626	Terminase
LNQ40_011910	COG1802	Transcriptional regulator
LNQ40_011955	COG5532	Uncharacterized conserved protein (DUF2303)
LNQ40_011960	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LNQ40_011980	COG2267	carboxylic ester hydrolase activity
LNQ40_011980	COG2226	methyltransferase
LNQ40_012025	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LNQ40_012030	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNQ40_012050	COG2223	nitrite transmembrane transporter activity
LNQ40_012055	COG2198	Histidine kinase
LNQ40_012055	COG0642	Histidine kinase
LNQ40_012065	COG0784	Response regulator, receiver
LNQ40_012065	COG2205	protein histidine kinase activity
LNQ40_012075	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LNQ40_012080	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LNQ40_012090	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LNQ40_012100	COG4574	serine-type endopeptidase inhibitor activity
LNQ40_012110	COG2246	polysaccharide biosynthetic process
LNQ40_012125	COG0814	amino acid
LNQ40_012150	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LNQ40_012155	COG0596	Alpha beta hydrolase
LNQ40_012160	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LNQ40_012165	COG1169	isochorismate synthase
LNQ40_012170	COG4575	ribosome binding
LNQ40_012185	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ40_012190	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LNQ40_012200	COG0839	Belongs to the complex I subunit 6 family
LNQ40_012205	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ40_012210	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LNQ40_012215	COG1034	ATP synthesis coupled electron transport
LNQ40_012235	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ40_012240	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNQ40_012245	COG0583	DNA-binding transcription factor activity
LNQ40_012250	COG0436	Aminotransferase
LNQ40_012255	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LNQ40_012260	COG0490	domain, Protein
LNQ40_012260	COG0471	metal ion transport
LNQ40_012270	COG3013	Belongs to the UPF0304 family
LNQ40_012275	COG3092	negative regulation of chromosome organization
LNQ40_012285	COG0857	belongs to the CobB CobQ family
LNQ40_012285	COG0280	phosphate acetyltransferase
LNQ40_012290	COG1609	Transcriptional regulator
LNQ40_012305	COG3037	sugar-specific permease SgaT UlaA
LNQ40_012310	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
LNQ40_012315	COG0622	Phosphoesterase
LNQ40_012325	COG0625	glutathione transferase activity
LNQ40_012330	COG1090	epimerase
LNQ40_012340	COG4160	amino acid transport
LNQ40_012345	COG4215	(ABC) transporter
LNQ40_012360	COG0163	prenyltransferase activity
LNQ40_012365	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LNQ40_012370	COG1286	toxin biosynthetic process
LNQ40_012375	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
LNQ40_012380	COG0285	dihydrofolate synthase activity
LNQ40_012390	COG0586	Pfam SNARE associated Golgi protein
LNQ40_012400	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LNQ40_012425	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LNQ40_012430	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LNQ40_012460	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LNQ40_012475	COG3101	peptidyl-lysine hydroxylation
LNQ40_012480	COG0730	response to heat
LNQ40_012485	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
LNQ40_012495	COG2890	protein-(glutamine-N5) methyltransferase activity
LNQ40_012500	COG2840	Smr protein MutS2
LNQ40_012505	COG2062	phosphohistidine phosphatase, SixA
LNQ40_012510	COG1024	Enoyl-CoA hydratase
LNQ40_012510	COG1250	3-hydroxyacyl-CoA dehydrogenase
LNQ40_012515	COG0183	Belongs to the thiolase family
LNQ40_012520	COG3691	Protein conserved in bacteria
LNQ40_012535	COG4235	cytochrome complex assembly
LNQ40_012535	COG3088	subunit of a heme lyase
LNQ40_012540	COG4235	cytochrome complex assembly
LNQ40_012540	COG3088	subunit of a heme lyase
LNQ40_012545	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LNQ40_012550	COG1138	Cytochrome C-type biogenesis protein
LNQ40_012555	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LNQ40_012560	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LNQ40_012565	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LNQ40_012570	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LNQ40_012590	COG2824	Alkylphosphonate utilization operon protein PhnA
LNQ40_012595	COG2951	lytic endotransglycosylase activity
LNQ40_012600	COG1598	PFAM Uncharacterised protein family UPF0150
LNQ40_012610	COG3038	cytochrome b561
LNQ40_012615	COG0436	Aminotransferase
LNQ40_012625	COG3275	phosphorelay sensor kinase activity
LNQ40_012635	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LNQ40_012705	COG4386	tail sheath protein
LNQ40_012730	COG4397	Mu-like prophage major head subunit gpT
LNQ40_012755	COG4383	Mu-like prophage protein gp29
LNQ40_012810	COG4382	Mu-like prophage protein Gp16
LNQ40_012875	COG3423	Transcriptional regulator
LNQ40_012890	COG2223	nitrite transmembrane transporter activity
LNQ40_012895	COG0837	glucose binding
LNQ40_012915	COG1914	H( )-stimulated, divalent metal cation uptake system
LNQ40_012920	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LNQ40_012995	COG3530	Putative quorum-sensing-regulated virulence factor
LNQ40_013000	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LNQ40_013010	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
LNQ40_013020	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ40_013035	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LNQ40_013045	COG4208	sulfate ABC transporter
LNQ40_013050	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LNQ40_013055	COG4150	thiosulfate binding
LNQ40_013065	COG1737	Transcriptional regulator
LNQ40_013070	COG2731	YhcH YjgK YiaL family protein
LNQ40_013085	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LNQ40_013090	COG2837	iron assimilation
LNQ40_013100	COG3111	PFAM Bacterial OB fold (BOF) protein
LNQ40_013160	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LNQ40_013185	COG1671	Belongs to the UPF0178 family
LNQ40_013190	COG0281	malic enzyme
LNQ40_013190	COG0280	phosphate acetyltransferase
LNQ40_013195	COG0494	nUDIX hydrolase
LNQ40_013200	COG3005	denitrification pathway
LNQ40_013205	COG3043	anaerobic respiration
LNQ40_013210	COG0243	molybdopterin cofactor binding
LNQ40_013215	COG3062	negative regulation of establishment of protein localization
LNQ40_013220	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ40_013220	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ40_013225	COG2197	response regulator
LNQ40_013235	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LNQ40_013245	COG1605	Chorismate mutase
LNQ40_013250	COG1393	Belongs to the ArsC family
LNQ40_013255	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LNQ40_013260	COG1876	peptidase activity
LNQ40_013270	COG0400	carboxylic ester hydrolase activity
LNQ40_013290	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LNQ40_013295	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LNQ40_013300	COG2716	regulation of RNA biosynthetic process
LNQ40_013305	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LNQ40_013310	COG0628	permease
LNQ40_013315	COG4783	chaperone-mediated protein folding
LNQ40_013320	COG1393	Belongs to the ArsC family
LNQ40_013325	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LNQ40_013330	COG2233	PERMEase
LNQ40_013335	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LNQ40_013340	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LNQ40_013345	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LNQ40_013350	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNQ40_013360	COG0581	inorganic phosphate transmembrane transporter activity
LNQ40_013365	COG0573	inorganic phosphate transmembrane transporter activity
LNQ40_013370	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LNQ40_013385	COG2239	Acts as a magnesium transporter
LNQ40_013390	COG0443	Heat shock 70 kDa protein
LNQ40_013400	COG3121	Chaperone
LNQ40_013425	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LNQ40_013435	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LNQ40_013440	COG0477	Major facilitator Superfamily
LNQ40_013445	COG2205	protein histidine kinase activity
LNQ40_013450	COG0745	RESPONSE REGULATOR receiver
LNQ40_013455	COG3422	double-strand break repair
LNQ40_013460	COG0826	peptidase U32
LNQ40_013465	COG1597	lipid kinase activity
LNQ40_013480	COG0351	phosphomethylpyrimidine kinase
LNQ40_013490	COG0519	Catalyzes the synthesis of GMP from XMP
LNQ40_013490	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LNQ40_013495	COG0517	IMP dehydrogenase activity
LNQ40_013495	COG0516	GMP reductase activity
LNQ40_013500	COG1570	exodeoxyribonuclease VII activity
LNQ40_013505	COG1645	bacterial-type flagellum-dependent swarming motility
LNQ40_013515	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LNQ40_013520	COG2976	Protein conserved in bacteria
LNQ40_013525	COG0124	histidyl-tRNA synthetase
LNQ40_013545	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LNQ40_013560	COG4953	penicillin-binding protein 1C
LNQ40_013565	COG2373	Large extracellular alpha-helical protein
LNQ40_013580	COG2975	iron-sulfur cluster assembly
LNQ40_013585	COG0633	Ferredoxin
LNQ40_013590	COG0443	Heat shock 70 kDa protein
LNQ40_013605	COG0822	iron-sulfur transferase activity
LNQ40_013615	COG1959	2 iron, 2 sulfur cluster binding
LNQ40_013620	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
LNQ40_013630	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
LNQ40_013635	COG3683	transport system, periplasmic component
LNQ40_013640	COG3711	transcriptional antiterminator
LNQ40_013645	COG2814	Major facilitator Superfamily
LNQ40_013655	COG1017	nitric oxide dioxygenase activity
LNQ40_013655	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LNQ40_013660	COG2188	Transcriptional regulator
LNQ40_013670	COG3457	Alanine racemase
LNQ40_013675	COG1735	metal-dependent hydrolase with the TIM-barrel fold
LNQ40_013690	COG0347	Belongs to the P(II) protein family
LNQ40_013695	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNQ40_013695	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LNQ40_013700	COG2204	response regulator
LNQ40_013705	COG3170	Tfp pilus assembly protein FimV
LNQ40_013710	COG2205	protein histidine kinase activity
LNQ40_013725	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LNQ40_013735	COG0560	Phosphoserine phosphatase
LNQ40_013740	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ40_013740	COG1263	PTS System
LNQ40_013750	COG1737	Transcriptional regulator
LNQ40_013755	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNQ40_013765	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LNQ40_013775	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LNQ40_013790	COG0481	GTPase activity
LNQ40_013795	COG3086	response to oxidative stress
LNQ40_013805	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
LNQ40_013815	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LNQ40_013825	COG0513	Belongs to the DEAD box helicase family
LNQ40_013840	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
LNQ40_013850	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LNQ40_013855	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LNQ40_013860	COG0497	DNA recombination
LNQ40_013865	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LNQ40_013875	COG2867	negative regulation of translational initiation
LNQ40_013880	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LNQ40_013890	COG0582	viral genome integration into host DNA
LNQ40_013895	COG0515	serine threonine protein kinase
LNQ40_013895	COG2815	serine threonine protein kinase
LNQ40_013900	COG0515	serine threonine protein kinase
LNQ40_013900	COG2815	serine threonine protein kinase
LNQ40_013925	COG3311	Transcriptional regulator
LNQ40_013965	COG2003	Belongs to the UPF0758 family
LNQ40_013980	COG1204	response to ionizing radiation
LNQ40_014000	COG1069	ribulokinase activity
LNQ40_014010	COG1172	Belongs to the binding-protein-dependent transport system permease family
LNQ40_014015	COG1129	ABC transporter
LNQ40_014035	COG1620	l-lactate permease
LNQ40_014040	COG1304	FMN binding
LNQ40_014045	COG0579	oxidoreductase
LNQ40_014050	COG1278	Cold shock
LNQ40_014080	COG1780	Probably involved in ribonucleotide reductase function
LNQ40_014085	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LNQ40_014095	COG4175	Glycine betaine
LNQ40_014100	COG4176	ABC-type proline glycine betaine transport system permease component
LNQ40_014105	COG2113	Glycine betaine
LNQ40_014115	COG2814	Major facilitator Superfamily
LNQ40_014120	COG1846	Transcriptional regulator
LNQ40_014130	COG1566	PFAM secretion protein HlyD family protein
LNQ40_014135	COG2814	Major facilitator Superfamily
LNQ40_014140	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LNQ40_014145	COG3118	belongs to the thioredoxin family
LNQ40_014150	COG3148	PFAM DTW domain containing protein
LNQ40_014155	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNQ40_014155	COG1042	CoA-binding domain protein
LNQ40_014155	COG0045	succinate-CoA ligase (ADP-forming) activity
LNQ40_014160	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LNQ40_014165	COG5544	Lipoprotein
LNQ40_014190	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LNQ40_014200	COG2011	ABC-type metal ion transport system permease component
LNQ40_014205	COG1464	Belongs to the NlpA lipoprotein family
LNQ40_014215	COG1720	tRNA m6t6A37 methyltransferase activity
LNQ40_014220	COG0442	prolyl-tRNA aminoacylation
LNQ40_014225	COG3015	lipoprotein NlpE involved in copper resistance
LNQ40_014235	COG4681	YaeQ
LNQ40_014245	COG4568	rho-dependent transcription termination
LNQ40_014260	COG0346	lactoylglutathione lyase activity
LNQ40_014275	COG0825	malonyl-CoA metabolic process
LNQ40_014280	COG0587	DNA-directed DNA polymerase activity
LNQ40_014285	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LNQ40_014305	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LNQ40_014310	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
LNQ40_014320	COG0750	zinc metalloprotease
LNQ40_014325	COG0575	Belongs to the CDS family
LNQ40_014345	COG0528	UMP kinase activity
LNQ40_014350	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LNQ40_014370	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LNQ40_014375	COG2171	N-acyltransferase activity
LNQ40_014390	COG0564	pseudouridine synthase activity
LNQ40_014395	COG3098	single-species biofilm formation
LNQ40_014410	COG1611	Belongs to the LOG family
LNQ40_014420	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
LNQ40_014425	COG2363	Small membrane protein
LNQ40_014430	COG0583	DNA-binding transcription factor activity
LNQ40_014440	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LNQ40_014445	COG2166	iron-sulfur cluster assembly
LNQ40_014450	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LNQ40_014455	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
LNQ40_014475	COG0860	N-Acetylmuramoyl-L-alanine amidase
LNQ40_014480	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LNQ40_014480	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LNQ40_014485	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LNQ40_014490	COG1074	ATP-dependent DNA helicase activity
LNQ40_014495	COG1025	Belongs to the peptidase M16 family
LNQ40_014500	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LNQ40_014505	COG4967	type IV pilus modification protein PilV
LNQ40_014530	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LNQ40_014535	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
LNQ40_014545	COG3066	DNA modification
LNQ40_014550	COG0861	Integral membrane protein TerC family
LNQ40_014555	COG0667	Aldo Keto reductase
LNQ40_014560	COG0477	Major facilitator Superfamily
LNQ40_014565	COG0318	PFAM AMP-dependent synthetase and ligase
LNQ40_014565	COG0204	Acyl-transferase
LNQ40_014570	COG1609	Transcriptional regulator
LNQ40_014580	COG0583	DNA-binding transcription factor activity
LNQ40_014585	COG0583	DNA-binding transcription factor activity
LNQ40_014640	COG2165	general secretion pathway protein
LNQ40_014650	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LNQ40_014680	COG1127	ABC transporter
LNQ40_014685	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LNQ40_014695	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LNQ40_014705	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LNQ40_014710	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LNQ40_014715	COG4974	Belongs to the 'phage' integrase family
LNQ40_014720	COG0716	FMN binding
LNQ40_014730	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LNQ40_014740	COG1272	protein, Hemolysin III
LNQ40_014760	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LNQ40_014765	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LNQ40_014770	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LNQ40_014775	COG0006	proline dipeptidase activity
LNQ40_014785	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LNQ40_014795	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LNQ40_014800	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LNQ40_014805	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LNQ40_014820	COG1279	arginine transmembrane transporter activity
LNQ40_014830	COG0191	fructose-bisphosphate aldolase activity
LNQ40_014835	COG0126	phosphoglycerate kinase activity
LNQ40_014840	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LNQ40_014845	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LNQ40_014855	COG1166	arginine decarboxylase activity
LNQ40_014860	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LNQ40_014875	COG0640	Transcriptional regulator
LNQ40_014880	COG3091	SprT-like family
LNQ40_014885	COG2356	endonuclease I
LNQ40_014890	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LNQ40_014895	COG0189	ligase activity
LNQ40_014900	COG1678	Uncharacterized ACR, COG1678
LNQ40_014905	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LNQ40_014910	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNQ40_014920	COG2805	Type II/IV secretion system protein
LNQ40_014925	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LNQ40_014930	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LNQ40_014935	COG0762	integral membrane protein
LNQ40_014940	COG1872	DUF167
LNQ40_014945	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LNQ40_014950	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LNQ40_014965	COG3171	Protein conserved in bacteria
LNQ40_014975	COG1194	a g-specific adenine glycosylase
LNQ40_014980	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LNQ40_014985	COG0741	lytic transglycosylase activity
LNQ40_015020	COG1105	Belongs to the carbohydrate kinase PfkB family
LNQ40_015030	COG1882	Formate acetyltransferase
LNQ40_015035	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LNQ40_015040	COG0814	amino acid
LNQ40_015055	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ40_015060	COG1535	isochorismatase
LNQ40_015060	COG3433	isochorismatase activity
LNQ40_015065	COG1021	2,3-dihydroxybenzoate-AMP ligase
LNQ40_015070	COG1169	isochorismate synthase
LNQ40_015075	COG4592	Periplasmic binding protein
LNQ40_015085	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ40_015090	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNQ40_015095	COG1120	ATPase activity
LNQ40_015105	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LNQ40_015110	COG3251	PFAM MbtH domain protein
LNQ40_015120	COG4774	siderophore transport
LNQ40_015125	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LNQ40_015150	COG4964	Belongs to the GSP D family
LNQ40_015200	COG0848	biopolymer transport protein
LNQ40_015205	COG0811	peptide transport
LNQ40_015210	COG0626	cystathionine gamma-synthase activity
LNQ40_015215	COG0586	Pfam SNARE associated Golgi protein
LNQ40_015220	COG2207	Transcriptional regulator
LNQ40_015225	COG1979	alcohol dehydrogenase
LNQ40_015230	COG0656	L-ascorbic acid biosynthetic process
LNQ40_015240	COG2132	Multicopper oxidase
LNQ40_015250	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LNQ40_015255	COG2249	NAD(P)H dehydrogenase (quinone) activity
LNQ40_015260	COG0583	DNA-binding transcription factor activity
LNQ40_015265	COG0187	DNA topoisomerase II activity
LNQ40_015270	COG3150	esterase
LNQ40_015275	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LNQ40_015280	COG3151	Protein conserved in bacteria
LNQ40_015285	COG0494	nUDIX hydrolase
LNQ40_015290	COG1538	Outer membrane efflux protein
LNQ40_015295	COG5463	Belongs to the UPF0441 family
LNQ40_015300	COG0754	glutathionylspermidine amidase activity
LNQ40_015305	COG3384	dioxygenase
LNQ40_015310	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LNQ40_015320	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LNQ40_015320	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LNQ40_015325	COG3547	Transposase (IS116 IS110 IS902 family)
LNQ40_015335	COG3025	triphosphatase activity
LNQ40_015340	COG4991	sh3 domain protein
LNQ40_015345	COG0617	tRNA 3'-terminal CCA addition
LNQ40_015350	COG1968	undecaprenyl-diphosphatase activity
LNQ40_015355	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LNQ40_015360	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LNQ40_015365	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LNQ40_015370	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LNQ40_015375	COG0358	DNA primase activity
LNQ40_015405	COG1028	Short-chain dehydrogenase reductase Sdr
LNQ40_015435	COG0463	Glycosyl transferase, family 2
LNQ40_015485	COG2831	hemolysin activation secretion protein
LNQ40_015490	COG0446	pyridine nucleotide-disulphide oxidoreductase
LNQ40_015490	COG1902	pentaerythritol trinitrate reductase activity
LNQ40_015505	COG1451	nucleotide metabolic process
LNQ40_015510	COG0673	inositol 2-dehydrogenase activity
LNQ40_015515	COG0861	Integral membrane protein TerC family
LNQ40_015520	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LNQ40_015530	COG2721	sulfolactate sulfo-lyase activity
LNQ40_015545	COG2271	Major facilitator Superfamily
LNQ40_015560	COG0586	Pfam SNARE associated Golgi protein
LNQ40_015575	COG4575	ribosome binding
LNQ40_015580	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
LNQ40_015590	COG2259	Doxx family
LNQ40_015595	COG0583	DNA-binding transcription factor activity
LNQ40_015600	COG1741	Belongs to the pirin family
LNQ40_015615	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LNQ40_015630	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LNQ40_015635	COG2823	Periplasmic or secreted lipoprotein
LNQ40_015640	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LNQ40_015645	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
LNQ40_015650	COG5002	protein histidine kinase activity
LNQ40_015650	COG2198	Histidine kinase
LNQ40_015650	COG0784	Response regulator, receiver
LNQ40_015655	COG1242	4 iron, 4 sulfur cluster binding
LNQ40_015660	COG0070	glutamate synthase
LNQ40_015660	COG0067	glutamate synthase
LNQ40_015660	COG0069	glutamate synthase activity
LNQ40_015665	COG0493	'glutamate synthase
LNQ40_015675	COG2969	positive regulation of protein catabolic process
LNQ40_015680	COG0625	glutathione transferase activity
LNQ40_015685	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LNQ40_015690	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LNQ40_015695	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LNQ40_015700	COG3105	Protein conserved in bacteria
LNQ40_015705	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LNQ40_015715	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LNQ40_015720	COG5007	Belongs to the BolA IbaG family
LNQ40_015725	COG3113	response to antibiotic
LNQ40_015730	COG2854	intermembrane phospholipid transfer
LNQ40_015735	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LNQ40_015740	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LNQ40_015745	COG1127	ABC transporter
LNQ40_015750	COG0530	calcium, potassium:sodium antiporter activity
LNQ40_015755	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LNQ40_015755	COG0517	IMP dehydrogenase activity
LNQ40_015760	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LNQ40_015765	COG3117	lipopolysaccharide transmembrane transporter activity
LNQ40_015770	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LNQ40_015775	COG1137	ATPase activity
LNQ40_015780	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LNQ40_015800	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNQ40_015805	COG0540	Belongs to the ATCase OTCase family
LNQ40_015810	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LNQ40_015820	COG0366	Alpha amylase catalytic
LNQ40_015825	COG1263	PTS System
LNQ40_015825	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LNQ40_015835	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LNQ40_015845	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LNQ40_015850	COG3783	Cytochrome b(562)
LNQ40_015855	COG0312	modulator of DNA gyrase
LNQ40_015860	COG3028	Belongs to the UPF0307 family
LNQ40_015865	COG2732	(Barnase) inhibitor
LNQ40_015870	COG4290	ribonuclease
LNQ40_015880	COG1289	transmembrane transporter activity
LNQ40_015885	COG1566	PFAM secretion protein HlyD family protein
LNQ40_015895	COG0583	DNA-binding transcription factor activity
LNQ40_015900	COG0312	modulator of DNA gyrase
LNQ40_015905	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNQ40_015910	COG3164	Protein of unknown function
LNQ40_015920	COG0424	maF-like protein
LNQ40_015925	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LNQ40_015930	COG1792	Involved in formation and maintenance of cell shape
LNQ40_015935	COG1077	Cell shape determining protein MreB Mrl
LNQ40_015940	COG2200	EAL domain
LNQ40_015940	COG2199	diguanylate cyclase activity
LNQ40_015945	COG0604	alcohol dehydrogenase
LNQ40_015950	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LNQ40_015955	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
LNQ40_015965	COG0511	ligase activity, forming carbon-carbon bonds
LNQ40_015970	COG0439	Biotin carboxylase
LNQ40_015975	COG3924	membrane
LNQ40_015980	COG4145	pantothenate transmembrane transporter activity
LNQ40_015985	COG2264	protein methyltransferase activity
LNQ40_015990	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LNQ40_015995	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LNQ40_016005	COG1560	Kdo2-lipid A biosynthetic process
LNQ40_016015	COG1346	cytolysis
LNQ40_016020	COG1380	Effector of murein hydrolase LrgA
LNQ40_016025	COG0583	DNA-binding transcription factor activity
LNQ40_016030	COG0025	NhaP-type Na H and K H
LNQ40_016035	COG2252	PERMEase
LNQ40_016050	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LNQ40_016055	COG2315	Protein conserved in bacteria
LNQ40_016060	COG1448	Aminotransferase
LNQ40_016075	COG0604	alcohol dehydrogenase
LNQ40_016085	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LNQ40_016090	COG0735	belongs to the Fur family
LNQ40_016095	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LNQ40_016100	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LNQ40_016105	COG2937	Belongs to the GPAT DAPAT family
LNQ40_016125	COG4580	involved in the transport of maltose and maltodextrins
LNQ40_016140	COG2182	Extracellular solute-binding protein
LNQ40_016145	COG1175	transmembrane transport
LNQ40_016150	COG3833	ABC-type maltose transport systems, permease component
LNQ40_016155	COG3223	Belongs to the PsiE family
LNQ40_016165	COG0527	aspartate kinase activity
LNQ40_016190	COG1222	aaa ATPase
LNQ40_016270	COG0583	DNA-binding transcription factor activity
LNQ40_016285	COG0646	methionine synthase
LNQ40_016285	COG1410	methionine synthase
LNQ40_016305	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LNQ40_016345	COG0138	bifunctional purine biosynthesis protein purh
LNQ40_016350	COG0151	Belongs to the GarS family
LNQ40_016370	COG1515	deoxyribonuclease V activity
LNQ40_016375	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LNQ40_016380	COG2816	NAD+ diphosphatase activity
LNQ40_016385	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
LNQ40_016400	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LNQ40_016405	COG2104	thiamine diphosphate biosynthetic process
LNQ40_016410	COG2022	thiamine diphosphate biosynthetic process
LNQ40_016420	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LNQ40_016425	COG0085	RNA polymerase activity
LNQ40_016430	COG0222	ribosome binding
LNQ40_016435	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LNQ40_016445	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LNQ40_016450	COG0250	Participates in transcription elongation, termination and antitermination
LNQ40_016495	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LNQ40_016520	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
LNQ40_016525	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LNQ40_016530	COG1739	Uncharacterized protein family UPF0029
LNQ40_016540	COG1250	3-hydroxyacyl-CoA dehydrogenase
LNQ40_016540	COG1024	Enoyl-CoA hydratase
LNQ40_016550	COG0543	2 iron, 2 sulfur cluster binding
LNQ40_016565	COG0250	Participates in transcription elongation, termination and antitermination
LNQ40_016580	COG0805	protein transport
LNQ40_016585	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LNQ40_016590	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LNQ40_016595	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LNQ40_016600	COG3165	ubiquinone biosynthetic process from chorismate
LNQ40_016605	COG2226	methyltransferase
LNQ40_016610	COG1322	Protein conserved in bacteria
LNQ40_016615	COG0586	Pfam SNARE associated Golgi protein
LNQ40_016620	COG1966	Carbon starvation protein
LNQ40_016635	COG0412	Dienelactone hydrolase
LNQ40_016640	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LNQ40_016645	COG0583	DNA-binding transcription factor activity
LNQ40_016650	COG0697	spore germination
LNQ40_016660	COG0584	glycerophosphoryl diester phosphodiesterase
LNQ40_016670	COG0395	ABC-type sugar transport system, permease component
LNQ40_016675	COG1175	transmembrane transport
LNQ40_016680	COG1653	transport
LNQ40_016715	COG0410	ABC transporter
LNQ40_016725	COG4177	L-phenylalanine transmembrane transporter activity
LNQ40_016745	COG1929	Belongs to the glycerate kinase type-1 family
LNQ40_016750	COG2610	gluconate transmembrane transporter activity
LNQ40_016755	COG3835	regulator
LNQ40_016765	COG2177	Part of the ABC transporter FtsEX involved in
LNQ40_016770	COG2884	Cell division ATP-binding protein ftsE
LNQ40_016775	COG0552	protein localization to endoplasmic reticulum
LNQ40_016775	COG0552	protein localization to endoplasmic reticulum
LNQ40_016780	COG0742	ribosomal rna small subunit methyltransferase
LNQ40_016785	COG3776	membrane
LNQ40_016800	COG3714	YhhN family
LNQ40_016815	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LNQ40_016825	COG0247	lactate metabolic process
LNQ40_016835	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LNQ40_016845	COG2271	Major facilitator Superfamily
LNQ40_016850	COG0584	glycerophosphoryl diester phosphodiesterase
LNQ40_016855	COG0561	phosphatase activity
LNQ40_016860	COG2267	carboxylic ester hydrolase activity
LNQ40_016865	COG1280	lysine exporter protein (LysE YggA)
LNQ40_016870	COG0514	ATP-dependent DNA helicase (RecQ)
LNQ40_016875	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
LNQ40_016880	COG2050	protein possibly involved in aromatic compounds catabolism
LNQ40_016900	COG5564	TIM-barrel signal transduction protein
LNQ40_016905	COG5441	Belongs to the UPF0261 family
LNQ40_016915	COG0210	DNA helicase
LNQ40_016920	COG1011	Hydrolase
LNQ40_016925	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LNQ40_016930	COG3159	Protein conserved in bacteria
LNQ40_016935	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LNQ40_016940	COG5567	small periplasmic lipoprotein
LNQ40_016950	COG3072	Adenylate cyclase
LNQ40_016955	COG0181	hydroxymethylbilane synthase activity
LNQ40_016960	COG1587	Uroporphyrinogen-III synthase
LNQ40_016965	COG2959	enzyme of heme biosynthesis
LNQ40_016970	COG3071	HemY protein
LNQ40_017015	COG2244	polysaccharide biosynthetic process
LNQ40_017020	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LNQ40_017025	COG0456	acetyltransferase
LNQ40_017030	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LNQ40_017035	COG1088	dTDP-glucose 4,6-dehydratase activity
LNQ40_017040	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LNQ40_017045	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LNQ40_017050	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
LNQ40_017055	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LNQ40_017060	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LNQ40_017065	COG3118	belongs to the thioredoxin family
LNQ40_017075	COG0248	Ppx GppA phosphatase
LNQ40_017085	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LNQ40_017100	COG3397	chitin binding
LNQ40_017110	COG0129	dihydroxy-acid dehydratase activity
LNQ40_017120	COG3978	acetolactate synthase activity
LNQ40_017140	COG3085	chromosome segregation
LNQ40_017145	COG0583	DNA-binding transcription factor activity
LNQ40_017215	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNQ40_017225	COG0678	peroxiredoxin activity
LNQ40_017225	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LNQ40_017230	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNQ40_017265	COG1629	transport
LNQ40_017270	COG0165	Argininosuccinate lyase
LNQ40_017275	COG0137	argininosuccinate synthase activity
LNQ40_017280	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LNQ40_017325	COG0460	homoserine dehydrogenase
LNQ40_017325	COG0527	aspartate kinase activity
LNQ40_017330	COG0626	cystathionine gamma-synthase activity
LNQ40_017335	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
LNQ40_017345	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LNQ40_017350	COG1609	Transcriptional regulator
LNQ40_017355	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LNQ40_017360	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LNQ40_017365	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LNQ40_017370	COG1575	Belongs to the MenA family. Type 1 subfamily
LNQ40_017375	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LNQ40_017380	COG3074	FtsZ-dependent cytokinesis
LNQ40_017385	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LNQ40_017390	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LNQ40_017395	COG1494	fructose-1,6-bisphosphatase
LNQ40_017400	COG2814	Major facilitator Superfamily
LNQ40_017410	COG3152	Membrane
LNQ40_017425	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LNQ40_017435	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LNQ40_017440	COG3678	ATP-independent chaperone mediated protein folding
LNQ40_017445	COG0745	RESPONSE REGULATOR receiver
LNQ40_017450	COG2205	protein histidine kinase activity
LNQ40_017455	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LNQ40_017460	COG1045	serine acetyltransferase
LNQ40_017465	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LNQ40_017470	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LNQ40_017475	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LNQ40_017480	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LNQ40_017485	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LNQ40_017490	COG4942	peptidase
LNQ40_017495	COG2861	carbohydrate metabolic process
LNQ40_017510	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LNQ40_017515	COG0859	PFAM glycosyl transferase family 9
LNQ40_017520	COG0859	PFAM glycosyl transferase family 9
LNQ40_017525	COG1519	Transferase
LNQ40_017545	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LNQ40_017550	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LNQ40_017555	COG2003	Belongs to the UPF0758 family
LNQ40_017560	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LNQ40_017565	COG0756	dUTP diphosphatase activity
LNQ40_017570	COG1309	transcriptional regulator
LNQ40_017575	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LNQ40_017580	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LNQ40_017585	COG1561	YicC-like family, N-terminal region
LNQ40_017600	COG5001	Diguanylate cyclase
LNQ40_017605	COG1024	Enoyl-CoA hydratase
LNQ40_017610	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LNQ40_017625	COG2860	membrane
LNQ40_017630	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LNQ40_017640	COG1758	RNA polymerase activity
LNQ40_017645	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LNQ40_017650	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LNQ40_017655	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LNQ40_017660	COG0786	glutamate:sodium symporter activity
LNQ40_017665	COG2233	PERMEase
LNQ40_017670	COG2982	Protein involved in outer membrane biogenesis
LNQ40_017675	COG0456	acetyltransferase
LNQ40_017690	COG1011	Hydrolase
LNQ40_017705	COG3852	Histidine kinase
LNQ40_017715	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LNQ40_017725	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LNQ40_017730	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNQ40_017730	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNQ40_017735	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LNQ40_017740	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LNQ40_017745	COG3084	Protein conserved in bacteria
LNQ40_017755	COG1763	Mo-molybdopterin cofactor biosynthetic process
LNQ40_017780	COG2186	Transcriptional regulator
LNQ40_017785	COG1609	Transcriptional regulator
LNQ40_017790	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LNQ40_017800	COG1172	Belongs to the binding-protein-dependent transport system permease family
LNQ40_017805	COG1129	ABC transporter
LNQ40_017810	COG1869	D-ribose catabolic process
LNQ40_017815	COG3158	transport of potassium into the cell
LNQ40_017820	COG0714	Associated with various cellular activities
LNQ40_017825	COG2425	protein containing a von Willebrand factor type A (vWA) domain
LNQ40_017835	COG2502	aspartate--ammonia ligase
LNQ40_017840	COG1522	sequence-specific DNA binding
LNQ40_017845	COG0716	FMN binding
LNQ40_017850	COG0445	tRNA wobble uridine modification
LNQ40_017855	COG0357	Ribosomal RNA small subunit methyltransferase G
LNQ40_017860	COG3312	ion transport
LNQ40_017865	COG0356	it plays a direct role in the translocation of protons across the membrane
LNQ40_017875	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LNQ40_017885	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LNQ40_017890	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LNQ40_017900	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LNQ40_017915	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LNQ40_017920	COG0573	inorganic phosphate transmembrane transporter activity
LNQ40_017925	COG0581	inorganic phosphate transmembrane transporter activity
LNQ40_017935	COG0704	Plays a role in the regulation of phosphate uptake
LNQ40_017940	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNQ40_017945	COG0765	amino acid transport
LNQ40_017950	COG0765	amino acid transport
LNQ40_017955	COG2252	PERMEase
LNQ40_017960	COG0840	transmembrane signaling receptor activity
LNQ40_017970	COG3121	Chaperone
LNQ40_017985	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LNQ40_017990	COG0706	membrane insertase activity
LNQ40_018000	COG0594	ribonuclease P activity
LNQ40_018005	COG0230	Belongs to the bacterial ribosomal protein bL34 family