locus-tag class description ND439_00005 PF00308 Bacterial dnaA protein ND439_00005 PF08299 Bacterial dnaA protein helix-turn-helix ND439_00005 PF11638 DnaA N-terminal domain ND439_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND439_00010 PF02767 DNA polymerase III beta subunit, central domain ND439_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND439_00015 PF02463 RecF/RecN/SMC N terminal domain ND439_00020 PF01751 Toprim domain ND439_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND439_00020 PF00204 DNA gyrase B ND439_00020 PF18053 DNA gyrase B subunit insert domain ND439_00030 PF12566 Protein of unknown function (DUF3748) ND439_00030 PF07676 WD40-like Beta Propeller Repeat ND439_00035 PF07119 Protein of unknown function (DUF1375) ND439_00040 PF00011 Hsp20/alpha crystallin family ND439_00045 PF00011 Hsp20/alpha crystallin family ND439_00050 PF02080 TrkA-C domain ND439_00050 PF06826 Predicted Permease Membrane Region ND439_00055 PF00155 Aminotransferase class I and II ND439_00060 PF13488 Glycine zipper ND439_00060 PF00691 OmpA family ND439_00080 PF03352 Methyladenine glycosylase ND439_00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND439_00095 PF05746 DALR anticodon binding domain ND439_00095 PF02092 Glycyl-tRNA synthetase beta subunit ND439_00100 PF11254 Protein of unknown function (DUF3053) ND439_00135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND439_00135 PF02378 Phosphotransferase system, EIIC ND439_00135 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND439_00140 PF01232 Mannitol dehydrogenase Rossmann domain ND439_00140 PF08125 Mannitol dehydrogenase C-terminal domain ND439_00145 PF05068 Mannitol repressor ND439_00150 PF10928 Protein of unknown function (DUF2810) ND439_00155 PF03473 MOSC domain ND439_00155 PF03475 3-alpha domain ND439_00160 PF02203 Tar ligand binding domain homologue ND439_00160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND439_00160 PF00672 HAMP domain ND439_00165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND439_00165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND439_00170 PF02634 FdhD/NarQ family ND439_00180 PF09163 Formate dehydrogenase N, transmembrane ND439_00180 PF13247 4Fe-4S dicluster domain ND439_00185 PF01292 Prokaryotic cytochrome b561 ND439_00190 PF04216 Protein involved in formate dehydrogenase formation ND439_00195 PF12390 Selenocysteine synthase N terminal ND439_00195 PF03841 L-seryl-tRNA selenium transferase ND439_00200 PF09107 Elongation factor SelB, winged helix ND439_00200 PF09106 Elongation factor SelB, winged helix ND439_00200 PF03144 Elongation factor Tu domain 2 ND439_00200 PF00009 Elongation factor Tu GTP binding domain ND439_00205 PF01427 D-ala-D-ala dipeptidase ND439_00210 PF07690 Major Facilitator Superfamily ND439_00215 PF01757 Acyltransferase family ND439_00250 PF17392 Urocanase C-terminal domain ND439_00250 PF17391 Urocanase N-terminal domain ND439_00250 PF01175 Urocanase Rossmann-like domain ND439_00255 PF00221 Aromatic amino acid lyase ND439_00260 PF00324 Amino acid permease ND439_00270 PF12146 Serine aminopeptidase, S33 ND439_00275 PF08019 Phosphoethanolamine transferase EptA/EptB ND439_00275 PF00884 Sulfatase ND439_00280 PF00196 Bacterial regulatory proteins, luxR family ND439_00280 PF00072 Response regulator receiver domain ND439_00285 PF07730 Histidine kinase ND439_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_00285 PF05231 MASE1 ND439_00290 PF07690 Major Facilitator Superfamily ND439_00300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND439_00305 PF00528 Binding-protein-dependent transport system inner membrane component ND439_00310 PF12911 N-terminal TM domain of oligopeptide transport permease C ND439_00310 PF00528 Binding-protein-dependent transport system inner membrane component ND439_00315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND439_00315 PF00005 ABC transporter ND439_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND439_00320 PF00005 ABC transporter ND439_00325 PF11658 Cellulose biosynthesis protein BcsG ND439_00330 PF11120 Cellulose biosynthesis protein BcsF ND439_00335 PF10995 Cellulose biosynthesis GIL ND439_00345 PF06564 Cellulose biosynthesis protein BcsQ ND439_00350 PF07238 PilZ domain ND439_00350 PF00535 Glycosyl transferase family 2 ND439_00350 PF03552 Cellulose synthase ND439_00355 PF03170 Bacterial cellulose synthase subunit ND439_00360 PF01270 Glycosyl hydrolases family 8 ND439_00365 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND439_00370 PF00563 EAL domain ND439_00370 PF00990 Diguanylate cyclase, GGDEF domain ND439_00370 PF00672 HAMP domain ND439_00370 PF17154 Gammaproteobacterial periplasmic sensor domain ND439_00375 PF00375 Sodium:dicarboxylate symporter family ND439_00380 PF00675 Insulinase (Peptidase family M16) ND439_00380 PF05193 Peptidase M16 inactive domain ND439_00385 PF00294 pfkB family carbohydrate kinase ND439_00390 PF01361 Tautomerase enzyme ND439_00395 PF00563 EAL domain ND439_00400 PF02611 CDP-diacylglycerol pyrophosphatase ND439_00405 PF03631 Virulence factor BrkB ND439_00410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_00410 PF03466 LysR substrate binding domain ND439_00415 PF00375 Sodium:dicarboxylate symporter family ND439_00420 PF01053 Cys/Met metabolism PLP-dependent enzyme ND439_00430 PF02369 Bacterial Ig-like domain (group 1) ND439_00430 PF11924 Inverse autotransporter, beta-domain ND439_00430 PF07979 Intimin C-type lectin domain ND439_00430 PF09134 Invasin, domain 3 ND439_00435 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_00435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND439_00440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND439_00445 PF01432 Peptidase family M3 ND439_00450 PF04445 Putative SAM-dependent methyltransferase ND439_00455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND439_00455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND439_00460 PF00582 Universal stress protein family ND439_00465 PF10625 Universal stress protein B (UspB) ND439_00470 PF01384 Phosphate transporter family ND439_00480 PF01810 LysE type translocator ND439_00485 PF00583 Acetyltransferase (GNAT) family ND439_00490 PF17954 Quercetinase C-terminal cupin domain ND439_00490 PF02678 Pirin ND439_00495 PF00356 Bacterial regulatory proteins, lacI family ND439_00495 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND439_00500 PF02447 GntP family permease ND439_00505 PF01202 Shikimate kinase ND439_00510 PF01914 MarC family integral membrane protein ND439_00515 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND439_00515 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND439_00520 PF07694 5TMR of 5TMR-LYT ND439_00520 PF06580 Histidine kinase ND439_00525 PF00128 Alpha amylase, catalytic domain ND439_00525 PF02806 Alpha amylase, C-terminal all-beta domain ND439_00525 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND439_00530 PF00128 Alpha amylase, catalytic domain ND439_00530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND439_00530 PF18390 Glycogen debranching enzyme C-terminal domain ND439_00535 PF00483 Nucleotidyl transferase ND439_00540 PF00534 Glycosyl transferases group 1 ND439_00540 PF08323 Starch synthase catalytic domain ND439_00545 PF00343 Carbohydrate phosphorylase ND439_00550 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND439_00550 PF01266 FAD dependent oxidoreductase ND439_00555 PF08220 DeoR-like helix-turn-helix domain ND439_00555 PF00455 DeoR C terminal sensor domain ND439_00560 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND439_00560 PF01694 Rhomboid family ND439_00565 PF00581 Rhodanese-like domain ND439_00570 PF00196 Bacterial regulatory proteins, luxR family ND439_00570 PF17874 MalT-like TPR region ND439_00575 PF00343 Carbohydrate phosphorylase ND439_00580 PF02446 4-alpha-glucanotransferase ND439_00585 PF01521 Iron-sulphur cluster biosynthesis ND439_00585 PF01106 NifU-like domain ND439_00590 PF00156 Phosphoribosyl transferase domain ND439_00595 PF00561 alpha/beta hydrolase fold ND439_00605 PF09012 FeoC like transcriptional regulator ND439_00610 PF17910 FeoB cytosolic helical domain ND439_00610 PF02421 Ferrous iron transport protein B ND439_00610 PF07670 Nucleoside recognition ND439_00610 PF07664 Ferrous iron transport protein B C terminus ND439_00615 PF04023 FeoA domain ND439_00620 PF00575 S1 RNA binding domain ND439_00620 PF16921 Tex protein YqgF-like domain ND439_00620 PF17674 HHH domain ND439_00620 PF09371 Tex-like protein N-terminal domain ND439_00645 PF03449 Transcription elongation factor, N-terminal ND439_00645 PF01272 Transcription elongation factor, GreA/GreB, C-term ND439_00650 PF00486 Transcriptional regulatory protein, C terminal ND439_00650 PF00072 Response regulator receiver domain ND439_00655 PF00512 His Kinase A (phospho-acceptor) domain ND439_00655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_00655 PF00672 HAMP domain ND439_00660 PF01293 Phosphoenolpyruvate carboxykinase ND439_00665 PF01430 Hsp33 protein ND439_00670 PF01479 S4 domain ND439_00675 PF13419 Haloacid dehalogenase-like hydrolase ND439_00680 PF07095 Intracellular growth attenuator protein IgaA ND439_00685 PF00293 NUDIX domain ND439_00690 PF00912 Transglycosylase ND439_00690 PF00905 Penicillin binding protein transpeptidase domain ND439_00690 PF17092 Penicillin-binding protein OB-like domain ND439_00715 PF00263 Bacterial type II and III secretion system protein ND439_00715 PF03958 Bacterial type II/III secretion system short domain ND439_00720 PF01202 Shikimate kinase ND439_00725 PF01761 3-dehydroquinate synthase ND439_00730 PF05036 Sporulation related domain ND439_00735 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND439_00740 PF00834 Ribulose-phosphate 3 epimerase family ND439_00745 PF13419 Haloacid dehalogenase-like hydrolase ND439_00750 PF00579 tRNA synthetases class I (W and Y) ND439_00755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND439_00755 PF14824 Sirohaem biosynthesis protein central ND439_00755 PF10414 Sirohaem synthase dimerisation region ND439_00760 PF01226 Formate/nitrite transporter ND439_00765 PF13806 Rieske-like [2Fe-2S] domain ND439_00770 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND439_00770 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_00770 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND439_00770 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND439_00770 PF04324 BFD-like [2Fe-2S] binding domain ND439_00775 PF07969 Amidohydrolase family ND439_00780 PF07690 Major Facilitator Superfamily ND439_00795 PF00356 Bacterial regulatory proteins, lacI family ND439_00800 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND439_00800 PF02056 Family 4 glycosyl hydrolase ND439_00805 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND439_00810 PF00117 Glutamine amidotransferase class-I ND439_00815 PF00202 Aminotransferase class-III ND439_00820 PF12805 FUSC-like inner membrane protein yccS ND439_00825 PF00027 Cyclic nucleotide-binding domain ND439_00825 PF13545 Crp-like helix-turn-helix domain ND439_00830 PF02566 OsmC-like protein ND439_00850 PF00156 Phosphoribosyl transferase domain ND439_00855 PF00291 Pyridoxal-phosphate dependent enzyme ND439_00860 PF00485 Phosphoribulokinase / Uridine kinase family ND439_00865 PF06794 Uncharacterised protein family (UPF0270) ND439_00870 PF00561 alpha/beta hydrolase fold ND439_00875 PF01810 LysE type translocator ND439_00880 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND439_00885 PF00535 Glycosyl transferase family 2 ND439_00890 PF12848 ABC transporter ND439_00890 PF00005 ABC transporter ND439_00895 PF02525 Flavodoxin-like fold ND439_00900 PF02254 TrkA-N domain ND439_00900 PF00999 Sodium/hydrogen exchanger family ND439_00905 PF09526 Probable metal-binding protein (DUF2387) ND439_00910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND439_00915 PF04102 SlyX ND439_00920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND439_00920 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND439_00925 PF08348 YheO-like PAS domain ND439_00925 PF13309 HTH domain ND439_00930 PF02635 DsrE/DsrF-like family ND439_00935 PF02635 DsrE/DsrF-like family ND439_00940 PF04077 DsrH like protein ND439_00945 PF00164 Ribosomal protein S12/S23 ND439_00950 PF00177 Ribosomal protein S7p/S5e ND439_00955 PF14492 Elongation Factor G, domain II ND439_00955 PF00009 Elongation factor Tu GTP binding domain ND439_00955 PF03144 Elongation factor Tu domain 2 ND439_00955 PF03764 Elongation factor G, domain IV ND439_00955 PF00679 Elongation factor G C-terminus ND439_00960 PF00009 Elongation factor Tu GTP binding domain ND439_00960 PF03144 Elongation factor Tu domain 2 ND439_00960 PF03143 Elongation factor Tu C-terminal domain ND439_00965 PF04324 BFD-like [2Fe-2S] binding domain ND439_00970 PF00210 Ferritin-like domain ND439_00975 PF00338 Ribosomal protein S10p/S20e ND439_00980 PF00297 Ribosomal protein L3 ND439_00985 PF00573 Ribosomal protein L4/L1 family ND439_00990 PF00276 Ribosomal protein L23 ND439_00995 PF00181 Ribosomal Proteins L2, RNA binding domain ND439_00995 PF03947 Ribosomal Proteins L2, C-terminal domain ND439_01000 PF00203 Ribosomal protein S19 ND439_01005 PF00237 Ribosomal protein L22p/L17e ND439_01010 PF00189 Ribosomal protein S3, C-terminal domain ND439_01010 PF07650 KH domain ND439_01015 PF00252 Ribosomal protein L16p/L10e ND439_01020 PF00831 Ribosomal L29 protein ND439_01025 PF00366 Ribosomal protein S17 ND439_01030 PF00238 Ribosomal protein L14p/L23e ND439_01035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND439_01035 PF00467 KOW motif ND439_01040 PF00673 ribosomal L5P family C-terminus ND439_01040 PF00281 Ribosomal protein L5 ND439_01045 PF00253 Ribosomal protein S14p/S29e ND439_01050 PF00410 Ribosomal protein S8 ND439_01055 PF00347 Ribosomal protein L6 ND439_01060 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND439_01065 PF00333 Ribosomal protein S5, N-terminal domain ND439_01065 PF03719 Ribosomal protein S5, C-terminal domain ND439_01070 PF00327 Ribosomal protein L30p/L7e ND439_01075 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND439_01080 PF00344 SecY translocase ND439_01085 PF00444 Ribosomal protein L36 ND439_01090 PF00416 Ribosomal protein S13/S18 ND439_01095 PF00411 Ribosomal protein S11 ND439_01100 PF00163 Ribosomal protein S4/S9 N-terminal domain ND439_01100 PF01479 S4 domain ND439_01105 PF01000 RNA polymerase Rpb3/RpoA insert domain ND439_01105 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND439_01105 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND439_01110 PF01196 Ribosomal protein L17 ND439_01115 PF13411 MerR HTH family regulatory protein ND439_01120 PF03889 Alternative ribosome-rescue factor A ND439_01125 PF01741 Large-conductance mechanosensitive channel, MscL ND439_01130 PF02254 TrkA-N domain ND439_01130 PF02080 TrkA-C domain ND439_01135 PF01029 NusB family ND439_01135 PF01189 16S rRNA methyltransferase RsmB/F ND439_01140 PF00551 Formyl transferase ND439_01140 PF02911 Formyl transferase, C-terminal domain ND439_01145 PF01327 Polypeptide deformylase ND439_01150 PF17782 DprA winged helix domain ND439_01150 PF02481 DNA recombination-mediator protein A ND439_01155 PF04361 Protein of unknown function (DUF494) ND439_01160 PF01396 Topoisomerase DNA binding C4 zinc finger ND439_01165 PF01300 Telomere recombination ND439_01170 PF08501 Shikimate dehydrogenase substrate binding domain ND439_01170 PF01488 Shikimate / quinate 5-dehydrogenase ND439_01170 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND439_01175 PF00132 Bacterial transferase hexapeptide (six repeats) ND439_01200 PF00474 Sodium:solute symporter family ND439_01205 PF04341 Protein of unknown function, DUF485 ND439_01210 PF16177 Acetyl-coenzyme A synthetase N-terminus ND439_01210 PF13193 AMP-binding enzyme C-terminal domain ND439_01210 PF00501 AMP-binding enzyme ND439_01215 PF00375 Sodium:dicarboxylate symporter family ND439_01220 PF04143 Sulphur transport ND439_01225 PF01206 Sulfurtransferase TusA ND439_01230 PF02719 Polysaccharide biosynthesis protein ND439_01235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND439_01240 PF02350 UDP-N-acetylglucosamine 2-epimerase ND439_01245 PF03102 NeuB family ND439_01245 PF08666 SAF domain ND439_01255 PF00483 Nucleotidyl transferase ND439_01265 PF13472 GDSL-like Lipase/Acylhydrolase family ND439_01265 PF02348 Cytidylyltransferase ND439_01290 PF00795 Carbon-nitrogen hydrolase ND439_01290 PF02540 NAD synthase ND439_01295 PF00117 Glutamine amidotransferase class-I ND439_01300 PF00977 Histidine biosynthesis protein ND439_01305 PF02719 Polysaccharide biosynthesis protein ND439_01305 PF08485 Polysaccharide biosynthesis protein C-terminal ND439_01310 PF01370 NAD dependent epimerase/dehydratase family ND439_01315 PF02350 UDP-N-acetylglucosamine 2-epimerase ND439_01340 PF02683 Cytochrome C biogenesis protein transmembrane region ND439_01340 PF11412 Disulphide bond corrector protein DsbC ND439_01345 PF03091 CutA1 divalent ion tolerance protein ND439_01350 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND439_01355 PF10415 Fumarase C C-terminus ND439_01355 PF00206 Lyase ND439_01360 PF04186 FxsA cytoplasmic membrane protein ND439_01365 PF00166 Chaperonin 10 Kd subunit ND439_01370 PF00118 TCP-1/cpn60 chaperonin family ND439_01375 PF13698 Domain of unknown function (DUF4156) ND439_01380 PF04055 Radical SAM superfamily ND439_01385 PF01132 Elongation factor P (EF-P) OB domain ND439_01385 PF09285 Elongation factor P, C-terminal ND439_01385 PF08207 Elongation factor P (EF-P) KOW-like domain ND439_01390 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND439_01390 PF18416 N-acetylglucosamine binding protein domain 2 ND439_01395 PF00196 Bacterial regulatory proteins, luxR family ND439_01405 PF02753 Pili assembly chaperone PapD, C-terminal domain ND439_01405 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND439_01410 PF13953 PapC C-terminal domain ND439_01410 PF13954 PapC N-terminal domain ND439_01410 PF00577 Outer membrane usher protein ND439_01415 PF00419 Fimbrial protein ND439_01420 PF00893 Small Multidrug Resistance protein ND439_01425 PF08212 Lipocalin-like domain ND439_01430 PF02313 Fumarate reductase subunit D ND439_01435 PF02300 Fumarate reductase subunit C ND439_01440 PF13183 4Fe-4S dicluster domain ND439_01440 PF13085 2Fe-2S iron-sulfur cluster binding domain ND439_01445 PF00890 FAD binding domain ND439_01445 PF02910 Fumarate reductase flavoprotein C-term ND439_01450 PF00152 tRNA synthetases class II (D, K and N) ND439_01455 PF12795 Mechanosensitive ion channel porin domain ND439_01455 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND439_01455 PF00924 Mechanosensitive ion channel ND439_01460 PF02666 Phosphatidylserine decarboxylase ND439_01465 PF03193 RsgA GTPase ND439_01470 PF00929 Exonuclease ND439_01490 PF08331 Domain of unknown function (DUF1730) ND439_01495 PF03853 YjeF-related protein N-terminus ND439_01495 PF01256 Carbohydrate kinase ND439_01500 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND439_01505 PF01520 N-acetylmuramoyl-L-alanine amidase ND439_01510 PF01119 DNA mismatch repair protein, C-terminal domain ND439_01510 PF08676 MutL C terminal dimerisation domain ND439_01520 PF17209 Hfq protein ND439_01525 PF13167 GTP-binding GTPase N-terminal ND439_01525 PF16360 GTP-binding GTPase Middle Region ND439_01525 PF01926 50S ribosome-binding GTPase ND439_01530 PF01145 SPFH domain / Band 7 family ND439_01530 PF12221 Bacterial membrane protein N terminal ND439_01535 PF01145 SPFH domain / Band 7 family ND439_01540 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND439_01545 PF00709 Adenylosuccinate synthetase ND439_01550 PF02082 Transcriptional regulator ND439_01555 PF00575 S1 RNA binding domain ND439_01555 PF08206 Ribonuclease B OB domain ND439_01555 PF08461 Ribonuclease R winged-helix domain ND439_01555 PF17876 Cold shock domain ND439_01555 PF00773 RNB domain ND439_01560 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND439_01560 PF00588 SpoU rRNA Methylase family ND439_01580 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND439_01585 PF13954 PapC N-terminal domain ND439_01585 PF00577 Outer membrane usher protein ND439_01585 PF13953 PapC C-terminal domain ND439_01605 PF00326 Prolyl oligopeptidase family ND439_01615 PF01250 Ribosomal protein S6 ND439_01620 PF00436 Single-strand binding protein family ND439_01625 PF01084 Ribosomal protein S18 ND439_01630 PF01281 Ribosomal protein L9, N-terminal domain ND439_01630 PF03948 Ribosomal protein L9, C-terminal domain ND439_01635 PF08525 Opacity-associated protein A N-terminal motif ND439_01635 PF04225 Opacity-associated protein A LysM-like domain ND439_01640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND439_01640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND439_01645 PF04405 Domain of Unknown function (DUF542) ND439_01645 PF01814 Hemerythrin HHE cation binding domain ND439_01650 PF00149 Calcineurin-like phosphoesterase ND439_01650 PF02872 5'-nucleotidase, C-terminal domain ND439_01655 PF00459 Inositol monophosphatase family ND439_01660 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND439_01665 PF06526 Protein of unknown function (DUF1107) ND439_01670 PF03471 Transporter associated domain ND439_01670 PF01595 Cyclin M transmembrane N-terminal domain ND439_01670 PF00571 CBS domain ND439_01675 PF01625 Peptide methionine sulfoxide reductase ND439_01680 PF07244 Surface antigen variable number repeat ND439_01680 PF17243 POTRA domain TamA domain 1 ND439_01680 PF01103 Surface antigen ND439_01685 PF04357 TamB, inner membrane protein subunit of TAM complex ND439_01690 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND439_01695 PF00719 Inorganic pyrophosphatase ND439_01700 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND439_01705 PF01225 Mur ligase family, catalytic domain ND439_01705 PF08245 Mur ligase middle domain ND439_01705 PF02875 Mur ligase family, glutamate ligase domain ND439_01710 PF02863 Arginine repressor, C-terminal domain ND439_01710 PF01316 Arginine repressor, DNA binding domain ND439_01715 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND439_01715 PF00056 lactate/malate dehydrogenase, NAD binding domain ND439_01720 PF13693 Winged helix-turn-helix DNA-binding ND439_01735 PF00348 Polyprenyl synthetase ND439_01740 PF00829 Ribosomal prokaryotic L21 protein ND439_01745 PF01016 Ribosomal L27 protein ND439_01750 PF00892 EamA-like transporter family ND439_01755 PF01018 GTP1/OBG ND439_01755 PF01926 50S ribosome-binding GTPase ND439_01760 PF00512 His Kinase A (phospho-acceptor) domain ND439_01760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_01760 PF00672 HAMP domain ND439_01765 PF00486 Transcriptional regulatory protein, C terminal ND439_01765 PF00072 Response regulator receiver domain ND439_01770 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND439_01775 PF03449 Transcription elongation factor, N-terminal ND439_01775 PF01272 Transcription elongation factor, GreA/GreB, C-term ND439_01780 PF01985 CRS1 / YhbY (CRM) domain ND439_01785 PF01728 FtsJ-like methyltransferase ND439_01790 PF01434 Peptidase family M41 ND439_01790 PF06480 FtsH Extracellular ND439_01790 PF17862 AAA+ lid domain ND439_01790 PF00004 ATPase family associated with various cellular activities (AAA) ND439_01795 PF00809 Pterin binding enzyme ND439_01800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND439_01800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND439_01800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND439_01800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND439_01805 PF03840 Preprotein translocase SecG subunit ND439_01820 PF02576 RimP N-terminal domain ND439_01820 PF17384 RimP C-terminal SH3 domain ND439_01825 PF13184 NusA-like KH domain ND439_01825 PF08529 NusA N-terminal domain ND439_01825 PF00575 S1 RNA binding domain ND439_01830 PF00009 Elongation factor Tu GTP binding domain ND439_01830 PF11987 Translation-initiation factor 2 ND439_01830 PF08364 Bacterial translation initiation factor IF-2 associated region ND439_01830 PF04760 Translation initiation factor IF-2, N-terminal region ND439_01830 PF03144 Elongation factor Tu domain 2 ND439_01835 PF02033 Ribosome-binding factor A ND439_01840 PF09157 Pseudouridine synthase II TruB, C-terminal ND439_01840 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND439_01840 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND439_01845 PF00312 Ribosomal protein S15 ND439_01850 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND439_01850 PF01138 3' exoribonuclease family, domain 1 ND439_01850 PF03725 3' exoribonuclease family, domain 2 ND439_01850 PF00575 S1 RNA binding domain ND439_01850 PF00013 KH domain ND439_01855 PF07719 Tetratricopeptide repeat ND439_01855 PF13181 Tetratricopeptide repeat ND439_01860 PF00271 Helicase conserved C-terminal domain ND439_01860 PF00270 DEAD/DEAH box helicase ND439_01860 PF03880 DbpA RNA binding domain ND439_01860 PF12343 Cold shock protein DEAD box A ND439_01865 PF00296 Luciferase-like monooxygenase ND439_01875 PF03313 Serine dehydratase alpha chain ND439_01880 PF01136 Peptidase family U32 ND439_01885 PF01136 Peptidase family U32 ND439_01890 PF02036 SCP-2 sterol transfer family ND439_01895 PF13508 Acetyltransferase (GNAT) domain ND439_01900 PF01541 GIY-YIG catalytic domain ND439_01905 PF13520 Amino acid permease ND439_01910 PF01276 Orn/Lys/Arg decarboxylase, major domain ND439_01910 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND439_01910 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND439_01915 PF10940 Protein of unknown function (DUF2618) ND439_01925 PF13460 NAD(P)H-binding ND439_01930 PF12706 Beta-lactamase superfamily domain ND439_01940 PF07969 Amidohydrolase family ND439_01945 PF00005 ABC transporter ND439_01950 PF00005 ABC transporter ND439_01955 PF06007 Phosphonate metabolism protein PhnJ ND439_01960 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND439_01965 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND439_01970 PF06754 Phosphonate metabolism protein PhnG ND439_01985 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND439_01985 PF03477 ATP cone domain ND439_01990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND439_01990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND439_01995 PF06877 Regulator of ribonuclease activity B ND439_02000 PF00583 Acetyltransferase (GNAT) family ND439_02005 PF00133 tRNA synthetases class I (I, L, M and V) ND439_02005 PF10458 Valyl tRNA synthetase tRNA binding arm ND439_02005 PF08264 Anticodon-binding domain of tRNA ND439_02010 PF04364 DNA polymerase III chi subunit, HolC ND439_02015 PF02789 Cytosol aminopeptidase family, N-terminal domain ND439_02015 PF00883 Cytosol aminopeptidase family, catalytic domain ND439_02020 PF03739 Lipopolysaccharide export system permease LptF/LptG ND439_02025 PF03739 Lipopolysaccharide export system permease LptF/LptG ND439_02035 PF13356 Arm DNA-binding domain ND439_02035 PF00589 Phage integrase family ND439_02055 PF14659 Phage integrase, N-terminal SAM-like domain ND439_02055 PF00589 Phage integrase family ND439_02140 PF01344 Kelch motif ND439_02145 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND439_02150 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND439_02150 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND439_02150 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND439_02165 PF09093 Lyase, catalytic ND439_02165 PF09092 Lyase, N terminal ND439_02165 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND439_02165 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND439_02170 PF00884 Sulfatase ND439_02175 PF00455 DeoR C terminal sensor domain ND439_02175 PF08220 DeoR-like helix-turn-helix domain ND439_02180 PF08013 Tagatose 6 phosphate kinase ND439_02185 PF01380 SIS domain ND439_02190 PF03830 PTS system sorbose subfamily IIB component ND439_02195 PF03609 PTS system sorbose-specific iic component ND439_02200 PF03613 PTS system mannose/fructose/sorbose family IID component ND439_02210 PF01979 Amidohydrolase family ND439_02215 PF04962 KduI/IolB family ND439_02225 PF07470 Glycosyl Hydrolase Family 88 ND439_02230 PF04055 Radical SAM superfamily ND439_02230 PF13186 Iron-sulfur cluster-binding domain ND439_02235 PF00884 Sulfatase ND439_02245 PF01116 Fructose-bisphosphate aldolase class-II ND439_02255 PF10696 Protein of unknown function (DUF2501) ND439_02260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND439_02275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND439_02280 PF00873 AcrB/AcrD/AcrF family ND439_02285 PF00465 Iron-containing alcohol dehydrogenase ND439_02290 PF02733 Dak1 domain ND439_02295 PF02734 DAK2 domain ND439_02300 PF03610 PTS system fructose IIA component ND439_02300 PF05524 PEP-utilising enzyme, N-terminal ND439_02300 PF00391 PEP-utilising enzyme, mobile domain ND439_02300 PF00381 PTS HPr component phosphorylation site ND439_02305 PF00989 PAS fold ND439_02305 PF02954 Bacterial regulatory protein, Fis family ND439_02305 PF00158 Sigma-54 interaction domain ND439_02310 PF00990 Diguanylate cyclase, GGDEF domain ND439_02315 PF07256 Protein of unknown function (DUF1435) ND439_02335 PF05175 Methyltransferase small domain ND439_02335 PF08468 Methyltransferase small domain N-terminal ND439_02340 PF03603 DNA polymerase III psi subunit ND439_02345 PF00583 Acetyltransferase (GNAT) family ND439_02350 PF03144 Elongation factor Tu domain 2 ND439_02350 PF16658 Class II release factor RF3, C-terminal domain ND439_02350 PF00009 Elongation factor Tu GTP binding domain ND439_02355 PF04972 BON domain ND439_02360 PF07043 Protein of unknown function (DUF1328) ND439_02365 PF01734 Patatin-like phospholipase ND439_02370 PF01026 TatD related DNase ND439_02375 PF07670 Nucleoside recognition ND439_02375 PF07662 Na+ dependent nucleoside transporter C-terminus ND439_02375 PF01773 Na+ dependent nucleoside transporter N-terminus ND439_02380 PF01791 DeoC/LacD family aldolase ND439_02385 PF02885 Glycosyl transferase family, helical bundle domain ND439_02385 PF00591 Glycosyl transferase family, a/b domain ND439_02385 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND439_02390 PF01676 Metalloenzyme superfamily ND439_02395 PF01048 Phosphorylase superfamily ND439_02400 PF10144 Bacterial virulence factor haemolysin ND439_02405 PF18429 Domain of unknown function (DUF5609) ND439_02410 PF18073 Rubredoxin metal binding domain ND439_02415 PF13521 AAA domain ND439_02415 PF01381 Helix-turn-helix ND439_02420 PF00005 ABC transporter ND439_02420 PF12848 ABC transporter ND439_02435 PF00689 Cation transporting ATPase, C-terminus ND439_02435 PF00690 Cation transporter/ATPase, N-terminus ND439_02440 PF01464 Transglycosylase SLT domain ND439_02440 PF14718 Soluble lytic murein transglycosylase L domain ND439_02445 PF01371 Trp repressor protein ND439_02450 PF01931 Protein of unknown function DUF84 ND439_02455 PF00300 Histidine phosphatase superfamily (branch 1) ND439_02460 PF12833 Helix-turn-helix domain ND439_02460 PF06445 GyrI-like small molecule binding domain ND439_02465 PF05981 CreA protein ND439_02470 PF00486 Transcriptional regulatory protein, C terminal ND439_02470 PF00072 Response regulator receiver domain ND439_02480 PF08254 Threonine leader peptide ND439_02485 PF00696 Amino acid kinase family ND439_02485 PF01842 ACT domain ND439_02485 PF13840 ACT domain ND439_02485 PF00742 Homoserine dehydrogenase ND439_02485 PF03447 Homoserine dehydrogenase, NAD binding domain ND439_02490 PF08544 GHMP kinases C terminal ND439_02490 PF00288 GHMP kinases N terminal domain ND439_02495 PF00291 Pyridoxal-phosphate dependent enzyme ND439_02495 PF14821 Threonine synthase N terminus ND439_02500 PF03883 Peroxide stress protein YaaA ND439_02505 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND439_02510 PF00994 Probable molybdopterin binding domain ND439_02515 PF07690 Major Facilitator Superfamily ND439_02525 PF01184 GPR1/FUN34/yaaH family ND439_02530 PF00012 Hsp70 protein ND439_02535 PF00226 DnaJ domain ND439_02535 PF01556 DnaJ C terminal domain ND439_02535 PF00684 DnaJ central domain ND439_02540 PF06965 Na+/H+ antiporter 1 ND439_02545 PF03466 LysR substrate binding domain ND439_02545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_02550 PF01649 Ribosomal protein S20 ND439_02555 PF01687 Riboflavin kinase ND439_02555 PF06574 FAD synthetase ND439_02560 PF08264 Anticodon-binding domain of tRNA ND439_02560 PF00133 tRNA synthetases class I (I, L, M and V) ND439_02560 PF06827 Zinc finger found in FPG and IleRS ND439_02565 PF01252 Signal peptidase (SPase) II ND439_02570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND439_02575 PF02401 LytB protein ND439_02580 PF05173 Dihydrodipicolinate reductase, C-terminus ND439_02580 PF01113 Dihydrodipicolinate reductase, N-terminus ND439_02585 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND439_02585 PF00117 Glutamine amidotransferase class-I ND439_02590 PF02142 MGS-like domain ND439_02590 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND439_02590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND439_02595 PF01810 LysE type translocator ND439_02600 PF06738 Putative threonine/serine exporter ND439_02605 PF12821 Threonine/Serine exporter, ThrE ND439_02610 PF00186 Dihydrofolate reductase ND439_02620 PF00149 Calcineurin-like phosphoesterase ND439_02625 PF04379 ApaG domain ND439_02630 PF00398 Ribosomal RNA adenine dimethylase ND439_02635 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND439_02640 PF00639 PPIC-type PPIASE domain ND439_02640 PF09312 SurA N-terminal domain ND439_02645 PF03968 OstA-like protein ND439_02645 PF04453 LPS transport system D ND439_02650 PF05099 Tellurite resistance protein TerB ND439_02650 PF00226 DnaJ domain ND439_02655 PF00849 RNA pseudouridylate synthase ND439_02660 PF00271 Helicase conserved C-terminal domain ND439_02660 PF12137 RNA polymerase recycling family C-terminal ND439_02660 PF00176 SNF2 family N-terminal domain ND439_02660 PF18339 RapA N-terminal Tudor like domain 1 ND439_02660 PF18337 RapA N-terminal Tudor like domain ND439_02665 PF00136 DNA polymerase family B ND439_02665 PF03104 DNA polymerase family B, exonuclease domain ND439_02670 PF09335 SNARE associated Golgi protein ND439_02675 PF00005 ABC transporter ND439_02680 PF00528 Binding-protein-dependent transport system inner membrane component ND439_02690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND439_02690 PF12793 Sugar transport-related sRNA regulator N-term ND439_02700 PF07690 Major Facilitator Superfamily ND439_02705 PF00694 Aconitase C-terminal domain ND439_02710 PF00330 Aconitase family (aconitate hydratase) ND439_02715 PF00180 Isocitrate/isopropylmalate dehydrogenase ND439_02720 PF00682 HMGL-like ND439_02720 PF08502 LeuA allosteric (dimerisation) domain ND439_02725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_02725 PF03466 LysR substrate binding domain ND439_02730 PF00501 AMP-binding enzyme ND439_02735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND439_02735 PF00205 Thiamine pyrophosphate enzyme, central domain ND439_02735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND439_02740 PF10369 Small subunit of acetolactate synthase ND439_02745 PF00356 Bacterial regulatory proteins, lacI family ND439_02745 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND439_02750 PF06610 L-alanine exporter ND439_02755 PF02381 MraZ protein, putative antitoxin-like ND439_02760 PF01795 MraW methylase family ND439_02765 PF04999 Cell division protein FtsL ND439_02770 PF03717 Penicillin-binding Protein dimerisation domain ND439_02770 PF00905 Penicillin binding protein transpeptidase domain ND439_02775 PF02875 Mur ligase family, glutamate ligase domain ND439_02775 PF08245 Mur ligase middle domain ND439_02775 PF01225 Mur ligase family, catalytic domain ND439_02780 PF01225 Mur ligase family, catalytic domain ND439_02780 PF08245 Mur ligase middle domain ND439_02780 PF02875 Mur ligase family, glutamate ligase domain ND439_02785 PF00953 Glycosyl transferase family 4 ND439_02785 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND439_02790 PF02875 Mur ligase family, glutamate ligase domain ND439_02790 PF08245 Mur ligase middle domain ND439_02795 PF01098 Cell cycle protein ND439_02800 PF03033 Glycosyltransferase family 28 N-terminal domain ND439_02800 PF04101 Glycosyltransferase family 28 C-terminal domain ND439_02805 PF08245 Mur ligase middle domain ND439_02805 PF01225 Mur ligase family, catalytic domain ND439_02805 PF02875 Mur ligase family, glutamate ligase domain ND439_02810 PF01820 D-ala D-ala ligase N-terminus ND439_02810 PF07478 D-ala D-ala ligase C-terminus ND439_02815 PF08478 POTRA domain, FtsQ-type ND439_02815 PF03799 Cell division protein FtsQ ND439_02820 PF02491 SHS2 domain inserted in FTSA ND439_02825 PF12327 FtsZ family, C-terminal domain ND439_02825 PF00091 Tubulin/FtsZ family, GTPase domain ND439_02830 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND439_02840 PF06558 Secretion monitor precursor protein (SecM) ND439_02845 PF07517 SecA DEAD-like domain ND439_02845 PF01043 SecA preprotein cross-linking domain ND439_02845 PF07516 SecA Wing and Scaffold domain ND439_02845 PF02810 SEC-C motif ND439_02850 PF00293 NUDIX domain ND439_02855 PF03884 DNA gyrase inhibitor YacG ND439_02860 PF07072 Cell division protein ND439_02865 PF01121 Dephospho-CoA kinase ND439_02870 PF00478 IMP dehydrogenase / GMP reductase domain ND439_02875 PF00482 Type II secretion system (T2SS), protein F ND439_02880 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND439_02880 PF00437 Type II/IV secretion system protein ND439_02885 PF07963 Prokaryotic N-terminal methylation motif ND439_02890 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND439_02890 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND439_02895 PF01510 N-acetylmuramoyl-L-alanine amidase ND439_02900 PF17113 Regulatory signalling modulator protein AmpE ND439_02910 PF01476 LysM domain ND439_02910 PF07979 Intimin C-type lectin domain ND439_02910 PF11924 Inverse autotransporter, beta-domain ND439_02910 PF02369 Bacterial Ig-like domain (group 1) ND439_02915 PF02368 Bacterial Ig-like domain (group 2) ND439_02920 PF00324 Amino acid permease ND439_02925 PF07729 FCD domain ND439_02925 PF00392 Bacterial regulatory proteins, gntR family ND439_02930 PF17831 Pyruvate dehydrogenase E1 component middle domain ND439_02930 PF00456 Transketolase, thiamine diphosphate binding domain ND439_02935 PF00364 Biotin-requiring enzyme ND439_02935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND439_02935 PF02817 e3 binding domain ND439_02940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND439_02940 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_02950 PF00330 Aconitase family (aconitate hydratase) ND439_02950 PF11791 Aconitate B N-terminal domain ND439_02950 PF06434 Aconitate hydratase 2 N-terminus ND439_02955 PF06062 Uncharacterised protein family (UPF0231) ND439_02960 PF00892 EamA-like transporter family ND439_02965 PF02675 S-adenosylmethionine decarboxylase ND439_02970 PF17284 Spermidine synthase tetramerisation domain ND439_02975 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND439_02980 PF07731 Multicopper oxidase ND439_02980 PF07732 Multicopper oxidase ND439_02980 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND439_02980 PF00394 Multicopper oxidase ND439_02985 PF00156 Phosphoribosyl transferase domain ND439_02990 PF00484 Carbonic anhydrase ND439_02995 PF00005 ABC transporter ND439_03000 PF01061 ABC-2 type transporter ND439_03005 PF01522 Polysaccharide deacetylase ND439_03010 PF02261 Aspartate decarboxylase ND439_03015 PF02569 Pantoate-beta-alanine ligase ND439_03020 PF02548 Ketopantoate hydroxymethyltransferase ND439_03025 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND439_03030 PF12627 Probable RNA and SrmB- binding site of polymerase A ND439_03030 PF01743 Poly A polymerase head domain ND439_03030 PF12626 Polymerase A arginine-rich C-terminus ND439_03035 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND439_03040 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND439_03045 PF03749 Sugar fermentation stimulation protein RE domain ND439_03045 PF17746 SfsA N-terminal OB domain ND439_03050 PF02834 LigT like Phosphoesterase ND439_03055 PF00270 DEAD/DEAH box helicase ND439_03055 PF04408 Helicase associated domain (HA2) ND439_03055 PF00271 Helicase conserved C-terminal domain ND439_03055 PF08482 ATP-dependent helicase C-terminal ND439_03060 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND439_03060 PF00912 Transglycosylase ND439_03060 PF14814 Bifunctional transglycosylase second domain ND439_03060 PF00905 Penicillin binding protein transpeptidase domain ND439_03065 PF00202 Aminotransferase class-III ND439_03070 PF00654 Voltage gated chloride channel ND439_03075 PF01521 Iron-sulphur cluster biosynthesis ND439_03080 PF03458 UPF0126 domain ND439_03085 PF01497 Periplasmic binding protein ND439_03090 PF01048 Phosphorylase superfamily ND439_03095 PF01966 HD domain ND439_03095 PF13286 Phosphohydrolase-associated domain ND439_03100 PF00595 PDZ domain ND439_03105 PF00672 HAMP domain ND439_03105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_03105 PF01627 Hpt domain ND439_03105 PF00072 Response regulator receiver domain ND439_03105 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND439_03105 PF00512 His Kinase A (phospho-acceptor) domain ND439_03110 PF01938 TRAM domain ND439_03110 PF05958 tRNA (Uracil-5-)-methyltransferase ND439_03115 PF04607 Region found in RelA / SpoT proteins ND439_03115 PF13291 ACT domain ND439_03115 PF02824 TGS domain ND439_03120 PF03819 MazG nucleotide pyrophosphohydrolase domain ND439_03125 PF06418 CTP synthase N-terminus ND439_03125 PF00117 Glutamine amidotransferase class-I ND439_03130 PF00113 Enolase, C-terminal TIM barrel domain ND439_03130 PF03952 Enolase, N-terminal domain ND439_03135 PF04055 Radical SAM superfamily ND439_03140 PF01242 6-pyruvoyl tetrahydropterin synthase ND439_03145 PF00667 FAD binding domain ND439_03145 PF00175 Oxidoreductase NAD-binding domain ND439_03145 PF00258 Flavodoxin ND439_03150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND439_03150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND439_03155 PF01507 Phosphoadenosine phosphosulfate reductase family ND439_03170 PF04389 Peptidase family M28 ND439_03175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND439_03175 PF10414 Sirohaem synthase dimerisation region ND439_03175 PF14824 Sirohaem biosynthesis protein central ND439_03180 PF01507 Phosphoadenosine phosphosulfate reductase family ND439_03185 PF00009 Elongation factor Tu GTP binding domain ND439_03195 PF12084 Protein of unknown function (DUF3561) ND439_03200 PF04977 Septum formation initiator ND439_03205 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND439_03210 PF02542 YgbB family ND439_03215 PF01142 tRNA pseudouridine synthase D (TruD) ND439_03220 PF01975 Survival protein SurE ND439_03230 PF01551 Peptidase family M23 ND439_03230 PF01476 LysM domain ND439_03235 PF04545 Sigma-70, region 4 ND439_03235 PF04539 Sigma-70 region 3 ND439_03235 PF04542 Sigma-70 region 2 ND439_03235 PF00140 Sigma-70 factor, region 1.2 ND439_03240 PF01624 MutS domain I ND439_03240 PF05188 MutS domain II ND439_03240 PF05192 MutS domain III ND439_03240 PF05190 MutS family domain IV ND439_03240 PF00488 MutS domain V ND439_03275 PF00668 Condensation domain ND439_03275 PF00501 AMP-binding enzyme ND439_03275 PF13193 AMP-binding enzyme C-terminal domain ND439_03275 PF00550 Phosphopantetheine attachment site ND439_03310 PF00550 Phosphopantetheine attachment site ND439_03330 PF18416 N-acetylglucosamine binding protein domain 2 ND439_03330 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND439_03335 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND439_03340 PF01478 Type IV leader peptidase family ND439_03340 PF06750 Bacterial Peptidase A24 N-terminal domain ND439_03350 PF05134 Type II secretion system (T2SS), protein L ND439_03350 PF12693 GspL periplasmic domain ND439_03355 PF03934 Type II secretion system (T2SS), protein K ND439_03360 PF11612 Type II secretion system (T2SS), protein J ND439_03360 PF07963 Prokaryotic N-terminal methylation motif ND439_03365 PF02501 Type II secretion system (T2SS), protein I ND439_03365 PF07963 Prokaryotic N-terminal methylation motif ND439_03375 PF08334 Type II secretion system (T2SS), protein G ND439_03375 PF07963 Prokaryotic N-terminal methylation motif ND439_03380 PF00482 Type II secretion system (T2SS), protein F ND439_03385 PF00437 Type II/IV secretion system protein ND439_03390 PF03958 Bacterial type II/III secretion system short domain ND439_03390 PF00263 Bacterial type II and III secretion system protein ND439_03395 PF11356 Type II secretion system protein C ND439_03420 PF05683 Fumarase C-terminus ND439_03420 PF05681 Fumarate hydratase (Fumerase) ND439_03425 PF07690 Major Facilitator Superfamily ND439_03430 PF02464 Competence-damaged protein ND439_03435 PF00154 recA bacterial DNA recombination protein ND439_03440 PF02631 RecX family ND439_03445 PF02272 DHHA1 domain ND439_03445 PF01411 tRNA synthetases class II (A) ND439_03445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND439_03450 PF02599 Global regulator protein family ND439_03475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND439_03475 PF01411 tRNA synthetases class II (A) ND439_03480 PF13419 Haloacid dehalogenase-like hydrolase ND439_03485 PF09335 SNARE associated Golgi protein ND439_03490 PF04262 Glutamate-cysteine ligase ND439_03495 PF02664 S-Ribosylhomocysteinase (LuxS) ND439_03500 PF03471 Transporter associated domain ND439_03500 PF01595 Cyclin M transmembrane N-terminal domain ND439_03500 PF00571 CBS domain ND439_03505 PF01578 Cytochrome C assembly protein ND439_03510 PF00448 SRP54-type protein, GTPase domain ND439_03510 PF02881 SRP54-type protein, helical bundle domain ND439_03510 PF02978 Signal peptide binding domain ND439_03515 PF00886 Ribosomal protein S16 ND439_03520 PF05239 PRC-barrel domain ND439_03520 PF01782 RimM N-terminal domain ND439_03525 PF01746 tRNA (Guanine-1)-methyltransferase ND439_03530 PF01245 Ribosomal protein L19 ND439_03535 PF04338 Protein of unknown function, DUF481 ND439_03540 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND439_03545 PF04397 LytTr DNA-binding domain ND439_03545 PF00072 Response regulator receiver domain ND439_03550 PF00793 DAHP synthetase I family ND439_03555 PF01817 Chorismate mutase type II ND439_03555 PF02153 Prephenate dehydrogenase ND439_03560 PF00800 Prephenate dehydratase ND439_03560 PF01817 Chorismate mutase type II ND439_03570 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND439_03575 PF13525 Outer membrane lipoprotein ND439_03580 PF00849 RNA pseudouridylate synthase ND439_03580 PF01479 S4 domain ND439_03585 PF02578 Multi-copper polyphenol oxidoreductase laccase ND439_03590 PF10431 C-terminal, D2-small domain, of ClpB protein ND439_03590 PF02861 Clp amino terminal domain, pathogenicity island component ND439_03590 PF07724 AAA domain (Cdc48 subfamily) ND439_03590 PF17871 AAA lid domain ND439_03590 PF00004 ATPase family associated with various cellular activities (AAA) ND439_03620 PF03372 Endonuclease/Exonuclease/phosphatase family ND439_03625 PF01476 LysM domain ND439_03625 PF01464 Transglycosylase SLT domain ND439_03630 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND439_03630 PF00753 Metallo-beta-lactamase superfamily ND439_03635 PF08241 Methyltransferase domain ND439_03640 PF00075 RNase H ND439_03645 PF00929 Exonuclease ND439_03655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND439_03655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND439_03655 PF09317 Domain of unknown function (DUF1974) ND439_03660 PF13580 SIS domain ND439_03665 PF13230 Glutamine amidotransferases class-II ND439_03670 PF03734 L,D-transpeptidase catalytic domain ND439_03675 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND439_03675 PF11973 NQRA C-terminal domain ND439_03680 PF03116 NQR2, RnfD, RnfE family ND439_03685 PF04205 FMN-binding domain ND439_03690 PF02508 Rnf-Nqr subunit, membrane protein ND439_03695 PF02508 Rnf-Nqr subunit, membrane protein ND439_03700 PF00970 Oxidoreductase FAD-binding domain ND439_03700 PF00111 2Fe-2S iron-sulfur cluster binding domain ND439_03700 PF00175 Oxidoreductase NAD-binding domain ND439_03705 PF02424 ApbE family ND439_03710 PF04400 (Na+)-NQR maturation NqrM ND439_03715 PF03009 Glycerophosphoryl diester phosphodiesterase family ND439_03720 PF00817 impB/mucB/samB family ND439_03720 PF11799 impB/mucB/samB family C-terminal domain ND439_03720 PF11798 IMS family HHH motif ND439_03725 PF07687 Peptidase dimerisation domain ND439_03725 PF01546 Peptidase family M20/M25/M40 ND439_03730 PF00156 Phosphoribosyl transferase domain ND439_03735 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND439_03740 PF07417 Sigma factor-binding transcriptional regulator Crl ND439_03745 PF00696 Amino acid kinase family ND439_03745 PF01472 PUA domain ND439_03750 PF00171 Aldehyde dehydrogenase family ND439_03755 PF07238 PilZ domain ND439_03755 PF07317 Flagellar regulator YcgR ND439_03780 PF07715 TonB-dependent Receptor Plug Domain ND439_03780 PF00593 TonB dependent receptor ND439_03785 PF01202 Shikimate kinase ND439_03805 PF07302 AroM protein ND439_03810 PF06865 Pyrimidine/purine nucleoside phosphorylase ND439_03815 PF04381 Putative exonuclease, RdgC ND439_03820 PF00480 ROK family ND439_03825 PF13476 AAA domain ND439_03830 PF12320 Type 5 capsule protein repressor C-terminal domain ND439_03830 PF00149 Calcineurin-like phosphoesterase ND439_03835 PF00072 Response regulator receiver domain ND439_03835 PF00486 Transcriptional regulatory protein, C terminal ND439_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_03840 PF00512 His Kinase A (phospho-acceptor) domain ND439_03840 PF00989 PAS fold ND439_03840 PF11808 Phosphate regulon sensor protein PhoR ND439_03845 PF12849 PBP superfamily domain ND439_03850 PF05525 Branched-chain amino acid transport protein ND439_03855 PF00324 Amino acid permease ND439_03860 PF00128 Alpha amylase, catalytic domain ND439_03860 PF02903 Alpha amylase, N-terminal ig-like domain ND439_03870 PF00578 AhpC/TSA family ND439_03870 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND439_03875 PF04336 Acyl carrier protein phosphodiesterase ND439_03880 PF02547 Queuosine biosynthesis protein ND439_03885 PF01702 Queuine tRNA-ribosyltransferase ND439_03890 PF02699 Preprotein translocase subunit ND439_03895 PF07549 SecD/SecF GG Motif ND439_03895 PF13721 SecD export protein N-terminal TM region ND439_03895 PF02355 Protein export membrane protein ND439_03900 PF07549 SecD/SecF GG Motif ND439_03900 PF02355 Protein export membrane protein ND439_03905 PF03477 ATP cone domain ND439_03910 PF01872 RibD C-terminal domain ND439_03910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND439_03915 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND439_03920 PF01029 NusB family ND439_03925 PF00586 AIR synthase related protein, N-terminal domain ND439_03925 PF02769 AIR synthase related protein, C-terminal domain ND439_03930 PF04608 Phosphatidylglycerophosphatase A ND439_03935 PF02780 Transketolase, C-terminal domain ND439_03935 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND439_03935 PF02779 Transketolase, pyrimidine binding domain ND439_03940 PF00348 Polyprenyl synthetase ND439_03945 PF02609 Exonuclease VII small subunit ND439_03950 PF02568 Thiamine biosynthesis protein (ThiI) ND439_03950 PF02926 THUMP domain ND439_03955 PF02954 Bacterial regulatory protein, Fis family ND439_03955 PF00072 Response regulator receiver domain ND439_03955 PF14532 Sigma-54 interaction domain ND439_03960 PF00672 HAMP domain ND439_03960 PF00512 His Kinase A (phospho-acceptor) domain ND439_03960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_03970 PF07690 Major Facilitator Superfamily ND439_03975 PF01965 DJ-1/PfpI family ND439_03980 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND439_03980 PF02558 Ketopantoate reductase PanE/ApbA ND439_03985 PF04461 Protein of unknown function (DUF520) ND439_03990 PF07690 Major Facilitator Superfamily ND439_03995 PF01040 UbiA prenyltransferase family ND439_04000 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND439_04005 PF00510 Cytochrome c oxidase subunit III ND439_04010 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND439_04015 PF06481 COX Aromatic Rich Motif ND439_04015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND439_04020 PF03502 Nucleoside-specific channel-forming protein, Tsx ND439_04025 PF07690 Major Facilitator Superfamily ND439_04030 PF03923 Uncharacterized lipoprotein ND439_04030 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND439_04035 PF01722 BolA-like protein ND439_04040 PF05698 Bacterial trigger factor protein (TF) C-terminus ND439_04040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND439_04040 PF05697 Bacterial trigger factor protein (TF) ND439_04045 PF00574 Clp protease ND439_04050 PF07724 AAA domain (Cdc48 subfamily) ND439_04050 PF10431 C-terminal, D2-small domain, of ClpB protein ND439_04050 PF06689 ClpX C4-type zinc finger ND439_04055 PF00004 ATPase family associated with various cellular activities (AAA) ND439_04055 PF05362 Lon protease (S16) C-terminal proteolytic domain ND439_04055 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND439_04060 PF00216 Bacterial DNA-binding protein ND439_04065 PF13145 PPIC-type PPIASE domain ND439_04080 PF06508 Queuosine biosynthesis protein QueC ND439_04085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND439_04085 PF12793 Sugar transport-related sRNA regulator N-term ND439_04100 PF01037 Lrp/AsnC ligand binding domain ND439_04100 PF13404 AsnC-type helix-turn-helix domain ND439_04105 PF00664 ABC transporter transmembrane region ND439_04105 PF00005 ABC transporter ND439_04110 PF00664 ABC transporter transmembrane region ND439_04110 PF00005 ABC transporter ND439_04115 PF00543 Nitrogen regulatory protein P-II ND439_04120 PF00909 Ammonium Transporter Family ND439_04130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND439_04140 PF05321 Haemolysin expression modulating protein ND439_04145 PF10757 Biofilm formation regulator YbaJ ND439_04155 PF00444 Ribosomal protein L36 ND439_04160 PF01197 Ribosomal protein L31 ND439_04165 PF00873 AcrB/AcrD/AcrF family ND439_04170 PF00529 HlyD membrane-fusion protein of T1SS ND439_04170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND439_04175 PF08361 MAATS-type transcriptional repressor, C-terminal region ND439_04175 PF00440 Bacterial regulatory proteins, tetR family ND439_04180 PF02635 DsrE/DsrF-like family ND439_04185 PF12795 Mechanosensitive ion channel porin domain ND439_04185 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND439_04185 PF00924 Mechanosensitive ion channel ND439_04190 PF10689 Protein of unknown function (DUF2496) ND439_04200 PF04304 Protein of unknown function (DUF454) ND439_04205 PF00156 Phosphoribosyl transferase domain ND439_04210 PF01970 Tripartite tricarboxylate transporter TctA family ND439_04225 PF00072 Response regulator receiver domain ND439_04225 PF00486 Transcriptional regulatory protein, C terminal ND439_04230 PF00512 His Kinase A (phospho-acceptor) domain ND439_04230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_04235 PF12169 DNA polymerase III subunits gamma and tau domain III ND439_04235 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND439_04235 PF12170 DNA polymerase III tau subunit V interacting with alpha ND439_04240 PF02575 YbaB/EbfC DNA-binding family ND439_04245 PF02132 RecR protein ND439_04245 PF13662 Toprim domain ND439_04250 PF00183 Hsp90 protein ND439_04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_04255 PF05191 Adenylate kinase, active site lid ND439_04260 PF00762 Ferrochelatase ND439_04265 PF02706 Chain length determinant protein ND439_04270 PF00294 pfkB family carbohydrate kinase ND439_04275 PF00999 Sodium/hydrogen exchanger family ND439_04275 PF02254 TrkA-N domain ND439_04280 PF02872 5'-nucleotidase, C-terminal domain ND439_04280 PF00149 Calcineurin-like phosphoesterase ND439_04285 PF04073 Aminoacyl-tRNA editing domain ND439_04290 PF01963 TraB family ND439_04295 PF00403 Heavy-metal-associated domain ND439_04300 PF13411 MerR HTH family regulatory protein ND439_04305 PF01957 NfeD-like C-terminal, partner-binding ND439_04310 PF01145 SPFH domain / Band 7 family ND439_04310 PF16200 C-terminal region of band_7 ND439_04315 PF00085 Thioredoxin ND439_04320 PF00106 short chain dehydrogenase ND439_04325 PF13472 GDSL-like Lipase/Acylhydrolase family ND439_04330 PF00005 ABC transporter ND439_04340 PF02222 ATP-grasp domain ND439_04340 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND439_04345 PF00731 AIR carboxylase ND439_04350 PF00149 Calcineurin-like phosphoesterase ND439_04355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND439_04360 PF09190 DALR domain ND439_04360 PF01406 tRNA synthetases class I (C) catalytic domain ND439_04375 PF00419 Fimbrial protein ND439_04380 PF13954 PapC N-terminal domain ND439_04380 PF13953 PapC C-terminal domain ND439_04380 PF00577 Outer membrane usher protein ND439_04385 PF02753 Pili assembly chaperone PapD, C-terminal domain ND439_04385 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND439_04420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND439_04420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND439_04430 PF01022 Bacterial regulatory protein, arsR family ND439_04435 PF02040 Arsenical pump membrane protein ND439_04440 PF03960 ArsC family ND439_04450 PF00501 AMP-binding enzyme ND439_04475 PF01292 Prokaryotic cytochrome b561 ND439_04485 PF00343 Carbohydrate phosphorylase ND439_04495 PF00072 Response regulator receiver domain ND439_04495 PF00486 Transcriptional regulatory protein, C terminal ND439_04505 PF00483 Nucleotidyl transferase ND439_04515 PF00535 Glycosyl transferase family 2 ND439_04515 PF07238 PilZ domain ND439_04515 PF03552 Cellulose synthase ND439_04535 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND439_04535 PF00703 Glycosyl hydrolases family 2 ND439_04535 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND439_04535 PF16355 Domain of unknown function (DUF4982) ND439_04540 PF00072 Response regulator receiver domain ND439_04540 PF00672 HAMP domain ND439_04540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_04540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND439_04540 PF01627 Hpt domain ND439_04540 PF00512 His Kinase A (phospho-acceptor) domain ND439_04545 PF00072 Response regulator receiver domain ND439_04545 PF00990 Diguanylate cyclase, GGDEF domain ND439_04550 PF00440 Bacterial regulatory proteins, tetR family ND439_04575 PF00196 Bacterial regulatory proteins, luxR family ND439_04580 PF00313 'Cold-shock' DNA-binding domain ND439_04585 PF00313 'Cold-shock' DNA-binding domain ND439_04590 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND439_04600 PF00990 Diguanylate cyclase, GGDEF domain ND439_04600 PF05230 MASE2 domain ND439_04605 PF02416 mttA/Hcf106 family ND439_04610 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND439_04610 PF04055 Radical SAM superfamily ND439_04615 PF03099 Biotin/lipoate A/B protein ligase family ND439_04620 PF04359 Protein of unknown function (DUF493) ND439_04625 PF00768 D-alanyl-D-alanine carboxypeptidase ND439_04625 PF07943 Penicillin-binding protein 5, C-terminal domain ND439_04630 PF03330 Lytic transglycolase ND439_04630 PF05036 Sporulation related domain ND439_04635 PF01098 Cell cycle protein ND439_04640 PF03717 Penicillin-binding Protein dimerisation domain ND439_04640 PF00905 Penicillin binding protein transpeptidase domain ND439_04645 PF02590 Predicted SPOUT methyltransferase ND439_04655 PF01467 Cytidylyltransferase-like ND439_04660 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND439_04660 PF06144 DNA polymerase III, delta subunit ND439_04665 PF04390 Lipopolysaccharide-assembly ND439_04670 PF13603 Leucyl-tRNA synthetase, Domain 2 ND439_04670 PF08264 Anticodon-binding domain of tRNA ND439_04670 PF00133 tRNA synthetases class I (I, L, M and V) ND439_04675 PF07295 Zinc-ribbon containing domain ND439_04680 PF00005 ABC transporter ND439_04685 PF00528 Binding-protein-dependent transport system inner membrane component ND439_04690 PF00528 Binding-protein-dependent transport system inner membrane component ND439_04695 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_04700 PF00795 Carbon-nitrogen hydrolase ND439_04705 PF00571 CBS domain ND439_04705 PF03471 Transporter associated domain ND439_04710 PF02130 Uncharacterized protein family UPF0054 ND439_04715 PF02562 PhoH-like protein ND439_04720 PF01938 TRAM domain ND439_04720 PF04055 Radical SAM superfamily ND439_04720 PF00919 Uncharacterized protein family UPF0004 ND439_04725 PF01494 FAD binding domain ND439_04760 PF00733 Asparagine synthase ND439_04760 PF13537 Glutamine amidotransferase domain ND439_04765 PF13344 Haloacid dehalogenase-like hydrolase ND439_04770 PF01047 MarR family ND439_04770 PF00480 ROK family ND439_04775 PF01979 Amidohydrolase family ND439_04780 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND439_04785 PF00367 phosphotransferase system, EIIB ND439_04785 PF02378 Phosphotransferase system, EIIC ND439_04785 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND439_04790 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND439_04790 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND439_04795 PF03573 outer membrane porin, OprD family ND439_04800 PF13982 YbfN-like lipoprotein ND439_04805 PF03173 Putative carbohydrate binding domain ND439_04805 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND439_04805 PF00728 Glycosyl hydrolase family 20, catalytic domain ND439_04805 PF02838 Glycosyl hydrolase family 20, domain 2 ND439_04810 PF01475 Ferric uptake regulator family ND439_04815 PF00258 Flavodoxin ND439_04820 PF00672 HAMP domain ND439_04820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND439_04820 PF02203 Tar ligand binding domain homologue ND439_04825 PF01402 Ribbon-helix-helix protein, copG family ND439_04830 PF12697 Alpha/beta hydrolase family ND439_04835 PF03925 SeqA protein C-terminal domain ND439_04835 PF17206 SeqA protein N-terminal domain ND439_04840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND439_04840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND439_04840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND439_04840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND439_04850 PF00072 Response regulator receiver domain ND439_04850 PF00486 Transcriptional regulatory protein, C terminal ND439_04855 PF13493 Domain of unknown function (DUF4118) ND439_04855 PF13492 GAF domain ND439_04855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_04855 PF00512 His Kinase A (phospho-acceptor) domain ND439_04855 PF02702 Osmosensitive K+ channel His kinase sensor domain ND439_04860 PF02669 K+-transporting ATPase, c chain ND439_04870 PF03814 Potassium-transporting ATPase A subunit ND439_04875 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND439_04880 PF10725 Protein of unknown function (DUF2517) ND439_04885 PF08349 Protein of unknown function (DUF1722) ND439_04890 PF00875 DNA photolyase ND439_04890 PF03441 FAD binding domain of DNA photolyase ND439_04895 PF02112 cAMP phosphodiesterases class-II ND439_04900 PF01784 NIF3 (NGG1p interacting factor 3) ND439_04905 PF02682 Carboxyltransferase domain, subdomain C and D ND439_04910 PF02626 Carboxyltransferase domain, subdomain A and B ND439_04915 PF03746 LamB/YcsF family ND439_04950 PF00285 Citrate synthase, C-terminal domain ND439_04955 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND439_04960 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND439_04965 PF00890 FAD binding domain ND439_04965 PF02910 Fumarate reductase flavoprotein C-term ND439_04970 PF13085 2Fe-2S iron-sulfur cluster binding domain ND439_04975 PF16870 2-oxoglutarate dehydrogenase C-terminal ND439_04975 PF02779 Transketolase, pyrimidine binding domain ND439_04975 PF00676 Dehydrogenase E1 component ND439_04975 PF16078 2-oxoglutarate dehydrogenase N-terminus ND439_04980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND439_04980 PF00364 Biotin-requiring enzyme ND439_04980 PF02817 e3 binding domain ND439_04985 PF08442 ATP-grasp domain ND439_04985 PF00549 CoA-ligase ND439_04990 PF02629 CoA binding domain ND439_04990 PF00549 CoA-ligase ND439_04995 PF00149 Calcineurin-like phosphoesterase ND439_04995 PF02872 5'-nucleotidase, C-terminal domain ND439_05000 PF01654 Cytochrome bd terminal oxidase subunit I ND439_05005 PF02322 Cytochrome bd terminal oxidase subunit II ND439_05010 PF08173 Membrane bound YbgT-like protein ND439_05015 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND439_05020 PF03061 Thioesterase superfamily ND439_05025 PF01618 MotA/TolQ/ExbB proton channel family ND439_05030 PF02472 Biopolymer transport protein ExbD/TolR ND439_05035 PF06519 TolA C-terminal ND439_05035 PF06519 TolA C-terminal ND439_05040 PF07676 WD40-like Beta Propeller Repeat ND439_05040 PF04052 TolB amino-terminal domain ND439_05045 PF00691 OmpA family ND439_05050 PF13174 Tetratricopeptide repeat ND439_05050 PF16331 TolA binding protein trimerisation ND439_05080 PF02445 Quinolinate synthetase A protein ND439_05085 PF04973 Nicotinamide mononucleotide transporter ND439_05090 PF00989 PAS fold ND439_05090 PF00512 His Kinase A (phospho-acceptor) domain ND439_05090 PF00072 Response regulator receiver domain ND439_05090 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_05090 PF01627 Hpt domain ND439_05090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_05095 PF00196 Bacterial regulatory proteins, luxR family ND439_05095 PF00072 Response regulator receiver domain ND439_05100 PF00793 DAHP synthetase I family ND439_05105 PF00300 Histidine phosphatase superfamily (branch 1) ND439_05115 PF01263 Aldose 1-epimerase ND439_05120 PF10509 Galactokinase galactose-binding signature ND439_05120 PF08544 GHMP kinases C terminal ND439_05120 PF00288 GHMP kinases N terminal domain ND439_05125 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND439_05125 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND439_05130 PF16363 GDP-mannose 4,6 dehydratase ND439_05145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_05145 PF03459 TOBE domain ND439_05150 PF10766 Multidrug efflux pump-associated protein AcrZ ND439_05160 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05165 PF00005 ABC transporter ND439_05165 PF03459 TOBE domain ND439_05175 PF10282 Lactonase, 7-bladed beta-propeller ND439_05180 PF00202 Aminotransferase class-III ND439_05185 PF06968 Biotin and Thiamin Synthesis associated domain ND439_05185 PF04055 Radical SAM superfamily ND439_05190 PF00155 Aminotransferase class I and II ND439_05195 PF08241 Methyltransferase domain ND439_05205 PF00005 ABC transporter ND439_05210 PF00271 Helicase conserved C-terminal domain ND439_05210 PF02151 UvrB/uvrC motif ND439_05210 PF04851 Type III restriction enzyme, res subunit ND439_05210 PF17757 UvrB interaction domain ND439_05210 PF12344 Ultra-violet resistance protein B ND439_05215 PF09905 DNA-binding protein VF530 ND439_05230 PF01032 FecCD transport family ND439_05235 PF00005 ABC transporter ND439_05240 PF01933 Uncharacterised protein family UPF0052 ND439_05245 PF06463 Molybdenum Cofactor Synthesis C ND439_05245 PF04055 Radical SAM superfamily ND439_05250 PF01967 MoaC family ND439_05255 PF02597 ThiS family ND439_05260 PF02391 MoaE protein ND439_05265 PF01027 Inhibitor of apoptosis-promoting Bax1 ND439_05280 PF00005 ABC transporter ND439_05285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND439_05290 PF09209 Tetracyclin repressor-like, C-terminal domain ND439_05290 PF00440 Bacterial regulatory proteins, tetR family ND439_05295 PF00271 Helicase conserved C-terminal domain ND439_05295 PF00270 DEAD/DEAH box helicase ND439_05300 PF01207 Dihydrouridine synthase (Dus) ND439_05310 PF00768 D-alanyl-D-alanine carboxypeptidase ND439_05315 PF01565 FAD binding domain ND439_05315 PF09330 D-lactate dehydrogenase, membrane binding ND439_05320 PF01928 CYTH domain ND439_05325 PF01844 HNH endonuclease ND439_05335 PF04226 Transglycosylase associated protein ND439_05340 PF00005 ABC transporter ND439_05350 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05355 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05360 PF07308 Protein of unknown function (DUF1456) ND439_05365 PF00581 Rhodanese-like domain ND439_05370 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND439_05375 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05380 PF00005 ABC transporter ND439_05385 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05390 PF13520 Amino acid permease ND439_05395 PF01276 Orn/Lys/Arg decarboxylase, major domain ND439_05395 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND439_05395 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND439_05405 PF00892 EamA-like transporter family ND439_05410 PF00267 Gram-negative porin ND439_05415 PF06733 DEAD_2 ND439_05415 PF13307 Helicase C-terminal domain ND439_05420 PF02885 Glycosyl transferase family, helical bundle domain ND439_05425 PF05971 RNA methyltransferase ND439_05430 PF00005 ABC transporter ND439_05435 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05440 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_05445 PF00210 Ferritin-like domain ND439_05450 PF13649 Methyltransferase domain ND439_05455 PF00892 EamA-like transporter family ND439_05460 PF13505 Outer membrane protein beta-barrel domain ND439_05465 PF00571 CBS domain ND439_05465 PF01769 Divalent cation transporter ND439_05465 PF03448 MgtE intracellular N domain ND439_05470 PF16916 Dimerisation domain of Zinc Transporter ND439_05470 PF01545 Cation efflux family ND439_05475 PF00005 ABC transporter ND439_05475 PF12848 ABC transporter ND439_05480 PF00899 ThiF family ND439_05485 PF03454 MoeA C-terminal region (domain IV) ND439_05485 PF03453 MoeA N-terminal region (domain I and II) ND439_05485 PF00994 Probable molybdopterin binding domain ND439_05495 PF00756 Putative esterase ND439_05500 PF08240 Alcohol dehydrogenase GroES-like domain ND439_05500 PF00107 Zinc-binding dehydrogenase ND439_05505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_05505 PF03466 LysR substrate binding domain ND439_05510 PF06779 Uncharacterised MFS-type transporter YbfB ND439_05515 PF01227 GTP cyclohydrolase I ND439_05520 PF04235 Protein of unknown function (DUF418) ND439_05525 PF00356 Bacterial regulatory proteins, lacI family ND439_05530 PF13407 Periplasmic binding protein domain ND439_05535 PF00005 ABC transporter ND439_05540 PF02653 Branched-chain amino acid transport system / permease component ND439_05545 PF02698 DUF218 domain ND439_05550 PF03949 Malic enzyme, NAD binding domain ND439_05550 PF00390 Malic enzyme, N-terminal domain ND439_05560 PF03466 LysR substrate binding domain ND439_05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_05565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND439_05565 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND439_05570 PF04172 LrgB-like family ND439_05575 PF03788 LrgA family ND439_05585 PF09334 tRNA synthetases class I (M) ND439_05585 PF01588 Putative tRNA binding domain ND439_05590 PF10609 NUBPL iron-transfer P-loop NTPase ND439_05595 PF00485 Phosphoribulokinase / Uridine kinase family ND439_05600 PF00692 dUTPase ND439_05605 PF05170 AsmA family ND439_05610 PF03606 C4-dicarboxylate anaerobic carrier ND439_05615 PF00571 CBS domain ND439_05615 PF03471 Transporter associated domain ND439_05615 PF03741 Integral membrane protein TerC family ND439_05620 PF00483 Nucleotidyl transferase ND439_05625 PF00483 Nucleotidyl transferase ND439_05630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND439_05630 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND439_05640 PF01502 Phosphoribosyl-AMP cyclohydrolase ND439_05640 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND439_05645 PF00977 Histidine biosynthesis protein ND439_05650 PF00977 Histidine biosynthesis protein ND439_05655 PF00117 Glutamine amidotransferase class-I ND439_05660 PF00475 Imidazoleglycerol-phosphate dehydratase ND439_05665 PF00155 Aminotransferase class I and II ND439_05670 PF00815 Histidinol dehydrogenase ND439_05675 PF01634 ATP phosphoribosyltransferase ND439_05675 PF08029 HisG, C-terminal domain ND439_05685 PF01370 NAD dependent epimerase/dehydratase family ND439_05690 PF00043 Glutathione S-transferase, C-terminal domain ND439_05690 PF13417 Glutathione S-transferase, N-terminal domain ND439_05705 PF01053 Cys/Met metabolism PLP-dependent enzyme ND439_05710 PF00291 Pyridoxal-phosphate dependent enzyme ND439_05710 PF00571 CBS domain ND439_05715 PF07943 Penicillin-binding protein 5, C-terminal domain ND439_05715 PF00768 D-alanyl-D-alanine carboxypeptidase ND439_05720 PF03313 Serine dehydratase alpha chain ND439_05720 PF03315 Serine dehydratase beta chain ND439_05730 PF00455 DeoR C terminal sensor domain ND439_05730 PF08220 DeoR-like helix-turn-helix domain ND439_05735 PF01791 DeoC/LacD family aldolase ND439_05740 PF01569 PAP2 superfamily ND439_05750 PF06826 Predicted Permease Membrane Region ND439_05750 PF02080 TrkA-C domain ND439_05755 PF00462 Glutaredoxin ND439_05760 PF07214 Protein of unknown function (DUF1418) ND439_05765 PF10722 Putative bacterial sensory transduction regulator ND439_05770 PF13416 Bacterial extracellular solute-binding protein ND439_05775 PF08402 TOBE domain ND439_05775 PF00005 ABC transporter ND439_05780 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05785 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05790 PF10767 Protein of unknown function (DUF2593) ND439_05795 PF05958 tRNA (Uracil-5-)-methyltransferase ND439_05800 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_05805 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05810 PF00528 Binding-protein-dependent transport system inner membrane component ND439_05815 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_05820 PF00005 ABC transporter ND439_05825 PF12883 Protein of unknown function (DUF3828) ND439_05830 PF01906 Putative heavy-metal-binding ND439_05835 PF01370 NAD dependent epimerase/dehydratase family ND439_05840 PF11066 Protein of unknown function (DUF2867) ND439_05840 PF13460 NAD(P)H-binding ND439_05845 PF01212 Beta-eliminating lyase ND439_05850 PF00175 Oxidoreductase NAD-binding domain ND439_05850 PF00970 Oxidoreductase FAD-binding domain ND439_05850 PF00111 2Fe-2S iron-sulfur cluster binding domain ND439_05855 PF03063 Prismane/CO dehydrogenase family ND439_05860 PF03956 Lysine exporter LysO ND439_05865 PF11398 Protein of unknown function (DUF2813) ND439_05870 PF04393 Protein of unknown function (DUF535) ND439_05875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND439_05880 PF00005 ABC transporter ND439_05880 PF02687 FtsX-like permease family ND439_05880 PF12704 MacB-like periplasmic core domain ND439_05885 PF00313 'Cold-shock' DNA-binding domain ND439_05890 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND439_05895 PF10431 C-terminal, D2-small domain, of ClpB protein ND439_05895 PF17871 AAA lid domain ND439_05895 PF02861 Clp amino terminal domain, pathogenicity island component ND439_05895 PF00004 ATPase family associated with various cellular activities (AAA) ND439_05895 PF07724 AAA domain (Cdc48 subfamily) ND439_05900 PF01176 Translation initiation factor 1A / IF-1 ND439_05905 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND439_05910 PF00005 ABC transporter ND439_05910 PF00664 ABC transporter transmembrane region ND439_05915 PF00664 ABC transporter transmembrane region ND439_05915 PF00005 ABC transporter ND439_05920 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_05925 PF01037 Lrp/AsnC ligand binding domain ND439_05930 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND439_05930 PF17854 FtsK alpha domain ND439_05930 PF01580 FtsK/SpoIIIE family ND439_05930 PF09397 Ftsk gamma domain ND439_05935 PF03548 Outer membrane lipoprotein carrier protein LolA ND439_05940 PF00004 ATPase family associated with various cellular activities (AAA) ND439_05940 PF16193 AAA C-terminal domain ND439_05940 PF12002 MgsA AAA+ ATPase C terminal ND439_05945 PF02403 Seryl-tRNA synthetase N-terminal domain ND439_05945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND439_05950 PF07690 Major Facilitator Superfamily ND439_05955 PF04055 Radical SAM superfamily ND439_05960 PF01228 Glycine radical ND439_05960 PF02901 Pyruvate formate lyase-like ND439_05965 PF01226 Formate/nitrite transporter ND439_05970 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND439_05970 PF18381 YcaO cyclodehydratase C-terminal domain ND439_05975 PF00710 Asparaginase, N-terminal ND439_05975 PF17763 Glutaminase/Asparaginase C-terminal domain ND439_05980 PF00266 Aminotransferase class-V ND439_05985 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND439_05990 PF02224 Cytidylate kinase ND439_05995 PF00575 S1 RNA binding domain ND439_06000 PF00216 Bacterial DNA-binding protein ND439_06005 PF03772 Competence protein ND439_06005 PF00753 Metallo-beta-lactamase superfamily ND439_06010 PF00664 ABC transporter transmembrane region ND439_06010 PF00005 ABC transporter ND439_06015 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND439_06020 PF07063 Domain of unknown function (DUF1338) ND439_06025 PF00313 'Cold-shock' DNA-binding domain ND439_06030 PF00313 'Cold-shock' DNA-binding domain ND439_06035 PF03966 Trm112p-like protein ND439_06040 PF02348 Cytidylyltransferase ND439_06045 PF01636 Phosphotransferase enzyme family ND439_06050 PF02698 DUF218 domain ND439_06055 PF13847 Methyltransferase domain ND439_06060 PF17193 MukF C-terminal domain ND439_06060 PF17192 MukF middle domain ND439_06060 PF03882 MukF winged-helix domain ND439_06065 PF04288 MukE-like family ND439_06070 PF04310 MukB N-terminal ND439_06070 PF16330 MukB hinge domain ND439_06075 PF01471 Putative peptidoglycan binding domain ND439_06075 PF03734 L,D-transpeptidase catalytic domain ND439_06080 PF05951 Bacterial protein of unknown function (DUF882) ND439_06085 PF00753 Metallo-beta-lactamase superfamily ND439_06090 PF00155 Aminotransferase class I and II ND439_06095 PF00267 Gram-negative porin ND439_06100 PF00152 tRNA synthetases class II (D, K and N) ND439_06100 PF01336 OB-fold nucleic acid binding domain ND439_06105 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND439_06105 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND439_06110 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND439_06110 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND439_06110 PF01433 Peptidase family M1 domain ND439_06115 PF01180 Dihydroorotate dehydrogenase ND439_06120 PF07126 Cell-division protein ZapC ND439_06125 PF03476 MOSC N-terminal beta barrel domain ND439_06125 PF00111 2Fe-2S iron-sulfur cluster binding domain ND439_06125 PF03473 MOSC domain ND439_06130 PF01170 Putative RNA methylase family UPF0020 ND439_06130 PF02926 THUMP domain ND439_06130 PF10672 S-adenosylmethionine-dependent methyltransferase ND439_06135 PF00005 ABC transporter ND439_06135 PF12848 ABC transporter ND439_06135 PF16326 ABC transporter C-terminal domain ND439_06140 PF04403 Paraquat-inducible protein A ND439_06145 PF02470 MlaD protein ND439_06150 PF03886 ABC-type transport auxiliary lipoprotein component ND439_06155 PF04957 Ribosome modulation factor ND439_06160 PF07977 FabA-like domain ND439_06165 PF13654 AAA domain ND439_06165 PF05362 Lon protease (S16) C-terminal proteolytic domain ND439_06170 PF06303 MatP N-terminal domain ND439_06170 PF17414 MatP C-terminal ribbon-helix-helix domain ND439_06175 PF01389 OmpA-like transmembrane domain ND439_06175 PF00691 OmpA family ND439_06180 PF03846 Cell division inhibitor SulA ND439_06185 PF04994 TfoX C-terminal domain ND439_06185 PF04993 TfoX N-terminal domain ND439_06190 PF12805 FUSC-like inner membrane protein yccS ND439_06195 PF03733 Inner membrane component domain ND439_06200 PF12462 DNA helicase IV / RNA helicase N terminal ND439_06200 PF00580 UvrD/REP helicase N-terminal domain ND439_06200 PF13361 UvrD-like helicase C-terminal domain ND439_06205 PF02142 MGS-like domain ND439_06210 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND439_06215 PF13380 CoA binding domain ND439_06220 PF08755 Hemimethylated DNA-binding protein YccV like ND439_06225 PF17785 PUA-like domain ND439_06225 PF10672 S-adenosylmethionine-dependent methyltransferase ND439_06235 PF04358 DsrC like protein ND439_06245 PF00484 Carbonic anhydrase ND439_06250 PF00999 Sodium/hydrogen exchanger family ND439_06250 PF02080 TrkA-C domain ND439_06250 PF03471 Transporter associated domain ND439_06260 PF01757 Acyltransferase family ND439_06265 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND439_06270 PF00535 Glycosyl transferase family 2 ND439_06275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND439_06280 PF00854 POT family ND439_06290 PF03279 Bacterial lipid A biosynthesis acyltransferase ND439_06295 PF17773 UPF0176 acylphosphatase like domain ND439_06295 PF12368 Rhodanase C-terminal ND439_06295 PF00581 Rhodanese-like domain ND439_06300 PF01594 AI-2E family transporter ND439_06305 PF00196 Bacterial regulatory proteins, luxR family ND439_06310 PF01266 FAD dependent oxidoreductase ND439_06315 PF13991 BssS protein family ND439_06320 PF06183 DinI-like family ND439_06325 PF01979 Amidohydrolase family ND439_06330 PF03992 Antibiotic biosynthesis monooxygenase ND439_06340 PF10150 Ribonuclease E/G family ND439_06340 PF00575 S1 RNA binding domain ND439_06340 PF12111 Polyribonucleotide phosphorylase C terminal ND439_06345 PF00849 RNA pseudouridylate synthase ND439_06345 PF01479 S4 domain ND439_06350 PF02545 Maf-like protein ND439_06355 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND439_06360 PF01783 Ribosomal L32p protein family ND439_06365 PF02504 Fatty acid synthesis protein ND439_06370 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND439_06370 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND439_06375 PF00698 Acyl transferase domain ND439_06385 PF00550 Phosphopantetheine attachment site ND439_06390 PF02801 Beta-ketoacyl synthase, C-terminal domain ND439_06390 PF00109 Beta-ketoacyl synthase, N-terminal domain ND439_06395 PF01063 Amino-transferase class IV ND439_06400 PF02618 YceG-like family ND439_06405 PF02223 Thymidylate kinase ND439_06410 PF09115 DNA polymerase III, delta subunit, C terminal ND439_06415 PF01026 TatD related DNase ND439_06420 PF00367 phosphotransferase system, EIIB ND439_06420 PF02378 Phosphotransferase system, EIIC ND439_06425 PF01230 HIT domain ND439_06430 PF07233 Protein of unknown function (DUF1425) ND439_06435 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND439_06435 PF13036 Peptidoglycan-synthase activator LpoB ND439_06440 PF01636 Phosphotransferase enzyme family ND439_06445 PF00933 Glycosyl hydrolase family 3 N terminal domain ND439_06450 PF05728 Uncharacterised protein family (UPF0227) ND439_06455 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_06460 PF05433 Glycine zipper 2TM domain ND439_06465 PF02559 CarD-like/TRCF domain ND439_06465 PF00270 DEAD/DEAH box helicase ND439_06465 PF00271 Helicase conserved C-terminal domain ND439_06465 PF17757 UvrB interaction domain ND439_06465 PF03461 TRCF domain ND439_06470 PF12704 MacB-like periplasmic core domain ND439_06470 PF02687 FtsX-like permease family ND439_06475 PF00005 ABC transporter ND439_06480 PF12704 MacB-like periplasmic core domain ND439_06480 PF02687 FtsX-like permease family ND439_06485 PF00480 ROK family ND439_06490 PF02146 Sir2 family ND439_06495 PF07687 Peptidase dimerisation domain ND439_06495 PF01546 Peptidase family M20/M25/M40 ND439_06500 PF08007 Cupin superfamily protein ND439_06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_06505 PF08918 PhoQ Sensor ND439_06510 PF00072 Response regulator receiver domain ND439_06510 PF00486 Transcriptional regulatory protein, C terminal ND439_06520 PF08328 Adenylosuccinate lyase C-terminal ND439_06520 PF00206 Lyase ND439_06525 PF04356 Protein of unknown function (DUF489) ND439_06535 PF00293 NUDIX domain ND439_06540 PF00849 RNA pseudouridylate synthase ND439_06545 PF00180 Isocitrate/isopropylmalate dehydrogenase ND439_06550 PF03472 Autoinducer binding domain ND439_06550 PF00196 Bacterial regulatory proteins, luxR family ND439_06555 PF00765 Autoinducer synthase ND439_06560 PF00232 Glycosyl hydrolase family 1 ND439_06570 PF01432 Peptidase family M3 ND439_06580 PF03390 2-hydroxycarboxylate transporter family ND439_06585 PF00072 Response regulator receiver domain ND439_06590 PF17203 Single cache domain 3 ND439_06590 PF00989 PAS fold ND439_06590 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND439_06590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_06595 PF00939 Sodium:sulfate symporter transmembrane region ND439_06600 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND439_06600 PF00413 Matrixin ND439_06600 PF08548 Peptidase M10 serralysin C terminal ND439_06605 PF02974 Protease inhibitor Inh ND439_06610 PF00664 ABC transporter transmembrane region ND439_06610 PF00005 ABC transporter ND439_06615 PF00529 HlyD membrane-fusion protein of T1SS ND439_06620 PF02321 Outer membrane efflux protein ND439_06635 PF12833 Helix-turn-helix domain ND439_06635 PF02311 AraC-like ligand binding domain ND439_06640 PF02562 PhoH-like protein ND439_06645 PF01699 Sodium/calcium exchanger protein ND439_06650 PF04954 Siderophore-interacting protein ND439_06650 PF08021 Siderophore-interacting FAD-binding domain ND439_06655 PF00672 HAMP domain ND439_06655 PF07730 Histidine kinase ND439_06655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_06655 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND439_06665 PF02322 Cytochrome bd terminal oxidase subunit II ND439_06670 PF01654 Cytochrome bd terminal oxidase subunit I ND439_06675 PF00155 Aminotransferase class I and II ND439_06675 PF00392 Bacterial regulatory proteins, gntR family ND439_06680 PF00202 Aminotransferase class-III ND439_06685 PF04958 Arginine N-succinyltransferase beta subunit ND439_06690 PF00171 Aldehyde dehydrogenase family ND439_06695 PF04996 Succinylarginine dihydrolase ND439_06700 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ND439_06705 PF00267 Gram-negative porin ND439_06715 PF01979 Amidohydrolase family ND439_06720 PF00392 Bacterial regulatory proteins, gntR family ND439_06720 PF07702 UTRA domain ND439_06725 PF01979 Amidohydrolase family ND439_06730 PF05962 HutD ND439_06735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_06735 PF03466 LysR substrate binding domain ND439_06745 PF03824 High-affinity nickel-transport protein ND439_06750 PF01300 Telomere recombination ND439_06750 PF07503 HypF finger ND439_06750 PF00708 Acylphosphatase ND439_06750 PF17788 HypF Kae1-like domain ND439_06755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND439_06755 PF00384 Molybdopterin oxidoreductase ND439_06755 PF01568 Molydopterin dinucleotide binding domain ND439_06760 PF13247 4Fe-4S dicluster domain ND439_06760 PF12800 4Fe-4S binding domain ND439_06765 PF01750 Hydrogenase maturation protease ND439_06770 PF07450 Formate hydrogenlyase maturation protein HycH ND439_06775 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND439_06780 PF12838 4Fe-4S dicluster domain ND439_06785 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND439_06785 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND439_06785 PF00374 Nickel-dependent hydrogenase ND439_06790 PF00146 NADH dehydrogenase ND439_06795 PF00361 Proton-conducting membrane transporter ND439_06800 PF13247 4Fe-4S dicluster domain ND439_06805 PF11046 Transcriptional repressor of hyc and hyp operons ND439_06810 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND439_06815 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND439_06820 PF01455 HupF/HypC family ND439_06825 PF01924 Hydrogenase formation hypA family ND439_06830 PF00586 AIR synthase related protein, N-terminal domain ND439_06830 PF02769 AIR synthase related protein, C-terminal domain ND439_06835 PF01590 GAF domain ND439_06835 PF02954 Bacterial regulatory protein, Fis family ND439_06835 PF00158 Sigma-54 interaction domain ND439_06850 PF06071 Protein of unknown function (DUF933) ND439_06850 PF01926 50S ribosome-binding GTPase ND439_06860 PF01195 Peptidyl-tRNA hydrolase ND439_06865 PF10762 Protein of unknown function (DUF2583) ND439_06870 PF14572 Phosphoribosyl synthetase-associated domain ND439_06870 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND439_06875 PF08544 GHMP kinases C terminal ND439_06875 PF00288 GHMP kinases N terminal domain ND439_06880 PF03550 Outer membrane lipoprotein LolB ND439_06885 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND439_06885 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND439_06885 PF01488 Shikimate / quinate 5-dehydrogenase ND439_06890 PF03462 PCRF domain ND439_06890 PF00472 RF-1 domain ND439_06895 PF17827 PrmC N-terminal domain ND439_06895 PF13847 Methyltransferase domain ND439_06900 PF04247 Invasion gene expression up-regulator, SirB ND439_06905 PF13369 Transglutaminase-like superfamily ND439_06910 PF00793 DAHP synthetase I family ND439_06915 PF00916 Sulfate permease family ND439_06915 PF01740 STAS domain ND439_06920 PF00990 Diguanylate cyclase, GGDEF domain ND439_06930 PF03009 Glycerophosphoryl diester phosphodiesterase family ND439_06940 PF00854 POT family ND439_06945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND439_06950 PF02811 PHP domain ND439_06955 PF02613 Nitrate reductase delta subunit ND439_06960 PF07273 Protein of unknown function (DUF1439) ND439_06970 PF07690 Major Facilitator Superfamily ND439_06975 PF13302 Acetyltransferase (GNAT) domain ND439_06980 PF04337 Protein of unknown function, DUF480 ND439_06985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND439_06990 PF03023 Lipid II flippase MurJ ND439_06995 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND439_06995 PF08479 POTRA domain, ShlB-type ND439_06995 PF17287 POTRA domain ND439_07000 PF05860 haemagglutination activity domain ND439_07000 PF13332 Hemagglutinin repeat ND439_07010 PF03485 Arginyl tRNA synthetase N terminal domain ND439_07010 PF05746 DALR anticodon binding domain ND439_07010 PF00750 tRNA synthetases class I (R) ND439_07015 PF06185 YecM protein ND439_07020 PF03932 CutC family ND439_07025 PF08003 Protein of unknown function (DUF1698) ND439_07030 PF13649 Methyltransferase domain ND439_07035 PF01124 MAPEG family ND439_07040 PF01904 Protein of unknown function DUF72 ND439_07050 PF02938 GAD domain ND439_07050 PF00152 tRNA synthetases class II (D, K and N) ND439_07050 PF01336 OB-fold nucleic acid binding domain ND439_07055 PF00293 NUDIX domain ND439_07060 PF01709 Transcriptional regulator ND439_07065 PF02075 Crossover junction endodeoxyribonuclease RuvC ND439_07070 PF07499 RuvA, C-terminal domain ND439_07070 PF01330 RuvA N terminal domain ND439_07075 PF17864 RuvB AAA lid domain ND439_07075 PF05491 RuvB C-terminal winged helix domain ND439_07075 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND439_07080 PF00854 POT family ND439_07085 PF00950 ABC 3 transport family ND439_07090 PF00005 ABC transporter ND439_07095 PF01297 Zinc-uptake complex component A periplasmic ND439_07100 PF01476 LysM domain ND439_07100 PF08525 Opacity-associated protein A N-terminal motif ND439_07100 PF01551 Peptidase family M23 ND439_07105 PF03279 Bacterial lipid A biosynthesis acyltransferase ND439_07110 PF02887 Pyruvate kinase, alpha/beta domain ND439_07110 PF00224 Pyruvate kinase, barrel domain ND439_07115 PF01380 SIS domain ND439_07115 PF01418 Helix-turn-helix domain, rpiR family ND439_07120 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND439_07120 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND439_07125 PF01081 KDPG and KHG aldolase ND439_07130 PF00893 Small Multidrug Resistance protein ND439_07135 PF00893 Small Multidrug Resistance protein ND439_07140 PF01042 Endoribonuclease L-PSP ND439_07145 PF13307 Helicase C-terminal domain ND439_07145 PF04851 Type III restriction enzyme, res subunit ND439_07150 PF00814 Glycoprotease family ND439_07155 PF03843 Outer membrane lipoprotein Slp family ND439_07160 PF00501 AMP-binding enzyme ND439_07160 PF13193 AMP-binding enzyme C-terminal domain ND439_07165 PF00570 HRDC domain ND439_07165 PF01612 3'-5' exonuclease ND439_07170 PF03776 Septum formation topological specificity factor MinE ND439_07175 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND439_07180 PF03775 Septum formation inhibitor MinC, C-terminal domain ND439_07180 PF05209 Septum formation inhibitor MinC, N-terminal domain ND439_07185 PF05166 YcgL domain ND439_07190 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND439_07195 PF03692 Putative zinc- or iron-chelating domain ND439_07210 PF02600 Disulfide bond formation protein DsbB ND439_07215 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND439_07220 PF07840 FadR C-terminal domain ND439_07220 PF00392 Bacterial regulatory proteins, gntR family ND439_07225 PF04293 SpoVR like protein ND439_07230 PF01266 FAD dependent oxidoreductase ND439_07235 PF00842 Alanine racemase, C-terminal domain ND439_07235 PF01168 Alanine racemase, N-terminal domain ND439_07240 PF07690 Major Facilitator Superfamily ND439_07250 PF00990 Diguanylate cyclase, GGDEF domain ND439_07250 PF13426 PAS domain ND439_07250 PF00563 EAL domain ND439_07255 PF03466 LysR substrate binding domain ND439_07255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_07260 PF03306 Alpha-acetolactate decarboxylase ND439_07265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND439_07265 PF00205 Thiamine pyrophosphate enzyme, central domain ND439_07265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND439_07270 PF04285 Protein of unknown function (DUF444) ND439_07275 PF08298 PrkA AAA domain ND439_07275 PF06798 PrkA serine protein kinase C-terminal domain ND439_07285 PF06629 MltA-interacting protein MipA ND439_07290 PF00884 Sulfatase ND439_07295 PF01263 Aldose 1-epimerase ND439_07300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND439_07300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND439_07305 PF01641 SelR domain ND439_07310 PF07023 Protein of unknown function (DUF1315) ND439_07315 PF00857 Isochorismatase family ND439_07320 PF17763 Glutaminase/Asparaginase C-terminal domain ND439_07320 PF00710 Asparaginase, N-terminal ND439_07325 PF01343 Peptidase family S49 ND439_07330 PF00881 Nitroreductase family ND439_07335 PF00586 AIR synthase related protein, N-terminal domain ND439_07335 PF02769 AIR synthase related protein, C-terminal domain ND439_07340 PF01131 DNA topoisomerase ND439_07340 PF01751 Toprim domain ND439_07345 PF07383 Protein of unknown function (DUF1496) ND439_07350 PF00293 NUDIX domain ND439_07355 PF03372 Endonuclease/Exonuclease/phosphatase family ND439_07365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_07365 PF03466 LysR substrate binding domain ND439_07390 PF01842 ACT domain ND439_07390 PF00551 Formyl transferase ND439_07395 PF02810 SEC-C motif ND439_07400 PF01734 Patatin-like phospholipase ND439_07405 PF00072 Response regulator receiver domain ND439_07410 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND439_07410 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND439_07410 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND439_07415 PF00816 H-NS histone family ND439_07420 PF00265 Thymidine kinase ND439_07425 PF00171 Aldehyde dehydrogenase family ND439_07425 PF00465 Iron-containing alcohol dehydrogenase ND439_07435 PF01914 MarC family integral membrane protein ND439_07440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND439_07445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND439_07450 PF00528 Binding-protein-dependent transport system inner membrane component ND439_07455 PF00528 Binding-protein-dependent transport system inner membrane component ND439_07455 PF12911 N-terminal TM domain of oligopeptide transport permease C ND439_07460 PF00005 ABC transporter ND439_07460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND439_07465 PF00005 ABC transporter ND439_07465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND439_07470 PF04269 Protein of unknown function, DUF440 ND439_07475 PF13396 Phospholipase_D-nuclease N-terminal ND439_07475 PF13091 PLD-like domain ND439_07495 PF03795 YCII-related domain ND439_07510 PF00486 Transcriptional regulatory protein, C terminal ND439_07520 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND439_07520 PF02753 Pili assembly chaperone PapD, C-terminal domain ND439_07525 PF13953 PapC C-terminal domain ND439_07525 PF13954 PapC N-terminal domain ND439_07525 PF00577 Outer membrane usher protein ND439_07545 PF03544 Gram-negative bacterial TonB protein C-terminal ND439_07550 PF03061 Thioesterase superfamily ND439_07555 PF04279 Intracellular septation protein A ND439_07560 PF00916 Sulfate permease family ND439_07560 PF01740 STAS domain ND439_07570 PF03692 Putative zinc- or iron-chelating domain ND439_07575 PF03922 OmpW family ND439_07585 PF00290 Tryptophan synthase alpha chain ND439_07590 PF00291 Pyridoxal-phosphate dependent enzyme ND439_07595 PF00218 Indole-3-glycerol phosphate synthase ND439_07595 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND439_07600 PF02885 Glycosyl transferase family, helical bundle domain ND439_07600 PF00591 Glycosyl transferase family, a/b domain ND439_07605 PF00117 Glutamine amidotransferase class-I ND439_07610 PF04715 Anthranilate synthase component I, N terminal region ND439_07610 PF00425 chorismate binding enzyme ND439_07615 PF02811 PHP domain ND439_07620 PF01300 Telomere recombination ND439_07625 PF01479 S4 domain ND439_07625 PF00849 RNA pseudouridylate synthase ND439_07630 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND439_07635 PF00106 short chain dehydrogenase ND439_07640 PF08496 Peptidase family S49 N-terminal ND439_07640 PF01343 Peptidase family S49 ND439_07645 PF10692 Protein of unknown function (DUF2498) ND439_07650 PF01751 Toprim domain ND439_07650 PF01396 Topoisomerase DNA binding C4 zinc finger ND439_07650 PF01131 DNA topoisomerase ND439_07650 PF08272 Topoisomerase I zinc-ribbon-like ND439_07655 PF03466 LysR substrate binding domain ND439_07655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_07675 PF00694 Aconitase C-terminal domain ND439_07675 PF00330 Aconitase family (aconitate hydratase) ND439_07680 PF00925 GTP cyclohydrolase II ND439_07685 PF01569 PAP2 superfamily ND439_07690 PF06305 Lipopolysaccharide assembly protein A domain ND439_07695 PF18073 Rubredoxin metal binding domain ND439_07730 PF00535 Glycosyl transferase family 2 ND439_07735 PF00529 HlyD membrane-fusion protein of T1SS ND439_07735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND439_07740 PF00664 ABC transporter transmembrane region ND439_07740 PF00005 ABC transporter ND439_07740 PF03412 Peptidase C39 family ND439_07785 PF02899 Phage integrase, N-terminal SAM-like domain ND439_07785 PF00589 Phage integrase family ND439_07790 PF07338 Protein of unknown function (DUF1471) ND439_07795 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND439_07800 PF01253 Translation initiation factor SUI1 ND439_07805 PF05433 Glycine zipper 2TM domain ND439_07810 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND439_07815 PF00990 Diguanylate cyclase, GGDEF domain ND439_07815 PF08447 PAS fold ND439_07815 PF08448 PAS fold ND439_07815 PF13426 PAS domain ND439_07815 PF00563 EAL domain ND439_07815 PF05231 MASE1 ND439_07820 PF08206 Ribonuclease B OB domain ND439_07820 PF00773 RNB domain ND439_07820 PF00575 S1 RNA binding domain ND439_07825 PF10576 Iron-sulfur binding domain of endonuclease III ND439_07825 PF00633 Helix-hairpin-helix motif ND439_07825 PF00730 HhH-GPD superfamily base excision DNA repair protein ND439_07830 PF02508 Rnf-Nqr subunit, membrane protein ND439_07835 PF04205 FMN-binding domain ND439_07840 PF03116 NQR2, RnfD, RnfE family ND439_07845 PF12833 Helix-turn-helix domain ND439_07845 PF06445 GyrI-like small molecule binding domain ND439_07850 PF13237 4Fe-4S dicluster domain ND439_07850 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND439_07850 PF13375 RnfC Barrel sandwich hybrid domain ND439_07850 PF10531 SLBB domain ND439_07855 PF04060 Putative Fe-S cluster ND439_07860 PF02508 Rnf-Nqr subunit, membrane protein ND439_07865 PF10754 Protein of unknown function (DUF2569) ND439_07870 PF01268 Formate--tetrahydrofolate ligase ND439_07875 PF09313 Domain of unknown function (DUF1971) ND439_07875 PF03848 Tellurite resistance protein TehB ND439_07880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND439_07880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND439_07885 PF13593 SBF-like CPA transporter family (DUF4137) ND439_07890 PF00962 Adenosine/AMP deaminase ND439_07910 PF06097 Bacterial protein of unknown function (DUF945) ND439_07915 PF01238 Phosphomannose isomerase type I ND439_07920 PF10415 Fumarase C C-terminus ND439_07920 PF00206 Lyase ND439_07925 PF05472 DNA replication terminus site-binding protein (Ter protein) ND439_07940 PF00480 ROK family ND439_07950 PF00654 Voltage gated chloride channel ND439_07955 PF06649 Protein of unknown function (DUF1161) ND439_07960 PF06932 Protein of unknown function (DUF1283) ND439_07965 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND439_07970 PF00106 short chain dehydrogenase ND439_07975 PF01510 N-acetylmuramoyl-L-alanine amidase ND439_07990 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND439_07990 PF01048 Phosphorylase superfamily ND439_08030 PF13419 Haloacid dehalogenase-like hydrolase ND439_08040 PF06445 GyrI-like small molecule binding domain ND439_08045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND439_08045 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND439_08050 PF00027 Cyclic nucleotide-binding domain ND439_08050 PF13545 Crp-like helix-turn-helix domain ND439_08055 PF00582 Universal stress protein family ND439_08065 PF00455 DeoR C terminal sensor domain ND439_08065 PF08220 DeoR-like helix-turn-helix domain ND439_08070 PF03611 PTS system sugar-specific permease component ND439_08075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND439_08080 PF00596 Class II Aldolase and Adducin N-terminal domain ND439_08085 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND439_08090 PF01261 Xylose isomerase-like TIM barrel ND439_08095 PF02233 NAD(P) transhydrogenase beta subunit ND439_08100 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND439_08100 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND439_08100 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND439_08105 PF07338 Protein of unknown function (DUF1471) ND439_08110 PF13520 Amino acid permease ND439_08120 PF00072 Response regulator receiver domain ND439_08120 PF00486 Transcriptional regulatory protein, C terminal ND439_08125 PF00512 His Kinase A (phospho-acceptor) domain ND439_08125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_08125 PF00672 HAMP domain ND439_08130 PF00080 Copper/zinc superoxide dismutase (SODC) ND439_08135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND439_08140 PF12833 Helix-turn-helix domain ND439_08145 PF01161 Phosphatidylethanolamine-binding protein ND439_08155 PF00089 Trypsin ND439_08160 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND439_08160 PF00271 Helicase conserved C-terminal domain ND439_08160 PF04408 Helicase associated domain (HA2) ND439_08160 PF11898 Domain of unknown function (DUF3418) ND439_08160 PF00270 DEAD/DEAH box helicase ND439_08165 PF02525 Flavodoxin-like fold ND439_08170 PF07027 Protein of unknown function (DUF1318) ND439_08175 PF13617 YnbE-like lipoprotein ND439_08185 PF11739 Dicarboxylate transport ND439_08190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND439_08190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND439_08195 PF03724 META domain ND439_08200 PF03891 Domain of unknown function (DUF333) ND439_08205 PF02308 MgtC family ND439_08210 PF00893 Small Multidrug Resistance protein ND439_08215 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND439_08215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND439_08215 PF10371 Domain of unknown function ND439_08215 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND439_08215 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND439_08220 PF01171 PP-loop family ND439_08225 PF01544 CorA-like Mg2+ transporter protein ND439_08230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND439_08235 PF00246 Zinc carboxypeptidase ND439_08240 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND439_08240 PF13378 Enolase C-terminal domain-like ND439_08245 PF08534 Redoxin ND439_08250 PF18024 Helix-turn-helix domain ND439_08250 PF00158 Sigma-54 interaction domain ND439_08255 PF09722 Protein of unknown function (DUF2384) ND439_08260 PF08808 RES domain ND439_08265 PF05128 Domain of unknown function (DUF697) ND439_08270 PF04317 YcjX-like family, DUF463 ND439_08275 PF04024 PspC domain ND439_08280 PF06667 Phage shock protein B ND439_08285 PF04012 PspA/IM30 family ND439_08290 PF00158 Sigma-54 interaction domain ND439_08290 PF02954 Bacterial regulatory protein, Fis family ND439_08300 PF02917 Pertussis toxin, subunit 1 ND439_08305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND439_08310 PF00528 Binding-protein-dependent transport system inner membrane component ND439_08315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND439_08315 PF00528 Binding-protein-dependent transport system inner membrane component ND439_08320 PF00005 ABC transporter ND439_08320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND439_08325 PF00005 ABC transporter ND439_08335 PF00854 POT family ND439_08345 PF01556 DnaJ C terminal domain ND439_08345 PF00226 DnaJ domain ND439_08355 PF04893 Yip1 domain ND439_08365 PF11656 YjbD family (DUF3811) ND439_08370 PF00043 Glutathione S-transferase, C-terminal domain ND439_08370 PF02798 Glutathione S-transferase, N-terminal domain ND439_08375 PF08543 Phosphomethylpyrimidine kinase ND439_08380 PF00579 tRNA synthetases class I (W and Y) ND439_08380 PF01479 S4 domain ND439_08385 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND439_08385 PF01243 Pyridoxamine 5'-phosphate oxidase ND439_08390 PF03702 Anhydro-N-acetylmuramic acid kinase ND439_08395 PF05433 Glycine zipper 2TM domain ND439_08400 PF01047 MarR family ND439_08410 PF00248 Aldo/keto reductase family ND439_08415 PF06945 Protein of unknown function (DUF1289) ND439_08420 PF00884 Sulfatase ND439_08420 PF08019 Phosphoethanolamine transferase EptA/EptB ND439_08425 PF16925 Tetracyclin repressor-like, C-terminal domain ND439_08425 PF00440 Bacterial regulatory proteins, tetR family ND439_08430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND439_08435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND439_08440 PF00929 Exonuclease ND439_08445 PF00462 Glutaredoxin ND439_08450 PF00877 NlpC/P60 family ND439_08455 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND439_08455 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND439_08465 PF00356 Bacterial regulatory proteins, lacI family ND439_08470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_08470 PF03466 LysR substrate binding domain ND439_08475 PF07690 Major Facilitator Superfamily ND439_08485 PF00677 Lumazine binding domain ND439_08490 PF01554 MatE ND439_08510 PF00224 Pyruvate kinase, barrel domain ND439_08510 PF02887 Pyruvate kinase, alpha/beta domain ND439_08515 PF04728 Lipoprotein leucine-zipper ND439_08520 PF17969 L,D-transpeptidase C-terminal domain ND439_08520 PF01476 LysM domain ND439_08520 PF03734 L,D-transpeptidase catalytic domain ND439_08525 PF02657 Fe-S metabolism associated domain ND439_08530 PF00266 Aminotransferase class-V ND439_08535 PF01458 Uncharacterized protein family (UPF0051) ND439_08540 PF00005 ABC transporter ND439_08545 PF01458 Uncharacterized protein family (UPF0051) ND439_08550 PF01521 Iron-sulphur cluster biosynthesis ND439_08555 PF03061 Thioesterase superfamily ND439_08560 PF02913 FAD linked oxidases, C-terminal domain ND439_08560 PF01565 FAD binding domain ND439_08560 PF13183 4Fe-4S dicluster domain ND439_08565 PF01594 AI-2E family transporter ND439_08575 PF00391 PEP-utilising enzyme, mobile domain ND439_08575 PF02896 PEP-utilising enzyme, TIM barrel domain ND439_08575 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND439_08580 PF03618 Kinase/pyrophosphorylase ND439_08585 PF00793 DAHP synthetase I family ND439_08590 PF10636 Hemin uptake protein hemP ND439_08595 PF00593 TonB dependent receptor ND439_08595 PF07715 TonB-dependent Receptor Plug Domain ND439_08600 PF05171 Haemin-degrading HemS.ChuX domain ND439_08605 PF01497 Periplasmic binding protein ND439_08610 PF01032 FecCD transport family ND439_08615 PF00005 ABC transporter ND439_08620 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND439_08625 PF03099 Biotin/lipoate A/B protein ligase family ND439_08625 PF10437 Bacterial lipoate protein ligase C-terminus ND439_08630 PF00877 NlpC/P60 family ND439_08640 PF00892 EamA-like transporter family ND439_08645 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND439_08650 PF01522 Polysaccharide deacetylase ND439_08655 PF01370 NAD dependent epimerase/dehydratase family ND439_08655 PF02911 Formyl transferase, C-terminal domain ND439_08655 PF00551 Formyl transferase ND439_08660 PF00535 Glycosyl transferase family 2 ND439_08665 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND439_08670 PF00005 ABC transporter ND439_08675 PF01032 FecCD transport family ND439_08680 PF00589 Phage integrase family ND439_08680 PF02899 Phage integrase, N-terminal SAM-like domain ND439_08710 PF04606 Ogr/Delta-like zinc finger ND439_08720 PF00216 Bacterial DNA-binding protein ND439_08725 PF01588 Putative tRNA binding domain ND439_08725 PF03483 B3/4 domain ND439_08725 PF03484 tRNA synthetase B5 domain ND439_08725 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND439_08725 PF03147 Ferredoxin-fold anticodon binding domain ND439_08730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND439_08730 PF01409 tRNA synthetases class II core domain (F) ND439_08735 PF00453 Ribosomal protein L20 ND439_08740 PF01632 Ribosomal protein L35 ND439_08745 PF00707 Translation initiation factor IF-3, C-terminal domain ND439_08745 PF05198 Translation initiation factor IF-3, N-terminal domain ND439_08750 PF02824 TGS domain ND439_08750 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND439_08750 PF03129 Anticodon binding domain ND439_08750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND439_08780 PF01914 MarC family integral membrane protein ND439_08785 PF01464 Transglycosylase SLT domain ND439_08790 PF01297 Zinc-uptake complex component A periplasmic ND439_08795 PF00005 ABC transporter ND439_08800 PF00950 ABC 3 transport family ND439_08805 PF00950 ABC 3 transport family ND439_08810 PF03881 Fructosamine kinase ND439_08815 PF14002 YniB-like protein ND439_08820 PF13419 Haloacid dehalogenase-like hydrolase ND439_08825 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND439_08830 PF00375 Sodium:dicarboxylate symporter family ND439_08835 PF01510 N-acetylmuramoyl-L-alanine amidase ND439_08840 PF01614 Bacterial transcriptional regulator ND439_08840 PF09339 IclR helix-turn-helix domain ND439_08845 PF07690 Major Facilitator Superfamily ND439_08855 PF01435 Peptidase family M48 ND439_08860 PF11818 C-terminal domain of tail specific protease (DUF3340) ND439_08860 PF03572 Peptidase family S41 ND439_08860 PF17804 Tail specific protease N-terminal domain ND439_08860 PF00595 PDZ domain ND439_08865 PF04352 ProQ/FINO family ND439_08865 PF17516 ProQ C-terminal domain ND439_08870 PF13185 GAF domain ND439_08875 PF04403 Paraquat-inducible protein A ND439_08880 PF02470 MlaD protein ND439_08885 PF00360 Phytochrome region ND439_08885 PF00990 Diguanylate cyclase, GGDEF domain ND439_08885 PF00563 EAL domain ND439_08885 PF01590 GAF domain ND439_08890 PF07351 Protein of unknown function (DUF1480) ND439_08915 PF05643 Putative bacterial lipoprotein (DUF799) ND439_08925 PF03783 Curli production assembly/transport component CsgG ND439_08930 PF10753 Toxin GhoT_OrtT ND439_08950 PF00144 Beta-lactamase ND439_08960 PF10709 Protein of unknown function (DUF2511) ND439_08965 PF05425 Copper resistance protein D ND439_08970 PF04234 CopC domain ND439_08975 PF00210 Ferritin-like domain ND439_08980 PF06440 DNA polymerase III, theta subunit ND439_08985 PF00561 alpha/beta hydrolase fold ND439_08990 PF00929 Exonuclease ND439_08995 PF00326 Prolyl oligopeptidase family ND439_08995 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND439_09000 PF13995 YebF-like protein ND439_09005 PF04266 ASCH domain ND439_09010 PF07130 YebG protein ND439_09015 PF00271 Helicase conserved C-terminal domain ND439_09015 PF03880 DbpA RNA binding domain ND439_09015 PF00270 DEAD/DEAH box helicase ND439_09020 PF02222 ATP-grasp domain ND439_09025 PF03701 Uncharacterised protein family (UPF0181) ND439_09030 PF04715 Anthranilate synthase component I, N terminal region ND439_09030 PF00425 chorismate binding enzyme ND439_09035 PF00293 NUDIX domain ND439_09040 PF03313 Serine dehydratase alpha chain ND439_09040 PF03315 Serine dehydratase beta chain ND439_09045 PF03741 Integral membrane protein TerC family ND439_09045 PF03471 Transporter associated domain ND439_09050 PF03610 PTS system fructose IIA component ND439_09050 PF03830 PTS system sorbose subfamily IIB component ND439_09055 PF03609 PTS system sorbose-specific iic component ND439_09060 PF03613 PTS system mannose/fructose/sorbose family IID component ND439_09065 PF06173 Protein of unknown function (DUF986) ND439_09070 PF02659 Putative manganese efflux pump ND439_09075 PF02441 Flavoprotein ND439_09090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND439_09090 PF02770 Acyl-CoA dehydrogenase, middle domain ND439_09090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND439_09100 PF00732 GMC oxidoreductase ND439_09100 PF05199 GMC oxidoreductase ND439_09105 PF00501 AMP-binding enzyme ND439_09105 PF00668 Condensation domain ND439_09105 PF00550 Phosphopantetheine attachment site ND439_09105 PF13193 AMP-binding enzyme C-terminal domain ND439_09110 PF07690 Major Facilitator Superfamily ND439_09130 PF13847 Methyltransferase domain ND439_09135 PF00905 Penicillin binding protein transpeptidase domain ND439_09135 PF03717 Penicillin-binding Protein dimerisation domain ND439_09140 PF02578 Multi-copper polyphenol oxidoreductase laccase ND439_09145 PF00313 'Cold-shock' DNA-binding domain ND439_09150 PF10736 Protein of unknown function (DUF2627) ND439_09155 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND439_09160 PF00324 Amino acid permease ND439_09175 PF13974 YebO-like protein ND439_09180 PF13998 MgrB protein ND439_09185 PF13996 YobH-like protein ND439_09190 PF10964 Protein of unknown function (DUF2766) ND439_09195 PF12833 Helix-turn-helix domain ND439_09210 PF13520 Amino acid permease ND439_09215 PF00664 ABC transporter transmembrane region ND439_09215 PF00005 ABC transporter ND439_09225 PF00360 Phytochrome region ND439_09225 PF01590 GAF domain ND439_09225 PF00563 EAL domain ND439_09225 PF00990 Diguanylate cyclase, GGDEF domain ND439_09230 PF03372 Endonuclease/Exonuclease/phosphatase family ND439_09240 PF06411 HdeA/HdeB family ND439_09245 PF07478 D-ala D-ala ligase C-terminus ND439_09245 PF01820 D-ala D-ala ligase N-terminus ND439_09260 PF08241 Methyltransferase domain ND439_09265 PF00313 'Cold-shock' DNA-binding domain ND439_09270 PF00313 'Cold-shock' DNA-binding domain ND439_09280 PF04794 YdjC-like protein ND439_09285 PF07883 Cupin domain ND439_09285 PF12833 Helix-turn-helix domain ND439_09290 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND439_09295 PF00232 Glycosyl hydrolase family 1 ND439_09300 PF02378 Phosphotransferase system, EIIC ND439_09305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND439_09310 PF01479 S4 domain ND439_09310 PF00849 RNA pseudouridylate synthase ND439_09320 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND439_09325 PF03553 Na+/H+ antiporter family ND439_09335 PF13520 Amino acid permease ND439_09350 PF00849 RNA pseudouridylate synthase ND439_09355 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND439_09360 PF13520 Amino acid permease ND439_09365 PF04960 Glutaminase ND439_09395 PF13673 Acetyltransferase (GNAT) domain ND439_09405 PF00034 Cytochrome c ND439_09405 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND439_09420 PF00528 Binding-protein-dependent transport system inner membrane component ND439_09425 PF00005 ABC transporter ND439_09435 PF02203 Tar ligand binding domain homologue ND439_09435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND439_09435 PF00672 HAMP domain ND439_09440 PF13276 HTH-like domain ND439_09440 PF00665 Integrase core domain ND439_09440 PF13333 Integrase core domain ND439_09460 PF01066 CDP-alcohol phosphatidyltransferase ND439_09465 PF01541 GIY-YIG catalytic domain ND439_09465 PF08459 UvrC Helix-hairpin-helix N-terminal ND439_09465 PF02151 UvrB/uvrC motif ND439_09470 PF00072 Response regulator receiver domain ND439_09470 PF00196 Bacterial regulatory proteins, luxR family ND439_09475 PF10769 Protein of unknown function (DUF2594) ND439_09495 PF00324 Amino acid permease ND439_09500 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND439_09500 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND439_09500 PF01276 Orn/Lys/Arg decarboxylase, major domain ND439_09505 PF13520 Amino acid permease ND439_09510 PF18500 CadC C-terminal domain 1 ND439_09510 PF00486 Transcriptional regulatory protein, C terminal ND439_09515 PF00474 Sodium:solute symporter family ND439_09520 PF00171 Aldehyde dehydrogenase family ND439_09520 PF01619 Proline dehydrogenase ND439_09520 PF14850 DNA-binding domain of Proline dehydrogenase ND439_09520 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND439_09525 PF00005 ABC transporter ND439_09530 PF00528 Binding-protein-dependent transport system inner membrane component ND439_09535 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_09540 PF00291 Pyridoxal-phosphate dependent enzyme ND439_09545 PF02899 Phage integrase, N-terminal SAM-like domain ND439_09550 PF04539 Sigma-70 region 3 ND439_09550 PF04545 Sigma-70, region 4 ND439_09550 PF04542 Sigma-70 region 2 ND439_09555 PF00700 Bacterial flagellin C-terminal helical region ND439_09555 PF08884 Flagellin D3 domain ND439_09555 PF00669 Bacterial flagellin N-terminal helical region ND439_09560 PF00669 Bacterial flagellin N-terminal helical region ND439_09560 PF00700 Bacterial flagellin C-terminal helical region ND439_09560 PF08884 Flagellin D3 domain ND439_09565 PF08884 Flagellin D3 domain ND439_09565 PF00700 Bacterial flagellin C-terminal helical region ND439_09565 PF00669 Bacterial flagellin N-terminal helical region ND439_09570 PF07196 Flagellin hook IN motif ND439_09570 PF07195 Flagellar hook-associated protein 2 C-terminus ND439_09570 PF02465 Flagellar hook-associated protein 2 N-terminus ND439_09575 PF02561 Flagellar protein FliS ND439_09580 PF05400 Flagellar protein FliT ND439_09585 PF12833 Helix-turn-helix domain ND439_09590 PF01966 HD domain ND439_09595 PF02254 TrkA-N domain ND439_09595 PF07885 Ion channel ND439_09600 PF01223 DNA/RNA non-specific endonuclease ND439_09605 PF02049 Flagellar hook-basal body complex protein FliE ND439_09610 PF01514 Secretory protein of YscJ/FliF family ND439_09610 PF08345 Flagellar M-ring protein C-terminal ND439_09615 PF01706 FliG C-terminal domain ND439_09615 PF14841 FliG middle domain ND439_09615 PF14842 FliG N-terminal domain ND439_09620 PF02108 Flagellar assembly protein FliH ND439_09625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND439_09625 PF18269 T3SS EscN ATPase C-terminal domain ND439_09630 PF02050 Flagellar FliJ protein ND439_09635 PF02120 Flagellar hook-length control protein FliK ND439_09640 PF03748 Flagellar basal body-associated protein FliL ND439_09645 PF02154 Flagellar motor switch protein FliM ND439_09645 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND439_09650 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND439_09650 PF16973 Flagellar motor switch protein FliN N-terminal ND439_09655 PF04347 Flagellar biosynthesis protein, FliO ND439_09660 PF00813 FliP family ND439_09665 PF01313 Bacterial export proteins, family 3 ND439_09670 PF01311 Bacterial export proteins, family 1 ND439_09675 PF00669 Bacterial flagellin N-terminal helical region ND439_09680 PF00460 Flagella basal body rod protein ND439_09680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND439_09685 PF10135 Rod binding protein ND439_09685 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND439_09690 PF02119 Flagellar P-ring protein ND439_09695 PF02107 Flagellar L-ring protein ND439_09700 PF00460 Flagella basal body rod protein ND439_09700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND439_09705 PF00460 Flagella basal body rod protein ND439_09705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND439_09710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND439_09710 PF07559 Flagellar basal body protein FlaE ND439_09710 PF00460 Flagella basal body rod protein ND439_09715 PF13860 FlgD Ig-like domain ND439_09715 PF03963 Flagellar hook capping protein - N-terminal region ND439_09715 PF13861 FlgD Tudor-like domain ND439_09720 PF00460 Flagella basal body rod protein ND439_09720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND439_09725 PF00460 Flagella basal body rod protein ND439_09730 PF13144 Chaperone for flagella basal body P-ring formation ND439_09730 PF17656 FlgA N-terminal domain ND439_09735 PF04316 Anti-sigma-28 factor, FlgM ND439_09740 PF05130 FlgN protein ND439_09745 PF06366 Flagellar protein FlhE ND439_09750 PF00771 FHIPEP family ND439_09755 PF01312 FlhB HrpN YscU SpaS Family ND439_09765 PF04344 Chemotaxis phosphatase, CheZ ND439_09770 PF00072 Response regulator receiver domain ND439_09775 PF01339 CheB methylesterase ND439_09775 PF00072 Response regulator receiver domain ND439_09780 PF01739 CheR methyltransferase, SAM binding domain ND439_09780 PF03705 CheR methyltransferase, all-alpha domain ND439_09785 PF02203 Tar ligand binding domain homologue ND439_09785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND439_09785 PF00672 HAMP domain ND439_09790 PF02203 Tar ligand binding domain homologue ND439_09790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND439_09790 PF00672 HAMP domain ND439_09795 PF01584 CheW-like domain ND439_09800 PF01584 CheW-like domain ND439_09800 PF09078 CheY binding ND439_09800 PF01627 Hpt domain ND439_09800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_09800 PF02895 Signal transducing histidine kinase, homodimeric domain ND439_09805 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND439_09805 PF00691 OmpA family ND439_09810 PF01618 MotA/TolQ/ExbB proton channel family ND439_09815 PF05280 Flagellar transcriptional activator (FlhC) ND439_09820 PF05247 Flagellar transcriptional activator (FlhD) ND439_09825 PF00582 Universal stress protein family ND439_09835 PF02308 MgtC family ND439_09840 PF00672 HAMP domain ND439_09840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND439_09840 PF02203 Tar ligand binding domain homologue ND439_09845 PF10781 Dextransucrase DSRB ND439_09850 PF00313 'Cold-shock' DNA-binding domain ND439_09860 PF00356 Bacterial regulatory proteins, lacI family ND439_09865 PF00703 Glycosyl hydrolases family 2 ND439_09865 PF02929 Beta galactosidase small chain ND439_09865 PF16353 Domain of unknown function(DUF4981) ND439_09865 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND439_09865 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND439_09870 PF08240 Alcohol dehydrogenase GroES-like domain ND439_09870 PF00107 Zinc-binding dehydrogenase ND439_09870 PF16197 Ketoacyl-synthetase C-terminal extension ND439_09870 PF00109 Beta-ketoacyl synthase, N-terminal domain ND439_09870 PF02801 Beta-ketoacyl synthase, C-terminal domain ND439_09870 PF08659 KR domain ND439_09870 PF00550 Phosphopantetheine attachment site ND439_09870 PF14765 Polyketide synthase dehydratase ND439_09870 PF00698 Acyl transferase domain ND439_09875 PF10777 Inner membrane protein YlaC ND439_09885 PF14001 YdfZ protein ND439_09895 PF06167 Glucose-regulated metallo-peptidase M90 ND439_09905 PF00589 Phage integrase family ND439_09905 PF13356 Arm DNA-binding domain ND439_09920 PF13693 Winged helix-turn-helix DNA-binding ND439_09960 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND439_09960 PF01648 4'-phosphopantetheinyl transferase superfamily ND439_09965 PF00939 Sodium:sulfate symporter transmembrane region ND439_09970 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND439_09975 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND439_09980 PF04223 Citrate lyase, alpha subunit (CitF) ND439_09985 PF03328 HpcH/HpaI aldolase/citrate lyase family ND439_09990 PF06857 Malonate decarboxylase delta subunit (MdcD) ND439_09995 PF08218 Citrate lyase ligase C-terminal domain ND439_10000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_10000 PF00989 PAS fold ND439_10000 PF17203 Single cache domain 3 ND439_10000 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND439_10005 PF12431 Transcriptional regulator ND439_10005 PF00072 Response regulator receiver domain ND439_10010 PF00196 Bacterial regulatory proteins, luxR family ND439_10010 PF00072 Response regulator receiver domain ND439_10015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_10015 PF07730 Histidine kinase ND439_10015 PF05231 MASE1 ND439_10020 PF07690 Major Facilitator Superfamily ND439_10030 PF00528 Binding-protein-dependent transport system inner membrane component ND439_10035 PF00005 ABC transporter ND439_10035 PF08402 TOBE domain ND439_10050 PF04363 Protein of unknown function (DUF496) ND439_10055 PF04632 Fusaric acid resistance protein family ND439_10065 PF08411 Exonuclease C-terminal ND439_10065 PF00929 Exonuclease ND439_10070 PF13520 Amino acid permease ND439_10075 PF07715 TonB-dependent Receptor Plug Domain ND439_10075 PF00593 TonB dependent receptor ND439_10080 PF00005 ABC transporter ND439_10085 PF01032 FecCD transport family ND439_10095 PF00324 Amino acid permease ND439_10100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_10100 PF03466 LysR substrate binding domain ND439_10110 PF03601 Conserved hypothetical protein 698 ND439_10115 PF01261 Xylose isomerase-like TIM barrel ND439_10120 PF02378 Phosphotransferase system, EIIC ND439_10120 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND439_10125 PF00294 pfkB family carbohydrate kinase ND439_10130 PF00381 PTS HPr component phosphorylation site ND439_10130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND439_10135 PF00293 NUDIX domain ND439_10140 PF03264 NapC/NirT cytochrome c family, N-terminal region ND439_10145 PF18364 Molybdopterin oxidoreductase N-terminal domain ND439_10145 PF01568 Molydopterin dinucleotide binding domain ND439_10145 PF00384 Molybdopterin oxidoreductase ND439_10150 PF03692 Putative zinc- or iron-chelating domain ND439_10155 PF03222 Tryptophan/tyrosine permease family ND439_10160 PF08207 Elongation factor P (EF-P) KOW-like domain ND439_10160 PF09285 Elongation factor P, C-terminal ND439_10160 PF01132 Elongation factor P (EF-P) OB domain ND439_10165 PF03786 D-mannonate dehydratase (UxuA) ND439_10170 PF01232 Mannitol dehydrogenase Rossmann domain ND439_10170 PF08125 Mannitol dehydrogenase C-terminal domain ND439_10180 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND439_10180 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND439_10185 PF01569 PAP2 superfamily ND439_10190 PF00877 NlpC/P60 family ND439_10195 PF12792 CSS motif domain associated with EAL ND439_10195 PF00563 EAL domain ND439_10200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND439_10205 PF00528 Binding-protein-dependent transport system inner membrane component ND439_10210 PF00528 Binding-protein-dependent transport system inner membrane component ND439_10210 PF12911 N-terminal TM domain of oligopeptide transport permease C ND439_10215 PF00005 ABC transporter ND439_10215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND439_10220 PF13989 YejG-like protein ND439_10225 PF07690 Major Facilitator Superfamily ND439_10230 PF00849 RNA pseudouridylate synthase ND439_10230 PF01479 S4 domain ND439_10235 PF00271 Helicase conserved C-terminal domain ND439_10235 PF04851 Type III restriction enzyme, res subunit ND439_10240 PF01386 Ribosomal L25p family ND439_10245 PF04245 37-kD nucleoid-associated bacterial protein ND439_10250 PF07208 Protein of unknown function (DUF1414) ND439_10255 PF00884 Sulfatase ND439_10255 PF11893 Domain of unknown function (DUF3413) ND439_10275 PF06183 DinI-like family ND439_10280 PF12706 Beta-lactamase superfamily domain ND439_10285 PF00144 Beta-lactamase ND439_10290 PF13302 Acetyltransferase (GNAT) domain ND439_10305 PF00267 Gram-negative porin ND439_10310 PF07690 Major Facilitator Superfamily ND439_10315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_10315 PF01627 Hpt domain ND439_10315 PF16359 RcsD-ABL domain ND439_10320 PF00196 Bacterial regulatory proteins, luxR family ND439_10320 PF00072 Response regulator receiver domain ND439_10325 PF00072 Response regulator receiver domain ND439_10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_10325 PF00512 His Kinase A (phospho-acceptor) domain ND439_10325 PF09456 RcsC Alpha-Beta-Loop (ABL) ND439_10330 PF03989 DNA gyrase C-terminal domain, beta-propeller ND439_10330 PF00521 DNA gyrase/topoisomerase IV, subunit A ND439_10340 PF03477 ATP cone domain ND439_10340 PF02867 Ribonucleotide reductase, barrel domain ND439_10340 PF00317 Ribonucleotide reductase, all-alpha domain ND439_10345 PF00268 Ribonucleotide reductase, small chain ND439_10350 PF00111 2Fe-2S iron-sulfur cluster binding domain ND439_10360 PF03974 Ecotin ND439_10365 PF00994 Probable molybdopterin binding domain ND439_10370 PF04138 GtrA-like protein ND439_10375 PF00535 Glycosyl transferase family 2 ND439_10385 PF03222 Tryptophan/tyrosine permease family ND439_10390 PF07437 YfaZ precursor ND439_10395 PF06628 Catalase-related immune-responsive ND439_10395 PF00199 Catalase ND439_10400 PF00501 AMP-binding enzyme ND439_10400 PF13193 AMP-binding enzyme C-terminal domain ND439_10405 PF13378 Enolase C-terminal domain-like ND439_10410 PF00378 Enoyl-CoA hydratase/isomerase ND439_10415 PF12697 Alpha/beta hydrolase family ND439_10420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND439_10420 PF16582 Middle domain of thiamine pyrophosphate ND439_10420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND439_10425 PF00425 chorismate binding enzyme ND439_10430 PF05957 Bacterial protein of unknown function (DUF883) ND439_10435 PF06496 Protein of unknown function (DUF1097) ND439_10440 PF00361 Proton-conducting membrane transporter ND439_10445 PF00361 Proton-conducting membrane transporter ND439_10450 PF00361 Proton-conducting membrane transporter ND439_10450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND439_10455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND439_10460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND439_10465 PF12838 4Fe-4S dicluster domain ND439_10470 PF00146 NADH dehydrogenase ND439_10475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND439_10475 PF00384 Molybdopterin oxidoreductase ND439_10475 PF01568 Molydopterin dinucleotide binding domain ND439_10475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND439_10480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND439_10480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND439_10480 PF10531 SLBB domain ND439_10490 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND439_10490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND439_10495 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND439_10500 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND439_10505 PF03466 LysR substrate binding domain ND439_10505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_10510 PF00155 Aminotransferase class I and II ND439_10520 PF03600 Citrate transporter ND439_10520 PF02080 TrkA-C domain ND439_10530 PF03887 YfbU domain ND439_10535 PF04217 Protein of unknown function, DUF412 ND439_10540 PF00871 Acetokinase family ND439_10545 PF07085 DRTGG domain ND439_10545 PF01515 Phosphate acetyl/butaryl transferase ND439_10550 PF00356 Bacterial regulatory proteins, lacI family ND439_10550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND439_10555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND439_10565 PF03611 PTS system sugar-specific permease component ND439_10570 PF00293 NUDIX domain ND439_10575 PF12850 Calcineurin-like phosphoesterase superfamily domain ND439_10585 PF00043 Glutathione S-transferase, C-terminal domain ND439_10585 PF02798 Glutathione S-transferase, N-terminal domain ND439_10590 PF08338 Domain of unknown function (DUF1731) ND439_10590 PF01370 NAD dependent epimerase/dehydratase family ND439_10595 PF00005 ABC transporter ND439_10600 PF00528 Binding-protein-dependent transport system inner membrane component ND439_10605 PF00528 Binding-protein-dependent transport system inner membrane component ND439_10610 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_10620 PF02441 Flavoprotein ND439_10625 PF00156 Phosphoribosyl transferase domain ND439_10630 PF02674 Colicin V production protein ND439_10635 PF05036 Sporulation related domain ND439_10640 PF08245 Mur ligase middle domain ND439_10640 PF02875 Mur ligase family, glutamate ligase domain ND439_10645 PF17848 Acetyl-coA carboxylase zinc finger domain ND439_10645 PF01039 Carboxyl transferase domain ND439_10650 PF09335 SNARE associated Golgi protein ND439_10655 PF01416 tRNA pseudouridine synthase ND439_10660 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND439_10660 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND439_10665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND439_10665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND439_10665 PF11890 Domain of unknown function (DUF3410) ND439_10685 PF00155 Aminotransferase class I and II ND439_10690 PF00578 AhpC/TSA family ND439_10720 PF00109 Beta-ketoacyl synthase, N-terminal domain ND439_10720 PF02801 Beta-ketoacyl synthase, C-terminal domain ND439_10725 PF01266 FAD dependent oxidoreductase ND439_10725 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND439_10730 PF08891 YfcL protein ND439_10735 PF04315 Elongation factor P hydroxylase ND439_10740 PF01925 Sulfite exporter TauE/SafE ND439_10745 PF03411 Penicillin-insensitive murein endopeptidase ND439_10750 PF01264 Chorismate synthase ND439_10755 PF05175 Methyltransferase small domain ND439_10760 PF01713 Smr domain ND439_10765 PF00300 Histidine phosphatase superfamily (branch 1) ND439_10770 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND439_10770 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND439_10770 PF00378 Enoyl-CoA hydratase/isomerase ND439_10775 PF02803 Thiolase, C-terminal domain ND439_10775 PF00108 Thiolase, N-terminal domain ND439_10780 PF04175 Protein of unknown function (DUF406) ND439_10785 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND439_10790 PF04333 MlaA lipoprotein ND439_10795 PF03918 Cytochrome C biogenesis protein ND439_10800 PF03918 Cytochrome C biogenesis protein ND439_10805 PF08534 Redoxin ND439_10810 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND439_10810 PF01578 Cytochrome C assembly protein ND439_10815 PF03100 CcmE ND439_10820 PF04995 Heme exporter protein D (CcmD) ND439_10825 PF01578 Cytochrome C assembly protein ND439_10830 PF03379 CcmB protein ND439_10835 PF00005 ABC transporter ND439_10845 PF00589 Phage integrase family ND439_10845 PF13356 Arm DNA-binding domain ND439_10850 PF05930 Prophage CP4-57 regulatory protein (AlpA) ND439_10895 PF04606 Ogr/Delta-like zinc finger ND439_10925 PF08274 PhnA Zinc-Ribbon ND439_10925 PF03831 PhnA domain ND439_10930 PF13406 Transglycosylase SLT domain ND439_10945 PF01292 Prokaryotic cytochrome b561 ND439_10950 PF00155 Aminotransferase class I and II ND439_10955 PF07350 Protein of unknown function (DUF1479) ND439_10960 PF07694 5TMR of 5TMR-LYT ND439_10960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_10960 PF06580 Histidine kinase ND439_10965 PF00072 Response regulator receiver domain ND439_10965 PF04397 LytTr DNA-binding domain ND439_10970 PF07690 Major Facilitator Superfamily ND439_10975 PF02685 Glucokinase ND439_10985 PF03466 LysR substrate binding domain ND439_10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_10995 PF01566 Natural resistance-associated macrophage protein ND439_11000 PF07670 Nucleoside recognition ND439_11000 PF07662 Na+ dependent nucleoside transporter C-terminus ND439_11000 PF01773 Na+ dependent nucleoside transporter N-terminus ND439_11030 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND439_11055 PF12843 Putative quorum-sensing-regulated virulence factor ND439_11060 PF12826 Helix-hairpin-helix motif ND439_11060 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND439_11060 PF01653 NAD-dependent DNA ligase adenylation domain ND439_11060 PF00533 BRCA1 C Terminus (BRCT) domain ND439_11060 PF03120 NAD-dependent DNA ligase OB-fold domain ND439_11065 PF04354 ZipA, C-terminal FtsZ-binding domain ND439_11075 PF00291 Pyridoxal-phosphate dependent enzyme ND439_11080 PF00381 PTS HPr component phosphorylation site ND439_11085 PF05524 PEP-utilising enzyme, N-terminal ND439_11085 PF00391 PEP-utilising enzyme, mobile domain ND439_11085 PF02896 PEP-utilising enzyme, TIM barrel domain ND439_11090 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND439_11095 PF00291 Pyridoxal-phosphate dependent enzyme ND439_11100 PF00005 ABC transporter ND439_11105 PF00528 Binding-protein-dependent transport system inner membrane component ND439_11110 PF00528 Binding-protein-dependent transport system inner membrane component ND439_11120 PF07690 Major Facilitator Superfamily ND439_11125 PF01418 Helix-turn-helix domain, rpiR family ND439_11125 PF01380 SIS domain ND439_11130 PF04074 YhcH/YjgK/YiaL ND439_11135 PF00480 ROK family ND439_11140 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND439_11145 PF00701 Dihydrodipicolinate synthetase family ND439_11150 PF04261 Dyp-type peroxidase family ND439_11155 PF06572 Protein of unknown function (DUF1131) ND439_11160 PF04076 Bacterial OB fold (BOF) protein ND439_11165 PF00583 Acetyltransferase (GNAT) family ND439_11170 PF01218 Coproporphyrinogen III oxidase ND439_11175 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND439_11180 PF00390 Malic enzyme, N-terminal domain ND439_11180 PF01515 Phosphate acetyl/butaryl transferase ND439_11180 PF03949 Malic enzyme, NAD binding domain ND439_11185 PF00293 NUDIX domain ND439_11190 PF03264 NapC/NirT cytochrome c family, N-terminal region ND439_11195 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND439_11200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND439_11200 PF00384 Molybdopterin oxidoreductase ND439_11200 PF01568 Molydopterin dinucleotide binding domain ND439_11200 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND439_11205 PF03927 NapD protein ND439_11210 PF00037 4Fe-4S binding domain ND439_11210 PF13187 4Fe-4S dicluster domain ND439_11210 PF12800 4Fe-4S binding domain ND439_11215 PF00196 Bacterial regulatory proteins, luxR family ND439_11215 PF00072 Response regulator receiver domain ND439_11225 PF00873 AcrB/AcrD/AcrF family ND439_11235 PF01817 Chorismate mutase type II ND439_11240 PF03960 ArsC family ND439_11245 PF07687 Peptidase dimerisation domain ND439_11245 PF01546 Peptidase family M20/M25/M40 ND439_11250 PF02557 D-alanyl-D-alanine carboxypeptidase ND439_11255 PF13980 Uncharacterised protein family (UPF0370) ND439_11260 PF02230 Phospholipase/Carboxylesterase ND439_11265 PF05127 Helicase ND439_11265 PF13718 GNAT acetyltransferase 2 ND439_11265 PF08351 Domain of unknown function (DUF1726) ND439_11265 PF17176 tRNA-binding domain ND439_11270 PF04284 Protein of unknown function (DUF441) ND439_11275 PF01259 SAICAR synthetase ND439_11280 PF06804 NlpB/DapX lipoprotein ND439_11285 PF00701 Dihydrodipicolinate synthetase family ND439_11290 PF01842 ACT domain ND439_11295 PF00578 AhpC/TSA family ND439_11300 PF01594 AI-2E family transporter ND439_11305 PF01435 Peptidase family M48 ND439_11305 PF07720 Tetratricopeptide repeat ND439_11310 PF03960 ArsC family ND439_11315 PF00308 Bacterial dnaA protein ND439_11320 PF00860 Permease family ND439_11330 PF00586 AIR synthase related protein, N-terminal domain ND439_11330 PF02769 AIR synthase related protein, C-terminal domain ND439_11335 PF00551 Formyl transferase ND439_11340 PF13302 Acetyltransferase (GNAT) domain ND439_11345 PF00005 ABC transporter ND439_11350 PF00528 Binding-protein-dependent transport system inner membrane component ND439_11355 PF00528 Binding-protein-dependent transport system inner membrane component ND439_11360 PF02503 Polyphosphate kinase middle domain ND439_11360 PF13089 Polyphosphate kinase N-terminal domain ND439_11360 PF13090 Polyphosphate kinase C-terminal domain 2 ND439_11360 PF17941 Polyphosphate kinase C-terminal domain 1 ND439_11365 PF02541 Ppx/GppA phosphatase family ND439_11375 PF03448 MgtE intracellular N domain ND439_11375 PF00571 CBS domain ND439_11375 PF01769 Divalent cation transporter ND439_11380 PF00012 Hsp70 protein ND439_11390 PF02753 Pili assembly chaperone PapD, C-terminal domain ND439_11390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND439_11395 PF13953 PapC C-terminal domain ND439_11395 PF13954 PapC N-terminal domain ND439_11395 PF00577 Outer membrane usher protein ND439_11405 PF13533 Biotin-lipoyl like ND439_11410 PF00873 AcrB/AcrD/AcrF family ND439_11415 PF00873 AcrB/AcrD/AcrF family ND439_11420 PF07690 Major Facilitator Superfamily ND439_11425 PF00672 HAMP domain ND439_11425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_11425 PF00512 His Kinase A (phospho-acceptor) domain ND439_11430 PF00486 Transcriptional regulatory protein, C terminal ND439_11430 PF00072 Response regulator receiver domain ND439_11435 PF07411 Domain of unknown function (DUF1508) ND439_11440 PF01136 Peptidase family U32 ND439_11440 PF16325 Peptidase family U32 C-terminal domain ND439_11445 PF00781 Diacylglycerol kinase catalytic domain ND439_11460 PF08543 Phosphomethylpyrimidine kinase ND439_11470 PF00117 Glutamine amidotransferase class-I ND439_11470 PF00958 GMP synthase C terminal domain ND439_11470 PF02540 NAD synthase ND439_11475 PF00571 CBS domain ND439_11475 PF00478 IMP dehydrogenase / GMP reductase domain ND439_11480 PF02601 Exonuclease VII, large subunit ND439_11480 PF13742 OB-fold nucleic acid binding domain ND439_11485 PF07191 zinc-ribbons ND439_11490 PF01926 50S ribosome-binding GTPase ND439_11490 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND439_11495 PF13360 PQQ-like domain ND439_11500 PF09976 Tetratricopeptide repeat-like domain ND439_11505 PF13393 Histidyl-tRNA synthetase ND439_11505 PF03129 Anticodon binding domain ND439_11510 PF04551 GcpE protein ND439_11515 PF13464 Domain of unknown function (DUF4115) ND439_11525 PF04055 Radical SAM superfamily ND439_11530 PF00334 Nucleoside diphosphate kinase ND439_11540 PF00905 Penicillin binding protein transpeptidase domain ND439_11540 PF00912 Transglycosylase ND439_11540 PF06832 Penicillin-Binding Protein C-terminus Family ND439_11545 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND439_11545 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND439_11545 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND439_11545 PF17962 Bacterial macroglobulin domain 6 ND439_11545 PF01835 MG2 domain ND439_11545 PF07703 Alpha-2-macroglobulin bait region domain ND439_11545 PF00207 Alpha-2-macroglobulin family ND439_11545 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND439_11545 PF07678 A-macroglobulin TED domain ND439_11550 PF14581 SseB protein C-terminal domain ND439_11550 PF07179 SseB protein N-terminal domain ND439_11555 PF00883 Cytosol aminopeptidase family, catalytic domain ND439_11555 PF12404 Peptidase ND439_11560 PF04384 Iron-sulphur cluster assembly ND439_11565 PF00111 2Fe-2S iron-sulfur cluster binding domain ND439_11570 PF00012 Hsp70 protein ND439_11575 PF07743 HSCB C-terminal oligomerisation domain ND439_11575 PF00226 DnaJ domain ND439_11580 PF01521 Iron-sulphur cluster biosynthesis ND439_11585 PF01592 NifU-like N terminal domain ND439_11590 PF00266 Aminotransferase class-V ND439_11595 PF02082 Transcriptional regulator ND439_11600 PF00588 SpoU rRNA Methylase family ND439_11605 PF00459 Inositol monophosphatase family ND439_11610 PF03824 High-affinity nickel-transport protein ND439_11615 PF06226 Protein of unknown function (DUF1007) ND439_11620 PF00874 PRD domain ND439_11625 PF12832 MFS_1 like family ND439_11630 PF00464 Serine hydroxymethyltransferase ND439_11635 PF00175 Oxidoreductase NAD-binding domain ND439_11635 PF00042 Globin ND439_11635 PF00970 Oxidoreductase FAD-binding domain ND439_11640 PF14502 Helix-turn-helix domain ND439_11640 PF14503 YhfZ C-terminal domain ND439_11650 PF01168 Alanine racemase, N-terminal domain ND439_11655 PF02126 Phosphotriesterase family ND439_11660 PF10941 Protein of unknown function DUF2620 ND439_11665 PF10797 Protein of unknown function ND439_11670 PF00543 Nitrogen regulatory protein P-II ND439_11675 PF02540 NAD synthase ND439_11675 PF00795 Carbon-nitrogen hydrolase ND439_11680 PF00158 Sigma-54 interaction domain ND439_11680 PF00072 Response regulator receiver domain ND439_11685 PF13942 YfhG lipoprotein ND439_11690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_11690 PF00512 His Kinase A (phospho-acceptor) domain ND439_11700 PF02769 AIR synthase related protein, C-terminal domain ND439_11700 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND439_11700 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND439_11705 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_11705 PF01464 Transglycosylase SLT domain ND439_11710 PF14437 MafB19-like deaminase ND439_11720 PF02378 Phosphotransferase system, EIIC ND439_11720 PF00367 phosphotransferase system, EIIB ND439_11725 PF01380 SIS domain ND439_11730 PF01418 Helix-turn-helix domain, rpiR family ND439_11730 PF01380 SIS domain ND439_11735 PF12838 4Fe-4S dicluster domain ND439_11740 PF01648 4'-phosphopantetheinyl transferase superfamily ND439_11745 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND439_11750 PF02565 Recombination protein O C terminal ND439_11750 PF11967 Recombination protein O N terminal ND439_11755 PF01926 50S ribosome-binding GTPase ND439_11755 PF07650 KH domain ND439_11760 PF14622 Ribonuclease-III-like ND439_11760 PF00035 Double-stranded RNA binding motif ND439_11765 PF10502 Signal peptidase, peptidase S26 ND439_11770 PF00679 Elongation factor G C-terminus ND439_11770 PF00009 Elongation factor Tu GTP binding domain ND439_11770 PF03144 Elongation factor Tu domain 2 ND439_11770 PF06421 GTP-binding protein LepA C-terminus ND439_11780 PF03888 MucB/RseB N-terminal domain ND439_11780 PF17188 MucB/RseB C-terminal domain ND439_11785 PF03873 Anti sigma-E protein RseA, C-terminal domain ND439_11785 PF03872 Anti sigma-E protein RseA, N-terminal domain ND439_11790 PF08281 Sigma-70, region 4 ND439_11790 PF04542 Sigma-70 region 2 ND439_11795 PF00890 FAD binding domain ND439_11795 PF02910 Fumarate reductase flavoprotein C-term ND439_11800 PF05175 Methyltransferase small domain ND439_11805 PF00271 Helicase conserved C-terminal domain ND439_11805 PF00270 DEAD/DEAH box helicase ND439_11810 PF12796 Ankyrin repeats (3 copies) ND439_11820 PF01228 Glycine radical ND439_11825 PF03167 Uracil DNA glycosylase superfamily ND439_11830 PF01025 GrpE ND439_11835 PF01513 ATP-NAD kinase ND439_11840 PF02463 RecF/RecN/SMC N terminal domain ND439_11845 PF04355 SmpA / OmlA family ND439_11850 PF03658 RnfH family Ubiquitin ND439_11855 PF03364 Polyketide cyclase / dehydrase and lipid transport ND439_11860 PF01668 SmpB protein ND439_11870 PF13356 Arm DNA-binding domain ND439_11870 PF00589 Phage integrase family ND439_11885 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND439_11890 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND439_11895 PF04917 Bacterial shufflon protein, N-terminal constant region ND439_11910 PF17841 BID domain of Bartonella effector protein (Bep) ND439_11910 PF01443 Viral (Superfamily 1) RNA helicase ND439_11910 PF03389 MobA/MobL family ND439_11985 PF01380 SIS domain ND439_11985 PF00571 CBS domain ND439_11990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND439_11990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND439_12000 PF02653 Branched-chain amino acid transport system / permease component ND439_12005 PF00005 ABC transporter ND439_12015 PF00561 alpha/beta hydrolase fold ND439_12020 PF03466 LysR substrate binding domain ND439_12020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_12025 PF02652 L-lactate permease ND439_12030 PF01070 FMN-dependent dehydrogenase ND439_12035 PF06039 Malate:quinone oxidoreductase (Mqo) ND439_12040 PF00313 'Cold-shock' DNA-binding domain ND439_12050 PF06711 Protein of unknown function (DUF1198) ND439_12055 PF09400 Protein of unknown function (DUF2002) ND439_12070 PF07972 NrdI Flavodoxin like ND439_12075 PF02867 Ribonucleotide reductase, barrel domain ND439_12075 PF00317 Ribonucleotide reductase, all-alpha domain ND439_12075 PF08343 Ribonucleotide reductase N-terminal ND439_12080 PF00268 Ribonucleotide reductase, small chain ND439_12085 PF00005 ABC transporter ND439_12085 PF00571 CBS domain ND439_12090 PF00528 Binding-protein-dependent transport system inner membrane component ND439_12095 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND439_12100 PF07690 Major Facilitator Superfamily ND439_12105 PF01047 MarR family ND439_12115 PF00529 HlyD membrane-fusion protein of T1SS ND439_12115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND439_12120 PF07690 Major Facilitator Superfamily ND439_12125 PF00588 SpoU rRNA Methylase family ND439_12125 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND439_12130 PF00085 Thioredoxin ND439_12135 PF03942 DTW domain ND439_12140 PF00583 Acetyltransferase (GNAT) family ND439_12140 PF13380 CoA binding domain ND439_12140 PF13607 Succinyl-CoA ligase like flavodoxin domain ND439_12145 PF13091 PLD-like domain ND439_12150 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND439_12185 PF00005 ABC transporter ND439_12185 PF09383 NIL domain ND439_12190 PF00528 Binding-protein-dependent transport system inner membrane component ND439_12195 PF03180 NLPA lipoprotein ND439_12200 PF16358 RcsF lipoprotein ND439_12205 PF01980 tRNA-methyltransferase O ND439_12205 PF18389 TrmO C-terminal domain ND439_12210 PF03129 Anticodon binding domain ND439_12210 PF04073 Aminoacyl-tRNA editing domain ND439_12210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND439_12215 PF04170 NlpE N-terminal domain ND439_12215 PF17185 NlpE C-terminal OB domain ND439_12220 PF00472 RF-1 domain ND439_12225 PF07152 YaeQ protein ND439_12230 PF06786 Uncharacterised protein family (UPF0253) ND439_12235 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND439_12240 PF00034 Cytochrome c ND439_12245 PF01171 PP-loop family ND439_12245 PF09179 TilS substrate binding domain ND439_12245 PF11734 TilS substrate C-terminal domain ND439_12250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND439_12265 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND439_12270 PF02811 PHP domain ND439_12270 PF01336 OB-fold nucleic acid binding domain ND439_12270 PF14579 Helix-hairpin-helix motif ND439_12270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND439_12270 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND439_12275 PF01351 Ribonuclease HII ND439_12280 PF02684 Lipid-A-disaccharide synthetase ND439_12285 PF00132 Bacterial transferase hexapeptide (six repeats) ND439_12285 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND439_12290 PF07977 FabA-like domain ND439_12295 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND439_12295 PF00132 Bacterial transferase hexapeptide (six repeats) ND439_12300 PF03938 Outer membrane protein (OmpH-like) ND439_12305 PF07244 Surface antigen variable number repeat ND439_12305 PF01103 Surface antigen ND439_12310 PF17820 PDZ domain ND439_12310 PF02163 Peptidase family M50 ND439_12320 PF01255 Putative undecaprenyl diphosphate synthase ND439_12325 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND439_12325 PF13288 DXP reductoisomerase C-terminal domain ND439_12325 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND439_12330 PF01765 Ribosome recycling factor ND439_12335 PF00696 Amino acid kinase family ND439_12340 PF00889 Elongation factor TS ND439_12345 PF00318 Ribosomal protein S2 ND439_12350 PF00557 Metallopeptidase family M24 ND439_12355 PF01909 Nucleotidyltransferase domain ND439_12355 PF08335 GlnD PII-uridylyltransferase ND439_12355 PF01842 ACT domain ND439_12355 PF01966 HD domain ND439_12360 PF14602 Hexapeptide repeat of succinyl-transferase ND439_12360 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND439_12360 PF00132 Bacterial transferase hexapeptide (six repeats) ND439_12365 PF11944 Protein of unknown function (DUF3461) ND439_12370 PF00258 Flavodoxin ND439_12375 PF00849 RNA pseudouridylate synthase ND439_12380 PF04287 tRNA pseudouridine synthase C ND439_12385 PF07348 Syd protein (SUKH-2) ND439_12390 PF14489 QueF-like protein ND439_12390 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND439_12395 PF03641 Possible lysine decarboxylase ND439_12395 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND439_12395 PF11892 Domain of unknown function (DUF3412) ND439_12400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND439_12400 PF01367 5'-3' exonuclease, C-terminal SAM fold ND439_12405 PF18125 RlmM ferredoxin-like domain ND439_12405 PF01728 FtsJ-like methyltransferase ND439_12410 PF04241 Protein of unknown function (DUF423) ND439_12415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_12415 PF03466 LysR substrate binding domain ND439_12420 PF06004 Bacterial protein of unknown function (DUF903) ND439_12425 PF00266 Aminotransferase class-V ND439_12430 PF02657 Fe-S metabolism associated domain ND439_12435 PF00899 ThiF family ND439_12440 PF06725 3D domain ND439_12440 PF03562 MltA specific insert domain ND439_12460 PF01520 N-acetylmuramoyl-L-alanine amidase ND439_12460 PF11741 AMIN domain ND439_12465 PF00583 Acetyltransferase (GNAT) family ND439_12465 PF00696 Amino acid kinase family ND439_12470 PF13538 UvrD-like helicase C-terminal domain ND439_12475 PF12705 PD-(D/E)XK nuclease superfamily ND439_12475 PF13361 UvrD-like helicase C-terminal domain ND439_12475 PF00580 UvrD/REP helicase N-terminal domain ND439_12480 PF16187 Middle or third domain of peptidase_M16 ND439_12480 PF05193 Peptidase M16 inactive domain ND439_12480 PF00675 Insulinase (Peptidase family M16) ND439_12485 PF17946 RecC C-terminal domain ND439_12490 PF12528 Type II secretion prepilin peptidase dependent protein C ND439_12490 PF07963 Prokaryotic N-terminal methylation motif ND439_12510 PF00303 Thymidylate synthase ND439_12515 PF01790 Prolipoprotein diacylglyceryl transferase ND439_12520 PF01590 GAF domain ND439_12520 PF05524 PEP-utilising enzyme, N-terminal ND439_12520 PF00391 PEP-utilising enzyme, mobile domain ND439_12520 PF02896 PEP-utilising enzyme, TIM barrel domain ND439_12525 PF00293 NUDIX domain ND439_12530 PF02976 DNA mismatch repair enzyme MutH ND439_12535 PF03741 Integral membrane protein TerC family ND439_12540 PF00248 Aldo/keto reductase family ND439_12545 PF07690 Major Facilitator Superfamily ND439_12550 PF00501 AMP-binding enzyme ND439_12550 PF13193 AMP-binding enzyme C-terminal domain ND439_12550 PF01553 Acyltransferase ND439_12555 PF00356 Bacterial regulatory proteins, lacI family ND439_12560 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND439_12560 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND439_12565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_12565 PF03466 LysR substrate binding domain ND439_12570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_12570 PF03466 LysR substrate binding domain ND439_12610 PF07963 Prokaryotic N-terminal methylation motif ND439_12610 PF11612 Type II secretion system (T2SS), protein J ND439_12615 PF07963 Prokaryotic N-terminal methylation motif ND439_12615 PF02501 Type II secretion system (T2SS), protein I ND439_12625 PF07963 Prokaryotic N-terminal methylation motif ND439_12625 PF08334 Type II secretion system (T2SS), protein G ND439_12630 PF00482 Type II secretion system (T2SS), protein F ND439_12635 PF00437 Type II/IV secretion system protein ND439_12640 PF00263 Bacterial type II and III secretion system protein ND439_12640 PF03958 Bacterial type II/III secretion system short domain ND439_12665 PF00005 ABC transporter ND439_12670 PF02405 Permease MlaE ND439_12680 PF00152 tRNA synthetases class II (D, K and N) ND439_12680 PF01336 OB-fold nucleic acid binding domain ND439_12690 PF01368 DHH family ND439_12690 PF17768 RecJ OB domain ND439_12690 PF02272 DHHA1 domain ND439_12695 PF13098 Thioredoxin-like domain ND439_12695 PF10411 Disulfide bond isomerase protein N-terminus ND439_12700 PF02899 Phage integrase, N-terminal SAM-like domain ND439_12700 PF00589 Phage integrase family ND439_12705 PF00258 Flavodoxin ND439_12710 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND439_12715 PF03937 Flavinator of succinate dehydrogenase ND439_12720 PF01571 Aminomethyltransferase folate-binding domain ND439_12725 PF03006 Haemolysin-III related ND439_12735 PF02347 Glycine cleavage system P-protein ND439_12740 PF01597 Glycine cleavage H-protein ND439_12745 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND439_12745 PF01571 Aminomethyltransferase folate-binding domain ND439_12750 PF01494 FAD binding domain ND439_12755 PF01494 FAD binding domain ND439_12760 PF00557 Metallopeptidase family M24 ND439_12760 PF05195 Aminopeptidase P, N-terminal domain ND439_12765 PF03695 Uncharacterised protein family (UPF0149) ND439_12770 PF05164 Cell division protein ZapA ND439_12780 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND439_12785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND439_12785 PF01842 ACT domain ND439_12785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND439_12790 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND439_12795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_12795 PF03466 LysR substrate binding domain ND439_12800 PF04402 Protein of unknown function (DUF541) ND439_12805 PF01810 LysE type translocator ND439_12810 PF00924 Mechanosensitive ion channel ND439_12810 PF05552 Conserved TM helix ND439_12815 PF01116 Fructose-bisphosphate aldolase class-II ND439_12820 PF00162 Phosphoglycerate kinase ND439_12825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND439_12825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND439_12830 PF00456 Transketolase, thiamine diphosphate binding domain ND439_12830 PF02779 Transketolase, pyrimidine binding domain ND439_12830 PF02780 Transketolase, C-terminal domain ND439_12840 PF17944 Arginine decarboxylase C-terminal helical extension ND439_12840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND439_12840 PF17810 Arginine decarboxylase helical bundle domain ND439_12845 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND439_12845 PF02772 S-adenosylmethionine synthetase, central domain ND439_12845 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND439_12855 PF04143 Sulphur transport ND439_12865 PF10263 SprT-like family ND439_12865 PF17283 SprT-like zinc ribbon domain ND439_12870 PF04231 Endonuclease I ND439_12875 PF04452 RNA methyltransferase ND439_12880 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND439_12880 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND439_12885 PF02622 Uncharacterized ACR, COG1678 ND439_12890 PF03652 Holliday junction resolvase ND439_12895 PF00795 Carbon-nitrogen hydrolase ND439_12900 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND439_12905 PF00437 Type II/IV secretion system protein ND439_12910 PF01168 Alanine racemase, N-terminal domain ND439_12915 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND439_12915 PF03807 NADP oxidoreductase coenzyme F420-dependent ND439_12920 PF02325 YGGT family ND439_12925 PF02594 Uncharacterised ACR, YggU family COG1872 ND439_12930 PF01725 Ham1 family ND439_12935 PF04055 Radical SAM superfamily ND439_12935 PF06969 HemN C-terminal domain ND439_12940 PF11101 Protein of unknown function (DUF2884) ND439_12945 PF04960 Glutaminase ND439_12950 PF04320 Protein with unknown function (DUF469) ND439_12955 PF02390 Putative methyltransferase ND439_12960 PF10576 Iron-sulfur binding domain of endonuclease III ND439_12960 PF00730 HhH-GPD superfamily base excision DNA repair protein ND439_12960 PF14815 NUDIX domain ND439_12960 PF00633 Helix-hairpin-helix motif ND439_12965 PF04362 Bacterial Fe(2+) trafficking ND439_12970 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND439_12970 PF01464 Transglycosylase SLT domain ND439_13040 PF03466 LysR substrate binding domain ND439_13040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_13045 PF16456 YmgD protein ND439_13055 PF03608 PTS system enzyme II sorbitol-specific factor ND439_13060 PF03612 Sorbitol phosphotransferase enzyme II N-terminus ND439_13060 PF07663 Sorbitol phosphotransferase enzyme II C-terminus ND439_13065 PF03829 PTS system glucitol/sorbitol-specific IIA component ND439_13070 PF00106 short chain dehydrogenase ND439_13075 PF06923 Glucitol operon activator protein (GutM) ND439_13080 PF00455 DeoR C terminal sensor domain ND439_13080 PF08220 DeoR-like helix-turn-helix domain ND439_13085 PF00571 CBS domain ND439_13085 PF01380 SIS domain ND439_13090 PF00294 pfkB family carbohydrate kinase ND439_13095 PF02901 Pyruvate formate lyase-like ND439_13095 PF01228 Glycine radical ND439_13100 PF00871 Acetokinase family ND439_13105 PF01490 Transmembrane amino acid transporter protein ND439_13110 PF00291 Pyridoxal-phosphate dependent enzyme ND439_13115 PF00668 Condensation domain ND439_13115 PF00975 Thioesterase domain ND439_13115 PF00550 Phosphopantetheine attachment site ND439_13115 PF13193 AMP-binding enzyme C-terminal domain ND439_13115 PF00501 AMP-binding enzyme ND439_13125 PF00550 Phosphopantetheine attachment site ND439_13125 PF00857 Isochorismatase family ND439_13130 PF13193 AMP-binding enzyme C-terminal domain ND439_13130 PF00501 AMP-binding enzyme ND439_13135 PF00425 chorismate binding enzyme ND439_13140 PF01497 Periplasmic binding protein ND439_13145 PF05977 Transmembrane secretion effector ND439_13150 PF01032 FecCD transport family ND439_13155 PF01032 FecCD transport family ND439_13160 PF00005 ABC transporter ND439_13170 PF00668 Condensation domain ND439_13170 PF13193 AMP-binding enzyme C-terminal domain ND439_13170 PF00550 Phosphopantetheine attachment site ND439_13170 PF00501 AMP-binding enzyme ND439_13170 PF00975 Thioesterase domain ND439_13175 PF03621 MbtH-like protein ND439_13180 PF11806 Domain of unknown function (DUF3327) ND439_13180 PF00756 Putative esterase ND439_13185 PF00593 TonB dependent receptor ND439_13185 PF07715 TonB-dependent Receptor Plug Domain ND439_13190 PF08501 Shikimate dehydrogenase substrate binding domain ND439_13230 PF00437 Type II/IV secretion system protein ND439_13265 PF02472 Biopolymer transport protein ExbD/TolR ND439_13270 PF01618 MotA/TolQ/ExbB proton channel family ND439_13275 PF01053 Cys/Met metabolism PLP-dependent enzyme ND439_13280 PF09335 SNARE associated Golgi protein ND439_13285 PF12833 Helix-turn-helix domain ND439_13285 PF06719 AraC-type transcriptional regulator N-terminus ND439_13290 PF00465 Iron-containing alcohol dehydrogenase ND439_13295 PF00248 Aldo/keto reductase family ND439_13300 PF11842 Domain of unknown function (DUF3362) ND439_13300 PF04055 Radical SAM superfamily ND439_13300 PF08497 Radical SAM N-terminal ND439_13305 PF07731 Multicopper oxidase ND439_13305 PF07732 Multicopper oxidase ND439_13310 PF01553 Acyltransferase ND439_13315 PF03989 DNA gyrase C-terminal domain, beta-propeller ND439_13315 PF00521 DNA gyrase/topoisomerase IV, subunit A ND439_13320 PF02525 Flavodoxin-like fold ND439_13325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_13325 PF03466 LysR substrate binding domain ND439_13330 PF00204 DNA gyrase B ND439_13330 PF00986 DNA gyrase B subunit, carboxyl terminus ND439_13330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_13330 PF01751 Toprim domain ND439_13335 PF05728 Uncharacterised protein family (UPF0227) ND439_13340 PF00149 Calcineurin-like phosphoesterase ND439_13345 PF06853 Protein of unknown function (DUF1249) ND439_13350 PF00293 NUDIX domain ND439_13355 PF02321 Outer membrane efflux protein ND439_13360 PF06693 Protein of unknown function (DUF1190) ND439_13365 PF03738 Glutathionylspermidine synthase preATP-grasp ND439_13370 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND439_13375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND439_13380 PF04380 Membrane fusogenic activity ND439_13385 PF01467 Cytidylyltransferase-like ND439_13385 PF00294 pfkB family carbohydrate kinase ND439_13390 PF08335 GlnD PII-uridylyltransferase ND439_13390 PF03710 Glutamate-ammonia ligase adenylyltransferase ND439_13395 PF01928 CYTH domain ND439_13400 PF08239 Bacterial SH3 domain ND439_13405 PF12627 Probable RNA and SrmB- binding site of polymerase A ND439_13405 PF01743 Poly A polymerase head domain ND439_13405 PF01966 HD domain ND439_13410 PF02673 Bacitracin resistance protein BacA ND439_13415 PF02152 Dihydroneopterin aldolase ND439_13420 PF02660 Glycerol-3-phosphate acyltransferase ND439_13425 PF00814 Glycoprotease family ND439_13430 PF01165 Ribosomal protein S21 ND439_13435 PF10410 DnaB-helicase binding domain of primase ND439_13435 PF08278 DNA primase DnaG DnaB-binding ND439_13435 PF08275 DNA primase catalytic core, N-terminal domain ND439_13435 PF01807 CHC2 zinc finger ND439_13440 PF04539 Sigma-70 region 3 ND439_13440 PF04545 Sigma-70, region 4 ND439_13440 PF04542 Sigma-70 region 2 ND439_13440 PF00140 Sigma-70 factor, region 1.2 ND439_13440 PF03979 Sigma-70 factor, region 1.1 ND439_13440 PF04546 Sigma-70, non-essential region ND439_13495 PF08241 Methyltransferase domain ND439_13500 PF00535 Glycosyl transferase family 2 ND439_13520 PF04829 Pre-toxin domain with VENN motif ND439_13520 PF13018 Extended Signal Peptide of Type V secretion system ND439_13520 PF13332 Hemagglutinin repeat ND439_13520 PF05860 haemagglutination activity domain ND439_13525 PF08479 POTRA domain, ShlB-type ND439_13525 PF17287 POTRA domain ND439_13525 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND439_13530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND439_13530 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_13535 PF05175 Methyltransferase small domain ND439_13545 PF01863 Protein of unknown function DUF45 ND439_13550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND439_13555 PF03741 Integral membrane protein TerC family ND439_13560 PF00375 Sodium:dicarboxylate symporter family ND439_13565 PF10688 Bacterial inner membrane protein ND439_13570 PF08666 SAF domain ND439_13570 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND439_13575 PF01232 Mannitol dehydrogenase Rossmann domain ND439_13575 PF08125 Mannitol dehydrogenase C-terminal domain ND439_13580 PF02614 Glucuronate isomerase ND439_13585 PF07690 Major Facilitator Superfamily ND439_13590 PF00392 Bacterial regulatory proteins, gntR family ND439_13590 PF07729 FCD domain ND439_13600 PF09335 SNARE associated Golgi protein ND439_13605 PF13721 SecD export protein N-terminal TM region ND439_13615 PF05957 Bacterial protein of unknown function (DUF883) ND439_13620 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND439_13625 PF13997 YqjK-like protein ND439_13630 PF07681 DoxX ND439_13635 PF03466 LysR substrate binding domain ND439_13635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_13640 PF17954 Quercetinase C-terminal cupin domain ND439_13640 PF02678 Pirin ND439_13655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND439_13660 PF04348 LppC putative lipoprotein ND439_13665 PF02021 Uncharacterised protein family UPF0102 ND439_13670 PF13580 SIS domain ND439_13675 PF04972 BON domain ND439_13680 PF00912 Transglycosylase ND439_13690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_13690 PF00512 His Kinase A (phospho-acceptor) domain ND439_13690 PF01627 Hpt domain ND439_13690 PF00989 PAS fold ND439_13690 PF00072 Response regulator receiver domain ND439_13690 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND439_13700 PF04055 Radical SAM superfamily ND439_13700 PF16199 Radical_SAM C-terminal domain ND439_13705 PF01493 GXGXG motif ND439_13705 PF01645 Conserved region in glutamate synthase ND439_13705 PF04898 Glutamate synthase central domain ND439_13705 PF00310 Glutamine amidotransferases class-II ND439_13710 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_13710 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND439_13720 PF04386 Stringent starvation protein B ND439_13725 PF02798 Glutathione S-transferase, N-terminal domain ND439_13725 PF00043 Glutathione S-transferase, C-terminal domain ND439_13730 PF00380 Ribosomal protein S9/S16 ND439_13735 PF00572 Ribosomal protein L13 ND439_13740 PF03969 AFG1-like ATPase ND439_13745 PF06295 Protein of unknown function (DUF1043) ND439_13750 PF00595 PDZ domain ND439_13750 PF13180 PDZ domain ND439_13755 PF13180 PDZ domain ND439_13760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND439_13765 PF01722 BolA-like protein ND439_13770 PF13466 STAS domain ND439_13775 PF05494 MlaC protein ND439_13780 PF02470 MlaD protein ND439_13785 PF02405 Permease MlaE ND439_13790 PF00005 ABC transporter ND439_13795 PF01699 Sodium/calcium exchanger protein ND439_13800 PF00571 CBS domain ND439_13800 PF01380 SIS domain ND439_13810 PF06835 Lipopolysaccharide-assembly, LptC-related ND439_13815 PF03968 OstA-like protein ND439_13820 PF00005 ABC transporter ND439_13820 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND439_13825 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND439_13825 PF04963 Sigma-54 factor, core binding domain ND439_13825 PF04552 Sigma-54, DNA binding domain ND439_13830 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND439_13835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND439_13840 PF03668 P-loop ATPase protein family ND439_13845 PF00381 PTS HPr component phosphorylation site ND439_13850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND439_13850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND439_13855 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND439_13855 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND439_13860 PF01042 Endoribonuclease L-PSP ND439_13865 PF00128 Alpha amylase, catalytic domain ND439_13865 PF11941 Domain of unknown function (DUF3459) ND439_13870 PF02378 Phosphotransferase system, EIIC ND439_13870 PF00367 phosphotransferase system, EIIB ND439_13875 PF00356 Bacterial regulatory proteins, lacI family ND439_13880 PF00689 Cation transporting ATPase, C-terminus ND439_13880 PF00690 Cation transporter/ATPase, N-terminus ND439_13890 PF01272 Transcription elongation factor, GreA/GreB, C-term ND439_13890 PF14760 Rnk N-terminus ND439_13895 PF07361 Cytochrome b562 ND439_13900 PF01523 Putative modulator of DNA gyrase ND439_13905 PF04751 Protein of unknown function (DUF615) ND439_13910 PF01337 Barstar (barnase inhibitor) ND439_13915 PF00545 ribonuclease ND439_13920 PF00171 Aldehyde dehydrogenase family ND439_13925 PF04632 Fusaric acid resistance protein family ND439_13930 PF13533 Biotin-lipoyl like ND439_13935 PF07869 Protein of unknown function (DUF1656) ND439_13940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_13940 PF03466 LysR substrate binding domain ND439_13945 PF01523 Putative modulator of DNA gyrase ND439_13950 PF00795 Carbon-nitrogen hydrolase ND439_13955 PF13116 Protein of unknown function ND439_13955 PF13502 AsmA-like C-terminal region ND439_13960 PF10150 Ribonuclease E/G family ND439_13960 PF00575 S1 RNA binding domain ND439_13965 PF02545 Maf-like protein ND439_13970 PF04093 rod shape-determining protein MreD ND439_13975 PF04085 rod shape-determining protein MreC ND439_13985 PF00563 EAL domain ND439_13985 PF17157 Gammaproteobacterial periplasmic sensor domain ND439_13985 PF00990 Diguanylate cyclase, GGDEF domain ND439_13990 PF00107 Zinc-binding dehydrogenase ND439_13990 PF08240 Alcohol dehydrogenase GroES-like domain ND439_13995 PF00174 Oxidoreductase molybdopterin binding domain ND439_14000 PF01794 Ferric reductase like transmembrane component ND439_14005 PF01220 Dehydroquinase class II ND439_14010 PF00364 Biotin-requiring enzyme ND439_14015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND439_14015 PF02785 Biotin carboxylase C-terminal domain ND439_14015 PF00289 Biotin carboxylase, N-terminal domain ND439_14020 PF06196 Protein of unknown function (DUF997) ND439_14025 PF00474 Sodium:solute symporter family ND439_14035 PF01207 Dihydrouridine synthase (Dus) ND439_14040 PF02954 Bacterial regulatory protein, Fis family ND439_14050 PF03279 Bacterial lipid A biosynthesis acyltransferase ND439_14055 PF00484 Carbonic anhydrase ND439_14060 PF04172 LrgB-like family ND439_14065 PF03788 LrgA family ND439_14070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_14070 PF03466 LysR substrate binding domain ND439_14075 PF00999 Sodium/hydrogen exchanger family ND439_14080 PF00860 Permease family ND439_14090 PF00436 Single-strand binding protein family ND439_14095 PF17760 UvrA interaction domain ND439_14095 PF00005 ABC transporter ND439_14095 PF17755 UvrA DNA-binding domain ND439_14100 PF04237 YjbR ND439_14105 PF00155 Aminotransferase class I and II ND439_14110 PF00842 Alanine racemase, C-terminal domain ND439_14110 PF01168 Alanine racemase, N-terminal domain ND439_14115 PF00772 DnaB-like helicase N terminal domain ND439_14115 PF03796 DnaB-like helicase C terminal domain ND439_14120 PF00107 Zinc-binding dehydrogenase ND439_14120 PF08240 Alcohol dehydrogenase GroES-like domain ND439_14125 PF09583 Phage shock protein G (Phageshock_PspG) ND439_14130 PF01207 Dihydrouridine synthase (Dus) ND439_14135 PF01475 Ferric uptake regulator family ND439_14140 PF01726 LexA DNA binding domain ND439_14140 PF00717 Peptidase S24-like ND439_14145 PF01219 Prokaryotic diacylglycerol kinase ND439_14150 PF01553 Acyltransferase ND439_14155 PF01040 UbiA prenyltransferase family ND439_14160 PF04345 Chorismate lyase ND439_14165 PF07148 Maltose operon periplasmic protein precursor (MalM) ND439_14170 PF02264 LamB porin ND439_14175 PF00005 ABC transporter ND439_14175 PF17912 MalK OB fold domain ND439_14185 PF01547 Bacterial extracellular solute-binding protein ND439_14190 PF00528 Binding-protein-dependent transport system inner membrane component ND439_14190 PF14785 Maltose transport system permease protein MalF P2 domain ND439_14195 PF00528 Binding-protein-dependent transport system inner membrane component ND439_14200 PF06146 Phosphate-starvation-inducible E ND439_14205 PF00342 Phosphoglucose isomerase ND439_14210 PF00696 Amino acid kinase family ND439_14210 PF01842 ACT domain ND439_14215 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND439_14215 PF17287 POTRA domain ND439_14215 PF08479 POTRA domain, ShlB-type ND439_14220 PF13332 Hemagglutinin repeat ND439_14220 PF05860 haemagglutination activity domain ND439_14230 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND439_14240 PF17758 Proteasomal ATPase OB N-terminal domain ND439_14240 PF16450 Proteasomal ATPase OB C-terminal domain ND439_14240 PF00004 ATPase family associated with various cellular activities (AAA) ND439_14320 PF03466 LysR substrate binding domain ND439_14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_14330 PF02607 B12 binding domain ND439_14330 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND439_14330 PF00809 Pterin binding enzyme ND439_14330 PF02574 Homocysteine S-methyltransferase ND439_14330 PF02310 B12 binding domain ND439_14335 PF09339 IclR helix-turn-helix domain ND439_14335 PF01614 Bacterial transcriptional regulator ND439_14340 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND439_14345 PF00463 Isocitrate lyase family ND439_14350 PF01274 Malate synthase ND439_14355 PF04204 Homoserine O-succinyltransferase ND439_14395 PF01808 AICARFT/IMPCHase bienzyme ND439_14395 PF02142 MGS-like domain ND439_14400 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND439_14400 PF02843 Phosphoribosylglycinamide synthetase, C domain ND439_14400 PF02844 Phosphoribosylglycinamide synthetase, N domain ND439_14405 PF07356 Protein of unknown function (DUF1481) ND439_14410 PF00216 Bacterial DNA-binding protein ND439_14415 PF04222 Protein of unknown function (DUF416) ND439_14420 PF04493 Endonuclease V ND439_14425 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND439_14430 PF09297 NADH pyrophosphatase zinc ribbon domain ND439_14430 PF00293 NUDIX domain ND439_14435 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND439_14440 PF01964 Radical SAM ThiC family ND439_14440 PF13667 ThiC-associated domain ND439_14445 PF02581 Thiamine monophosphate synthase ND439_14450 PF00899 ThiF family ND439_14455 PF02597 ThiS family ND439_14460 PF05690 Thiazole biosynthesis protein ThiG ND439_14465 PF06968 Biotin and Thiamin Synthesis associated domain ND439_14465 PF04055 Radical SAM superfamily ND439_14470 PF04983 RNA polymerase Rpb1, domain 3 ND439_14470 PF00623 RNA polymerase Rpb1, domain 2 ND439_14470 PF04997 RNA polymerase Rpb1, domain 1 ND439_14470 PF04998 RNA polymerase Rpb1, domain 5 ND439_14470 PF05000 RNA polymerase Rpb1, domain 4 ND439_14475 PF04563 RNA polymerase beta subunit ND439_14475 PF04561 RNA polymerase Rpb2, domain 2 ND439_14475 PF04565 RNA polymerase Rpb2, domain 3 ND439_14475 PF10385 RNA polymerase beta subunit external 1 domain ND439_14475 PF04560 RNA polymerase Rpb2, domain 7 ND439_14475 PF00562 RNA polymerase Rpb2, domain 6 ND439_14480 PF00542 Ribosomal protein L7/L12 C-terminal domain ND439_14480 PF16320 Ribosomal protein L7/L12 dimerisation domain ND439_14485 PF00466 Ribosomal protein L10 ND439_14490 PF00687 Ribosomal protein L1p/L10e family ND439_14495 PF03946 Ribosomal protein L11, N-terminal domain ND439_14495 PF00298 Ribosomal protein L11, RNA binding domain ND439_14500 PF02357 Transcription termination factor nusG ND439_14500 PF00467 KOW motif ND439_14505 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND439_14510 PF03143 Elongation factor Tu C-terminal domain ND439_14510 PF03144 Elongation factor Tu domain 2 ND439_14510 PF00009 Elongation factor Tu GTP binding domain ND439_14535 PF00485 Phosphoribulokinase / Uridine kinase family ND439_14540 PF03099 Biotin/lipoate A/B protein ligase family ND439_14540 PF08279 HTH domain ND439_14540 PF02237 Biotin protein ligase C terminal domain ND439_14545 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND439_14545 PF01565 FAD binding domain ND439_14570 PF12724 Flavodoxin domain ND439_14575 PF02386 Cation transport protein ND439_14580 PF09186 Domain of unknown function (DUF1949) ND439_14580 PF01205 Uncharacterized protein family UPF0029 ND439_14585 PF00557 Metallopeptidase family M24 ND439_14590 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND439_14590 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND439_14590 PF00378 Enoyl-CoA hydratase/isomerase ND439_14595 PF02803 Thiolase, C-terminal domain ND439_14595 PF00108 Thiolase, N-terminal domain ND439_14600 PF00175 Oxidoreductase NAD-binding domain ND439_14600 PF00970 Oxidoreductase FAD-binding domain ND439_14605 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND439_14615 PF02357 Transcription termination factor nusG ND439_14620 PF00490 Delta-aminolevulinic acid dehydratase ND439_14625 PF01026 TatD related DNase ND439_14640 PF02416 mttA/Hcf106 family ND439_14645 PF03109 ABC1 family ND439_14650 PF02036 SCP-2 sterol transfer family ND439_14655 PF01209 ubiE/COQ5 methyltransferase family ND439_14660 PF02646 RmuC family ND439_14665 PF09335 SNARE associated Golgi protein ND439_14670 PF13722 5TM C-terminal transporter carbon starvation CstA ND439_14670 PF02554 Carbon starvation protein CstA ND439_14680 PF01048 Phosphorylase superfamily ND439_14685 PF01738 Dienelactone hydrolase family ND439_14690 PF08267 Cobalamin-independent synthase, N-terminal domain ND439_14690 PF01717 Cobalamin-independent synthase, Catalytic domain ND439_14695 PF03466 LysR substrate binding domain ND439_14695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_14700 PF00892 EamA-like transporter family ND439_14710 PF03009 Glycerophosphoryl diester phosphodiesterase family ND439_14715 PF00005 ABC transporter ND439_14715 PF17912 MalK OB fold domain ND439_14720 PF00528 Binding-protein-dependent transport system inner membrane component ND439_14725 PF00528 Binding-protein-dependent transport system inner membrane component ND439_14730 PF13416 Bacterial extracellular solute-binding protein ND439_14765 PF00005 ABC transporter ND439_14770 PF00005 ABC transporter ND439_14770 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND439_14775 PF02653 Branched-chain amino acid transport system / permease component ND439_14775 PF11862 Domain of unknown function (DUF3382) ND439_14780 PF02653 Branched-chain amino acid transport system / permease component ND439_14785 PF13458 Periplasmic binding protein ND439_14790 PF12568 Acetyltransferase (GNAT) domain, PanZ ND439_14795 PF02595 Glycerate kinase family ND439_14800 PF02447 GntP family permease ND439_14805 PF05651 Putative sugar diacid recognition ND439_14805 PF17853 GGDEF-like domain ND439_14805 PF13556 PucR C-terminal helix-turn-helix domain ND439_14810 PF00140 Sigma-70 factor, region 1.2 ND439_14810 PF04542 Sigma-70 region 2 ND439_14810 PF04545 Sigma-70, region 4 ND439_14815 PF18075 FtsX extracellular domain ND439_14815 PF02687 FtsX-like permease family ND439_14820 PF00005 ABC transporter ND439_14825 PF02881 SRP54-type protein, helical bundle domain ND439_14825 PF00448 SRP54-type protein, GTPase domain ND439_14825 PF02881 SRP54-type protein, helical bundle domain ND439_14825 PF00448 SRP54-type protein, GTPase domain ND439_14835 PF06611 Protein of unknown function (DUF1145) ND439_14850 PF07947 YhhN family ND439_14855 PF00403 Heavy-metal-associated domain ND439_14860 PF01206 Sulfurtransferase TusA ND439_14865 PF02592 Putative vitamin uptake transporter ND439_14870 PF08786 DcrB ND439_14875 PF13183 4Fe-4S dicluster domain ND439_14875 PF02754 Cysteine-rich domain ND439_14880 PF00890 FAD binding domain ND439_14885 PF01266 FAD dependent oxidoreductase ND439_14885 PF04324 BFD-like [2Fe-2S] binding domain ND439_14895 PF07690 Major Facilitator Superfamily ND439_14900 PF03009 Glycerophosphoryl diester phosphodiesterase family ND439_14910 PF12146 Serine aminopeptidase, S33 ND439_14915 PF01810 LysE type translocator ND439_14920 PF00570 HRDC domain ND439_14920 PF16124 RecQ zinc-binding ND439_14920 PF09382 RQC domain ND439_14920 PF00270 DEAD/DEAH box helicase ND439_14920 PF00271 Helicase conserved C-terminal domain ND439_14925 PF02253 Phospholipase A1 ND439_14930 PF03061 Thioesterase superfamily ND439_14935 PF00892 EamA-like transporter family ND439_14940 PF01544 CorA-like Mg2+ transporter protein ND439_14950 PF09370 Phosphoenolpyruvate hydrolase-like ND439_14965 PF00580 UvrD/REP helicase N-terminal domain ND439_14965 PF13361 UvrD-like helicase C-terminal domain ND439_14970 PF13419 Haloacid dehalogenase-like hydrolase ND439_14975 PF02899 Phage integrase, N-terminal SAM-like domain ND439_14975 PF00589 Phage integrase family ND439_14980 PF04340 Protein of unknown function, DUF484 ND439_14985 PF01678 Diaminopimelate epimerase ND439_14990 PF13627 Prokaryotic lipoprotein-attachment site ND439_14995 PF01491 Frataxin-like domain ND439_15000 PF01295 Adenylate cyclase, class-I ND439_15000 PF12633 Adenylate cyclase NT domain ND439_15005 PF03900 Porphobilinogen deaminase, C-terminal domain ND439_15005 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND439_15010 PF02602 Uroporphyrinogen-III synthase HemD ND439_15015 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND439_15020 PF07719 Tetratricopeptide repeat ND439_15020 PF07219 HemY protein N-terminus ND439_15050 PF00324 Amino acid permease ND439_15055 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND439_15060 PF06899 WzyE protein, O-antigen assembly polymerase ND439_15065 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND439_15070 PF01943 Polysaccharide biosynthesis protein ND439_15075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND439_15085 PF00483 Nucleotidyl transferase ND439_15090 PF16363 GDP-mannose 4,6 dehydratase ND439_15095 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND439_15095 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND439_15095 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND439_15100 PF02350 UDP-N-acetylglucosamine 2-epimerase ND439_15105 PF02706 Chain length determinant protein ND439_15110 PF00953 Glycosyl transferase family 4 ND439_15115 PF07497 Rho termination factor, RNA-binding domain ND439_15115 PF07498 Rho termination factor, N-terminal domain ND439_15115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND439_15120 PF00085 Thioredoxin ND439_15125 PF00271 Helicase conserved C-terminal domain ND439_15125 PF00270 DEAD/DEAH box helicase ND439_15130 PF02541 Ppx/GppA phosphatase family ND439_15135 PF00580 UvrD/REP helicase N-terminal domain ND439_15135 PF13361 UvrD-like helicase C-terminal domain ND439_15145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND439_15145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND439_15150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_15150 PF03466 LysR substrate binding domain ND439_15155 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND439_15155 PF18416 N-acetylglucosamine binding protein domain 2 ND439_15160 PF00291 Pyridoxal-phosphate dependent enzyme ND439_15160 PF00585 C-terminal regulatory domain of Threonine dehydratase ND439_15165 PF00920 Dehydratase family ND439_15170 PF01063 Amino-transferase class IV ND439_15180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND439_15180 PF00205 Thiamine pyrophosphate enzyme, central domain ND439_15180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND439_15185 PF08046 IlvGEDA operon leader peptide ND439_15190 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND439_15190 PF01078 Magnesium chelatase, subunit ChlI ND439_15195 PF04219 Protein of unknown function, DUF ND439_15200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_15200 PF03466 LysR substrate binding domain ND439_15255 PF01177 Asp/Glu/Hydantoin racemase ND439_15260 PF07715 TonB-dependent Receptor Plug Domain ND439_15260 PF00593 TonB dependent receptor ND439_15265 PF05958 tRNA (Uracil-5-)-methyltransferase ND439_15270 PF07226 Protein of unknown function (DUF1422) ND439_15275 PF00440 Bacterial regulatory proteins, tetR family ND439_15280 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_15280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND439_15285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_15285 PF03466 LysR substrate binding domain ND439_15290 PF00462 Glutaredoxin ND439_15290 PF08534 Redoxin ND439_15295 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND439_15295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND439_15315 PF00529 HlyD membrane-fusion protein of T1SS ND439_15320 PF00664 ABC transporter transmembrane region ND439_15320 PF00005 ABC transporter ND439_15335 PF14698 Argininosuccinate lyase C-terminal ND439_15335 PF00206 Lyase ND439_15340 PF00764 Arginosuccinate synthase ND439_15345 PF00696 Amino acid kinase family ND439_15350 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND439_15350 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND439_15355 PF07687 Peptidase dimerisation domain ND439_15355 PF01546 Peptidase family M20/M25/M40 ND439_15360 PF00311 Phosphoenolpyruvate carboxylase ND439_15375 PF02219 Methylenetetrahydrofolate reductase ND439_15395 PF00696 Amino acid kinase family ND439_15395 PF00742 Homoserine dehydrogenase ND439_15395 PF03447 Homoserine dehydrogenase, NAD binding domain ND439_15400 PF01053 Cys/Met metabolism PLP-dependent enzyme ND439_15405 PF01340 Met Apo-repressor, MetJ ND439_15410 PF01197 Ribosomal protein L31 ND439_15415 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND439_15415 PF18074 Primosomal protein N C-terminal domain ND439_15415 PF17764 3′ DNA-binding domain (3′BD) ND439_15415 PF00271 Helicase conserved C-terminal domain ND439_15415 PF00270 DEAD/DEAH box helicase ND439_15420 PF00356 Bacterial regulatory proteins, lacI family ND439_15425 PF05036 Sporulation related domain ND439_15430 PF00227 Proteasome subunit ND439_15435 PF07724 AAA domain (Cdc48 subfamily) ND439_15435 PF10431 C-terminal, D2-small domain, of ClpB protein ND439_15435 PF00004 ATPase family associated with various cellular activities (AAA) ND439_15440 PF01040 UbiA prenyltransferase family ND439_15445 PF03737 Aldolase/RraA ND439_15450 PF06005 Cell division protein ZapB ND439_15455 PF00230 Major intrinsic protein ND439_15460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND439_15460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND439_15465 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND439_15470 PF07690 Major Facilitator Superfamily ND439_15475 PF00175 Oxidoreductase NAD-binding domain ND439_15475 PF00970 Oxidoreductase FAD-binding domain ND439_15480 PF05656 Protein of unknown function (DUF805) ND439_15485 PF07305 Protein of unknown function (DUF1454) ND439_15490 PF00121 Triosephosphate isomerase ND439_15500 PF00365 Phosphofructokinase ND439_15505 PF16916 Dimerisation domain of Zinc Transporter ND439_15505 PF01545 Cation efflux family ND439_15510 PF07813 LTXXQ motif family protein ND439_15515 PF00072 Response regulator receiver domain ND439_15515 PF00486 Transcriptional regulatory protein, C terminal ND439_15520 PF00512 His Kinase A (phospho-acceptor) domain ND439_15520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_15520 PF00672 HAMP domain ND439_15520 PF16527 Two-component sensor protein CpxA, periplasmic domain ND439_15525 PF00588 SpoU rRNA Methylase family ND439_15530 PF06426 Serine acetyltransferase, N-terminal ND439_15530 PF00132 Bacterial transferase hexapeptide (six repeats) ND439_15535 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND439_15535 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND439_15540 PF02556 Preprotein translocase subunit SecB ND439_15545 PF00462 Glutaredoxin ND439_15550 PF00581 Rhodanese-like domain ND439_15555 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND439_15555 PF01676 Metalloenzyme superfamily ND439_15560 PF01551 Peptidase family M23 ND439_15565 PF04748 Divergent polysaccharide deacetylase ND439_15570 PF00107 Zinc-binding dehydrogenase ND439_15570 PF08240 Alcohol dehydrogenase GroES-like domain ND439_15575 PF00155 Aminotransferase class I and II ND439_15580 PF01370 NAD dependent epimerase/dehydratase family ND439_15585 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND439_15590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND439_15595 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND439_15600 PF00535 Glycosyl transferase family 2 ND439_15605 PF01467 Cytidylyltransferase-like ND439_15610 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND439_15610 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND439_15610 PF06827 Zinc finger found in FPG and IleRS ND439_15615 PF00471 Ribosomal protein L33 ND439_15620 PF00830 Ribosomal L28 family ND439_15625 PF04002 RadC-like JAB domain ND439_15630 PF02441 Flavoprotein ND439_15630 PF04127 DNA / pantothenate metabolism flavoprotein ND439_15635 PF00692 dUTPase ND439_15640 PF00440 Bacterial regulatory proteins, tetR family ND439_15645 PF00156 Phosphoribosyl transferase domain ND439_15650 PF01138 3' exoribonuclease family, domain 1 ND439_15650 PF03725 3' exoribonuclease family, domain 2 ND439_15655 PF08340 Domain of unknown function (DUF1732) ND439_15655 PF03755 YicC-like family, N-terminal region ND439_15690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND439_15690 PF03466 LysR substrate binding domain ND439_15695 PF00990 Diguanylate cyclase, GGDEF domain ND439_15695 PF13426 PAS domain ND439_15695 PF00563 EAL domain ND439_15700 PF00378 Enoyl-CoA hydratase/isomerase ND439_15705 PF07670 Nucleoside recognition ND439_15705 PF07662 Na+ dependent nucleoside transporter C-terminus ND439_15705 PF01773 Na+ dependent nucleoside transporter N-terminus ND439_15715 PF03458 UPF0126 domain ND439_15720 PF03120 NAD-dependent DNA ligase OB-fold domain ND439_15720 PF01653 NAD-dependent DNA ligase adenylation domain ND439_15725 PF00625 Guanylate kinase ND439_15730 PF01192 RNA polymerase Rpb6 ND439_15735 PF02824 TGS domain ND439_15735 PF04607 Region found in RelA / SpoT proteins ND439_15735 PF13291 ACT domain ND439_15740 PF12105 SpoU, rRNA methylase, C-terminal ND439_15740 PF00588 SpoU rRNA Methylase family ND439_15745 PF00270 DEAD/DEAH box helicase ND439_15745 PF00271 Helicase conserved C-terminal domain ND439_15745 PF17191 RecG wedge domain ND439_15750 PF03616 Sodium/glutamate symporter ND439_15755 PF00860 Permease family ND439_15760 PF05170 AsmA family ND439_15765 PF09500 Putative thioesterase (yiiD_Cterm) ND439_15765 PF00583 Acetyltransferase (GNAT) family ND439_15770 PF02580 D-Tyr-tRNA(Tyr) deacylase ND439_15775 PF03631 Virulence factor BrkB ND439_15780 PF13419 Haloacid dehalogenase-like hydrolase ND439_15785 PF03144 Elongation factor Tu domain 2 ND439_15785 PF00009 Elongation factor Tu GTP binding domain ND439_15785 PF00679 Elongation factor G C-terminus ND439_15790 PF03951 Glutamine synthetase, beta-Grasp domain ND439_15790 PF00120 Glutamine synthetase, catalytic domain ND439_15795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND439_15795 PF00512 His Kinase A (phospho-acceptor) domain ND439_15795 PF00989 PAS fold ND439_15800 PF02954 Bacterial regulatory protein, Fis family ND439_15800 PF00072 Response regulator receiver domain ND439_15800 PF00158 Sigma-54 interaction domain ND439_15805 PF06969 HemN C-terminal domain ND439_15805 PF04055 Radical SAM superfamily ND439_15810 PF04220 Der GTPase activator (YihI) ND439_15815 PF01926 50S ribosome-binding GTPase ND439_15820 PF01612 3'-5' exonuclease ND439_15820 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND439_15820 PF01367 5'-3' exonuclease, C-terminal SAM fold ND439_15820 PF00476 DNA polymerase family A ND439_15825 PF01323 DSBA-like thioredoxin domain ND439_15830 PF01636 Phosphotransferase enzyme family ND439_15835 PF06288 Protein of unknown function (DUF1040) ND439_15840 PF12804 MobA-like NTP transferase domain ND439_15845 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND439_15870 PF00392 Bacterial regulatory proteins, gntR family ND439_15870 PF07729 FCD domain ND439_15875 PF00356 Bacterial regulatory proteins, lacI family ND439_15880 PF00294 pfkB family carbohydrate kinase ND439_15885 PF13407 Periplasmic binding protein domain ND439_15890 PF02653 Branched-chain amino acid transport system / permease component ND439_15895 PF00005 ABC transporter ND439_15900 PF05025 RbsD / FucU transport protein family ND439_15905 PF02705 K+ potassium transporter ND439_15910 PF07728 AAA domain (dynein-related subfamily) ND439_15910 PF12592 Protein of unknown function (DUF3763) ND439_15910 PF17868 AAA lid domain ND439_15915 PF05762 VWA domain containing CoxE-like protein ND439_15925 PF03590 Aspartate-ammonia ligase ND439_15930 PF01037 Lrp/AsnC ligand binding domain ND439_15935 PF00258 Flavodoxin ND439_15940 PF01134 Glucose inhibited division protein A ND439_15940 PF13932 GidA associated domain ND439_15945 PF02527 rRNA small subunit methyltransferase G ND439_15950 PF03899 ATP synthase I chain ND439_15955 PF00119 ATP synthase A chain ND439_15960 PF00137 ATP synthase subunit C ND439_15965 PF00430 ATP synthase B/B' CF(0) ND439_15970 PF00213 ATP synthase delta (OSCP) subunit ND439_15975 PF00306 ATP synthase alpha/beta chain, C terminal domain ND439_15975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND439_15975 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND439_15980 PF00231 ATP synthase ND439_15985 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND439_15985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND439_15990 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND439_15990 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND439_15995 PF00132 Bacterial transferase hexapeptide (six repeats) ND439_15995 PF12804 MobA-like NTP transferase domain ND439_16000 PF01380 SIS domain ND439_16005 PF12849 PBP superfamily domain ND439_16010 PF00528 Binding-protein-dependent transport system inner membrane component ND439_16015 PF00528 Binding-protein-dependent transport system inner membrane component ND439_16020 PF00005 ABC transporter ND439_16025 PF01895 PhoU domain ND439_16030 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND439_16035 PF00528 Binding-protein-dependent transport system inner membrane component ND439_16040 PF00528 Binding-protein-dependent transport system inner membrane component ND439_16045 PF00860 Permease family ND439_16050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND439_16050 PF02203 Tar ligand binding domain homologue ND439_16050 PF00672 HAMP domain ND439_16060 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND439_16060 PF02753 Pili assembly chaperone PapD, C-terminal domain ND439_16065 PF00577 Outer membrane usher protein ND439_16065 PF13953 PapC C-terminal domain ND439_16065 PF13954 PapC N-terminal domain ND439_16075 PF01926 50S ribosome-binding GTPase ND439_16075 PF12631 MnmE helical domain ND439_16075 PF10396 GTP-binding protein TrmE N-terminus ND439_16080 PF02096 60Kd inner membrane protein ND439_16080 PF14849 YidC periplasmic domain ND439_16085 PF01809 Putative membrane protein insertion efficiency factor ND439_16090 PF00825 Ribonuclease P ND439_16095 PF00468 Ribosomal protein L34