locus-tag class description LNQ41_000005 PF00308 Bacterial dnaA protein LNQ41_000005 PF08299 Bacterial dnaA protein helix-turn-helix LNQ41_000005 PF11638 DnaA N-terminal domain LNQ41_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain LNQ41_000010 PF02767 DNA polymerase III beta subunit, central domain LNQ41_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain LNQ41_000015 PF02463 RecF/RecN/SMC N terminal domain LNQ41_000020 PF01751 Toprim domain LNQ41_000020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_000020 PF00986 DNA gyrase B subunit, carboxyl terminus LNQ41_000020 PF00204 DNA gyrase B LNQ41_000020 PF18053 DNA gyrase B subunit insert domain LNQ41_000030 PF12566 Protein of unknown function (DUF3748) LNQ41_000030 PF07676 WD40-like Beta Propeller Repeat LNQ41_000035 PF07119 Protein of unknown function (DUF1375) LNQ41_000040 PF00011 Hsp20/alpha crystallin family LNQ41_000045 PF00011 Hsp20/alpha crystallin family LNQ41_000050 PF02080 TrkA-C domain LNQ41_000050 PF06826 Predicted Permease Membrane Region LNQ41_000055 PF00155 Aminotransferase class I and II LNQ41_000060 PF13488 Glycine zipper LNQ41_000060 PF00691 OmpA family LNQ41_000080 PF03352 Methyladenine glycosylase LNQ41_000090 PF02091 Glycyl-tRNA synthetase alpha subunit LNQ41_000095 PF05746 DALR anticodon binding domain LNQ41_000095 PF02092 Glycyl-tRNA synthetase beta subunit LNQ41_000100 PF11254 Protein of unknown function (DUF3053) LNQ41_000130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ41_000130 PF02378 Phosphotransferase system, EIIC LNQ41_000130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ41_000135 PF01232 Mannitol dehydrogenase Rossmann domain LNQ41_000135 PF08125 Mannitol dehydrogenase C-terminal domain LNQ41_000140 PF05068 Mannitol repressor LNQ41_000145 PF10928 Protein of unknown function (DUF2810) LNQ41_000150 PF03473 MOSC domain LNQ41_000150 PF03475 3-alpha domain LNQ41_000155 PF02203 Tar ligand binding domain homologue LNQ41_000155 PF00672 HAMP domain LNQ41_000155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ41_000160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNQ41_000160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNQ41_000165 PF02634 FdhD/NarQ family LNQ41_000175 PF09163 Formate dehydrogenase N, transmembrane LNQ41_000175 PF13247 4Fe-4S dicluster domain LNQ41_000180 PF01292 Prokaryotic cytochrome b561 LNQ41_000185 PF04216 Protein involved in formate dehydrogenase formation LNQ41_000190 PF12390 Selenocysteine synthase N terminal LNQ41_000190 PF03841 L-seryl-tRNA selenium transferase LNQ41_000195 PF03144 Elongation factor Tu domain 2 LNQ41_000195 PF00009 Elongation factor Tu GTP binding domain LNQ41_000195 PF09107 Elongation factor SelB, winged helix LNQ41_000195 PF09106 Elongation factor SelB, winged helix LNQ41_000200 PF01427 D-ala-D-ala dipeptidase LNQ41_000205 PF07690 Major Facilitator Superfamily LNQ41_000210 PF01757 Acyltransferase family LNQ41_000245 PF01175 Urocanase Rossmann-like domain LNQ41_000245 PF17392 Urocanase C-terminal domain LNQ41_000245 PF17391 Urocanase N-terminal domain LNQ41_000250 PF00221 Aromatic amino acid lyase LNQ41_000255 PF00324 Amino acid permease LNQ41_000265 PF12146 Serine aminopeptidase, S33 LNQ41_000270 PF00884 Sulfatase LNQ41_000270 PF08019 Phosphoethanolamine transferase EptA/EptB LNQ41_000275 PF00196 Bacterial regulatory proteins, luxR family LNQ41_000275 PF00072 Response regulator receiver domain LNQ41_000280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_000280 PF07730 Histidine kinase LNQ41_000280 PF05231 MASE1 LNQ41_000285 PF07690 Major Facilitator Superfamily LNQ41_000295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ41_000300 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_000305 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_000305 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ41_000310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ41_000310 PF00005 ABC transporter LNQ41_000315 PF00005 ABC transporter LNQ41_000315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ41_000320 PF11658 Cellulose biosynthesis protein BcsG LNQ41_000325 PF11120 Cellulose biosynthesis protein BcsF LNQ41_000330 PF10995 Cellulose biosynthesis GIL LNQ41_000340 PF06564 Cellulose biosynthesis protein BcsQ LNQ41_000345 PF07238 PilZ domain LNQ41_000345 PF00535 Glycosyl transferase family 2 LNQ41_000345 PF03552 Cellulose synthase LNQ41_000350 PF03170 Bacterial cellulose synthase subunit LNQ41_000355 PF01270 Glycosyl hydrolases family 8 LNQ41_000360 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LNQ41_000365 PF17154 Gammaproteobacterial periplasmic sensor domain LNQ41_000365 PF00563 EAL domain LNQ41_000365 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_000365 PF00672 HAMP domain LNQ41_000370 PF00375 Sodium:dicarboxylate symporter family LNQ41_000375 PF05193 Peptidase M16 inactive domain LNQ41_000375 PF00675 Insulinase (Peptidase family M16) LNQ41_000380 PF00294 pfkB family carbohydrate kinase LNQ41_000385 PF01361 Tautomerase enzyme LNQ41_000390 PF00563 EAL domain LNQ41_000395 PF02611 CDP-diacylglycerol pyrophosphatase LNQ41_000400 PF03631 Virulence factor BrkB LNQ41_000405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_000405 PF03466 LysR substrate binding domain LNQ41_000410 PF00375 Sodium:dicarboxylate symporter family LNQ41_000415 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ41_000420 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_000420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ41_000425 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LNQ41_000430 PF01432 Peptidase family M3 LNQ41_000435 PF04445 Putative SAM-dependent methyltransferase LNQ41_000440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LNQ41_000440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LNQ41_000445 PF00582 Universal stress protein family LNQ41_000450 PF10625 Universal stress protein B (UspB) LNQ41_000455 PF01384 Phosphate transporter family LNQ41_000465 PF01810 LysE type translocator LNQ41_000470 PF00583 Acetyltransferase (GNAT) family LNQ41_000480 PF02678 Pirin LNQ41_000480 PF17954 Quercetinase C-terminal cupin domain LNQ41_000485 PF00356 Bacterial regulatory proteins, lacI family LNQ41_000485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ41_000490 PF02447 GntP family permease LNQ41_000495 PF01202 Shikimate kinase LNQ41_000500 PF01914 MarC family integral membrane protein LNQ41_000505 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ41_000505 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ41_000510 PF06580 Histidine kinase LNQ41_000510 PF07694 5TMR of 5TMR-LYT LNQ41_000515 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNQ41_000515 PF00128 Alpha amylase, catalytic domain LNQ41_000515 PF02806 Alpha amylase, C-terminal all-beta domain LNQ41_000520 PF00128 Alpha amylase, catalytic domain LNQ41_000520 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNQ41_000520 PF18390 Glycogen debranching enzyme C-terminal domain LNQ41_000525 PF00483 Nucleotidyl transferase LNQ41_000530 PF00534 Glycosyl transferases group 1 LNQ41_000530 PF08323 Starch synthase catalytic domain LNQ41_000535 PF00343 Carbohydrate phosphorylase LNQ41_000540 PF01266 FAD dependent oxidoreductase LNQ41_000540 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LNQ41_000545 PF00455 DeoR C terminal sensor domain LNQ41_000545 PF08220 DeoR-like helix-turn-helix domain LNQ41_000550 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LNQ41_000550 PF01694 Rhomboid family LNQ41_000555 PF00581 Rhodanese-like domain LNQ41_000560 PF17874 MalT-like TPR region LNQ41_000560 PF00196 Bacterial regulatory proteins, luxR family LNQ41_000565 PF00343 Carbohydrate phosphorylase LNQ41_000570 PF02446 4-alpha-glucanotransferase LNQ41_000575 PF01106 NifU-like domain LNQ41_000575 PF01521 Iron-sulphur cluster biosynthesis LNQ41_000580 PF00156 Phosphoribosyl transferase domain LNQ41_000585 PF00561 alpha/beta hydrolase fold LNQ41_000595 PF09012 FeoC like transcriptional regulator LNQ41_000600 PF07664 Ferrous iron transport protein B C terminus LNQ41_000600 PF02421 Ferrous iron transport protein B LNQ41_000600 PF17910 FeoB cytosolic helical domain LNQ41_000600 PF07670 Nucleoside recognition LNQ41_000605 PF04023 FeoA domain LNQ41_000610 PF17674 HHH domain LNQ41_000610 PF00575 S1 RNA binding domain LNQ41_000610 PF09371 Tex-like protein N-terminal domain LNQ41_000610 PF16921 Tex protein YqgF-like domain LNQ41_000635 PF03449 Transcription elongation factor, N-terminal LNQ41_000635 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ41_000640 PF00486 Transcriptional regulatory protein, C terminal LNQ41_000640 PF00072 Response regulator receiver domain LNQ41_000645 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_000645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_000645 PF00672 HAMP domain LNQ41_000650 PF01293 Phosphoenolpyruvate carboxykinase LNQ41_000655 PF01430 Hsp33 protein LNQ41_000660 PF01479 S4 domain LNQ41_000665 PF13419 Haloacid dehalogenase-like hydrolase LNQ41_000670 PF07095 Intracellular growth attenuator protein IgaA LNQ41_000675 PF00293 NUDIX domain LNQ41_000680 PF00912 Transglycosylase LNQ41_000680 PF17092 Penicillin-binding protein OB-like domain LNQ41_000680 PF00905 Penicillin binding protein transpeptidase domain LNQ41_000705 PF00263 Bacterial type II and III secretion system protein LNQ41_000705 PF03958 Bacterial type II/III secretion system short domain LNQ41_000710 PF01202 Shikimate kinase LNQ41_000715 PF01761 3-dehydroquinate synthase LNQ41_000720 PF05036 Sporulation related domain LNQ41_000725 PF02086 D12 class N6 adenine-specific DNA methyltransferase LNQ41_000730 PF00834 Ribulose-phosphate 3 epimerase family LNQ41_000735 PF13419 Haloacid dehalogenase-like hydrolase LNQ41_000740 PF00579 tRNA synthetases class I (W and Y) LNQ41_000745 PF14824 Sirohaem biosynthesis protein central LNQ41_000745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ41_000745 PF10414 Sirohaem synthase dimerisation region LNQ41_000750 PF01226 Formate/nitrite transporter LNQ41_000755 PF13806 Rieske-like [2Fe-2S] domain LNQ41_000760 PF04324 BFD-like [2Fe-2S] binding domain LNQ41_000760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNQ41_000760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNQ41_000760 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_000760 PF18267 Rubredoxin NAD+ reductase C-terminal domain LNQ41_000765 PF07969 Amidohydrolase family LNQ41_000770 PF07690 Major Facilitator Superfamily LNQ41_000785 PF00356 Bacterial regulatory proteins, lacI family LNQ41_000790 PF11975 Family 4 glycosyl hydrolase C-terminal domain LNQ41_000790 PF02056 Family 4 glycosyl hydrolase LNQ41_000795 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LNQ41_000800 PF00117 Glutamine amidotransferase class-I LNQ41_000805 PF00202 Aminotransferase class-III LNQ41_000810 PF12805 FUSC-like inner membrane protein yccS LNQ41_000815 PF00027 Cyclic nucleotide-binding domain LNQ41_000815 PF13545 Crp-like helix-turn-helix domain LNQ41_000820 PF02566 OsmC-like protein LNQ41_000840 PF00156 Phosphoribosyl transferase domain LNQ41_000845 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_000850 PF00485 Phosphoribulokinase / Uridine kinase family LNQ41_000855 PF06794 Uncharacterised protein family (UPF0270) LNQ41_000860 PF00561 alpha/beta hydrolase fold LNQ41_000865 PF01810 LysE type translocator LNQ41_000870 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ41_000875 PF00535 Glycosyl transferase family 2 LNQ41_000880 PF00005 ABC transporter LNQ41_000880 PF12848 ABC transporter LNQ41_000885 PF02525 Flavodoxin-like fold LNQ41_000890 PF00999 Sodium/hydrogen exchanger family LNQ41_000890 PF02254 TrkA-N domain LNQ41_000895 PF09526 Probable metal-binding protein (DUF2387) LNQ41_000900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ41_000905 PF04102 SlyX LNQ41_000910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ41_000910 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LNQ41_000915 PF08348 YheO-like PAS domain LNQ41_000915 PF13309 HTH domain LNQ41_000920 PF02635 DsrE/DsrF-like family LNQ41_000925 PF02635 DsrE/DsrF-like family LNQ41_000930 PF04077 DsrH like protein LNQ41_000935 PF00164 Ribosomal protein S12/S23 LNQ41_000940 PF00177 Ribosomal protein S7p/S5e LNQ41_000945 PF14492 Elongation Factor G, domain II LNQ41_000945 PF03764 Elongation factor G, domain IV LNQ41_000945 PF00009 Elongation factor Tu GTP binding domain LNQ41_000945 PF03144 Elongation factor Tu domain 2 LNQ41_000945 PF00679 Elongation factor G C-terminus LNQ41_000950 PF03144 Elongation factor Tu domain 2 LNQ41_000950 PF00009 Elongation factor Tu GTP binding domain LNQ41_000950 PF03143 Elongation factor Tu C-terminal domain LNQ41_000955 PF04324 BFD-like [2Fe-2S] binding domain LNQ41_000960 PF00210 Ferritin-like domain LNQ41_000965 PF00338 Ribosomal protein S10p/S20e LNQ41_000970 PF00297 Ribosomal protein L3 LNQ41_000975 PF00573 Ribosomal protein L4/L1 family LNQ41_000980 PF00276 Ribosomal protein L23 LNQ41_000985 PF00181 Ribosomal Proteins L2, RNA binding domain LNQ41_000985 PF03947 Ribosomal Proteins L2, C-terminal domain LNQ41_000990 PF00203 Ribosomal protein S19 LNQ41_000995 PF00237 Ribosomal protein L22p/L17e LNQ41_001000 PF00189 Ribosomal protein S3, C-terminal domain LNQ41_001000 PF07650 KH domain LNQ41_001005 PF00252 Ribosomal protein L16p/L10e LNQ41_001010 PF00831 Ribosomal L29 protein LNQ41_001015 PF00366 Ribosomal protein S17 LNQ41_001020 PF00238 Ribosomal protein L14p/L23e LNQ41_001025 PF00467 KOW motif LNQ41_001025 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LNQ41_001030 PF00281 Ribosomal protein L5 LNQ41_001030 PF00673 ribosomal L5P family C-terminus LNQ41_001035 PF00253 Ribosomal protein S14p/S29e LNQ41_001040 PF00410 Ribosomal protein S8 LNQ41_001045 PF00347 Ribosomal protein L6 LNQ41_001050 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LNQ41_001055 PF00333 Ribosomal protein S5, N-terminal domain LNQ41_001055 PF03719 Ribosomal protein S5, C-terminal domain LNQ41_001060 PF00327 Ribosomal protein L30p/L7e LNQ41_001065 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LNQ41_001070 PF00344 SecY translocase LNQ41_001075 PF00444 Ribosomal protein L36 LNQ41_001080 PF00416 Ribosomal protein S13/S18 LNQ41_001085 PF00411 Ribosomal protein S11 LNQ41_001090 PF00163 Ribosomal protein S4/S9 N-terminal domain LNQ41_001090 PF01479 S4 domain LNQ41_001095 PF01000 RNA polymerase Rpb3/RpoA insert domain LNQ41_001095 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LNQ41_001095 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LNQ41_001100 PF01196 Ribosomal protein L17 LNQ41_001105 PF13411 MerR HTH family regulatory protein LNQ41_001110 PF03889 Alternative ribosome-rescue factor A LNQ41_001115 PF01741 Large-conductance mechanosensitive channel, MscL LNQ41_001120 PF02080 TrkA-C domain LNQ41_001120 PF02254 TrkA-N domain LNQ41_001125 PF01189 16S rRNA methyltransferase RsmB/F LNQ41_001125 PF01029 NusB family LNQ41_001130 PF02911 Formyl transferase, C-terminal domain LNQ41_001130 PF00551 Formyl transferase LNQ41_001135 PF01327 Polypeptide deformylase LNQ41_001140 PF02481 DNA recombination-mediator protein A LNQ41_001140 PF17782 DprA winged helix domain LNQ41_001145 PF04361 Protein of unknown function (DUF494) LNQ41_001150 PF01396 Topoisomerase DNA binding C4 zinc finger LNQ41_001155 PF01300 Telomere recombination LNQ41_001160 PF08501 Shikimate dehydrogenase substrate binding domain LNQ41_001160 PF01488 Shikimate / quinate 5-dehydrogenase LNQ41_001160 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LNQ41_001165 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ41_001195 PF00474 Sodium:solute symporter family LNQ41_001200 PF04341 Protein of unknown function, DUF485 LNQ41_001205 PF13193 AMP-binding enzyme C-terminal domain LNQ41_001205 PF00501 AMP-binding enzyme LNQ41_001205 PF16177 Acetyl-coenzyme A synthetase N-terminus LNQ41_001210 PF00375 Sodium:dicarboxylate symporter family LNQ41_001215 PF04143 Sulphur transport LNQ41_001220 PF01206 Sulfurtransferase TusA LNQ41_001225 PF02719 Polysaccharide biosynthesis protein LNQ41_001230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ41_001235 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ41_001240 PF03102 NeuB family LNQ41_001240 PF08666 SAF domain LNQ41_001250 PF00483 Nucleotidyl transferase LNQ41_001260 PF02348 Cytidylyltransferase LNQ41_001260 PF13472 GDSL-like Lipase/Acylhydrolase family LNQ41_001285 PF00795 Carbon-nitrogen hydrolase LNQ41_001285 PF02540 NAD synthase LNQ41_001290 PF00117 Glutamine amidotransferase class-I LNQ41_001295 PF00977 Histidine biosynthesis protein LNQ41_001300 PF02719 Polysaccharide biosynthesis protein LNQ41_001300 PF08485 Polysaccharide biosynthesis protein C-terminal LNQ41_001305 PF01370 NAD dependent epimerase/dehydratase family LNQ41_001310 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ41_001325 PF13614 AAA domain LNQ41_001335 PF00772 DnaB-like helicase N terminal domain LNQ41_001335 PF03796 DnaB-like helicase C terminal domain LNQ41_001370 PF01131 DNA topoisomerase LNQ41_001370 PF01751 Toprim domain LNQ41_001485 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_001550 PF03230 Antirestriction protein LNQ41_001575 PF06755 CbtA_toxin of type IV toxin-antitoxin system LNQ41_001580 PF02384 N-6 DNA Methylase LNQ41_001580 PF12161 HsdM N-terminal domain LNQ41_001585 PF02384 N-6 DNA Methylase LNQ41_001590 PF01420 Type I restriction modification DNA specificity domain LNQ41_001600 PF18766 SWI2/SNF2 ATPase LNQ41_001600 PF11867 Domain of unknown function (DUF3387) LNQ41_001600 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LNQ41_001610 PF00589 Phage integrase family LNQ41_001625 PF02683 Cytochrome C biogenesis protein transmembrane region LNQ41_001625 PF11412 Disulphide bond corrector protein DsbC LNQ41_001630 PF03091 CutA1 divalent ion tolerance protein LNQ41_001635 PF03605 Anaerobic c4-dicarboxylate membrane transporter LNQ41_001640 PF10415 Fumarase C C-terminus LNQ41_001640 PF00206 Lyase LNQ41_001645 PF04186 FxsA cytoplasmic membrane protein LNQ41_001650 PF00166 Chaperonin 10 Kd subunit LNQ41_001655 PF00118 TCP-1/cpn60 chaperonin family LNQ41_001660 PF13698 Domain of unknown function (DUF4156) LNQ41_001665 PF04055 Radical SAM superfamily LNQ41_001670 PF01132 Elongation factor P (EF-P) OB domain LNQ41_001670 PF09285 Elongation factor P, C-terminal LNQ41_001670 PF08207 Elongation factor P (EF-P) KOW-like domain LNQ41_001675 PF18416 N-acetylglucosamine binding protein domain 2 LNQ41_001675 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ41_001680 PF00196 Bacterial regulatory proteins, luxR family LNQ41_001690 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ41_001690 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ41_001695 PF13954 PapC N-terminal domain LNQ41_001695 PF13953 PapC C-terminal domain LNQ41_001695 PF00577 Outer membrane usher protein LNQ41_001705 PF00419 Fimbrial protein LNQ41_001710 PF00893 Small Multidrug Resistance protein LNQ41_001715 PF08212 Lipocalin-like domain LNQ41_001720 PF02313 Fumarate reductase subunit D LNQ41_001725 PF02300 Fumarate reductase subunit C LNQ41_001730 PF13183 4Fe-4S dicluster domain LNQ41_001730 PF13085 2Fe-2S iron-sulfur cluster binding domain LNQ41_001735 PF02910 Fumarate reductase flavoprotein C-term LNQ41_001735 PF00890 FAD binding domain LNQ41_001740 PF00152 tRNA synthetases class II (D, K and N) LNQ41_001745 PF12794 Mechanosensitive ion channel inner membrane domain 1 LNQ41_001745 PF12795 Mechanosensitive ion channel porin domain LNQ41_001745 PF00924 Mechanosensitive ion channel LNQ41_001750 PF02666 Phosphatidylserine decarboxylase LNQ41_001755 PF03193 RsgA GTPase LNQ41_001760 PF00929 Exonuclease LNQ41_001780 PF08331 Domain of unknown function (DUF1730) LNQ41_001785 PF03853 YjeF-related protein N-terminus LNQ41_001785 PF01256 Carbohydrate kinase LNQ41_001790 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LNQ41_001795 PF01520 N-acetylmuramoyl-L-alanine amidase LNQ41_001800 PF01119 DNA mismatch repair protein, C-terminal domain LNQ41_001800 PF08676 MutL C terminal dimerisation domain LNQ41_001810 PF17209 Hfq protein LNQ41_001815 PF16360 GTP-binding GTPase Middle Region LNQ41_001815 PF13167 GTP-binding GTPase N-terminal LNQ41_001815 PF01926 50S ribosome-binding GTPase LNQ41_001820 PF01145 SPFH domain / Band 7 family LNQ41_001820 PF12221 Bacterial membrane protein N terminal LNQ41_001825 PF01145 SPFH domain / Band 7 family LNQ41_001830 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LNQ41_001835 PF00709 Adenylosuccinate synthetase LNQ41_001840 PF02082 Transcriptional regulator LNQ41_001845 PF17876 Cold shock domain LNQ41_001845 PF08461 Ribonuclease R winged-helix domain LNQ41_001845 PF00575 S1 RNA binding domain LNQ41_001845 PF00773 RNB domain LNQ41_001845 PF08206 Ribonuclease B OB domain LNQ41_001850 PF00588 SpoU rRNA Methylase family LNQ41_001850 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNQ41_001870 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ41_001875 PF13953 PapC C-terminal domain LNQ41_001875 PF13954 PapC N-terminal domain LNQ41_001875 PF00577 Outer membrane usher protein LNQ41_001895 PF00326 Prolyl oligopeptidase family LNQ41_001905 PF01250 Ribosomal protein S6 LNQ41_001910 PF00436 Single-strand binding protein family LNQ41_001915 PF01084 Ribosomal protein S18 LNQ41_001920 PF03948 Ribosomal protein L9, C-terminal domain LNQ41_001920 PF01281 Ribosomal protein L9, N-terminal domain LNQ41_001925 PF08525 Opacity-associated protein A N-terminal motif LNQ41_001925 PF04225 Opacity-associated protein A LysM-like domain LNQ41_001930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ41_001930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LNQ41_001935 PF01814 Hemerythrin HHE cation binding domain LNQ41_001935 PF04405 Domain of Unknown function (DUF542) LNQ41_001940 PF02872 5'-nucleotidase, C-terminal domain LNQ41_001940 PF00149 Calcineurin-like phosphoesterase LNQ41_001945 PF00459 Inositol monophosphatase family LNQ41_001950 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LNQ41_001955 PF06526 Protein of unknown function (DUF1107) LNQ41_001960 PF00571 CBS domain LNQ41_001960 PF03471 Transporter associated domain LNQ41_001960 PF01595 Cyclin M transmembrane N-terminal domain LNQ41_001965 PF01625 Peptide methionine sulfoxide reductase LNQ41_001970 PF01103 Surface antigen LNQ41_001970 PF07244 Surface antigen variable number repeat LNQ41_001970 PF17243 POTRA domain TamA domain 1 LNQ41_001975 PF04357 TamB, inner membrane protein subunit of TAM complex LNQ41_001980 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LNQ41_001985 PF00719 Inorganic pyrophosphatase LNQ41_001990 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LNQ41_001995 PF02875 Mur ligase family, glutamate ligase domain LNQ41_001995 PF08245 Mur ligase middle domain LNQ41_001995 PF01225 Mur ligase family, catalytic domain LNQ41_002000 PF02863 Arginine repressor, C-terminal domain LNQ41_002000 PF01316 Arginine repressor, DNA binding domain LNQ41_002005 PF00056 lactate/malate dehydrogenase, NAD binding domain LNQ41_002005 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LNQ41_002010 PF13693 Winged helix-turn-helix DNA-binding LNQ41_002025 PF00348 Polyprenyl synthetase LNQ41_002030 PF00829 Ribosomal prokaryotic L21 protein LNQ41_002035 PF01016 Ribosomal L27 protein LNQ41_002040 PF00892 EamA-like transporter family LNQ41_002045 PF01018 GTP1/OBG LNQ41_002045 PF01926 50S ribosome-binding GTPase LNQ41_002050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_002050 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_002050 PF00672 HAMP domain LNQ41_002055 PF00072 Response regulator receiver domain LNQ41_002055 PF00486 Transcriptional regulatory protein, C terminal LNQ41_002060 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LNQ41_002065 PF03449 Transcription elongation factor, N-terminal LNQ41_002065 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ41_002070 PF01985 CRS1 / YhbY (CRM) domain LNQ41_002075 PF01728 FtsJ-like methyltransferase LNQ41_002080 PF06480 FtsH Extracellular LNQ41_002080 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_002080 PF17862 AAA+ lid domain LNQ41_002080 PF01434 Peptidase family M41 LNQ41_002085 PF00809 Pterin binding enzyme LNQ41_002090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNQ41_002090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNQ41_002090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNQ41_002090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNQ41_002095 PF03840 Preprotein translocase SecG subunit LNQ41_002110 PF17384 RimP C-terminal SH3 domain LNQ41_002110 PF02576 RimP N-terminal domain LNQ41_002115 PF13184 NusA-like KH domain LNQ41_002115 PF00575 S1 RNA binding domain LNQ41_002115 PF08529 NusA N-terminal domain LNQ41_002120 PF04760 Translation initiation factor IF-2, N-terminal region LNQ41_002120 PF08364 Bacterial translation initiation factor IF-2 associated region LNQ41_002120 PF11987 Translation-initiation factor 2 LNQ41_002120 PF03144 Elongation factor Tu domain 2 LNQ41_002120 PF00009 Elongation factor Tu GTP binding domain LNQ41_002125 PF02033 Ribosome-binding factor A LNQ41_002130 PF01509 TruB family pseudouridylate synthase (N terminal domain) LNQ41_002130 PF09157 Pseudouridine synthase II TruB, C-terminal LNQ41_002130 PF16198 tRNA pseudouridylate synthase B C-terminal domain LNQ41_002135 PF00312 Ribosomal protein S15 LNQ41_002140 PF00013 KH domain LNQ41_002140 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LNQ41_002140 PF03725 3' exoribonuclease family, domain 2 LNQ41_002140 PF00575 S1 RNA binding domain LNQ41_002140 PF01138 3' exoribonuclease family, domain 1 LNQ41_002145 PF07719 Tetratricopeptide repeat LNQ41_002145 PF13181 Tetratricopeptide repeat LNQ41_002150 PF03880 DbpA RNA binding domain LNQ41_002150 PF00270 DEAD/DEAH box helicase LNQ41_002150 PF12343 Cold shock protein DEAD box A LNQ41_002150 PF00271 Helicase conserved C-terminal domain LNQ41_002155 PF00296 Luciferase-like monooxygenase LNQ41_002165 PF03313 Serine dehydratase alpha chain LNQ41_002170 PF01136 Peptidase family U32 LNQ41_002175 PF01136 Peptidase family U32 LNQ41_002180 PF02036 SCP-2 sterol transfer family LNQ41_002185 PF13508 Acetyltransferase (GNAT) domain LNQ41_002190 PF01541 GIY-YIG catalytic domain LNQ41_002195 PF13520 Amino acid permease LNQ41_002200 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ41_002200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ41_002200 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ41_002205 PF10940 Protein of unknown function (DUF2618) LNQ41_002215 PF13460 NAD(P)H-binding LNQ41_002220 PF12706 Beta-lactamase superfamily domain LNQ41_002230 PF07969 Amidohydrolase family LNQ41_002235 PF00005 ABC transporter LNQ41_002240 PF00005 ABC transporter LNQ41_002245 PF06007 Phosphonate metabolism protein PhnJ LNQ41_002250 PF05861 Bacterial phosphonate metabolism protein (PhnI) LNQ41_002255 PF05845 Bacterial phosphonate metabolism protein (PhnH) LNQ41_002260 PF06754 Phosphonate metabolism protein PhnG LNQ41_002270 PF03477 ATP cone domain LNQ41_002270 PF13597 Anaerobic ribonucleoside-triphosphate reductase LNQ41_002275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNQ41_002275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNQ41_002280 PF06877 Regulator of ribonuclease activity B LNQ41_002285 PF00583 Acetyltransferase (GNAT) family LNQ41_002290 PF08264 Anticodon-binding domain of tRNA LNQ41_002290 PF00133 tRNA synthetases class I (I, L, M and V) LNQ41_002290 PF10458 Valyl tRNA synthetase tRNA binding arm LNQ41_002295 PF04364 DNA polymerase III chi subunit, HolC LNQ41_002300 PF02789 Cytosol aminopeptidase family, N-terminal domain LNQ41_002300 PF00883 Cytosol aminopeptidase family, catalytic domain LNQ41_002305 PF03739 Lipopolysaccharide export system permease LptF/LptG LNQ41_002310 PF03739 Lipopolysaccharide export system permease LptF/LptG LNQ41_002320 PF13356 Arm DNA-binding domain LNQ41_002320 PF00589 Phage integrase family LNQ41_002325 PF08463 EcoEI R protein C-terminal LNQ41_002325 PF00271 Helicase conserved C-terminal domain LNQ41_002325 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LNQ41_002325 PF04851 Type III restriction enzyme, res subunit LNQ41_002330 PF02384 N-6 DNA Methylase LNQ41_002335 PF01420 Type I restriction modification DNA specificity domain LNQ41_002355 PF04221 RelB antitoxin LNQ41_002360 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LNQ41_002435 PF01344 Kelch motif LNQ41_002440 PF06178 Oligogalacturonate-specific porin protein (KdgM) LNQ41_002445 PF02278 Polysaccharide lyase family 8, super-sandwich domain LNQ41_002445 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LNQ41_002445 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain LNQ41_002460 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LNQ41_002460 PF02278 Polysaccharide lyase family 8, super-sandwich domain LNQ41_002460 PF09092 Lyase, N terminal LNQ41_002460 PF09093 Lyase, catalytic LNQ41_002465 PF00884 Sulfatase LNQ41_002470 PF00455 DeoR C terminal sensor domain LNQ41_002470 PF08220 DeoR-like helix-turn-helix domain LNQ41_002475 PF08013 Tagatose 6 phosphate kinase LNQ41_002480 PF01380 SIS domain LNQ41_002485 PF03830 PTS system sorbose subfamily IIB component LNQ41_002490 PF03609 PTS system sorbose-specific iic component LNQ41_002495 PF03613 PTS system mannose/fructose/sorbose family IID component LNQ41_002505 PF01979 Amidohydrolase family LNQ41_002510 PF04962 KduI/IolB family LNQ41_002520 PF07470 Glycosyl Hydrolase Family 88 LNQ41_002525 PF04055 Radical SAM superfamily LNQ41_002525 PF13186 Iron-sulfur cluster-binding domain LNQ41_002530 PF00884 Sulfatase LNQ41_002540 PF01116 Fructose-bisphosphate aldolase class-II LNQ41_002550 PF10696 Protein of unknown function (DUF2501) LNQ41_002555 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ41_002570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ41_002575 PF00873 AcrB/AcrD/AcrF family LNQ41_002580 PF00465 Iron-containing alcohol dehydrogenase LNQ41_002585 PF02733 Dak1 domain LNQ41_002590 PF02734 DAK2 domain LNQ41_002595 PF05524 PEP-utilising enzyme, N-terminal LNQ41_002595 PF03610 PTS system fructose IIA component LNQ41_002595 PF00381 PTS HPr component phosphorylation site LNQ41_002595 PF00391 PEP-utilising enzyme, mobile domain LNQ41_002600 PF02954 Bacterial regulatory protein, Fis family LNQ41_002600 PF00989 PAS fold LNQ41_002600 PF00158 Sigma-54 interaction domain LNQ41_002605 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_002610 PF07256 Protein of unknown function (DUF1435) LNQ41_002630 PF08468 Methyltransferase small domain N-terminal LNQ41_002630 PF05175 Methyltransferase small domain LNQ41_002635 PF03603 DNA polymerase III psi subunit LNQ41_002640 PF00583 Acetyltransferase (GNAT) family LNQ41_002645 PF03144 Elongation factor Tu domain 2 LNQ41_002645 PF00009 Elongation factor Tu GTP binding domain LNQ41_002645 PF16658 Class II release factor RF3, C-terminal domain LNQ41_002650 PF04972 BON domain LNQ41_002655 PF07043 Protein of unknown function (DUF1328) LNQ41_002660 PF01734 Patatin-like phospholipase LNQ41_002665 PF01026 TatD related DNase LNQ41_002670 PF07670 Nucleoside recognition LNQ41_002670 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ41_002670 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ41_002675 PF01791 DeoC/LacD family aldolase LNQ41_002680 PF02885 Glycosyl transferase family, helical bundle domain LNQ41_002680 PF00591 Glycosyl transferase family, a/b domain LNQ41_002680 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LNQ41_002685 PF01676 Metalloenzyme superfamily LNQ41_002690 PF01048 Phosphorylase superfamily LNQ41_002695 PF10144 Bacterial virulence factor haemolysin LNQ41_002700 PF18429 Domain of unknown function (DUF5609) LNQ41_002705 PF18073 Rubredoxin metal binding domain LNQ41_002710 PF13521 AAA domain LNQ41_002710 PF01381 Helix-turn-helix LNQ41_002715 PF00005 ABC transporter LNQ41_002715 PF12848 ABC transporter LNQ41_002730 PF00689 Cation transporting ATPase, C-terminus LNQ41_002730 PF00690 Cation transporter/ATPase, N-terminus LNQ41_002735 PF14718 Soluble lytic murein transglycosylase L domain LNQ41_002735 PF01464 Transglycosylase SLT domain LNQ41_002740 PF01371 Trp repressor protein LNQ41_002745 PF01931 Protein of unknown function DUF84 LNQ41_002750 PF00300 Histidine phosphatase superfamily (branch 1) LNQ41_002755 PF12833 Helix-turn-helix domain LNQ41_002755 PF06445 GyrI-like small molecule binding domain LNQ41_002760 PF05981 CreA protein LNQ41_002765 PF00072 Response regulator receiver domain LNQ41_002765 PF00486 Transcriptional regulatory protein, C terminal LNQ41_002775 PF08254 Threonine leader peptide LNQ41_002780 PF00696 Amino acid kinase family LNQ41_002780 PF01842 ACT domain LNQ41_002780 PF13840 ACT domain LNQ41_002780 PF00742 Homoserine dehydrogenase LNQ41_002780 PF03447 Homoserine dehydrogenase, NAD binding domain LNQ41_002785 PF08544 GHMP kinases C terminal LNQ41_002785 PF00288 GHMP kinases N terminal domain LNQ41_002790 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_002790 PF14821 Threonine synthase N terminus LNQ41_002795 PF03883 Peroxide stress protein YaaA LNQ41_002800 PF00923 Transaldolase/Fructose-6-phosphate aldolase LNQ41_002805 PF00994 Probable molybdopterin binding domain LNQ41_002810 PF07690 Major Facilitator Superfamily LNQ41_002820 PF01184 GPR1/FUN34/yaaH family LNQ41_002825 PF00012 Hsp70 protein LNQ41_002830 PF00226 DnaJ domain LNQ41_002830 PF01556 DnaJ C terminal domain LNQ41_002830 PF00684 DnaJ central domain LNQ41_002835 PF06965 Na+/H+ antiporter 1 LNQ41_002840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_002840 PF03466 LysR substrate binding domain LNQ41_002845 PF01649 Ribosomal protein S20 LNQ41_002850 PF01687 Riboflavin kinase LNQ41_002850 PF06574 FAD synthetase LNQ41_002855 PF06827 Zinc finger found in FPG and IleRS LNQ41_002855 PF00133 tRNA synthetases class I (I, L, M and V) LNQ41_002855 PF08264 Anticodon-binding domain of tRNA LNQ41_002860 PF01252 Signal peptidase (SPase) II LNQ41_002865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ41_002870 PF02401 LytB protein LNQ41_002875 PF01113 Dihydrodipicolinate reductase, N-terminus LNQ41_002875 PF05173 Dihydrodipicolinate reductase, C-terminus LNQ41_002880 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LNQ41_002880 PF00117 Glutamine amidotransferase class-I LNQ41_002885 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNQ41_002885 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LNQ41_002885 PF02142 MGS-like domain LNQ41_002890 PF01810 LysE type translocator LNQ41_002895 PF06738 Putative threonine/serine exporter LNQ41_002900 PF12821 Threonine/Serine exporter, ThrE LNQ41_002905 PF00186 Dihydrofolate reductase LNQ41_002915 PF00149 Calcineurin-like phosphoesterase LNQ41_002920 PF04379 ApaG domain LNQ41_002925 PF00398 Ribosomal RNA adenine dimethylase LNQ41_002930 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LNQ41_002935 PF00639 PPIC-type PPIASE domain LNQ41_002935 PF09312 SurA N-terminal domain LNQ41_002940 PF04453 LPS transport system D LNQ41_002940 PF03968 OstA-like protein LNQ41_002945 PF00226 DnaJ domain LNQ41_002945 PF05099 Tellurite resistance protein TerB LNQ41_002950 PF00849 RNA pseudouridylate synthase LNQ41_002955 PF00271 Helicase conserved C-terminal domain LNQ41_002955 PF00176 SNF2 family N-terminal domain LNQ41_002955 PF18339 RapA N-terminal Tudor like domain 1 LNQ41_002955 PF18337 RapA N-terminal Tudor like domain LNQ41_002955 PF12137 RNA polymerase recycling family C-terminal LNQ41_002960 PF00136 DNA polymerase family B LNQ41_002960 PF03104 DNA polymerase family B, exonuclease domain LNQ41_002965 PF09335 SNARE associated Golgi protein LNQ41_002970 PF00005 ABC transporter LNQ41_002975 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_002985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ41_002985 PF12793 Sugar transport-related sRNA regulator N-term LNQ41_002995 PF07690 Major Facilitator Superfamily LNQ41_003000 PF00694 Aconitase C-terminal domain LNQ41_003005 PF00330 Aconitase family (aconitate hydratase) LNQ41_003010 PF00180 Isocitrate/isopropylmalate dehydrogenase LNQ41_003015 PF00682 HMGL-like LNQ41_003015 PF08502 LeuA allosteric (dimerisation) domain LNQ41_003020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_003020 PF03466 LysR substrate binding domain LNQ41_003025 PF00501 AMP-binding enzyme LNQ41_003030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ41_003030 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ41_003030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ41_003035 PF10369 Small subunit of acetolactate synthase LNQ41_003040 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ41_003040 PF00356 Bacterial regulatory proteins, lacI family LNQ41_003045 PF01797 Transposase IS200 like LNQ41_003050 PF12323 Helix-turn-helix domain LNQ41_003050 PF01385 Probable transposase LNQ41_003050 PF07282 Putative transposase DNA-binding domain LNQ41_003055 PF06610 L-alanine exporter LNQ41_003060 PF02381 MraZ protein, putative antitoxin-like LNQ41_003065 PF01795 MraW methylase family LNQ41_003070 PF04999 Cell division protein FtsL LNQ41_003075 PF03717 Penicillin-binding Protein dimerisation domain LNQ41_003075 PF00905 Penicillin binding protein transpeptidase domain LNQ41_003080 PF01225 Mur ligase family, catalytic domain LNQ41_003080 PF08245 Mur ligase middle domain LNQ41_003080 PF02875 Mur ligase family, glutamate ligase domain LNQ41_003085 PF02875 Mur ligase family, glutamate ligase domain LNQ41_003085 PF08245 Mur ligase middle domain LNQ41_003085 PF01225 Mur ligase family, catalytic domain LNQ41_003090 PF00953 Glycosyl transferase family 4 LNQ41_003090 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LNQ41_003095 PF02875 Mur ligase family, glutamate ligase domain LNQ41_003095 PF08245 Mur ligase middle domain LNQ41_003100 PF01098 Cell cycle protein LNQ41_003105 PF04101 Glycosyltransferase family 28 C-terminal domain LNQ41_003105 PF03033 Glycosyltransferase family 28 N-terminal domain LNQ41_003110 PF01225 Mur ligase family, catalytic domain LNQ41_003110 PF02875 Mur ligase family, glutamate ligase domain LNQ41_003110 PF08245 Mur ligase middle domain LNQ41_003115 PF07478 D-ala D-ala ligase C-terminus LNQ41_003115 PF01820 D-ala D-ala ligase N-terminus LNQ41_003120 PF03799 Cell division protein FtsQ LNQ41_003120 PF08478 POTRA domain, FtsQ-type LNQ41_003125 PF02491 SHS2 domain inserted in FTSA LNQ41_003130 PF00091 Tubulin/FtsZ family, GTPase domain LNQ41_003130 PF12327 FtsZ family, C-terminal domain LNQ41_003135 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LNQ41_003145 PF06558 Secretion monitor precursor protein (SecM) LNQ41_003150 PF02810 SEC-C motif LNQ41_003150 PF07517 SecA DEAD-like domain LNQ41_003150 PF01043 SecA preprotein cross-linking domain LNQ41_003150 PF07516 SecA Wing and Scaffold domain LNQ41_003155 PF00293 NUDIX domain LNQ41_003160 PF03884 DNA gyrase inhibitor YacG LNQ41_003165 PF07072 Cell division protein LNQ41_003170 PF01121 Dephospho-CoA kinase LNQ41_003175 PF00478 IMP dehydrogenase / GMP reductase domain LNQ41_003180 PF00482 Type II secretion system (T2SS), protein F LNQ41_003195 PF00437 Type II/IV secretion system protein LNQ41_003195 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LNQ41_003200 PF07963 Prokaryotic N-terminal methylation motif LNQ41_003205 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LNQ41_003205 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LNQ41_003210 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ41_003215 PF17113 Regulatory signalling modulator protein AmpE LNQ41_003220 PF00324 Amino acid permease LNQ41_003225 PF07729 FCD domain LNQ41_003225 PF00392 Bacterial regulatory proteins, gntR family LNQ41_003230 PF17831 Pyruvate dehydrogenase E1 component middle domain LNQ41_003230 PF00456 Transketolase, thiamine diphosphate binding domain LNQ41_003235 PF02817 e3 binding domain LNQ41_003235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNQ41_003235 PF00364 Biotin-requiring enzyme LNQ41_003240 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_003240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ41_003250 PF00330 Aconitase family (aconitate hydratase) LNQ41_003250 PF06434 Aconitate hydratase 2 N-terminus LNQ41_003250 PF11791 Aconitate B N-terminal domain LNQ41_003255 PF06062 Uncharacterised protein family (UPF0231) LNQ41_003260 PF00892 EamA-like transporter family LNQ41_003265 PF02675 S-adenosylmethionine decarboxylase LNQ41_003270 PF17284 Spermidine synthase tetramerisation domain LNQ41_003275 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LNQ41_003280 PF00394 Multicopper oxidase LNQ41_003280 PF07731 Multicopper oxidase LNQ41_003280 PF10518 TAT (twin-arginine translocation) pathway signal sequence LNQ41_003280 PF07732 Multicopper oxidase LNQ41_003285 PF00156 Phosphoribosyl transferase domain LNQ41_003290 PF00484 Carbonic anhydrase LNQ41_003295 PF00005 ABC transporter LNQ41_003300 PF01061 ABC-2 type transporter LNQ41_003305 PF01522 Polysaccharide deacetylase LNQ41_003310 PF02261 Aspartate decarboxylase LNQ41_003315 PF02569 Pantoate-beta-alanine ligase LNQ41_003320 PF02548 Ketopantoate hydroxymethyltransferase LNQ41_003325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LNQ41_003330 PF01743 Poly A polymerase head domain LNQ41_003330 PF12626 Polymerase A arginine-rich C-terminus LNQ41_003330 PF12627 Probable RNA and SrmB- binding site of polymerase A LNQ41_003335 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ41_003340 PF01258 Prokaryotic dksA/traR C4-type zinc finger LNQ41_003345 PF03749 Sugar fermentation stimulation protein RE domain LNQ41_003345 PF17746 SfsA N-terminal OB domain LNQ41_003350 PF02834 LigT like Phosphoesterase LNQ41_003355 PF04408 Helicase associated domain (HA2) LNQ41_003355 PF08482 ATP-dependent helicase C-terminal LNQ41_003355 PF00271 Helicase conserved C-terminal domain LNQ41_003355 PF00270 DEAD/DEAH box helicase LNQ41_003360 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LNQ41_003360 PF00912 Transglycosylase LNQ41_003360 PF00905 Penicillin binding protein transpeptidase domain LNQ41_003360 PF14814 Bifunctional transglycosylase second domain LNQ41_003365 PF00202 Aminotransferase class-III LNQ41_003370 PF00654 Voltage gated chloride channel LNQ41_003375 PF01521 Iron-sulphur cluster biosynthesis LNQ41_003380 PF03458 UPF0126 domain LNQ41_003385 PF01497 Periplasmic binding protein LNQ41_003390 PF01048 Phosphorylase superfamily LNQ41_003395 PF13286 Phosphohydrolase-associated domain LNQ41_003395 PF01966 HD domain LNQ41_003400 PF00595 PDZ domain LNQ41_003405 PF01627 Hpt domain LNQ41_003405 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_003405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_003405 PF00672 HAMP domain LNQ41_003405 PF00072 Response regulator receiver domain LNQ41_003405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNQ41_003410 PF01938 TRAM domain LNQ41_003410 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ41_003415 PF13291 ACT domain LNQ41_003415 PF04607 Region found in RelA / SpoT proteins LNQ41_003415 PF02824 TGS domain LNQ41_003420 PF03819 MazG nucleotide pyrophosphohydrolase domain LNQ41_003425 PF00117 Glutamine amidotransferase class-I LNQ41_003425 PF06418 CTP synthase N-terminus LNQ41_003430 PF00113 Enolase, C-terminal TIM barrel domain LNQ41_003430 PF03952 Enolase, N-terminal domain LNQ41_003435 PF04055 Radical SAM superfamily LNQ41_003440 PF01242 6-pyruvoyl tetrahydropterin synthase LNQ41_003445 PF00667 FAD binding domain LNQ41_003445 PF00258 Flavodoxin LNQ41_003445 PF00175 Oxidoreductase NAD-binding domain LNQ41_003450 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNQ41_003450 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNQ41_003455 PF01507 Phosphoadenosine phosphosulfate reductase family LNQ41_003470 PF04389 Peptidase family M28 LNQ41_003475 PF14824 Sirohaem biosynthesis protein central LNQ41_003475 PF10414 Sirohaem synthase dimerisation region LNQ41_003475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ41_003480 PF01507 Phosphoadenosine phosphosulfate reductase family LNQ41_003485 PF00009 Elongation factor Tu GTP binding domain LNQ41_003495 PF12084 Protein of unknown function (DUF3561) LNQ41_003500 PF04977 Septum formation initiator LNQ41_003505 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LNQ41_003510 PF02542 YgbB family LNQ41_003515 PF01142 tRNA pseudouridine synthase D (TruD) LNQ41_003520 PF01975 Survival protein SurE LNQ41_003530 PF01551 Peptidase family M23 LNQ41_003530 PF01476 LysM domain LNQ41_003535 PF04545 Sigma-70, region 4 LNQ41_003535 PF04539 Sigma-70 region 3 LNQ41_003535 PF04542 Sigma-70 region 2 LNQ41_003535 PF00140 Sigma-70 factor, region 1.2 LNQ41_003540 PF00488 MutS domain V LNQ41_003540 PF05192 MutS domain III LNQ41_003540 PF05188 MutS domain II LNQ41_003540 PF05190 MutS family domain IV LNQ41_003540 PF01624 MutS domain I LNQ41_003565 PF00501 AMP-binding enzyme LNQ41_003565 PF13193 AMP-binding enzyme C-terminal domain LNQ41_003565 PF00668 Condensation domain LNQ41_003565 PF00550 Phosphopantetheine attachment site LNQ41_003610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_003610 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_003610 PF00072 Response regulator receiver domain LNQ41_003610 PF09308 LuxQ, periplasmic LNQ41_003615 PF00196 Bacterial regulatory proteins, luxR family LNQ41_003615 PF00072 Response regulator receiver domain LNQ41_003630 PF01464 Transglycosylase SLT domain LNQ41_003650 PF01514 Secretory protein of YscJ/FliF family LNQ41_003670 PF12833 Helix-turn-helix domain LNQ41_003675 PF00263 Bacterial type II and III secretion system protein LNQ41_003675 PF03958 Bacterial type II/III secretion system short domain LNQ41_003680 PF07201 HrpJ-like domain LNQ41_003685 PF00771 FHIPEP family LNQ41_003695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ41_003695 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ41_003695 PF18269 T3SS EscN ATPase C-terminal domain LNQ41_003710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ41_003715 PF00813 FliP family LNQ41_003720 PF01313 Bacterial export proteins, family 3 LNQ41_003725 PF01311 Bacterial export proteins, family 1 LNQ41_003730 PF01312 FlhB HrpN YscU SpaS Family LNQ41_003735 PF07720 Tetratricopeptide repeat LNQ41_003760 PF00550 Phosphopantetheine attachment site LNQ41_003780 PF18416 N-acetylglucosamine binding protein domain 2 LNQ41_003780 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ41_003785 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LNQ41_003790 PF06750 Bacterial Peptidase A24 N-terminal domain LNQ41_003790 PF01478 Type IV leader peptidase family LNQ41_003800 PF05134 Type II secretion system (T2SS), protein L LNQ41_003800 PF12693 GspL periplasmic domain LNQ41_003805 PF03934 Type II secretion system (T2SS), protein K LNQ41_003810 PF11612 Type II secretion system (T2SS), protein J LNQ41_003810 PF07963 Prokaryotic N-terminal methylation motif LNQ41_003815 PF02501 Type II secretion system (T2SS), protein I LNQ41_003815 PF07963 Prokaryotic N-terminal methylation motif LNQ41_003825 PF08334 Type II secretion system (T2SS), protein G LNQ41_003825 PF07963 Prokaryotic N-terminal methylation motif LNQ41_003830 PF00482 Type II secretion system (T2SS), protein F LNQ41_003835 PF00437 Type II/IV secretion system protein LNQ41_003840 PF03958 Bacterial type II/III secretion system short domain LNQ41_003840 PF00263 Bacterial type II and III secretion system protein LNQ41_003845 PF11356 Type II secretion system protein C LNQ41_003870 PF05683 Fumarase C-terminus LNQ41_003870 PF05681 Fumarate hydratase (Fumerase) LNQ41_003875 PF07690 Major Facilitator Superfamily LNQ41_003880 PF02464 Competence-damaged protein LNQ41_003885 PF00154 recA bacterial DNA recombination protein LNQ41_003890 PF02631 RecX family LNQ41_003895 PF02272 DHHA1 domain LNQ41_003895 PF01411 tRNA synthetases class II (A) LNQ41_003895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ41_003900 PF02599 Global regulator protein family LNQ41_003925 PF01411 tRNA synthetases class II (A) LNQ41_003925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ41_003930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ41_003930 PF01411 tRNA synthetases class II (A) LNQ41_003935 PF13419 Haloacid dehalogenase-like hydrolase LNQ41_003940 PF09335 SNARE associated Golgi protein LNQ41_003945 PF04262 Glutamate-cysteine ligase LNQ41_003950 PF02664 S-Ribosylhomocysteinase (LuxS) LNQ41_003955 PF03471 Transporter associated domain LNQ41_003955 PF00571 CBS domain LNQ41_003955 PF01595 Cyclin M transmembrane N-terminal domain LNQ41_003960 PF01578 Cytochrome C assembly protein LNQ41_003965 PF02978 Signal peptide binding domain LNQ41_003965 PF02881 SRP54-type protein, helical bundle domain LNQ41_003965 PF00448 SRP54-type protein, GTPase domain LNQ41_003970 PF00886 Ribosomal protein S16 LNQ41_003975 PF05239 PRC-barrel domain LNQ41_003975 PF01782 RimM N-terminal domain LNQ41_003980 PF01746 tRNA (Guanine-1)-methyltransferase LNQ41_003985 PF01245 Ribosomal protein L19 LNQ41_003990 PF04338 Protein of unknown function, DUF481 LNQ41_003995 PF03605 Anaerobic c4-dicarboxylate membrane transporter LNQ41_004000 PF04397 LytTr DNA-binding domain LNQ41_004000 PF00072 Response regulator receiver domain LNQ41_004005 PF00793 DAHP synthetase I family LNQ41_004010 PF01817 Chorismate mutase type II LNQ41_004010 PF02153 Prephenate dehydrogenase LNQ41_004015 PF01817 Chorismate mutase type II LNQ41_004015 PF00800 Prephenate dehydratase LNQ41_004025 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LNQ41_004030 PF13525 Outer membrane lipoprotein LNQ41_004035 PF00849 RNA pseudouridylate synthase LNQ41_004035 PF01479 S4 domain LNQ41_004040 PF02578 Multi-copper polyphenol oxidoreductase laccase LNQ41_004045 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_004045 PF02861 Clp amino terminal domain, pathogenicity island component LNQ41_004045 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ41_004045 PF17871 AAA lid domain LNQ41_004045 PF07724 AAA domain (Cdc48 subfamily) LNQ41_004080 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ41_004085 PF01464 Transglycosylase SLT domain LNQ41_004085 PF01476 LysM domain LNQ41_004090 PF16123 Hydroxyacylglutathione hydrolase C-terminus LNQ41_004090 PF00753 Metallo-beta-lactamase superfamily LNQ41_004095 PF08241 Methyltransferase domain LNQ41_004100 PF00075 RNase H LNQ41_004105 PF00929 Exonuclease LNQ41_004115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNQ41_004115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNQ41_004115 PF09317 Domain of unknown function (DUF1974) LNQ41_004120 PF13580 SIS domain LNQ41_004125 PF13230 Glutamine amidotransferases class-II LNQ41_004130 PF03734 L,D-transpeptidase catalytic domain LNQ41_004135 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LNQ41_004135 PF11973 NQRA C-terminal domain LNQ41_004140 PF03116 NQR2, RnfD, RnfE family LNQ41_004145 PF04205 FMN-binding domain LNQ41_004150 PF02508 Rnf-Nqr subunit, membrane protein LNQ41_004155 PF02508 Rnf-Nqr subunit, membrane protein LNQ41_004160 PF00970 Oxidoreductase FAD-binding domain LNQ41_004160 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ41_004160 PF00175 Oxidoreductase NAD-binding domain LNQ41_004165 PF02424 ApbE family LNQ41_004170 PF04400 (Na+)-NQR maturation NqrM LNQ41_004175 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ41_004180 PF00817 impB/mucB/samB family LNQ41_004180 PF11799 impB/mucB/samB family C-terminal domain LNQ41_004180 PF11798 IMS family HHH motif LNQ41_004185 PF07687 Peptidase dimerisation domain LNQ41_004185 PF01546 Peptidase family M20/M25/M40 LNQ41_004190 PF00156 Phosphoribosyl transferase domain LNQ41_004195 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LNQ41_004200 PF07417 Sigma factor-binding transcriptional regulator Crl LNQ41_004205 PF00696 Amino acid kinase family LNQ41_004205 PF01472 PUA domain LNQ41_004210 PF00171 Aldehyde dehydrogenase family LNQ41_004215 PF07238 PilZ domain LNQ41_004215 PF07317 Flagellar regulator YcgR LNQ41_004240 PF07715 TonB-dependent Receptor Plug Domain LNQ41_004240 PF00593 TonB dependent receptor LNQ41_004245 PF01202 Shikimate kinase LNQ41_004270 PF07302 AroM protein LNQ41_004275 PF06865 Pyrimidine/purine nucleoside phosphorylase LNQ41_004280 PF04381 Putative exonuclease, RdgC LNQ41_004285 PF00480 ROK family LNQ41_004290 PF13476 AAA domain LNQ41_004295 PF12320 Type 5 capsule protein repressor C-terminal domain LNQ41_004295 PF00149 Calcineurin-like phosphoesterase LNQ41_004300 PF00072 Response regulator receiver domain LNQ41_004300 PF00486 Transcriptional regulatory protein, C terminal LNQ41_004305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_004305 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_004305 PF00989 PAS fold LNQ41_004305 PF11808 Phosphate regulon sensor protein PhoR LNQ41_004310 PF12849 PBP superfamily domain LNQ41_004315 PF05525 Branched-chain amino acid transport protein LNQ41_004320 PF00324 Amino acid permease LNQ41_004325 PF02903 Alpha amylase, N-terminal ig-like domain LNQ41_004325 PF00128 Alpha amylase, catalytic domain LNQ41_004335 PF10417 C-terminal domain of 1-Cys peroxiredoxin LNQ41_004335 PF00578 AhpC/TSA family LNQ41_004340 PF04336 Acyl carrier protein phosphodiesterase LNQ41_004345 PF02547 Queuosine biosynthesis protein LNQ41_004350 PF01702 Queuine tRNA-ribosyltransferase LNQ41_004355 PF02699 Preprotein translocase subunit LNQ41_004360 PF07549 SecD/SecF GG Motif LNQ41_004360 PF13721 SecD export protein N-terminal TM region LNQ41_004360 PF02355 Protein export membrane protein LNQ41_004365 PF07549 SecD/SecF GG Motif LNQ41_004365 PF02355 Protein export membrane protein LNQ41_004370 PF03477 ATP cone domain LNQ41_004375 PF01872 RibD C-terminal domain LNQ41_004375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ41_004380 PF00885 6,7-dimethyl-8-ribityllumazine synthase LNQ41_004385 PF01029 NusB family LNQ41_004390 PF00586 AIR synthase related protein, N-terminal domain LNQ41_004390 PF02769 AIR synthase related protein, C-terminal domain LNQ41_004395 PF04608 Phosphatidylglycerophosphatase A LNQ41_004400 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LNQ41_004400 PF02779 Transketolase, pyrimidine binding domain LNQ41_004400 PF02780 Transketolase, C-terminal domain LNQ41_004405 PF00348 Polyprenyl synthetase LNQ41_004410 PF02609 Exonuclease VII small subunit LNQ41_004415 PF02926 THUMP domain LNQ41_004415 PF02568 Thiamine biosynthesis protein (ThiI) LNQ41_004420 PF02954 Bacterial regulatory protein, Fis family LNQ41_004420 PF00072 Response regulator receiver domain LNQ41_004420 PF14532 Sigma-54 interaction domain LNQ41_004425 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_004425 PF00672 HAMP domain LNQ41_004425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_004435 PF07690 Major Facilitator Superfamily LNQ41_004440 PF01965 DJ-1/PfpI family LNQ41_004445 PF02558 Ketopantoate reductase PanE/ApbA LNQ41_004445 PF08546 Ketopantoate reductase PanE/ApbA C terminal LNQ41_004450 PF04461 Protein of unknown function (DUF520) LNQ41_004455 PF07690 Major Facilitator Superfamily LNQ41_004460 PF01040 UbiA prenyltransferase family LNQ41_004465 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LNQ41_004470 PF00510 Cytochrome c oxidase subunit III LNQ41_004475 PF00115 Cytochrome C and Quinol oxidase polypeptide I LNQ41_004480 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LNQ41_004480 PF06481 COX Aromatic Rich Motif LNQ41_004485 PF03502 Nucleoside-specific channel-forming protein, Tsx LNQ41_004490 PF07690 Major Facilitator Superfamily LNQ41_004495 PF03923 Uncharacterized lipoprotein LNQ41_004495 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LNQ41_004500 PF01722 BolA-like protein LNQ41_004505 PF05697 Bacterial trigger factor protein (TF) LNQ41_004505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNQ41_004505 PF05698 Bacterial trigger factor protein (TF) C-terminus LNQ41_004510 PF00574 Clp protease LNQ41_004515 PF07724 AAA domain (Cdc48 subfamily) LNQ41_004515 PF06689 ClpX C4-type zinc finger LNQ41_004515 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ41_004520 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_004520 PF05362 Lon protease (S16) C-terminal proteolytic domain LNQ41_004520 PF02190 ATP-dependent protease La (LON) substrate-binding domain LNQ41_004525 PF00216 Bacterial DNA-binding protein LNQ41_004530 PF13145 PPIC-type PPIASE domain LNQ41_004545 PF06508 Queuosine biosynthesis protein QueC LNQ41_004550 PF12793 Sugar transport-related sRNA regulator N-term LNQ41_004550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ41_004565 PF01037 Lrp/AsnC ligand binding domain LNQ41_004565 PF13404 AsnC-type helix-turn-helix domain LNQ41_004570 PF00664 ABC transporter transmembrane region LNQ41_004570 PF00005 ABC transporter LNQ41_004575 PF00664 ABC transporter transmembrane region LNQ41_004575 PF00005 ABC transporter LNQ41_004580 PF00543 Nitrogen regulatory protein P-II LNQ41_004585 PF00909 Ammonium Transporter Family LNQ41_004595 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LNQ41_004605 PF05321 Haemolysin expression modulating protein LNQ41_004610 PF10757 Biofilm formation regulator YbaJ LNQ41_004620 PF00444 Ribosomal protein L36 LNQ41_004625 PF01197 Ribosomal protein L31 LNQ41_004630 PF00873 AcrB/AcrD/AcrF family LNQ41_004635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ41_004635 PF00529 HlyD membrane-fusion protein of T1SS LNQ41_004640 PF00440 Bacterial regulatory proteins, tetR family LNQ41_004640 PF08361 MAATS-type transcriptional repressor, C-terminal region LNQ41_004645 PF02635 DsrE/DsrF-like family LNQ41_004650 PF00924 Mechanosensitive ion channel LNQ41_004650 PF12795 Mechanosensitive ion channel porin domain LNQ41_004650 PF12794 Mechanosensitive ion channel inner membrane domain 1 LNQ41_004655 PF10689 Protein of unknown function (DUF2496) LNQ41_004665 PF04304 Protein of unknown function (DUF454) LNQ41_004670 PF00156 Phosphoribosyl transferase domain LNQ41_004675 PF01970 Tripartite tricarboxylate transporter TctA family LNQ41_004690 PF00486 Transcriptional regulatory protein, C terminal LNQ41_004690 PF00072 Response regulator receiver domain LNQ41_004695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_004695 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_004700 PF12169 DNA polymerase III subunits gamma and tau domain III LNQ41_004700 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LNQ41_004700 PF12170 DNA polymerase III tau subunit V interacting with alpha LNQ41_004705 PF02575 YbaB/EbfC DNA-binding family LNQ41_004710 PF13662 Toprim domain LNQ41_004710 PF02132 RecR protein LNQ41_004715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_004715 PF00183 Hsp90 protein LNQ41_004720 PF05191 Adenylate kinase, active site lid LNQ41_004725 PF00762 Ferrochelatase LNQ41_004730 PF02706 Chain length determinant protein LNQ41_004735 PF00294 pfkB family carbohydrate kinase LNQ41_004740 PF02254 TrkA-N domain LNQ41_004740 PF00999 Sodium/hydrogen exchanger family LNQ41_004745 PF00149 Calcineurin-like phosphoesterase LNQ41_004745 PF02872 5'-nucleotidase, C-terminal domain LNQ41_004750 PF04073 Aminoacyl-tRNA editing domain LNQ41_004755 PF01963 TraB family LNQ41_004760 PF00403 Heavy-metal-associated domain LNQ41_004765 PF13411 MerR HTH family regulatory protein LNQ41_004770 PF01957 NfeD-like C-terminal, partner-binding LNQ41_004775 PF16200 C-terminal region of band_7 LNQ41_004775 PF01145 SPFH domain / Band 7 family LNQ41_004780 PF00085 Thioredoxin LNQ41_004785 PF00106 short chain dehydrogenase LNQ41_004790 PF13472 GDSL-like Lipase/Acylhydrolase family LNQ41_004795 PF00005 ABC transporter LNQ41_004805 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LNQ41_004805 PF02222 ATP-grasp domain LNQ41_004810 PF00731 AIR carboxylase LNQ41_004815 PF00149 Calcineurin-like phosphoesterase LNQ41_004820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LNQ41_004825 PF01406 tRNA synthetases class I (C) catalytic domain LNQ41_004825 PF09190 DALR domain LNQ41_004840 PF00419 Fimbrial protein LNQ41_004845 PF13954 PapC N-terminal domain LNQ41_004845 PF13953 PapC C-terminal domain LNQ41_004845 PF00577 Outer membrane usher protein LNQ41_004850 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ41_004850 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ41_004885 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LNQ41_004885 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LNQ41_004895 PF01022 Bacterial regulatory protein, arsR family LNQ41_004900 PF02040 Arsenical pump membrane protein LNQ41_004905 PF03960 ArsC family LNQ41_004915 PF00501 AMP-binding enzyme LNQ41_004940 PF01292 Prokaryotic cytochrome b561 LNQ41_004950 PF00343 Carbohydrate phosphorylase LNQ41_004960 PF00486 Transcriptional regulatory protein, C terminal LNQ41_004960 PF00072 Response regulator receiver domain LNQ41_004970 PF00483 Nucleotidyl transferase LNQ41_004980 PF07238 PilZ domain LNQ41_004980 PF00535 Glycosyl transferase family 2 LNQ41_004980 PF03552 Cellulose synthase LNQ41_005000 PF16355 Domain of unknown function (DUF4982) LNQ41_005000 PF00703 Glycosyl hydrolases family 2 LNQ41_005000 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LNQ41_005000 PF02837 Glycosyl hydrolases family 2, sugar binding domain LNQ41_005005 PF00072 Response regulator receiver domain LNQ41_005005 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNQ41_005005 PF01627 Hpt domain LNQ41_005005 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_005005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_005005 PF00672 HAMP domain LNQ41_005010 PF00072 Response regulator receiver domain LNQ41_005010 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_005015 PF00440 Bacterial regulatory proteins, tetR family LNQ41_005045 PF00196 Bacterial regulatory proteins, luxR family LNQ41_005050 PF00313 'Cold-shock' DNA-binding domain LNQ41_005055 PF00313 'Cold-shock' DNA-binding domain LNQ41_005060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LNQ41_005070 PF05230 MASE2 domain LNQ41_005070 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_005075 PF02416 mttA/Hcf106 family LNQ41_005080 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LNQ41_005080 PF04055 Radical SAM superfamily LNQ41_005085 PF03099 Biotin/lipoate A/B protein ligase family LNQ41_005090 PF04359 Protein of unknown function (DUF493) LNQ41_005095 PF07943 Penicillin-binding protein 5, C-terminal domain LNQ41_005095 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ41_005100 PF03330 Lytic transglycolase LNQ41_005100 PF05036 Sporulation related domain LNQ41_005105 PF01098 Cell cycle protein LNQ41_005110 PF03717 Penicillin-binding Protein dimerisation domain LNQ41_005110 PF00905 Penicillin binding protein transpeptidase domain LNQ41_005115 PF02590 Predicted SPOUT methyltransferase LNQ41_005125 PF01467 Cytidylyltransferase-like LNQ41_005130 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LNQ41_005130 PF06144 DNA polymerase III, delta subunit LNQ41_005135 PF04390 Lipopolysaccharide-assembly LNQ41_005140 PF08264 Anticodon-binding domain of tRNA LNQ41_005140 PF00133 tRNA synthetases class I (I, L, M and V) LNQ41_005140 PF13603 Leucyl-tRNA synthetase, Domain 2 LNQ41_005145 PF07295 Zinc-ribbon containing domain LNQ41_005150 PF00005 ABC transporter LNQ41_005155 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_005160 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_005165 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_005170 PF00795 Carbon-nitrogen hydrolase LNQ41_005175 PF03471 Transporter associated domain LNQ41_005175 PF00571 CBS domain LNQ41_005180 PF02130 Uncharacterized protein family UPF0054 LNQ41_005185 PF02562 PhoH-like protein LNQ41_005190 PF00919 Uncharacterized protein family UPF0004 LNQ41_005190 PF04055 Radical SAM superfamily LNQ41_005190 PF01938 TRAM domain LNQ41_005195 PF01494 FAD binding domain LNQ41_005230 PF00733 Asparagine synthase LNQ41_005230 PF13537 Glutamine amidotransferase domain LNQ41_005235 PF13344 Haloacid dehalogenase-like hydrolase LNQ41_005240 PF01047 MarR family LNQ41_005240 PF00480 ROK family LNQ41_005245 PF01979 Amidohydrolase family LNQ41_005250 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LNQ41_005255 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LNQ41_005255 PF00367 phosphotransferase system, EIIB LNQ41_005255 PF02378 Phosphotransferase system, EIIC LNQ41_005260 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ41_005260 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LNQ41_005265 PF03573 outer membrane porin, OprD family LNQ41_005270 PF13982 YbfN-like lipoprotein LNQ41_005275 PF02838 Glycosyl hydrolase family 20, domain 2 LNQ41_005275 PF03173 Putative carbohydrate binding domain LNQ41_005275 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LNQ41_005275 PF00728 Glycosyl hydrolase family 20, catalytic domain LNQ41_005280 PF01475 Ferric uptake regulator family LNQ41_005285 PF00258 Flavodoxin LNQ41_005290 PF02203 Tar ligand binding domain homologue LNQ41_005290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ41_005290 PF00672 HAMP domain LNQ41_005295 PF01402 Ribbon-helix-helix protein, copG family LNQ41_005300 PF12697 Alpha/beta hydrolase family LNQ41_005305 PF03925 SeqA protein C-terminal domain LNQ41_005305 PF17206 SeqA protein N-terminal domain LNQ41_005310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNQ41_005310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNQ41_005310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNQ41_005310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNQ41_005320 PF00072 Response regulator receiver domain LNQ41_005320 PF00486 Transcriptional regulatory protein, C terminal LNQ41_005325 PF02702 Osmosensitive K+ channel His kinase sensor domain LNQ41_005325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_005325 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_005325 PF13492 GAF domain LNQ41_005325 PF13493 Domain of unknown function (DUF4118) LNQ41_005330 PF02669 K+-transporting ATPase, c chain LNQ41_005340 PF03814 Potassium-transporting ATPase A subunit LNQ41_005345 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) LNQ41_005350 PF10725 Protein of unknown function (DUF2517) LNQ41_005355 PF08349 Protein of unknown function (DUF1722) LNQ41_005360 PF03441 FAD binding domain of DNA photolyase LNQ41_005360 PF00875 DNA photolyase LNQ41_005365 PF02112 cAMP phosphodiesterases class-II LNQ41_005370 PF01784 NIF3 (NGG1p interacting factor 3) LNQ41_005375 PF02682 Carboxyltransferase domain, subdomain C and D LNQ41_005380 PF02626 Carboxyltransferase domain, subdomain A and B LNQ41_005385 PF03746 LamB/YcsF family LNQ41_005400 PF01470 Pyroglutamyl peptidase LNQ41_005410 PF00285 Citrate synthase, C-terminal domain LNQ41_005415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LNQ41_005420 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LNQ41_005425 PF00890 FAD binding domain LNQ41_005425 PF02910 Fumarate reductase flavoprotein C-term LNQ41_005430 PF13085 2Fe-2S iron-sulfur cluster binding domain LNQ41_005435 PF02779 Transketolase, pyrimidine binding domain LNQ41_005435 PF16078 2-oxoglutarate dehydrogenase N-terminus LNQ41_005435 PF00676 Dehydrogenase E1 component LNQ41_005435 PF16870 2-oxoglutarate dehydrogenase C-terminal LNQ41_005440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNQ41_005440 PF00364 Biotin-requiring enzyme LNQ41_005440 PF02817 e3 binding domain LNQ41_005445 PF08442 ATP-grasp domain LNQ41_005445 PF00549 CoA-ligase LNQ41_005450 PF02629 CoA binding domain LNQ41_005450 PF00549 CoA-ligase LNQ41_005455 PF02872 5'-nucleotidase, C-terminal domain LNQ41_005455 PF00149 Calcineurin-like phosphoesterase LNQ41_005460 PF01654 Cytochrome bd terminal oxidase subunit I LNQ41_005465 PF02322 Cytochrome bd terminal oxidase subunit II LNQ41_005470 PF08173 Membrane bound YbgT-like protein LNQ41_005475 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LNQ41_005480 PF03061 Thioesterase superfamily LNQ41_005485 PF01618 MotA/TolQ/ExbB proton channel family LNQ41_005490 PF02472 Biopolymer transport protein ExbD/TolR LNQ41_005495 PF06519 TolA C-terminal LNQ41_005495 PF06519 TolA C-terminal LNQ41_005500 PF07676 WD40-like Beta Propeller Repeat LNQ41_005500 PF04052 TolB amino-terminal domain LNQ41_005505 PF00691 OmpA family LNQ41_005510 PF16331 TolA binding protein trimerisation LNQ41_005510 PF13174 Tetratricopeptide repeat LNQ41_005550 PF02445 Quinolinate synthetase A protein LNQ41_005555 PF04973 Nicotinamide mononucleotide transporter LNQ41_005560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_005560 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_005560 PF01627 Hpt domain LNQ41_005560 PF00989 PAS fold LNQ41_005560 PF00072 Response regulator receiver domain LNQ41_005560 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_005565 PF00196 Bacterial regulatory proteins, luxR family LNQ41_005565 PF00072 Response regulator receiver domain LNQ41_005570 PF00793 DAHP synthetase I family LNQ41_005575 PF00300 Histidine phosphatase superfamily (branch 1) LNQ41_005585 PF01263 Aldose 1-epimerase LNQ41_005590 PF10509 Galactokinase galactose-binding signature LNQ41_005590 PF08544 GHMP kinases C terminal LNQ41_005590 PF00288 GHMP kinases N terminal domain LNQ41_005595 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LNQ41_005595 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LNQ41_005600 PF16363 GDP-mannose 4,6 dehydratase LNQ41_005615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_005615 PF03459 TOBE domain LNQ41_005620 PF10766 Multidrug efflux pump-associated protein AcrZ LNQ41_005630 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_005635 PF00005 ABC transporter LNQ41_005635 PF03459 TOBE domain LNQ41_005645 PF10282 Lactonase, 7-bladed beta-propeller LNQ41_005650 PF00202 Aminotransferase class-III LNQ41_005655 PF06968 Biotin and Thiamin Synthesis associated domain LNQ41_005655 PF04055 Radical SAM superfamily LNQ41_005660 PF00155 Aminotransferase class I and II LNQ41_005665 PF08241 Methyltransferase domain LNQ41_005675 PF00005 ABC transporter LNQ41_005680 PF00271 Helicase conserved C-terminal domain LNQ41_005680 PF17757 UvrB interaction domain LNQ41_005680 PF12344 Ultra-violet resistance protein B LNQ41_005680 PF04851 Type III restriction enzyme, res subunit LNQ41_005680 PF02151 UvrB/uvrC motif LNQ41_005685 PF09905 DNA-binding protein VF530 LNQ41_005700 PF01032 FecCD transport family LNQ41_005705 PF00005 ABC transporter LNQ41_005710 PF01933 Uncharacterised protein family UPF0052 LNQ41_005715 PF06463 Molybdenum Cofactor Synthesis C LNQ41_005715 PF04055 Radical SAM superfamily LNQ41_005720 PF01967 MoaC family LNQ41_005725 PF02597 ThiS family LNQ41_005730 PF02391 MoaE protein LNQ41_005735 PF01027 Inhibitor of apoptosis-promoting Bax1 LNQ41_005750 PF00005 ABC transporter LNQ41_005755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ41_005760 PF09209 Tetracyclin repressor-like, C-terminal domain LNQ41_005760 PF00440 Bacterial regulatory proteins, tetR family LNQ41_005765 PF00271 Helicase conserved C-terminal domain LNQ41_005765 PF00270 DEAD/DEAH box helicase LNQ41_005770 PF01207 Dihydrouridine synthase (Dus) LNQ41_005780 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ41_005785 PF09330 D-lactate dehydrogenase, membrane binding LNQ41_005785 PF01565 FAD binding domain LNQ41_005790 PF01928 CYTH domain LNQ41_005795 PF01844 HNH endonuclease LNQ41_005805 PF04226 Transglycosylase associated protein LNQ41_005810 PF00005 ABC transporter LNQ41_005820 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_005825 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_005830 PF07308 Protein of unknown function (DUF1456) LNQ41_005835 PF00581 Rhodanese-like domain LNQ41_005840 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LNQ41_005845 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_005850 PF00005 ABC transporter LNQ41_005855 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_005860 PF13520 Amino acid permease LNQ41_005865 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ41_005865 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ41_005865 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ41_005875 PF00892 EamA-like transporter family LNQ41_005880 PF00267 Gram-negative porin LNQ41_005885 PF13307 Helicase C-terminal domain LNQ41_005885 PF06733 DEAD_2 LNQ41_005890 PF02885 Glycosyl transferase family, helical bundle domain LNQ41_005895 PF05971 RNA methyltransferase LNQ41_005900 PF00005 ABC transporter LNQ41_005905 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_005910 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_005915 PF00210 Ferritin-like domain LNQ41_005920 PF13649 Methyltransferase domain LNQ41_005925 PF00892 EamA-like transporter family LNQ41_005930 PF13505 Outer membrane protein beta-barrel domain LNQ41_005935 PF03448 MgtE intracellular N domain LNQ41_005935 PF01769 Divalent cation transporter LNQ41_005935 PF00571 CBS domain LNQ41_005940 PF16916 Dimerisation domain of Zinc Transporter LNQ41_005940 PF01545 Cation efflux family LNQ41_005945 PF12848 ABC transporter LNQ41_005945 PF00005 ABC transporter LNQ41_005950 PF00899 ThiF family LNQ41_005955 PF03453 MoeA N-terminal region (domain I and II) LNQ41_005955 PF03454 MoeA C-terminal region (domain IV) LNQ41_005955 PF00994 Probable molybdopterin binding domain LNQ41_005965 PF00756 Putative esterase LNQ41_005970 PF08240 Alcohol dehydrogenase GroES-like domain LNQ41_005970 PF00107 Zinc-binding dehydrogenase LNQ41_005975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_005975 PF03466 LysR substrate binding domain LNQ41_005980 PF06779 Uncharacterised MFS-type transporter YbfB LNQ41_005985 PF01227 GTP cyclohydrolase I LNQ41_005990 PF04235 Protein of unknown function (DUF418) LNQ41_005995 PF00356 Bacterial regulatory proteins, lacI family LNQ41_006000 PF13407 Periplasmic binding protein domain LNQ41_006005 PF00005 ABC transporter LNQ41_006010 PF02653 Branched-chain amino acid transport system / permease component LNQ41_006015 PF02698 DUF218 domain LNQ41_006020 PF03949 Malic enzyme, NAD binding domain LNQ41_006020 PF00390 Malic enzyme, N-terminal domain LNQ41_006030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_006030 PF03466 LysR substrate binding domain LNQ41_006035 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ41_006035 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LNQ41_006040 PF04172 LrgB-like family LNQ41_006045 PF03788 LrgA family LNQ41_006055 PF09334 tRNA synthetases class I (M) LNQ41_006055 PF01588 Putative tRNA binding domain LNQ41_006060 PF10609 NUBPL iron-transfer P-loop NTPase LNQ41_006065 PF00485 Phosphoribulokinase / Uridine kinase family LNQ41_006070 PF00692 dUTPase LNQ41_006075 PF05170 AsmA family LNQ41_006080 PF03606 C4-dicarboxylate anaerobic carrier LNQ41_006085 PF00571 CBS domain LNQ41_006085 PF03471 Transporter associated domain LNQ41_006085 PF03741 Integral membrane protein TerC family LNQ41_006090 PF00483 Nucleotidyl transferase LNQ41_006095 PF00483 Nucleotidyl transferase LNQ41_006100 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LNQ41_006100 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LNQ41_006110 PF01502 Phosphoribosyl-AMP cyclohydrolase LNQ41_006110 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LNQ41_006115 PF00977 Histidine biosynthesis protein LNQ41_006120 PF00977 Histidine biosynthesis protein LNQ41_006125 PF00117 Glutamine amidotransferase class-I LNQ41_006130 PF00475 Imidazoleglycerol-phosphate dehydratase LNQ41_006135 PF00155 Aminotransferase class I and II LNQ41_006140 PF00815 Histidinol dehydrogenase LNQ41_006145 PF01634 ATP phosphoribosyltransferase LNQ41_006145 PF08029 HisG, C-terminal domain LNQ41_006155 PF01370 NAD dependent epimerase/dehydratase family LNQ41_006160 PF13417 Glutathione S-transferase, N-terminal domain LNQ41_006160 PF00043 Glutathione S-transferase, C-terminal domain LNQ41_006175 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ41_006180 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_006180 PF00571 CBS domain LNQ41_006185 PF00768 D-alanyl-D-alanine carboxypeptidase LNQ41_006185 PF07943 Penicillin-binding protein 5, C-terminal domain LNQ41_006190 PF03313 Serine dehydratase alpha chain LNQ41_006190 PF03315 Serine dehydratase beta chain LNQ41_006200 PF00455 DeoR C terminal sensor domain LNQ41_006200 PF08220 DeoR-like helix-turn-helix domain LNQ41_006205 PF01791 DeoC/LacD family aldolase LNQ41_006210 PF01569 PAP2 superfamily LNQ41_006220 PF06826 Predicted Permease Membrane Region LNQ41_006220 PF02080 TrkA-C domain LNQ41_006225 PF00462 Glutaredoxin LNQ41_006230 PF07214 Protein of unknown function (DUF1418) LNQ41_006235 PF10722 Putative bacterial sensory transduction regulator LNQ41_006240 PF13416 Bacterial extracellular solute-binding protein LNQ41_006245 PF00005 ABC transporter LNQ41_006245 PF08402 TOBE domain LNQ41_006250 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_006255 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_006260 PF10767 Protein of unknown function (DUF2593) LNQ41_006265 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ41_006270 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_006275 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_006280 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_006285 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_006290 PF00005 ABC transporter LNQ41_006295 PF12883 Protein of unknown function (DUF3828) LNQ41_006300 PF01906 Putative heavy-metal-binding LNQ41_006305 PF01370 NAD dependent epimerase/dehydratase family LNQ41_006310 PF11066 Protein of unknown function (DUF2867) LNQ41_006310 PF13460 NAD(P)H-binding LNQ41_006315 PF01212 Beta-eliminating lyase LNQ41_006320 PF00175 Oxidoreductase NAD-binding domain LNQ41_006320 PF00970 Oxidoreductase FAD-binding domain LNQ41_006320 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ41_006325 PF03063 Prismane/CO dehydrogenase family LNQ41_006330 PF03956 Lysine exporter LysO LNQ41_006335 PF11398 Protein of unknown function (DUF2813) LNQ41_006340 PF04393 Protein of unknown function (DUF535) LNQ41_006345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ41_006350 PF02687 FtsX-like permease family LNQ41_006350 PF12704 MacB-like periplasmic core domain LNQ41_006350 PF00005 ABC transporter LNQ41_006355 PF00313 'Cold-shock' DNA-binding domain LNQ41_006360 PF02617 ATP-dependent Clp protease adaptor protein ClpS LNQ41_006365 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_006365 PF07724 AAA domain (Cdc48 subfamily) LNQ41_006365 PF17871 AAA lid domain LNQ41_006365 PF02861 Clp amino terminal domain, pathogenicity island component LNQ41_006365 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ41_006370 PF01176 Translation initiation factor 1A / IF-1 LNQ41_006375 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LNQ41_006380 PF00005 ABC transporter LNQ41_006380 PF00664 ABC transporter transmembrane region LNQ41_006385 PF00664 ABC transporter transmembrane region LNQ41_006385 PF00005 ABC transporter LNQ41_006390 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_006395 PF01037 Lrp/AsnC ligand binding domain LNQ41_006400 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LNQ41_006400 PF17854 FtsK alpha domain LNQ41_006400 PF01580 FtsK/SpoIIIE family LNQ41_006400 PF09397 Ftsk gamma domain LNQ41_006405 PF03548 Outer membrane lipoprotein carrier protein LolA LNQ41_006410 PF16193 AAA C-terminal domain LNQ41_006410 PF12002 MgsA AAA+ ATPase C terminal LNQ41_006410 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_006415 PF02403 Seryl-tRNA synthetase N-terminal domain LNQ41_006415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ41_006420 PF07690 Major Facilitator Superfamily LNQ41_006425 PF04055 Radical SAM superfamily LNQ41_006430 PF01228 Glycine radical LNQ41_006430 PF02901 Pyruvate formate lyase-like LNQ41_006435 PF01226 Formate/nitrite transporter LNQ41_006440 PF18381 YcaO cyclodehydratase C-terminal domain LNQ41_006440 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LNQ41_006445 PF00710 Asparaginase, N-terminal LNQ41_006445 PF17763 Glutaminase/Asparaginase C-terminal domain LNQ41_006450 PF00266 Aminotransferase class-V LNQ41_006455 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNQ41_006460 PF02224 Cytidylate kinase LNQ41_006465 PF00575 S1 RNA binding domain LNQ41_006470 PF00216 Bacterial DNA-binding protein LNQ41_006475 PF00753 Metallo-beta-lactamase superfamily LNQ41_006475 PF03772 Competence protein LNQ41_006480 PF00664 ABC transporter transmembrane region LNQ41_006480 PF00005 ABC transporter LNQ41_006485 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LNQ41_006490 PF07063 Domain of unknown function (DUF1338) LNQ41_006495 PF00313 'Cold-shock' DNA-binding domain LNQ41_006500 PF00313 'Cold-shock' DNA-binding domain LNQ41_006505 PF03966 Trm112p-like protein LNQ41_006510 PF02348 Cytidylyltransferase LNQ41_006515 PF01636 Phosphotransferase enzyme family LNQ41_006520 PF02698 DUF218 domain LNQ41_006525 PF13847 Methyltransferase domain LNQ41_006530 PF03882 MukF winged-helix domain LNQ41_006530 PF17193 MukF C-terminal domain LNQ41_006530 PF17192 MukF middle domain LNQ41_006535 PF04288 MukE-like family LNQ41_006540 PF04310 MukB N-terminal LNQ41_006540 PF16330 MukB hinge domain LNQ41_006545 PF01471 Putative peptidoglycan binding domain LNQ41_006545 PF03734 L,D-transpeptidase catalytic domain LNQ41_006550 PF05951 Bacterial protein of unknown function (DUF882) LNQ41_006555 PF00753 Metallo-beta-lactamase superfamily LNQ41_006560 PF00155 Aminotransferase class I and II LNQ41_006565 PF00267 Gram-negative porin LNQ41_006570 PF01336 OB-fold nucleic acid binding domain LNQ41_006570 PF00152 tRNA synthetases class II (D, K and N) LNQ41_006575 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LNQ41_006575 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LNQ41_006580 PF11940 Domain of unknown function (DUF3458) Ig-like fold LNQ41_006580 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LNQ41_006580 PF01433 Peptidase family M1 domain LNQ41_006585 PF01180 Dihydroorotate dehydrogenase LNQ41_006590 PF07126 Cell-division protein ZapC LNQ41_006595 PF03476 MOSC N-terminal beta barrel domain LNQ41_006595 PF03473 MOSC domain LNQ41_006595 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ41_006600 PF01170 Putative RNA methylase family UPF0020 LNQ41_006600 PF02926 THUMP domain LNQ41_006600 PF10672 S-adenosylmethionine-dependent methyltransferase LNQ41_006605 PF12848 ABC transporter LNQ41_006605 PF16326 ABC transporter C-terminal domain LNQ41_006605 PF00005 ABC transporter LNQ41_006610 PF04403 Paraquat-inducible protein A LNQ41_006615 PF02470 MlaD protein LNQ41_006620 PF03886 ABC-type transport auxiliary lipoprotein component LNQ41_006625 PF04957 Ribosome modulation factor LNQ41_006630 PF07977 FabA-like domain LNQ41_006635 PF13654 AAA domain LNQ41_006635 PF05362 Lon protease (S16) C-terminal proteolytic domain LNQ41_006640 PF17414 MatP C-terminal ribbon-helix-helix domain LNQ41_006640 PF06303 MatP N-terminal domain LNQ41_006645 PF01389 OmpA-like transmembrane domain LNQ41_006645 PF00691 OmpA family LNQ41_006650 PF03846 Cell division inhibitor SulA LNQ41_006655 PF04993 TfoX N-terminal domain LNQ41_006655 PF04994 TfoX C-terminal domain LNQ41_006660 PF12805 FUSC-like inner membrane protein yccS LNQ41_006665 PF03733 Inner membrane component domain LNQ41_006670 PF00580 UvrD/REP helicase N-terminal domain LNQ41_006670 PF13361 UvrD-like helicase C-terminal domain LNQ41_006670 PF12462 DNA helicase IV / RNA helicase N terminal LNQ41_006675 PF02142 MGS-like domain LNQ41_006680 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LNQ41_006685 PF13380 CoA binding domain LNQ41_006690 PF08755 Hemimethylated DNA-binding protein YccV like LNQ41_006695 PF17785 PUA-like domain LNQ41_006695 PF10672 S-adenosylmethionine-dependent methyltransferase LNQ41_006700 PF00708 Acylphosphatase LNQ41_006705 PF04358 DsrC like protein LNQ41_006715 PF00484 Carbonic anhydrase LNQ41_006720 PF00999 Sodium/hydrogen exchanger family LNQ41_006720 PF03471 Transporter associated domain LNQ41_006720 PF02080 TrkA-C domain LNQ41_006730 PF01757 Acyltransferase family LNQ41_006735 PF04349 Periplasmic glucan biosynthesis protein, MdoG LNQ41_006740 PF00535 Glycosyl transferase family 2 LNQ41_006750 PF00854 POT family LNQ41_006760 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ41_006765 PF00581 Rhodanese-like domain LNQ41_006765 PF12368 Rhodanase C-terminal LNQ41_006765 PF17773 UPF0176 acylphosphatase like domain LNQ41_006770 PF01594 AI-2E family transporter LNQ41_006775 PF00196 Bacterial regulatory proteins, luxR family LNQ41_006780 PF01266 FAD dependent oxidoreductase LNQ41_006785 PF13991 BssS protein family LNQ41_006790 PF06183 DinI-like family LNQ41_006795 PF01979 Amidohydrolase family LNQ41_006800 PF03992 Antibiotic biosynthesis monooxygenase LNQ41_006810 PF12111 Polyribonucleotide phosphorylase C terminal LNQ41_006810 PF10150 Ribonuclease E/G family LNQ41_006810 PF00575 S1 RNA binding domain LNQ41_006815 PF00849 RNA pseudouridylate synthase LNQ41_006815 PF01479 S4 domain LNQ41_006820 PF02545 Maf-like protein LNQ41_006825 PF02620 Large ribosomal RNA subunit accumulation protein YceD LNQ41_006830 PF01783 Ribosomal L32p protein family LNQ41_006835 PF02504 Fatty acid synthesis protein LNQ41_006840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LNQ41_006840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LNQ41_006845 PF00698 Acyl transferase domain LNQ41_006855 PF00550 Phosphopantetheine attachment site LNQ41_006860 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ41_006860 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ41_006865 PF01063 Amino-transferase class IV LNQ41_006870 PF02618 YceG-like family LNQ41_006875 PF02223 Thymidylate kinase LNQ41_006880 PF09115 DNA polymerase III, delta subunit, C terminal LNQ41_006885 PF01026 TatD related DNase LNQ41_006890 PF00367 phosphotransferase system, EIIB LNQ41_006890 PF02378 Phosphotransferase system, EIIC LNQ41_006895 PF01230 HIT domain LNQ41_006900 PF07233 Protein of unknown function (DUF1425) LNQ41_006905 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LNQ41_006905 PF13036 Peptidoglycan-synthase activator LpoB LNQ41_006910 PF01636 Phosphotransferase enzyme family LNQ41_006915 PF00933 Glycosyl hydrolase family 3 N terminal domain LNQ41_006920 PF05728 Uncharacterised protein family (UPF0227) LNQ41_006925 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_006930 PF05433 Glycine zipper 2TM domain LNQ41_006935 PF02559 CarD-like/TRCF domain LNQ41_006935 PF00271 Helicase conserved C-terminal domain LNQ41_006935 PF00270 DEAD/DEAH box helicase LNQ41_006935 PF03461 TRCF domain LNQ41_006935 PF17757 UvrB interaction domain LNQ41_006940 PF02687 FtsX-like permease family LNQ41_006940 PF12704 MacB-like periplasmic core domain LNQ41_006945 PF00005 ABC transporter LNQ41_006950 PF02687 FtsX-like permease family LNQ41_006950 PF12704 MacB-like periplasmic core domain LNQ41_006955 PF00480 ROK family LNQ41_006960 PF02146 Sir2 family LNQ41_006965 PF07687 Peptidase dimerisation domain LNQ41_006965 PF01546 Peptidase family M20/M25/M40 LNQ41_006970 PF08007 Cupin superfamily protein LNQ41_006975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_006975 PF08918 PhoQ Sensor LNQ41_006980 PF00072 Response regulator receiver domain LNQ41_006980 PF00486 Transcriptional regulatory protein, C terminal LNQ41_006990 PF08328 Adenylosuccinate lyase C-terminal LNQ41_006990 PF00206 Lyase LNQ41_006995 PF04356 Protein of unknown function (DUF489) LNQ41_007005 PF00293 NUDIX domain LNQ41_007010 PF00849 RNA pseudouridylate synthase LNQ41_007015 PF00180 Isocitrate/isopropylmalate dehydrogenase LNQ41_007020 PF03472 Autoinducer binding domain LNQ41_007020 PF00196 Bacterial regulatory proteins, luxR family LNQ41_007025 PF00765 Autoinducer synthase LNQ41_007030 PF00232 Glycosyl hydrolase family 1 LNQ41_007040 PF01432 Peptidase family M3 LNQ41_007045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ41_007045 PF02203 Tar ligand binding domain homologue LNQ41_007045 PF00672 HAMP domain LNQ41_007050 PF03390 2-hydroxycarboxylate transporter family LNQ41_007055 PF01797 Transposase IS200 like LNQ41_007060 PF01385 Probable transposase LNQ41_007060 PF12323 Helix-turn-helix domain LNQ41_007060 PF07282 Putative transposase DNA-binding domain LNQ41_007070 PF00072 Response regulator receiver domain LNQ41_007075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_007075 PF00989 PAS fold LNQ41_007075 PF17203 Single cache domain 3 LNQ41_007075 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LNQ41_007080 PF00939 Sodium:sulfate symporter transmembrane region LNQ41_007085 PF00413 Matrixin LNQ41_007085 PF08548 Peptidase M10 serralysin C terminal LNQ41_007085 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LNQ41_007090 PF02974 Protease inhibitor Inh LNQ41_007095 PF00664 ABC transporter transmembrane region LNQ41_007095 PF00005 ABC transporter LNQ41_007100 PF00529 HlyD membrane-fusion protein of T1SS LNQ41_007105 PF02321 Outer membrane efflux protein LNQ41_007120 PF02311 AraC-like ligand binding domain LNQ41_007120 PF12833 Helix-turn-helix domain LNQ41_007125 PF02562 PhoH-like protein LNQ41_007130 PF01699 Sodium/calcium exchanger protein LNQ41_007135 PF04954 Siderophore-interacting protein LNQ41_007135 PF08021 Siderophore-interacting FAD-binding domain LNQ41_007140 PF00672 HAMP domain LNQ41_007140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_007140 PF07730 Histidine kinase LNQ41_007140 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LNQ41_007150 PF02322 Cytochrome bd terminal oxidase subunit II LNQ41_007155 PF01654 Cytochrome bd terminal oxidase subunit I LNQ41_007160 PF00392 Bacterial regulatory proteins, gntR family LNQ41_007160 PF00155 Aminotransferase class I and II LNQ41_007165 PF00202 Aminotransferase class-III LNQ41_007170 PF04958 Arginine N-succinyltransferase beta subunit LNQ41_007175 PF00171 Aldehyde dehydrogenase family LNQ41_007180 PF04996 Succinylarginine dihydrolase LNQ41_007190 PF00267 Gram-negative porin LNQ41_007200 PF01979 Amidohydrolase family LNQ41_007205 PF00392 Bacterial regulatory proteins, gntR family LNQ41_007205 PF07702 UTRA domain LNQ41_007210 PF01979 Amidohydrolase family LNQ41_007215 PF05962 HutD LNQ41_007220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_007220 PF03466 LysR substrate binding domain LNQ41_007230 PF03824 High-affinity nickel-transport protein LNQ41_007235 PF00708 Acylphosphatase LNQ41_007235 PF17788 HypF Kae1-like domain LNQ41_007235 PF01300 Telomere recombination LNQ41_007235 PF07503 HypF finger LNQ41_007240 PF01568 Molydopterin dinucleotide binding domain LNQ41_007240 PF00384 Molybdopterin oxidoreductase LNQ41_007240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ41_007245 PF13247 4Fe-4S dicluster domain LNQ41_007245 PF12800 4Fe-4S binding domain LNQ41_007250 PF01750 Hydrogenase maturation protease LNQ41_007255 PF07450 Formate hydrogenlyase maturation protein HycH LNQ41_007260 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LNQ41_007265 PF12838 4Fe-4S dicluster domain LNQ41_007270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LNQ41_007270 PF00374 Nickel-dependent hydrogenase LNQ41_007270 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LNQ41_007275 PF00146 NADH dehydrogenase LNQ41_007280 PF00361 Proton-conducting membrane transporter LNQ41_007285 PF13247 4Fe-4S dicluster domain LNQ41_007290 PF11046 Transcriptional repressor of hyc and hyp operons LNQ41_007295 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LNQ41_007300 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNQ41_007305 PF01455 HupF/HypC family LNQ41_007310 PF01924 Hydrogenase formation hypA family LNQ41_007315 PF02769 AIR synthase related protein, C-terminal domain LNQ41_007315 PF00586 AIR synthase related protein, N-terminal domain LNQ41_007320 PF01590 GAF domain LNQ41_007320 PF00158 Sigma-54 interaction domain LNQ41_007320 PF02954 Bacterial regulatory protein, Fis family LNQ41_007340 PF00145 C-5 cytosine-specific DNA methylase LNQ41_007345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_007345 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_007345 PF13755 Sensor N-terminal transmembrane domain LNQ41_007345 PF13756 Stimulus-sensing domain LNQ41_007345 PF00672 HAMP domain LNQ41_007370 PF01695 IstB-like ATP binding protein LNQ41_007385 PF01926 50S ribosome-binding GTPase LNQ41_007385 PF06071 Protein of unknown function (DUF933) LNQ41_007395 PF01195 Peptidyl-tRNA hydrolase LNQ41_007400 PF10762 Protein of unknown function (DUF2583) LNQ41_007405 PF14572 Phosphoribosyl synthetase-associated domain LNQ41_007405 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LNQ41_007410 PF08544 GHMP kinases C terminal LNQ41_007410 PF00288 GHMP kinases N terminal domain LNQ41_007415 PF03550 Outer membrane lipoprotein LolB LNQ41_007420 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LNQ41_007420 PF01488 Shikimate / quinate 5-dehydrogenase LNQ41_007420 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LNQ41_007425 PF03462 PCRF domain LNQ41_007425 PF00472 RF-1 domain LNQ41_007430 PF13847 Methyltransferase domain LNQ41_007430 PF17827 PrmC N-terminal domain LNQ41_007435 PF04247 Invasion gene expression up-regulator, SirB LNQ41_007440 PF13369 Transglutaminase-like superfamily LNQ41_007445 PF00793 DAHP synthetase I family LNQ41_007450 PF01740 STAS domain LNQ41_007450 PF00916 Sulfate permease family LNQ41_007455 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_007465 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ41_007475 PF00854 POT family LNQ41_007480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ41_007485 PF02811 PHP domain LNQ41_007490 PF02613 Nitrate reductase delta subunit LNQ41_007495 PF07273 Protein of unknown function (DUF1439) LNQ41_007505 PF07690 Major Facilitator Superfamily LNQ41_007510 PF13302 Acetyltransferase (GNAT) domain LNQ41_007515 PF04337 Protein of unknown function, DUF480 LNQ41_007520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ41_007525 PF03023 Lipid II flippase MurJ LNQ41_007530 PF08479 POTRA domain, ShlB-type LNQ41_007530 PF17287 POTRA domain LNQ41_007530 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ41_007535 PF13332 Hemagglutinin repeat LNQ41_007535 PF05860 haemagglutination activity domain LNQ41_007545 PF03485 Arginyl tRNA synthetase N terminal domain LNQ41_007545 PF05746 DALR anticodon binding domain LNQ41_007545 PF00750 tRNA synthetases class I (R) LNQ41_007550 PF06185 YecM protein LNQ41_007555 PF03932 CutC family LNQ41_007560 PF08003 Protein of unknown function (DUF1698) LNQ41_007565 PF13649 Methyltransferase domain LNQ41_007570 PF01124 MAPEG family LNQ41_007575 PF01904 Protein of unknown function DUF72 LNQ41_007585 PF02938 GAD domain LNQ41_007585 PF00152 tRNA synthetases class II (D, K and N) LNQ41_007585 PF01336 OB-fold nucleic acid binding domain LNQ41_007590 PF00293 NUDIX domain LNQ41_007595 PF01709 Transcriptional regulator LNQ41_007600 PF02075 Crossover junction endodeoxyribonuclease RuvC LNQ41_007605 PF07499 RuvA, C-terminal domain LNQ41_007605 PF01330 RuvA N terminal domain LNQ41_007610 PF17864 RuvB AAA lid domain LNQ41_007610 PF05496 Holliday junction DNA helicase RuvB P-loop domain LNQ41_007610 PF05491 RuvB C-terminal winged helix domain LNQ41_007615 PF00854 POT family LNQ41_007620 PF00950 ABC 3 transport family LNQ41_007625 PF00005 ABC transporter LNQ41_007630 PF01297 Zinc-uptake complex component A periplasmic LNQ41_007635 PF01476 LysM domain LNQ41_007635 PF08525 Opacity-associated protein A N-terminal motif LNQ41_007635 PF01551 Peptidase family M23 LNQ41_007640 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ41_007645 PF00224 Pyruvate kinase, barrel domain LNQ41_007645 PF02887 Pyruvate kinase, alpha/beta domain LNQ41_007650 PF01418 Helix-turn-helix domain, rpiR family LNQ41_007650 PF01380 SIS domain LNQ41_007655 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LNQ41_007655 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LNQ41_007660 PF01081 KDPG and KHG aldolase LNQ41_007665 PF00893 Small Multidrug Resistance protein LNQ41_007670 PF00893 Small Multidrug Resistance protein LNQ41_007675 PF01042 Endoribonuclease L-PSP LNQ41_007680 PF04851 Type III restriction enzyme, res subunit LNQ41_007680 PF13307 Helicase C-terminal domain LNQ41_007685 PF00814 Glycoprotease family LNQ41_007690 PF03843 Outer membrane lipoprotein Slp family LNQ41_007695 PF13193 AMP-binding enzyme C-terminal domain LNQ41_007695 PF00501 AMP-binding enzyme LNQ41_007700 PF00570 HRDC domain LNQ41_007700 PF01612 3'-5' exonuclease LNQ41_007705 PF03776 Septum formation topological specificity factor MinE LNQ41_007710 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNQ41_007715 PF03775 Septum formation inhibitor MinC, C-terminal domain LNQ41_007715 PF05209 Septum formation inhibitor MinC, N-terminal domain LNQ41_007720 PF05166 YcgL domain LNQ41_007725 PF01557 Fumarylacetoacetate (FAA) hydrolase family LNQ41_007730 PF03692 Putative zinc- or iron-chelating domain LNQ41_007745 PF02600 Disulfide bond formation protein DsbB LNQ41_007750 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LNQ41_007755 PF00392 Bacterial regulatory proteins, gntR family LNQ41_007755 PF07840 FadR C-terminal domain LNQ41_007760 PF04293 SpoVR like protein LNQ41_007765 PF01266 FAD dependent oxidoreductase LNQ41_007770 PF01168 Alanine racemase, N-terminal domain LNQ41_007770 PF00842 Alanine racemase, C-terminal domain LNQ41_007775 PF07690 Major Facilitator Superfamily LNQ41_007785 PF13426 PAS domain LNQ41_007785 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_007785 PF00563 EAL domain LNQ41_007790 PF03466 LysR substrate binding domain LNQ41_007790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_007795 PF03306 Alpha-acetolactate decarboxylase LNQ41_007800 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ41_007800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ41_007800 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ41_007805 PF04285 Protein of unknown function (DUF444) LNQ41_007810 PF06798 PrkA serine protein kinase C-terminal domain LNQ41_007810 PF08298 PrkA AAA domain LNQ41_007820 PF06629 MltA-interacting protein MipA LNQ41_007825 PF00884 Sulfatase LNQ41_007830 PF01263 Aldose 1-epimerase LNQ41_007835 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LNQ41_007835 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LNQ41_007840 PF01641 SelR domain LNQ41_007845 PF07023 Protein of unknown function (DUF1315) LNQ41_007850 PF00857 Isochorismatase family LNQ41_007855 PF00710 Asparaginase, N-terminal LNQ41_007855 PF17763 Glutaminase/Asparaginase C-terminal domain LNQ41_007860 PF01343 Peptidase family S49 LNQ41_007865 PF00881 Nitroreductase family LNQ41_007870 PF02769 AIR synthase related protein, C-terminal domain LNQ41_007870 PF00586 AIR synthase related protein, N-terminal domain LNQ41_007875 PF01131 DNA topoisomerase LNQ41_007875 PF01751 Toprim domain LNQ41_007880 PF07383 Protein of unknown function (DUF1496) LNQ41_007885 PF00293 NUDIX domain LNQ41_007890 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ41_007900 PF03466 LysR substrate binding domain LNQ41_007900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_007925 PF01842 ACT domain LNQ41_007925 PF00551 Formyl transferase LNQ41_007930 PF02810 SEC-C motif LNQ41_007935 PF01734 Patatin-like phospholipase LNQ41_007940 PF00072 Response regulator receiver domain LNQ41_007945 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNQ41_007945 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNQ41_007945 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNQ41_007950 PF00816 H-NS histone family LNQ41_007955 PF00265 Thymidine kinase LNQ41_007960 PF00171 Aldehyde dehydrogenase family LNQ41_007960 PF00465 Iron-containing alcohol dehydrogenase LNQ41_007965 PF01914 MarC family integral membrane protein LNQ41_007970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ41_007975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ41_007980 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_007985 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_007985 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ41_007990 PF00005 ABC transporter LNQ41_007990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ41_007995 PF00005 ABC transporter LNQ41_007995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ41_008000 PF04269 Protein of unknown function, DUF440 LNQ41_008005 PF13396 Phospholipase_D-nuclease N-terminal LNQ41_008005 PF13091 PLD-like domain LNQ41_008025 PF03795 YCII-related domain LNQ41_008040 PF00486 Transcriptional regulatory protein, C terminal LNQ41_008050 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ41_008050 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ41_008055 PF13953 PapC C-terminal domain LNQ41_008055 PF13954 PapC N-terminal domain LNQ41_008055 PF00577 Outer membrane usher protein LNQ41_008075 PF03544 Gram-negative bacterial TonB protein C-terminal LNQ41_008080 PF03061 Thioesterase superfamily LNQ41_008085 PF04279 Intracellular septation protein A LNQ41_008090 PF01740 STAS domain LNQ41_008090 PF00916 Sulfate permease family LNQ41_008100 PF03692 Putative zinc- or iron-chelating domain LNQ41_008105 PF03922 OmpW family LNQ41_008115 PF00290 Tryptophan synthase alpha chain LNQ41_008120 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_008125 PF00218 Indole-3-glycerol phosphate synthase LNQ41_008125 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LNQ41_008130 PF02885 Glycosyl transferase family, helical bundle domain LNQ41_008130 PF00591 Glycosyl transferase family, a/b domain LNQ41_008135 PF00117 Glutamine amidotransferase class-I LNQ41_008140 PF04715 Anthranilate synthase component I, N terminal region LNQ41_008140 PF00425 chorismate binding enzyme LNQ41_008145 PF02811 PHP domain LNQ41_008150 PF01300 Telomere recombination LNQ41_008155 PF00849 RNA pseudouridylate synthase LNQ41_008155 PF01479 S4 domain LNQ41_008160 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LNQ41_008165 PF00106 short chain dehydrogenase LNQ41_008170 PF01343 Peptidase family S49 LNQ41_008170 PF08496 Peptidase family S49 N-terminal LNQ41_008175 PF10692 Protein of unknown function (DUF2498) LNQ41_008180 PF08272 Topoisomerase I zinc-ribbon-like LNQ41_008180 PF01131 DNA topoisomerase LNQ41_008180 PF01751 Toprim domain LNQ41_008180 PF01396 Topoisomerase DNA binding C4 zinc finger LNQ41_008185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_008185 PF03466 LysR substrate binding domain LNQ41_008200 PF00330 Aconitase family (aconitate hydratase) LNQ41_008200 PF00694 Aconitase C-terminal domain LNQ41_008205 PF00925 GTP cyclohydrolase II LNQ41_008210 PF01569 PAP2 superfamily LNQ41_008215 PF06305 Lipopolysaccharide assembly protein A domain LNQ41_008220 PF18073 Rubredoxin metal binding domain LNQ41_008230 PF07338 Protein of unknown function (DUF1471) LNQ41_008235 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LNQ41_008240 PF01253 Translation initiation factor SUI1 LNQ41_008245 PF05433 Glycine zipper 2TM domain LNQ41_008250 PF00923 Transaldolase/Fructose-6-phosphate aldolase LNQ41_008255 PF00563 EAL domain LNQ41_008255 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_008255 PF05231 MASE1 LNQ41_008255 PF08447 PAS fold LNQ41_008255 PF08448 PAS fold LNQ41_008255 PF13426 PAS domain LNQ41_008260 PF08206 Ribonuclease B OB domain LNQ41_008260 PF00773 RNB domain LNQ41_008260 PF00575 S1 RNA binding domain LNQ41_008265 PF10576 Iron-sulfur binding domain of endonuclease III LNQ41_008265 PF00633 Helix-hairpin-helix motif LNQ41_008265 PF00730 HhH-GPD superfamily base excision DNA repair protein LNQ41_008270 PF02508 Rnf-Nqr subunit, membrane protein LNQ41_008275 PF04205 FMN-binding domain LNQ41_008280 PF03116 NQR2, RnfD, RnfE family LNQ41_008285 PF06445 GyrI-like small molecule binding domain LNQ41_008285 PF12833 Helix-turn-helix domain LNQ41_008290 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNQ41_008290 PF13237 4Fe-4S dicluster domain LNQ41_008290 PF13375 RnfC Barrel sandwich hybrid domain LNQ41_008290 PF10531 SLBB domain LNQ41_008295 PF04060 Putative Fe-S cluster LNQ41_008300 PF02508 Rnf-Nqr subunit, membrane protein LNQ41_008305 PF10754 Protein of unknown function (DUF2569) LNQ41_008310 PF01268 Formate--tetrahydrofolate ligase LNQ41_008315 PF03848 Tellurite resistance protein TehB LNQ41_008315 PF09313 Domain of unknown function (DUF1971) LNQ41_008320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ41_008320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LNQ41_008325 PF13593 SBF-like CPA transporter family (DUF4137) LNQ41_008330 PF00962 Adenosine/AMP deaminase LNQ41_008335 PF06097 Bacterial protein of unknown function (DUF945) LNQ41_008340 PF01238 Phosphomannose isomerase type I LNQ41_008345 PF10415 Fumarase C C-terminus LNQ41_008345 PF00206 Lyase LNQ41_008350 PF05472 DNA replication terminus site-binding protein (Ter protein) LNQ41_008355 PF00480 ROK family LNQ41_008365 PF00654 Voltage gated chloride channel LNQ41_008370 PF06649 Protein of unknown function (DUF1161) LNQ41_008375 PF06932 Protein of unknown function (DUF1283) LNQ41_008380 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LNQ41_008385 PF00106 short chain dehydrogenase LNQ41_008390 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ41_008425 PF01048 Phosphorylase superfamily LNQ41_008425 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LNQ41_008455 PF14864 Alkyl sulfatase C-terminal LNQ41_008455 PF14863 Alkyl sulfatase dimerisation LNQ41_008455 PF00753 Metallo-beta-lactamase superfamily LNQ41_008475 PF13419 Haloacid dehalogenase-like hydrolase LNQ41_008485 PF06445 GyrI-like small molecule binding domain LNQ41_008490 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LNQ41_008490 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LNQ41_008495 PF13545 Crp-like helix-turn-helix domain LNQ41_008495 PF00027 Cyclic nucleotide-binding domain LNQ41_008500 PF00582 Universal stress protein family LNQ41_008510 PF08220 DeoR-like helix-turn-helix domain LNQ41_008510 PF00455 DeoR C terminal sensor domain LNQ41_008515 PF03611 PTS system sugar-specific permease component LNQ41_008520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ41_008525 PF00596 Class II Aldolase and Adducin N-terminal domain LNQ41_008530 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LNQ41_008535 PF01261 Xylose isomerase-like TIM barrel LNQ41_008540 PF02233 NAD(P) transhydrogenase beta subunit LNQ41_008545 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LNQ41_008545 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LNQ41_008545 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LNQ41_008550 PF07338 Protein of unknown function (DUF1471) LNQ41_008555 PF13520 Amino acid permease LNQ41_008565 PF00486 Transcriptional regulatory protein, C terminal LNQ41_008565 PF00072 Response regulator receiver domain LNQ41_008570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_008570 PF00672 HAMP domain LNQ41_008570 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_008575 PF00080 Copper/zinc superoxide dismutase (SODC) LNQ41_008585 PF12833 Helix-turn-helix domain LNQ41_008590 PF01161 Phosphatidylethanolamine-binding protein LNQ41_008600 PF00089 Trypsin LNQ41_008605 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LNQ41_008605 PF00271 Helicase conserved C-terminal domain LNQ41_008605 PF04408 Helicase associated domain (HA2) LNQ41_008605 PF11898 Domain of unknown function (DUF3418) LNQ41_008605 PF00270 DEAD/DEAH box helicase LNQ41_008610 PF02525 Flavodoxin-like fold LNQ41_008615 PF07027 Protein of unknown function (DUF1318) LNQ41_008620 PF13617 YnbE-like lipoprotein LNQ41_008630 PF11739 Dicarboxylate transport LNQ41_008635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ41_008635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ41_008640 PF03724 META domain LNQ41_008645 PF03891 Domain of unknown function (DUF333) LNQ41_008650 PF02308 MgtC family LNQ41_008655 PF00893 Small Multidrug Resistance protein LNQ41_008660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ41_008660 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LNQ41_008660 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LNQ41_008660 PF10371 Domain of unknown function LNQ41_008660 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LNQ41_008665 PF01171 PP-loop family LNQ41_008670 PF01544 CorA-like Mg2+ transporter protein LNQ41_008675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ41_008680 PF00246 Zinc carboxypeptidase LNQ41_008685 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LNQ41_008685 PF13378 Enolase C-terminal domain-like LNQ41_008690 PF08534 Redoxin LNQ41_008695 PF00158 Sigma-54 interaction domain LNQ41_008695 PF18024 Helix-turn-helix domain LNQ41_008700 PF09722 Protein of unknown function (DUF2384) LNQ41_008705 PF08808 RES domain LNQ41_008710 PF05128 Domain of unknown function (DUF697) LNQ41_008715 PF04317 YcjX-like family, DUF463 LNQ41_008725 PF04024 PspC domain LNQ41_008730 PF06667 Phage shock protein B LNQ41_008735 PF04012 PspA/IM30 family LNQ41_008740 PF00158 Sigma-54 interaction domain LNQ41_008740 PF02954 Bacterial regulatory protein, Fis family LNQ41_008750 PF02917 Pertussis toxin, subunit 1 LNQ41_008755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ41_008760 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_008765 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_008765 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ41_008770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ41_008770 PF00005 ABC transporter LNQ41_008775 PF00005 ABC transporter LNQ41_008785 PF00854 POT family LNQ41_008795 PF01556 DnaJ C terminal domain LNQ41_008795 PF00226 DnaJ domain LNQ41_008805 PF04893 Yip1 domain LNQ41_008815 PF11656 YjbD family (DUF3811) LNQ41_008820 PF00043 Glutathione S-transferase, C-terminal domain LNQ41_008820 PF02798 Glutathione S-transferase, N-terminal domain LNQ41_008825 PF08543 Phosphomethylpyrimidine kinase LNQ41_008830 PF00579 tRNA synthetases class I (W and Y) LNQ41_008830 PF01479 S4 domain LNQ41_008835 PF01243 Pyridoxamine 5'-phosphate oxidase LNQ41_008835 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LNQ41_008840 PF03702 Anhydro-N-acetylmuramic acid kinase LNQ41_008845 PF05433 Glycine zipper 2TM domain LNQ41_008850 PF01047 MarR family LNQ41_008860 PF00248 Aldo/keto reductase family LNQ41_008865 PF06945 Protein of unknown function (DUF1289) LNQ41_008870 PF08019 Phosphoethanolamine transferase EptA/EptB LNQ41_008870 PF00884 Sulfatase LNQ41_008875 PF16925 Tetracyclin repressor-like, C-terminal domain LNQ41_008875 PF00440 Bacterial regulatory proteins, tetR family LNQ41_008880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNQ41_008885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNQ41_008890 PF00929 Exonuclease LNQ41_008895 PF00462 Glutaredoxin LNQ41_008900 PF00877 NlpC/P60 family LNQ41_008905 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNQ41_008905 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNQ41_008915 PF00356 Bacterial regulatory proteins, lacI family LNQ41_008920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_008920 PF03466 LysR substrate binding domain LNQ41_008925 PF07690 Major Facilitator Superfamily LNQ41_008935 PF00677 Lumazine binding domain LNQ41_008940 PF01554 MatE LNQ41_008960 PF02887 Pyruvate kinase, alpha/beta domain LNQ41_008960 PF00224 Pyruvate kinase, barrel domain LNQ41_008965 PF04728 Lipoprotein leucine-zipper LNQ41_008970 PF17969 L,D-transpeptidase C-terminal domain LNQ41_008970 PF03734 L,D-transpeptidase catalytic domain LNQ41_008970 PF01476 LysM domain LNQ41_008975 PF02657 Fe-S metabolism associated domain LNQ41_008980 PF00266 Aminotransferase class-V LNQ41_008985 PF01458 Uncharacterized protein family (UPF0051) LNQ41_008990 PF00005 ABC transporter LNQ41_008995 PF01458 Uncharacterized protein family (UPF0051) LNQ41_009000 PF01521 Iron-sulphur cluster biosynthesis LNQ41_009005 PF03061 Thioesterase superfamily LNQ41_009010 PF02913 FAD linked oxidases, C-terminal domain LNQ41_009010 PF13183 4Fe-4S dicluster domain LNQ41_009010 PF01565 FAD binding domain LNQ41_009015 PF01594 AI-2E family transporter LNQ41_009025 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ41_009025 PF00391 PEP-utilising enzyme, mobile domain LNQ41_009025 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LNQ41_009030 PF03618 Kinase/pyrophosphorylase LNQ41_009035 PF00793 DAHP synthetase I family LNQ41_009040 PF10636 Hemin uptake protein hemP LNQ41_009045 PF07715 TonB-dependent Receptor Plug Domain LNQ41_009045 PF00593 TonB dependent receptor LNQ41_009050 PF05171 Haemin-degrading HemS.ChuX domain LNQ41_009055 PF01497 Periplasmic binding protein LNQ41_009060 PF01032 FecCD transport family LNQ41_009065 PF00005 ABC transporter LNQ41_009070 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LNQ41_009075 PF03099 Biotin/lipoate A/B protein ligase family LNQ41_009075 PF10437 Bacterial lipoate protein ligase C-terminus LNQ41_009080 PF00877 NlpC/P60 family LNQ41_009090 PF00892 EamA-like transporter family LNQ41_009095 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LNQ41_009100 PF01522 Polysaccharide deacetylase LNQ41_009105 PF00551 Formyl transferase LNQ41_009105 PF02911 Formyl transferase, C-terminal domain LNQ41_009105 PF01370 NAD dependent epimerase/dehydratase family LNQ41_009110 PF00535 Glycosyl transferase family 2 LNQ41_009115 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ41_009120 PF00005 ABC transporter LNQ41_009125 PF01032 FecCD transport family LNQ41_009160 PF04606 Ogr/Delta-like zinc finger LNQ41_009170 PF00216 Bacterial DNA-binding protein LNQ41_009175 PF03483 B3/4 domain LNQ41_009175 PF03484 tRNA synthetase B5 domain LNQ41_009175 PF03147 Ferredoxin-fold anticodon binding domain LNQ41_009175 PF01588 Putative tRNA binding domain LNQ41_009175 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LNQ41_009180 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LNQ41_009180 PF01409 tRNA synthetases class II core domain (F) LNQ41_009185 PF00453 Ribosomal protein L20 LNQ41_009190 PF01632 Ribosomal protein L35 LNQ41_009195 PF00707 Translation initiation factor IF-3, C-terminal domain LNQ41_009195 PF05198 Translation initiation factor IF-3, N-terminal domain LNQ41_009200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ41_009200 PF03129 Anticodon binding domain LNQ41_009200 PF02824 TGS domain LNQ41_009200 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNQ41_009230 PF01914 MarC family integral membrane protein LNQ41_009235 PF01464 Transglycosylase SLT domain LNQ41_009240 PF01297 Zinc-uptake complex component A periplasmic LNQ41_009245 PF00005 ABC transporter LNQ41_009250 PF00950 ABC 3 transport family LNQ41_009255 PF00950 ABC 3 transport family LNQ41_009260 PF03881 Fructosamine kinase LNQ41_009265 PF14002 YniB-like protein LNQ41_009270 PF13419 Haloacid dehalogenase-like hydrolase LNQ41_009275 PF04307 LexA-binding, inner membrane-associated putative hydrolase LNQ41_009280 PF00375 Sodium:dicarboxylate symporter family LNQ41_009285 PF01510 N-acetylmuramoyl-L-alanine amidase LNQ41_009290 PF01614 Bacterial transcriptional regulator LNQ41_009290 PF09339 IclR helix-turn-helix domain LNQ41_009295 PF07690 Major Facilitator Superfamily LNQ41_009305 PF01435 Peptidase family M48 LNQ41_009310 PF03572 Peptidase family S41 LNQ41_009310 PF00595 PDZ domain LNQ41_009310 PF11818 C-terminal domain of tail specific protease (DUF3340) LNQ41_009310 PF17804 Tail specific protease N-terminal domain LNQ41_009315 PF04352 ProQ/FINO family LNQ41_009315 PF17516 ProQ C-terminal domain LNQ41_009320 PF13185 GAF domain LNQ41_009325 PF04403 Paraquat-inducible protein A LNQ41_009330 PF02470 MlaD protein LNQ41_009335 PF00563 EAL domain LNQ41_009335 PF01590 GAF domain LNQ41_009335 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_009335 PF00360 Phytochrome region LNQ41_009340 PF07351 Protein of unknown function (DUF1480) LNQ41_009365 PF05643 Putative bacterial lipoprotein (DUF799) LNQ41_009375 PF03783 Curli production assembly/transport component CsgG LNQ41_009380 PF10753 Toxin GhoT_OrtT LNQ41_009400 PF00144 Beta-lactamase LNQ41_009410 PF10709 Protein of unknown function (DUF2511) LNQ41_009415 PF05425 Copper resistance protein D LNQ41_009420 PF04234 CopC domain LNQ41_009425 PF00210 Ferritin-like domain LNQ41_009430 PF06440 DNA polymerase III, theta subunit LNQ41_009435 PF00561 alpha/beta hydrolase fold LNQ41_009440 PF00929 Exonuclease LNQ41_009445 PF00326 Prolyl oligopeptidase family LNQ41_009445 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LNQ41_009450 PF13995 YebF-like protein LNQ41_009455 PF04266 ASCH domain LNQ41_009460 PF07130 YebG protein LNQ41_009465 PF03880 DbpA RNA binding domain LNQ41_009465 PF00270 DEAD/DEAH box helicase LNQ41_009465 PF00271 Helicase conserved C-terminal domain LNQ41_009470 PF02222 ATP-grasp domain LNQ41_009475 PF03701 Uncharacterised protein family (UPF0181) LNQ41_009480 PF04715 Anthranilate synthase component I, N terminal region LNQ41_009480 PF00425 chorismate binding enzyme LNQ41_009485 PF00293 NUDIX domain LNQ41_009490 PF03313 Serine dehydratase alpha chain LNQ41_009490 PF03315 Serine dehydratase beta chain LNQ41_009495 PF03741 Integral membrane protein TerC family LNQ41_009495 PF03471 Transporter associated domain LNQ41_009500 PF03830 PTS system sorbose subfamily IIB component LNQ41_009500 PF03610 PTS system fructose IIA component LNQ41_009505 PF03609 PTS system sorbose-specific iic component LNQ41_009510 PF03613 PTS system mannose/fructose/sorbose family IID component LNQ41_009515 PF06173 Protein of unknown function (DUF986) LNQ41_009520 PF02659 Putative manganese efflux pump LNQ41_009525 PF02441 Flavoprotein LNQ41_009540 PF02770 Acyl-CoA dehydrogenase, middle domain LNQ41_009540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNQ41_009540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNQ41_009550 PF05199 GMC oxidoreductase LNQ41_009550 PF00732 GMC oxidoreductase LNQ41_009555 PF00501 AMP-binding enzyme LNQ41_009555 PF13193 AMP-binding enzyme C-terminal domain LNQ41_009555 PF00668 Condensation domain LNQ41_009555 PF00550 Phosphopantetheine attachment site LNQ41_009560 PF07690 Major Facilitator Superfamily LNQ41_009580 PF13847 Methyltransferase domain LNQ41_009585 PF00905 Penicillin binding protein transpeptidase domain LNQ41_009585 PF03717 Penicillin-binding Protein dimerisation domain LNQ41_009590 PF02578 Multi-copper polyphenol oxidoreductase laccase LNQ41_009595 PF00313 'Cold-shock' DNA-binding domain LNQ41_009600 PF10736 Protein of unknown function (DUF2627) LNQ41_009605 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LNQ41_009610 PF00324 Amino acid permease LNQ41_009625 PF13974 YebO-like protein LNQ41_009630 PF13998 MgrB protein LNQ41_009635 PF13996 YobH-like protein LNQ41_009640 PF10964 Protein of unknown function (DUF2766) LNQ41_009645 PF12833 Helix-turn-helix domain LNQ41_009660 PF13520 Amino acid permease LNQ41_009665 PF00664 ABC transporter transmembrane region LNQ41_009665 PF00005 ABC transporter LNQ41_009675 PF00563 EAL domain LNQ41_009675 PF01590 GAF domain LNQ41_009675 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_009675 PF00360 Phytochrome region LNQ41_009680 PF03372 Endonuclease/Exonuclease/phosphatase family LNQ41_009690 PF06411 HdeA/HdeB family LNQ41_009695 PF07478 D-ala D-ala ligase C-terminus LNQ41_009695 PF01820 D-ala D-ala ligase N-terminus LNQ41_009710 PF08241 Methyltransferase domain LNQ41_009715 PF00313 'Cold-shock' DNA-binding domain LNQ41_009720 PF00313 'Cold-shock' DNA-binding domain LNQ41_009730 PF04794 YdjC-like protein LNQ41_009735 PF12833 Helix-turn-helix domain LNQ41_009735 PF07883 Cupin domain LNQ41_009740 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LNQ41_009745 PF00232 Glycosyl hydrolase family 1 LNQ41_009750 PF02378 Phosphotransferase system, EIIC LNQ41_009755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ41_009760 PF00849 RNA pseudouridylate synthase LNQ41_009760 PF01479 S4 domain LNQ41_009770 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LNQ41_009775 PF03553 Na+/H+ antiporter family LNQ41_009785 PF13520 Amino acid permease LNQ41_009800 PF00849 RNA pseudouridylate synthase LNQ41_009805 PF00282 Pyridoxal-dependent decarboxylase conserved domain LNQ41_009810 PF13520 Amino acid permease LNQ41_009815 PF04960 Glutaminase LNQ41_009845 PF13673 Acetyltransferase (GNAT) domain LNQ41_009855 PF00034 Cytochrome c LNQ41_009855 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LNQ41_009865 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_009870 PF00005 ABC transporter LNQ41_009880 PF02203 Tar ligand binding domain homologue LNQ41_009880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ41_009880 PF00672 HAMP domain LNQ41_009885 PF00665 Integrase core domain LNQ41_009885 PF13333 Integrase core domain LNQ41_009885 PF13276 HTH-like domain LNQ41_009900 PF00589 Phage integrase family LNQ41_009900 PF02899 Phage integrase, N-terminal SAM-like domain LNQ41_009905 PF01653 NAD-dependent DNA ligase adenylation domain LNQ41_009905 PF03120 NAD-dependent DNA ligase OB-fold domain LNQ41_009905 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LNQ41_009905 PF12826 Helix-hairpin-helix motif LNQ41_009905 PF00533 BRCA1 C Terminus (BRCT) domain LNQ41_009910 PF07022 Bacteriophage CI repressor helix-turn-helix domain LNQ41_009910 PF16452 Bacteriophage CI repressor C-terminal domain LNQ41_009920 PF06892 Phage regulatory protein CII (CP76) LNQ41_009940 PF05840 Bacteriophage replication gene A protein (GPA) LNQ41_009955 PF02661 Fic/DOC family LNQ41_009955 PF17841 BID domain of Bartonella effector protein (Bep) LNQ41_010050 PF07484 Phage Tail Collar Domain LNQ41_010055 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LNQ41_010095 PF04606 Ogr/Delta-like zinc finger LNQ41_010115 PF01066 CDP-alcohol phosphatidyltransferase LNQ41_010120 PF01541 GIY-YIG catalytic domain LNQ41_010120 PF02151 UvrB/uvrC motif LNQ41_010120 PF08459 UvrC Helix-hairpin-helix N-terminal LNQ41_010125 PF00196 Bacterial regulatory proteins, luxR family LNQ41_010125 PF00072 Response regulator receiver domain LNQ41_010130 PF10769 Protein of unknown function (DUF2594) LNQ41_010150 PF00324 Amino acid permease LNQ41_010155 PF01276 Orn/Lys/Arg decarboxylase, major domain LNQ41_010155 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNQ41_010155 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LNQ41_010160 PF13520 Amino acid permease LNQ41_010165 PF18500 CadC C-terminal domain 1 LNQ41_010165 PF00486 Transcriptional regulatory protein, C terminal LNQ41_010170 PF00474 Sodium:solute symporter family LNQ41_010175 PF01619 Proline dehydrogenase LNQ41_010175 PF14850 DNA-binding domain of Proline dehydrogenase LNQ41_010175 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LNQ41_010175 PF00171 Aldehyde dehydrogenase family LNQ41_010180 PF00005 ABC transporter LNQ41_010185 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_010190 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_010195 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_010200 PF02899 Phage integrase, N-terminal SAM-like domain LNQ41_010205 PF04542 Sigma-70 region 2 LNQ41_010205 PF04539 Sigma-70 region 3 LNQ41_010205 PF04545 Sigma-70, region 4 LNQ41_010210 PF00700 Bacterial flagellin C-terminal helical region LNQ41_010210 PF08884 Flagellin D3 domain LNQ41_010210 PF00669 Bacterial flagellin N-terminal helical region LNQ41_010215 PF00669 Bacterial flagellin N-terminal helical region LNQ41_010215 PF00700 Bacterial flagellin C-terminal helical region LNQ41_010215 PF08884 Flagellin D3 domain LNQ41_010220 PF07196 Flagellin hook IN motif LNQ41_010220 PF07195 Flagellar hook-associated protein 2 C-terminus LNQ41_010220 PF02465 Flagellar hook-associated protein 2 N-terminus LNQ41_010225 PF02561 Flagellar protein FliS LNQ41_010230 PF05400 Flagellar protein FliT LNQ41_010235 PF12833 Helix-turn-helix domain LNQ41_010240 PF01966 HD domain LNQ41_010245 PF07885 Ion channel LNQ41_010245 PF02254 TrkA-N domain LNQ41_010250 PF01223 DNA/RNA non-specific endonuclease LNQ41_010260 PF02049 Flagellar hook-basal body complex protein FliE LNQ41_010265 PF01514 Secretory protein of YscJ/FliF family LNQ41_010265 PF08345 Flagellar M-ring protein C-terminal LNQ41_010270 PF01706 FliG C-terminal domain LNQ41_010270 PF14841 FliG middle domain LNQ41_010270 PF14842 FliG N-terminal domain LNQ41_010275 PF02108 Flagellar assembly protein FliH LNQ41_010280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ41_010280 PF18269 T3SS EscN ATPase C-terminal domain LNQ41_010285 PF02050 Flagellar FliJ protein LNQ41_010290 PF02120 Flagellar hook-length control protein FliK LNQ41_010295 PF03748 Flagellar basal body-associated protein FliL LNQ41_010300 PF02154 Flagellar motor switch protein FliM LNQ41_010300 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ41_010305 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNQ41_010305 PF16973 Flagellar motor switch protein FliN N-terminal LNQ41_010310 PF04347 Flagellar biosynthesis protein, FliO LNQ41_010315 PF00813 FliP family LNQ41_010320 PF01313 Bacterial export proteins, family 3 LNQ41_010325 PF01311 Bacterial export proteins, family 1 LNQ41_010330 PF00669 Bacterial flagellin N-terminal helical region LNQ41_010335 PF00460 Flagella basal body rod protein LNQ41_010335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ41_010340 PF10135 Rod binding protein LNQ41_010340 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LNQ41_010345 PF02119 Flagellar P-ring protein LNQ41_010350 PF02107 Flagellar L-ring protein LNQ41_010355 PF00460 Flagella basal body rod protein LNQ41_010355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ41_010360 PF00460 Flagella basal body rod protein LNQ41_010360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ41_010365 PF07559 Flagellar basal body protein FlaE LNQ41_010365 PF00460 Flagella basal body rod protein LNQ41_010365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ41_010370 PF13861 FlgD Tudor-like domain LNQ41_010370 PF13860 FlgD Ig-like domain LNQ41_010370 PF03963 Flagellar hook capping protein - N-terminal region LNQ41_010375 PF00460 Flagella basal body rod protein LNQ41_010375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNQ41_010380 PF00460 Flagella basal body rod protein LNQ41_010385 PF13144 Chaperone for flagella basal body P-ring formation LNQ41_010385 PF17656 FlgA N-terminal domain LNQ41_010390 PF04316 Anti-sigma-28 factor, FlgM LNQ41_010395 PF05130 FlgN protein LNQ41_010400 PF06366 Flagellar protein FlhE LNQ41_010405 PF00771 FHIPEP family LNQ41_010410 PF01312 FlhB HrpN YscU SpaS Family LNQ41_010415 PF01483 Proprotein convertase P-domain LNQ41_010415 PF00082 Subtilase family LNQ41_010420 PF04344 Chemotaxis phosphatase, CheZ LNQ41_010425 PF00072 Response regulator receiver domain LNQ41_010430 PF01339 CheB methylesterase LNQ41_010430 PF00072 Response regulator receiver domain LNQ41_010435 PF01739 CheR methyltransferase, SAM binding domain LNQ41_010435 PF03705 CheR methyltransferase, all-alpha domain LNQ41_010440 PF00672 HAMP domain LNQ41_010440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ41_010440 PF02203 Tar ligand binding domain homologue LNQ41_010445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ41_010445 PF00672 HAMP domain LNQ41_010445 PF02203 Tar ligand binding domain homologue LNQ41_010450 PF01584 CheW-like domain LNQ41_010455 PF01584 CheW-like domain LNQ41_010455 PF09078 CheY binding LNQ41_010455 PF02895 Signal transducing histidine kinase, homodimeric domain LNQ41_010455 PF01627 Hpt domain LNQ41_010455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_010460 PF13677 Membrane MotB of proton-channel complex MotA/MotB LNQ41_010460 PF00691 OmpA family LNQ41_010465 PF01618 MotA/TolQ/ExbB proton channel family LNQ41_010470 PF05280 Flagellar transcriptional activator (FlhC) LNQ41_010475 PF05247 Flagellar transcriptional activator (FlhD) LNQ41_010480 PF00582 Universal stress protein family LNQ41_010485 PF02308 MgtC family LNQ41_010490 PF00672 HAMP domain LNQ41_010490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ41_010490 PF02203 Tar ligand binding domain homologue LNQ41_010495 PF10781 Dextransucrase DSRB LNQ41_010500 PF00313 'Cold-shock' DNA-binding domain LNQ41_010510 PF00356 Bacterial regulatory proteins, lacI family LNQ41_010515 PF02929 Beta galactosidase small chain LNQ41_010515 PF02837 Glycosyl hydrolases family 2, sugar binding domain LNQ41_010515 PF16353 Domain of unknown function(DUF4981) LNQ41_010515 PF00703 Glycosyl hydrolases family 2 LNQ41_010515 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LNQ41_010520 PF00698 Acyl transferase domain LNQ41_010520 PF00550 Phosphopantetheine attachment site LNQ41_010520 PF08659 KR domain LNQ41_010520 PF14765 Polyketide synthase dehydratase LNQ41_010520 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ41_010520 PF16197 Ketoacyl-synthetase C-terminal extension LNQ41_010520 PF00107 Zinc-binding dehydrogenase LNQ41_010520 PF08240 Alcohol dehydrogenase GroES-like domain LNQ41_010520 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ41_010525 PF10777 Inner membrane protein YlaC LNQ41_010535 PF14001 YdfZ protein LNQ41_010570 PF01024 Colicin pore forming domain LNQ41_010575 PF03526 Colicin E1 (microcin) immunity protein LNQ41_010595 PF08401 Domain of unknown function (DUF1738) LNQ41_010595 PF13362 Toprim domain LNQ41_010595 PF18818 Metallopeptidase superfamily domain LNQ41_010640 PF12323 Helix-turn-helix domain LNQ41_010640 PF01385 Probable transposase LNQ41_010640 PF07282 Putative transposase DNA-binding domain LNQ41_010645 PF01797 Transposase IS200 like LNQ41_010705 PF03245 Bacteriophage Rz lysis protein LNQ41_010710 PF00959 Phage lysozyme LNQ41_010715 PF04971 Bacteriophage P21 holin S LNQ41_010745 PF07102 Protein of unknown function (DUF1364) LNQ41_010765 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LNQ41_010765 PF17854 FtsK alpha domain LNQ41_010765 PF09397 Ftsk gamma domain LNQ41_010765 PF01580 FtsK/SpoIIIE family LNQ41_010800 PF01381 Helix-turn-helix LNQ41_010800 PF00717 Peptidase S24-like LNQ41_010855 PF06167 Glucose-regulated metallo-peptidase M90 LNQ41_010875 PF01648 4'-phosphopantetheinyl transferase superfamily LNQ41_010875 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LNQ41_010880 PF00939 Sodium:sulfate symporter transmembrane region LNQ41_010885 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LNQ41_010890 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase LNQ41_010895 PF04223 Citrate lyase, alpha subunit (CitF) LNQ41_010900 PF03328 HpcH/HpaI aldolase/citrate lyase family LNQ41_010905 PF06857 Malonate decarboxylase delta subunit (MdcD) LNQ41_010910 PF08218 Citrate lyase ligase C-terminal domain LNQ41_010915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_010915 PF00989 PAS fold LNQ41_010915 PF17203 Single cache domain 3 LNQ41_010915 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LNQ41_010920 PF12431 Transcriptional regulator LNQ41_010920 PF00072 Response regulator receiver domain LNQ41_010925 PF00072 Response regulator receiver domain LNQ41_010925 PF00196 Bacterial regulatory proteins, luxR family LNQ41_010930 PF07730 Histidine kinase LNQ41_010930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_010930 PF05231 MASE1 LNQ41_010935 PF07690 Major Facilitator Superfamily LNQ41_010945 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_010950 PF00005 ABC transporter LNQ41_010950 PF08402 TOBE domain LNQ41_010965 PF00589 Phage integrase family LNQ41_010965 PF13356 Arm DNA-binding domain LNQ41_010980 PF13693 Winged helix-turn-helix DNA-binding LNQ41_011020 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LNQ41_011040 PF04335 VirB8 protein LNQ41_011045 PF03524 Conjugal transfer protein LNQ41_011050 PF03743 Bacterial conjugation TrbI-like protein LNQ41_011055 PF00437 Type II/IV secretion system protein LNQ41_011070 PF08401 Domain of unknown function (DUF1738) LNQ41_011070 PF18818 Metallopeptidase superfamily domain LNQ41_011100 PF04363 Protein of unknown function (DUF496) LNQ41_011105 PF04632 Fusaric acid resistance protein family LNQ41_011115 PF00929 Exonuclease LNQ41_011115 PF08411 Exonuclease C-terminal LNQ41_011120 PF13520 Amino acid permease LNQ41_011125 PF07715 TonB-dependent Receptor Plug Domain LNQ41_011125 PF00593 TonB dependent receptor LNQ41_011130 PF00005 ABC transporter LNQ41_011135 PF01032 FecCD transport family LNQ41_011145 PF00324 Amino acid permease LNQ41_011150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_011150 PF03466 LysR substrate binding domain LNQ41_011160 PF03601 Conserved hypothetical protein 698 LNQ41_011165 PF01261 Xylose isomerase-like TIM barrel LNQ41_011170 PF02378 Phosphotransferase system, EIIC LNQ41_011170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNQ41_011175 PF00294 pfkB family carbohydrate kinase LNQ41_011180 PF00381 PTS HPr component phosphorylation site LNQ41_011180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ41_011185 PF00293 NUDIX domain LNQ41_011190 PF03264 NapC/NirT cytochrome c family, N-terminal region LNQ41_011195 PF01568 Molydopterin dinucleotide binding domain LNQ41_011195 PF18364 Molybdopterin oxidoreductase N-terminal domain LNQ41_011195 PF00384 Molybdopterin oxidoreductase LNQ41_011200 PF03692 Putative zinc- or iron-chelating domain LNQ41_011205 PF03222 Tryptophan/tyrosine permease family LNQ41_011210 PF01132 Elongation factor P (EF-P) OB domain LNQ41_011210 PF08207 Elongation factor P (EF-P) KOW-like domain LNQ41_011210 PF09285 Elongation factor P, C-terminal LNQ41_011215 PF03786 D-mannonate dehydratase (UxuA) LNQ41_011220 PF01232 Mannitol dehydrogenase Rossmann domain LNQ41_011220 PF08125 Mannitol dehydrogenase C-terminal domain LNQ41_011230 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNQ41_011230 PF07683 Cobalamin synthesis protein cobW C-terminal domain LNQ41_011235 PF01569 PAP2 superfamily LNQ41_011240 PF00877 NlpC/P60 family LNQ41_011245 PF00563 EAL domain LNQ41_011245 PF12792 CSS motif domain associated with EAL LNQ41_011250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNQ41_011255 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_011260 PF12911 N-terminal TM domain of oligopeptide transport permease C LNQ41_011260 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_011265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNQ41_011265 PF00005 ABC transporter LNQ41_011270 PF13989 YejG-like protein LNQ41_011275 PF07690 Major Facilitator Superfamily LNQ41_011280 PF01479 S4 domain LNQ41_011280 PF00849 RNA pseudouridylate synthase LNQ41_011285 PF04851 Type III restriction enzyme, res subunit LNQ41_011285 PF00271 Helicase conserved C-terminal domain LNQ41_011290 PF01386 Ribosomal L25p family LNQ41_011295 PF04245 37-kD nucleoid-associated bacterial protein LNQ41_011300 PF07208 Protein of unknown function (DUF1414) LNQ41_011305 PF11893 Domain of unknown function (DUF3413) LNQ41_011305 PF00884 Sulfatase LNQ41_011325 PF06183 DinI-like family LNQ41_011330 PF12706 Beta-lactamase superfamily domain LNQ41_011335 PF00144 Beta-lactamase LNQ41_011340 PF13302 Acetyltransferase (GNAT) domain LNQ41_011355 PF00267 Gram-negative porin LNQ41_011360 PF07690 Major Facilitator Superfamily LNQ41_011365 PF16359 RcsD-ABL domain LNQ41_011365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_011365 PF01627 Hpt domain LNQ41_011370 PF00196 Bacterial regulatory proteins, luxR family LNQ41_011370 PF00072 Response regulator receiver domain LNQ41_011375 PF00072 Response regulator receiver domain LNQ41_011375 PF09456 RcsC Alpha-Beta-Loop (ABL) LNQ41_011375 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_011375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_011380 PF00521 DNA gyrase/topoisomerase IV, subunit A LNQ41_011380 PF03989 DNA gyrase C-terminal domain, beta-propeller LNQ41_011390 PF03477 ATP cone domain LNQ41_011390 PF00317 Ribonucleotide reductase, all-alpha domain LNQ41_011390 PF02867 Ribonucleotide reductase, barrel domain LNQ41_011395 PF00268 Ribonucleotide reductase, small chain LNQ41_011400 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ41_011410 PF03974 Ecotin LNQ41_011415 PF00994 Probable molybdopterin binding domain LNQ41_011420 PF04138 GtrA-like protein LNQ41_011425 PF00535 Glycosyl transferase family 2 LNQ41_011435 PF03222 Tryptophan/tyrosine permease family LNQ41_011440 PF07437 YfaZ precursor LNQ41_011445 PF00199 Catalase LNQ41_011445 PF06628 Catalase-related immune-responsive LNQ41_011450 PF00501 AMP-binding enzyme LNQ41_011450 PF13193 AMP-binding enzyme C-terminal domain LNQ41_011455 PF13378 Enolase C-terminal domain-like LNQ41_011460 PF00378 Enoyl-CoA hydratase/isomerase LNQ41_011465 PF12697 Alpha/beta hydrolase family LNQ41_011470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ41_011470 PF16582 Middle domain of thiamine pyrophosphate LNQ41_011470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ41_011475 PF00425 chorismate binding enzyme LNQ41_011480 PF05957 Bacterial protein of unknown function (DUF883) LNQ41_011485 PF06496 Protein of unknown function (DUF1097) LNQ41_011490 PF00361 Proton-conducting membrane transporter LNQ41_011495 PF00361 Proton-conducting membrane transporter LNQ41_011500 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LNQ41_011500 PF00361 Proton-conducting membrane transporter LNQ41_011505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LNQ41_011510 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LNQ41_011515 PF12838 4Fe-4S dicluster domain LNQ41_011520 PF00146 NADH dehydrogenase LNQ41_011525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ41_011525 PF00384 Molybdopterin oxidoreductase LNQ41_011525 PF01568 Molydopterin dinucleotide binding domain LNQ41_011525 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LNQ41_011530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNQ41_011530 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNQ41_011530 PF10531 SLBB domain LNQ41_011540 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LNQ41_011540 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LNQ41_011545 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LNQ41_011550 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LNQ41_011555 PF03466 LysR substrate binding domain LNQ41_011555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_011560 PF00155 Aminotransferase class I and II LNQ41_011570 PF03600 Citrate transporter LNQ41_011570 PF02080 TrkA-C domain LNQ41_011580 PF03887 YfbU domain LNQ41_011585 PF04217 Protein of unknown function, DUF412 LNQ41_011590 PF00871 Acetokinase family LNQ41_011595 PF07085 DRTGG domain LNQ41_011595 PF01515 Phosphate acetyl/butaryl transferase LNQ41_011600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LNQ41_011600 PF00356 Bacterial regulatory proteins, lacI family LNQ41_011605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ41_011615 PF03611 PTS system sugar-specific permease component LNQ41_011620 PF00293 NUDIX domain LNQ41_011625 PF12850 Calcineurin-like phosphoesterase superfamily domain LNQ41_011635 PF02798 Glutathione S-transferase, N-terminal domain LNQ41_011635 PF00043 Glutathione S-transferase, C-terminal domain LNQ41_011640 PF08338 Domain of unknown function (DUF1731) LNQ41_011640 PF01370 NAD dependent epimerase/dehydratase family LNQ41_011645 PF00005 ABC transporter LNQ41_011650 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_011655 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_011660 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_011670 PF02441 Flavoprotein LNQ41_011675 PF00156 Phosphoribosyl transferase domain LNQ41_011680 PF02674 Colicin V production protein LNQ41_011685 PF05036 Sporulation related domain LNQ41_011690 PF08245 Mur ligase middle domain LNQ41_011690 PF02875 Mur ligase family, glutamate ligase domain LNQ41_011695 PF01039 Carboxyl transferase domain LNQ41_011695 PF17848 Acetyl-coA carboxylase zinc finger domain LNQ41_011700 PF09335 SNARE associated Golgi protein LNQ41_011705 PF01416 tRNA pseudouridine synthase LNQ41_011710 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ41_011710 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ41_011715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ41_011715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ41_011715 PF11890 Domain of unknown function (DUF3410) LNQ41_011735 PF00155 Aminotransferase class I and II LNQ41_011740 PF00578 AhpC/TSA family LNQ41_011770 PF02801 Beta-ketoacyl synthase, C-terminal domain LNQ41_011770 PF00109 Beta-ketoacyl synthase, N-terminal domain LNQ41_011775 PF01266 FAD dependent oxidoreductase LNQ41_011775 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LNQ41_011780 PF08891 YfcL protein LNQ41_011785 PF04315 Elongation factor P hydroxylase LNQ41_011790 PF01925 Sulfite exporter TauE/SafE LNQ41_011795 PF03411 Penicillin-insensitive murein endopeptidase LNQ41_011800 PF01264 Chorismate synthase LNQ41_011805 PF05175 Methyltransferase small domain LNQ41_011810 PF01713 Smr domain LNQ41_011815 PF00300 Histidine phosphatase superfamily (branch 1) LNQ41_011820 PF00378 Enoyl-CoA hydratase/isomerase LNQ41_011820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNQ41_011820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNQ41_011825 PF02803 Thiolase, C-terminal domain LNQ41_011825 PF00108 Thiolase, N-terminal domain LNQ41_011830 PF04175 Protein of unknown function (DUF406) LNQ41_011835 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LNQ41_011840 PF04333 MlaA lipoprotein LNQ41_011845 PF03918 Cytochrome C biogenesis protein LNQ41_011850 PF03918 Cytochrome C biogenesis protein LNQ41_011855 PF08534 Redoxin LNQ41_011860 PF01578 Cytochrome C assembly protein LNQ41_011860 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LNQ41_011865 PF03100 CcmE LNQ41_011870 PF04995 Heme exporter protein D (CcmD) LNQ41_011875 PF01578 Cytochrome C assembly protein LNQ41_011880 PF03379 CcmB protein LNQ41_011885 PF00005 ABC transporter LNQ41_011900 PF08274 PhnA Zinc-Ribbon LNQ41_011900 PF03831 PhnA domain LNQ41_011905 PF13406 Transglycosylase SLT domain LNQ41_011920 PF01292 Prokaryotic cytochrome b561 LNQ41_011925 PF00155 Aminotransferase class I and II LNQ41_011930 PF07350 Protein of unknown function (DUF1479) LNQ41_011935 PF07694 5TMR of 5TMR-LYT LNQ41_011935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_011935 PF06580 Histidine kinase LNQ41_011940 PF04397 LytTr DNA-binding domain LNQ41_011940 PF00072 Response regulator receiver domain LNQ41_011945 PF07690 Major Facilitator Superfamily LNQ41_011950 PF02685 Glucokinase LNQ41_011960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_011960 PF03466 LysR substrate binding domain LNQ41_011970 PF01566 Natural resistance-associated macrophage protein LNQ41_011975 PF07670 Nucleoside recognition LNQ41_011975 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ41_011975 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ41_012020 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNQ41_012045 PF12843 Putative quorum-sensing-regulated virulence factor LNQ41_012050 PF12826 Helix-hairpin-helix motif LNQ41_012050 PF00533 BRCA1 C Terminus (BRCT) domain LNQ41_012050 PF01653 NAD-dependent DNA ligase adenylation domain LNQ41_012050 PF03120 NAD-dependent DNA ligase OB-fold domain LNQ41_012050 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LNQ41_012055 PF04354 ZipA, C-terminal FtsZ-binding domain LNQ41_012065 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_012070 PF00381 PTS HPr component phosphorylation site LNQ41_012075 PF05524 PEP-utilising enzyme, N-terminal LNQ41_012075 PF00391 PEP-utilising enzyme, mobile domain LNQ41_012075 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ41_012080 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LNQ41_012085 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_012090 PF00005 ABC transporter LNQ41_012095 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_012100 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_012110 PF07690 Major Facilitator Superfamily LNQ41_012115 PF01418 Helix-turn-helix domain, rpiR family LNQ41_012115 PF01380 SIS domain LNQ41_012120 PF04074 YhcH/YjgK/YiaL LNQ41_012125 PF00480 ROK family LNQ41_012130 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LNQ41_012135 PF00701 Dihydrodipicolinate synthetase family LNQ41_012140 PF04261 Dyp-type peroxidase family LNQ41_012145 PF06572 Protein of unknown function (DUF1131) LNQ41_012150 PF04076 Bacterial OB fold (BOF) protein LNQ41_012200 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_012200 PF06480 FtsH Extracellular LNQ41_012200 PF01434 Peptidase family M41 LNQ41_012200 PF17862 AAA+ lid domain LNQ41_012205 PF00589 Phage integrase family LNQ41_012215 PF00583 Acetyltransferase (GNAT) family LNQ41_012220 PF01218 Coproporphyrinogen III oxidase LNQ41_012225 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LNQ41_012230 PF00390 Malic enzyme, N-terminal domain LNQ41_012230 PF01515 Phosphate acetyl/butaryl transferase LNQ41_012230 PF03949 Malic enzyme, NAD binding domain LNQ41_012235 PF00293 NUDIX domain LNQ41_012240 PF03264 NapC/NirT cytochrome c family, N-terminal region LNQ41_012245 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LNQ41_012250 PF10518 TAT (twin-arginine translocation) pathway signal sequence LNQ41_012250 PF01568 Molydopterin dinucleotide binding domain LNQ41_012250 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNQ41_012250 PF00384 Molybdopterin oxidoreductase LNQ41_012255 PF03927 NapD protein LNQ41_012260 PF12800 4Fe-4S binding domain LNQ41_012260 PF13187 4Fe-4S dicluster domain LNQ41_012260 PF00037 4Fe-4S binding domain LNQ41_012265 PF00196 Bacterial regulatory proteins, luxR family LNQ41_012265 PF00072 Response regulator receiver domain LNQ41_012275 PF00873 AcrB/AcrD/AcrF family LNQ41_012285 PF01817 Chorismate mutase type II LNQ41_012290 PF03960 ArsC family LNQ41_012295 PF07687 Peptidase dimerisation domain LNQ41_012295 PF01546 Peptidase family M20/M25/M40 LNQ41_012300 PF02557 D-alanyl-D-alanine carboxypeptidase LNQ41_012305 PF13980 Uncharacterised protein family (UPF0370) LNQ41_012310 PF02230 Phospholipase/Carboxylesterase LNQ41_012315 PF13718 GNAT acetyltransferase 2 LNQ41_012315 PF08351 Domain of unknown function (DUF1726) LNQ41_012315 PF17176 tRNA-binding domain LNQ41_012315 PF05127 Helicase LNQ41_012320 PF04284 Protein of unknown function (DUF441) LNQ41_012325 PF01259 SAICAR synthetase LNQ41_012330 PF06804 NlpB/DapX lipoprotein LNQ41_012335 PF00701 Dihydrodipicolinate synthetase family LNQ41_012340 PF01842 ACT domain LNQ41_012345 PF00578 AhpC/TSA family LNQ41_012350 PF01594 AI-2E family transporter LNQ41_012355 PF07720 Tetratricopeptide repeat LNQ41_012355 PF01435 Peptidase family M48 LNQ41_012360 PF03960 ArsC family LNQ41_012365 PF00308 Bacterial dnaA protein LNQ41_012370 PF00860 Permease family LNQ41_012380 PF00586 AIR synthase related protein, N-terminal domain LNQ41_012380 PF02769 AIR synthase related protein, C-terminal domain LNQ41_012385 PF00551 Formyl transferase LNQ41_012390 PF13302 Acetyltransferase (GNAT) domain LNQ41_012395 PF00005 ABC transporter LNQ41_012400 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_012405 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_012410 PF13090 Polyphosphate kinase C-terminal domain 2 LNQ41_012410 PF17941 Polyphosphate kinase C-terminal domain 1 LNQ41_012410 PF13089 Polyphosphate kinase N-terminal domain LNQ41_012410 PF02503 Polyphosphate kinase middle domain LNQ41_012415 PF02541 Ppx/GppA phosphatase family LNQ41_012425 PF03448 MgtE intracellular N domain LNQ41_012425 PF01769 Divalent cation transporter LNQ41_012425 PF00571 CBS domain LNQ41_012430 PF00012 Hsp70 protein LNQ41_012440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ41_012440 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ41_012445 PF13954 PapC N-terminal domain LNQ41_012445 PF00577 Outer membrane usher protein LNQ41_012445 PF13953 PapC C-terminal domain LNQ41_012465 PF13533 Biotin-lipoyl like LNQ41_012470 PF00873 AcrB/AcrD/AcrF family LNQ41_012475 PF00873 AcrB/AcrD/AcrF family LNQ41_012480 PF07690 Major Facilitator Superfamily LNQ41_012485 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_012485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_012485 PF00672 HAMP domain LNQ41_012490 PF00072 Response regulator receiver domain LNQ41_012490 PF00486 Transcriptional regulatory protein, C terminal LNQ41_012495 PF07411 Domain of unknown function (DUF1508) LNQ41_012500 PF01136 Peptidase family U32 LNQ41_012500 PF16325 Peptidase family U32 C-terminal domain LNQ41_012505 PF00781 Diacylglycerol kinase catalytic domain LNQ41_012520 PF08543 Phosphomethylpyrimidine kinase LNQ41_012530 PF00117 Glutamine amidotransferase class-I LNQ41_012530 PF00958 GMP synthase C terminal domain LNQ41_012530 PF02540 NAD synthase LNQ41_012535 PF00571 CBS domain LNQ41_012535 PF00478 IMP dehydrogenase / GMP reductase domain LNQ41_012540 PF02601 Exonuclease VII, large subunit LNQ41_012540 PF13742 OB-fold nucleic acid binding domain LNQ41_012545 PF07191 zinc-ribbons LNQ41_012550 PF01926 50S ribosome-binding GTPase LNQ41_012550 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LNQ41_012555 PF13360 PQQ-like domain LNQ41_012560 PF09976 Tetratricopeptide repeat-like domain LNQ41_012565 PF03129 Anticodon binding domain LNQ41_012565 PF13393 Histidyl-tRNA synthetase LNQ41_012570 PF04551 GcpE protein LNQ41_012575 PF13464 Domain of unknown function (DUF4115) LNQ41_012585 PF04055 Radical SAM superfamily LNQ41_012590 PF00334 Nucleoside diphosphate kinase LNQ41_012600 PF06832 Penicillin-Binding Protein C-terminus Family LNQ41_012600 PF00912 Transglycosylase LNQ41_012600 PF00905 Penicillin binding protein transpeptidase domain LNQ41_012605 PF00207 Alpha-2-macroglobulin family LNQ41_012605 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LNQ41_012605 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LNQ41_012605 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LNQ41_012605 PF17962 Bacterial macroglobulin domain 6 LNQ41_012605 PF07703 Alpha-2-macroglobulin bait region domain LNQ41_012605 PF01835 MG2 domain LNQ41_012605 PF07678 A-macroglobulin TED domain LNQ41_012605 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LNQ41_012610 PF07179 SseB protein N-terminal domain LNQ41_012610 PF14581 SseB protein C-terminal domain LNQ41_012615 PF00883 Cytosol aminopeptidase family, catalytic domain LNQ41_012615 PF12404 Peptidase LNQ41_012620 PF04384 Iron-sulphur cluster assembly LNQ41_012625 PF00111 2Fe-2S iron-sulfur cluster binding domain LNQ41_012630 PF00012 Hsp70 protein LNQ41_012635 PF00226 DnaJ domain LNQ41_012635 PF07743 HSCB C-terminal oligomerisation domain LNQ41_012640 PF01521 Iron-sulphur cluster biosynthesis LNQ41_012645 PF01592 NifU-like N terminal domain LNQ41_012650 PF00266 Aminotransferase class-V LNQ41_012655 PF02082 Transcriptional regulator LNQ41_012660 PF00588 SpoU rRNA Methylase family LNQ41_012665 PF00459 Inositol monophosphatase family LNQ41_012670 PF03824 High-affinity nickel-transport protein LNQ41_012675 PF06226 Protein of unknown function (DUF1007) LNQ41_012680 PF00874 PRD domain LNQ41_012685 PF12832 MFS_1 like family LNQ41_012690 PF00464 Serine hydroxymethyltransferase LNQ41_012695 PF00175 Oxidoreductase NAD-binding domain LNQ41_012695 PF00042 Globin LNQ41_012695 PF00970 Oxidoreductase FAD-binding domain LNQ41_012700 PF14503 YhfZ C-terminal domain LNQ41_012700 PF14502 Helix-turn-helix domain LNQ41_012710 PF01168 Alanine racemase, N-terminal domain LNQ41_012715 PF02126 Phosphotriesterase family LNQ41_012720 PF10941 Protein of unknown function DUF2620 LNQ41_012725 PF10797 Protein of unknown function LNQ41_012730 PF00543 Nitrogen regulatory protein P-II LNQ41_012735 PF00795 Carbon-nitrogen hydrolase LNQ41_012735 PF02540 NAD synthase LNQ41_012740 PF00072 Response regulator receiver domain LNQ41_012740 PF00158 Sigma-54 interaction domain LNQ41_012745 PF13942 YfhG lipoprotein LNQ41_012750 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_012750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_012760 PF02769 AIR synthase related protein, C-terminal domain LNQ41_012760 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LNQ41_012760 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LNQ41_012765 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_012765 PF01464 Transglycosylase SLT domain LNQ41_012770 PF14437 MafB19-like deaminase LNQ41_012780 PF00367 phosphotransferase system, EIIB LNQ41_012780 PF02378 Phosphotransferase system, EIIC LNQ41_012785 PF01380 SIS domain LNQ41_012790 PF01418 Helix-turn-helix domain, rpiR family LNQ41_012790 PF01380 SIS domain LNQ41_012795 PF12838 4Fe-4S dicluster domain LNQ41_012800 PF01648 4'-phosphopantetheinyl transferase superfamily LNQ41_012805 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LNQ41_012810 PF11967 Recombination protein O N terminal LNQ41_012810 PF02565 Recombination protein O C terminal LNQ41_012815 PF01926 50S ribosome-binding GTPase LNQ41_012815 PF07650 KH domain LNQ41_012820 PF14622 Ribonuclease-III-like LNQ41_012820 PF00035 Double-stranded RNA binding motif LNQ41_012825 PF10502 Signal peptidase, peptidase S26 LNQ41_012830 PF00009 Elongation factor Tu GTP binding domain LNQ41_012830 PF06421 GTP-binding protein LepA C-terminus LNQ41_012830 PF03144 Elongation factor Tu domain 2 LNQ41_012830 PF00679 Elongation factor G C-terminus LNQ41_012840 PF03888 MucB/RseB N-terminal domain LNQ41_012840 PF17188 MucB/RseB C-terminal domain LNQ41_012845 PF03873 Anti sigma-E protein RseA, C-terminal domain LNQ41_012845 PF03872 Anti sigma-E protein RseA, N-terminal domain LNQ41_012850 PF04542 Sigma-70 region 2 LNQ41_012850 PF08281 Sigma-70, region 4 LNQ41_012855 PF00890 FAD binding domain LNQ41_012855 PF02910 Fumarate reductase flavoprotein C-term LNQ41_012860 PF05175 Methyltransferase small domain LNQ41_012865 PF00271 Helicase conserved C-terminal domain LNQ41_012865 PF00270 DEAD/DEAH box helicase LNQ41_012870 PF12796 Ankyrin repeats (3 copies) LNQ41_012880 PF01228 Glycine radical LNQ41_012885 PF03167 Uracil DNA glycosylase superfamily LNQ41_012890 PF01025 GrpE LNQ41_012895 PF01513 ATP-NAD kinase LNQ41_012900 PF02463 RecF/RecN/SMC N terminal domain LNQ41_012905 PF04355 SmpA / OmlA family LNQ41_012910 PF03658 RnfH family Ubiquitin LNQ41_012915 PF03364 Polyketide cyclase / dehydrase and lipid transport LNQ41_012920 PF01668 SmpB protein LNQ41_012935 PF01380 SIS domain LNQ41_012935 PF00571 CBS domain LNQ41_012940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNQ41_012940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNQ41_012950 PF02653 Branched-chain amino acid transport system / permease component LNQ41_012955 PF00005 ABC transporter LNQ41_012965 PF00561 alpha/beta hydrolase fold LNQ41_012970 PF03466 LysR substrate binding domain LNQ41_012970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_012975 PF02652 L-lactate permease LNQ41_012980 PF01070 FMN-dependent dehydrogenase LNQ41_012985 PF06039 Malate:quinone oxidoreductase (Mqo) LNQ41_012990 PF00313 'Cold-shock' DNA-binding domain LNQ41_013000 PF06711 Protein of unknown function (DUF1198) LNQ41_013005 PF09400 Protein of unknown function (DUF2002) LNQ41_013020 PF07972 NrdI Flavodoxin like LNQ41_013025 PF08343 Ribonucleotide reductase N-terminal LNQ41_013025 PF00317 Ribonucleotide reductase, all-alpha domain LNQ41_013025 PF02867 Ribonucleotide reductase, barrel domain LNQ41_013030 PF00268 Ribonucleotide reductase, small chain LNQ41_013035 PF00571 CBS domain LNQ41_013035 PF00005 ABC transporter LNQ41_013040 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_013045 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LNQ41_013055 PF07690 Major Facilitator Superfamily LNQ41_013060 PF01047 MarR family LNQ41_013070 PF00529 HlyD membrane-fusion protein of T1SS LNQ41_013070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNQ41_013075 PF07690 Major Facilitator Superfamily LNQ41_013080 PF00588 SpoU rRNA Methylase family LNQ41_013080 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNQ41_013085 PF00085 Thioredoxin LNQ41_013090 PF03942 DTW domain LNQ41_013095 PF00583 Acetyltransferase (GNAT) family LNQ41_013095 PF13380 CoA binding domain LNQ41_013095 PF13607 Succinyl-CoA ligase like flavodoxin domain LNQ41_013100 PF13091 PLD-like domain LNQ41_013105 PF10043 Predicted periplasmic lipoprotein (DUF2279) LNQ41_013135 PF00005 ABC transporter LNQ41_013135 PF09383 NIL domain LNQ41_013140 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_013145 PF03180 NLPA lipoprotein LNQ41_013150 PF16358 RcsF lipoprotein LNQ41_013155 PF01980 tRNA-methyltransferase O LNQ41_013155 PF18389 TrmO C-terminal domain LNQ41_013160 PF03129 Anticodon binding domain LNQ41_013160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNQ41_013160 PF04073 Aminoacyl-tRNA editing domain LNQ41_013165 PF04170 NlpE N-terminal domain LNQ41_013165 PF17185 NlpE C-terminal OB domain LNQ41_013170 PF00472 RF-1 domain LNQ41_013175 PF07152 YaeQ protein LNQ41_013180 PF06786 Uncharacterised protein family (UPF0253) LNQ41_013185 PF07073 Modulator of Rho-dependent transcription termination (ROF) LNQ41_013190 PF00034 Cytochrome c LNQ41_013195 PF01171 PP-loop family LNQ41_013195 PF11734 TilS substrate C-terminal domain LNQ41_013195 PF09179 TilS substrate binding domain LNQ41_013200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNQ41_013215 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LNQ41_013220 PF01336 OB-fold nucleic acid binding domain LNQ41_013220 PF02811 PHP domain LNQ41_013220 PF14579 Helix-hairpin-helix motif LNQ41_013220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LNQ41_013220 PF07733 Bacterial DNA polymerase III alpha NTPase domain LNQ41_013225 PF01351 Ribonuclease HII LNQ41_013230 PF02684 Lipid-A-disaccharide synthetase LNQ41_013235 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LNQ41_013235 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ41_013240 PF07977 FabA-like domain LNQ41_013245 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ41_013245 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LNQ41_013250 PF03938 Outer membrane protein (OmpH-like) LNQ41_013255 PF01103 Surface antigen LNQ41_013255 PF07244 Surface antigen variable number repeat LNQ41_013260 PF17820 PDZ domain LNQ41_013260 PF02163 Peptidase family M50 LNQ41_013270 PF01255 Putative undecaprenyl diphosphate synthase LNQ41_013275 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LNQ41_013275 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LNQ41_013275 PF13288 DXP reductoisomerase C-terminal domain LNQ41_013280 PF01765 Ribosome recycling factor LNQ41_013285 PF00696 Amino acid kinase family LNQ41_013290 PF00889 Elongation factor TS LNQ41_013295 PF00318 Ribosomal protein S2 LNQ41_013305 PF00557 Metallopeptidase family M24 LNQ41_013310 PF01842 ACT domain LNQ41_013310 PF08335 GlnD PII-uridylyltransferase LNQ41_013310 PF01966 HD domain LNQ41_013310 PF01909 Nucleotidyltransferase domain LNQ41_013315 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ41_013315 PF14602 Hexapeptide repeat of succinyl-transferase LNQ41_013315 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LNQ41_013320 PF11944 Protein of unknown function (DUF3461) LNQ41_013325 PF00258 Flavodoxin LNQ41_013330 PF00849 RNA pseudouridylate synthase LNQ41_013335 PF04287 tRNA pseudouridine synthase C LNQ41_013340 PF07348 Syd protein (SUKH-2) LNQ41_013345 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LNQ41_013345 PF14489 QueF-like protein LNQ41_013350 PF03641 Possible lysine decarboxylase LNQ41_013350 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LNQ41_013350 PF11892 Domain of unknown function (DUF3412) LNQ41_013355 PF01367 5'-3' exonuclease, C-terminal SAM fold LNQ41_013355 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNQ41_013360 PF18125 RlmM ferredoxin-like domain LNQ41_013360 PF01728 FtsJ-like methyltransferase LNQ41_013365 PF04241 Protein of unknown function (DUF423) LNQ41_013370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_013370 PF03466 LysR substrate binding domain LNQ41_013375 PF06004 Bacterial protein of unknown function (DUF903) LNQ41_013380 PF00266 Aminotransferase class-V LNQ41_013385 PF02657 Fe-S metabolism associated domain LNQ41_013390 PF00899 ThiF family LNQ41_013395 PF03562 MltA specific insert domain LNQ41_013395 PF06725 3D domain LNQ41_013415 PF11741 AMIN domain LNQ41_013415 PF01520 N-acetylmuramoyl-L-alanine amidase LNQ41_013420 PF00583 Acetyltransferase (GNAT) family LNQ41_013420 PF00696 Amino acid kinase family LNQ41_013425 PF13538 UvrD-like helicase C-terminal domain LNQ41_013430 PF13361 UvrD-like helicase C-terminal domain LNQ41_013430 PF00580 UvrD/REP helicase N-terminal domain LNQ41_013430 PF12705 PD-(D/E)XK nuclease superfamily LNQ41_013435 PF05193 Peptidase M16 inactive domain LNQ41_013435 PF00675 Insulinase (Peptidase family M16) LNQ41_013435 PF16187 Middle or third domain of peptidase_M16 LNQ41_013440 PF17946 RecC C-terminal domain LNQ41_013445 PF07963 Prokaryotic N-terminal methylation motif LNQ41_013445 PF12528 Type II secretion prepilin peptidase dependent protein C LNQ41_013460 PF07963 Prokaryotic N-terminal methylation motif LNQ41_013460 PF00114 Pilin (bacterial filament) LNQ41_013465 PF00303 Thymidylate synthase LNQ41_013470 PF01790 Prolipoprotein diacylglyceryl transferase LNQ41_013475 PF01590 GAF domain LNQ41_013475 PF05524 PEP-utilising enzyme, N-terminal LNQ41_013475 PF00391 PEP-utilising enzyme, mobile domain LNQ41_013475 PF02896 PEP-utilising enzyme, TIM barrel domain LNQ41_013480 PF00293 NUDIX domain LNQ41_013485 PF02976 DNA mismatch repair enzyme MutH LNQ41_013490 PF03741 Integral membrane protein TerC family LNQ41_013495 PF00248 Aldo/keto reductase family LNQ41_013500 PF07690 Major Facilitator Superfamily LNQ41_013505 PF01553 Acyltransferase LNQ41_013505 PF13193 AMP-binding enzyme C-terminal domain LNQ41_013505 PF00501 AMP-binding enzyme LNQ41_013510 PF00356 Bacterial regulatory proteins, lacI family LNQ41_013515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LNQ41_013515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNQ41_013520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_013520 PF03466 LysR substrate binding domain LNQ41_013525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_013525 PF03466 LysR substrate binding domain LNQ41_013565 PF07963 Prokaryotic N-terminal methylation motif LNQ41_013565 PF11612 Type II secretion system (T2SS), protein J LNQ41_013570 PF07963 Prokaryotic N-terminal methylation motif LNQ41_013570 PF02501 Type II secretion system (T2SS), protein I LNQ41_013580 PF07963 Prokaryotic N-terminal methylation motif LNQ41_013580 PF08334 Type II secretion system (T2SS), protein G LNQ41_013585 PF00482 Type II secretion system (T2SS), protein F LNQ41_013590 PF00437 Type II/IV secretion system protein LNQ41_013595 PF00263 Bacterial type II and III secretion system protein LNQ41_013595 PF03958 Bacterial type II/III secretion system short domain LNQ41_013620 PF00005 ABC transporter LNQ41_013625 PF02405 Permease MlaE LNQ41_013685 PF00589 Phage integrase family LNQ41_013695 PF00152 tRNA synthetases class II (D, K and N) LNQ41_013695 PF01336 OB-fold nucleic acid binding domain LNQ41_013705 PF01368 DHH family LNQ41_013705 PF02272 DHHA1 domain LNQ41_013705 PF17768 RecJ OB domain LNQ41_013710 PF10411 Disulfide bond isomerase protein N-terminus LNQ41_013710 PF13098 Thioredoxin-like domain LNQ41_013715 PF02899 Phage integrase, N-terminal SAM-like domain LNQ41_013715 PF00589 Phage integrase family LNQ41_013720 PF00258 Flavodoxin LNQ41_013725 PF07254 Membrane-bound toxin component of toxin-antitoxin system LNQ41_013730 PF03937 Flavinator of succinate dehydrogenase LNQ41_013735 PF01571 Aminomethyltransferase folate-binding domain LNQ41_013740 PF03006 Haemolysin-III related LNQ41_013750 PF02347 Glycine cleavage system P-protein LNQ41_013755 PF01597 Glycine cleavage H-protein LNQ41_013760 PF01571 Aminomethyltransferase folate-binding domain LNQ41_013760 PF08669 Glycine cleavage T-protein C-terminal barrel domain LNQ41_013765 PF01494 FAD binding domain LNQ41_013770 PF01494 FAD binding domain LNQ41_013775 PF05195 Aminopeptidase P, N-terminal domain LNQ41_013775 PF00557 Metallopeptidase family M24 LNQ41_013780 PF03695 Uncharacterised protein family (UPF0149) LNQ41_013785 PF05164 Cell division protein ZapA LNQ41_013795 PF01812 5-formyltetrahydrofolate cyclo-ligase family LNQ41_013800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNQ41_013800 PF01842 ACT domain LNQ41_013800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNQ41_013805 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LNQ41_013810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_013810 PF03466 LysR substrate binding domain LNQ41_013815 PF04402 Protein of unknown function (DUF541) LNQ41_013820 PF01810 LysE type translocator LNQ41_013825 PF00924 Mechanosensitive ion channel LNQ41_013825 PF05552 Conserved TM helix LNQ41_013830 PF01116 Fructose-bisphosphate aldolase class-II LNQ41_013835 PF00162 Phosphoglycerate kinase LNQ41_013840 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LNQ41_013840 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LNQ41_013845 PF02780 Transketolase, C-terminal domain LNQ41_013845 PF00456 Transketolase, thiamine diphosphate binding domain LNQ41_013845 PF02779 Transketolase, pyrimidine binding domain LNQ41_013855 PF17810 Arginine decarboxylase helical bundle domain LNQ41_013855 PF17944 Arginine decarboxylase C-terminal helical extension LNQ41_013855 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNQ41_013860 PF02773 S-adenosylmethionine synthetase, C-terminal domain LNQ41_013860 PF02772 S-adenosylmethionine synthetase, central domain LNQ41_013860 PF00438 S-adenosylmethionine synthetase, N-terminal domain LNQ41_013870 PF04143 Sulphur transport LNQ41_013880 PF10263 SprT-like family LNQ41_013880 PF17283 SprT-like zinc ribbon domain LNQ41_013885 PF04231 Endonuclease I LNQ41_013890 PF04452 RNA methyltransferase LNQ41_013895 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LNQ41_013895 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LNQ41_013900 PF02622 Uncharacterized ACR, COG1678 LNQ41_013905 PF03652 Holliday junction resolvase LNQ41_013910 PF00795 Carbon-nitrogen hydrolase LNQ41_013915 PF04371 Porphyromonas-type peptidyl-arginine deiminase LNQ41_013920 PF00437 Type II/IV secretion system protein LNQ41_013925 PF01168 Alanine racemase, N-terminal domain LNQ41_013930 PF14748 Pyrroline-5-carboxylate reductase dimerisation LNQ41_013930 PF03807 NADP oxidoreductase coenzyme F420-dependent LNQ41_013935 PF02325 YGGT family LNQ41_013940 PF02594 Uncharacterised ACR, YggU family COG1872 LNQ41_013945 PF01725 Ham1 family LNQ41_013950 PF06969 HemN C-terminal domain LNQ41_013950 PF04055 Radical SAM superfamily LNQ41_013955 PF11101 Protein of unknown function (DUF2884) LNQ41_013960 PF04960 Glutaminase LNQ41_013965 PF04320 Protein with unknown function (DUF469) LNQ41_013970 PF02390 Putative methyltransferase LNQ41_013975 PF10576 Iron-sulfur binding domain of endonuclease III LNQ41_013975 PF00633 Helix-hairpin-helix motif LNQ41_013975 PF00730 HhH-GPD superfamily base excision DNA repair protein LNQ41_013975 PF14815 NUDIX domain LNQ41_013980 PF04362 Bacterial Fe(2+) trafficking LNQ41_013985 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LNQ41_013985 PF01464 Transglycosylase SLT domain LNQ41_014020 PF00294 pfkB family carbohydrate kinase LNQ41_014030 PF01228 Glycine radical LNQ41_014030 PF02901 Pyruvate formate lyase-like LNQ41_014035 PF00871 Acetokinase family LNQ41_014040 PF01490 Transmembrane amino acid transporter protein LNQ41_014045 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_014050 PF00501 AMP-binding enzyme LNQ41_014050 PF13193 AMP-binding enzyme C-terminal domain LNQ41_014050 PF00668 Condensation domain LNQ41_014050 PF00550 Phosphopantetheine attachment site LNQ41_014050 PF00975 Thioesterase domain LNQ41_014060 PF00550 Phosphopantetheine attachment site LNQ41_014060 PF00857 Isochorismatase family LNQ41_014065 PF13193 AMP-binding enzyme C-terminal domain LNQ41_014065 PF00501 AMP-binding enzyme LNQ41_014070 PF00425 chorismate binding enzyme LNQ41_014075 PF01497 Periplasmic binding protein LNQ41_014080 PF05977 Transmembrane secretion effector LNQ41_014085 PF01032 FecCD transport family LNQ41_014090 PF01032 FecCD transport family LNQ41_014095 PF00005 ABC transporter LNQ41_014105 PF00668 Condensation domain LNQ41_014105 PF13193 AMP-binding enzyme C-terminal domain LNQ41_014105 PF00501 AMP-binding enzyme LNQ41_014105 PF00550 Phosphopantetheine attachment site LNQ41_014105 PF00975 Thioesterase domain LNQ41_014110 PF03621 MbtH-like protein LNQ41_014115 PF00756 Putative esterase LNQ41_014115 PF11806 Domain of unknown function (DUF3327) LNQ41_014120 PF00593 TonB dependent receptor LNQ41_014120 PF07715 TonB-dependent Receptor Plug Domain LNQ41_014125 PF08501 Shikimate dehydrogenase substrate binding domain LNQ41_014150 PF13629 Pilus formation protein N terminal region LNQ41_014150 PF00263 Bacterial type II and III secretion system protein LNQ41_014150 PF04972 BON domain LNQ41_014165 PF00437 Type II/IV secretion system protein LNQ41_014200 PF02472 Biopolymer transport protein ExbD/TolR LNQ41_014205 PF01618 MotA/TolQ/ExbB proton channel family LNQ41_014210 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ41_014215 PF09335 SNARE associated Golgi protein LNQ41_014220 PF12833 Helix-turn-helix domain LNQ41_014220 PF06719 AraC-type transcriptional regulator N-terminus LNQ41_014225 PF00465 Iron-containing alcohol dehydrogenase LNQ41_014230 PF00248 Aldo/keto reductase family LNQ41_014235 PF11842 Domain of unknown function (DUF3362) LNQ41_014235 PF04055 Radical SAM superfamily LNQ41_014235 PF08497 Radical SAM N-terminal LNQ41_014240 PF07731 Multicopper oxidase LNQ41_014240 PF07732 Multicopper oxidase LNQ41_014245 PF01553 Acyltransferase LNQ41_014250 PF03989 DNA gyrase C-terminal domain, beta-propeller LNQ41_014250 PF00521 DNA gyrase/topoisomerase IV, subunit A LNQ41_014255 PF02525 Flavodoxin-like fold LNQ41_014260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_014260 PF03466 LysR substrate binding domain LNQ41_014265 PF00204 DNA gyrase B LNQ41_014265 PF00986 DNA gyrase B subunit, carboxyl terminus LNQ41_014265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_014265 PF01751 Toprim domain LNQ41_014270 PF05728 Uncharacterised protein family (UPF0227) LNQ41_014275 PF00149 Calcineurin-like phosphoesterase LNQ41_014280 PF06853 Protein of unknown function (DUF1249) LNQ41_014285 PF00293 NUDIX domain LNQ41_014290 PF02321 Outer membrane efflux protein LNQ41_014295 PF06693 Protein of unknown function (DUF1190) LNQ41_014300 PF03738 Glutathionylspermidine synthase preATP-grasp LNQ41_014305 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LNQ41_014310 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LNQ41_014315 PF04380 Membrane fusogenic activity LNQ41_014320 PF01467 Cytidylyltransferase-like LNQ41_014320 PF00294 pfkB family carbohydrate kinase LNQ41_014325 PF08335 GlnD PII-uridylyltransferase LNQ41_014325 PF03710 Glutamate-ammonia ligase adenylyltransferase LNQ41_014330 PF01928 CYTH domain LNQ41_014335 PF08239 Bacterial SH3 domain LNQ41_014340 PF01743 Poly A polymerase head domain LNQ41_014340 PF12627 Probable RNA and SrmB- binding site of polymerase A LNQ41_014340 PF01966 HD domain LNQ41_014345 PF02673 Bacitracin resistance protein BacA LNQ41_014350 PF02152 Dihydroneopterin aldolase LNQ41_014355 PF02660 Glycerol-3-phosphate acyltransferase LNQ41_014360 PF00814 Glycoprotease family LNQ41_014365 PF01165 Ribosomal protein S21 LNQ41_014370 PF10410 DnaB-helicase binding domain of primase LNQ41_014370 PF08278 DNA primase DnaG DnaB-binding LNQ41_014370 PF08275 DNA primase catalytic core, N-terminal domain LNQ41_014370 PF01807 CHC2 zinc finger LNQ41_014375 PF04545 Sigma-70, region 4 LNQ41_014375 PF04539 Sigma-70 region 3 LNQ41_014375 PF03979 Sigma-70 factor, region 1.1 LNQ41_014375 PF00140 Sigma-70 factor, region 1.2 LNQ41_014375 PF04542 Sigma-70 region 2 LNQ41_014375 PF04546 Sigma-70, non-essential region LNQ41_014400 PF00106 short chain dehydrogenase LNQ41_014425 PF08241 Methyltransferase domain LNQ41_014430 PF00535 Glycosyl transferase family 2 LNQ41_014485 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LNQ41_014490 PF00589 Phage integrase family LNQ41_014490 PF13495 Phage integrase, N-terminal SAM-like domain LNQ41_014495 PF10410 DnaB-helicase binding domain of primase LNQ41_014495 PF08275 DNA primase catalytic core, N-terminal domain LNQ41_014495 PF01807 CHC2 zinc finger LNQ41_014500 PF01381 Helix-turn-helix LNQ41_014530 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LNQ41_014535 PF13495 Phage integrase, N-terminal SAM-like domain LNQ41_014535 PF00589 Phage integrase family LNQ41_014540 PF08275 DNA primase catalytic core, N-terminal domain LNQ41_014540 PF10410 DnaB-helicase binding domain of primase LNQ41_014540 PF01807 CHC2 zinc finger LNQ41_014545 PF01381 Helix-turn-helix LNQ41_014575 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LNQ41_014580 PF13495 Phage integrase, N-terminal SAM-like domain LNQ41_014580 PF00589 Phage integrase family LNQ41_014585 PF08275 DNA primase catalytic core, N-terminal domain LNQ41_014585 PF01807 CHC2 zinc finger LNQ41_014585 PF10410 DnaB-helicase binding domain of primase LNQ41_014590 PF01381 Helix-turn-helix LNQ41_014610 PF05860 haemagglutination activity domain LNQ41_014610 PF04829 Pre-toxin domain with VENN motif LNQ41_014610 PF13018 Extended Signal Peptide of Type V secretion system LNQ41_014610 PF13332 Hemagglutinin repeat LNQ41_014615 PF08479 POTRA domain, ShlB-type LNQ41_014615 PF17287 POTRA domain LNQ41_014615 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ41_014620 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_014620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNQ41_014625 PF05175 Methyltransferase small domain LNQ41_014635 PF01863 Protein of unknown function DUF45 LNQ41_014640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNQ41_014645 PF03741 Integral membrane protein TerC family LNQ41_014650 PF00375 Sodium:dicarboxylate symporter family LNQ41_014655 PF10688 Bacterial inner membrane protein LNQ41_014660 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LNQ41_014660 PF08666 SAF domain LNQ41_014665 PF01232 Mannitol dehydrogenase Rossmann domain LNQ41_014665 PF08125 Mannitol dehydrogenase C-terminal domain LNQ41_014670 PF02614 Glucuronate isomerase LNQ41_014675 PF07690 Major Facilitator Superfamily LNQ41_014680 PF07729 FCD domain LNQ41_014680 PF00392 Bacterial regulatory proteins, gntR family LNQ41_014690 PF09335 SNARE associated Golgi protein LNQ41_014695 PF13721 SecD export protein N-terminal TM region LNQ41_014705 PF05957 Bacterial protein of unknown function (DUF883) LNQ41_014710 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LNQ41_014715 PF13997 YqjK-like protein LNQ41_014720 PF07681 DoxX LNQ41_014725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_014725 PF03466 LysR substrate binding domain LNQ41_014730 PF02678 Pirin LNQ41_014730 PF17954 Quercetinase C-terminal cupin domain LNQ41_014745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNQ41_014750 PF04348 LppC putative lipoprotein LNQ41_014755 PF02021 Uncharacterised protein family UPF0102 LNQ41_014760 PF13580 SIS domain LNQ41_014765 PF04972 BON domain LNQ41_014770 PF00912 Transglycosylase LNQ41_014780 PF00072 Response regulator receiver domain LNQ41_014780 PF00989 PAS fold LNQ41_014780 PF01627 Hpt domain LNQ41_014780 PF18415 Histidine kinase receptor ArcB trans-membrane domain LNQ41_014780 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_014780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_014790 PF16199 Radical_SAM C-terminal domain LNQ41_014790 PF04055 Radical SAM superfamily LNQ41_014795 PF01493 GXGXG motif LNQ41_014795 PF01645 Conserved region in glutamate synthase LNQ41_014795 PF04898 Glutamate synthase central domain LNQ41_014795 PF00310 Glutamine amidotransferases class-II LNQ41_014800 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_014800 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNQ41_014810 PF04386 Stringent starvation protein B LNQ41_014815 PF02798 Glutathione S-transferase, N-terminal domain LNQ41_014815 PF00043 Glutathione S-transferase, C-terminal domain LNQ41_014820 PF00380 Ribosomal protein S9/S16 LNQ41_014825 PF00572 Ribosomal protein L13 LNQ41_014830 PF03969 AFG1-like ATPase LNQ41_014835 PF06295 Protein of unknown function (DUF1043) LNQ41_014840 PF13180 PDZ domain LNQ41_014840 PF00595 PDZ domain LNQ41_014845 PF13180 PDZ domain LNQ41_014850 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNQ41_014855 PF01722 BolA-like protein LNQ41_014860 PF13466 STAS domain LNQ41_014865 PF05494 MlaC protein LNQ41_014870 PF02470 MlaD protein LNQ41_014875 PF02405 Permease MlaE LNQ41_014880 PF00005 ABC transporter LNQ41_014885 PF01699 Sodium/calcium exchanger protein LNQ41_014890 PF01380 SIS domain LNQ41_014890 PF00571 CBS domain LNQ41_014900 PF06835 Lipopolysaccharide-assembly, LptC-related LNQ41_014905 PF03968 OstA-like protein LNQ41_014910 PF12399 Branched-chain amino acid ATP-binding cassette transporter LNQ41_014910 PF00005 ABC transporter LNQ41_014915 PF00309 Sigma-54 factor, Activator interacting domain (AID) LNQ41_014915 PF04963 Sigma-54 factor, core binding domain LNQ41_014915 PF04552 Sigma-54, DNA binding domain LNQ41_014920 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LNQ41_014925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNQ41_014930 PF03668 P-loop ATPase protein family LNQ41_014935 PF00381 PTS HPr component phosphorylation site LNQ41_014940 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNQ41_014940 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNQ41_014945 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LNQ41_014945 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LNQ41_014950 PF01042 Endoribonuclease L-PSP LNQ41_014955 PF00128 Alpha amylase, catalytic domain LNQ41_014955 PF11941 Domain of unknown function (DUF3459) LNQ41_014960 PF00367 phosphotransferase system, EIIB LNQ41_014960 PF02378 Phosphotransferase system, EIIC LNQ41_014965 PF00356 Bacterial regulatory proteins, lacI family LNQ41_014970 PF00689 Cation transporting ATPase, C-terminus LNQ41_014970 PF00690 Cation transporter/ATPase, N-terminus LNQ41_014980 PF01272 Transcription elongation factor, GreA/GreB, C-term LNQ41_014980 PF14760 Rnk N-terminus LNQ41_014985 PF07361 Cytochrome b562 LNQ41_014990 PF01523 Putative modulator of DNA gyrase LNQ41_014995 PF04751 Protein of unknown function (DUF615) LNQ41_015000 PF01337 Barstar (barnase inhibitor) LNQ41_015005 PF00545 ribonuclease LNQ41_015010 PF00171 Aldehyde dehydrogenase family LNQ41_015015 PF04632 Fusaric acid resistance protein family LNQ41_015020 PF13533 Biotin-lipoyl like LNQ41_015025 PF07869 Protein of unknown function (DUF1656) LNQ41_015030 PF03466 LysR substrate binding domain LNQ41_015030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_015035 PF01523 Putative modulator of DNA gyrase LNQ41_015040 PF00795 Carbon-nitrogen hydrolase LNQ41_015045 PF13116 Protein of unknown function LNQ41_015045 PF13502 AsmA-like C-terminal region LNQ41_015050 PF10150 Ribonuclease E/G family LNQ41_015050 PF00575 S1 RNA binding domain LNQ41_015055 PF02545 Maf-like protein LNQ41_015060 PF04093 rod shape-determining protein MreD LNQ41_015065 PF04085 rod shape-determining protein MreC LNQ41_015075 PF17157 Gammaproteobacterial periplasmic sensor domain LNQ41_015075 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_015075 PF00563 EAL domain LNQ41_015080 PF00107 Zinc-binding dehydrogenase LNQ41_015080 PF08240 Alcohol dehydrogenase GroES-like domain LNQ41_015085 PF00174 Oxidoreductase molybdopterin binding domain LNQ41_015090 PF01794 Ferric reductase like transmembrane component LNQ41_015095 PF01220 Dehydroquinase class II LNQ41_015100 PF00364 Biotin-requiring enzyme LNQ41_015105 PF00289 Biotin carboxylase, N-terminal domain LNQ41_015105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNQ41_015105 PF02785 Biotin carboxylase C-terminal domain LNQ41_015110 PF06196 Protein of unknown function (DUF997) LNQ41_015115 PF00474 Sodium:solute symporter family LNQ41_015125 PF01207 Dihydrouridine synthase (Dus) LNQ41_015130 PF02954 Bacterial regulatory protein, Fis family LNQ41_015140 PF03279 Bacterial lipid A biosynthesis acyltransferase LNQ41_015145 PF00484 Carbonic anhydrase LNQ41_015150 PF04172 LrgB-like family LNQ41_015155 PF03788 LrgA family LNQ41_015160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_015160 PF03466 LysR substrate binding domain LNQ41_015165 PF00999 Sodium/hydrogen exchanger family LNQ41_015170 PF00860 Permease family LNQ41_015180 PF00436 Single-strand binding protein family LNQ41_015185 PF17755 UvrA DNA-binding domain LNQ41_015185 PF00005 ABC transporter LNQ41_015185 PF17760 UvrA interaction domain LNQ41_015190 PF04237 YjbR LNQ41_015195 PF00155 Aminotransferase class I and II LNQ41_015200 PF00842 Alanine racemase, C-terminal domain LNQ41_015200 PF01168 Alanine racemase, N-terminal domain LNQ41_015205 PF03796 DnaB-like helicase C terminal domain LNQ41_015205 PF00772 DnaB-like helicase N terminal domain LNQ41_015210 PF00107 Zinc-binding dehydrogenase LNQ41_015210 PF08240 Alcohol dehydrogenase GroES-like domain LNQ41_015215 PF09583 Phage shock protein G (Phageshock_PspG) LNQ41_015220 PF01207 Dihydrouridine synthase (Dus) LNQ41_015225 PF01475 Ferric uptake regulator family LNQ41_015230 PF01726 LexA DNA binding domain LNQ41_015230 PF00717 Peptidase S24-like LNQ41_015235 PF01219 Prokaryotic diacylglycerol kinase LNQ41_015240 PF01553 Acyltransferase LNQ41_015245 PF01040 UbiA prenyltransferase family LNQ41_015250 PF04345 Chorismate lyase LNQ41_015255 PF07148 Maltose operon periplasmic protein precursor (MalM) LNQ41_015260 PF02264 LamB porin LNQ41_015265 PF00005 ABC transporter LNQ41_015265 PF17912 MalK OB fold domain LNQ41_015275 PF01547 Bacterial extracellular solute-binding protein LNQ41_015280 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_015280 PF14785 Maltose transport system permease protein MalF P2 domain LNQ41_015285 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_015290 PF06146 Phosphate-starvation-inducible E LNQ41_015295 PF00342 Phosphoglucose isomerase LNQ41_015300 PF00696 Amino acid kinase family LNQ41_015300 PF01842 ACT domain LNQ41_015305 PF08479 POTRA domain, ShlB-type LNQ41_015305 PF17287 POTRA domain LNQ41_015305 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LNQ41_015310 PF13332 Hemagglutinin repeat LNQ41_015310 PF05860 haemagglutination activity domain LNQ41_015315 PF04488 Glycosyltransferase sugar-binding region containing DXD motif LNQ41_015325 PF01434 Peptidase family M41 LNQ41_015325 PF17862 AAA+ lid domain LNQ41_015325 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_015405 PF03466 LysR substrate binding domain LNQ41_015405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_015420 PF02965 Vitamin B12 dependent methionine synthase, activation domain LNQ41_015420 PF02310 B12 binding domain LNQ41_015420 PF00809 Pterin binding enzyme LNQ41_015420 PF02574 Homocysteine S-methyltransferase LNQ41_015420 PF02607 B12 binding domain LNQ41_015425 PF09339 IclR helix-turn-helix domain LNQ41_015425 PF01614 Bacterial transcriptional regulator LNQ41_015430 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LNQ41_015435 PF00463 Isocitrate lyase family LNQ41_015440 PF01274 Malate synthase LNQ41_015445 PF04204 Homoserine O-succinyltransferase LNQ41_015480 PF01808 AICARFT/IMPCHase bienzyme LNQ41_015480 PF02142 MGS-like domain LNQ41_015485 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LNQ41_015485 PF02843 Phosphoribosylglycinamide synthetase, C domain LNQ41_015485 PF02844 Phosphoribosylglycinamide synthetase, N domain LNQ41_015490 PF07356 Protein of unknown function (DUF1481) LNQ41_015495 PF00216 Bacterial DNA-binding protein LNQ41_015500 PF04222 Protein of unknown function (DUF416) LNQ41_015505 PF04493 Endonuclease V LNQ41_015510 PF01208 Uroporphyrinogen decarboxylase (URO-D) LNQ41_015515 PF09297 NADH pyrophosphatase zinc ribbon domain LNQ41_015515 PF00293 NUDIX domain LNQ41_015520 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LNQ41_015525 PF13667 ThiC-associated domain LNQ41_015525 PF01964 Radical SAM ThiC family LNQ41_015530 PF02581 Thiamine monophosphate synthase LNQ41_015535 PF00899 ThiF family LNQ41_015540 PF02597 ThiS family LNQ41_015545 PF05690 Thiazole biosynthesis protein ThiG LNQ41_015550 PF04055 Radical SAM superfamily LNQ41_015550 PF06968 Biotin and Thiamin Synthesis associated domain LNQ41_015555 PF04998 RNA polymerase Rpb1, domain 5 LNQ41_015555 PF05000 RNA polymerase Rpb1, domain 4 LNQ41_015555 PF04983 RNA polymerase Rpb1, domain 3 LNQ41_015555 PF00623 RNA polymerase Rpb1, domain 2 LNQ41_015555 PF04997 RNA polymerase Rpb1, domain 1 LNQ41_015560 PF04561 RNA polymerase Rpb2, domain 2 LNQ41_015560 PF04565 RNA polymerase Rpb2, domain 3 LNQ41_015560 PF10385 RNA polymerase beta subunit external 1 domain LNQ41_015560 PF00562 RNA polymerase Rpb2, domain 6 LNQ41_015560 PF04560 RNA polymerase Rpb2, domain 7 LNQ41_015560 PF04563 RNA polymerase beta subunit LNQ41_015565 PF16320 Ribosomal protein L7/L12 dimerisation domain LNQ41_015565 PF00542 Ribosomal protein L7/L12 C-terminal domain LNQ41_015570 PF00466 Ribosomal protein L10 LNQ41_015575 PF00687 Ribosomal protein L1p/L10e family LNQ41_015580 PF00298 Ribosomal protein L11, RNA binding domain LNQ41_015580 PF03946 Ribosomal protein L11, N-terminal domain LNQ41_015585 PF00467 KOW motif LNQ41_015585 PF02357 Transcription termination factor nusG LNQ41_015590 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LNQ41_015595 PF00009 Elongation factor Tu GTP binding domain LNQ41_015595 PF03143 Elongation factor Tu C-terminal domain LNQ41_015595 PF03144 Elongation factor Tu domain 2 LNQ41_015620 PF00485 Phosphoribulokinase / Uridine kinase family LNQ41_015625 PF02237 Biotin protein ligase C terminal domain LNQ41_015625 PF03099 Biotin/lipoate A/B protein ligase family LNQ41_015625 PF08279 HTH domain LNQ41_015630 PF01565 FAD binding domain LNQ41_015630 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LNQ41_015655 PF12724 Flavodoxin domain LNQ41_015660 PF02386 Cation transport protein LNQ41_015665 PF09186 Domain of unknown function (DUF1949) LNQ41_015665 PF01205 Uncharacterized protein family UPF0029 LNQ41_015670 PF00557 Metallopeptidase family M24 LNQ41_015675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNQ41_015675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNQ41_015675 PF00378 Enoyl-CoA hydratase/isomerase LNQ41_015680 PF02803 Thiolase, C-terminal domain LNQ41_015680 PF00108 Thiolase, N-terminal domain LNQ41_015685 PF00970 Oxidoreductase FAD-binding domain LNQ41_015685 PF00175 Oxidoreductase NAD-binding domain LNQ41_015690 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LNQ41_015700 PF02357 Transcription termination factor nusG LNQ41_015705 PF00490 Delta-aminolevulinic acid dehydratase LNQ41_015710 PF01026 TatD related DNase LNQ41_015715 PF00902 Sec-independent protein translocase protein (TatC) LNQ41_015725 PF02416 mttA/Hcf106 family LNQ41_015730 PF03109 ABC1 family LNQ41_015735 PF02036 SCP-2 sterol transfer family LNQ41_015740 PF01209 ubiE/COQ5 methyltransferase family LNQ41_015745 PF02646 RmuC family LNQ41_015750 PF09335 SNARE associated Golgi protein LNQ41_015755 PF13722 5TM C-terminal transporter carbon starvation CstA LNQ41_015755 PF02554 Carbon starvation protein CstA LNQ41_015765 PF01048 Phosphorylase superfamily LNQ41_015770 PF01738 Dienelactone hydrolase family LNQ41_015775 PF08267 Cobalamin-independent synthase, N-terminal domain LNQ41_015775 PF01717 Cobalamin-independent synthase, Catalytic domain LNQ41_015780 PF03466 LysR substrate binding domain LNQ41_015780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_015785 PF00892 EamA-like transporter family LNQ41_015795 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ41_015800 PF00005 ABC transporter LNQ41_015800 PF17912 MalK OB fold domain LNQ41_015805 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_015810 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_015815 PF13416 Bacterial extracellular solute-binding protein LNQ41_015850 PF00005 ABC transporter LNQ41_015855 PF00005 ABC transporter LNQ41_015855 PF12399 Branched-chain amino acid ATP-binding cassette transporter LNQ41_015860 PF02653 Branched-chain amino acid transport system / permease component LNQ41_015860 PF11862 Domain of unknown function (DUF3382) LNQ41_015865 PF02653 Branched-chain amino acid transport system / permease component LNQ41_015870 PF13458 Periplasmic binding protein LNQ41_015875 PF12568 Acetyltransferase (GNAT) domain, PanZ LNQ41_015880 PF02595 Glycerate kinase family LNQ41_015885 PF02447 GntP family permease LNQ41_015890 PF05651 Putative sugar diacid recognition LNQ41_015890 PF17853 GGDEF-like domain LNQ41_015890 PF13556 PucR C-terminal helix-turn-helix domain LNQ41_015895 PF00140 Sigma-70 factor, region 1.2 LNQ41_015895 PF04542 Sigma-70 region 2 LNQ41_015895 PF04545 Sigma-70, region 4 LNQ41_015900 PF18075 FtsX extracellular domain LNQ41_015900 PF02687 FtsX-like permease family LNQ41_015905 PF00005 ABC transporter LNQ41_015910 PF02881 SRP54-type protein, helical bundle domain LNQ41_015910 PF00448 SRP54-type protein, GTPase domain LNQ41_015910 PF02881 SRP54-type protein, helical bundle domain LNQ41_015910 PF00448 SRP54-type protein, GTPase domain LNQ41_015920 PF06611 Protein of unknown function (DUF1145) LNQ41_015935 PF07947 YhhN family LNQ41_015940 PF00403 Heavy-metal-associated domain LNQ41_015945 PF01206 Sulfurtransferase TusA LNQ41_015950 PF02592 Putative vitamin uptake transporter LNQ41_015955 PF08786 DcrB LNQ41_015960 PF13183 4Fe-4S dicluster domain LNQ41_015960 PF02754 Cysteine-rich domain LNQ41_015965 PF00890 FAD binding domain LNQ41_015970 PF01266 FAD dependent oxidoreductase LNQ41_015970 PF04324 BFD-like [2Fe-2S] binding domain LNQ41_015980 PF07690 Major Facilitator Superfamily LNQ41_015985 PF03009 Glycerophosphoryl diester phosphodiesterase family LNQ41_015995 PF12146 Serine aminopeptidase, S33 LNQ41_016000 PF01810 LysE type translocator LNQ41_016005 PF00570 HRDC domain LNQ41_016005 PF16124 RecQ zinc-binding LNQ41_016005 PF09382 RQC domain LNQ41_016005 PF00270 DEAD/DEAH box helicase LNQ41_016005 PF00271 Helicase conserved C-terminal domain LNQ41_016010 PF02253 Phospholipase A1 LNQ41_016015 PF03061 Thioesterase superfamily LNQ41_016020 PF00892 EamA-like transporter family LNQ41_016025 PF01544 CorA-like Mg2+ transporter protein LNQ41_016035 PF09370 Phosphoenolpyruvate hydrolase-like LNQ41_016050 PF00580 UvrD/REP helicase N-terminal domain LNQ41_016050 PF13361 UvrD-like helicase C-terminal domain LNQ41_016055 PF13419 Haloacid dehalogenase-like hydrolase LNQ41_016060 PF02899 Phage integrase, N-terminal SAM-like domain LNQ41_016060 PF00589 Phage integrase family LNQ41_016065 PF04340 Protein of unknown function, DUF484 LNQ41_016070 PF01678 Diaminopimelate epimerase LNQ41_016075 PF13627 Prokaryotic lipoprotein-attachment site LNQ41_016080 PF01491 Frataxin-like domain LNQ41_016085 PF01295 Adenylate cyclase, class-I LNQ41_016085 PF12633 Adenylate cyclase NT domain LNQ41_016090 PF03900 Porphobilinogen deaminase, C-terminal domain LNQ41_016090 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LNQ41_016095 PF02602 Uroporphyrinogen-III synthase HemD LNQ41_016100 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LNQ41_016105 PF07719 Tetratricopeptide repeat LNQ41_016105 PF07219 HemY protein N-terminus LNQ41_016135 PF00324 Amino acid permease LNQ41_016140 PF03808 Glycosyl transferase WecB/TagA/CpsF family LNQ41_016145 PF06899 WzyE protein, O-antigen assembly polymerase LNQ41_016150 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LNQ41_016155 PF01943 Polysaccharide biosynthesis protein LNQ41_016160 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNQ41_016170 PF00483 Nucleotidyl transferase LNQ41_016175 PF16363 GDP-mannose 4,6 dehydratase LNQ41_016180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNQ41_016180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNQ41_016180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNQ41_016185 PF02350 UDP-N-acetylglucosamine 2-epimerase LNQ41_016190 PF02706 Chain length determinant protein LNQ41_016195 PF00953 Glycosyl transferase family 4 LNQ41_016200 PF07497 Rho termination factor, RNA-binding domain LNQ41_016200 PF07498 Rho termination factor, N-terminal domain LNQ41_016200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ41_016205 PF00085 Thioredoxin LNQ41_016210 PF00271 Helicase conserved C-terminal domain LNQ41_016210 PF00270 DEAD/DEAH box helicase LNQ41_016215 PF02541 Ppx/GppA phosphatase family LNQ41_016220 PF00580 UvrD/REP helicase N-terminal domain LNQ41_016220 PF13361 UvrD-like helicase C-terminal domain LNQ41_016230 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LNQ41_016230 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LNQ41_016235 PF03466 LysR substrate binding domain LNQ41_016235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_016240 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LNQ41_016240 PF18416 N-acetylglucosamine binding protein domain 2 LNQ41_016245 PF00291 Pyridoxal-phosphate dependent enzyme LNQ41_016245 PF00585 C-terminal regulatory domain of Threonine dehydratase LNQ41_016250 PF00920 Dehydratase family LNQ41_016255 PF01063 Amino-transferase class IV LNQ41_016265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNQ41_016265 PF00205 Thiamine pyrophosphate enzyme, central domain LNQ41_016265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNQ41_016270 PF08046 IlvGEDA operon leader peptide LNQ41_016275 PF13335 Magnesium chelatase, subunit ChlI C-terminal LNQ41_016275 PF01078 Magnesium chelatase, subunit ChlI LNQ41_016280 PF04219 Protein of unknown function, DUF LNQ41_016285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_016285 PF03466 LysR substrate binding domain LNQ41_016330 PF01177 Asp/Glu/Hydantoin racemase LNQ41_016335 PF07715 TonB-dependent Receptor Plug Domain LNQ41_016335 PF00593 TonB dependent receptor LNQ41_016340 PF05958 tRNA (Uracil-5-)-methyltransferase LNQ41_016345 PF07226 Protein of unknown function (DUF1422) LNQ41_016350 PF00440 Bacterial regulatory proteins, tetR family LNQ41_016355 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_016355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ41_016360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_016360 PF03466 LysR substrate binding domain LNQ41_016365 PF00462 Glutaredoxin LNQ41_016365 PF08534 Redoxin LNQ41_016370 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNQ41_016370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNQ41_016390 PF00529 HlyD membrane-fusion protein of T1SS LNQ41_016395 PF00664 ABC transporter transmembrane region LNQ41_016395 PF00005 ABC transporter LNQ41_016405 PF07715 TonB-dependent Receptor Plug Domain LNQ41_016405 PF00593 TonB dependent receptor LNQ41_016410 PF14698 Argininosuccinate lyase C-terminal LNQ41_016410 PF00206 Lyase LNQ41_016415 PF00764 Arginosuccinate synthase LNQ41_016420 PF00696 Amino acid kinase family LNQ41_016425 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNQ41_016425 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNQ41_016430 PF07687 Peptidase dimerisation domain LNQ41_016430 PF01546 Peptidase family M20/M25/M40 LNQ41_016435 PF00311 Phosphoenolpyruvate carboxylase LNQ41_016445 PF02219 Methylenetetrahydrofolate reductase LNQ41_016465 PF00696 Amino acid kinase family LNQ41_016465 PF00742 Homoserine dehydrogenase LNQ41_016465 PF03447 Homoserine dehydrogenase, NAD binding domain LNQ41_016470 PF01053 Cys/Met metabolism PLP-dependent enzyme LNQ41_016475 PF01340 Met Apo-repressor, MetJ LNQ41_016480 PF01197 Ribosomal protein L31 LNQ41_016485 PF18074 Primosomal protein N C-terminal domain LNQ41_016485 PF17764 3′ DNA-binding domain (3′BD) LNQ41_016485 PF00271 Helicase conserved C-terminal domain LNQ41_016485 PF00270 DEAD/DEAH box helicase LNQ41_016485 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LNQ41_016490 PF00356 Bacterial regulatory proteins, lacI family LNQ41_016495 PF05036 Sporulation related domain LNQ41_016500 PF00227 Proteasome subunit LNQ41_016505 PF00004 ATPase family associated with various cellular activities (AAA) LNQ41_016505 PF07724 AAA domain (Cdc48 subfamily) LNQ41_016505 PF10431 C-terminal, D2-small domain, of ClpB protein LNQ41_016510 PF01040 UbiA prenyltransferase family LNQ41_016515 PF03737 Aldolase/RraA LNQ41_016520 PF06005 Cell division protein ZapB LNQ41_016525 PF00230 Major intrinsic protein LNQ41_016530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNQ41_016530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNQ41_016535 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LNQ41_016540 PF07690 Major Facilitator Superfamily LNQ41_016545 PF00175 Oxidoreductase NAD-binding domain LNQ41_016545 PF00970 Oxidoreductase FAD-binding domain LNQ41_016550 PF05656 Protein of unknown function (DUF805) LNQ41_016555 PF07305 Protein of unknown function (DUF1454) LNQ41_016560 PF00121 Triosephosphate isomerase LNQ41_016570 PF00365 Phosphofructokinase LNQ41_016575 PF01545 Cation efflux family LNQ41_016575 PF16916 Dimerisation domain of Zinc Transporter LNQ41_016580 PF07813 LTXXQ motif family protein LNQ41_016585 PF00486 Transcriptional regulatory protein, C terminal LNQ41_016585 PF00072 Response regulator receiver domain LNQ41_016590 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_016590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_016590 PF00672 HAMP domain LNQ41_016590 PF16527 Two-component sensor protein CpxA, periplasmic domain LNQ41_016595 PF00588 SpoU rRNA Methylase family LNQ41_016600 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ41_016600 PF06426 Serine acetyltransferase, N-terminal LNQ41_016605 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LNQ41_016605 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LNQ41_016610 PF02556 Preprotein translocase subunit SecB LNQ41_016615 PF00462 Glutaredoxin LNQ41_016620 PF00581 Rhodanese-like domain LNQ41_016625 PF01676 Metalloenzyme superfamily LNQ41_016625 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LNQ41_016630 PF01551 Peptidase family M23 LNQ41_016635 PF04748 Divergent polysaccharide deacetylase LNQ41_016640 PF08240 Alcohol dehydrogenase GroES-like domain LNQ41_016640 PF00107 Zinc-binding dehydrogenase LNQ41_016645 PF00155 Aminotransferase class I and II LNQ41_016650 PF01370 NAD dependent epimerase/dehydratase family LNQ41_016655 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ41_016660 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNQ41_016665 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LNQ41_016670 PF00535 Glycosyl transferase family 2 LNQ41_016675 PF01467 Cytidylyltransferase-like LNQ41_016680 PF06827 Zinc finger found in FPG and IleRS LNQ41_016680 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LNQ41_016680 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LNQ41_016685 PF00471 Ribosomal protein L33 LNQ41_016690 PF00830 Ribosomal L28 family LNQ41_016695 PF04002 RadC-like JAB domain LNQ41_016700 PF02441 Flavoprotein LNQ41_016700 PF04127 DNA / pantothenate metabolism flavoprotein LNQ41_016705 PF00692 dUTPase LNQ41_016710 PF00440 Bacterial regulatory proteins, tetR family LNQ41_016715 PF00156 Phosphoribosyl transferase domain LNQ41_016720 PF01138 3' exoribonuclease family, domain 1 LNQ41_016720 PF03725 3' exoribonuclease family, domain 2 LNQ41_016725 PF08340 Domain of unknown function (DUF1732) LNQ41_016725 PF03755 YicC-like family, N-terminal region LNQ41_016735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNQ41_016735 PF03466 LysR substrate binding domain LNQ41_016740 PF00990 Diguanylate cyclase, GGDEF domain LNQ41_016740 PF13426 PAS domain LNQ41_016740 PF00563 EAL domain LNQ41_016745 PF00378 Enoyl-CoA hydratase/isomerase LNQ41_016750 PF07670 Nucleoside recognition LNQ41_016750 PF07662 Na+ dependent nucleoside transporter C-terminus LNQ41_016750 PF01773 Na+ dependent nucleoside transporter N-terminus LNQ41_016760 PF03458 UPF0126 domain LNQ41_016765 PF03120 NAD-dependent DNA ligase OB-fold domain LNQ41_016765 PF01653 NAD-dependent DNA ligase adenylation domain LNQ41_016770 PF00625 Guanylate kinase LNQ41_016775 PF01192 RNA polymerase Rpb6 LNQ41_016780 PF02824 TGS domain LNQ41_016780 PF04607 Region found in RelA / SpoT proteins LNQ41_016780 PF13291 ACT domain LNQ41_016785 PF12105 SpoU, rRNA methylase, C-terminal LNQ41_016785 PF00588 SpoU rRNA Methylase family LNQ41_016790 PF00270 DEAD/DEAH box helicase LNQ41_016790 PF00271 Helicase conserved C-terminal domain LNQ41_016790 PF17191 RecG wedge domain LNQ41_016795 PF03616 Sodium/glutamate symporter LNQ41_016800 PF00860 Permease family LNQ41_016805 PF05170 AsmA family LNQ41_016810 PF09500 Putative thioesterase (yiiD_Cterm) LNQ41_016810 PF00583 Acetyltransferase (GNAT) family LNQ41_016815 PF02580 D-Tyr-tRNA(Tyr) deacylase LNQ41_016820 PF03631 Virulence factor BrkB LNQ41_016825 PF13419 Haloacid dehalogenase-like hydrolase LNQ41_016830 PF03144 Elongation factor Tu domain 2 LNQ41_016830 PF00009 Elongation factor Tu GTP binding domain LNQ41_016830 PF00679 Elongation factor G C-terminus LNQ41_016835 PF03951 Glutamine synthetase, beta-Grasp domain LNQ41_016835 PF00120 Glutamine synthetase, catalytic domain LNQ41_016840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNQ41_016840 PF00512 His Kinase A (phospho-acceptor) domain LNQ41_016840 PF00989 PAS fold LNQ41_016845 PF02954 Bacterial regulatory protein, Fis family LNQ41_016845 PF00072 Response regulator receiver domain LNQ41_016845 PF00158 Sigma-54 interaction domain LNQ41_016850 PF06969 HemN C-terminal domain LNQ41_016850 PF04055 Radical SAM superfamily LNQ41_016855 PF04220 Der GTPase activator (YihI) LNQ41_016860 PF01926 50S ribosome-binding GTPase LNQ41_016865 PF01612 3'-5' exonuclease LNQ41_016865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNQ41_016865 PF01367 5'-3' exonuclease, C-terminal SAM fold LNQ41_016865 PF00476 DNA polymerase family A LNQ41_016870 PF01323 DSBA-like thioredoxin domain LNQ41_016875 PF01636 Phosphotransferase enzyme family LNQ41_016880 PF06288 Protein of unknown function (DUF1040) LNQ41_016885 PF12804 MobA-like NTP transferase domain LNQ41_016890 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LNQ41_016915 PF00392 Bacterial regulatory proteins, gntR family LNQ41_016915 PF07729 FCD domain LNQ41_016920 PF00356 Bacterial regulatory proteins, lacI family LNQ41_016925 PF00294 pfkB family carbohydrate kinase LNQ41_016930 PF13407 Periplasmic binding protein domain LNQ41_016935 PF02653 Branched-chain amino acid transport system / permease component LNQ41_016940 PF00005 ABC transporter LNQ41_016945 PF05025 RbsD / FucU transport protein family LNQ41_016950 PF02705 K+ potassium transporter LNQ41_016955 PF07728 AAA domain (dynein-related subfamily) LNQ41_016955 PF12592 Protein of unknown function (DUF3763) LNQ41_016955 PF17868 AAA lid domain LNQ41_016960 PF05762 VWA domain containing CoxE-like protein LNQ41_016970 PF03590 Aspartate-ammonia ligase LNQ41_016975 PF01037 Lrp/AsnC ligand binding domain LNQ41_016980 PF00258 Flavodoxin LNQ41_016985 PF01134 Glucose inhibited division protein A LNQ41_016985 PF13932 GidA associated domain LNQ41_016990 PF02527 rRNA small subunit methyltransferase G LNQ41_016995 PF03899 ATP synthase I chain LNQ41_017000 PF00119 ATP synthase A chain LNQ41_017005 PF00137 ATP synthase subunit C LNQ41_017010 PF00430 ATP synthase B/B' CF(0) LNQ41_017015 PF00213 ATP synthase delta (OSCP) subunit LNQ41_017020 PF00306 ATP synthase alpha/beta chain, C terminal domain LNQ41_017020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ41_017020 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ41_017025 PF00231 ATP synthase LNQ41_017030 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNQ41_017030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNQ41_017035 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LNQ41_017035 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LNQ41_017040 PF00132 Bacterial transferase hexapeptide (six repeats) LNQ41_017040 PF12804 MobA-like NTP transferase domain LNQ41_017045 PF01380 SIS domain LNQ41_017050 PF12849 PBP superfamily domain LNQ41_017055 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_017060 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_017065 PF00005 ABC transporter LNQ41_017070 PF01895 PhoU domain LNQ41_017075 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNQ41_017080 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_017085 PF00528 Binding-protein-dependent transport system inner membrane component LNQ41_017090 PF00860 Permease family LNQ41_017095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNQ41_017095 PF02203 Tar ligand binding domain homologue LNQ41_017095 PF00672 HAMP domain LNQ41_017105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LNQ41_017105 PF02753 Pili assembly chaperone PapD, C-terminal domain LNQ41_017110 PF00577 Outer membrane usher protein LNQ41_017110 PF13953 PapC C-terminal domain LNQ41_017110 PF13954 PapC N-terminal domain LNQ41_017120 PF01926 50S ribosome-binding GTPase LNQ41_017120 PF12631 MnmE helical domain LNQ41_017120 PF10396 GTP-binding protein TrmE N-terminus LNQ41_017125 PF02096 60Kd inner membrane protein LNQ41_017125 PF14849 YidC periplasmic domain LNQ41_017130 PF01809 Putative membrane protein insertion efficiency factor LNQ41_017135 PF00825 Ribonuclease P LNQ41_017140 PF00468 Ribosomal protein L34